Query 040638
Match_columns 419
No_of_seqs 371 out of 3077
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:20:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040638.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040638hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0743 AAA+-type ATPase [Post 100.0 1E-100 3E-105 749.2 29.6 396 5-419 1-411 (457)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.4E-42 3E-47 330.4 17.0 207 186-418 144-362 (406)
3 KOG0730 AAA+-type ATPase [Post 100.0 1.1E-38 2.3E-43 323.7 14.1 216 176-418 417-642 (693)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-37 3.4E-42 311.2 17.0 216 176-418 494-723 (802)
5 KOG0734 AAA+-type ATPase conta 100.0 4.1E-37 8.9E-42 304.0 15.7 201 190-418 302-511 (752)
6 KOG0733 Nuclear AAA ATPase (VC 100.0 3.7E-35 8E-40 294.2 17.5 208 184-417 181-400 (802)
7 KOG0736 Peroxisome assembly fa 100.0 1.6E-34 3.4E-39 296.0 15.9 204 190-417 670-884 (953)
8 KOG0727 26S proteasome regulat 100.0 2.9E-34 6.2E-39 261.5 14.7 209 186-418 148-366 (408)
9 KOG0731 AAA+-type ATPase conta 100.0 5.2E-34 1.1E-38 297.5 18.2 207 188-418 307-523 (774)
10 KOG0726 26S proteasome regulat 100.0 2.7E-34 5.8E-39 266.3 9.2 206 189-418 182-396 (440)
11 KOG0728 26S proteasome regulat 100.0 4.8E-33 1E-37 253.2 14.5 207 188-418 143-358 (404)
12 PTZ00454 26S protease regulato 100.0 5.9E-32 1.3E-36 271.5 18.9 207 188-418 141-356 (398)
13 KOG0652 26S proteasome regulat 100.0 5.7E-32 1.2E-36 247.5 14.8 203 189-417 168-381 (424)
14 COG0465 HflB ATP-dependent Zn 100.0 1.2E-31 2.6E-36 275.6 16.4 206 188-418 146-360 (596)
15 KOG0735 AAA+-type ATPase [Post 100.0 4.6E-31 1E-35 268.5 16.3 214 177-417 650-874 (952)
16 TIGR03689 pup_AAA proteasome A 100.0 4E-31 8.7E-36 270.7 15.5 181 188-394 178-380 (512)
17 KOG0738 AAA+-type ATPase [Post 100.0 1.7E-31 3.7E-36 256.2 11.6 207 183-418 202-422 (491)
18 KOG0729 26S proteasome regulat 100.0 2.5E-31 5.4E-36 244.0 12.0 206 186-417 170-387 (435)
19 PRK03992 proteasome-activating 100.0 4E-30 8.8E-35 259.0 19.0 209 186-418 124-342 (389)
20 TIGR01243 CDC48 AAA family ATP 100.0 4.5E-30 9.8E-35 278.3 18.0 208 185-418 445-662 (733)
21 PTZ00361 26 proteosome regulat 100.0 3.2E-30 6.8E-35 260.7 14.4 208 187-418 178-394 (438)
22 TIGR01241 FtsH_fam ATP-depende 100.0 6.1E-30 1.3E-34 265.8 16.9 207 187-418 50-265 (495)
23 KOG0739 AAA+-type ATPase [Post 100.0 4E-30 8.6E-35 239.2 12.1 207 183-418 123-340 (439)
24 CHL00195 ycf46 Ycf46; Provisio 100.0 1.7E-29 3.7E-34 259.0 16.6 200 188-418 224-434 (489)
25 COG0464 SpoVK ATPases of the A 100.0 6.4E-29 1.4E-33 258.5 17.8 211 181-418 230-452 (494)
26 PLN00020 ribulose bisphosphate 100.0 2.5E-28 5.5E-33 236.6 18.4 196 187-410 110-328 (413)
27 CHL00176 ftsH cell division pr 100.0 9.8E-29 2.1E-33 260.7 16.6 207 187-418 178-393 (638)
28 KOG0651 26S proteasome regulat 100.0 4.9E-29 1.1E-33 233.3 11.1 199 187-409 125-336 (388)
29 COG1223 Predicted ATPase (AAA+ 100.0 2.2E-28 4.8E-33 223.9 12.7 200 188-419 117-325 (368)
30 TIGR01242 26Sp45 26S proteasom 100.0 1.7E-27 3.7E-32 238.5 16.7 206 187-418 117-333 (364)
31 KOG0737 AAA+-type ATPase [Post 99.9 4.5E-28 9.8E-33 232.5 10.1 201 190-419 90-302 (386)
32 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.8E-27 4E-32 264.0 14.5 175 213-418 1617-1847(2281)
33 PRK10733 hflB ATP-dependent me 99.9 5.7E-27 1.2E-31 249.6 16.1 206 188-418 148-362 (644)
34 PF14363 AAA_assoc: Domain ass 99.9 8.9E-27 1.9E-31 188.9 12.0 97 28-125 1-98 (98)
35 KOG0732 AAA+-type ATPase conta 99.9 1.5E-25 3.2E-30 240.0 16.0 202 189-417 262-478 (1080)
36 TIGR01243 CDC48 AAA family ATP 99.9 3.7E-25 8.1E-30 240.0 17.5 202 189-417 175-385 (733)
37 KOG0730 AAA+-type ATPase [Post 99.9 7.7E-25 1.7E-29 223.1 15.2 202 187-418 180-391 (693)
38 KOG0740 AAA+-type ATPase [Post 99.9 1.3E-24 2.8E-29 215.5 12.7 202 189-418 150-361 (428)
39 KOG0741 AAA+-type ATPase [Post 99.9 2.5E-24 5.5E-29 213.5 8.6 209 185-418 211-445 (744)
40 PF00004 AAA: ATPase family as 99.8 5.8E-20 1.3E-24 156.4 11.6 123 229-378 1-132 (132)
41 PF05496 RuvB_N: Holliday junc 99.8 5.9E-19 1.3E-23 161.4 17.4 183 186-414 18-215 (233)
42 TIGR02881 spore_V_K stage V sp 99.8 2.8E-17 6E-22 157.4 16.6 179 191-405 5-204 (261)
43 PRK00080 ruvB Holliday junctio 99.7 4E-17 8.6E-22 161.4 17.3 184 186-415 19-217 (328)
44 KOG0744 AAA+-type ATPase [Post 99.7 8.9E-18 1.9E-22 158.7 10.1 179 190-393 140-341 (423)
45 CHL00181 cbbX CbbX; Provisiona 99.7 3.8E-17 8.1E-22 158.1 14.7 176 192-402 23-219 (287)
46 KOG0742 AAA+-type ATPase [Post 99.7 2.2E-17 4.8E-22 160.1 12.8 171 189-394 352-530 (630)
47 TIGR02880 cbbX_cfxQ probable R 99.7 4.2E-17 9.1E-22 157.8 14.7 176 193-403 23-219 (284)
48 TIGR00635 ruvB Holliday juncti 99.7 2.5E-16 5.4E-21 154.0 16.5 179 190-414 2-195 (305)
49 COG2255 RuvB Holliday junction 99.7 4.9E-16 1.1E-20 145.0 15.0 182 187-414 21-217 (332)
50 PF05673 DUF815: Protein of un 99.7 1.9E-15 4.1E-20 140.2 16.9 178 177-400 12-215 (249)
51 TIGR00763 lon ATP-dependent pr 99.7 1.1E-15 2.4E-20 166.8 15.1 161 190-392 317-505 (775)
52 PRK04195 replication factor C 99.6 3.6E-15 7.8E-20 154.8 16.4 168 185-402 7-183 (482)
53 PRK14962 DNA polymerase III su 99.6 6.2E-15 1.4E-19 151.5 16.1 164 185-403 7-200 (472)
54 COG0466 Lon ATP-dependent Lon 99.6 3.3E-15 7.1E-20 154.5 12.6 168 193-394 324-510 (782)
55 COG2256 MGS1 ATPase related to 99.6 5.1E-15 1.1E-19 144.4 12.7 154 186-395 18-179 (436)
56 PRK07003 DNA polymerase III su 99.6 1.9E-14 4E-19 151.7 16.3 162 186-402 10-201 (830)
57 PRK14956 DNA polymerase III su 99.6 1.5E-14 3.3E-19 146.9 15.2 163 186-403 12-204 (484)
58 PRK12323 DNA polymerase III su 99.6 8.4E-15 1.8E-19 152.4 13.1 162 186-402 10-206 (700)
59 PHA02544 44 clamp loader, smal 99.6 3E-14 6.4E-19 140.1 15.3 157 178-391 9-172 (316)
60 PRK14961 DNA polymerase III su 99.6 5.9E-14 1.3E-18 140.6 16.1 162 186-402 10-201 (363)
61 PLN03025 replication factor C 99.6 4.5E-14 9.8E-19 139.1 14.4 168 185-408 6-188 (319)
62 PRK13342 recombination factor 99.6 5.5E-14 1.2E-18 143.3 14.9 150 186-394 6-166 (413)
63 PRK14960 DNA polymerase III su 99.6 6.5E-14 1.4E-18 146.2 15.5 162 186-402 9-200 (702)
64 TIGR02639 ClpA ATP-dependent C 99.5 2.1E-14 4.5E-19 156.0 11.5 158 187-394 177-360 (731)
65 KOG0735 AAA+-type ATPase [Post 99.5 4.6E-14 1E-18 145.2 12.7 192 192-417 408-613 (952)
66 PRK06893 DNA replication initi 99.5 9E-14 2E-18 130.5 13.0 174 185-407 9-189 (229)
67 PRK06645 DNA polymerase III su 99.5 2E-13 4.4E-18 141.0 16.4 162 186-402 15-210 (507)
68 PRK14963 DNA polymerase III su 99.5 2.6E-13 5.5E-18 140.7 17.1 162 186-402 8-198 (504)
69 PRK14964 DNA polymerase III su 99.5 1.7E-13 3.6E-18 140.7 15.2 171 186-411 7-208 (491)
70 KOG2004 Mitochondrial ATP-depe 99.5 8.4E-14 1.8E-18 143.5 12.4 169 193-394 412-598 (906)
71 PRK14949 DNA polymerase III su 99.5 2.2E-13 4.8E-18 146.1 15.7 161 186-401 10-200 (944)
72 PRK14970 DNA polymerase III su 99.5 3.6E-13 7.8E-18 135.3 16.2 163 186-403 11-191 (367)
73 TIGR02397 dnaX_nterm DNA polym 99.5 2.7E-13 5.8E-18 135.3 15.1 169 186-409 8-207 (355)
74 PRK07994 DNA polymerase III su 99.5 3E-13 6.5E-18 142.7 16.0 160 186-400 10-199 (647)
75 PRK14958 DNA polymerase III su 99.5 2.4E-13 5.3E-18 141.1 14.7 161 186-401 10-200 (509)
76 PRK08691 DNA polymerase III su 99.5 2.4E-13 5.2E-18 143.1 14.6 162 186-402 10-201 (709)
77 PRK07940 DNA polymerase III su 99.5 5.4E-13 1.2E-17 134.3 16.3 156 189-390 2-187 (394)
78 PRK07764 DNA polymerase III su 99.5 3.9E-13 8.4E-18 146.0 16.4 162 185-401 8-201 (824)
79 PRK05563 DNA polymerase III su 99.5 5.1E-13 1.1E-17 140.5 16.7 162 186-402 10-201 (559)
80 PRK10787 DNA-binding ATP-depen 99.5 3.1E-13 6.7E-18 146.7 15.3 161 190-393 319-507 (784)
81 PRK14952 DNA polymerase III su 99.5 6E-13 1.3E-17 139.6 16.1 163 186-403 7-201 (584)
82 PRK14951 DNA polymerase III su 99.5 4.9E-13 1.1E-17 140.8 15.1 162 186-402 10-206 (618)
83 KOG0989 Replication factor C, 99.5 2E-13 4.3E-18 128.9 10.7 169 179-405 25-214 (346)
84 KOG0736 Peroxisome assembly fa 99.5 4.9E-13 1.1E-17 138.9 14.4 166 223-417 428-602 (953)
85 TIGR02640 gas_vesic_GvpN gas v 99.5 9.6E-13 2.1E-17 126.1 15.5 129 227-394 22-200 (262)
86 PRK12402 replication factor C 99.5 6.4E-13 1.4E-17 131.5 14.6 162 185-402 8-207 (337)
87 PRK14969 DNA polymerase III su 99.5 5.1E-13 1.1E-17 139.6 14.2 161 186-401 10-200 (527)
88 PRK14957 DNA polymerase III su 99.5 9.4E-13 2E-17 137.0 16.0 161 186-401 10-200 (546)
89 COG2607 Predicted ATPase (AAA+ 99.5 1.8E-12 4E-17 118.6 15.6 180 178-401 46-248 (287)
90 PRK05896 DNA polymerase III su 99.5 6.8E-13 1.5E-17 138.3 14.6 161 186-401 10-200 (605)
91 PRK07133 DNA polymerase III su 99.5 9.1E-13 2E-17 139.9 15.8 159 186-399 12-197 (725)
92 PRK14959 DNA polymerase III su 99.5 7.3E-13 1.6E-17 138.7 14.8 162 186-402 10-201 (624)
93 TIGR02902 spore_lonB ATP-depen 99.5 6E-13 1.3E-17 139.3 13.3 170 186-407 59-291 (531)
94 TIGR03420 DnaA_homol_Hda DnaA 99.4 5E-13 1.1E-17 124.8 10.7 171 186-408 9-188 (226)
95 PRK10865 protein disaggregatio 99.4 5.4E-13 1.2E-17 146.7 12.6 158 187-394 173-356 (857)
96 TIGR03345 VI_ClpV1 type VI sec 99.4 5.2E-13 1.1E-17 146.5 12.2 157 187-393 182-364 (852)
97 PRK14965 DNA polymerase III su 99.4 1E-12 2.2E-17 138.7 14.0 161 186-401 10-200 (576)
98 PRK05342 clpX ATP-dependent pr 99.4 3E-12 6.5E-17 129.5 16.2 176 190-389 68-322 (412)
99 PRK06305 DNA polymerase III su 99.4 2.4E-12 5.2E-17 132.2 15.7 161 186-401 11-202 (451)
100 PRK14955 DNA polymerase III su 99.4 1.3E-12 2.9E-17 132.4 13.0 159 186-399 10-206 (397)
101 PRK14953 DNA polymerase III su 99.4 2.8E-12 6E-17 132.6 15.4 162 186-402 10-201 (486)
102 PRK11034 clpA ATP-dependent Cl 99.4 9.4E-13 2E-17 142.1 11.9 155 190-393 184-363 (758)
103 PRK08084 DNA replication initi 99.4 2.2E-12 4.7E-17 121.6 12.8 170 188-407 18-195 (235)
104 PRK13341 recombination factor 99.4 2.5E-12 5.3E-17 138.3 14.8 152 186-393 22-182 (725)
105 PRK14954 DNA polymerase III su 99.4 4.1E-12 8.9E-17 134.2 15.8 161 186-401 10-208 (620)
106 PRK08451 DNA polymerase III su 99.4 6.3E-12 1.4E-16 130.3 16.7 161 186-401 8-198 (535)
107 PRK11034 clpA ATP-dependent Cl 99.4 3.5E-12 7.5E-17 137.7 15.3 159 193-393 459-667 (758)
108 PRK06647 DNA polymerase III su 99.4 4.5E-12 9.8E-17 133.0 15.7 162 186-402 10-201 (563)
109 PRK09111 DNA polymerase III su 99.4 5.3E-12 1.1E-16 133.1 16.1 162 186-402 18-214 (598)
110 PRK08903 DnaA regulatory inact 99.4 6.3E-12 1.4E-16 117.7 13.6 168 185-408 11-186 (227)
111 PRK14971 DNA polymerase III su 99.4 9.9E-12 2.2E-16 131.8 16.6 162 186-402 11-203 (614)
112 PRK00149 dnaA chromosomal repl 99.4 2.6E-12 5.6E-17 132.4 11.9 178 185-408 115-309 (450)
113 PRK14948 DNA polymerase III su 99.4 1.1E-11 2.3E-16 131.6 16.8 159 186-399 10-200 (620)
114 PRK08727 hypothetical protein; 99.4 7.1E-12 1.5E-16 118.0 13.7 166 187-405 14-188 (233)
115 PRK14950 DNA polymerase III su 99.4 1.1E-11 2.3E-16 131.6 16.2 162 186-402 10-202 (585)
116 TIGR00362 DnaA chromosomal rep 99.4 4.9E-12 1.1E-16 128.7 13.1 142 227-407 137-296 (405)
117 TIGR00382 clpX endopeptidase C 99.4 1.1E-11 2.3E-16 125.0 15.2 177 190-390 74-329 (413)
118 PRK00440 rfc replication facto 99.4 1.6E-11 3.6E-16 120.4 15.3 172 179-408 6-191 (319)
119 TIGR01650 PD_CobS cobaltochela 99.3 7.2E-12 1.6E-16 121.9 12.4 130 226-393 64-234 (327)
120 TIGR03346 chaperone_ClpB ATP-d 99.3 3.7E-12 8E-17 140.5 11.5 158 187-394 168-351 (852)
121 TIGR02928 orc1/cdc6 family rep 99.3 3.4E-11 7.4E-16 120.7 16.1 159 190-393 13-213 (365)
122 cd00009 AAA The AAA+ (ATPases 99.3 3E-11 6.6E-16 103.2 13.4 115 226-378 19-151 (151)
123 TIGR02903 spore_lon_C ATP-depe 99.3 3E-11 6.6E-16 128.5 15.5 171 187-409 149-383 (615)
124 PRK14086 dnaA chromosomal repl 99.3 1.6E-11 3.5E-16 128.2 12.9 143 227-408 315-475 (617)
125 PF00308 Bac_DnaA: Bacterial d 99.3 1.6E-11 3.6E-16 114.4 11.7 173 190-408 6-195 (219)
126 CHL00095 clpC Clp protease ATP 99.3 5.8E-12 1.3E-16 138.6 10.0 154 189-392 176-354 (821)
127 PF07728 AAA_5: AAA domain (dy 99.3 4.7E-12 1E-16 109.3 6.8 105 228-370 1-139 (139)
128 PRK05642 DNA replication initi 99.3 3.7E-11 8.1E-16 113.2 13.0 172 187-407 14-194 (234)
129 PRK14088 dnaA chromosomal repl 99.3 1.6E-11 3.4E-16 125.9 11.2 178 185-408 98-292 (440)
130 KOG2028 ATPase related to the 99.3 2.7E-11 5.8E-16 116.8 11.2 152 186-392 132-294 (554)
131 PRK12422 chromosomal replicati 99.3 1.7E-11 3.7E-16 125.5 10.4 142 227-407 142-299 (445)
132 COG0464 SpoVK ATPases of the A 99.3 3.4E-11 7.5E-16 125.6 12.9 155 212-395 4-166 (494)
133 TIGR02639 ClpA ATP-dependent C 99.3 5.3E-11 1.2E-15 129.5 14.8 155 193-394 455-664 (731)
134 PHA02244 ATPase-like protein 99.3 1.3E-10 2.8E-15 114.5 15.4 117 227-383 120-265 (383)
135 PRK13407 bchI magnesium chelat 99.3 1.6E-11 3.5E-16 120.8 9.1 157 187-394 3-218 (334)
136 PRK07471 DNA polymerase III su 99.3 1.7E-10 3.8E-15 115.2 16.6 153 186-393 13-214 (365)
137 PRK06620 hypothetical protein; 99.2 1.3E-10 2.7E-15 108.0 13.8 157 190-407 14-175 (214)
138 COG0714 MoxR-like ATPases [Gen 99.2 1.6E-10 3.4E-15 114.5 14.4 130 226-393 43-204 (329)
139 PRK09112 DNA polymerase III su 99.2 6.4E-10 1.4E-14 110.6 17.6 151 186-391 17-212 (351)
140 PRK00411 cdc6 cell division co 99.2 2.9E-10 6.3E-15 115.2 15.5 158 191-394 29-222 (394)
141 TIGR00678 holB DNA polymerase 99.2 5.2E-10 1.1E-14 101.7 15.3 142 225-414 13-185 (188)
142 PRK10865 protein disaggregatio 99.2 3.1E-10 6.8E-15 125.0 16.3 181 191-414 567-810 (857)
143 CHL00081 chlI Mg-protoporyphyr 99.2 4.7E-11 1E-15 117.9 8.7 153 190-393 15-233 (350)
144 TIGR02030 BchI-ChlI magnesium 99.2 1.3E-10 2.7E-15 114.8 10.8 153 190-393 2-220 (337)
145 PRK14087 dnaA chromosomal repl 99.2 2.5E-10 5.3E-15 117.3 13.0 174 188-408 111-306 (450)
146 PTZ00112 origin recognition co 99.2 6.9E-10 1.5E-14 118.3 16.3 170 192-408 755-965 (1164)
147 PRK05201 hslU ATP-dependent pr 99.2 2.8E-10 6E-15 113.7 12.4 69 193-261 16-85 (443)
148 TIGR00390 hslU ATP-dependent p 99.1 4.1E-10 8.9E-15 112.5 12.9 68 193-260 13-81 (441)
149 PRK05564 DNA polymerase III su 99.1 1.6E-09 3.4E-14 106.6 16.8 148 190-392 2-165 (313)
150 PRK09087 hypothetical protein; 99.1 7.2E-10 1.6E-14 103.8 13.6 130 228-407 46-181 (226)
151 COG2812 DnaX DNA polymerase II 99.1 3.9E-10 8.5E-15 115.8 12.0 164 187-405 11-204 (515)
152 TIGR03346 chaperone_ClpB ATP-d 99.1 1.4E-09 3E-14 120.2 15.5 181 192-414 565-807 (852)
153 TIGR03345 VI_ClpV1 type VI sec 99.1 1.2E-09 2.6E-14 120.2 14.7 158 192-394 566-782 (852)
154 smart00763 AAA_PrkA PrkA AAA d 99.1 2.5E-09 5.4E-14 105.4 15.3 63 190-259 48-118 (361)
155 PRK11331 5-methylcytosine-spec 99.1 1.3E-09 2.8E-14 110.1 13.0 27 226-252 194-220 (459)
156 KOG1969 DNA replication checkp 99.1 6.4E-09 1.4E-13 108.3 17.4 204 179-408 260-498 (877)
157 smart00382 AAA ATPases associa 99.1 1.4E-09 2.9E-14 92.0 10.6 65 227-291 3-92 (148)
158 PRK08116 hypothetical protein; 99.0 1.4E-09 3.1E-14 104.4 11.4 117 226-381 114-251 (268)
159 CHL00095 clpC Clp protease ATP 99.0 2.1E-09 4.5E-14 118.5 14.2 179 192-414 509-763 (821)
160 PRK07952 DNA replication prote 99.0 1.6E-09 3.4E-14 102.4 10.7 97 186-289 66-174 (244)
161 PRK08058 DNA polymerase III su 99.0 3.3E-09 7.2E-14 105.0 13.2 146 190-390 3-180 (329)
162 COG0542 clpA ATP-binding subun 99.0 2.6E-09 5.7E-14 113.9 12.4 176 193-414 492-736 (786)
163 PRK07399 DNA polymerase III su 99.0 1.4E-08 3E-13 99.7 15.7 148 190-393 2-196 (314)
164 PF07726 AAA_3: ATPase family 99.0 6E-10 1.3E-14 93.6 4.8 104 229-370 2-129 (131)
165 TIGR02442 Cob-chelat-sub cobal 99.0 2.3E-09 4.9E-14 114.8 9.9 153 190-393 2-215 (633)
166 TIGR00602 rad24 checkpoint pro 98.9 7.5E-09 1.6E-13 109.6 13.3 66 179-254 73-138 (637)
167 PRK05707 DNA polymerase III su 98.9 2.2E-08 4.8E-13 98.8 15.4 125 225-392 21-178 (328)
168 smart00350 MCM minichromosome 98.9 3.7E-09 8.1E-14 110.5 10.4 126 229-393 239-401 (509)
169 PRK13531 regulatory ATPase Rav 98.9 6.5E-09 1.4E-13 105.9 11.3 128 226-391 39-193 (498)
170 PF07724 AAA_2: AAA domain (Cd 98.9 3.8E-09 8.3E-14 94.6 8.5 65 227-291 4-82 (171)
171 PRK08939 primosomal protein Dn 98.9 6.3E-09 1.4E-13 101.7 10.5 96 189-289 124-229 (306)
172 COG0470 HolB ATPase involved i 98.9 1.4E-08 3E-13 99.8 12.6 117 228-387 26-176 (325)
173 COG1219 ClpX ATP-dependent pro 98.9 4.5E-09 9.7E-14 100.1 8.3 104 190-293 58-178 (408)
174 PRK12377 putative replication 98.9 1.1E-08 2.3E-13 96.9 10.9 64 226-289 101-175 (248)
175 COG0593 DnaA ATPase involved i 98.8 1.9E-08 4.2E-13 100.6 11.1 170 190-407 85-272 (408)
176 PF01078 Mg_chelatase: Magnesi 98.8 1.4E-08 3E-13 92.7 9.2 46 190-250 1-46 (206)
177 PRK08181 transposase; Validate 98.8 1.6E-08 3.5E-13 96.9 10.0 64 226-289 106-179 (269)
178 PRK06964 DNA polymerase III su 98.8 6.9E-08 1.5E-12 95.5 14.0 56 329-391 148-203 (342)
179 PF13177 DNA_pol3_delta2: DNA 98.8 1.1E-07 2.5E-12 84.4 13.9 112 225-379 18-161 (162)
180 PRK11608 pspF phage shock prot 98.8 1.4E-07 3E-12 93.3 14.9 154 190-393 4-195 (326)
181 PRK06526 transposase; Provisio 98.8 1.3E-08 2.8E-13 96.9 7.1 64 226-289 98-171 (254)
182 PRK04132 replication factor C 98.8 8.1E-08 1.8E-12 104.5 14.1 128 229-399 567-709 (846)
183 PRK11388 DNA-binding transcrip 98.8 9.3E-08 2E-12 103.0 14.2 155 190-394 323-512 (638)
184 TIGR02031 BchD-ChlD magnesium 98.7 3.9E-08 8.5E-13 104.4 10.4 129 227-393 17-175 (589)
185 PF01695 IstB_IS21: IstB-like 98.7 1E-08 2.2E-13 92.5 5.0 63 226-288 47-119 (178)
186 COG1474 CDC6 Cdc6-related prot 98.7 1.5E-07 3.2E-12 94.2 13.8 168 194-408 19-221 (366)
187 TIGR02974 phageshock_pspF psp 98.7 2E-07 4.4E-12 92.2 14.5 149 195-393 2-188 (329)
188 PF03215 Rad17: Rad17 cell cyc 98.7 1.7E-07 3.6E-12 97.7 14.3 72 176-257 5-76 (519)
189 TIGR01817 nifA Nif-specific re 98.7 1.9E-07 4.2E-12 98.4 14.9 156 189-394 193-386 (534)
190 PF00158 Sigma54_activat: Sigm 98.7 1.3E-07 2.9E-12 84.4 11.1 85 195-290 2-106 (168)
191 COG1484 DnaC DNA replication p 98.7 1.2E-07 2.6E-12 90.3 10.4 91 191-289 78-179 (254)
192 PRK08699 DNA polymerase III su 98.6 2.4E-07 5.2E-12 91.4 11.8 124 224-390 19-183 (325)
193 PRK06835 DNA replication prote 98.6 1.7E-07 3.6E-12 92.5 10.5 63 227-289 184-258 (329)
194 KOG0991 Replication factor C, 98.6 9.1E-08 2E-12 87.7 7.7 157 185-397 20-190 (333)
195 KOG0745 Putative ATP-dependent 98.6 1.7E-07 3.6E-12 92.8 10.0 66 226-291 226-305 (564)
196 COG0542 clpA ATP-binding subun 98.6 1.7E-07 3.8E-12 100.2 10.9 155 190-393 168-347 (786)
197 PRK06871 DNA polymerase III su 98.6 5.6E-07 1.2E-11 88.5 13.6 123 226-391 24-178 (325)
198 PRK10820 DNA-binding transcrip 98.6 1.5E-06 3.3E-11 91.2 17.3 93 187-290 199-311 (520)
199 PRK09862 putative ATP-dependen 98.6 2.2E-07 4.8E-12 96.2 10.7 118 227-382 211-391 (506)
200 PRK08769 DNA polymerase III su 98.6 1.1E-06 2.3E-11 86.4 14.8 123 225-390 25-183 (319)
201 PRK06921 hypothetical protein; 98.6 2.8E-07 6.1E-12 88.4 10.5 63 226-288 117-188 (266)
202 PRK06090 DNA polymerase III su 98.6 7.5E-07 1.6E-11 87.3 13.4 123 225-390 24-178 (319)
203 KOG0741 AAA+-type ATPase [Post 98.6 2.2E-07 4.8E-12 93.9 9.8 134 227-390 539-684 (744)
204 PF12775 AAA_7: P-loop contain 98.6 1.1E-07 2.5E-12 91.4 7.0 135 226-393 33-194 (272)
205 TIGR00368 Mg chelatase-related 98.6 2.4E-07 5.1E-12 96.3 9.4 48 189-251 189-236 (499)
206 PRK09183 transposase/IS protei 98.5 1.7E-07 3.7E-12 89.6 7.6 64 226-289 102-176 (259)
207 PRK07993 DNA polymerase III su 98.5 8.4E-07 1.8E-11 87.8 12.8 123 225-390 23-178 (334)
208 TIGR02329 propionate_PrpR prop 98.5 9.1E-07 2E-11 92.6 13.6 157 188-394 208-403 (526)
209 PF13173 AAA_14: AAA domain 98.5 3.7E-07 7.9E-12 77.7 8.8 63 227-289 3-73 (128)
210 TIGR03015 pepcterm_ATPase puta 98.5 3.6E-06 7.9E-11 80.5 16.6 51 364-416 179-234 (269)
211 PRK15424 propionate catabolism 98.5 1.3E-06 2.9E-11 91.3 14.4 90 189-290 216-335 (538)
212 PF00910 RNA_helicase: RNA hel 98.5 1.2E-07 2.6E-12 78.2 5.0 62 229-290 1-62 (107)
213 PRK15429 formate hydrogenlyase 98.5 2E-06 4.4E-11 93.4 15.8 91 189-290 373-483 (686)
214 COG1239 ChlI Mg-chelatase subu 98.5 1E-06 2.2E-11 87.6 10.6 156 189-395 14-235 (423)
215 PF01637 Arch_ATPase: Archaeal 98.4 1.5E-06 3.1E-11 80.7 10.8 155 226-417 20-231 (234)
216 PRK05022 anaerobic nitric oxid 98.4 4.8E-06 1E-10 87.4 15.6 89 190-290 185-294 (509)
217 PF14532 Sigma54_activ_2: Sigm 98.4 8.4E-07 1.8E-11 76.5 7.5 76 198-290 4-82 (138)
218 PHA02624 large T antigen; Prov 98.4 1.8E-06 4E-11 89.8 10.0 125 222-378 427-561 (647)
219 COG1120 FepC ABC-type cobalami 98.4 3.3E-07 7.2E-12 86.6 4.2 123 214-352 14-148 (258)
220 PF05729 NACHT: NACHT domain 98.3 5.1E-06 1.1E-10 72.9 11.3 133 228-394 2-165 (166)
221 PF12774 AAA_6: Hydrolytic ATP 98.3 4.7E-06 1E-10 78.2 11.3 65 226-290 32-97 (231)
222 COG1116 TauB ABC-type nitrate/ 98.3 3.2E-06 7E-11 78.8 9.8 45 215-259 16-62 (248)
223 PTZ00111 DNA replication licen 98.3 3.5E-06 7.7E-11 91.7 11.0 126 229-392 495-657 (915)
224 PLN03210 Resistant to P. syrin 98.3 1.2E-05 2.5E-10 92.4 15.3 58 184-252 176-233 (1153)
225 KOG2035 Replication factor C, 98.3 1.3E-05 2.9E-10 75.4 12.7 163 186-404 7-211 (351)
226 KOG0990 Replication factor C, 98.2 3.1E-06 6.6E-11 81.2 7.5 165 179-401 30-212 (360)
227 PF13401 AAA_22: AAA domain; P 98.2 5.3E-06 1.1E-10 70.2 8.2 37 227-263 5-49 (131)
228 PRK10923 glnG nitrogen regulat 98.2 3.7E-05 7.9E-10 79.8 15.5 156 190-394 136-328 (469)
229 PF00931 NB-ARC: NB-ARC domain 98.2 2E-05 4.4E-10 76.0 12.8 143 227-415 20-197 (287)
230 COG1220 HslU ATP-dependent pro 98.2 2.2E-05 4.7E-10 75.9 12.6 69 194-262 17-86 (444)
231 TIGR02915 PEP_resp_reg putativ 98.2 3.7E-05 8.1E-10 79.2 15.4 88 191-290 138-246 (445)
232 PRK05917 DNA polymerase III su 98.2 3.5E-05 7.6E-10 74.4 13.8 122 225-389 18-169 (290)
233 TIGR01818 ntrC nitrogen regula 98.2 4.7E-05 1E-09 78.8 15.6 153 192-394 134-324 (463)
234 COG1221 PspF Transcriptional r 98.2 1.1E-05 2.3E-10 81.0 10.0 158 189-395 75-267 (403)
235 PRK11361 acetoacetate metaboli 98.1 2.3E-05 5.1E-10 80.9 12.8 64 227-290 167-250 (457)
236 KOG1970 Checkpoint RAD17-RFC c 98.1 4.7E-05 1E-09 77.8 14.2 75 176-258 68-142 (634)
237 PF03969 AFG1_ATPase: AFG1-lik 98.1 1.2E-05 2.6E-10 80.4 9.1 31 222-252 58-88 (362)
238 KOG1051 Chaperone HSP104 and r 98.1 2.7E-05 5.9E-10 84.8 11.7 91 193-288 563-671 (898)
239 PHA00729 NTP-binding motif con 98.1 7E-06 1.5E-10 76.3 6.1 29 228-256 19-47 (226)
240 cd00267 ABC_ATPase ABC (ATP-bi 98.1 8.8E-06 1.9E-10 71.6 6.4 74 218-291 15-112 (157)
241 PRK15115 response regulator Gl 98.0 8.8E-05 1.9E-09 76.4 14.1 63 227-290 158-241 (444)
242 PRK05818 DNA polymerase III su 98.0 5.7E-05 1.2E-09 71.6 11.4 113 224-379 5-147 (261)
243 PRK07132 DNA polymerase III su 98.0 7.8E-05 1.7E-09 72.6 12.5 121 226-390 18-160 (299)
244 PRK15455 PrkA family serine pr 98.0 9.7E-06 2.1E-10 84.2 5.9 66 187-259 71-137 (644)
245 PF00493 MCM: MCM2/3/5 family 98.0 4.3E-06 9.2E-11 82.9 3.1 160 193-394 25-223 (331)
246 cd03228 ABCC_MRP_Like The MRP 98.0 2.7E-05 5.8E-10 69.6 8.0 40 218-257 18-59 (171)
247 PRK07276 DNA polymerase III su 98.0 0.00026 5.5E-09 68.6 15.2 119 225-389 23-172 (290)
248 PF13207 AAA_17: AAA domain; P 97.9 7E-06 1.5E-10 68.6 3.5 29 229-257 2-30 (121)
249 cd03216 ABC_Carb_Monos_I This 97.9 3E-05 6.6E-10 68.8 7.8 75 217-291 15-114 (163)
250 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.9 4.4E-05 9.6E-10 66.3 8.3 73 219-291 17-102 (144)
251 PRK13406 bchD magnesium chelat 97.9 4.4E-05 9.5E-10 80.8 9.8 120 227-384 26-174 (584)
252 PF06068 TIP49: TIP49 C-termin 97.9 3.2E-05 7E-10 76.2 8.1 76 191-274 23-105 (398)
253 cd01120 RecA-like_NTPases RecA 97.9 0.00014 2.9E-09 63.3 11.2 22 229-250 2-23 (165)
254 KOG1968 Replication factor C, 97.9 8.9E-05 1.9E-09 81.3 12.1 187 178-407 308-518 (871)
255 cd03246 ABCC_Protease_Secretio 97.8 5.6E-05 1.2E-09 67.7 8.0 41 217-257 17-59 (173)
256 PF05621 TniB: Bacterial TniB 97.8 0.0001 2.2E-09 71.1 10.1 152 202-394 43-229 (302)
257 PRK10365 transcriptional regul 97.8 0.00021 4.5E-09 73.5 13.0 65 226-291 162-247 (441)
258 COG5271 MDN1 AAA ATPase contai 97.8 0.00018 3.9E-09 81.3 12.6 127 226-394 1543-1705(4600)
259 cd03281 ABC_MSH5_euk MutS5 hom 97.8 7.8E-05 1.7E-09 69.2 8.6 21 227-247 30-50 (213)
260 cd03247 ABCC_cytochrome_bd The 97.8 0.00011 2.3E-09 66.1 8.5 43 217-259 17-61 (178)
261 COG4133 CcmA ABC-type transpor 97.8 0.00016 3.6E-09 64.7 9.3 49 213-261 13-63 (209)
262 cd03223 ABCD_peroxisomal_ALDP 97.8 0.00013 2.8E-09 65.0 8.9 38 218-255 17-56 (166)
263 KOG0478 DNA replication licens 97.8 8.4E-05 1.8E-09 77.7 8.6 167 193-390 430-624 (804)
264 COG3829 RocR Transcriptional r 97.7 0.00023 5.1E-09 73.1 11.3 93 185-289 238-352 (560)
265 PRK08118 topology modulation p 97.7 2.6E-05 5.6E-10 69.6 3.7 31 228-258 3-33 (167)
266 cd03222 ABC_RNaseL_inhibitor T 97.7 0.00014 3E-09 65.6 8.4 63 229-291 28-103 (177)
267 PRK00131 aroK shikimate kinase 97.7 3.2E-05 6.9E-10 68.7 4.2 34 225-258 3-36 (175)
268 PF06309 Torsin: Torsin; Inte 97.7 6.3E-05 1.4E-09 63.3 5.6 50 193-250 26-77 (127)
269 TIGR02237 recomb_radB DNA repa 97.7 0.00021 4.6E-09 65.8 9.6 40 222-261 8-50 (209)
270 COG1224 TIP49 DNA helicase TIP 97.7 6.6E-05 1.4E-09 73.2 6.3 58 348-408 321-390 (450)
271 PRK12723 flagellar biosynthesi 97.7 0.00085 1.8E-08 67.7 13.9 25 226-250 174-198 (388)
272 cd03283 ABC_MutS-like MutS-lik 97.7 0.00029 6.3E-09 64.7 9.7 69 223-291 22-119 (199)
273 PRK14722 flhF flagellar biosyn 97.6 0.00017 3.6E-09 72.2 8.5 61 228-288 139-226 (374)
274 COG1241 MCM2 Predicted ATPase 97.6 8E-05 1.7E-09 79.3 6.4 136 229-394 322-485 (682)
275 COG1373 Predicted ATPase (AAA+ 97.6 0.00059 1.3E-08 69.3 12.4 126 228-396 39-184 (398)
276 KOG1514 Origin recognition com 97.6 0.00082 1.8E-08 70.8 12.9 131 229-397 425-594 (767)
277 KOG2227 Pre-initiation complex 97.6 0.00082 1.8E-08 67.8 12.4 175 190-410 148-358 (529)
278 COG5245 DYN1 Dynein, heavy cha 97.6 0.00021 4.5E-09 80.1 8.8 140 223-394 1491-1660(3164)
279 COG1618 Predicted nucleotide k 97.6 0.00046 1E-08 60.3 9.2 23 228-250 7-29 (179)
280 cd03230 ABC_DR_subfamily_A Thi 97.6 0.00021 4.6E-09 63.9 7.4 38 218-255 16-55 (173)
281 PF05707 Zot: Zonular occluden 97.6 9.8E-05 2.1E-09 67.4 5.2 113 229-378 3-145 (193)
282 KOG2228 Origin recognition com 97.6 0.00048 1E-08 66.8 10.0 155 193-394 25-221 (408)
283 PRK03839 putative kinase; Prov 97.6 6.2E-05 1.3E-09 67.7 3.8 30 229-258 3-32 (180)
284 PF13671 AAA_33: AAA domain; P 97.6 5.8E-05 1.3E-09 64.8 3.3 24 229-252 2-25 (143)
285 KOG2170 ATPase of the AAA+ sup 97.6 0.00043 9.4E-09 66.2 9.4 90 193-290 83-191 (344)
286 PRK09376 rho transcription ter 97.6 0.00063 1.4E-08 68.1 11.0 29 224-252 165-195 (416)
287 cd03214 ABC_Iron-Siderophores_ 97.6 0.00022 4.7E-09 64.3 7.1 43 217-259 14-58 (180)
288 cd00464 SK Shikimate kinase (S 97.5 7.6E-05 1.6E-09 65.0 4.0 30 229-258 2-31 (154)
289 PRK13949 shikimate kinase; Pro 97.5 7.7E-05 1.7E-09 66.7 3.7 31 228-258 3-33 (169)
290 PRK00625 shikimate kinase; Pro 97.5 8.8E-05 1.9E-09 66.5 3.9 30 229-258 3-32 (173)
291 PRK13947 shikimate kinase; Pro 97.5 9.3E-05 2E-09 65.8 3.9 32 228-259 3-34 (171)
292 cd01394 radB RadB. The archaea 97.5 0.00077 1.7E-08 62.5 10.1 38 222-259 15-55 (218)
293 TIGR03499 FlhF flagellar biosy 97.5 0.00078 1.7E-08 65.3 10.3 34 228-261 196-234 (282)
294 cd03238 ABC_UvrA The excision 97.5 0.00023 5E-09 64.0 6.2 32 217-248 10-43 (176)
295 PRK07261 topology modulation p 97.5 0.0001 2.2E-09 66.0 3.8 30 229-258 3-32 (171)
296 COG3842 PotA ABC-type spermidi 97.5 3.1E-05 6.7E-10 76.6 0.3 45 216-260 19-65 (352)
297 PHA02774 E1; Provisional 97.5 0.00015 3.3E-09 75.5 5.3 57 223-286 431-488 (613)
298 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.5 0.00011 2.4E-09 68.6 4.0 60 201-260 21-82 (224)
299 PF08298 AAA_PrkA: PrkA AAA do 97.4 0.00057 1.2E-08 67.3 9.0 65 191-262 59-125 (358)
300 COG4619 ABC-type uncharacteriz 97.4 0.00027 5.9E-09 62.2 6.0 73 214-286 15-93 (223)
301 COG1119 ModF ABC-type molybden 97.4 0.00085 1.8E-08 62.6 9.5 25 228-252 59-83 (257)
302 PRK11174 cysteine/glutathione 97.4 0.00048 1E-08 73.6 9.2 44 217-261 365-410 (588)
303 PF14516 AAA_35: AAA-like doma 97.4 0.0019 4.1E-08 64.1 12.6 35 228-262 33-70 (331)
304 TIGR01618 phage_P_loop phage n 97.4 0.00011 2.4E-09 68.4 3.5 22 227-248 13-34 (220)
305 PF13604 AAA_30: AAA domain; P 97.4 0.00062 1.3E-08 62.3 8.4 34 227-260 19-55 (196)
306 COG0606 Predicted ATPase with 97.4 0.00011 2.4E-09 74.5 3.6 48 188-250 175-222 (490)
307 PRK13765 ATP-dependent proteas 97.4 0.00031 6.7E-09 75.1 7.2 51 187-252 26-76 (637)
308 PRK09361 radB DNA repair and r 97.4 0.00069 1.5E-08 63.2 8.7 39 222-260 19-60 (225)
309 COG4555 NatA ABC-type Na+ tran 97.4 0.00081 1.8E-08 61.0 8.5 42 219-260 19-62 (245)
310 PRK13657 cyclic beta-1,2-gluca 97.4 0.0006 1.3E-08 72.9 9.3 44 217-260 350-395 (588)
311 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00015 3.3E-09 65.2 4.0 28 229-256 2-29 (183)
312 PF00437 T2SE: Type II/IV secr 97.4 0.00051 1.1E-08 66.0 7.7 88 189-287 101-207 (270)
313 cd01393 recA_like RecA is a b 97.4 0.00086 1.9E-08 62.4 9.0 29 222-250 15-43 (226)
314 PRK06217 hypothetical protein; 97.4 0.00017 3.6E-09 65.2 4.0 30 229-258 4-33 (183)
315 COG3839 MalK ABC-type sugar tr 97.4 0.00013 2.7E-09 71.9 3.3 44 218-261 19-64 (338)
316 cd02021 GntK Gluconate kinase 97.4 0.00016 3.5E-09 62.8 3.8 28 229-256 2-29 (150)
317 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.4E-09 63.9 3.7 27 229-255 1-27 (163)
318 COG1126 GlnQ ABC-type polar am 97.4 5.1E-05 1.1E-09 69.4 0.4 52 210-261 10-63 (240)
319 PF13191 AAA_16: AAA ATPase do 97.4 0.00014 3E-09 65.1 3.2 37 226-262 24-63 (185)
320 PRK14532 adenylate kinase; Pro 97.3 0.00017 3.7E-09 65.2 3.8 29 229-257 3-31 (188)
321 cd03294 ABC_Pro_Gly_Bertaine T 97.3 0.00018 3.9E-09 69.2 4.1 56 205-260 27-84 (269)
322 TIGR02868 CydC thiol reductant 97.3 0.00098 2.1E-08 70.3 9.9 45 217-261 350-396 (529)
323 PRK14531 adenylate kinase; Pro 97.3 0.00021 4.6E-09 64.6 4.2 30 227-256 3-32 (183)
324 PRK06067 flagellar accessory p 97.3 0.00051 1.1E-08 64.6 6.9 38 222-259 21-61 (234)
325 cd03243 ABC_MutS_homologs The 97.3 0.00075 1.6E-08 61.9 7.9 65 227-291 30-122 (202)
326 TIGR03796 NHPM_micro_ABC1 NHPM 97.3 0.001 2.2E-08 72.8 10.3 46 217-262 494-541 (710)
327 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.3 0.00015 3.3E-09 67.2 3.1 45 217-261 19-65 (218)
328 PRK05057 aroK shikimate kinase 97.3 0.00022 4.8E-09 63.9 4.1 32 227-258 5-36 (172)
329 COG0703 AroK Shikimate kinase 97.3 0.00018 3.8E-09 64.0 3.3 33 227-259 3-35 (172)
330 COG2204 AtoC Response regulato 97.3 0.0027 6E-08 65.0 12.3 89 190-289 139-247 (464)
331 cd01123 Rad51_DMC1_radA Rad51_ 97.3 0.001 2.2E-08 62.3 8.6 28 222-249 15-42 (235)
332 TIGR02857 CydD thiol reductant 97.3 0.001 2.3E-08 70.1 9.6 45 217-261 337-383 (529)
333 TIGR00764 lon_rel lon-related 97.3 0.00061 1.3E-08 72.9 7.9 50 189-253 15-64 (608)
334 cd02020 CMPK Cytidine monophos 97.3 0.00022 4.8E-09 61.4 3.7 30 229-258 2-31 (147)
335 PRK10790 putative multidrug tr 97.3 0.00092 2E-08 71.5 9.3 45 217-261 356-402 (592)
336 PRK12608 transcription termina 97.3 0.0014 3E-08 65.4 9.7 24 229-252 136-159 (380)
337 TIGR03608 L_ocin_972_ABC putat 97.3 6.2E-05 1.3E-09 69.2 0.2 45 217-261 13-59 (206)
338 PRK13948 shikimate kinase; Pro 97.3 0.00027 5.9E-09 63.9 4.3 34 225-258 9-42 (182)
339 COG4604 CeuD ABC-type enteroch 97.3 0.0006 1.3E-08 61.6 6.4 67 206-272 5-77 (252)
340 cd01428 ADK Adenylate kinase ( 97.3 0.00024 5.1E-09 64.4 3.8 29 229-257 2-30 (194)
341 cd01128 rho_factor Transcripti 97.3 0.0014 3E-08 62.3 9.0 58 229-288 19-79 (249)
342 TIGR02315 ABC_phnC phosphonate 97.3 0.0001 2.2E-09 69.6 1.2 45 217-261 17-63 (243)
343 COG4608 AppF ABC-type oligopep 97.3 0.00071 1.5E-08 64.1 6.9 42 220-261 31-74 (268)
344 COG2274 SunT ABC-type bacterio 97.3 0.0013 2.8E-08 71.3 9.8 46 217-262 488-535 (709)
345 PRK05800 cobU adenosylcobinami 97.3 0.0006 1.3E-08 61.0 6.1 34 229-262 4-37 (170)
346 KOG0480 DNA replication licens 97.3 0.00063 1.4E-08 70.8 7.0 170 191-394 344-544 (764)
347 COG1124 DppF ABC-type dipeptid 97.2 7.8E-05 1.7E-09 69.3 0.4 45 217-261 22-68 (252)
348 TIGR01166 cbiO cobalt transpor 97.2 0.00021 4.5E-09 64.9 3.2 45 217-261 7-53 (190)
349 PRK11889 flhF flagellar biosyn 97.2 0.0055 1.2E-07 61.6 13.3 34 227-260 242-278 (436)
350 TIGR01846 type_I_sec_HlyB type 97.2 0.0012 2.6E-08 72.1 9.5 45 217-261 472-518 (694)
351 KOG3347 Predicted nucleotide k 97.2 0.00027 5.9E-09 60.8 3.5 31 227-257 8-38 (176)
352 TIGR03375 type_I_sec_LssB type 97.2 0.0012 2.5E-08 72.2 9.4 44 217-260 480-525 (694)
353 TIGR01360 aden_kin_iso1 adenyl 97.2 0.0003 6.6E-09 63.3 4.1 28 228-255 5-32 (188)
354 TIGR03797 NHPM_micro_ABC2 NHPM 97.2 0.0014 2.9E-08 71.5 9.8 45 217-261 468-514 (686)
355 PF00005 ABC_tran: ABC transpo 97.2 0.00013 2.7E-09 62.3 1.4 40 223-262 6-47 (137)
356 cd03225 ABC_cobalt_CbiO_domain 97.2 8.5E-05 1.8E-09 68.5 0.3 45 217-261 16-62 (211)
357 PRK08154 anaerobic benzoate ca 97.2 0.00054 1.2E-08 67.3 6.0 57 197-258 109-165 (309)
358 PF13245 AAA_19: Part of AAA d 97.2 0.00081 1.7E-08 51.8 5.7 22 229-250 13-35 (76)
359 COG2884 FtsE Predicted ATPase 97.2 0.0012 2.6E-08 59.4 7.4 49 214-262 14-64 (223)
360 cd03269 ABC_putative_ATPase Th 97.2 0.00023 4.9E-09 65.7 3.1 45 217-261 15-61 (210)
361 cd00983 recA RecA is a bacter 97.2 0.0013 2.7E-08 64.8 8.3 70 222-291 51-147 (325)
362 COG1118 CysA ABC-type sulfate/ 97.2 0.00029 6.3E-09 67.6 3.7 44 218-261 18-63 (345)
363 PRK10247 putative ABC transpor 97.2 0.00012 2.6E-09 68.4 1.2 44 217-260 22-67 (225)
364 TIGR00767 rho transcription te 97.2 0.0017 3.6E-08 65.4 9.2 29 223-251 163-193 (415)
365 PRK06762 hypothetical protein; 97.2 0.00039 8.5E-09 61.5 4.4 32 227-258 3-34 (166)
366 TIGR02012 tigrfam_recA protein 97.2 0.0014 3E-08 64.5 8.5 28 222-249 51-78 (321)
367 COG1855 ATPase (PilT family) [ 97.2 0.00041 8.9E-09 69.6 4.8 45 190-252 245-289 (604)
368 PRK14530 adenylate kinase; Pro 97.2 0.00033 7.2E-09 65.0 4.0 29 228-256 5-33 (215)
369 cd03301 ABC_MalK_N The N-termi 97.2 0.00025 5.5E-09 65.5 3.2 44 217-260 15-60 (213)
370 PF05272 VirE: Virulence-assoc 97.2 0.00055 1.2E-08 62.8 5.3 61 222-290 48-108 (198)
371 cd03267 ABC_NatA_like Similar 97.2 0.00035 7.5E-09 65.8 4.1 49 213-261 32-82 (236)
372 PRK13946 shikimate kinase; Pro 97.2 0.00032 6.8E-09 63.5 3.7 34 226-259 10-43 (184)
373 PRK04841 transcriptional regul 97.2 0.0079 1.7E-07 67.5 15.6 33 227-260 33-65 (903)
374 TIGR03410 urea_trans_UrtE urea 97.2 0.00022 4.7E-09 66.8 2.7 45 217-261 15-61 (230)
375 cd03292 ABC_FtsE_transporter F 97.2 0.00027 6E-09 65.2 3.3 45 217-261 16-62 (214)
376 PF10443 RNA12: RNA12 protein; 97.2 0.0044 9.5E-08 62.6 11.9 45 349-395 186-232 (431)
377 TIGR02673 FtsE cell division A 97.2 0.00029 6.3E-09 65.1 3.4 45 217-261 17-63 (214)
378 cd03235 ABC_Metallic_Cations A 97.2 0.00012 2.5E-09 67.7 0.7 44 217-260 14-59 (213)
379 PRK02496 adk adenylate kinase; 97.2 0.00037 8E-09 62.9 4.0 29 229-257 4-32 (184)
380 cd03226 ABC_cobalt_CbiO_domain 97.2 0.00029 6.4E-09 64.7 3.4 45 217-261 15-61 (205)
381 smart00534 MUTSac ATPase domai 97.2 0.0013 2.8E-08 59.5 7.5 63 229-291 2-92 (185)
382 cd03258 ABC_MetN_methionine_tr 97.2 0.00014 3.1E-09 68.2 1.2 45 217-261 20-66 (233)
383 PRK05703 flhF flagellar biosyn 97.2 0.0071 1.5E-07 62.0 13.6 35 227-261 222-261 (424)
384 cd03261 ABC_Org_Solvent_Resist 97.1 0.00031 6.7E-09 66.0 3.3 45 217-261 15-61 (235)
385 cd02019 NK Nucleoside/nucleoti 97.1 0.00069 1.5E-08 51.0 4.6 22 229-250 2-23 (69)
386 cd03263 ABC_subfamily_A The AB 97.1 0.00031 6.7E-09 65.2 3.3 45 217-261 17-63 (220)
387 PRK03731 aroL shikimate kinase 97.1 0.00044 9.6E-09 61.5 4.1 31 228-258 4-34 (171)
388 TIGR00960 3a0501s02 Type II (G 97.1 0.00032 7E-09 64.9 3.3 45 217-261 18-64 (216)
389 cd03265 ABC_DrrA DrrA is the A 97.1 0.00032 6.9E-09 65.2 3.2 45 217-261 15-61 (220)
390 COG1102 Cmk Cytidylate kinase 97.1 0.00041 8.9E-09 60.6 3.5 28 229-256 3-30 (179)
391 cd03259 ABC_Carb_Solutes_like 97.1 0.00034 7.4E-09 64.6 3.3 44 217-260 15-60 (213)
392 TIGR01192 chvA glucan exporter 97.1 0.0017 3.7E-08 69.4 9.1 43 218-260 351-395 (585)
393 cd03227 ABC_Class2 ABC-type Cl 97.1 0.0012 2.5E-08 58.5 6.6 65 227-291 22-113 (162)
394 cd03262 ABC_HisP_GlnQ_permease 97.1 0.00035 7.7E-09 64.4 3.4 44 218-261 16-61 (213)
395 cd03257 ABC_NikE_OppD_transpor 97.1 0.00034 7.4E-09 65.2 3.3 45 217-261 20-66 (228)
396 cd03224 ABC_TM1139_LivF_branch 97.1 0.0003 6.4E-09 65.4 2.8 45 217-261 15-61 (222)
397 TIGR00150 HI0065_YjeE ATPase, 97.1 0.0004 8.8E-09 59.3 3.3 26 228-253 24-49 (133)
398 cd03260 ABC_PstB_phosphate_tra 97.1 0.00043 9.4E-09 64.6 3.8 45 217-261 15-66 (227)
399 PRK11124 artP arginine transpo 97.1 0.00035 7.6E-09 65.9 3.2 45 217-261 17-63 (242)
400 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.00078 1.7E-08 61.8 5.4 20 228-247 30-49 (200)
401 COG1936 Predicted nucleotide k 97.1 0.00034 7.3E-09 61.8 2.8 28 229-257 3-30 (180)
402 TIGR02858 spore_III_AA stage I 97.1 0.0011 2.3E-08 63.8 6.5 28 227-254 112-139 (270)
403 cd03293 ABC_NrtD_SsuB_transpor 97.1 0.00038 8.2E-09 64.7 3.3 44 217-260 19-64 (220)
404 PRK13540 cytochrome c biogenes 97.1 0.00035 7.5E-09 64.0 3.0 45 217-261 16-62 (200)
405 PRK06547 hypothetical protein; 97.1 0.00047 1E-08 61.8 3.7 32 226-257 15-46 (172)
406 COG0563 Adk Adenylate kinase a 97.1 0.0005 1.1E-08 62.0 3.9 25 229-253 3-27 (178)
407 cd03219 ABC_Mj1267_LivG_branch 97.1 0.00038 8.2E-09 65.3 3.2 45 217-261 15-61 (236)
408 cd03296 ABC_CysA_sulfate_impor 97.1 0.00035 7.6E-09 65.8 3.0 44 217-260 17-62 (239)
409 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0022 4.7E-08 59.9 8.2 63 227-289 32-122 (222)
410 cd03229 ABC_Class3 This class 97.1 0.00045 9.7E-09 62.1 3.5 43 217-259 15-59 (178)
411 cd03218 ABC_YhbG The ABC trans 97.1 0.00037 8E-09 65.2 3.0 44 217-260 15-60 (232)
412 PRK11823 DNA repair protein Ra 97.1 0.0024 5.3E-08 65.9 9.3 70 222-291 76-170 (446)
413 PF13086 AAA_11: AAA domain; P 97.1 0.00038 8.3E-09 64.3 3.1 22 229-250 20-41 (236)
414 PRK11629 lolD lipoprotein tran 97.1 0.00039 8.5E-09 65.2 3.2 45 217-261 24-70 (233)
415 TIGR02211 LolD_lipo_ex lipopro 97.1 0.00039 8.5E-09 64.6 3.1 45 217-261 20-66 (221)
416 PRK10584 putative ABC transpor 97.1 0.00045 9.7E-09 64.5 3.5 44 218-261 26-71 (228)
417 cd03264 ABC_drug_resistance_li 97.1 0.00045 9.8E-09 63.7 3.4 44 218-261 16-60 (211)
418 PRK14528 adenylate kinase; Pro 97.1 0.00054 1.2E-08 62.2 3.8 28 229-256 4-31 (186)
419 cd03215 ABC_Carb_Monos_II This 97.0 0.00042 9.2E-09 62.5 3.1 43 217-259 15-59 (182)
420 cd01129 PulE-GspE PulE/GspE Th 97.0 0.0022 4.9E-08 61.5 8.3 84 189-287 57-159 (264)
421 cd03282 ABC_MSH4_euk MutS4 hom 97.0 0.0026 5.6E-08 58.7 8.3 22 227-248 30-51 (204)
422 cd03213 ABCG_EPDR ABCG transpo 97.0 0.00051 1.1E-08 62.7 3.6 42 217-258 24-69 (194)
423 PRK10895 lipopolysaccharide AB 97.0 0.00036 7.8E-09 65.8 2.7 45 217-261 18-64 (241)
424 TIGR02688 conserved hypothetic 97.0 0.0029 6.4E-08 63.9 9.2 63 226-289 209-272 (449)
425 COG1117 PstB ABC-type phosphat 97.0 0.0002 4.4E-09 65.4 0.8 44 207-250 12-57 (253)
426 COG4525 TauB ABC-type taurine 97.0 0.00062 1.3E-08 61.4 3.9 44 218-261 21-66 (259)
427 PRK11247 ssuB aliphatic sulfon 97.0 0.00043 9.4E-09 66.1 3.2 43 217-259 27-71 (257)
428 cd03266 ABC_NatA_sodium_export 97.0 0.00045 9.7E-09 64.0 3.2 45 217-261 20-66 (218)
429 cd03256 ABC_PhnC_transporter A 97.0 0.00048 1E-08 64.8 3.4 44 217-260 16-61 (241)
430 TIGR01351 adk adenylate kinase 97.0 0.00058 1.3E-08 63.1 3.9 28 229-256 2-29 (210)
431 PRK06696 uridine kinase; Valid 97.0 0.0018 3.8E-08 60.5 7.2 36 228-263 24-62 (223)
432 PF13555 AAA_29: P-loop contai 97.0 0.00069 1.5E-08 49.8 3.4 22 229-250 26-47 (62)
433 PTZ00088 adenylate kinase 1; P 97.0 0.00057 1.2E-08 64.1 3.8 29 229-257 9-37 (229)
434 cd03254 ABCC_Glucan_exporter_l 97.0 0.00048 1E-08 64.4 3.3 44 217-260 18-63 (229)
435 cd00227 CPT Chloramphenicol (C 97.0 0.00048 1E-08 61.7 3.2 31 227-257 3-33 (175)
436 TIGR03864 PQQ_ABC_ATP ABC tran 97.0 0.00046 1E-08 64.9 3.2 44 217-260 16-61 (236)
437 PRK10078 ribose 1,5-bisphospho 97.0 0.00057 1.2E-08 61.9 3.7 28 228-255 4-31 (186)
438 PRK11248 tauB taurine transpor 97.0 0.00045 9.8E-09 65.9 3.1 42 217-258 16-59 (255)
439 PF02367 UPF0079: Uncharacteri 97.0 0.0008 1.7E-08 56.7 4.2 61 229-289 18-100 (123)
440 PRK10908 cell division protein 97.0 0.00052 1.1E-08 63.9 3.4 45 217-261 17-63 (222)
441 TIGR03005 ectoine_ehuA ectoine 97.0 0.00045 9.7E-09 65.6 3.0 44 217-260 15-60 (252)
442 TIGR01188 drrA daunorubicin re 97.0 0.00045 9.7E-09 67.6 3.1 45 217-261 8-54 (302)
443 PRK13764 ATPase; Provisional 97.0 0.0019 4.2E-08 68.4 8.0 26 226-251 257-282 (602)
444 TIGR03411 urea_trans_UrtD urea 97.0 0.00015 3.3E-09 68.4 -0.2 45 217-261 17-63 (242)
445 PRK11264 putative amino-acid A 97.0 0.00054 1.2E-08 64.9 3.6 44 217-260 18-63 (250)
446 cd03268 ABC_BcrA_bacitracin_re 97.0 0.0005 1.1E-08 63.3 3.2 45 217-261 15-61 (208)
447 PF04665 Pox_A32: Poxvirus A32 97.0 0.013 2.8E-07 55.2 12.6 45 348-395 129-173 (241)
448 TIGR02782 TrbB_P P-type conjug 97.0 0.003 6.5E-08 61.7 8.8 25 226-250 132-156 (299)
449 PRK00279 adk adenylate kinase; 97.0 0.00066 1.4E-08 63.0 4.0 29 229-257 3-31 (215)
450 PRK09493 glnQ glutamine ABC tr 97.0 0.00053 1.1E-08 64.6 3.3 45 217-261 16-62 (240)
451 TIGR02770 nickel_nikD nickel i 97.0 0.00058 1.3E-08 64.0 3.6 41 220-260 4-50 (230)
452 PF13238 AAA_18: AAA domain; P 97.0 0.0005 1.1E-08 57.5 2.8 22 229-250 1-22 (129)
453 cd01121 Sms Sms (bacterial rad 97.0 0.0033 7E-08 63.3 9.1 69 222-290 78-171 (372)
454 PRK13638 cbiO cobalt transport 97.0 0.00052 1.1E-08 66.0 3.3 44 217-260 16-61 (271)
455 PRK13538 cytochrome c biogenes 97.0 0.00043 9.3E-09 63.6 2.6 44 217-260 16-61 (204)
456 cd03250 ABCC_MRP_domain1 Domai 97.0 0.0005 1.1E-08 63.1 3.1 43 217-259 20-64 (204)
457 PRK11701 phnK phosphonate C-P 97.0 0.00044 9.5E-09 66.0 2.8 45 217-261 21-67 (258)
458 PRK13543 cytochrome c biogenes 97.0 0.00053 1.1E-08 63.6 3.2 45 217-261 26-72 (214)
459 TIGR01184 ntrCD nitrate transp 97.0 0.00055 1.2E-08 64.2 3.3 39 221-259 4-44 (230)
460 COG3854 SpoIIIAA ncharacterize 97.0 0.0022 4.8E-08 59.3 7.1 25 228-252 139-163 (308)
461 PRK13546 teichoic acids export 97.0 0.00078 1.7E-08 64.6 4.4 41 215-255 37-79 (264)
462 PLN02200 adenylate kinase fami 97.0 0.00081 1.8E-08 63.3 4.3 27 228-254 45-71 (234)
463 COG1122 CbiO ABC-type cobalt t 97.0 0.0024 5.1E-08 60.2 7.4 42 220-261 22-65 (235)
464 PRK04182 cytidylate kinase; Pr 97.0 0.00074 1.6E-08 60.2 3.8 28 229-256 3-30 (180)
465 cd03248 ABCC_TAP TAP, the Tran 97.0 0.00067 1.4E-08 63.3 3.7 44 218-261 30-75 (226)
466 cd03234 ABCG_White The White s 97.0 0.00072 1.6E-08 63.1 3.9 44 218-261 23-71 (226)
467 PRK11300 livG leucine/isoleuci 97.0 0.00052 1.1E-08 65.2 3.0 44 218-261 21-66 (255)
468 cd03244 ABCC_MRP_domain2 Domai 96.9 0.00064 1.4E-08 63.1 3.4 45 217-261 19-65 (221)
469 TIGR02323 CP_lyasePhnK phospho 96.9 0.00059 1.3E-08 64.8 3.3 44 218-261 19-64 (253)
470 PRK13548 hmuV hemin importer A 96.9 0.00049 1.1E-08 65.7 2.7 44 217-260 17-62 (258)
471 PRK14527 adenylate kinase; Pro 96.9 0.00057 1.2E-08 62.1 3.0 28 228-255 8-35 (191)
472 COG1485 Predicted ATPase [Gene 96.9 0.0027 5.7E-08 62.3 7.7 30 224-253 63-92 (367)
473 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.9 0.00055 1.2E-08 64.4 3.0 43 217-259 18-62 (238)
474 cd00544 CobU Adenosylcobinamid 96.9 0.003 6.6E-08 56.4 7.6 33 229-261 2-34 (169)
475 cd03290 ABCC_SUR1_N The SUR do 96.9 0.00059 1.3E-08 63.3 3.1 44 217-260 16-61 (218)
476 cd03300 ABC_PotA_N PotA is an 96.9 0.00075 1.6E-08 63.3 3.8 43 217-259 15-59 (232)
477 cd03251 ABCC_MsbA MsbA is an e 96.9 0.00061 1.3E-08 63.9 3.2 43 217-259 17-61 (234)
478 COG2874 FlaH Predicted ATPases 96.9 0.0031 6.8E-08 57.7 7.5 36 213-248 13-50 (235)
479 PRK14250 phosphate ABC transpo 96.9 0.0006 1.3E-08 64.4 3.1 43 218-260 19-63 (241)
480 COG1127 Ttg2A ABC-type transpo 96.9 0.00056 1.2E-08 63.6 2.7 54 209-262 15-70 (263)
481 cd03369 ABCC_NFT1 Domain 2 of 96.9 0.00073 1.6E-08 62.2 3.5 43 218-260 24-68 (207)
482 TIGR01288 nodI ATP-binding ABC 96.9 0.00061 1.3E-08 66.7 3.2 44 217-260 19-64 (303)
483 TIGR02769 nickel_nikE nickel i 96.9 0.00064 1.4E-08 65.2 3.2 45 217-261 26-72 (265)
484 PF00406 ADK: Adenylate kinase 96.9 0.00059 1.3E-08 59.5 2.8 25 231-255 1-25 (151)
485 cd03252 ABCC_Hemolysin The ABC 96.9 0.00061 1.3E-08 64.0 3.0 44 217-260 17-62 (237)
486 cd03245 ABCC_bacteriocin_expor 96.9 0.00065 1.4E-08 63.0 3.2 44 217-260 19-64 (220)
487 PRK15112 antimicrobial peptide 96.9 0.00063 1.4E-08 65.3 3.2 44 217-260 28-73 (267)
488 PF13521 AAA_28: AAA domain; P 96.9 0.00073 1.6E-08 59.7 3.3 26 229-255 2-27 (163)
489 PRK13632 cbiO cobalt transport 96.9 0.00069 1.5E-08 65.2 3.4 44 217-260 24-69 (271)
490 PRK11650 ugpC glycerol-3-phosp 96.9 0.0007 1.5E-08 67.8 3.6 43 218-260 20-64 (356)
491 TIGR01189 ccmA heme ABC export 96.9 0.00061 1.3E-08 62.3 2.8 44 217-260 15-60 (198)
492 PRK04040 adenylate kinase; Pro 96.9 0.00085 1.8E-08 61.0 3.7 27 228-254 4-32 (188)
493 PRK13648 cbiO cobalt transport 96.9 0.00075 1.6E-08 64.8 3.6 44 218-261 25-70 (269)
494 PRK14526 adenylate kinase; Pro 96.9 0.00093 2E-08 61.9 4.0 27 229-255 3-29 (211)
495 PRK13649 cbiO cobalt transport 96.9 0.00069 1.5E-08 65.4 3.3 43 218-260 23-67 (280)
496 PRK13539 cytochrome c biogenes 96.9 0.00071 1.5E-08 62.3 3.2 43 218-260 18-62 (207)
497 cd03253 ABCC_ATM1_transporter 96.9 0.00068 1.5E-08 63.6 3.1 43 218-260 17-61 (236)
498 COG4559 ABC-type hemin transpo 96.9 0.00034 7.5E-09 63.8 1.1 51 213-263 12-64 (259)
499 COG1121 ZnuC ABC-type Mn/Zn tr 96.9 0.00073 1.6E-08 63.9 3.3 43 217-259 19-63 (254)
500 cd01130 VirB11-like_ATPase Typ 96.9 0.0014 2.9E-08 59.5 5.0 28 226-253 25-52 (186)
No 1
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-100 Score=749.22 Aligned_cols=396 Identities=47% Similarity=0.764 Sum_probs=368.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhhccCCceEEEEeecCCccCchhhHHHHHHHhCCCCCCcc
Q 040638 5 TTMMFVAASAAATFMLIQSYARQYLPDEVSSYFDQKFKNFIARIYSELTLVIEEYDDGLNRNKLFKAAKLCLEPKIPPNV 84 (419)
Q Consensus 5 ~~~~~~~~S~~a~~m~~~~~~~~~~P~~l~~~~~~~~~~~~~~~~~~~ti~i~e~~~g~~~n~~y~a~~~YL~t~~~~~~ 84 (419)
+++|+++||.+|++|++|+|+++++|.+++.|+.+++.+|++.++++.++.|.|+ +|+.+|++|.|+|+||++++++.+
T Consensus 1 ~~~~~~~~s~~~~~~~~~~~~~~~~p~~~~~y~~~~~~~l~g~~s~~~~~~~~e~-~g~~~n~~~~aie~yl~~k~~~~~ 79 (457)
T KOG0743|consen 1 SSVFTAYASLLGSLMFIKSMLQDIIPPSINPYFISALRGLFGVFSSYALIRIGEQ-DGVFRNQLYVAIEVYLSSKSSAIA 79 (457)
T ss_pred CCccchhHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHhhccCcccEEEEeehh-ccchHHHHHHHHHHhhhccchhhh
Confidence 3579999999999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred CeeeeecCCCCCceeEeccCCceEEEeecCeEEEEEEeeecCCCc----------cccCCCcchHHHHHHHhhhhHHHhh
Q 040638 85 NRIKINLPKKESEVSLSVEKNQAVVDVFNGVRLKWKFELKPAPDQ----------ELCNNGNYIIKETVLGTYIPHILKK 154 (419)
Q Consensus 85 ~rl~~~~~~~~~~~~~~~~~~~~~~d~~~g~~~~w~~~~~~~~~~----------~~~~~~~~~~~~~~l~~yl~~v~~~ 154 (419)
.|++.+...+++++.+.++++++|.|+|+|++++|.+++..++.. ......+++|++.|+.+||+|+..+
T Consensus 80 ~rl~~~~~~~s~~~~l~~~~~~~i~d~f~gv~~~w~~~~~~~~~~~~~~~~~~~r~~~L~f~k~~~e~V~~syl~~v~~~ 159 (457)
T KOG0743|consen 80 KRLTQNLSKNSKSLVLGLDDNEEISDEFEGVPVKWRHFVDYNEKWIFVEREREKRYFELTFHKKPRELVTLSYLPYVVSK 159 (457)
T ss_pred hhhhhhhccccccceEEecCCcEEEEEEeceEEEEEEEEEecCcccccccCCcceEEEEEecCccHHHhHHhHHHHHHHH
Confidence 999999999999999999999999999999999999998755443 1122338999999999999999999
Q ss_pred chhhhhccceEEEEeeccC--CC--CCCCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceE
Q 040638 155 SKELSKKKKTLKLFTLSSN--RI--NHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYL 230 (419)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~--~~--~~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~L 230 (419)
+++|..++|.+++|++++. .+ .+..|+++.++||+||+||+|++++|++|++||..|.+++++|+++|++|+||||
T Consensus 160 ~k~I~~~~r~~kl~t~~~~~~~~~~~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYL 239 (457)
T KOG0743|consen 160 AKEILEENRELKLYTNSGKTVIYTAKGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYL 239 (457)
T ss_pred HHHHHHHHHHHHHhhcCCCcccccccCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccce
Confidence 9999999999999999863 22 4679999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcc
Q 040638 231 LFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPR 310 (419)
Q Consensus 231 L~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~ 310 (419)
|||||||||||||+||||+|++++|+|+++++..+.+|++++..++++||||||||||.++++++..........
T Consensus 240 LYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~----- 314 (457)
T KOG0743|consen 240 LYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEG----- 314 (457)
T ss_pred eeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCCCCcEEEEeecccccccccccccccccccC-----
Confidence 999999999999999999999999999999999999999999999999999999999999988877654332200
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 311 RDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
....+|+|||||++||+||+||++|||||||||+|+|||||+||||||+||+|+||+++++++|++|
T Consensus 315 -------------~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~n 381 (457)
T KOG0743|consen 315 -------------DLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASN 381 (457)
T ss_pred -------------CcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHH
Confidence 1246999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCC-CCChHHHHHHHhcCCCCcccccC
Q 040638 391 YLGITE-HPLFSEVEELIEQTKVTPAEVAE 419 (419)
Q Consensus 391 ~l~~~~-~~l~~~i~~l~~~~~~tpa~v~e 419 (419)
||+.++ |+++++|+++++++.+|||||+|
T Consensus 382 YL~~~~~h~L~~eie~l~~~~~~tPA~V~e 411 (457)
T KOG0743|consen 382 YLGIEEDHRLFDEIERLIEETEVTPAQVAE 411 (457)
T ss_pred hcCCCCCcchhHHHHHHhhcCccCHHHHHH
Confidence 999975 99999999999999999999986
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-42 Score=330.41 Aligned_cols=207 Identities=25% Similarity=0.348 Sum_probs=175.3
Q ss_pred cCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc--
Q 040638 186 DHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV-- 262 (419)
Q Consensus 186 ~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~-- 262 (419)
+.|. |+++++|.++++++|.+.++.++.+|+.|.++|+.+|+|+|||||||||||.||+|+|+..+..++.+..+.+
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 4555 9999999999999999999999999999999999999999999999999999999999999999999998886
Q ss_pred ----CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 263 ----EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 263 ----~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
++..-+|++|.-+ ..||||||||||++...+ .+.+.+ .+ .+-++|+.+|||.
T Consensus 224 KYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR--~d~~t~-------gD-------------rEVQRTmleLL~q 281 (406)
T COG1222 224 KYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKR--FDSGTS-------GD-------------REVQRTMLELLNQ 281 (406)
T ss_pred HHhccchHHHHHHHHHHhhcCCeEEEEechhhhhccc--ccCCCC-------ch-------------HHHHHHHHHHHHh
Confidence 3556678888655 679999999999998733 222111 01 2358999999999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCC---ChHHHHHHHhcCCCC
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHP---LFSEVEELIEQTKVT 413 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~---l~~~i~~l~~~~~~t 413 (419)
|||+-. .+++-||++||+++.|||||+||||||++|+||.|+.+.|++|++-|...-... -++.+..+.++ +|
T Consensus 282 lDGFD~--~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g--~s 357 (406)
T COG1222 282 LDGFDP--RGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEG--FS 357 (406)
T ss_pred ccCCCC--CCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCC--Cc
Confidence 999954 477999999999999999999999999999999999999999999998864322 24444444444 99
Q ss_pred ccccc
Q 040638 414 PAEVA 418 (419)
Q Consensus 414 pa~v~ 418 (419)
+|||.
T Consensus 358 GAdlk 362 (406)
T COG1222 358 GADLK 362 (406)
T ss_pred hHHHH
Confidence 99874
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-38 Score=323.71 Aligned_cols=216 Identities=24% Similarity=0.355 Sum_probs=185.5
Q ss_pred CCCCceeeeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 176 NHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 176 ~~~~w~~~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
.+...+++..+-|. +|++++|.+++|++|.+.+.+++++++.|.++|+.+++|+|||||||||||++++|+|++.+.++
T Consensus 417 ~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nF 496 (693)
T KOG0730|consen 417 RPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNF 496 (693)
T ss_pred CchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCe
Confidence 44455666666665 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccc------CChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 255 YDLELSSV------EGNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 255 ~~l~l~~~------~~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
..+....+ +++..++++|.++. .|||||+||||++...++ +...+ ..
T Consensus 497 lsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~--g~~~~-----------------------v~ 551 (693)
T KOG0730|consen 497 LSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRG--GSSSG-----------------------VT 551 (693)
T ss_pred eeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccC--CCccc-----------------------hH
Confidence 99987766 46789999998875 599999999999987333 21111 13
Q ss_pred HHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHH
Q 040638 327 ILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEEL 406 (419)
Q Consensus 327 ~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l 406 (419)
.+.+++||++|||+... ..++||++||+|+.||+||+||||||..|++|.|+.++|.+|++.++.....+-.-+++.+
T Consensus 552 ~RVlsqLLtEmDG~e~~--k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~L 629 (693)
T KOG0730|consen 552 DRVLSQLLTEMDGLEAL--KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEEL 629 (693)
T ss_pred HHHHHHHHHHccccccc--CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHH
Confidence 67899999999999653 5699999999999999999999999999999999999999999999997654444567777
Q ss_pred HhcC-CCCccccc
Q 040638 407 IEQT-KVTPAEVA 418 (419)
Q Consensus 407 ~~~~-~~tpa~v~ 418 (419)
.+.+ +||+|||.
T Consensus 630 a~~T~g~SGAel~ 642 (693)
T KOG0730|consen 630 AQATEGYSGAEIV 642 (693)
T ss_pred HHHhccCChHHHH
Confidence 7655 59999985
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=311.24 Aligned_cols=216 Identities=22% Similarity=0.307 Sum_probs=183.0
Q ss_pred CCCCceeeeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 176 NHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 176 ~~~~w~~~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
++..-++...+-|. +|++++++++++.++...+.++.++++.|+++|+..|.|+|||||||||||.||+|+||+.+.++
T Consensus 494 QPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NF 573 (802)
T KOG0733|consen 494 QPSAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANF 573 (802)
T ss_pred CcchhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCce
Confidence 34444555555666 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccc------CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 255 YDLELSSV------EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 255 ~~l~l~~~------~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
+.+....+ +++..+|.+|.++ ..|||||+||||++.+.++... . ...
T Consensus 574 isVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~--s-----------------------~~s 628 (802)
T KOG0733|consen 574 ISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG--S-----------------------SVS 628 (802)
T ss_pred EeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC--c-----------------------hhH
Confidence 99988776 4678899999876 5699999999999988443322 1 124
Q ss_pred HHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCC-----hH
Q 040638 327 ILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPL-----FS 401 (419)
Q Consensus 327 ~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l-----~~ 401 (419)
.+.+++||.+|||+.... ++.||++||+|+.||||++||||||..+++++|+.++|..|++........++ ++
T Consensus 629 ~RvvNqLLtElDGl~~R~--gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~ 706 (802)
T KOG0733|consen 629 SRVVNQLLTELDGLEERR--GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLD 706 (802)
T ss_pred HHHHHHHHHHhccccccc--ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHH
Confidence 688999999999996553 48999999999999999999999999999999999999999999998644444 34
Q ss_pred HHHHHHhcCCCCccccc
Q 040638 402 EVEELIEQTKVTPAEVA 418 (419)
Q Consensus 402 ~i~~l~~~~~~tpa~v~ 418 (419)
+|....+..+||+||+|
T Consensus 707 eia~~~~c~gftGADLa 723 (802)
T KOG0733|consen 707 EIARNTKCEGFTGADLA 723 (802)
T ss_pred HHhhcccccCCchhhHH
Confidence 45444444579999986
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-37 Score=303.99 Aligned_cols=201 Identities=26% Similarity=0.371 Sum_probs=174.1
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC------
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE------ 263 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~------ 263 (419)
+|+++-|.++.|+++ +.+..|++.|+.|.++|-..|+|+||.||||||||.||+|+|++.+.+++....+.++
T Consensus 302 ~F~dVkG~DEAK~EL-eEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGv 380 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQEL-EEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGV 380 (752)
T ss_pred ccccccChHHHHHHH-HHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcc
Confidence 799999999999999 5578999999999999999999999999999999999999999999999999888763
Q ss_pred ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Q 040638 264 GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW 341 (419)
Q Consensus 264 ~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~ 341 (419)
+...+|.+|..+ ..||||||||||++...+...... -.+.|+.+||..|||+.
T Consensus 381 GArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-------------------------y~kqTlNQLLvEmDGF~ 435 (752)
T KOG0734|consen 381 GARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-------------------------YAKQTLNQLLVEMDGFK 435 (752)
T ss_pred cHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-------------------------HHHHHHHHHHHHhcCcC
Confidence 678999999766 569999999999987644432221 13789999999999995
Q ss_pred cCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 342 SSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 342 s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
.. +++|||++||.|+.||+||.||||||+||.+|.|+...|.+|++.|+....+.-.-+..-+..++ ++|+||++
T Consensus 436 qN--eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa 511 (752)
T KOG0734|consen 436 QN--EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA 511 (752)
T ss_pred cC--CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH
Confidence 54 56999999999999999999999999999999999999999999999976554333444566654 79999986
No 6
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-35 Score=294.22 Aligned_cols=208 Identities=22% Similarity=0.298 Sum_probs=174.5
Q ss_pred eccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 184 ILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 184 ~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++++. +|++++|.++...++.+.+.. +++|+.|..+|+.++||+|||||||||||+||+|+|++++.+++.+..+++
T Consensus 181 ~~~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApei 259 (802)
T KOG0733|consen 181 EFPESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEI 259 (802)
T ss_pred CCCCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhh
Confidence 344433 799999999999999887765 999999999999999999999999999999999999999999999998876
Q ss_pred ------CChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHH
Q 040638 263 ------EGNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334 (419)
Q Consensus 263 ------~~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll 334 (419)
++++.++++|.++. .|||+||||||++.+.++.... . -.++.+++||
T Consensus 260 vSGvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqr-----------------e--------MErRiVaQLl 314 (802)
T KOG0733|consen 260 VSGVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQR-----------------E--------MERRIVAQLL 314 (802)
T ss_pred hcccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHH-----------------H--------HHHHHHHHHH
Confidence 46889999998875 5999999999999874443211 1 1367889999
Q ss_pred HHhcCcccC--CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-C
Q 040638 335 NFTNGLWSS--SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-K 411 (419)
Q Consensus 335 ~~ldg~~s~--~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~ 411 (419)
+.||++... .|..++||++||+|+.|||||+|+||||..|.+..|+..+|.+|++..+..-.+...-+.+.+..-+ +
T Consensus 315 t~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPG 394 (802)
T KOG0733|consen 315 TSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPG 394 (802)
T ss_pred HhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCC
Confidence 999999655 4678999999999999999999999999999999999999999999998866555433444444432 4
Q ss_pred CCcccc
Q 040638 412 VTPAEV 417 (419)
Q Consensus 412 ~tpa~v 417 (419)
|-+||+
T Consensus 395 fVGADL 400 (802)
T KOG0733|consen 395 FVGADL 400 (802)
T ss_pred ccchhH
Confidence 777775
No 7
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-34 Score=296.04 Aligned_cols=204 Identities=23% Similarity=0.327 Sum_probs=166.9
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc------C
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV------E 263 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~------~ 263 (419)
+|+|++|.+++|.+|++.+..++++++.|.. |...+.|+|||||||||||.||+|+|-++...+..+...++ +
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfss-glrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGq 748 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSS-GLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQ 748 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhc-cccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcc
Confidence 8999999999999999999999999999976 77778899999999999999999999999999999888776 5
Q ss_pred ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Q 040638 264 GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW 341 (419)
Q Consensus 264 ~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~ 341 (419)
+++++|++|.++. +|||||+||+|.+.+.+++.+...+ ...+..|+||.+|||+.
T Consensus 749 SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGG-----------------------VMDRVVSQLLAELDgls 805 (953)
T KOG0736|consen 749 SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGG-----------------------VMDRVVSQLLAELDGLS 805 (953)
T ss_pred hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccc-----------------------cHHHHHHHHHHHhhccc
Confidence 7899999998874 6999999999999996666543221 13578899999999997
Q ss_pred cCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCH-HHHHHHHHHhhCCCCCCChHHHHHHHhcC--CCCcccc
Q 040638 342 SSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTL-CGFKILASNYLGITEHPLFSEVEELIEQT--KVTPAEV 417 (419)
Q Consensus 342 s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~-~~~~~l~~~~l~~~~~~l~~~i~~l~~~~--~~tpa~v 417 (419)
..+...+.||++||+||-|||||+||||||+-++++.|.. +....+++..-..-...-.-++.++.+.. ++|+||+
T Consensus 806 ~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADl 884 (953)
T KOG0736|consen 806 DSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADL 884 (953)
T ss_pred CCCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHH
Confidence 6566779999999999999999999999999999999855 55556666544432211112233344432 5999885
No 8
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-34 Score=261.49 Aligned_cols=209 Identities=28% Similarity=0.407 Sum_probs=170.5
Q ss_pred cCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc--
Q 040638 186 DHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV-- 262 (419)
Q Consensus 186 ~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~-- 262 (419)
+.|. ++.+++|.+=+|++|.+.++.++.+.+.|+.+|+.+|||+|||||||||||+|++|+|+.....++.+..+.+
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 3454 8999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred ----CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 263 ----EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 263 ----~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
++..-+|.+|.-+ ..|+||||||||++.. .|-+...+.. .+-+..+.+|||.
T Consensus 228 kylgegprmvrdvfrlakenapsiifideidaiat--krfdaqtgad--------------------revqril~ellnq 285 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIAT--KRFDAQTGAD--------------------REVQRILIELLNQ 285 (408)
T ss_pred HHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhh--hhcccccccc--------------------HHHHHHHHHHHHh
Confidence 3566788888654 5799999999999876 3333222111 2347788899999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCcc
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPA 415 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa 415 (419)
|||+-.. -++-+|++||+.+.|||||+||||+|++|+||+|+..+++-++..........-.-+++.++.. ..+|.|
T Consensus 286 mdgfdq~--~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~a 363 (408)
T KOG0727|consen 286 MDGFDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGA 363 (408)
T ss_pred ccCcCcc--cceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchh
Confidence 9999654 4688999999999999999999999999999999999999888877665433333345555443 347777
Q ss_pred ccc
Q 040638 416 EVA 418 (419)
Q Consensus 416 ~v~ 418 (419)
||+
T Consensus 364 di~ 366 (408)
T KOG0727|consen 364 DIN 366 (408)
T ss_pred hHH
Confidence 663
No 9
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-34 Score=297.54 Aligned_cols=207 Identities=27% Similarity=0.375 Sum_probs=174.3
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
+.+|.+++|.++.|++|.+ +..|+++|+.|.++|...|+|+||+||||||||.||+|+|++.+.+++.++.++.
T Consensus 307 ~V~FkDVAG~deAK~El~E-~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~ 385 (774)
T KOG0731|consen 307 GVKFKDVAGVDEAKEELME-FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFV 385 (774)
T ss_pred CCccccccCcHHHHHHHHH-HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhc
Confidence 4689999999999999977 6689999999999999999999999999999999999999999999999998876
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
...+.++.+|..+ ..||||+|||||++...+. +... .+++ .++..|+.+||..|||
T Consensus 386 g~~asrvr~lf~~ar~~aP~iifideida~~~~r~--G~~~----~~~~---------------~e~e~tlnQll~emDg 444 (774)
T KOG0731|consen 386 GVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRG--GKGT----GGGQ---------------DEREQTLNQLLVEMDG 444 (774)
T ss_pred ccchHHHHHHHHHhhccCCeEEEeccccccccccc--cccc----CCCC---------------hHHHHHHHHHHHHhcC
Confidence 2578899999776 4699999999999876443 1000 0011 2357899999999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCC-ChHHHHHHHh-cCCCCcccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHP-LFSEVEELIE-QTKVTPAEV 417 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~-l~~~i~~l~~-~~~~tpa~v 417 (419)
+.+. .++|++++||+++.||+||+||||||++|.++.|+...|..|++.|+...... -..++..+.. ..++|+|||
T Consensus 445 f~~~--~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl 522 (774)
T KOG0731|consen 445 FETS--KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADL 522 (774)
T ss_pred CcCC--CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHH
Confidence 9765 56999999999999999999999999999999999999999999999875443 2234444444 346999998
Q ss_pred c
Q 040638 418 A 418 (419)
Q Consensus 418 ~ 418 (419)
+
T Consensus 523 ~ 523 (774)
T KOG0731|consen 523 A 523 (774)
T ss_pred H
Confidence 6
No 10
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-34 Score=266.27 Aligned_cols=206 Identities=25% Similarity=0.332 Sum_probs=170.7
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV------ 262 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~------ 262 (419)
.+|.+++|.+.+.++|.+.++.++.+|++|..+|+.+|+|++|||+||||||.||+|+||.....+..+-.+.+
T Consensus 182 Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylG 261 (440)
T KOG0726|consen 182 ETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLG 261 (440)
T ss_pred hhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhc
Confidence 39999999999999999999999999999999999999999999999999999999999999998888777665
Q ss_pred CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 263 EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 263 ~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
.+..-+|++|.-+ ..|||+||||||++... |-+... ++. .+-+.|+.+|||.+||+
T Consensus 262 dGpklvRqlF~vA~e~apSIvFiDEIdAiGtK--Ryds~S-----gge---------------rEiQrtmLELLNQldGF 319 (440)
T KOG0726|consen 262 DGPKLVRELFRVAEEHAPSIVFIDEIDAIGTK--RYDSNS-----GGE---------------REIQRTMLELLNQLDGF 319 (440)
T ss_pred cchHHHHHHHHHHHhcCCceEEeehhhhhccc--cccCCC-----ccH---------------HHHHHHHHHHHHhccCc
Confidence 3556678888654 67999999999998762 222111 010 23478899999999999
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh-cCCCCccccc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE-QTKVTPAEVA 418 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~tpa~v~ 418 (419)
-+ .+.+-+|++||+.+.|||||+||||+|++|+|+.|+...++.|+.-+-..-...-.-.++.++. +..+|+|||.
T Consensus 320 ds--rgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIk 396 (440)
T KOG0726|consen 320 DS--RGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIK 396 (440)
T ss_pred cc--cCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHH
Confidence 65 4679999999999999999999999999999999999999999987766543332334566654 4468988873
No 11
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-33 Score=253.22 Aligned_cols=207 Identities=26% Similarity=0.336 Sum_probs=168.8
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
.++++-++|.+.+.++|.+-++.+.++|+.|..+|++-|+|+|||||||||||.|++|+|.+....++.++.+.+
T Consensus 143 DStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~i 222 (404)
T KOG0728|consen 143 DSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYI 222 (404)
T ss_pred ccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHh
Confidence 458899999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
++..-+|++|.-+ ..|||||.||||++...+.....+ + + .+-+.|+.+|||.+||
T Consensus 223 gegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~g-------g--d-------------sevqrtmlellnqldg 280 (404)
T KOG0728|consen 223 GEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSG-------G--D-------------SEVQRTMLELLNQLDG 280 (404)
T ss_pred hhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCC-------c--c-------------HHHHHHHHHHHHhccc
Confidence 3455677777544 679999999999987632221111 1 1 2357899999999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~v~ 418 (419)
+... .++-+|++||+.+.|||||+||||+|+.|+||.|+.++|.+|++-+-..-..----.++.+.++ .+.|+|||.
T Consensus 281 feat--knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk 358 (404)
T KOG0728|consen 281 FEAT--KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK 358 (404)
T ss_pred cccc--cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh
Confidence 9665 5588999999999999999999999999999999999999999988765432211233344443 347777763
No 12
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=5.9e-32 Score=271.50 Aligned_cols=207 Identities=26% Similarity=0.370 Sum_probs=167.9
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
..+|++++|.+.+|++|.+.+..++.+++.|.++|+.+++|+|||||||||||++++++|+.++.+++.+..+.+
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ 220 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYL 220 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhc
Confidence 349999999999999999999999999999999999999999999999999999999999999999998876554
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
.+...++.+|..+ .+|+||||||||+++..+..... +. + ......+.+|++.+|+
T Consensus 221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~--~~-------d-------------~~~~r~l~~LL~~ld~ 278 (398)
T PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT--GA-------D-------------REVQRILLELLNQMDG 278 (398)
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccC--Cc-------c-------------HHHHHHHHHHHHHhhc
Confidence 1345677777554 57999999999998753211110 00 0 1235678889999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
+... .++++|+|||+++.||||++||||||.+|++++|+.++|..|++.++........-++..+...+ ++|||||.
T Consensus 279 ~~~~--~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~ 356 (398)
T PTZ00454 279 FDQT--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIA 356 (398)
T ss_pred cCCC--CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 8654 45889999999999999999999999999999999999999999998765433223445555443 59999974
No 13
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=5.7e-32 Score=247.49 Aligned_cols=203 Identities=21% Similarity=0.305 Sum_probs=165.2
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV------ 262 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~------ 262 (419)
.++++++|.+.+.+++++.+..++.+++.|.++|+.+|+|+|+|||||||||.|++|.|...+..+..+....+
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIG 247 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIG 247 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999999888776655443
Q ss_pred CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 263 EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 263 ~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
.+..-+|..|.-+ ..|+||||||+|++... |.+.... | + .+-+.|+.+|||.+||+
T Consensus 248 dGAkLVRDAFaLAKEkaP~IIFIDElDAIGtK--RfDSek~-----G------D---------REVQRTMLELLNQLDGF 305 (424)
T KOG0652|consen 248 DGAKLVRDAFALAKEKAPTIIFIDELDAIGTK--RFDSEKA-----G------D---------REVQRTMLELLNQLDGF 305 (424)
T ss_pred chHHHHHHHHHHhhccCCeEEEEechhhhccc--ccccccc-----c------c---------HHHHHHHHHHHHhhcCC
Confidence 2445567777554 57999999999998763 2221110 0 0 23478999999999999
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC---CCCChHHHHHHHhcCCCCcccc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT---EHPLFSEVEELIEQTKVTPAEV 417 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~---~~~l~~~i~~l~~~~~~tpa~v 417 (419)
.+ ..++-+|++||+.+.|||||+|.||+|++|+||.|+.++|..|++-+-... +.--|+++....++ +.+|+.
T Consensus 306 ss--~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTdd--FNGAQc 381 (424)
T KOG0652|consen 306 SS--DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDD--FNGAQC 381 (424)
T ss_pred CC--ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccc--cCchhh
Confidence 55 467889999999999999999999999999999999999999999887654 33346666655444 666553
No 14
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-31 Score=275.60 Aligned_cols=206 Identities=26% Similarity=0.348 Sum_probs=172.7
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
..+|.+++|.++.|+++.+ +..|++.|..|..+|...|+|+||+||||||||+|++|+|++.+.+++.++.++.
T Consensus 146 ~v~F~DVAG~dEakeel~E-iVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfV 224 (596)
T COG0465 146 KVTFADVAGVDEAKEELSE-LVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFV 224 (596)
T ss_pred CcChhhhcCcHHHHHHHHH-HHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhc
Confidence 3499999999999999966 6689999999999999999999999999999999999999999999999999886
Q ss_pred -CChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
.+.+.+|.+|.++. .||||||||||+....+... .++++ .+...|+.+||.+|||
T Consensus 225 GvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g-------~Gggn---------------derEQTLNQlLvEmDG 282 (596)
T COG0465 225 GVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAG-------LGGGN---------------DEREQTLNQLLVEMDG 282 (596)
T ss_pred CCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCC-------CCCCc---------------hHHHHHHHHHHhhhcc
Confidence 37889999998875 59999999999886533222 11111 2356899999999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
+.+ +..++++++||+|+.|||||+||||||++|.++.|+...|.+|++-|+......-.-++..+...+ ++|.||++
T Consensus 283 F~~--~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~ 360 (596)
T COG0465 283 FGG--NEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA 360 (596)
T ss_pred CCC--CCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh
Confidence 964 356999999999999999999999999999999999999999999888876544333344444443 58888875
No 15
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=4.6e-31 Score=268.46 Aligned_cols=214 Identities=19% Similarity=0.233 Sum_probs=180.3
Q ss_pred CCCceeeeccCCC--CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 177 HDTWQSAILDHPS--TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 177 ~~~w~~~~~~~p~--~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
+...+.+.+..+. .|++++|..++|+.+.+-+.++.+.+..|...+++.+.|+|||||||||||.|+.|+|...+..+
T Consensus 650 P~aLR~ik~~k~tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~f 729 (952)
T KOG0735|consen 650 PLALRGIKLVKSTGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRF 729 (952)
T ss_pred hHHhhhccccccCCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeE
Confidence 3456677776665 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccc------CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 255 YDLELSSV------EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 255 ~~l~l~~~------~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
+.+...++ .++..+|.+|.++ .+|||+|+||+|.+.+.++....+. -
T Consensus 730 isvKGPElL~KyIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGV-------------------------T 784 (952)
T KOG0735|consen 730 ISVKGPELLSKYIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGV-------------------------T 784 (952)
T ss_pred EEecCHHHHHHHhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCc-------------------------h
Confidence 99988776 4688999999876 4699999999999988443322111 1
Q ss_pred HHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHH
Q 040638 327 ILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEEL 406 (419)
Q Consensus 327 ~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l 406 (419)
.+...+||..|||...- .++.|+++|.+|+.|||||+||||+|++++.+.|+..+|.+|++..-.....+..-+++-+
T Consensus 785 DRVVNQlLTelDG~Egl--~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~ 862 (952)
T KOG0735|consen 785 DRVVNQLLTELDGAEGL--DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECL 862 (952)
T ss_pred HHHHHHHHHhhcccccc--ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHH
Confidence 46788999999999654 4599999999999999999999999999999999999999999987665444444455555
Q ss_pred Hhc-CCCCcccc
Q 040638 407 IEQ-TKVTPAEV 417 (419)
Q Consensus 407 ~~~-~~~tpa~v 417 (419)
... .++|+||+
T Consensus 863 a~~T~g~tgADl 874 (952)
T KOG0735|consen 863 AQKTDGFTGADL 874 (952)
T ss_pred hhhcCCCchhhH
Confidence 554 35999987
No 16
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=4e-31 Score=270.65 Aligned_cols=181 Identities=25% Similarity=0.374 Sum_probs=148.3
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE--------E--EE
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV--------Y--DL 257 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v--------~--~l 257 (419)
+.+|++++|.++.+++|.+.+..++.+++.|++.|+++++|+|||||||||||++++++|++++.++ + .+
T Consensus 178 ~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v 257 (512)
T TIGR03689 178 DVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNI 257 (512)
T ss_pred CCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEec
Confidence 4599999999999999999999999999999999999999999999999999999999999997652 2 22
Q ss_pred Eeccc------CChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 258 ELSSV------EGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 258 ~l~~~------~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
..+.+ ..+..++.+|..+. .|+||||||+|+++..++.... . ..
T Consensus 258 ~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s---~---------------------d~ 313 (512)
T TIGR03689 258 KGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVS---S---------------------DV 313 (512)
T ss_pred cchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCcc---c---------------------hH
Confidence 22222 13445677775542 5899999999998763221100 0 01
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
....+.+||+.||++.+. +++++|+|||+++.|||||+||||||.+|+|++|+.+++++|+++|+..
T Consensus 314 e~~il~~LL~~LDgl~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 314 ETTVVPQLLSELDGVESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred HHHHHHHHHHHhcccccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 245678999999999654 4689999999999999999999999999999999999999999999975
No 17
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=256.20 Aligned_cols=207 Identities=20% Similarity=0.306 Sum_probs=166.4
Q ss_pred eeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 183 AILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 183 ~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
+.-.+|. .|++++|..+.|+-|.+.+..++.-|++|+.+-.||+ |+|++||||||||+||+|+|.+++..++.++-+.
T Consensus 202 Il~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWk-gvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsst 280 (491)
T KOG0738|consen 202 ILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWK-GVLMVGPPGTGKTLLAKAVATECGTTFFNVSSST 280 (491)
T ss_pred HhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccc-eeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhh
Confidence 4445666 9999999999999999999999999999999988886 8999999999999999999999999999998887
Q ss_pred cC------ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 262 VE------GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 262 ~~------~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+. ++.-+|-+|.-+ ..|++|||||||.+...++.... + -.+...-++|
T Consensus 281 ltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~E-H-----------------------EaSRRvKsEL 336 (491)
T KOG0738|consen 281 LTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSE-H-----------------------EASRRVKSEL 336 (491)
T ss_pred hhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccc-h-----------------------hHHHHHHHHH
Confidence 72 344445555433 57999999999999874333211 1 1247788999
Q ss_pred HHHhcCcccCCCC-C-EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCC---CChHHHHHHHh
Q 040638 334 LNFTNGLWSSSGD-E-RIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEH---PLFSEVEELIE 408 (419)
Q Consensus 334 l~~ldg~~s~~g~-~-~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~---~l~~~i~~l~~ 408 (419)
|..|||+.....+ . ++|+++||.||+||.||+| ||.+.|++|.|+.++|+.|++..|..... -..+.|.+..+
T Consensus 337 LvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~e 414 (491)
T KOG0738|consen 337 LVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSE 414 (491)
T ss_pred HHHhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhc
Confidence 9999999665222 2 5566799999999999999 99999999999999999999999986422 22345555444
Q ss_pred cCCCCccccc
Q 040638 409 QTKVTPAEVA 418 (419)
Q Consensus 409 ~~~~tpa~v~ 418 (419)
+ ||++||.
T Consensus 415 G--ySGaDI~ 422 (491)
T KOG0738|consen 415 G--YSGADIT 422 (491)
T ss_pred C--CChHHHH
Confidence 4 9999874
No 18
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.5e-31 Score=243.96 Aligned_cols=206 Identities=24% Similarity=0.325 Sum_probs=169.5
Q ss_pred cCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc--
Q 040638 186 DHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV-- 262 (419)
Q Consensus 186 ~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~-- 262 (419)
+.|. |+++++|-.++.+.+.+-++.++-+++.|-++|+.+|+|+|||||||||||.+++|+||..+..++.+-.+.+
T Consensus 170 ekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselvq 249 (435)
T KOG0729|consen 170 EKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ 249 (435)
T ss_pred cCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH
Confidence 4555 9999999999999999999999999999999999999999999999999999999999999999998877765
Q ss_pred ----CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 263 ----EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 263 ----~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
++..-+|++|.-+ ...||||+||||++.+. |-+.+.+ .+ .+-+.|+.+|+|.
T Consensus 250 kyvgegarmvrelf~martkkaciiffdeidaigga--rfddg~g-------gd-------------nevqrtmleli~q 307 (435)
T KOG0729|consen 250 KYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGA--RFDDGAG-------GD-------------NEVQRTMLELINQ 307 (435)
T ss_pred HHhhhhHHHHHHHHHHhcccceEEEEeeccccccCc--cccCCCC-------Cc-------------HHHHHHHHHHHHh
Confidence 2455677888654 45799999999998763 2221110 11 2347899999999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC---CCChHHHHHHHhcCCCC
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITE---HPLFSEVEELIEQTKVT 413 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~---~~l~~~i~~l~~~~~~t 413 (419)
+||+-. .+++-++++||+|+.|||||+||||+|++++|+.|+.+.|..|++-+-.... .--++-+..|+.+ -|
T Consensus 308 ldgfdp--rgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpn--st 383 (435)
T KOG0729|consen 308 LDGFDP--RGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPN--ST 383 (435)
T ss_pred ccCCCC--CCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCC--Cc
Confidence 999953 4678899999999999999999999999999999999999999988776532 2235666666665 66
Q ss_pred cccc
Q 040638 414 PAEV 417 (419)
Q Consensus 414 pa~v 417 (419)
.|||
T Consensus 384 gaei 387 (435)
T KOG0729|consen 384 GAEI 387 (435)
T ss_pred chHH
Confidence 6665
No 19
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=4e-30 Score=258.98 Aligned_cols=209 Identities=25% Similarity=0.334 Sum_probs=167.7
Q ss_pred cCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-
Q 040638 186 DHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE- 263 (419)
Q Consensus 186 ~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~- 263 (419)
+.|. +|++++|.++++++|.+.+..++.+++.|+.+|+.+++|+|||||||||||++++++|+.++.+++.+.++.+.
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 3444 89999999999999999999999999999999999999999999999999999999999999999999887652
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 -----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 -----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
....++.+|..+ ..|+||||||||.++..+.... ... + ...+.++..+++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~--~~~-------~-------------~~~~~~l~~lL~~ 261 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSG--TSG-------D-------------REVQRTLMQLLAE 261 (389)
T ss_pred hhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCC--CCc-------c-------------HHHHHHHHHHHHh
Confidence 345667777654 4689999999999876322111 000 0 1225567789999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCcc
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPA 415 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa 415 (419)
+|++.. .+.+.||+|||+++.||+|++||||||..|+++.|+.++|.+|++.++.........++..+... .++|+|
T Consensus 262 ld~~~~--~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sga 339 (389)
T PRK03992 262 MDGFDP--RGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGA 339 (389)
T ss_pred ccccCC--CCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHH
Confidence 998754 34688999999999999999999999999999999999999999999876443222234444443 359999
Q ss_pred ccc
Q 040638 416 EVA 418 (419)
Q Consensus 416 ~v~ 418 (419)
||.
T Consensus 340 dl~ 342 (389)
T PRK03992 340 DLK 342 (389)
T ss_pred HHH
Confidence 874
No 20
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.97 E-value=4.5e-30 Score=278.29 Aligned_cols=208 Identities=25% Similarity=0.326 Sum_probs=172.1
Q ss_pred ccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-
Q 040638 185 LDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV- 262 (419)
Q Consensus 185 ~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~- 262 (419)
.+.|. +|++++|.+++|+.+.+.+..++.+++.|.++|+.+++|+|||||||||||++++++|++++.+++.+..+.+
T Consensus 445 ~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~ 524 (733)
T TIGR01243 445 VEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL 524 (733)
T ss_pred ccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHh
Confidence 34444 8999999999999999999999999999999999999999999999999999999999999999999987664
Q ss_pred -----CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 263 -----EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 263 -----~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
.++..++.+|..+ ..||||||||||.+...++.... . ......+++||.
T Consensus 525 ~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~--~----------------------~~~~~~~~~lL~ 580 (733)
T TIGR01243 525 SKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFD--T----------------------SVTDRIVNQLLT 580 (733)
T ss_pred hcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCC--c----------------------cHHHHHHHHHHH
Confidence 2456789999765 46899999999999863321110 0 012467788999
Q ss_pred HhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCc
Q 040638 336 FTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTP 414 (419)
Q Consensus 336 ~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tp 414 (419)
.|||+... ..++||+|||+|+.||||++||||||.+|++|+|+.++|.+|++.++......-..+++.+.+.+ ++|+
T Consensus 581 ~ldg~~~~--~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sg 658 (733)
T TIGR01243 581 EMDGIQEL--SNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTG 658 (733)
T ss_pred HhhcccCC--CCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCH
Confidence 99998543 46899999999999999999999999999999999999999999998765443333455555543 5999
Q ss_pred cccc
Q 040638 415 AEVA 418 (419)
Q Consensus 415 a~v~ 418 (419)
|||.
T Consensus 659 adi~ 662 (733)
T TIGR01243 659 ADIE 662 (733)
T ss_pred HHHH
Confidence 9874
No 21
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=260.70 Aligned_cols=208 Identities=23% Similarity=0.313 Sum_probs=166.8
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
++.+|++++|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++++++|+.++.+++.+..+.+.
T Consensus 178 p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~ 257 (438)
T PTZ00361 178 PLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKY 257 (438)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhh
Confidence 34599999999999999999999999999999999999999999999999999999999999999999988776652
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
+...++.+|..+ ..|+||+|||||.++..+.....+ +. .....++..|++.+|
T Consensus 258 ~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sg-------g~---------------~e~qr~ll~LL~~Ld 315 (438)
T PTZ00361 258 LGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSG-------GE---------------KEIQRTMLELLNQLD 315 (438)
T ss_pred cchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCc-------cc---------------HHHHHHHHHHHHHHh
Confidence 334467777544 468999999999887522211110 00 112456778999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCcccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPAEV 417 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~v 417 (419)
++... ..+.||+|||+++.||||++||||||.+|+|+.|+.++|.+|++.++......-.-+++.++.. .++|+|||
T Consensus 316 g~~~~--~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI 393 (438)
T PTZ00361 316 GFDSR--GDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADI 393 (438)
T ss_pred hhccc--CCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHH
Confidence 98543 4588999999999999999999999999999999999999999999876543222244555543 35999987
Q ss_pred c
Q 040638 418 A 418 (419)
Q Consensus 418 ~ 418 (419)
.
T Consensus 394 ~ 394 (438)
T PTZ00361 394 K 394 (438)
T ss_pred H
Confidence 4
No 22
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=6.1e-30 Score=265.82 Aligned_cols=207 Identities=25% Similarity=0.360 Sum_probs=167.2
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc----
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV---- 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~---- 262 (419)
+..+|++++|.+++|+++.+.+ .++.+++.|.+.|..+++|+|||||||||||++++++|++++.+++.++.+.+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~-~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~ 128 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIV-DFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 128 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-HHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH
Confidence 3459999999999999998654 56899999999999999999999999999999999999999999999887654
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 263 --EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 263 --~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
.+...++.+|..+ ..||||||||||.+...++...... . .....++++||+.||
T Consensus 129 ~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~-------~---------------~~~~~~~~~lL~~~d 186 (495)
T TIGR01241 129 VGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGG-------N---------------DEREQTLNQLLVEMD 186 (495)
T ss_pred hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCc-------c---------------HHHHHHHHHHHhhhc
Confidence 2456788888765 4689999999999875332210000 0 112467788999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCcccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEV 417 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v 417 (419)
++.+. +.++||+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++.........++..+.+.+ ++|+|||
T Consensus 187 ~~~~~--~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl 264 (495)
T TIGR01241 187 GFGTN--TGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADL 264 (495)
T ss_pred cccCC--CCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHH
Confidence 98553 45899999999999999999999999999999999999999999999865443333455555543 5999987
Q ss_pred c
Q 040638 418 A 418 (419)
Q Consensus 418 ~ 418 (419)
.
T Consensus 265 ~ 265 (495)
T TIGR01241 265 A 265 (495)
T ss_pred H
Confidence 4
No 23
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4e-30 Score=239.25 Aligned_cols=207 Identities=22% Similarity=0.314 Sum_probs=172.0
Q ss_pred eeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 183 AILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 183 ~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
+..+.|. .|++++|.+..|+.+.+.+..+++.|.+|..--++| ||+|||||||||||.|++|+|-+.+-.++.++-++
T Consensus 123 Iv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~Pw-rgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSD 201 (439)
T KOG0739|consen 123 IVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPW-RGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 201 (439)
T ss_pred hhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcc-eeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHH
Confidence 3455666 899999999999999999999999999998766666 59999999999999999999999999999998877
Q ss_pred c------CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 262 V------EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 262 ~------~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+ +++.-++.+|.-+ ..||||||||||.+.+.++... . ....+.-.+|
T Consensus 202 LvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enE--s-----------------------easRRIKTEf 256 (439)
T KOG0739|consen 202 LVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENE--S-----------------------EASRRIKTEF 256 (439)
T ss_pred HHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCc--h-----------------------HHHHHHHHHH
Confidence 6 3455667777544 5799999999998876322111 1 1135566779
Q ss_pred HHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChH-HHHHHHhcC-C
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFS-EVEELIEQT-K 411 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~~-~ 411 (419)
|..|.|.-.. ..+++++++||-|+.||.|++| ||+..|++|.|...+|..+++.+|+...|.|.+ +++.|...+ +
T Consensus 257 LVQMqGVG~d-~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeG 333 (439)
T KOG0739|consen 257 LVQMQGVGND-NDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEG 333 (439)
T ss_pred HHhhhccccC-CCceEEEecCCCchhHHHHHHH--HhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCC
Confidence 9999998544 4568888999999999999999 999999999999999999999999998888854 677777765 5
Q ss_pred CCccccc
Q 040638 412 VTPAEVA 418 (419)
Q Consensus 412 ~tpa~v~ 418 (419)
+|++||+
T Consensus 334 ySGsDis 340 (439)
T KOG0739|consen 334 YSGSDIS 340 (439)
T ss_pred CCcCceE
Confidence 9999986
No 24
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.96 E-value=1.7e-29 Score=258.95 Aligned_cols=200 Identities=20% Similarity=0.238 Sum_probs=157.2
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
+.+|++++|.+.+|+.+.+....|. ....+.|++.++|+|||||||||||++|+|+|++++.+++.++++.+
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~---~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFS---KQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhh---HHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 3489999999999999887665543 33466799999999999999999999999999999999999988664
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
.++..++++|..+ .+||||+|||||.++...+.... . ......+..|+..|+.
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d----~--------------------~~~~rvl~~lL~~l~~ 356 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGD----S--------------------GTTNRVLATFITWLSE 356 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCC----c--------------------hHHHHHHHHHHHHHhc
Confidence 2456788888644 57999999999987652111100 0 1124567778888875
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCC--hHHHHHHHhcC-CCCccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPL--FSEVEELIEQT-KVTPAE 416 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l--~~~i~~l~~~~-~~tpa~ 416 (419)
. ...+++|+|||+++.||||++||||||..|+++.|+.++|++|++.|+....... ..+++.+.+.+ ++|+||
T Consensus 357 ~----~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAd 432 (489)
T CHL00195 357 K----KSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAE 432 (489)
T ss_pred C----CCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHH
Confidence 3 3458899999999999999999999999999999999999999999998743221 23456666543 699999
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 433 I~ 434 (489)
T CHL00195 433 IE 434 (489)
T ss_pred HH
Confidence 74
No 25
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.4e-29 Score=258.53 Aligned_cols=211 Identities=27% Similarity=0.387 Sum_probs=176.5
Q ss_pred eeeeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 181 QSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 181 ~~~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
..+.+..|. +|++++|+.+.|+.+.+.+..++.+++.|.+.|+..++|+|||||||||||+|++|+|++++.+++.+..
T Consensus 230 ~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~ 309 (494)
T COG0464 230 RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKG 309 (494)
T ss_pred cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeC
Confidence 345555555 9999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccc------CChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 260 SSV------EGNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 260 ~~~------~~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
+++ .++..++.+|..+. +||||||||+|.++..++.... ......+.
T Consensus 310 ~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~-------------------------~~~~r~~~ 364 (494)
T COG0464 310 SELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSED-------------------------GSGRRVVG 364 (494)
T ss_pred HHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCc-------------------------hHHHHHHH
Confidence 866 35788999997774 7999999999999873332111 01146788
Q ss_pred hHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChH--HHHHHHh-
Q 040638 332 GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFS--EVEELIE- 408 (419)
Q Consensus 332 ~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~--~i~~l~~- 408 (419)
+|+..|||+-.. .++++|+|||+|+.||||++||||||..|+++.|+.++|..+++.++....+.+.+ ..+.+.+
T Consensus 365 ~lL~~~d~~e~~--~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~ 442 (494)
T COG0464 365 QLLTELDGIEKA--EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEI 442 (494)
T ss_pred HHHHHhcCCCcc--CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHH
Confidence 999999999654 45889999999999999999999999999999999999999999999976554332 3344444
Q ss_pred cCCCCccccc
Q 040638 409 QTKVTPAEVA 418 (419)
Q Consensus 409 ~~~~tpa~v~ 418 (419)
..++|+|||.
T Consensus 443 t~~~sgadi~ 452 (494)
T COG0464 443 TEGYSGADIA 452 (494)
T ss_pred hcCCCHHHHH
Confidence 2349999875
No 26
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=2.5e-28 Score=236.55 Aligned_cols=196 Identities=17% Similarity=0.165 Sum_probs=149.2
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc----
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV---- 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~---- 262 (419)
...+|+.+.|.=.+-...++.+..+. .+.+....|+.+|+|++||||||||||.+++|+|++++.+++.++..++
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi-~kn~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHI-AKNFLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHH-HhhhhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34577777554444444444443332 3345556789999999999999999999999999999999999998877
Q ss_pred --CChHHHHHHHHHcc-------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 263 --EGNKHLRKVLIATE-------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 263 --~~~~~l~~l~~~~~-------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+++..+|++|..+. +||||||||||.+++.++... . . ...++....|
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~--~--t--------------------v~~qiV~~tL 244 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQ--Y--T--------------------VNNQMVNGTL 244 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCC--c--c--------------------hHHHHHHHHH
Confidence 35688999997653 599999999999887432110 0 0 1235566789
Q ss_pred HHHhcCc--------c-c-CCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH
Q 040638 334 LNFTNGL--------W-S-SSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV 403 (419)
Q Consensus 334 l~~ldg~--------~-s-~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i 403 (419)
++.+|+. | . .....+.||+|||+|+.|||||+||||||..+ ..|+.++|.+|++.++...+.+ ..++
T Consensus 245 Lnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv 321 (413)
T PLN00020 245 MNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDV 321 (413)
T ss_pred HHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHH
Confidence 9998863 4 1 23456889999999999999999999999975 5899999999999999886544 5788
Q ss_pred HHHHhcC
Q 040638 404 EELIEQT 410 (419)
Q Consensus 404 ~~l~~~~ 410 (419)
+.+.+..
T Consensus 322 ~~Lv~~f 328 (413)
T PLN00020 322 VKLVDTF 328 (413)
T ss_pred HHHHHcC
Confidence 8888764
No 27
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=9.8e-29 Score=260.65 Aligned_cols=207 Identities=26% Similarity=0.338 Sum_probs=166.9
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
...+|++++|.++.|+++.+ +..+++.++.|..+|..+++|+||+||||||||++++++|++++.+++.++++.+.
T Consensus 178 ~~~~f~dv~G~~~~k~~l~e-iv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 178 TGITFRDIAGIEEAKEEFEE-VVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCHHhccChHHHHHHHHH-HHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 34599999999999998855 56778999999999999999999999999999999999999999999999877652
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....++.+|..+ ..||||||||||++...++....+. + .....++..||..+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~-------~---------------~e~~~~L~~LL~~~d 314 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGG-------N---------------DEREQTLNQLLTEMD 314 (638)
T ss_pred hhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCC-------c---------------HHHHHHHHHHHhhhc
Confidence 345678888765 4689999999999875322111000 0 123567888999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCcccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEV 417 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v 417 (419)
++... .++++|+|||+++.|||||+||||||.+|+++.|+.++|.+|++.++..........+..+.+.+ ++|+|||
T Consensus 315 g~~~~--~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL 392 (638)
T CHL00176 315 GFKGN--KGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADL 392 (638)
T ss_pred cccCC--CCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHH
Confidence 98653 45899999999999999999999999999999999999999999999874433334455565544 5899887
Q ss_pred c
Q 040638 418 A 418 (419)
Q Consensus 418 ~ 418 (419)
+
T Consensus 393 ~ 393 (638)
T CHL00176 393 A 393 (638)
T ss_pred H
Confidence 4
No 28
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.9e-29 Score=233.34 Aligned_cols=199 Identities=23% Similarity=0.306 Sum_probs=164.6
Q ss_pred CCC--CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-
Q 040638 187 HPS--TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE- 263 (419)
Q Consensus 187 ~p~--~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~- 263 (419)
.|. +|+.+.|.-++..++++.+..++.+++.|.++|+.+|.|++||||||||||.+++++|..++.++..+..+.+.
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD 204 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh
Confidence 355 89999999999999999999999999999999999999999999999999999999999999999988887773
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 -----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 -----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
....+|+.|..+ ..||||++||||+..+.+ ..+.. ..+ ..-+.|+..|+|.
T Consensus 205 kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr--~se~T-----------s~d---------reiqrTLMeLlnq 262 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRR--FSEGT-----------SSD---------REIQRTLMELLNQ 262 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEE--ecccc-----------chh---------HHHHHHHHHHHHh
Confidence 345577788666 469999999999987633 11111 111 2347899999999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC-C--CChHHHHHHHhc
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITE-H--PLFSEVEELIEQ 409 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~-~--~l~~~i~~l~~~ 409 (419)
|||+-.- +.+-+|+|||+|+.|||||+||||||+.+++|.|+...|..+++-+-..-+ | --++.|.++.++
T Consensus 263 mdgfd~l--~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~ 336 (388)
T KOG0651|consen 263 MDGFDTL--HRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDG 336 (388)
T ss_pred hccchhc--ccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhc
Confidence 9999543 568899999999999999999999999999999999999998877665421 2 125566666665
No 29
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.95 E-value=2.2e-28 Score=223.91 Aligned_cols=200 Identities=18% Similarity=0.264 Sum_probs=163.7
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
..+|++++|+++.|+.- .-+..++.+|+.|.+ .-|+.+|+|||||||||++++|+||+.+.+++.+..+.+
T Consensus 117 ~it~ddViGqEeAK~kc-rli~~yLenPe~Fg~---WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehV 192 (368)
T COG1223 117 DITLDDVIGQEEAKRKC-RLIMEYLENPERFGD---WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHV 192 (368)
T ss_pred cccHhhhhchHHHHHHH-HHHHHHhhChHHhcc---cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHh
Confidence 34899999999998865 457788889987755 457889999999999999999999999999999988776
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
++...+++++..+ ..|||+||||+|++.- +|..+.-. .+-....+.||..|||
T Consensus 193 Gdgar~Ihely~rA~~~aPcivFiDE~DAiaL--dRryQelR----------------------GDVsEiVNALLTelDg 248 (368)
T COG1223 193 GDGARRIHELYERARKAAPCIVFIDELDAIAL--DRRYQELR----------------------GDVSEIVNALLTELDG 248 (368)
T ss_pred hhHHHHHHHHHHHHHhcCCeEEEehhhhhhhh--hhhHHHhc----------------------ccHHHHHHHHHHhccC
Confidence 2456788888766 4699999999998854 33322110 1124567889999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
+-+ +.+++.|++||+|+.||||+.. ||...|+|..|+.++|.+|++.|+..-..++...++.+.+.+ ++|..||.
T Consensus 249 i~e--neGVvtIaaTN~p~~LD~aiRs--RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik 324 (368)
T COG1223 249 IKE--NEGVVTIAATNRPELLDPAIRS--RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK 324 (368)
T ss_pred ccc--CCceEEEeecCChhhcCHHHHh--hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH
Confidence 964 5679999999999999999999 999999999999999999999999987777766666666544 59988876
Q ss_pred C
Q 040638 419 E 419 (419)
Q Consensus 419 e 419 (419)
|
T Consensus 325 e 325 (368)
T COG1223 325 E 325 (368)
T ss_pred H
Confidence 4
No 30
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=1.7e-27 Score=238.52 Aligned_cols=206 Identities=23% Similarity=0.324 Sum_probs=162.0
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
+..+|++++|.++++++|.+.+..++.+++.|..+|+.+++|+|||||||||||++++++|+.++.+++.+....+.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~ 196 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKY 196 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHh
Confidence 33489999999999999999999999999999999999999999999999999999999999999998887655431
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....++.+|..+ ..|+||+|||+|.+...+.....+ .+ ...+.++..+++.+|
T Consensus 197 ~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~---------~~-------------~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 197 IGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTS---------GD-------------REVQRTLMQLLAELD 254 (364)
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCC---------cc-------------HHHHHHHHHHHHHhh
Confidence 223455666544 468999999999886532211100 00 123567788999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCC---ChHHHHHHHhcCCCCcc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHP---LFSEVEELIEQTKVTPA 415 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~---l~~~i~~l~~~~~~tpa 415 (419)
++... +.+.+|+|||+++.+|++++||||||..|+++.|+.++|.+|++.++...... .++++....+ ++|++
T Consensus 255 ~~~~~--~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~--g~sg~ 330 (364)
T TIGR01242 255 GFDPR--GNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTE--GASGA 330 (364)
T ss_pred CCCCC--CCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcC--CCCHH
Confidence 87432 45889999999999999999999999999999999999999999998764332 2334444333 48888
Q ss_pred ccc
Q 040638 416 EVA 418 (419)
Q Consensus 416 ~v~ 418 (419)
||.
T Consensus 331 dl~ 333 (364)
T TIGR01242 331 DLK 333 (364)
T ss_pred HHH
Confidence 874
No 31
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.5e-28 Score=232.50 Aligned_cols=201 Identities=19% Similarity=0.305 Sum_probs=162.9
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcC-ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-----
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVG-KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE----- 263 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~----- 263 (419)
+|++++|.+++|+++.+.+..++.++++|...+ ..+++|+|||||||||||.+|+|+|.+.+..++.+.++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfg 169 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFG 169 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHH
Confidence 899999999999999999999999999998544 35778999999999999999999999999999999998874
Q ss_pred -ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 264 -GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 264 -~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
++..++.+|.-+. +||||+|||+|.++..++ ...+ -.-...-.+|....||+
T Consensus 170 E~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~--s~dH-----------------------Ea~a~mK~eFM~~WDGl 224 (386)
T KOG0737|consen 170 EAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRR--STDH-----------------------EATAMMKNEFMALWDGL 224 (386)
T ss_pred HHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcc--cchH-----------------------HHHHHHHHHHHHHhccc
Confidence 3445566665553 699999999999887441 1111 01245566788889999
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCC---ChHHHHHHHhcCCCCcccc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHP---LFSEVEELIEQTKVTPAEV 417 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~---l~~~i~~l~~~~~~tpa~v 417 (419)
.+..+..++|.++||+|..||.|++| ||...++++.|+.++|.+|++-+|..+... -+.++....+ +||+.||
T Consensus 225 ~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~--GySGSDL 300 (386)
T KOG0737|consen 225 SSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTE--GYSGSDL 300 (386)
T ss_pred cCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcC--CCcHHHH
Confidence 87755557777899999999999999 999999999999999999999999987543 2344444444 4998887
Q ss_pred cC
Q 040638 418 AE 419 (419)
Q Consensus 418 ~e 419 (419)
.|
T Consensus 301 ke 302 (386)
T KOG0737|consen 301 KE 302 (386)
T ss_pred HH
Confidence 53
No 32
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.95 E-value=1.8e-27 Score=264.03 Aligned_cols=175 Identities=15% Similarity=0.139 Sum_probs=136.1
Q ss_pred hchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC----------------------------
Q 040638 213 KRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG---------------------------- 264 (419)
Q Consensus 213 ~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~---------------------------- 264 (419)
.++..+.++|..+++|+||+||||||||.||+|+|++.+++++.+.++.+-.
T Consensus 1617 ~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1617 HGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred cCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 3566778899999999999999999999999999999999999888765421
Q ss_pred ---------------------hHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHH
Q 040638 265 ---------------------NKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLI 321 (419)
Q Consensus 265 ---------------------~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (419)
...++.+|..+ .+||||+|||||++... . .
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~----d----s------------------- 1749 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVN----E----S------------------- 1749 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCC----c----c-------------------
Confidence 01256677655 57999999999998641 0 0
Q ss_pred HHHHHHHHHHhHHHHhcCcccC-CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCCh
Q 040638 322 LFVERILETFGLLNFTNGLWSS-SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLF 400 (419)
Q Consensus 322 ~~~~~~~~ls~Ll~~ldg~~s~-~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~ 400 (419)
...++.+|++.|||.... +..+++||+|||+|+.|||||+||||||++|+++.|+..+|++++...+...+.++.
T Consensus 1750 ----~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~ 1825 (2281)
T CHL00206 1750 ----NYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLE 1825 (2281)
T ss_pred ----ceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCC
Confidence 135688899999987532 345689999999999999999999999999999999999999988765433222222
Q ss_pred ---HHHHHHHhc-CCCCccccc
Q 040638 401 ---SEVEELIEQ-TKVTPAEVA 418 (419)
Q Consensus 401 ---~~i~~l~~~-~~~tpa~v~ 418 (419)
.++..+.+. .++|+|||+
T Consensus 1826 ~~~vdl~~LA~~T~GfSGADLa 1847 (2281)
T CHL00206 1826 KKMFHTNGFGSITMGSNARDLV 1847 (2281)
T ss_pred cccccHHHHHHhCCCCCHHHHH
Confidence 134555554 469999986
No 33
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=5.7e-27 Score=249.56 Aligned_cols=206 Identities=22% Similarity=0.346 Sum_probs=164.2
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
..+|++++|....++++.+ +..++..++.|..++...++|+||+||||||||++++++|++++.+++.++.+.+
T Consensus 148 ~~~~~di~g~~~~~~~l~~-i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~ 226 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAE-LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV 226 (644)
T ss_pred hCcHHHHcCHHHHHHHHHH-HHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhh
Confidence 4589999999999999865 4455777888888999999999999999999999999999999999999887654
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
.....++.+|..+ ..||||||||||.+...+.....+ +. .....++++||..||+
T Consensus 227 g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g-------~~---------------~~~~~~ln~lL~~mdg 284 (644)
T PRK10733 227 GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGG-------GH---------------DEREQTLNQMLVEMDG 284 (644)
T ss_pred cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCC-------Cc---------------hHHHHHHHHHHHhhhc
Confidence 2346677788665 468999999999987532211100 00 1235688999999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~v~ 418 (419)
+.+. ..+++|+|||+|+.||||++||||||++|+++.|+.++|.+|++.|+.........++..+.+. .++|+|||.
T Consensus 285 ~~~~--~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 285 FEGN--EGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 362 (644)
T ss_pred ccCC--CCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH
Confidence 9654 4589999999999999999999999999999999999999999999987543322334455554 369999985
No 34
>PF14363 AAA_assoc: Domain associated at C-terminal with AAA
Probab=99.94 E-value=8.9e-27 Score=188.88 Aligned_cols=97 Identities=37% Similarity=0.666 Sum_probs=93.2
Q ss_pred hCCHHHHHHHHHHHHHhhh-ccCCceEEEEeecCCccCchhhHHHHHHHhCCCCCCccCeeeeecCCCCCceeEeccCCc
Q 040638 28 YLPDEVSSYFDQKFKNFIA-RIYSELTLVIEEYDDGLNRNKLFKAAKLCLEPKIPPNVNRIKINLPKKESEVSLSVEKNQ 106 (419)
Q Consensus 28 ~~P~~l~~~~~~~~~~~~~-~~~~~~ti~i~e~~~g~~~n~~y~a~~~YL~t~~~~~~~rl~~~~~~~~~~~~~~~~~~~ 106 (419)
|||++||+++.+++++++. +++||+||+|+|+ +|+.+|++|+||++||+++++++++||++++.+++++++++|++|+
T Consensus 1 ~~P~~lr~~~~~~~~~~~~~~~s~~~ti~I~E~-~g~~~N~ly~a~~~YL~s~~s~~a~rL~~~~~~~~~~~~l~l~~~e 79 (98)
T PF14363_consen 1 LLPHELRSYLRSLLRRLFSSRFSPYLTIVIPEF-DGLSRNELYDAAQAYLSSKISPSARRLKASKSKNSKNLVLSLDDGE 79 (98)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCCcEEEEEEeC-CCccccHHHHHHHHHHhhccCcccceeeecccCCCCceEEecCCCC
Confidence 6899999999999988876 8999999999999 7999999999999999999999999999999999999999999999
Q ss_pred eEEEeecCeEEEEEEeeec
Q 040638 107 AVVDVFNGVRLKWKFELKP 125 (419)
Q Consensus 107 ~~~d~~~g~~~~w~~~~~~ 125 (419)
+|+|+|+|+++||.+++++
T Consensus 80 ~V~D~F~Gv~v~W~~~~~e 98 (98)
T PF14363_consen 80 EVVDVFEGVKVWWSSVCTE 98 (98)
T ss_pred EEEEEECCEEEEEEEEccC
Confidence 9999999999999998864
No 35
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.5e-25 Score=239.98 Aligned_cols=202 Identities=22% Similarity=0.286 Sum_probs=164.5
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC-----CcEEEEEe----
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-----FDVYDLEL---- 259 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-----~~v~~l~l---- 259 (419)
.+|++++|...++.++.+.+-.++-+++.|.++++.++||+|||||||||||++++|+|+.+. ..++.-..
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~l 341 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCL 341 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhh
Confidence 489999999999999999999999999999999999999999999999999999999999882 23332222
Q ss_pred -ccc-CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 260 -SSV-EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 260 -~~~-~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
.++ +.+..++-+|..+ .+|+||++||||-+.+++...... ...-..+.||.
T Consensus 342 skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEq-------------------------ih~SIvSTLLa 396 (1080)
T KOG0732|consen 342 SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQ-------------------------IHASIVSTLLA 396 (1080)
T ss_pred ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHH-------------------------hhhhHHHHHHH
Confidence 222 3567889999776 579999999999998866443321 13456778999
Q ss_pred HhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH-hc-CCCC
Q 040638 336 FTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI-EQ-TKVT 413 (419)
Q Consensus 336 ~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~-~~-~~~t 413 (419)
.|||+-+ .+++++|++||+++.+||||+||||||..+++|+|+.++|..|+..+-....+++.......+ +. .++-
T Consensus 397 LmdGlds--RgqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 397 LMDGLDS--RGQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred hccCCCC--CCceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccc
Confidence 9999965 477999999999999999999999999999999999999999999988887777665544333 22 2455
Q ss_pred cccc
Q 040638 414 PAEV 417 (419)
Q Consensus 414 pa~v 417 (419)
.||+
T Consensus 475 gaDl 478 (1080)
T KOG0732|consen 475 GADL 478 (1080)
T ss_pred hHHH
Confidence 5554
No 36
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=3.7e-25 Score=240.00 Aligned_cols=202 Identities=24% Similarity=0.321 Sum_probs=162.1
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-----
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE----- 263 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~----- 263 (419)
.+|++++|.+++++.|.+.+..++.+++.|.++|+.+++|+|||||||||||++++++|++++.+++.++...+.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g 254 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYG 254 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccccc
Confidence 489999999999999999999999999999999999999999999999999999999999999999988876542
Q ss_pred -ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 264 -GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 264 -~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
....++.+|..+ ..|+||+|||||.+...++.... .........|++.||++
T Consensus 255 ~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~-------------------------~~~~~~~~~Ll~~ld~l 309 (733)
T TIGR01243 255 ESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTG-------------------------EVEKRVVAQLLTLMDGL 309 (733)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcc-------------------------hHHHHHHHHHHHHhhcc
Confidence 345678888665 46899999999998763221100 01245677899999998
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCcccc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPAEV 417 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~v 417 (419)
... +.+++|+|||+++.|||++.||||||.+|+++.|+.++|.+|++.+.......-...+..+.+. .+++++|+
T Consensus 310 ~~~--~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl 385 (733)
T TIGR01243 310 KGR--GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADL 385 (733)
T ss_pred ccC--CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHH
Confidence 543 4578888999999999999999999999999999999999999988765432212223444433 24777765
No 37
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.7e-25 Score=223.06 Aligned_cols=202 Identities=23% Similarity=0.302 Sum_probs=173.0
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc----
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV---- 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~---- 262 (419)
++.+ ++++|....-..+.+.+..++..+..+...|.++++|+|+|||||||||.+++|+|++.+..++.++...+
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5667 88999999999999999999999999999999999999999999999999999999999999999998876
Q ss_pred --CChHHHHHHHHHcc--C-CeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 263 --EGNKHLRKVLIATE--N-KSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 263 --~~~~~l~~l~~~~~--~-~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
++++.||+.|..+. + |+||+|||||.+.+.+..... ......++|+..|
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--------------------------~e~Rv~sqlltL~ 312 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--------------------------VESRVVSQLLTLL 312 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--------------------------HHHHHHHHHHHHH
Confidence 46789999998763 4 999999999999873332211 1367888999999
Q ss_pred cCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh-cCCCCccc
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE-QTKVTPAE 416 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~-~~~~tpa~ 416 (419)
||+-+ .+.+++++|||+|+.|||++.| ||||..++++.|+..+|.+|++.+.....+.-..+++.+.. ..+++.||
T Consensus 313 dg~~~--~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaD 389 (693)
T KOG0730|consen 313 DGLKP--DAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGAD 389 (693)
T ss_pred hhCcC--cCcEEEEEecCCccccChhhhc-CCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHH
Confidence 99953 4668999999999999999999 99999999999999999999999998876663345555544 45799888
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
++
T Consensus 390 L~ 391 (693)
T KOG0730|consen 390 LA 391 (693)
T ss_pred HH
Confidence 74
No 38
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.3e-24 Score=215.53 Aligned_cols=202 Identities=22% Similarity=0.267 Sum_probs=168.9
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-----
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE----- 263 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~----- 263 (419)
-.|++++|+...|+.+.+.+..++.+++.|..+ .++.+|+||.||||+|||+|++|||.+.+..++.+..+++.
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~gl-r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~G 228 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGL-REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVG 228 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhcc-ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccC
Confidence 489999999999999999999999999999875 45567999999999999999999999999999999988873
Q ss_pred -ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 264 -GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 264 -~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
++..++.+|.-+ .+|+||||||||.++..+ .....+. ......++|..+|+.
T Consensus 229 e~eK~vralf~vAr~~qPsvifidEidslls~R--s~~e~e~-----------------------srr~ktefLiq~~~~ 283 (428)
T KOG0740|consen 229 ESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR--SDNEHES-----------------------SRRLKTEFLLQFDGK 283 (428)
T ss_pred hHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc--CCccccc-----------------------chhhhhHHHhhhccc
Confidence 346677777544 579999999999998733 3322221 245666788889999
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCCh-HHHHHHHhcC-CCCccccc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLF-SEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~v~ 418 (419)
.+...+.+++|+|||.|+.+|.|++| ||-..+++|.|+.++|..+++++|....|.+. .+++.+.+-+ ++|..||.
T Consensus 284 ~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~ 361 (428)
T KOG0740|consen 284 NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT 361 (428)
T ss_pred cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH
Confidence 88776778888899999999999999 99999999999999999999999998766665 4666666644 48888763
No 39
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.5e-24 Score=213.46 Aligned_cols=209 Identities=22% Similarity=0.321 Sum_probs=150.2
Q ss_pred ccCCC-Cccccc--cchhhHHHH-HHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc-EEEEEe
Q 040638 185 LDHPS-TFDTLA--MVTDMKKMI-MDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD-VYDLEL 259 (419)
Q Consensus 185 ~~~p~-~f~~l~--g~~~~k~~i-~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~-v~~l~l 259 (419)
+-+|. .|++++ |.+.--..| ......-.-.|++..++|++.-+|+|||||||||||.+|+.|...|+.. --.++.
T Consensus 211 ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNG 290 (744)
T KOG0741|consen 211 IINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNG 290 (744)
T ss_pred ccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCc
Confidence 45666 888864 433222222 2222222346889999999999999999999999999999999999753 222333
Q ss_pred ccc------CChHHHHHHHHHcc----------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHH
Q 040638 260 SSV------EGNKHLRKVLIATE----------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILF 323 (419)
Q Consensus 260 ~~~------~~~~~l~~l~~~~~----------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (419)
..+ ++++.+|++|..+. .--||++||||+++..++....+.+-
T Consensus 291 PeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGV--------------------- 349 (744)
T KOG0741|consen 291 PEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGV--------------------- 349 (744)
T ss_pred HHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCc---------------------
Confidence 332 46889999997763 24699999999998743332221111
Q ss_pred HHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC-CCC-ChH
Q 040638 324 VERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT-EHP-LFS 401 (419)
Q Consensus 324 ~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~-~~~-l~~ 401 (419)
......+||.-|||.-.- .++++|..||++|.||+||+||||+.++++++.|+.+.|.+|++-+-..- .|. +.+
T Consensus 350 --hD~VVNQLLsKmDGVeqL--NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~ 425 (744)
T KOG0741|consen 350 --HDTVVNQLLSKMDGVEQL--NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSA 425 (744)
T ss_pred --cHHHHHHHHHhcccHHhh--hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCC
Confidence 245678899999999543 56999999999999999999999999999999999999999999887752 222 221
Q ss_pred --HHHHHHh-cCCCCccccc
Q 040638 402 --EVEELIE-QTKVTPAEVA 418 (419)
Q Consensus 402 --~i~~l~~-~~~~tpa~v~ 418 (419)
+++++.. ..++|+|||.
T Consensus 426 dVdl~elA~lTKNfSGAEle 445 (744)
T KOG0741|consen 426 DVDLKELAALTKNFSGAELE 445 (744)
T ss_pred CcCHHHHHHHhcCCchhHHH
Confidence 2334433 2349999874
No 40
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.82 E-value=5.8e-20 Score=156.42 Aligned_cols=123 Identities=30% Similarity=0.449 Sum_probs=99.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC------ChHHHHHHHHHc--cC-CeEEEEecCcccccccchhhhc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE------GNKHLRKVLIAT--EN-KSILVVEDIDCCTELQDRSAQA 299 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~------~~~~l~~l~~~~--~~-~sIlviddiD~~~~~~~~~~~~ 299 (419)
+||+||||||||++++++|+.++.+++.+++..+. ....++.++..+ .. |+||+|||+|.+.... ..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---~~- 76 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---QP- 76 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---ST-
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc---cc-
Confidence 68999999999999999999999999999998774 345677777665 34 8999999999987633 10
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCC
Q 040638 300 RTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSY 378 (419)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~ 378 (419)
... ......+..|++.++..... ...+++|+|||.++.+||+++| |||+..|++|.
T Consensus 77 -~~~--------------------~~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~~ 132 (132)
T PF00004_consen 77 -SSS--------------------SFEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLR-SRFDRRIEFPL 132 (132)
T ss_dssp -SSS--------------------HHHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-S
T ss_pred -ccc--------------------cccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHh-CCCcEEEEcCC
Confidence 000 22466778899999998654 3568999999999999999998 99999999874
No 41
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.82 E-value=5.9e-19 Score=161.36 Aligned_cols=183 Identities=17% Similarity=0.201 Sum_probs=122.3
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~ 265 (419)
-+|.+|++++|++++++.+.-.+.....+.+. -..+|||||||+||||||+.||++++.++..++...+...
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~--------l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~ 89 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKRGEA--------LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA 89 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS-----------EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhcCCC--------cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH
Confidence 47999999999999998875444443322221 2349999999999999999999999999999888777778
Q ss_pred HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc----
Q 040638 266 KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---- 341 (419)
Q Consensus 266 ~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---- 341 (419)
.++..++.....+.|||||||+.+-. ....-|+..|+...
T Consensus 90 ~dl~~il~~l~~~~ILFIDEIHRlnk------------------------------------~~qe~LlpamEd~~idii 133 (233)
T PF05496_consen 90 GDLAAILTNLKEGDILFIDEIHRLNK------------------------------------AQQEILLPAMEDGKIDII 133 (233)
T ss_dssp HHHHHHHHT--TT-EEEECTCCC--H------------------------------------HHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEechhhccH------------------------------------HHHHHHHHHhccCeEEEE
Confidence 88999998888899999999997732 12223455554332
Q ss_pred -cCCC---------CCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHH-HHhcC
Q 040638 342 -SSSG---------DERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEE-LIEQT 410 (419)
Q Consensus 342 -s~~g---------~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~-l~~~~ 410 (419)
.... ...-+|++|++...|.++|.. ||.....+.+.+.++..+|+++.......++.++... +....
T Consensus 134 iG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rs 211 (233)
T PF05496_consen 134 IGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRS 211 (233)
T ss_dssp BSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCT
T ss_pred eccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhc
Confidence 1111 124678999999999999999 9999999999999999999999887777777665544 33344
Q ss_pred CCCc
Q 040638 411 KVTP 414 (419)
Q Consensus 411 ~~tp 414 (419)
..||
T Consensus 212 rGtP 215 (233)
T PF05496_consen 212 RGTP 215 (233)
T ss_dssp TTSH
T ss_pred CCCh
Confidence 5555
No 42
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.75 E-value=2.8e-17 Score=157.39 Aligned_cols=179 Identities=13% Similarity=0.189 Sum_probs=121.8
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccC---ceEEeCCCCCcHHHHHHHHHHHcC-------CcEEEEEec
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKR---GYLLFGPLGTGKSSLIAAMANYLH-------FDVYDLELS 260 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r---G~LL~GPpGtGKTsL~~aiA~~l~-------~~v~~l~l~ 260 (419)
+++++|.+++|++|.+-+...... ....+.|..... .++|+||||||||++|+++|+.+. .+++.++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~-~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQIN-EKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 578999999999998766555433 334445654333 489999999999999999998762 245555544
Q ss_pred ccC------ChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHH
Q 040638 261 SVE------GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334 (419)
Q Consensus 261 ~~~------~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll 334 (419)
.+. ....++.+|..+ .++||||||+|.+.. . .. . . .....+..|+
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~L~~--~--~~-~-~----------------------~~~~~i~~Ll 134 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYSLAR--G--GE-K-D----------------------FGKEAIDTLV 134 (261)
T ss_pred HhhhhhccchHHHHHHHHHhc-cCCEEEEechhhhcc--C--Cc-c-c----------------------hHHHHHHHHH
Confidence 431 234556666655 468999999998752 0 00 0 0 0122344577
Q ss_pred HHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHH
Q 040638 335 NFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEE 405 (419)
Q Consensus 335 ~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~ 405 (419)
..|+.. .+..++|++++..+ .++|+|.+ ||+.+|++|.++.+++.+|++.++......+.++...
T Consensus 135 ~~~e~~----~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~ 204 (261)
T TIGR02881 135 KGMEDN----RNEFVLILAGYSDEMDYFLSLNPGLRS--RFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKW 204 (261)
T ss_pred HHHhcc----CCCEEEEecCCcchhHHHHhcChHHHh--ccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHH
Confidence 777664 23456666654332 37899999 9999999999999999999999998766556555433
No 43
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.75 E-value=4e-17 Score=161.43 Aligned_cols=184 Identities=18% Similarity=0.206 Sum_probs=136.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~ 265 (419)
-.|.+|++++|.++.++.+...+....... ...+.++||||||||||++++++|++++.++.......+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~ 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAKKRG--------EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHHhcC--------CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh
Confidence 368899999999999998877665443221 234579999999999999999999999999887777666666
Q ss_pred HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc----
Q 040638 266 KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---- 341 (419)
Q Consensus 266 ~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---- 341 (419)
..+..++.....++||+|||||.+.... ... |.+.|+...
T Consensus 91 ~~l~~~l~~l~~~~vl~IDEi~~l~~~~---------------------------------~e~---l~~~~e~~~~~~~ 134 (328)
T PRK00080 91 GDLAAILTNLEEGDVLFIDEIHRLSPVV---------------------------------EEI---LYPAMEDFRLDIM 134 (328)
T ss_pred HHHHHHHHhcccCCEEEEecHhhcchHH---------------------------------HHH---HHHHHHhcceeee
Confidence 7788888887889999999999774300 000 122222110
Q ss_pred -----cC-----CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH-HHHHHhcC
Q 040638 342 -----SS-----SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE-VEELIEQT 410 (419)
Q Consensus 342 -----s~-----~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~ 410 (419)
+. .-....+|++||++..++++|.+ ||+..+++++++.+++.+++++........+.++ +..+++..
T Consensus 135 l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~ 212 (328)
T PRK00080 135 IGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRS 212 (328)
T ss_pred eccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHc
Confidence 00 01235788999999999999998 9999999999999999999999988776666554 34455555
Q ss_pred CCCcc
Q 040638 411 KVTPA 415 (419)
Q Consensus 411 ~~tpa 415 (419)
+-+|.
T Consensus 213 ~G~pR 217 (328)
T PRK00080 213 RGTPR 217 (328)
T ss_pred CCCch
Confidence 55553
No 44
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=8.9e-18 Score=158.71 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=132.6
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcC-ccccCceEEeCCCCCcHHHHHHHHHHHcCC---------cEEEEEe
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVG-KAWKRGYLLFGPLGTGKSSLIAAMANYLHF---------DVYDLEL 259 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~---------~v~~l~l 259 (419)
-|+.|+-+..+|++++......+.-.+.-.... +.|.|-+|||||||||||||++|+|..|.. .+++++.
T Consensus 140 lWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEins 219 (423)
T KOG0744|consen 140 LWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINS 219 (423)
T ss_pred hHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEeh
Confidence 477888899999999988776664333222222 678889999999999999999999998832 3445555
Q ss_pred ccc------CChHHHHHHHHHcc-----CC--eEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 260 SSV------EGNKHLRKVLIATE-----NK--SILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 260 ~~~------~~~~~l~~l~~~~~-----~~--sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
.++ ++.+.+.++|.+.. .. ..++|||++.+...+....... +++ +.
T Consensus 220 hsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~--------Eps-------------Da 278 (423)
T KOG0744|consen 220 HSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRN--------EPS-------------DA 278 (423)
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCC--------CCc-------------hH
Confidence 544 34556667776552 22 3445999998876443322221 121 23
Q ss_pred HHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 327 ILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 327 ~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
-+....+|..||.+-.. .++++.+|+|-.+.||.|+.. |-|...++++|+.+++.+|++..+.
T Consensus 279 IRvVNalLTQlDrlK~~--~NvliL~TSNl~~siD~AfVD--RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 279 IRVVNALLTQLDRLKRY--PNVLILATSNLTDSIDVAFVD--RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHHHHHHHHHHHHhccC--CCEEEEeccchHHHHHHHhhh--HhhheeecCCccHHHHHHHHHHHHH
Confidence 56778899999999554 458888899999999999999 9999999999999999999998765
No 45
>CHL00181 cbbX CbbX; Provisional
Probab=99.73 E-value=3.8e-17 Score=158.14 Aligned_cols=176 Identities=18% Similarity=0.194 Sum_probs=122.9
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCcccc-Cc--eEEeCCCCCcHHHHHHHHHHHcC-------CcEEEEEecc
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWK-RG--YLLFGPLGTGKSSLIAAMANYLH-------FDVYDLELSS 261 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~-rG--~LL~GPpGtGKTsL~~aiA~~l~-------~~v~~l~l~~ 261 (419)
++++|.+++|++|.+.+.. ......+.+.|...+ .| ++|+||||||||++|+++|..+. .+++.++.+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~-~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAAL-LLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 4799999999999876644 445567777887665 35 89999999999999999999862 2456666443
Q ss_pred cC------ChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 262 VE------GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 262 ~~------~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
+. .....+.++..+ .++||||||+|.+..... . .. -.......|+.
T Consensus 102 l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~~~l~~~~~--~--~~-----------------------~~~e~~~~L~~ 153 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKA-MGGVLFIDEAYYLYKPDN--E--RD-----------------------YGSEAIEILLQ 153 (287)
T ss_pred HHHHHhccchHHHHHHHHHc-cCCEEEEEccchhccCCC--c--cc-----------------------hHHHHHHHHHH
Confidence 31 223344555554 468999999998753110 0 00 01234456777
Q ss_pred HhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH
Q 040638 336 FTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE 402 (419)
Q Consensus 336 ~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 402 (419)
.|+.. .+..+||++++... .++|+|.+ ||+.+|+|+.++.+++.+|+..++......+.++
T Consensus 154 ~me~~----~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~ 219 (287)
T CHL00181 154 VMENQ----RDDLVVIFAGYKDRMDKFYESNPGLSS--RIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPE 219 (287)
T ss_pred HHhcC----CCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChh
Confidence 77654 24467777765322 34699999 9999999999999999999999998765555443
No 46
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.2e-17 Score=160.08 Aligned_cols=171 Identities=19% Similarity=0.203 Sum_probs=128.0
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-----
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE----- 263 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~----- 263 (419)
..|++++..+.+++.|.+......+- +....+-|.+|+|||||||||++++-+|...|.|+-.+...++.
T Consensus 352 ~pl~~ViL~psLe~Rie~lA~aTaNT-----K~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~q 426 (630)
T KOG0742|consen 352 DPLEGVILHPSLEKRIEDLAIATANT-----KKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQ 426 (630)
T ss_pred CCcCCeecCHHHHHHHHHHHHHhccc-----ccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccchH
Confidence 46999999999999985433333222 22345567899999999999999999999999998877776662
Q ss_pred ChHHHHHHHHHc---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 264 GNKHLRKVLIAT---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 264 ~~~~l~~l~~~~---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
.-..+.++|.-+ .+.-++||||.|+++..++...... .....+..||- -.|-
T Consensus 427 aVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSE------------------------aqRsaLNAlLf-RTGd 481 (630)
T KOG0742|consen 427 AVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSE------------------------AQRSALNALLF-RTGD 481 (630)
T ss_pred HHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcH------------------------HHHHHHHHHHH-Hhcc
Confidence 346677888543 3456788999999887444333211 12344444443 3343
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.| ..+++|++||+|+++|-|+-. |+|..|+||.|..++|..|+..||..
T Consensus 482 qS---rdivLvlAtNrpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 482 QS---RDIVLVLATNRPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred cc---cceEEEeccCCccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHHH
Confidence 32 458899999999999999999 99999999999999999999999874
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.73 E-value=4.2e-17 Score=157.78 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=125.1
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccc---cCceEEeCCCCCcHHHHHHHHHHHcCC-------cEEEEEeccc
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAW---KRGYLLFGPLGTGKSSLIAAMANYLHF-------DVYDLELSSV 262 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rG~LL~GPpGtGKTsL~~aiA~~l~~-------~v~~l~l~~~ 262 (419)
.++|.+++|++|.+.+.. ...++.+.+.|+.. ..+++|+||||||||++|+++|..+.. +++.++.+.+
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 689999999999776555 66667777888764 346999999999999999999988732 4666665433
Q ss_pred C------ChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 263 E------GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 263 ~------~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
. +...++.+|..+ .+++|||||+|.+....+... ........|+..
T Consensus 102 ~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~L~~~~~~~~---------------------------~~~~~~~~Ll~~ 153 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRA-MGGVLFIDEAYYLYRPDNERD---------------------------YGQEAIEILLQV 153 (284)
T ss_pred hHhhcccchHHHHHHHHHc-cCcEEEEechhhhccCCCccc---------------------------hHHHHHHHHHHH
Confidence 1 223455566654 458999999997743111000 012344567777
Q ss_pred hcCcccCCCCCEEEEEecCCC--C---CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH
Q 040638 337 TNGLWSSSGDERIIVFTTNHK--D---RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV 403 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~--~---~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i 403 (419)
|+.. ..+.++|++++.. + .++|+|.+ ||+.+|+||.++.+++..|+++++......+.++.
T Consensus 154 le~~----~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a 219 (284)
T TIGR02880 154 MENQ----RDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEA 219 (284)
T ss_pred HhcC----CCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHH
Confidence 7654 2456777776532 3 24899999 99999999999999999999999987655554443
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.71 E-value=2.5e-16 Score=154.03 Aligned_cols=179 Identities=18% Similarity=0.195 Sum_probs=129.2
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLR 269 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~ 269 (419)
+|++++|.++.++.+...+......+ ....+++||||||||||+|++++|+.++.++..+..+.......+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~~--------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMRQ--------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhcC--------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHH
Confidence 79999999999999877665443332 1234699999999999999999999999988777665555556677
Q ss_pred HHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc--------
Q 040638 270 KVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW-------- 341 (419)
Q Consensus 270 ~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~-------- 341 (419)
..+.....+.|++|||||.+.... . ..|++.++..-
T Consensus 74 ~~l~~~~~~~vl~iDEi~~l~~~~---------------------------------~---e~l~~~~~~~~~~~v~~~~ 117 (305)
T TIGR00635 74 AILTNLEEGDVLFIDEIHRLSPAV---------------------------------E---ELLYPAMEDFRLDIVIGKG 117 (305)
T ss_pred HHHHhcccCCEEEEehHhhhCHHH---------------------------------H---HHhhHHHhhhheeeeeccC
Confidence 777777788999999999774310 0 01222221110
Q ss_pred ------cCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH-HHHHhcCCCCc
Q 040638 342 ------SSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV-EELIEQTKVTP 414 (419)
Q Consensus 342 ------s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i-~~l~~~~~~tp 414 (419)
........+|++||++..++++|++ ||...+.++.++.++..++++...+.....+.++. +.+.+..+-.|
T Consensus 118 ~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p 195 (305)
T TIGR00635 118 PSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP 195 (305)
T ss_pred ccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc
Confidence 0011236788999999999999999 99999999999999999999998876555555543 44555444444
No 49
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.69 E-value=4.9e-16 Score=145.05 Aligned_cols=182 Identities=19% Similarity=0.233 Sum_probs=140.9
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChH
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNK 266 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~ 266 (419)
+|.+|++.+|++++|+.+.-.+.....+.+.+.+ +|||||||.||||||..||++++.++-..+...+....
T Consensus 21 RP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDH--------vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g 92 (332)
T COG2255 21 RPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDH--------VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG 92 (332)
T ss_pred CcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCe--------EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh
Confidence 6899999999999999887766666555544433 99999999999999999999999999999988899999
Q ss_pred HHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc-----c
Q 040638 267 HLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL-----W 341 (419)
Q Consensus 267 ~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~-----~ 341 (419)
+|..++.......|+|||||+.+..... .-|...|+.+ .
T Consensus 93 DlaaiLt~Le~~DVLFIDEIHrl~~~vE------------------------------------E~LYpaMEDf~lDI~I 136 (332)
T COG2255 93 DLAAILTNLEEGDVLFIDEIHRLSPAVE------------------------------------EVLYPAMEDFRLDIII 136 (332)
T ss_pred hHHHHHhcCCcCCeEEEehhhhcChhHH------------------------------------HHhhhhhhheeEEEEE
Confidence 9999999999999999999998754111 1122222222 1
Q ss_pred cC---------CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHH-HHHhcCC
Q 040638 342 SS---------SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVE-ELIEQTK 411 (419)
Q Consensus 342 s~---------~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~-~l~~~~~ 411 (419)
.. .-...-+|++|.+...|...|.. ||....++.|.+.++..+|+++.-..-+..+.++-. ++.....
T Consensus 137 G~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSR 214 (332)
T COG2255 137 GKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSR 214 (332)
T ss_pred ccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhcc
Confidence 11 00124678999999999999999 999999999999999999999988776666655433 3333444
Q ss_pred CCc
Q 040638 412 VTP 414 (419)
Q Consensus 412 ~tp 414 (419)
-||
T Consensus 215 GTP 217 (332)
T COG2255 215 GTP 217 (332)
T ss_pred CCc
Confidence 555
No 50
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.67 E-value=1.9e-15 Score=140.17 Aligned_cols=178 Identities=21% Similarity=0.231 Sum_probs=141.1
Q ss_pred CCCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCc
Q 040638 177 HDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFD 253 (419)
Q Consensus 177 ~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~ 253 (419)
++....+....|..+++|+|.+.+|+.|++....|+.+. +...+||||+.||||||+++|+.+++ +..
T Consensus 12 ~~~l~~i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~---------pannvLL~G~rGtGKSSlVkall~~y~~~GLR 82 (249)
T PF05673_consen 12 SGYLEPIKHPDPIRLDDLIGIERQKEALIENTEQFLQGL---------PANNVLLWGARGTGKSSLVKALLNEYADQGLR 82 (249)
T ss_pred CCcEEecCCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCC---------CCcceEEecCCCCCHHHHHHHHHHHHhhcCce
Confidence 345666666667799999999999999999999998663 35569999999999999999999987 566
Q ss_pred EEEEEecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 254 VYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 254 v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
++.+.-..+..-..+-..+...+.+-|||+||+- ++. .......|
T Consensus 83 lIev~k~~L~~l~~l~~~l~~~~~kFIlf~DDLs--Fe~---------------------------------~d~~yk~L 127 (249)
T PF05673_consen 83 LIEVSKEDLGDLPELLDLLRDRPYKFILFCDDLS--FEE---------------------------------GDTEYKAL 127 (249)
T ss_pred EEEECHHHhccHHHHHHHHhcCCCCEEEEecCCC--CCC---------------------------------CcHHHHHH
Confidence 7777766666666777777777789999999875 330 01233457
Q ss_pred HHHhcCcccCCCCCEEEEEecCCCCCCCc-----------------------cccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNHKDRLDP-----------------------ALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~~~~Ldp-----------------------ALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
...+||-......+++|.+|+|+..-+.+ +|-. ||...|.|..|+.++..+|+++
T Consensus 128 Ks~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsD--RFGL~l~F~~~~q~~YL~IV~~ 205 (249)
T PF05673_consen 128 KSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSD--RFGLWLSFYPPDQEEYLAIVRH 205 (249)
T ss_pred HHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHH--hCCcEEEecCCCHHHHHHHHHH
Confidence 78889988887888999999997644432 2233 9999999999999999999999
Q ss_pred hhCCCCCCCh
Q 040638 391 YLGITEHPLF 400 (419)
Q Consensus 391 ~l~~~~~~l~ 400 (419)
|+...+.++.
T Consensus 206 ~~~~~g~~~~ 215 (249)
T PF05673_consen 206 YAERYGLELD 215 (249)
T ss_pred HHHHcCCCCC
Confidence 9987776665
No 51
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.65 E-value=1.1e-15 Score=166.80 Aligned_cols=161 Identities=23% Similarity=0.231 Sum_probs=113.7
Q ss_pred Ccc-ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh---
Q 040638 190 TFD-TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN--- 265 (419)
Q Consensus 190 ~f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~--- 265 (419)
.|+ ++.|.+++|+.|.+.+....... ...+..+||+||||||||++++++|+.++.+++.++++.+.+.
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~-------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i 389 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRG-------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEI 389 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhc-------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHH
Confidence 344 47899999999988766443221 1123369999999999999999999999999999987655322
Q ss_pred ------------HHHHHHHHHc-cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 040638 266 ------------KHLRKVLIAT-ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332 (419)
Q Consensus 266 ------------~~l~~l~~~~-~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 332 (419)
..+.+.|..+ ..++||+|||||.+... ... ...+.
T Consensus 390 ~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~--~~~------------------------------~~~~a 437 (775)
T TIGR00763 390 RGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSS--FRG------------------------------DPASA 437 (775)
T ss_pred cCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCc--cCC------------------------------CHHHH
Confidence 2334445443 34569999999988631 000 01122
Q ss_pred HHHHhc---------CcccC--CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 333 LLNFTN---------GLWSS--SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 333 Ll~~ld---------g~~s~--~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
|+..+| ..... .-...++|+|||.++.|+|+|++ ||+ .|+++.++.+++.+|+++|+
T Consensus 438 Ll~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 438 LLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred HHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--Cee-EEecCCCCHHHHHHHHHHHH
Confidence 444443 21110 11357889999999999999999 995 68999999999999999987
No 52
>PRK04195 replication factor C large subunit; Provisional
Probab=99.64 E-value=3.6e-15 Score=154.79 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=125.3
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG 264 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~ 264 (419)
--.|.+|++++|.+++++.+.+.+..+..+ . +++.+|||||||||||++|+++|++++++++.++.+....
T Consensus 7 KyrP~~l~dlvg~~~~~~~l~~~l~~~~~g--------~-~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~ 77 (482)
T PRK04195 7 KYRPKTLSDVVGNEKAKEQLREWIESWLKG--------K-PKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT 77 (482)
T ss_pred hcCCCCHHHhcCCHHHHHHHHHHHHHHhcC--------C-CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc
Confidence 457999999999999999998887766522 1 2678999999999999999999999999999999887765
Q ss_pred hHHHHHHHHHc--------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 265 NKHLRKVLIAT--------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 265 ~~~l~~l~~~~--------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
...++.+.... ..+.||+|||+|.+....+ ......|++.
T Consensus 78 ~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d--------------------------------~~~~~aL~~~ 125 (482)
T PRK04195 78 ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED--------------------------------RGGARAILEL 125 (482)
T ss_pred HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc--------------------------------hhHHHHHHHH
Confidence 55666654332 2478999999998753100 1122345555
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCc-cccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDP-ALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE 402 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~Ldp-ALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 402 (419)
++.. ...+|+++|.+..+++ .|.+ | ...|+|+.|+.++...+++..+..++..+.++
T Consensus 126 l~~~------~~~iIli~n~~~~~~~k~Lrs--r-~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~e 183 (482)
T PRK04195 126 IKKA------KQPIILTANDPYDPSLRELRN--A-CLMIEFKRLSTRSIVPVLKRICRKEGIECDDE 183 (482)
T ss_pred HHcC------CCCEEEeccCccccchhhHhc--c-ceEEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 5522 1347778899888887 5544 3 46799999999999999999987766655544
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=6.2e-15 Score=151.52 Aligned_cols=164 Identities=20% Similarity=0.303 Sum_probs=117.9
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC------------
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------ 252 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------ 252 (419)
.-+|.+|++++|.+++++.+...+. .. ..+.++||||||||||||+|+++|+.++.
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~----~~--------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c 74 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK----KN--------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNEC 74 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCccc
Confidence 3479999999999888776654332 22 23556999999999999999999998864
Q ss_pred ------------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 253 ------------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 253 ------------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
+++.++.+.-.+-..++++.... ....|++|||+|.+..
T Consensus 75 ~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~----------------------- 131 (472)
T PRK14962 75 RACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK----------------------- 131 (472)
T ss_pred HHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH-----------------------
Confidence 46666554333345566654332 2357999999996631
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
..+..|+..++.. ++..++|++|+.+..++++|.+ |+ ..+++..++.++...+++..+..
T Consensus 132 -------------~a~~~LLk~LE~p----~~~vv~Ilattn~~kl~~~L~S--R~-~vv~f~~l~~~el~~~L~~i~~~ 191 (472)
T PRK14962 132 -------------EAFNALLKTLEEP----PSHVVFVLATTNLEKVPPTIIS--RC-QVIEFRNISDELIIKRLQEVAEA 191 (472)
T ss_pred -------------HHHHHHHHHHHhC----CCcEEEEEEeCChHhhhHHHhc--Cc-EEEEECCccHHHHHHHHHHHHHH
Confidence 1234466766654 3457778888888899999998 77 47999999999999999988866
Q ss_pred CCCCChHHH
Q 040638 395 TEHPLFSEV 403 (419)
Q Consensus 395 ~~~~l~~~i 403 (419)
++..+.++.
T Consensus 192 egi~i~~ea 200 (472)
T PRK14962 192 EGIEIDREA 200 (472)
T ss_pred cCCCCCHHH
Confidence 555554443
No 54
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=3.3e-15 Score=154.50 Aligned_cols=168 Identities=20% Similarity=0.190 Sum_probs=119.0
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCcccc-CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHH
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWK-RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV 271 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~-rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l 271 (419)
+..|.+++|++|++.|.-....++ .+ .-+||+||||+|||||+++||..++..++.+.+..+.+++++|.-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~--------~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGH 395 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKK--------LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGH 395 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhcc--------CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccc
Confidence 457899999999998865433221 12 238899999999999999999999999999999999888777631
Q ss_pred ------------H---HHc-cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 272 ------------L---IAT-ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 272 ------------~---~~~-~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
+ .++ ....+++|||||.+.. +-.+ ++.... .....-.+--+
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~s--s~rG-----------DPaSAL----------LEVLDPEQN~~ 452 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGS--SFRG-----------DPASAL----------LEVLDPEQNNT 452 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccC--CCCC-----------ChHHHH----------HhhcCHhhcCc
Confidence 1 111 2456999999998754 1110 000000 00111112223
Q ss_pred HhcCcccC--CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 336 FTNGLWSS--SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 336 ~ldg~~s~--~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
|.|....- .-.++++|+|+|..+.|+.+|+. || ..|+++-.+.++..+|+++||-.
T Consensus 453 F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RM-EiI~lsgYt~~EKl~IAk~~LiP 510 (782)
T COG0466 453 FSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RM-EVIRLSGYTEDEKLEIAKRHLIP 510 (782)
T ss_pred hhhccccCccchhheEEEeecCccccCChHHhc--ce-eeeeecCCChHHHHHHHHHhcch
Confidence 44544333 11358999999999999999999 99 55999999999999999999964
No 55
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.61 E-value=5.1e-15 Score=144.37 Aligned_cols=154 Identities=23% Similarity=0.285 Sum_probs=109.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~ 265 (419)
-+|.++++++|++.+..+- .-|...+... --..++|||||||||||++++||+..+.++..++... .+-
T Consensus 18 mRP~~lde~vGQ~HLlg~~-~~lrr~v~~~---------~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~-~gv 86 (436)
T COG2256 18 LRPKSLDEVVGQEHLLGEG-KPLRRAVEAG---------HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT-SGV 86 (436)
T ss_pred hCCCCHHHhcChHhhhCCC-chHHHHHhcC---------CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc-ccH
Confidence 4699999999987765321 1122222111 1235999999999999999999999999999887533 356
Q ss_pred HHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 266 KHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 266 ~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
++++.++.++. ++.|||||||+.+-. . ....||-.+..
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK----~--------------------------------QQD~lLp~vE~ 130 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNK----A--------------------------------QQDALLPHVEN 130 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh----h--------------------------------hhhhhhhhhcC
Confidence 78888887662 479999999997632 1 11124444322
Q ss_pred cccCCCCCEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 340 LWSSSGDERIIVFTT--NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 340 ~~s~~g~~~iiV~tT--N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
+.+++|++| |..-.|.+||++ |. +..++...+.++.++++++-+..+
T Consensus 131 ------G~iilIGATTENPsF~ln~ALlS--R~-~vf~lk~L~~~di~~~l~ra~~~~ 179 (436)
T COG2256 131 ------GTIILIGATTENPSFELNPALLS--RA-RVFELKPLSSEDIKKLLKRALLDE 179 (436)
T ss_pred ------CeEEEEeccCCCCCeeecHHHhh--hh-heeeeecCCHHHHHHHHHHHHhhh
Confidence 346777644 666789999998 65 568899999999999999955443
No 56
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.9e-14 Score=151.67 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=119.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++|+|++++++.|...+. .. .....|||+||+||||||+++++|+.++.
T Consensus 10 YRPqtFdEVIGQe~Vv~~L~~aL~----~g--------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~ 77 (830)
T PRK07003 10 WRPKDFASLVGQEHVVRALTHALD----GG--------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCR 77 (830)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHh----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccH
Confidence 379999999999998887765542 11 23456999999999999999999998864
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+-.+-..+++++... ....|++|||+|.+..
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------------------ 133 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------------------ 133 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------------------
Confidence 34444433222334566666543 2357999999997732
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
...+.||..|+.. ....++|++||++.+|.+.|++ |+ .++.|..++.++....++..+..+
T Consensus 134 ------------~A~NALLKtLEEP----P~~v~FILaTtd~~KIp~TIrS--RC-q~f~Fk~Ls~eeIv~~L~~Il~~E 194 (830)
T PRK07003 134 ------------HAFNAMLKTLEEP----PPHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPAGHIVSHLERILGEE 194 (830)
T ss_pred ------------HHHHHHHHHHHhc----CCCeEEEEEECChhhccchhhh--he-EEEecCCcCHHHHHHHHHHHHHHc
Confidence 1234466666654 2457899999999999999998 87 789999999999999999988876
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+..+.++
T Consensus 195 gI~id~e 201 (830)
T PRK07003 195 RIAFEPQ 201 (830)
T ss_pred CCCCCHH
Confidence 6555443
No 57
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.5e-14 Score=146.94 Aligned_cols=163 Identities=16% Similarity=0.259 Sum_probs=117.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
-+|.+|++++|.+.+.+.|...+.. . ..+..|||+|||||||||+|+++|+.++.
T Consensus 12 yRP~~f~dvVGQe~iv~~L~~~i~~----~--------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~ 79 (484)
T PRK14956 12 YRPQFFRDVIHQDLAIGALQNALKS----G--------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT 79 (484)
T ss_pred hCCCCHHHHhChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc
Confidence 4799999999999888876554432 1 12345999999999999999999999865
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++...-.+-..++++.... ....|++|||+|.+..
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------------------ 135 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------------------ 135 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH------------------------
Confidence 24444432222334455554322 2356999999997632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....||..++.. .+.+++|++|+.++.|.+++++ |+ .++.|..++.++....++..+..+
T Consensus 136 ------------~A~NALLKtLEEP----p~~viFILaTte~~kI~~TI~S--RC-q~~~f~~ls~~~i~~~L~~i~~~E 196 (484)
T PRK14956 136 ------------QSFNALLKTLEEP----PAHIVFILATTEFHKIPETILS--RC-QDFIFKKVPLSVLQDYSEKLCKIE 196 (484)
T ss_pred ------------HHHHHHHHHhhcC----CCceEEEeecCChhhccHHHHh--hh-heeeecCCCHHHHHHHHHHHHHHc
Confidence 2344466666553 3568899999999999999998 87 568999999999999999888776
Q ss_pred CCCChHHH
Q 040638 396 EHPLFSEV 403 (419)
Q Consensus 396 ~~~l~~~i 403 (419)
+....++.
T Consensus 197 gi~~e~eA 204 (484)
T PRK14956 197 NVQYDQEG 204 (484)
T ss_pred CCCCCHHH
Confidence 65554443
No 58
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=8.4e-15 Score=152.42 Aligned_cols=162 Identities=16% Similarity=0.235 Sum_probs=120.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++|+|.+.+++.|...+..- ..+..|||+||+||||||+++++|+.++.
T Consensus 10 YRPqtFddVIGQe~vv~~L~~al~~g------------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~P 77 (700)
T PRK12323 10 WRPRDFTTLVGQEHVVRALTHALEQQ------------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQP 77 (700)
T ss_pred hCCCcHHHHcCcHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCC
Confidence 47999999999999998776655321 23456999999999999999999999875
Q ss_pred ----------------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcc
Q 040638 253 ----------------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPR 310 (419)
Q Consensus 253 ----------------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~ 310 (419)
+++.++..+-.+-..+++++... .+..|++|||+|.+..
T Consensus 78 CG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~------------------- 138 (700)
T PRK12323 78 CGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN------------------- 138 (700)
T ss_pred CcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-------------------
Confidence 34444443322345566665442 2357999999997632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 311 RDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
...+.||..|+.. .+..++|++||.+.+|.+.+++ |+ .++.|..++.++..+.++.
T Consensus 139 -----------------~AaNALLKTLEEP----P~~v~FILaTtep~kLlpTIrS--RC-q~f~f~~ls~eei~~~L~~ 194 (700)
T PRK12323 139 -----------------HAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPGHIVSHLDA 194 (700)
T ss_pred -----------------HHHHHHHHhhccC----CCCceEEEEeCChHhhhhHHHH--HH-HhcccCCCChHHHHHHHHH
Confidence 2234566666654 3567899999999999999998 87 7799999999999999998
Q ss_pred hhCCCCCCChHH
Q 040638 391 YLGITEHPLFSE 402 (419)
Q Consensus 391 ~l~~~~~~l~~~ 402 (419)
.+..++....++
T Consensus 195 Il~~Egi~~d~e 206 (700)
T PRK12323 195 ILGEEGIAHEVN 206 (700)
T ss_pred HHHHcCCCCCHH
Confidence 887665554443
No 59
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.58 E-value=3e-14 Score=140.09 Aligned_cols=157 Identities=18% Similarity=0.166 Sum_probs=112.6
Q ss_pred CCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 178 DTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 178 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-.|.. ...|.+|++++|.+++++.+...+. . | ..+..+||+||||+|||++++++|+.++.+++.+
T Consensus 9 ~~w~~--kyrP~~~~~~~~~~~~~~~l~~~~~----~-------~-~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i 74 (316)
T PHA02544 9 FMWEQ--KYRPSTIDECILPAADKETFKSIVK----K-------G-RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFV 74 (316)
T ss_pred Cccee--ccCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEe
Confidence 35755 4579999999999999888766553 1 1 2345677899999999999999999999999988
Q ss_pred EecccCChHHHHHHH----HHc---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 258 ELSSVEGNKHLRKVL----IAT---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 258 ~l~~~~~~~~l~~l~----~~~---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
+++. .....++..+ ... ..+.|++|||+|.+.. ....
T Consensus 75 ~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-----------------------------------~~~~ 118 (316)
T PHA02544 75 NGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-----------------------------------ADAQ 118 (316)
T ss_pred ccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-----------------------------------HHHH
Confidence 8876 2223333322 211 3578999999996621 0011
Q ss_pred HhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 040638 331 FGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNY 391 (419)
Q Consensus 331 s~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~ 391 (419)
..|...++... ....+|+|||.+..++++|.+ |+. .+.++.|+.+++..+++.+
T Consensus 119 ~~L~~~le~~~----~~~~~Ilt~n~~~~l~~~l~s--R~~-~i~~~~p~~~~~~~il~~~ 172 (316)
T PHA02544 119 RHLRSFMEAYS----KNCSFIITANNKNGIIEPLRS--RCR-VIDFGVPTKEEQIEMMKQM 172 (316)
T ss_pred HHHHHHHHhcC----CCceEEEEcCChhhchHHHHh--hce-EEEeCCCCHHHHHHHHHHH
Confidence 22344455542 346788999999999999998 884 6899999999988776654
No 60
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=5.9e-14 Score=140.64 Aligned_cols=162 Identities=14% Similarity=0.183 Sum_probs=114.8
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
-.|.+|++++|.+++++.+...+.. . ..+..|||+|||||||||+++++|..+..
T Consensus 10 yrP~~~~~iiGq~~~~~~l~~~~~~----~--------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~ 77 (363)
T PRK14961 10 WRPQYFRDIIGQKHIVTAISNGLSL----G--------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCI 77 (363)
T ss_pred hCCCchhhccChHHHHHHHHHHHHc----C--------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3689999999999988877554421 1 23556999999999999999999998852
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+-..-..+++++... ....|++|||+|.+..
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------------------ 133 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------------------ 133 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------------------
Confidence 34444432212334566665442 2346999999996632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. .+...+|++|+.++.+.+++.. |+ ..++++.++.++....++..+..+
T Consensus 134 ------------~a~naLLk~lEe~----~~~~~fIl~t~~~~~l~~tI~S--Rc-~~~~~~~l~~~el~~~L~~~~~~~ 194 (363)
T PRK14961 134 ------------HSFNALLKTLEEP----PQHIKFILATTDVEKIPKTILS--RC-LQFKLKIISEEKIFNFLKYILIKE 194 (363)
T ss_pred ------------HHHHHHHHHHhcC----CCCeEEEEEcCChHhhhHHHHh--hc-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 1223466666654 2456788888888999999987 76 678999999999999999888776
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+....++
T Consensus 195 g~~i~~~ 201 (363)
T PRK14961 195 SIDTDEY 201 (363)
T ss_pred CCCCCHH
Confidence 5555444
No 61
>PLN03025 replication factor C subunit; Provisional
Probab=99.56 E-value=4.5e-14 Score=139.11 Aligned_cols=168 Identities=18% Similarity=0.187 Sum_probs=114.4
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC-----CcEEEEEe
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-----FDVYDLEL 259 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-----~~v~~l~l 259 (419)
..+|.+|++++|.+++++.|...+ ... .. ..+|||||||||||+++.++|+++. ..+..++.
T Consensus 6 kyrP~~l~~~~g~~~~~~~L~~~~----~~~--------~~-~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~ 72 (319)
T PLN03025 6 KYRPTKLDDIVGNEDAVSRLQVIA----RDG--------NM-PNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA 72 (319)
T ss_pred hcCCCCHHHhcCcHHHHHHHHHHH----hcC--------CC-ceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc
Confidence 457999999999988877764432 211 11 2499999999999999999999972 23445554
Q ss_pred cccCChHHHHHHHHH---c------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 260 SSVEGNKHLRKVLIA---T------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 260 ~~~~~~~~l~~l~~~---~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
++..+-..++..+.. . ....|++|||+|.+.. ...
T Consensus 73 sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~------------------------------------~aq 116 (319)
T PLN03025 73 SDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS------------------------------------GAQ 116 (319)
T ss_pred cccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCH------------------------------------HHH
Confidence 443333445544322 1 2357999999997743 012
Q ss_pred HhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH-HHHHHh
Q 040638 331 FGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE-VEELIE 408 (419)
Q Consensus 331 s~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~ 408 (419)
..|+..++.. +....+|++||....+.++|.+ |+ ..++++.++.++....++..+..++..+.++ ++.+++
T Consensus 117 ~aL~~~lE~~----~~~t~~il~~n~~~~i~~~L~S--Rc-~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~ 188 (319)
T PLN03025 117 QALRRTMEIY----SNTTRFALACNTSSKIIEPIQS--RC-AIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIF 188 (319)
T ss_pred HHHHHHHhcc----cCCceEEEEeCCccccchhHHH--hh-hcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 2345555543 2235678899999999999998 66 5689999999999999998887776655443 333433
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=5.5e-14 Score=143.25 Aligned_cols=150 Identities=21% Similarity=0.264 Sum_probs=108.6
Q ss_pred cCCCCccccccchhhHHH---HHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 186 DHPSTFDTLAMVTDMKKM---IMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~---i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
-+|.+|++++|.+++... +...+ ... ....++|+|||||||||+++++|+.++.+++.++....
T Consensus 6 ~RP~~l~d~vGq~~~v~~~~~L~~~i----~~~---------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~ 72 (413)
T PRK13342 6 MRPKTLDEVVGQEHLLGPGKPLRRMI----EAG---------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS 72 (413)
T ss_pred hCCCCHHHhcCcHHHhCcchHHHHHH----HcC---------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 478999999999877554 43333 221 13369999999999999999999999999988877543
Q ss_pred CChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 263 EGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 263 ~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
+...++.++... ..+.||+|||+|.+.. .....|+..
T Consensus 73 -~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~------------------------------------~~q~~LL~~ 115 (413)
T PRK13342 73 -GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK------------------------------------AQQDALLPH 115 (413)
T ss_pred -cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH------------------------------------HHHHHHHHH
Confidence 344566665443 2578999999997632 111234555
Q ss_pred hcCcccCCCCCEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 337 TNGLWSSSGDERIIVFTT--NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tT--N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
++. +.+++|++| |....++++|++ |+ ..+.++.++.++...+++..+..
T Consensus 116 le~------~~iilI~att~n~~~~l~~aL~S--R~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 116 VED------GTITLIGATTENPSFEVNPALLS--RA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred hhc------CcEEEEEeCCCChhhhccHHHhc--cc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 443 235566544 445689999999 87 77999999999999999998764
No 63
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.55 E-value=6.5e-14 Score=146.16 Aligned_cols=162 Identities=15% Similarity=0.253 Sum_probs=119.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.|...+.. ...+..|||+|||||||||+|+++|+.++.
T Consensus 9 yRPktFddVIGQe~vv~~L~~aI~~------------grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~ 76 (702)
T PRK14960 9 YRPRNFNELVGQNHVSRALSSALER------------GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCA 76 (702)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCH
Confidence 4689999999999998887665531 123467999999999999999999999864
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++.++-.+-..+|+++... .+..|++|||+|.+..
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------------------ 132 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------------------ 132 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------------------
Confidence 45555554333445677766443 2356999999997632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. .+...+|++|+.+..+.+.+++ |+ .+++|..++.++....++..+..+
T Consensus 133 ------------~A~NALLKtLEEP----P~~v~FILaTtd~~kIp~TIlS--RC-q~feFkpLs~eEI~k~L~~Il~kE 193 (702)
T PRK14960 133 ------------HSFNALLKTLEEP----PEHVKFLFATTDPQKLPITVIS--RC-LQFTLRPLAVDEITKHLGAILEKE 193 (702)
T ss_pred ------------HHHHHHHHHHhcC----CCCcEEEEEECChHhhhHHHHH--hh-heeeccCCCHHHHHHHHHHHHHHc
Confidence 1233466666654 2446788888889999999887 77 678999999999999999888776
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+....++
T Consensus 194 gI~id~e 200 (702)
T PRK14960 194 QIAADQD 200 (702)
T ss_pred CCCCCHH
Confidence 6555443
No 64
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=2.1e-14 Score=155.97 Aligned_cols=158 Identities=20% Similarity=0.223 Sum_probs=114.1
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|..++.++|.++..+.+++-|.. .-+.+++|+||||||||++++++|..+ +..++.
T Consensus 177 r~~~l~~~igr~~ei~~~~~~L~~-------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~ 243 (731)
T TIGR02639 177 KNGKIDPLIGREDELERTIQVLCR-------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYS 243 (731)
T ss_pred hcCCCCcccCcHHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEE
Confidence 467899999988777766544422 125679999999999999999999987 778888
Q ss_pred EEecccC--------ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 257 LELSSVE--------GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 257 l~l~~~~--------~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
++++.+. .+..+++++..+. .++||||||||.+.+.......
T Consensus 244 ~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~---------------------------- 295 (731)
T TIGR02639 244 LDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGG---------------------------- 295 (731)
T ss_pred ecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCc----------------------------
Confidence 8876653 2357888887653 4899999999998763211100
Q ss_pred HHHHHh-HHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 327 ILETFG-LLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 327 ~~~ls~-Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
...... |+..+. .++..+|++||..+ .+|+||.| ||. .|+++.|+.+++.+|++.....
T Consensus 296 ~~~~~~~L~~~l~------~g~i~~IgaTt~~e~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 360 (731)
T TIGR02639 296 SMDASNLLKPALS------SGKLRCIGSTTYEEYKNHFEKDRALSR--RFQ-KIDVGEPSIEETVKILKGLKEK 360 (731)
T ss_pred cHHHHHHHHHHHh------CCCeEEEEecCHHHHHHHhhhhHHHHH--hCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 000111 222221 35688888888643 57999999 997 6999999999999999976653
No 65
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=4.6e-14 Score=145.16 Aligned_cols=192 Identities=19% Similarity=0.244 Sum_probs=128.5
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC----CcEEEEEecccCCh--
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH----FDVYDLELSSVEGN-- 265 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~----~~v~~l~l~~~~~~-- 265 (419)
.+++-.+..|++..++...+ ......+||+||+|||||.|++++++++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~sp-----------v~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~ 476 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSP-----------VFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSL 476 (952)
T ss_pred Cceeecchhhhhhhhhhccc-----------ccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhH
Confidence 45666677777766533333 12233599999999999999999999985 44556777777532
Q ss_pred ----HHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 266 ----KHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 266 ----~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
..++.+|... .+|+||++||+||++...+... + +. ......+..++|.+-.
T Consensus 477 e~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~-----~-----q~-------------~~~~~rla~flnqvi~ 533 (952)
T KOG0735|consen 477 EKIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNEN-----G-----QD-------------GVVSERLAAFLNQVIK 533 (952)
T ss_pred HHHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccC-----C-----cc-------------hHHHHHHHHHHHHHHH
Confidence 3345555554 5799999999999987111100 0 00 0112233444543322
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC-CCCChHHHHHHHhcC-CCCcccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT-EHPLFSEVEELIEQT-KVTPAEV 417 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~-~~~l~~~i~~l~~~~-~~tpa~v 417 (419)
.....+..+.+|+|.+....|+|-|..|++|+.++.++.|...+|.+|+++.+... ....+++++-+..++ +|.+-|+
T Consensus 534 ~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL 613 (952)
T KOG0735|consen 534 IYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDL 613 (952)
T ss_pred HHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhH
Confidence 22233344578889999999999999999999999999999999999999998764 233455665544333 4666554
No 66
>PRK06893 DNA replication initiation factor; Validated
Probab=99.53 E-value=9e-14 Score=130.53 Aligned_cols=174 Identities=16% Similarity=0.198 Sum_probs=109.2
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecc
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSS 261 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~ 261 (419)
...+.+||++++.+.. .....+..-. . ......++||||||||||+|++|+|+++ +..+..+.+..
T Consensus 9 ~~~~~~fd~f~~~~~~--~~~~~~~~~~------~---~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~ 77 (229)
T PRK06893 9 QIDDETLDNFYADNNL--LLLDSLRKNF------I---DLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK 77 (229)
T ss_pred CCCcccccccccCChH--HHHHHHHHHh------h---ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH
Confidence 3455699999876532 1222222111 1 1112347999999999999999999987 34555555532
Q ss_pred cCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Q 040638 262 VEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW 341 (419)
Q Consensus 262 ~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~ 341 (419)
. .....+++....+..+|+||||+.+... . ..... |.+.++...
T Consensus 78 ~--~~~~~~~~~~~~~~dlLilDDi~~~~~~--~-----------------------------~~~~~---l~~l~n~~~ 121 (229)
T PRK06893 78 S--QYFSPAVLENLEQQDLVCLDDLQAVIGN--E-----------------------------EWELA---IFDLFNRIK 121 (229)
T ss_pred h--hhhhHHHHhhcccCCEEEEeChhhhcCC--h-----------------------------HHHHH---HHHHHHHHH
Confidence 2 1122344555567789999999976430 0 01122 444444443
Q ss_pred cCCCCCEEEEEecC-CCCCCC---ccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 342 SSSGDERIIVFTTN-HKDRLD---PALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 342 s~~g~~~iiV~tTN-~~~~Ld---pALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
.. +..++|+|+| .|..++ |.|.++.+.+..+.++.|+.+++.++++......+..+.+++...+
T Consensus 122 ~~--~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L 189 (229)
T PRK06893 122 EQ--GKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFL 189 (229)
T ss_pred Hc--CCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 21 2345555554 566654 8999866667899999999999999999888766666666665544
No 67
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.53 E-value=2e-13 Score=141.03 Aligned_cols=162 Identities=17% Similarity=0.247 Sum_probs=117.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+.. ...+.+|||+|||||||||+|+++|+.++.
T Consensus 15 yRP~~f~dliGq~~vv~~L~~ai~~------------~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C 82 (507)
T PRK06645 15 YRPSNFAELQGQEVLVKVLSYTILN------------DRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTC 82 (507)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCC
Confidence 4799999999999888766543321 123567999999999999999999999854
Q ss_pred ---------------cEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcch
Q 040638 253 ---------------DVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRR 311 (419)
Q Consensus 253 ---------------~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~ 311 (419)
+++.++..+-.+-..++.++..+. ...|++|||+|.+..
T Consensus 83 ~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------------- 142 (507)
T PRK06645 83 EQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK-------------------- 142 (507)
T ss_pred CCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------------------
Confidence 333443332234456777765442 457999999996632
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 040638 312 DLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNY 391 (419)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~ 391 (419)
.....|+..++.. ....++|++|+.++++.+++++ |+ ..+++..++.++...+++..
T Consensus 143 ----------------~a~naLLk~LEep----p~~~vfI~aTte~~kI~~tI~S--Rc-~~~ef~~ls~~el~~~L~~i 199 (507)
T PRK06645 143 ----------------GAFNALLKTLEEP----PPHIIFIFATTEVQKIPATIIS--RC-QRYDLRRLSFEEIFKLLEYI 199 (507)
T ss_pred ----------------HHHHHHHHHHhhc----CCCEEEEEEeCChHHhhHHHHh--cc-eEEEccCCCHHHHHHHHHHH
Confidence 1233466666643 3457888888999999999998 77 67899999999999999998
Q ss_pred hCCCCCCChHH
Q 040638 392 LGITEHPLFSE 402 (419)
Q Consensus 392 l~~~~~~l~~~ 402 (419)
+..++....++
T Consensus 200 ~~~egi~ie~e 210 (507)
T PRK06645 200 TKQENLKTDIE 210 (507)
T ss_pred HHHcCCCCCHH
Confidence 88766554433
No 68
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=2.6e-13 Score=140.72 Aligned_cols=162 Identities=18% Similarity=0.284 Sum_probs=116.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
-.|.+|++++|++++++.+...+.. . ..+..+||||||||||||+++++|+.+..
T Consensus 8 yRP~~~~dvvGq~~v~~~L~~~i~~----~--------~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~s 75 (504)
T PRK14963 8 ARPITFDEVVGQEHVKEVLLAALRQ----G--------RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECES 75 (504)
T ss_pred hCCCCHHHhcChHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChh
Confidence 4689999999999988877655442 1 23445899999999999999999998842
Q ss_pred ----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHH
Q 040638 253 ----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQ 316 (419)
Q Consensus 253 ----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (419)
++..++.....+-..++.+.... ..+.|++|||+|.+.
T Consensus 76 c~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls-------------------------- 129 (504)
T PRK14963 76 CLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS-------------------------- 129 (504)
T ss_pred hHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccC--------------------------
Confidence 24555543322334455543222 346799999998552
Q ss_pred HHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC
Q 040638 317 IRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITE 396 (419)
Q Consensus 317 ~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~ 396 (419)
...+..|+..++.. ....++|++||.+..+.+++.+ |+ .+++|..++.++....++..+..++
T Consensus 130 ----------~~a~naLLk~LEep----~~~t~~Il~t~~~~kl~~~I~S--Rc-~~~~f~~ls~~el~~~L~~i~~~eg 192 (504)
T PRK14963 130 ----------KSAFNALLKTLEEP----PEHVIFILATTEPEKMPPTILS--RT-QHFRFRRLTEEEIAGKLRRLLEAEG 192 (504)
T ss_pred ----------HHHHHHHHHHHHhC----CCCEEEEEEcCChhhCChHHhc--ce-EEEEecCCCHHHHHHHHHHHHHHcC
Confidence 12344567766654 3457888889999999999998 76 4799999999999999999887766
Q ss_pred CCChHH
Q 040638 397 HPLFSE 402 (419)
Q Consensus 397 ~~l~~~ 402 (419)
....++
T Consensus 193 i~i~~~ 198 (504)
T PRK14963 193 REAEPE 198 (504)
T ss_pred CCCCHH
Confidence 554443
No 69
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.7e-13 Score=140.71 Aligned_cols=171 Identities=13% Similarity=0.194 Sum_probs=125.3
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL--------------- 250 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l--------------- 250 (419)
.+|.+|++++|++.+++.+...+. . ...+.+|||+||||+||||+|+++|..+
T Consensus 7 yRP~~f~dliGQe~vv~~L~~a~~----~--------~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~ 74 (491)
T PRK14964 7 YRPSSFKDLVGQDVLVRILRNAFT----L--------NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCH 74 (491)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccH
Confidence 468999999999888876654332 1 1235679999999999999999999865
Q ss_pred ---------CCcEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 251 ---------HFDVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 251 ---------~~~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
..+++.++.++-.+-..++.++... ...-|++|||+|.+..
T Consensus 75 ~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------------------ 130 (491)
T PRK14964 75 NCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------------------ 130 (491)
T ss_pred HHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------------------
Confidence 2466777665545556777776544 2456999999986632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. ....++|++|+.+++|.+.++. |+ ..+++..++.++....+...+..+
T Consensus 131 ------------~A~NaLLK~LEeP----p~~v~fIlatte~~Kl~~tI~S--Rc-~~~~f~~l~~~el~~~L~~ia~~E 191 (491)
T PRK14964 131 ------------SAFNALLKTLEEP----APHVKFILATTEVKKIPVTIIS--RC-QRFDLQKIPTDKLVEHLVDIAKKE 191 (491)
T ss_pred ------------HHHHHHHHHHhCC----CCCeEEEEEeCChHHHHHHHHH--hh-eeeecccccHHHHHHHHHHHHHHc
Confidence 2344577777765 3457888889999999999998 76 668999999999999999988877
Q ss_pred CCCChHH-HHHHHhcCC
Q 040638 396 EHPLFSE-VEELIEQTK 411 (419)
Q Consensus 396 ~~~l~~~-i~~l~~~~~ 411 (419)
+..+.++ ++.+++..+
T Consensus 192 gi~i~~eAL~lIa~~s~ 208 (491)
T PRK14964 192 NIEHDEESLKLIAENSS 208 (491)
T ss_pred CCCCCHHHHHHHHHHcC
Confidence 6665544 333444433
No 70
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=8.4e-14 Score=143.51 Aligned_cols=169 Identities=18% Similarity=0.241 Sum_probs=117.1
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHH--
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRK-- 270 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~-- 270 (419)
+.-|..++|++|++.+.--.-+.. .-.+-++|+||||+||||++++||..|+..++.+++..+.+..+++.
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs-------~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGS-------VQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHR 484 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhccc-------CCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccc
Confidence 567889999999998754322111 11223889999999999999999999999999999998876655542
Q ss_pred -------------HHHHc-cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 271 -------------VLIAT-ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 271 -------------l~~~~-~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
.+... ....+++|||||.+.. +..+ ++... ......-.+--||
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~--g~qG-----------DPasA----------LLElLDPEQNanF 541 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGS--GHQG-----------DPASA----------LLELLDPEQNANF 541 (906)
T ss_pred eeeeccCChHHHHHHHhhCCCCceEEeehhhhhCC--CCCC-----------ChHHH----------HHHhcChhhccch
Confidence 22222 3456999999998752 1100 11000 0001111122345
Q ss_pred hcCcccC--CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 337 TNGLWSS--SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 337 ldg~~s~--~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
+|.+..- .-..+++|+|+|..+.|+|+|+. ||. .|+++-...++...|+++||-.
T Consensus 542 lDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RME-vIelsGYv~eEKv~IA~~yLip 598 (906)
T KOG2004|consen 542 LDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RME-VIELSGYVAEEKVKIAERYLIP 598 (906)
T ss_pred hhhccccccchhheEEEEeccccccCChhhhh--hhh-eeeccCccHHHHHHHHHHhhhh
Confidence 5655433 12358999999999999999999 995 5899999999999999999965
No 71
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=2.2e-13 Score=146.11 Aligned_cols=161 Identities=16% Similarity=0.247 Sum_probs=114.9
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD------------ 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~------------ 253 (419)
.+|.+|++++|.+.+++.|...+. .. ..+..|||+|||||||||+++++|+.++..
T Consensus 10 yRP~tFddIIGQe~Iv~~LknaI~----~~--------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~ 77 (944)
T PRK14949 10 WRPATFEQMVGQSHVLHALTNALT----QQ--------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCS 77 (944)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHH----hC--------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCch
Confidence 468999999999998887654432 11 235569999999999999999999998653
Q ss_pred ------------EEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 254 ------------VYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 254 ------------v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
++.++..+-.+-..+|.+.... ....|++|||+|.+.
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------------------- 132 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------------------- 132 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC-------------------------
Confidence 1222222112234456655332 235699999999773
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
...+..||..|+.. .+..++|++|+.+.+|.+.|+. |+ .++.|..++.++....++..+..+
T Consensus 133 -----------~eAqNALLKtLEEP----P~~vrFILaTTe~~kLl~TIlS--RC-q~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 133 -----------RSSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTVLS--RC-LQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred -----------HHHHHHHHHHHhcc----CCCeEEEEECCCchhchHHHHH--hh-eEEeCCCCCHHHHHHHHHHHHHHc
Confidence 23445677777764 3456777888888999999998 76 779999999999999999888765
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+....+
T Consensus 195 gI~~ed 200 (944)
T PRK14949 195 QLPFEA 200 (944)
T ss_pred CCCCCH
Confidence 544433
No 72
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=3.6e-13 Score=135.25 Aligned_cols=163 Identities=15% Similarity=0.287 Sum_probs=115.7
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC------------c
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------D 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------~ 253 (419)
.+|.+|++++|.+.+++.+...+.. . ..+.+||||||||+|||++++++|+.+.. +
T Consensus 11 ~rP~~~~~iig~~~~~~~l~~~i~~----~--------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~ 78 (367)
T PRK14970 11 YRPQTFDDVVGQSHITNTLLNAIEN----N--------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFN 78 (367)
T ss_pred HCCCcHHhcCCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcc
Confidence 4789999999999888777665532 1 23567999999999999999999998743 2
Q ss_pred EEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 040638 254 VYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERI 327 (419)
Q Consensus 254 v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (419)
+++++.....+...++.++... ..+.|++|||+|.+..
T Consensus 79 ~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------------------------------ 122 (367)
T PRK14970 79 IFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------------------------------ 122 (367)
T ss_pred eEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------------------------------
Confidence 3333322222335667766543 2356999999986532
Q ss_pred HHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH
Q 040638 328 LETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV 403 (419)
Q Consensus 328 ~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i 403 (419)
..+..|+..++.. ....++|++|+.+..+.+++.+ |+ ..++++.++.++...++...+..++..+.++.
T Consensus 123 ~~~~~ll~~le~~----~~~~~~Il~~~~~~kl~~~l~s--r~-~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~a 191 (367)
T PRK14970 123 AAFNAFLKTLEEP----PAHAIFILATTEKHKIIPTILS--RC-QIFDFKRITIKDIKEHLAGIAVKEGIKFEDDA 191 (367)
T ss_pred HHHHHHHHHHhCC----CCceEEEEEeCCcccCCHHHHh--cc-eeEecCCccHHHHHHHHHHHHHHcCCCCCHHH
Confidence 1234566666653 2346788888889999999987 55 45899999999999888887776665554443
No 73
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.51 E-value=2.7e-13 Score=135.31 Aligned_cols=169 Identities=17% Similarity=0.301 Sum_probs=119.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-------------- 251 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------------- 251 (419)
..|.+|++++|.+++++.+...+.. ...+..||||||||+|||++++++|..+.
T Consensus 8 ~rp~~~~~iig~~~~~~~l~~~~~~------------~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~ 75 (355)
T TIGR02397 8 YRPQTFEDVIGQEHIVQTLKNAIKN------------GRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECE 75 (355)
T ss_pred hCCCcHhhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 4688999999999998888765532 12355799999999999999999998874
Q ss_pred ----------CcEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 252 ----------FDVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 252 ----------~~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
.++..++.....+-..+++++.... .+.|++|||+|.+..
T Consensus 76 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------------------ 131 (355)
T TIGR02397 76 SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------------------ 131 (355)
T ss_pred HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------------------
Confidence 2344444332223334666665432 346999999986632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. ....++|++||+++.+.+++.+ |+ ..++++.|+.++...++..++...
T Consensus 132 ------------~~~~~Ll~~le~~----~~~~~lIl~~~~~~~l~~~l~s--r~-~~~~~~~~~~~~l~~~l~~~~~~~ 192 (355)
T TIGR02397 132 ------------SAFNALLKTLEEP----PEHVVFILATTEPHKIPATILS--RC-QRFDFKRIPLEDIVERLKKILDKE 192 (355)
T ss_pred ------------HHHHHHHHHHhCC----ccceeEEEEeCCHHHHHHHHHh--he-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 1233466666654 3457788889999999999988 76 578999999999999999988776
Q ss_pred CCCChHHH-HHHHhc
Q 040638 396 EHPLFSEV-EELIEQ 409 (419)
Q Consensus 396 ~~~l~~~i-~~l~~~ 409 (419)
+..+.++. ..+++.
T Consensus 193 g~~i~~~a~~~l~~~ 207 (355)
T TIGR02397 193 GIKIEDEALELIARA 207 (355)
T ss_pred CCCCCHHHHHHHHHH
Confidence 65555443 333443
No 74
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=3e-13 Score=142.70 Aligned_cols=160 Identities=16% Similarity=0.254 Sum_probs=117.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+.. . ..+..|||+||+||||||+++++|+.++.
T Consensus 10 yRP~~f~divGQe~vv~~L~~~l~~----~--------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (647)
T PRK07994 10 WRPQTFAEVVGQEHVLTALANALDL----G--------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECD 77 (647)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCH
Confidence 3689999999999998877654432 1 23456999999999999999999999865
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+-.+-..+|++.... ...-|++|||+|.+..
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------------------ 133 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------------------ 133 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------------------
Confidence 34444433212334566665443 2356999999997732
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....||..|+.. .+..++|++|+.+.+|.+.+++ |+ .+++|..++.++....++..+..+
T Consensus 134 ------------~a~NALLKtLEEP----p~~v~FIL~Tt~~~kLl~TI~S--RC-~~~~f~~Ls~~ei~~~L~~il~~e 194 (647)
T PRK07994 134 ------------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRQQLEHILQAE 194 (647)
T ss_pred ------------HHHHHHHHHHHcC----CCCeEEEEecCCccccchHHHh--hh-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 2345577777664 3457788888889999999998 85 889999999999999999888655
Q ss_pred CCCCh
Q 040638 396 EHPLF 400 (419)
Q Consensus 396 ~~~l~ 400 (419)
+....
T Consensus 195 ~i~~e 199 (647)
T PRK07994 195 QIPFE 199 (647)
T ss_pred CCCCC
Confidence 44433
No 75
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=2.4e-13 Score=141.14 Aligned_cols=161 Identities=14% Similarity=0.241 Sum_probs=118.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+..- ..+..|||+|||||||||+|+++|+.++.
T Consensus 10 yRP~~f~divGq~~v~~~L~~~~~~~------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 77 (509)
T PRK14958 10 WRPRCFQEVIGQAPVVRALSNALDQQ------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCE 77 (509)
T ss_pred HCCCCHHHhcCCHHHHHHHHHHHHhC------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCH
Confidence 46999999999999988877655321 23456999999999999999999998854
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+-.+-..+|+++.... +..|++|||+|.+..
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------------------ 133 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------------------ 133 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------------------
Confidence 255565544334456777665432 346999999997642
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. .+..++|++|+.+.++.+.+++ |+ ..+++..++.++....++..+..+
T Consensus 134 ------------~a~naLLk~LEep----p~~~~fIlattd~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~l~~il~~e 194 (509)
T PRK14958 134 ------------HSFNALLKTLEEP----PSHVKFILATTDHHKLPVTVLS--RC-LQFHLAQLPPLQIAAHCQHLLKEE 194 (509)
T ss_pred ------------HHHHHHHHHHhcc----CCCeEEEEEECChHhchHHHHH--Hh-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 1234567766665 2457788888889999999988 76 668899999999888888888766
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+....+
T Consensus 195 gi~~~~ 200 (509)
T PRK14958 195 NVEFEN 200 (509)
T ss_pred CCCCCH
Confidence 655443
No 76
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.50 E-value=2.4e-13 Score=143.11 Aligned_cols=162 Identities=17% Similarity=0.263 Sum_probs=118.8
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++|+|.+.+++.|...+.. ...+.+|||+||+|||||++++++|+.++.
T Consensus 10 YRP~tFddIIGQe~vv~~L~~ai~~------------~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~ 77 (709)
T PRK08691 10 WRPKTFADLVGQEHVVKALQNALDE------------GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQ 77 (709)
T ss_pred hCCCCHHHHcCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccH
Confidence 4689999999999999887665542 123567999999999999999999998753
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+-.+-..+++++... ....|++|||+|.+..
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------------------ 133 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------------------ 133 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------------------
Confidence 23344433323345677776543 2457999999986521
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....||..|+.. .+..++|++||.+.++.+.++. |+ .++.|..++.++....++..+..+
T Consensus 134 ------------~A~NALLKtLEEP----p~~v~fILaTtd~~kL~~TIrS--RC-~~f~f~~Ls~eeI~~~L~~Il~kE 194 (709)
T PRK08691 134 ------------SAFNAMLKTLEEP----PEHVKFILATTDPHKVPVTVLS--RC-LQFVLRNMTAQQVADHLAHVLDSE 194 (709)
T ss_pred ------------HHHHHHHHHHHhC----CCCcEEEEEeCCccccchHHHH--HH-hhhhcCCCCHHHHHHHHHHHHHHc
Confidence 1234577777654 2446788899999999999886 87 778889999999999999988877
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+....++
T Consensus 195 gi~id~e 201 (709)
T PRK08691 195 KIAYEPP 201 (709)
T ss_pred CCCcCHH
Confidence 6555443
No 77
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=5.4e-13 Score=134.29 Aligned_cols=156 Identities=18% Similarity=0.216 Sum_probs=111.9
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc---------------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD--------------- 253 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~--------------- 253 (419)
+.|++|+|++.+++.+...+..... .+...+.+.+.+|||+||||+|||++++++|+.+...
T Consensus 2 ~~f~~IiGq~~~~~~L~~~i~~~~~---~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~ 78 (394)
T PRK07940 2 SVWDDLVGQEAVVAELRAAARAARA---DVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRT 78 (394)
T ss_pred ChhhhccChHHHHHHHHHHHHhccc---cccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Confidence 3689999999999998887765443 3444566678889999999999999999999877432
Q ss_pred --------EEEEEeccc-CChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHH
Q 040638 254 --------VYDLELSSV-EGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIR 318 (419)
Q Consensus 254 --------v~~l~l~~~-~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (419)
+..+..... -.-..++.++.... ...|++|||+|.+..
T Consensus 79 ~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------------------------- 131 (394)
T PRK07940 79 VLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------------------------- 131 (394)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH---------------------------
Confidence 333322211 12345677665432 346999999997732
Q ss_pred HHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 319 NLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 319 ~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
...+.||..|+.. ....++|++|+.++.|.|++++ |+ ..+.|+.|+.++....+..
T Consensus 132 ---------~aanaLLk~LEep----~~~~~fIL~a~~~~~llpTIrS--Rc-~~i~f~~~~~~~i~~~L~~ 187 (394)
T PRK07940 132 ---------RAANALLKAVEEP----PPRTVWLLCAPSPEDVLPTIRS--RC-RHVALRTPSVEAVAEVLVR 187 (394)
T ss_pred ---------HHHHHHHHHhhcC----CCCCeEEEEECChHHChHHHHh--hC-eEEECCCCCHHHHHHHHHH
Confidence 1224477777654 2346677777779999999998 77 7899999999998877764
No 78
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=3.9e-13 Score=146.03 Aligned_cols=162 Identities=18% Similarity=0.237 Sum_probs=116.6
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC------------
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------ 252 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------ 252 (419)
..+|.+|++|+|.+.+++.|...+.. . .....|||+||+||||||+++++|+.|+.
T Consensus 8 KyRP~~f~eiiGqe~v~~~L~~~i~~----~--------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C 75 (824)
T PRK07764 8 RYRPATFAEVIGQEHVTEPLSTALDS----G--------RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC 75 (824)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHHh----C--------CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc
Confidence 35799999999999988877655532 1 13456999999999999999999999853
Q ss_pred --------------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchh
Q 040638 253 --------------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRD 312 (419)
Q Consensus 253 --------------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (419)
+++.++..+..+-..+|++.... ...-|+||||+|.+..
T Consensus 76 ~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------------------- 134 (824)
T PRK07764 76 DSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------------------- 134 (824)
T ss_pred HHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCH---------------------
Confidence 33444332222234455543221 3457999999997732
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 313 LMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 313 ~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
.....||+.|+.. ....++||+|+.+++|-++|+. |+ .+++|..++.++...+++..+
T Consensus 135 ---------------~a~NaLLK~LEEp----P~~~~fIl~tt~~~kLl~TIrS--Rc-~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 135 ---------------QGFNALLKIVEEP----PEHLKFIFATTEPDKVIGTIRS--RT-HHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred ---------------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEeeCCCHHHHHHHHHHHH
Confidence 2334577877776 3457888888999999999988 65 679999999999999999988
Q ss_pred CCCCCCChH
Q 040638 393 GITEHPLFS 401 (419)
Q Consensus 393 ~~~~~~l~~ 401 (419)
..++..+.+
T Consensus 193 ~~EGv~id~ 201 (824)
T PRK07764 193 AQEGVPVEP 201 (824)
T ss_pred HHcCCCCCH
Confidence 665544433
No 79
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.49 E-value=5.1e-13 Score=140.47 Aligned_cols=162 Identities=17% Similarity=0.264 Sum_probs=119.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-------------- 251 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------------- 251 (419)
-.|.+|++++|.+.+++.+...+.. ...+..||||||+|||||++++++|..++
T Consensus 10 ~rP~~f~~viGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~ 77 (559)
T PRK05563 10 WRPQTFEDVVGQEHITKTLKNAIKQ------------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECE 77 (559)
T ss_pred hCCCcHHhccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccH
Confidence 3689999999999988877665543 12356799999999999999999999874
Q ss_pred ----------CcEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 252 ----------FDVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 252 ----------~~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
.+++.++..+-.+-..++.+..... ..-|++|||+|.+..
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------------------ 133 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------------------ 133 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------------------
Confidence 3556665543334455666665432 356999999997632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. ....++|++|+.++.|.+++++ |+ ..++|+.++.++....++..+..+
T Consensus 134 ------------~a~naLLKtLEep----p~~~ifIlatt~~~ki~~tI~S--Rc-~~~~f~~~~~~ei~~~L~~i~~~e 194 (559)
T PRK05563 134 ------------GAFNALLKTLEEP----PAHVIFILATTEPHKIPATILS--RC-QRFDFKRISVEDIVERLKYILDKE 194 (559)
T ss_pred ------------HHHHHHHHHhcCC----CCCeEEEEEeCChhhCcHHHHh--Hh-eEEecCCCCHHHHHHHHHHHHHHc
Confidence 1233566666654 3457888888889999999998 76 468899999999999999888766
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+..+.++
T Consensus 195 gi~i~~~ 201 (559)
T PRK05563 195 GIEYEDE 201 (559)
T ss_pred CCCCCHH
Confidence 6555443
No 80
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.49 E-value=3.1e-13 Score=146.73 Aligned_cols=161 Identities=21% Similarity=0.191 Sum_probs=114.7
Q ss_pred Cccc-cccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHH
Q 040638 190 TFDT-LAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL 268 (419)
Q Consensus 190 ~f~~-l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l 268 (419)
.++. +.|.+++|++|++.+....... ......++|+||||||||++++++|+.++.+++.++++.+.+...+
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~-------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i 391 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVN-------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEI 391 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcc-------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHh
Confidence 3444 7899999999998876543221 1122348999999999999999999999999999998877544433
Q ss_pred H---------------HHHHHcc-CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 040638 269 R---------------KVLIATE-NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332 (419)
Q Consensus 269 ~---------------~l~~~~~-~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 332 (419)
+ +.+.... ...|++|||||.+....+ ....+.
T Consensus 392 ~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~--------------------------------g~~~~a 439 (784)
T PRK10787 392 RGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMR--------------------------------GDPASA 439 (784)
T ss_pred ccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccC--------------------------------CCHHHH
Confidence 2 2222222 356899999997754100 012234
Q ss_pred HHHHhcC---------ccc--CCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 333 LLNFTNG---------LWS--SSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 333 Ll~~ldg---------~~s--~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
|+..+|. +.. ..-+++++|+|+|.. .|+|||+. ||. .|.++.++.++..+|+++||.
T Consensus 440 Llevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~--R~~-ii~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 440 LLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLD--RME-VIRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred HHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhc--cee-eeecCCCCHHHHHHHHHHhhh
Confidence 5565553 110 012468999999987 49999999 996 689999999999999999995
No 81
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=6e-13 Score=139.58 Aligned_cols=163 Identities=20% Similarity=0.278 Sum_probs=117.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|++.+++.|...+.. . ..+..|||+||+||||||+++++|+.++.
T Consensus 7 yRP~~f~eivGq~~i~~~L~~~i~~----~--------r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~ 74 (584)
T PRK14952 7 YRPATFAEVVGQEHVTEPLSSALDA----G--------RINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCE 74 (584)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccH
Confidence 4799999999999888877655432 1 23456999999999999999999998752
Q ss_pred -------------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhH
Q 040638 253 -------------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDL 313 (419)
Q Consensus 253 -------------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (419)
+++.++..+..+-..++++.... ...-|++|||+|.+..
T Consensus 75 ~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~---------------------- 132 (584)
T PRK14952 75 SCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT---------------------- 132 (584)
T ss_pred HHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH----------------------
Confidence 34444443322334555543222 2456999999997632
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 314 MLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 314 ~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
.....||..|+.. .+..++|++|+.+++|.++|+. |+ .+++|..++.++....+..++.
T Consensus 133 --------------~A~NALLK~LEEp----p~~~~fIL~tte~~kll~TI~S--Rc-~~~~F~~l~~~~i~~~L~~i~~ 191 (584)
T PRK14952 133 --------------AGFNALLKIVEEP----PEHLIFIFATTEPEKVLPTIRS--RT-HHYPFRLLPPRTMRALIARICE 191 (584)
T ss_pred --------------HHHHHHHHHHhcC----CCCeEEEEEeCChHhhHHHHHH--hc-eEEEeeCCCHHHHHHHHHHHHH
Confidence 1334567777765 3458888888999999999998 74 7899999999999999999888
Q ss_pred CCCCCChHHH
Q 040638 394 ITEHPLFSEV 403 (419)
Q Consensus 394 ~~~~~l~~~i 403 (419)
.++....++.
T Consensus 192 ~egi~i~~~a 201 (584)
T PRK14952 192 QEGVVVDDAV 201 (584)
T ss_pred HcCCCCCHHH
Confidence 7665555443
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.48 E-value=4.9e-13 Score=140.78 Aligned_cols=162 Identities=15% Similarity=0.244 Sum_probs=115.7
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.|...+. .. ..+..|||+||+||||||+++++|+.++.
T Consensus 10 yRP~~f~dviGQe~vv~~L~~~l~----~~--------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~p 77 (618)
T PRK14951 10 YRPRSFSEMVGQEHVVQALTNALT----QQ--------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATP 77 (618)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH----cC--------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCC
Confidence 468999999999888876655443 21 22456999999999999999999998864
Q ss_pred ----------------cEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcc
Q 040638 253 ----------------DVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPR 310 (419)
Q Consensus 253 ----------------~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~ 310 (419)
+++.++..+-.+-..+++++.... ..-|++|||+|.+..
T Consensus 78 Cg~C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~------------------- 138 (618)
T PRK14951 78 CGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN------------------- 138 (618)
T ss_pred CCccHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH-------------------
Confidence 233443322223346677665432 245999999997632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 311 RDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
...+.||..++.. .+..++|++|+.+.++.+.++. |+ .+++|..++.++....++.
T Consensus 139 -----------------~a~NaLLKtLEEP----P~~~~fIL~Ttd~~kil~TIlS--Rc-~~~~f~~Ls~eei~~~L~~ 194 (618)
T PRK14951 139 -----------------TAFNAMLKTLEEP----PEYLKFVLATTDPQKVPVTVLS--RC-LQFNLRPMAPETVLEHLTQ 194 (618)
T ss_pred -----------------HHHHHHHHhcccC----CCCeEEEEEECCchhhhHHHHH--hc-eeeecCCCCHHHHHHHHHH
Confidence 1233466666554 3457788888889999999988 76 7799999999999999998
Q ss_pred hhCCCCCCChHH
Q 040638 391 YLGITEHPLFSE 402 (419)
Q Consensus 391 ~l~~~~~~l~~~ 402 (419)
.+..++....++
T Consensus 195 i~~~egi~ie~~ 206 (618)
T PRK14951 195 VLAAENVPAEPQ 206 (618)
T ss_pred HHHHcCCCCCHH
Confidence 887766555443
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.48 E-value=2e-13 Score=128.94 Aligned_cols=169 Identities=20% Similarity=0.242 Sum_probs=115.1
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-cEE--
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-DVY-- 255 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-~v~-- 255 (419)
.|.+ .-.|.+|++++|++.+++.+...+.. -. -..|||||||||||||.|.|.|..+.. +..
T Consensus 25 swte--KYrPkt~de~~gQe~vV~~L~~a~~~-~~------------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~ 89 (346)
T KOG0989|consen 25 SWTE--KYRPKTFDELAGQEHVVQVLKNALLR-RI------------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPC 89 (346)
T ss_pred chHH--HhCCCcHHhhcchHHHHHHHHHHHhh-cC------------CceEEeeCCCCCcHhHHHHHHHHHhcCcccccc
Confidence 4654 46799999999999999888776644 11 124999999999999999999999965 222
Q ss_pred ---EEEecccCChHHH-------HHHHHHc--------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHH
Q 040638 256 ---DLELSSVEGNKHL-------RKVLIAT--------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQI 317 (419)
Q Consensus 256 ---~l~l~~~~~~~~l-------~~l~~~~--------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (419)
+++.+.-.+-+-. .++.... +..-|++|||.|.+.
T Consensus 90 rvl~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------------------------- 142 (346)
T KOG0989|consen 90 RVLELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------------------------- 142 (346)
T ss_pred chhhhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhh---------------------------
Confidence 2222222111111 1111111 112699999999774
Q ss_pred HHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCC
Q 040638 318 RNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEH 397 (419)
Q Consensus 318 ~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~ 397 (419)
......|...||... ....+|+-||++++|.+.+.. |+ .+..|+....+....-++.....++.
T Consensus 143 ---------sdaq~aLrr~mE~~s----~~trFiLIcnylsrii~pi~S--RC-~KfrFk~L~d~~iv~rL~~Ia~~E~v 206 (346)
T KOG0989|consen 143 ---------SDAQAALRRTMEDFS----RTTRFILICNYLSRIIRPLVS--RC-QKFRFKKLKDEDIVDRLEKIASKEGV 206 (346)
T ss_pred ---------HHHHHHHHHHHhccc----cceEEEEEcCChhhCChHHHh--hH-HHhcCCCcchHHHHHHHHHHHHHhCC
Confidence 234556788888852 347888999999999999998 87 55778877777766777776766666
Q ss_pred CChHHHHH
Q 040638 398 PLFSEVEE 405 (419)
Q Consensus 398 ~l~~~i~~ 405 (419)
...++.-+
T Consensus 207 ~~d~~al~ 214 (346)
T KOG0989|consen 207 DIDDDALK 214 (346)
T ss_pred CCCHHHHH
Confidence 66554433
No 84
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=4.9e-13 Score=138.90 Aligned_cols=166 Identities=16% Similarity=0.196 Sum_probs=118.4
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC------ChHHHHHHHHHcc--CCeEEEEecCcccccccc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE------GNKHLRKVLIATE--NKSILVVEDIDCCTELQD 294 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~------~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~ 294 (419)
+.....+||+|+||||||++++++|.+++.+++.++|.++. .+..+...|..+. +|+||++-++|.+.- +
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~i--d 505 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGI--D 505 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeee--c
Confidence 33444599999999999999999999999999999998872 4567777887664 699999999998752 1
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEE
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHI 374 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I 374 (419)
+.+ +++ ..-...+..++. .|-.- .+....|+|+||+..+.|++.+.+ .|-..|
T Consensus 506 ~dg----------ged-------------~rl~~~i~~~ls-~e~~~-~~~~~~ivv~t~~s~~~lp~~i~~--~f~~ei 558 (953)
T KOG0736|consen 506 QDG----------GED-------------ARLLKVIRHLLS-NEDFK-FSCPPVIVVATTSSIEDLPADIQS--LFLHEI 558 (953)
T ss_pred CCC----------chh-------------HHHHHHHHHHHh-ccccc-CCCCceEEEEeccccccCCHHHHH--hhhhhc
Confidence 111 000 011112222222 23332 234679999999999999999998 888999
Q ss_pred EeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCcccc
Q 040638 375 HMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEV 417 (419)
Q Consensus 375 ~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v 417 (419)
.++.|+.++|.++++.|+......-....+.++..+ ++|++|+
T Consensus 559 ~~~~lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L 602 (953)
T KOG0736|consen 559 EVPALSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDL 602 (953)
T ss_pred cCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHH
Confidence 999999999999999999864322222334455443 5777664
No 85
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.47 E-value=9.6e-13 Score=126.07 Aligned_cols=129 Identities=21% Similarity=0.199 Sum_probs=91.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHH-------------H--------------------HHHH
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL-------------R--------------------KVLI 273 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l-------------~--------------------~l~~ 273 (419)
+.+||+||||||||++|+++|..++.++..++++.-.....+ . .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 459999999999999999999999999998887653221111 0 0122
Q ss_pred HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc-cCC--------
Q 040638 274 ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW-SSS-------- 344 (419)
Q Consensus 274 ~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~-s~~-------- 344 (419)
....+.+++|||||.+-. .+.+.|+..++.-. .-.
T Consensus 102 A~~~g~~lllDEi~r~~~------------------------------------~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP------------------------------------ETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred HHHcCCEEEEcchhhCCH------------------------------------HHHHHHHHHhcCCeEEccCCCCCCce
Confidence 234568999999996522 23444555554321 100
Q ss_pred ---CCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 345 ---GDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 345 ---g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.....+|+|+|... .+++||++ || ..+.+++|+.++-.+|++.+.+.
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~--R~-~~i~i~~P~~~~e~~Il~~~~~~ 200 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLD--RL-ITIFMDYPDIDTETAILRAKTDV 200 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHh--hc-EEEECCCCCHHHHHHHHHHhhCC
Confidence 11356889999763 57899999 98 78999999999999999988654
No 86
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=6.4e-13 Score=131.49 Aligned_cols=162 Identities=12% Similarity=0.148 Sum_probs=106.5
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-----cEEEEEe
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-----DVYDLEL 259 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-----~v~~l~l 259 (419)
-..|.+|++++|.+++++.+...+. .+ . ...++||||||||||++++++|+++.. ++..+++
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~----~~-------~--~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~ 74 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD----SP-------N--LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNV 74 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh----CC-------C--CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEech
Confidence 3479999999999888777655442 11 1 125999999999999999999998843 3455555
Q ss_pred cccCC--------------------------hHHHHHHHHHc-------cCCeEEEEecCcccccccchhhhccCCCCCC
Q 040638 260 SSVEG--------------------------NKHLRKVLIAT-------ENKSILVVEDIDCCTELQDRSAQARTASPYW 306 (419)
Q Consensus 260 ~~~~~--------------------------~~~l~~l~~~~-------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~ 306 (419)
..+.. ...++.+.... ..+.+|+|||+|.+..
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------------- 139 (337)
T PRK12402 75 ADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------------- 139 (337)
T ss_pred hhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH---------------
Confidence 43210 11122222111 2356999999996532
Q ss_pred CCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHH
Q 040638 307 HSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKI 386 (419)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~ 386 (419)
.....|...++... ....+|+||+.+..+.++|.+ |+ ..+++..++.++...
T Consensus 140 ---------------------~~~~~L~~~le~~~----~~~~~Il~~~~~~~~~~~L~s--r~-~~v~~~~~~~~~~~~ 191 (337)
T PRK12402 140 ---------------------DAQQALRRIMEQYS----RTCRFIIATRQPSKLIPPIRS--RC-LPLFFRAPTDDELVD 191 (337)
T ss_pred ---------------------HHHHHHHHHHHhcc----CCCeEEEEeCChhhCchhhcC--Cc-eEEEecCCCHHHHHH
Confidence 01122444454432 224566777777788888887 65 568999999999999
Q ss_pred HHHHhhCCCCCCChHH
Q 040638 387 LASNYLGITEHPLFSE 402 (419)
Q Consensus 387 l~~~~l~~~~~~l~~~ 402 (419)
+++..+...+..+.++
T Consensus 192 ~l~~~~~~~~~~~~~~ 207 (337)
T PRK12402 192 VLESIAEAEGVDYDDD 207 (337)
T ss_pred HHHHHHHHcCCCCCHH
Confidence 9999887766555444
No 87
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=5.1e-13 Score=139.56 Aligned_cols=161 Identities=15% Similarity=0.254 Sum_probs=116.3
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+.. . ..+..|||+||||+||||+++++|..++.
T Consensus 10 ~rP~~f~divGq~~v~~~L~~~i~~----~--------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~ 77 (527)
T PRK14969 10 WRPKSFSELVGQEHVVRALTNALEQ----Q--------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCS 77 (527)
T ss_pred hCCCcHHHhcCcHHHHHHHHHHHHc----C--------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCH
Confidence 3689999999999998877655432 1 23456999999999999999999999854
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++...-..-..+++++... ....|++|||+|.+..
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------------------ 133 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------------------ 133 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------------------
Confidence 34444433222345567666543 2356999999996632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....||..++.. .+..++|++|+.+..+.+.+++ |+ .+++|..++.++....+...+..+
T Consensus 134 ------------~a~naLLK~LEep----p~~~~fIL~t~d~~kil~tI~S--Rc-~~~~f~~l~~~~i~~~L~~il~~e 194 (527)
T PRK14969 134 ------------SAFNAMLKTLEEP----PEHVKFILATTDPQKIPVTVLS--RC-LQFNLKQMPPPLIVSHLQHILEQE 194 (527)
T ss_pred ------------HHHHHHHHHHhCC----CCCEEEEEEeCChhhCchhHHH--HH-HHHhcCCCCHHHHHHHHHHHHHHc
Confidence 1234577777664 3457788888888899888887 76 779999999999998888888665
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+....+
T Consensus 195 gi~~~~ 200 (527)
T PRK14969 195 NIPFDA 200 (527)
T ss_pred CCCCCH
Confidence 544433
No 88
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=9.4e-13 Score=136.99 Aligned_cols=161 Identities=16% Similarity=0.249 Sum_probs=114.3
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+.. . ..+..|||+|||||||||+++++|+.+..
T Consensus 10 yRP~~f~diiGq~~~v~~L~~~i~~----~--------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~ 77 (546)
T PRK14957 10 YRPQSFAEVAGQQHALNSLVHALET----Q--------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCE 77 (546)
T ss_pred HCcCcHHHhcCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 3689999999999998877654432 1 22456999999999999999999998853
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++...-.+-..++.++... ...-|++|||+|.+..
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------------------ 133 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------------------ 133 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------------------
Confidence 44555442222334455554332 2457999999987632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....||..++.. .+..++|++|+.+..+.++++. |+ ..++|..++.++....++..+..+
T Consensus 134 ------------~a~naLLK~LEep----p~~v~fIL~Ttd~~kil~tI~S--Rc-~~~~f~~Ls~~eI~~~L~~il~~e 194 (546)
T PRK14957 134 ------------QSFNALLKTLEEP----PEYVKFILATTDYHKIPVTILS--RC-IQLHLKHISQADIKDQLKIILAKE 194 (546)
T ss_pred ------------HHHHHHHHHHhcC----CCCceEEEEECChhhhhhhHHH--he-eeEEeCCCCHHHHHHHHHHHHHHc
Confidence 2334577777765 2446777777778889888887 76 779999999999988888877665
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+....+
T Consensus 195 gi~~e~ 200 (546)
T PRK14957 195 NINSDE 200 (546)
T ss_pred CCCCCH
Confidence 544433
No 89
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.46 E-value=1.8e-12 Score=118.57 Aligned_cols=180 Identities=19% Similarity=0.203 Sum_probs=140.2
Q ss_pred CCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcE
Q 040638 178 DTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDV 254 (419)
Q Consensus 178 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v 254 (419)
+...+++-.+|..+.+|+|.+.+|+.+++....|..+. +...+||+|.-|||||||++|+-+++ +..+
T Consensus 46 ~~L~pv~~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~---------pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrL 116 (287)
T COG2607 46 GYLEPVPDPDPIDLADLVGVDRQKEALVRNTEQFAEGL---------PANNVLLWGARGTGKSSLVKALLNEYADEGLRL 116 (287)
T ss_pred CcccCCCCCCCcCHHHHhCchHHHHHHHHHHHHHHcCC---------cccceEEecCCCCChHHHHHHHHHHHHhcCCeE
Confidence 34566666777899999999999999999999998653 24569999999999999999999988 4567
Q ss_pred EEEEecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHH
Q 040638 255 YDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334 (419)
Q Consensus 255 ~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll 334 (419)
++++-..+.+-..|..++.....+-|||+||+- ++- + ......|-
T Consensus 117 VEV~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~------------------g---------------d~~yK~LK 161 (287)
T COG2607 117 VEVDKEDLATLPDLVELLRARPEKFILFCDDLS--FEE------------------G---------------DDAYKALK 161 (287)
T ss_pred EEEcHHHHhhHHHHHHHHhcCCceEEEEecCCC--CCC------------------C---------------chHHHHHH
Confidence 777666666666677777888899999999984 220 0 11233467
Q ss_pred HHhcCcccCCCCCEEEEEecCCCCCCCcccc--------------------CCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 335 NFTNGLWSSSGDERIIVFTTNHKDRLDPALL--------------------RPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 335 ~~ldg~~s~~g~~~iiV~tTN~~~~LdpALl--------------------rpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
..+||-.+....++++.+|+|+..-|+.-.. =.-||...+.|..|+.++..+|+.+|...
T Consensus 162 s~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 162 SALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 7889988887788999999998765542221 12399999999999999999999999987
Q ss_pred CCCCChH
Q 040638 395 TEHPLFS 401 (419)
Q Consensus 395 ~~~~l~~ 401 (419)
......+
T Consensus 242 ~~l~~~~ 248 (287)
T COG2607 242 FGLDISD 248 (287)
T ss_pred cCCCCCH
Confidence 6666643
No 90
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=6.8e-13 Score=138.33 Aligned_cols=161 Identities=14% Similarity=0.262 Sum_probs=115.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-------------- 251 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------------- 251 (419)
-+|.+|++++|.+.+++.+...+.. -..+++|||+||||+|||++|+++|+.+.
T Consensus 10 yRP~~F~dIIGQe~iv~~L~~aI~~------------~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~ 77 (605)
T PRK05896 10 YRPHNFKQIIGQELIKKILVNAILN------------NKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCS 77 (605)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4799999999999988877654421 12246799999999999999999999874
Q ss_pred ----------CcEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 252 ----------FDVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 252 ----------~~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
.+++.++..+..+-..++.+.... ....|++|||+|.+..
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------------------ 133 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------------------ 133 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------------------
Confidence 244455443322334566665432 2356999999997632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. .+..++|++|+.+..|.+++++ |+ ..++|+.++.++....+...+..+
T Consensus 134 ------------~A~NaLLKtLEEP----p~~tvfIL~Tt~~~KLl~TI~S--Rc-q~ieF~~Ls~~eL~~~L~~il~ke 194 (605)
T PRK05896 134 ------------SAWNALLKTLEEP----PKHVVFIFATTEFQKIPLTIIS--RC-QRYNFKKLNNSELQELLKSIAKKE 194 (605)
T ss_pred ------------HHHHHHHHHHHhC----CCcEEEEEECCChHhhhHHHHh--hh-hhcccCCCCHHHHHHHHHHHHHHc
Confidence 1223577777765 3457888888999999999998 76 468999999999998888877665
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+....+
T Consensus 195 gi~Is~ 200 (605)
T PRK05896 195 KIKIED 200 (605)
T ss_pred CCCCCH
Confidence 544433
No 91
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.46 E-value=9.1e-13 Score=139.94 Aligned_cols=159 Identities=18% Similarity=0.279 Sum_probs=114.9
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+..- ..+..||||||||+|||++|+++|..+..
T Consensus 12 yRP~~f~dIiGQe~~v~~L~~aI~~~------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C 79 (725)
T PRK07133 12 YRPKTFDDIVGQDHIVQTLKNIIKSN------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQEC 79 (725)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHH
Confidence 47999999999999888776655421 23567999999999999999999988743
Q ss_pred --------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHH
Q 040638 253 --------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIR 318 (419)
Q Consensus 253 --------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (419)
+++.++..+-.+-..++.+.... ....|++|||+|.+..
T Consensus 80 ~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------------------------- 132 (725)
T PRK07133 80 IENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------------------------- 132 (725)
T ss_pred HHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH---------------------------
Confidence 22233221111234466665443 2457999999997632
Q ss_pred HHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCC
Q 040638 319 NLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHP 398 (419)
Q Consensus 319 ~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~ 398 (419)
.....||..|+.. .+..++|++|+.++.|.+++++ |+ .+++|..++.++....+...+..++..
T Consensus 133 ---------~A~NALLKtLEEP----P~~tifILaTte~~KLl~TI~S--Rc-q~ieF~~L~~eeI~~~L~~il~kegI~ 196 (725)
T PRK07133 133 ---------SAFNALLKTLEEP----PKHVIFILATTEVHKIPLTILS--RV-QRFNFRRISEDEIVSRLEFILEKENIS 196 (725)
T ss_pred ---------HHHHHHHHHhhcC----CCceEEEEEcCChhhhhHHHHh--hc-eeEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 1344577777765 3457888888999999999998 77 579999999999998888877655444
Q ss_pred C
Q 040638 399 L 399 (419)
Q Consensus 399 l 399 (419)
.
T Consensus 197 i 197 (725)
T PRK07133 197 Y 197 (725)
T ss_pred C
Confidence 3
No 92
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=7.3e-13 Score=138.73 Aligned_cols=162 Identities=17% Similarity=0.249 Sum_probs=114.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
..|.+|++|+|.+.+++.|...+.. . ..+..|||+||||||||++++++|+.+..
T Consensus 10 yRP~sf~dIiGQe~v~~~L~~ai~~----~--------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~ 77 (624)
T PRK14959 10 YRPQTFAEVAGQETVKAILSRAAQE----N--------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCE 77 (624)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHc----C--------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccH
Confidence 4799999999999887776554431 1 12457999999999999999999999864
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++...-..-..++.+.... ....||+|||+|.+..
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~------------------------ 133 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR------------------------ 133 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH------------------------
Confidence 24445432211223444432221 2457999999997732
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. .+..++|++||.+..+.+.|++ |+ .+|+|+.++.++....++..+..+
T Consensus 134 ------------~a~naLLk~LEEP----~~~~ifILaTt~~~kll~TI~S--Rc-q~i~F~pLs~~eL~~~L~~il~~e 194 (624)
T PRK14959 134 ------------EAFNALLKTLEEP----PARVTFVLATTEPHKFPVTIVS--RC-QHFTFTRLSEAGLEAHLTKVLGRE 194 (624)
T ss_pred ------------HHHHHHHHHhhcc----CCCEEEEEecCChhhhhHHHHh--hh-hccccCCCCHHHHHHHHHHHHHHc
Confidence 1234567777664 2457888999999999999988 76 578999999999999988877766
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
...+.++
T Consensus 195 gi~id~e 201 (624)
T PRK14959 195 GVDYDPA 201 (624)
T ss_pred CCCCCHH
Confidence 5544444
No 93
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.45 E-value=6e-13 Score=139.33 Aligned_cols=170 Identities=19% Similarity=0.253 Sum_probs=111.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEE
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVY 255 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~ 255 (419)
.+|.+|++++|..+..+.+...+. . +.+..+||+||||||||++|+++++++ +.+++
T Consensus 59 ~rp~~f~~iiGqs~~i~~l~~al~----~---------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi 125 (531)
T TIGR02902 59 TRPKSFDEIIGQEEGIKALKAALC----G---------PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFV 125 (531)
T ss_pred hCcCCHHHeeCcHHHHHHHHHHHh----C---------CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEE
Confidence 478999999999888777754321 1 124569999999999999999998753 24677
Q ss_pred EEEecccC-ChHHHH-HHH--------------------------HHccCCeEEEEecCcccccccchhhhccCCCCCCC
Q 040638 256 DLELSSVE-GNKHLR-KVL--------------------------IATENKSILVVEDIDCCTELQDRSAQARTASPYWH 307 (419)
Q Consensus 256 ~l~l~~~~-~~~~l~-~l~--------------------------~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~ 307 (419)
.++++... ++..+. .++ ......++|+|||||.+...
T Consensus 126 ~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~--------------- 190 (531)
T TIGR02902 126 EIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV--------------- 190 (531)
T ss_pred EEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH---------------
Confidence 78775321 111110 000 11224589999999987431
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc--------cc-----------------CCCCCEEEEEecCCCCCCCc
Q 040638 308 SPRRDLMLQIRNLILFVERILETFGLLNFTNGL--------WS-----------------SSGDERIIVFTTNHKDRLDP 362 (419)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~--------~s-----------------~~g~~~iiV~tTN~~~~Ldp 362 (419)
....|+..++.- .+ .+.+-++|++|||.++.|+|
T Consensus 191 ---------------------~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~p 249 (531)
T TIGR02902 191 ---------------------QMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPP 249 (531)
T ss_pred ---------------------HHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCCh
Confidence 111222222110 00 01123677778899999999
Q ss_pred cccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 363 ALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 363 ALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
++++ |+ ..|.|+.++.++..+|+++.+......+.++.-+++
T Consensus 250 aLrs--R~-~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I 291 (531)
T TIGR02902 250 ALRS--RC-VEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI 291 (531)
T ss_pred HHhh--hh-heeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 9999 87 578999999999999999999876665555544443
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.44 E-value=5e-13 Score=124.78 Aligned_cols=171 Identities=16% Similarity=0.164 Sum_probs=106.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV 262 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~ 262 (419)
..+.+|+++.. +..+.+++.+...... ..++.++|+||||||||++++++++.+ +.+++.+++..+
T Consensus 9 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 9 PDDPTFDNFYA--GGNAELLAALRQLAAG---------KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCchhhcCcCc--CCcHHHHHHHHHHHhc---------CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 34457888873 2334444445444321 224569999999999999999999887 356777777655
Q ss_pred CChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Q 040638 263 EGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWS 342 (419)
Q Consensus 263 ~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s 342 (419)
.. ....++.......+|+|||+|.+... ......|...++....
T Consensus 78 ~~--~~~~~~~~~~~~~lLvIDdi~~l~~~----------------------------------~~~~~~L~~~l~~~~~ 121 (226)
T TIGR03420 78 AQ--ADPEVLEGLEQADLVCLDDVEAIAGQ----------------------------------PEWQEALFHLYNRVRE 121 (226)
T ss_pred HH--hHHHHHhhcccCCEEEEeChhhhcCC----------------------------------hHHHHHHHHHHHHHHH
Confidence 32 22344444455679999999976320 0001223334443322
Q ss_pred CCCCCEEEEEecC-CCCCCC---ccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh
Q 040638 343 SSGDERIIVFTTN-HKDRLD---PALLRPGRM--DVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE 408 (419)
Q Consensus 343 ~~g~~~iiV~tTN-~~~~Ld---pALlrpGR~--d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 408 (419)
. +. .+|+|++ .+..++ +.|.+ |+ ..+|.++.++.+++..+++.+.......+.++.-..+.
T Consensus 122 ~--~~-~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~ 188 (226)
T TIGR03420 122 A--GG-RLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLL 188 (226)
T ss_pred c--CC-eEEEECCCChHHCCcccHHHHH--HHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1 12 3455555 444432 67776 55 57899999999999999999876555556665444433
No 95
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.44 E-value=5.4e-13 Score=146.72 Aligned_cols=158 Identities=17% Similarity=0.223 Sum_probs=113.0
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|..++.++|.++..+.+++-|.. ..+...+|+||||||||++++++|..+ +..++.
T Consensus 173 r~~~l~~vigr~~ei~~~i~iL~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~ 239 (857)
T PRK10865 173 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 239 (857)
T ss_pred hcCCCCcCCCCHHHHHHHHHHHhc-------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEE
Confidence 366899999988766666554432 225579999999999999999999988 778888
Q ss_pred EEecccC--------ChHHHHHHHHHc---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 257 LELSSVE--------GNKHLRKVLIAT---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 257 l~l~~~~--------~~~~l~~l~~~~---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
++++.+. .+..++.+|... ..++||||||++.+.+.....+
T Consensus 240 l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~---------------------------- 291 (857)
T PRK10865 240 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG---------------------------- 291 (857)
T ss_pred EehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc----------------------------
Confidence 8887652 134577777653 4589999999999875321100
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
......+| .... ..++..+|+||+..+ .+|+||.| ||+ .|.++.|+.+++..|++.....
T Consensus 292 -~~d~~~~l---kp~l--~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~eP~~~~~~~iL~~l~~~ 356 (857)
T PRK10865 292 -AMDAGNML---KPAL--ARGELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAILRGLKER 356 (857)
T ss_pred -chhHHHHh---cchh--hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hCC-EEEeCCCCHHHHHHHHHHHhhh
Confidence 00111111 1111 235788999998877 48999999 997 5899999999999999876653
No 96
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.44 E-value=5.2e-13 Score=146.47 Aligned_cols=157 Identities=17% Similarity=0.213 Sum_probs=109.7
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|..++.++|.++..+.+++-+.. ..+.+.+|+||||||||++++.+|..+ +..++.
T Consensus 182 r~~~ld~~iGr~~ei~~~i~~l~r-------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~ 248 (852)
T TIGR03345 182 REGKIDPVLGRDDEIRQMIDILLR-------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLS 248 (852)
T ss_pred cCCCCCcccCCHHHHHHHHHHHhc-------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEE
Confidence 477899999988876666544322 225579999999999999999999876 356777
Q ss_pred EEecccC--------ChHHHHHHHHHc---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 257 LELSSVE--------GNKHLRKVLIAT---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 257 l~l~~~~--------~~~~l~~l~~~~---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
++++.+. -+..++.++... ..++|||||||+.+.........
T Consensus 249 l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~--------------------------- 301 (852)
T TIGR03345 249 LDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQ--------------------------- 301 (852)
T ss_pred eehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccc---------------------------
Confidence 7776542 125777787655 35799999999998763211100
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
...+ |.+.... ..++..+|+||+..+ .+||||.| ||. .|.++.|+.++..+|++.+..
T Consensus 302 --~d~~---n~Lkp~l--~~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf~-~i~v~eps~~~~~~iL~~~~~ 364 (852)
T TIGR03345 302 --GDAA---NLLKPAL--ARGELRTIAATTWAEYKKYFEKDPALTR--RFQ-VVKVEEPDEETAIRMLRGLAP 364 (852)
T ss_pred --ccHH---HHhhHHh--hCCCeEEEEecCHHHHhhhhhccHHHHH--hCe-EEEeCCCCHHHHHHHHHHHHH
Confidence 0000 1122221 135688888887643 48999999 995 799999999999999765554
No 97
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1e-12 Score=138.73 Aligned_cols=161 Identities=16% Similarity=0.231 Sum_probs=116.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
..|.+|++++|.+++++.+...+.. ...+..||||||+|+|||++++++|+.++.
T Consensus 10 ~RP~~f~~iiGq~~v~~~L~~~i~~------------~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~ 77 (576)
T PRK14965 10 YRPQTFSDLTGQEHVSRTLQNAIDT------------GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCP 77 (576)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccH
Confidence 3689999999999998888665532 123567999999999999999999999853
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+..+-..++.+.... ...-|++|||+|.+..
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~------------------------ 133 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST------------------------ 133 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH------------------------
Confidence 24444433322334566665433 2346999999996632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..|+.. .+..++|++||.+++|.+.|+. |+ .+++|..++.++....+...+..+
T Consensus 134 ------------~a~naLLk~LEep----p~~~~fIl~t~~~~kl~~tI~S--Rc-~~~~f~~l~~~~i~~~L~~i~~~e 194 (576)
T PRK14965 134 ------------NAFNALLKTLEEP----PPHVKFIFATTEPHKVPITILS--RC-QRFDFRRIPLQKIVDRLRYIADQE 194 (576)
T ss_pred ------------HHHHHHHHHHHcC----CCCeEEEEEeCChhhhhHHHHH--hh-hhhhcCCCCHHHHHHHHHHHHHHh
Confidence 2234577777765 3457888999999999999997 66 578999999999888888877766
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+..+.+
T Consensus 195 gi~i~~ 200 (576)
T PRK14965 195 GISISD 200 (576)
T ss_pred CCCCCH
Confidence 544433
No 98
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=3e-12 Score=129.51 Aligned_cols=176 Identities=23% Similarity=0.240 Sum_probs=113.1
Q ss_pred Cccc-cccchhhHHHHHHHHHHHhhchhhhhh--cCcc-ccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC-
Q 040638 190 TFDT-LAMVTDMKKMIMDDLERFLKRKDYYRR--VGKA-WKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG- 264 (419)
Q Consensus 190 ~f~~-l~g~~~~k~~i~~~l~~~~~~~~~~~~--~g~~-~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~- 264 (419)
.++. ++|+++.|+.+...+..++++-..-.. -+.. .+.++||+||||||||++++++|..++.+++.++++.+..
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~ 147 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA 147 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence 4554 799999999997776655443211100 0122 3467999999999999999999999999999988876532
Q ss_pred -------hHHHHHHHHH------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 265 -------NKHLRKVLIA------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 265 -------~~~l~~l~~~------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
...+..++.. ...++||+|||||.+..........+.. .......
T Consensus 148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~----------------------s~~~vQ~ 205 (412)
T PRK05342 148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDV----------------------SGEGVQQ 205 (412)
T ss_pred CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCc----------------------ccHHHHH
Confidence 2223333322 2468999999999886521111100000 0123556
Q ss_pred hHHHHhcCcccC---CC------CCEEEEEecCCCC--------------------------------------------
Q 040638 332 GLLNFTNGLWSS---SG------DERIIVFTTNHKD-------------------------------------------- 358 (419)
Q Consensus 332 ~Ll~~ldg~~s~---~g------~~~iiV~tTN~~~-------------------------------------------- 358 (419)
.||..|||-... .| .+.++|.|+|-..
T Consensus 206 ~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~ 285 (412)
T PRK05342 206 ALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQV 285 (412)
T ss_pred HHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhc
Confidence 788888865311 11 2346677776510
Q ss_pred --------CCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 040638 359 --------RLDPALLRPGRMDVHIHMSYCTLCGFKILAS 389 (419)
Q Consensus 359 --------~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~ 389 (419)
.+.|+|+ ||+|..+.|..++.++...|+.
T Consensus 286 ~~~dL~~~gf~PEfl--gRld~iv~f~~L~~~~L~~Il~ 322 (412)
T PRK05342 286 EPEDLIKFGLIPEFI--GRLPVVATLEELDEEALVRILT 322 (412)
T ss_pred CHHHHHHHhhhHHHh--CCCCeeeecCCCCHHHHHHHHH
Confidence 0223333 6999999999999999999997
No 99
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.43 E-value=2.4e-12 Score=132.17 Aligned_cols=161 Identities=17% Similarity=0.192 Sum_probs=112.8
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
-.|.+|++++|.+.+++.+...+.. . ..+..||||||||+|||++++++|+.+..
T Consensus 11 yRP~~~~diiGq~~~v~~L~~~i~~----~--------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c 78 (451)
T PRK06305 11 YRPQTFSEILGQDAVVAVLKNALRF----N--------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQC 78 (451)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc----C--------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCccc
Confidence 4689999999999888876655532 1 24567999999999999999999998742
Q ss_pred ------------cEEEEEecccCChHHHHHHHHH------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 253 ------------DVYDLELSSVEGNKHLRKVLIA------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 253 ------------~v~~l~l~~~~~~~~l~~l~~~------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
+++.++.....+-..++.+... ...+.|++|||+|.+..
T Consensus 79 ~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~----------------------- 135 (451)
T PRK06305 79 ASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK----------------------- 135 (451)
T ss_pred HHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH-----------------------
Confidence 3334432222223445443322 14578999999986632
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.....|+..++.. .+..++|++||.+..|.++|.+ |+ ..+++..++.++....+...+..
T Consensus 136 -------------~~~n~LLk~lEep----~~~~~~Il~t~~~~kl~~tI~s--Rc-~~v~f~~l~~~el~~~L~~~~~~ 195 (451)
T PRK06305 136 -------------EAFNSLLKTLEEP----PQHVKFFLATTEIHKIPGTILS--RC-QKMHLKRIPEETIIDKLALIAKQ 195 (451)
T ss_pred -------------HHHHHHHHHhhcC----CCCceEEEEeCChHhcchHHHH--hc-eEEeCCCCCHHHHHHHHHHHHHH
Confidence 1233567777664 2356788888999999999998 76 46899999999988888887765
Q ss_pred CCCCChH
Q 040638 395 TEHPLFS 401 (419)
Q Consensus 395 ~~~~l~~ 401 (419)
++....+
T Consensus 196 eg~~i~~ 202 (451)
T PRK06305 196 EGIETSR 202 (451)
T ss_pred cCCCCCH
Confidence 5444433
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.3e-12 Score=132.36 Aligned_cols=159 Identities=12% Similarity=0.215 Sum_probs=110.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
-+|.+|++++|.+.+++.+...+.. . ..+..|||+||||+||||+|+++|+.+..
T Consensus 10 ~RP~~~~eiiGq~~~~~~L~~~~~~----~--------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~ 77 (397)
T PRK14955 10 YRPKKFADITAQEHITRTIQNSLRM----G--------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV 77 (397)
T ss_pred cCCCcHhhccChHHHHHHHHHHHHh----C--------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC
Confidence 4699999999999998877554431 1 23557999999999999999999998854
Q ss_pred -------------------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCC
Q 040638 253 -------------------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWH 307 (419)
Q Consensus 253 -------------------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~ 307 (419)
++..++.....+-..++.+.... ...-|++|||+|.+..
T Consensus 78 ~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~---------------- 141 (397)
T PRK14955 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI---------------- 141 (397)
T ss_pred CCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH----------------
Confidence 22223322222234566654443 2456999999987632
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHH
Q 040638 308 SPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKIL 387 (419)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l 387 (419)
.....|+..++.. .+..++|++|+.+..|-++|.+ |+ ..+++..++.++....
T Consensus 142 --------------------~~~~~LLk~LEep----~~~t~~Il~t~~~~kl~~tl~s--R~-~~v~f~~l~~~ei~~~ 194 (397)
T PRK14955 142 --------------------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLEEIQQQ 194 (397)
T ss_pred --------------------HHHHHHHHHHhcC----CCCeEEEEEeCChHHhHHHHHH--HH-HHhhcCCCCHHHHHHH
Confidence 1223466666544 2456777888888899899887 65 4689999999998888
Q ss_pred HHHhhCCCCCCC
Q 040638 388 ASNYLGITEHPL 399 (419)
Q Consensus 388 ~~~~l~~~~~~l 399 (419)
+...+..++..+
T Consensus 195 l~~~~~~~g~~i 206 (397)
T PRK14955 195 LQGICEAEGISV 206 (397)
T ss_pred HHHHHHHcCCCC
Confidence 888776544333
No 101
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=2.8e-12 Score=132.58 Aligned_cols=162 Identities=17% Similarity=0.250 Sum_probs=114.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|.+.+++.+...+.. ...+..||||||||+||||+++++|..++.
T Consensus 10 yRP~~f~diiGq~~i~~~L~~~i~~------------~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~ 77 (486)
T PRK14953 10 YRPKFFKEVIGQEIVVRILKNAVKL------------QRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCE 77 (486)
T ss_pred hCCCcHHHccChHHHHHHHHHHHHc------------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccH
Confidence 4689999999999988877665532 123556999999999999999999998752
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++.++-.+-..++.+.... ..+.|++|||+|.+..
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------------------ 133 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------------------ 133 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------------------
Confidence 34444332222233455543322 2457999999996632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. ....++|++|+.++.|.+++.+ |+ ..+.++.++.++....+...+...
T Consensus 134 ------------~a~naLLk~LEep----p~~~v~Il~tt~~~kl~~tI~S--Rc-~~i~f~~ls~~el~~~L~~i~k~e 194 (486)
T PRK14953 134 ------------EAFNALLKTLEEP----PPRTIFILCTTEYDKIPPTILS--RC-QRFIFSKPTKEQIKEYLKRICNEE 194 (486)
T ss_pred ------------HHHHHHHHHHhcC----CCCeEEEEEECCHHHHHHHHHH--hc-eEEEcCCCCHHHHHHHHHHHHHHc
Confidence 1223466666654 3456788888888899999987 66 479999999999999999988776
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+....++
T Consensus 195 gi~id~~ 201 (486)
T PRK14953 195 KIEYEEK 201 (486)
T ss_pred CCCCCHH
Confidence 6555443
No 102
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.41 E-value=9.4e-13 Score=142.08 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=104.9
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEEEEe
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYDLEL 259 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~l~l 259 (419)
.++.++|-++..+.+++.+.. .-+..+||+||||||||++++++|..+ +..++.+++
T Consensus 184 ~~~~liGR~~ei~~~i~iL~r-------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~ 250 (758)
T PRK11034 184 GIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDI 250 (758)
T ss_pred CCCcCcCCCHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccH
Confidence 466777776666666554433 125568999999999999999999764 455666655
Q ss_pred cccC--------ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 260 SSVE--------GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 260 ~~~~--------~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
..+. .+..++.++... ..++||||||||.+++....... ...
T Consensus 251 ~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g----------------------------~~d 302 (758)
T PRK11034 251 GSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG----------------------------QVD 302 (758)
T ss_pred HHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCc----------------------------HHH
Confidence 4431 234566666543 45789999999998763211000 111
Q ss_pred HHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 330 TFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 330 ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
. .|.+..+.. .++..+|++||.++ .+||||.| ||+ .|+++.|+.+++..|++.+..
T Consensus 303 ~---~nlLkp~L~--~g~i~vIgATt~~E~~~~~~~D~AL~r--RFq-~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 303 A---ANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred H---HHHHHHHHh--CCCeEEEecCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHH
Confidence 1 122222211 35688999998765 57999999 996 799999999999999997654
No 103
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.41 E-value=2.2e-12 Score=121.63 Aligned_cols=170 Identities=18% Similarity=0.211 Sum_probs=102.6
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCC
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEG 264 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~ 264 (419)
..+||+.+-. .- +..+..+......+ ..+.++||||||||||+|++++|+++. ..+..+.+....
T Consensus 18 ~~~fd~f~~~-~n-~~a~~~l~~~~~~~---------~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~- 85 (235)
T PRK08084 18 DETFASFYPG-DN-DSLLAALQNALRQE---------HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRA- 85 (235)
T ss_pred cCCccccccC-cc-HHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHh-
Confidence 3489987733 11 22344454443221 124689999999999999999998764 445555553321
Q ss_pred hHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCC
Q 040638 265 NKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSS 344 (419)
Q Consensus 265 ~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~ 344 (419)
....+++....+-.+++||||+.+... ......|.+.++.....
T Consensus 86 -~~~~~~~~~~~~~dlliiDdi~~~~~~----------------------------------~~~~~~lf~l~n~~~e~- 129 (235)
T PRK08084 86 -WFVPEVLEGMEQLSLVCIDNIECIAGD----------------------------------ELWEMAIFDLYNRILES- 129 (235)
T ss_pred -hhhHHHHHHhhhCCEEEEeChhhhcCC----------------------------------HHHHHHHHHHHHHHHHc-
Confidence 112233333334468999999976430 11111233333333321
Q ss_pred CCCEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 345 GDERIIVFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 345 g~~~iiV~tTN~~~~---LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
|...+++.+++.|.. +.|.|.+ |+. ..+++..|+.+++.++++......+..+.+++...+
T Consensus 130 g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L 195 (235)
T PRK08084 130 GRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFL 195 (235)
T ss_pred CCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 222455555556655 5799998 775 889999999999999998866555566666655433
No 104
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.41 E-value=2.5e-12 Score=138.27 Aligned_cols=152 Identities=20% Similarity=0.234 Sum_probs=101.9
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~ 265 (419)
-+|.+|++++|.+.+.... ..+...+... -...++|||||||||||+++++|+.++.++..++.... +.
T Consensus 22 ~RP~tldd~vGQe~ii~~~-~~L~~~i~~~---------~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-~i 90 (725)
T PRK13341 22 LRPRTLEEFVGQDHILGEG-RLLRRAIKAD---------RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-GV 90 (725)
T ss_pred cCCCcHHHhcCcHHHhhhh-HHHHHHHhcC---------CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-hh
Confidence 4699999999988776531 1222222211 12358999999999999999999999988877765432 22
Q ss_pred HHHHHHHHH-------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 266 KHLRKVLIA-------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 266 ~~l~~l~~~-------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
..++..+.. ...+.||||||||.+.. .....|+..++
T Consensus 91 ~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~------------------------------------~qQdaLL~~lE 134 (725)
T PRK13341 91 KDLRAEVDRAKERLERHGKRTILFIDEVHRFNK------------------------------------AQQDALLPWVE 134 (725)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCH------------------------------------HHHHHHHHHhc
Confidence 233333322 23567999999997632 01112444443
Q ss_pred CcccCCCCCEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 339 GLWSSSGDERIIVFTT--NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 339 g~~s~~g~~~iiV~tT--N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
. +.+++|++| |....++++|++ |+ ..+.++.++.++...+++.++.
T Consensus 135 ~------g~IiLI~aTTenp~~~l~~aL~S--R~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 135 N------GTITLIGATTENPYFEVNKALVS--RS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred C------ceEEEEEecCCChHhhhhhHhhc--cc-cceecCCCCHHHHHHHHHHHHH
Confidence 2 235566544 444678999998 54 4589999999999999999886
No 105
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.40 E-value=4.1e-12 Score=134.20 Aligned_cols=161 Identities=12% Similarity=0.214 Sum_probs=112.9
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD------------ 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~------------ 253 (419)
-+|.+|++++|.+.+++.+...+. . -..+.+|||+|||||||||+|+++|+.+...
T Consensus 10 yRP~~f~eivGQe~i~~~L~~~i~----~--------~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~ 77 (620)
T PRK14954 10 YRPSKFADITAQEHITHTIQNSLR----M--------DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV 77 (620)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHH----c--------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc
Confidence 368999999999988887655332 1 1345679999999999999999999998652
Q ss_pred --------------------EEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCC
Q 040638 254 --------------------VYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWH 307 (419)
Q Consensus 254 --------------------v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~ 307 (419)
+..++.....+-..++.+.... ..+-|++|||+|.+..
T Consensus 78 ~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~---------------- 141 (620)
T PRK14954 78 TEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST---------------- 141 (620)
T ss_pred CCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH----------------
Confidence 2222222222235566655443 2456999999986632
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHH
Q 040638 308 SPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKIL 387 (419)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l 387 (419)
.....|+..++.. .+..++|++|+.+.+|-++|.+ |+ ..+++..++.++....
T Consensus 142 --------------------~a~naLLK~LEeP----p~~tv~IL~t~~~~kLl~TI~S--Rc-~~vef~~l~~~ei~~~ 194 (620)
T PRK14954 142 --------------------AAFNAFLKTLEEP----PPHAIFIFATTELHKIPATIAS--RC-QRFNFKRIPLDEIQSQ 194 (620)
T ss_pred --------------------HHHHHHHHHHhCC----CCCeEEEEEeCChhhhhHHHHh--hc-eEEecCCCCHHHHHHH
Confidence 1234577777765 2446777888888999999987 65 6799999999998888
Q ss_pred HHHhhCCCCCCChH
Q 040638 388 ASNYLGITEHPLFS 401 (419)
Q Consensus 388 ~~~~l~~~~~~l~~ 401 (419)
+...+..++..+.+
T Consensus 195 L~~i~~~egi~I~~ 208 (620)
T PRK14954 195 LQMICRAEGIQIDA 208 (620)
T ss_pred HHHHHHHcCCCCCH
Confidence 88777655544433
No 106
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=6.3e-12 Score=130.27 Aligned_cols=161 Identities=19% Similarity=0.238 Sum_probs=116.3
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-------------- 251 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------------- 251 (419)
-+|.+|++++|.+.+++.+...+.. . ..+..||||||||+|||++++++|+.+.
T Consensus 8 yRP~~fdeiiGqe~v~~~L~~~I~~----g--------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~ 75 (535)
T PRK08451 8 YRPKHFDELIGQESVSKTLSLALDN----N--------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCI 75 (535)
T ss_pred HCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 4789999999999998877665531 1 2456799999999999999999999873
Q ss_pred ----------CcEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 252 ----------FDVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 252 ----------~~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
.+++.++..+-.+-..++.+.... ...-|++|||+|.+..
T Consensus 76 ~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~------------------------ 131 (535)
T PRK08451 76 QCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK------------------------ 131 (535)
T ss_pred HHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------------------
Confidence 234444432222345677766442 2346999999986632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....||..++.. .....+|++|+.+.+|.++++. |+ .+++|..++.++....+...+..+
T Consensus 132 ------------~A~NALLK~LEEp----p~~t~FIL~ttd~~kL~~tI~S--Rc-~~~~F~~Ls~~ei~~~L~~Il~~E 192 (535)
T PRK08451 132 ------------EAFNALLKTLEEP----PSYVKFILATTDPLKLPATILS--RT-QHFRFKQIPQNSIISHLKTILEKE 192 (535)
T ss_pred ------------HHHHHHHHHHhhc----CCceEEEEEECChhhCchHHHh--hc-eeEEcCCCCHHHHHHHHHHHHHHc
Confidence 2334567777665 2346778888888999999998 75 689999999999999888888766
Q ss_pred CCCChH
Q 040638 396 EHPLFS 401 (419)
Q Consensus 396 ~~~l~~ 401 (419)
+....+
T Consensus 193 Gi~i~~ 198 (535)
T PRK08451 193 GVSYEP 198 (535)
T ss_pred CCCCCH
Confidence 554433
No 107
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=3.5e-12 Score=137.71 Aligned_cols=159 Identities=13% Similarity=0.216 Sum_probs=109.5
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHH
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 272 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~ 272 (419)
.++|+++.++.|.+.+.....+- ..-+ .+...+||+||||||||.+++++|..++.+++.++++.......+.+++
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl---~~~~-kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~Li 534 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGL---GHEH-KPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLI 534 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccc---cCCC-CCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHc
Confidence 36888888888888776543211 0001 1223499999999999999999999999999999887764322222221
Q ss_pred ---------------H---HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHH
Q 040638 273 ---------------I---ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334 (419)
Q Consensus 273 ---------------~---~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll 334 (419)
. .....||++|||||.+-+ .....|+
T Consensus 535 G~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~------------------------------------~v~~~LL 578 (758)
T PRK11034 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP------------------------------------DVFNLLL 578 (758)
T ss_pred CCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhH------------------------------------HHHHHHH
Confidence 1 123468999999996521 2344566
Q ss_pred HHhc-CcccCCC------CCEEEEEecCCC-------------------------CCCCccccCCCCcceEEEeCCCCHH
Q 040638 335 NFTN-GLWSSSG------DERIIVFTTNHK-------------------------DRLDPALLRPGRMDVHIHMSYCTLC 382 (419)
Q Consensus 335 ~~ld-g~~s~~g------~~~iiV~tTN~~-------------------------~~LdpALlrpGR~d~~I~~~~~~~~ 382 (419)
..+| |.....+ .+.++|+|||.- ..+.|.++. |+|.+|.|+..+.+
T Consensus 579 q~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~ 656 (758)
T PRK11034 579 QVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFDHLSTD 656 (758)
T ss_pred HHHhcCeeecCCCceecCCCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHc--cCCEEEEcCCCCHH
Confidence 6666 3222111 357899999921 125577777 99999999999999
Q ss_pred HHHHHHHHhhC
Q 040638 383 GFKILASNYLG 393 (419)
Q Consensus 383 ~~~~l~~~~l~ 393 (419)
+...|+..++.
T Consensus 657 ~l~~I~~~~l~ 667 (758)
T PRK11034 657 VIHQVVDKFIV 667 (758)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 108
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=4.5e-12 Score=133.04 Aligned_cols=162 Identities=17% Similarity=0.249 Sum_probs=115.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|.+|++++|++.+++.+...+.. . ..+..||||||||+|||++++++|+.+..
T Consensus 10 yRP~~f~diiGqe~iv~~L~~~i~~----~--------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~ 77 (563)
T PRK06647 10 RRPRDFNSLEGQDFVVETLKHSIES----N--------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECS 77 (563)
T ss_pred hCCCCHHHccCcHHHHHHHHHHHHc----C--------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccch
Confidence 4689999999999999887665532 1 23557999999999999999999998853
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++..+-..-..++.+.... ...-|++|||+|.+..
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------------------ 133 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------------------ 133 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------------------
Confidence 23333322212234555554322 3456999999996632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. ....++|++|+.+.+|.++|+. |+. .+++..++.++....++..+..+
T Consensus 134 ------------~a~naLLK~LEep----p~~~vfI~~tte~~kL~~tI~S--Rc~-~~~f~~l~~~el~~~L~~i~~~e 194 (563)
T PRK06647 134 ------------SAFNALLKTIEEP----PPYIVFIFATTEVHKLPATIKS--RCQ-HFNFRLLSLEKIYNMLKKVCLED 194 (563)
T ss_pred ------------HHHHHHHHhhccC----CCCEEEEEecCChHHhHHHHHH--hce-EEEecCCCHHHHHHHHHHHHHHc
Confidence 2334567766654 3457888888889999999998 764 68999999999999998887655
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
+..+.++
T Consensus 195 gi~id~e 201 (563)
T PRK06647 195 QIKYEDE 201 (563)
T ss_pred CCCCCHH
Confidence 5554444
No 109
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.40 E-value=5.3e-12 Score=133.14 Aligned_cols=162 Identities=16% Similarity=0.256 Sum_probs=116.8
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD------------ 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~------------ 253 (419)
..|.+|++|+|.+.+++.+...+.. + ..+.++||+||+|+||||+++++|+.++..
T Consensus 18 yRP~~f~dliGq~~~v~~L~~~~~~---g---------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~ 85 (598)
T PRK09111 18 YRPQTFDDLIGQEAMVRTLTNAFET---G---------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDL 85 (598)
T ss_pred hCCCCHHHhcCcHHHHHHHHHHHHc---C---------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCcccc
Confidence 4799999999999888887664432 1 235679999999999999999999988643
Q ss_pred -----------------EEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcc
Q 040638 254 -----------------VYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPR 310 (419)
Q Consensus 254 -----------------v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~ 310 (419)
++.++..+..+-..+|+++... ...-|++|||+|.+..
T Consensus 86 cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------------- 146 (598)
T PRK09111 86 CGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------------- 146 (598)
T ss_pred CcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH-------------------
Confidence 2222222222334666665443 2457999999986632
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 311 RDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
.....|+..++.. .+..++|++|+.++++.+.++. |+ ..++|..++.++....++.
T Consensus 147 -----------------~a~naLLKtLEeP----p~~~~fIl~tte~~kll~tI~S--Rc-q~~~f~~l~~~el~~~L~~ 202 (598)
T PRK09111 147 -----------------AAFNALLKTLEEP----PPHVKFIFATTEIRKVPVTVLS--RC-QRFDLRRIEADVLAAHLSR 202 (598)
T ss_pred -----------------HHHHHHHHHHHhC----CCCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHH
Confidence 2244567666655 3457888888888889999987 76 6799999999999999999
Q ss_pred hhCCCCCCChHH
Q 040638 391 YLGITEHPLFSE 402 (419)
Q Consensus 391 ~l~~~~~~l~~~ 402 (419)
.+..++..+.++
T Consensus 203 i~~kegi~i~~e 214 (598)
T PRK09111 203 IAAKEGVEVEDE 214 (598)
T ss_pred HHHHcCCCCCHH
Confidence 887766555443
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.38 E-value=6.3e-12 Score=117.73 Aligned_cols=168 Identities=16% Similarity=0.199 Sum_probs=103.6
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecc
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSS 261 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~ 261 (419)
...|.+||++.+... +.++..+..... +....+.++|+||||||||+|++++++.+ +..+..+++..
T Consensus 11 ~~~~~~~d~f~~~~~--~~~~~~l~~~~~--------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 11 PPPPPTFDNFVAGEN--AELVARLRELAA--------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CCChhhhcccccCCc--HHHHHHHHHHHh--------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 345668999773221 223333333322 22234579999999999999999999976 55666666644
Q ss_pred cCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Q 040638 262 VEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW 341 (419)
Q Consensus 262 ~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~ 341 (419)
.. ..+.......+++|||+|.+.. ..+.. |...++...
T Consensus 81 ~~------~~~~~~~~~~~liiDdi~~l~~---------------------------------~~~~~---L~~~~~~~~ 118 (227)
T PRK08903 81 PL------LAFDFDPEAELYAVDDVERLDD---------------------------------AQQIA---LFNLFNRVR 118 (227)
T ss_pred hH------HHHhhcccCCEEEEeChhhcCc---------------------------------hHHHH---HHHHHHHHH
Confidence 32 1223344567999999997532 01122 333343332
Q ss_pred cCCCCCEEEEEecCCCC---CCCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh
Q 040638 342 SSSGDERIIVFTTNHKD---RLDPALLRPGRM--DVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE 408 (419)
Q Consensus 342 s~~g~~~iiV~tTN~~~---~LdpALlrpGR~--d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 408 (419)
. .+..++|+|++.+. .+.+.|.. || ...|+++.|+.++...++..+....+..+.++.-..+.
T Consensus 119 ~--~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~ 186 (227)
T PRK08903 119 A--HGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLL 186 (227)
T ss_pred H--cCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 1 12345666665432 35577776 66 57999999999999999988776666666666554443
No 111
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=9.9e-12 Score=131.83 Aligned_cols=162 Identities=15% Similarity=0.275 Sum_probs=119.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-------------- 251 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------------- 251 (419)
.+|.+|++++|.+++++.+...+.. ...+..||||||+|+|||++++++|+.+.
T Consensus 11 yRP~~f~~viGq~~~~~~L~~~i~~------------~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C 78 (614)
T PRK14971 11 YRPSTFESVVGQEALTTTLKNAIAT------------NKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNEC 78 (614)
T ss_pred HCCCCHHHhcCcHHHHHHHHHHHHc------------CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcc
Confidence 4789999999999998887766542 12456799999999999999999999874
Q ss_pred -----------CcEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 252 -----------FDVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 252 -----------~~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
++++.++..+..+-..++.++..+. ..-|++|||+|.+..
T Consensus 79 ~sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~----------------------- 135 (614)
T PRK14971 79 ESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ----------------------- 135 (614)
T ss_pred hHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH-----------------------
Confidence 3555555543333456777664442 345999999987632
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.....|+..|+.. .+..++|++|+.+.+|-++|++ |+ ..++|..++.++....++..+..
T Consensus 136 -------------~a~naLLK~LEep----p~~tifIL~tt~~~kIl~tI~S--Rc-~iv~f~~ls~~ei~~~L~~ia~~ 195 (614)
T PRK14971 136 -------------AAFNAFLKTLEEP----PSYAIFILATTEKHKILPTILS--RC-QIFDFNRIQVADIVNHLQYVASK 195 (614)
T ss_pred -------------HHHHHHHHHHhCC----CCCeEEEEEeCCchhchHHHHh--hh-heeecCCCCHHHHHHHHHHHHHH
Confidence 1234577777765 2446788888888999999998 76 55999999999999888887776
Q ss_pred CCCCChHH
Q 040638 395 TEHPLFSE 402 (419)
Q Consensus 395 ~~~~l~~~ 402 (419)
++....++
T Consensus 196 egi~i~~~ 203 (614)
T PRK14971 196 EGITAEPE 203 (614)
T ss_pred cCCCCCHH
Confidence 65554443
No 112
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.37 E-value=2.6e-12 Score=132.43 Aligned_cols=178 Identities=17% Similarity=0.234 Sum_probs=110.2
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEe
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLEL 259 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l 259 (419)
+.+..+|++++..+.-+. ....+......+ |.. .+.++||||||||||+|++|+|+++ +..++.+..
T Consensus 115 l~~~~tfd~fv~g~~n~~-a~~~~~~~~~~~------~~~-~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRL-AHAAALAVAENP------GKA-YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCCCcccccccCCCcHH-HHHHHHHHHhCc------Ccc-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 444458999654333322 223333333222 212 2459999999999999999999998 455777766
Q ss_pred cccCCh-------HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 040638 260 SSVEGN-------KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332 (419)
Q Consensus 260 ~~~~~~-------~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 332 (419)
..+... .....+.....+..+|+|||||.+... ..+...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~----------------------------------~~~~~~ 232 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK----------------------------------ERTQEE 232 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC----------------------------------HHHHHH
Confidence 543110 111222333456789999999977431 112233
Q ss_pred HHHHhcCcccCCCCCEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 333 LLNFTNGLWSSSGDERIIVFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 333 Ll~~ldg~~s~~g~~~iiV~tTN~~~~---LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
|+..++.+... +..++|.++..|.. ++++|.. ||. ..+++..|+.+++..+++..+...+..+.+++...+
T Consensus 233 l~~~~n~l~~~--~~~iiits~~~p~~l~~l~~~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 308 (450)
T PRK00149 233 FFHTFNALHEA--GKQIVLTSDRPPKELPGLEERLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFI 308 (450)
T ss_pred HHHHHHHHHHC--CCcEEEECCCCHHHHHHHHHHHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45555555432 22344444445544 6789988 885 689999999999999999999876666666665544
Q ss_pred h
Q 040638 408 E 408 (419)
Q Consensus 408 ~ 408 (419)
.
T Consensus 309 a 309 (450)
T PRK00149 309 A 309 (450)
T ss_pred H
Confidence 3
No 113
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.1e-11 Score=131.60 Aligned_cols=159 Identities=19% Similarity=0.276 Sum_probs=113.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
..|.+|++++|.+++++.+...+..- ....+|||+||||+|||++|+++|+.+..
T Consensus 10 yRP~~f~~liGq~~i~~~L~~~l~~~------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~ 77 (620)
T PRK14948 10 YRPQRFDELVGQEAIATTLKNALISN------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGK 77 (620)
T ss_pred hCCCcHhhccChHHHHHHHHHHHHcC------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcc
Confidence 46889999999998888876655421 12346999999999999999999999854
Q ss_pred -------------cEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhH
Q 040638 253 -------------DVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDL 313 (419)
Q Consensus 253 -------------~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (419)
+++.++......-..+++++.... ..-|++|||+|.+..
T Consensus 78 C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~---------------------- 135 (620)
T PRK14948 78 CELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST---------------------- 135 (620)
T ss_pred cHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH----------------------
Confidence 333443322223456777765442 346999999996632
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 314 MLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 314 ~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
.....||..++.. .+..++|++|++++.|-|+|+. |+ ..++|..++.++....+.....
T Consensus 136 --------------~a~naLLK~LEeP----p~~tvfIL~t~~~~~llpTIrS--Rc-~~~~f~~l~~~ei~~~L~~ia~ 194 (620)
T PRK14948 136 --------------AAFNALLKTLEEP----PPRVVFVLATTDPQRVLPTIIS--RC-QRFDFRRIPLEAMVQHLSEIAE 194 (620)
T ss_pred --------------HHHHHHHHHHhcC----CcCeEEEEEeCChhhhhHHHHh--he-eEEEecCCCHHHHHHHHHHHHH
Confidence 2334577777754 3457888888889999999987 76 6689999988887777776665
Q ss_pred CCCCCC
Q 040638 394 ITEHPL 399 (419)
Q Consensus 394 ~~~~~l 399 (419)
.++..+
T Consensus 195 kegi~i 200 (620)
T PRK14948 195 KESIEI 200 (620)
T ss_pred HhCCCC
Confidence 544333
No 114
>PRK08727 hypothetical protein; Validated
Probab=99.37 E-value=7.1e-12 Score=117.99 Aligned_cols=166 Identities=20% Similarity=0.232 Sum_probs=104.4
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~ 263 (419)
...+|++.++.+.-. +..+..... | .+...++|+||+|||||+|++|+++.+ +..+..+.+...
T Consensus 14 ~~~~f~~f~~~~~n~---~~~~~~~~~--------~-~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~- 80 (233)
T PRK08727 14 SDQRFDSYIAAPDGL---LAQLQALAA--------G-QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA- 80 (233)
T ss_pred CcCChhhccCCcHHH---HHHHHHHHh--------c-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh-
Confidence 344899987665431 122221111 1 123449999999999999999998876 455555555332
Q ss_pred ChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC
Q 040638 264 GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS 343 (419)
Q Consensus 264 ~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~ 343 (419)
...+...+....+..+|+|||+|.+.... .....+..++|.+ ...
T Consensus 81 -~~~~~~~~~~l~~~dlLiIDDi~~l~~~~-------------------------------~~~~~lf~l~n~~---~~~ 125 (233)
T PRK08727 81 -AGRLRDALEALEGRSLVALDGLESIAGQR-------------------------------EDEVALFDFHNRA---RAA 125 (233)
T ss_pred -hhhHHHHHHHHhcCCEEEEeCcccccCCh-------------------------------HHHHHHHHHHHHH---HHc
Confidence 23345566666777899999999765310 0122333344433 221
Q ss_pred CCCCEEEEEecC-CCCCC---CccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHH
Q 040638 344 SGDERIIVFTTN-HKDRL---DPALLRPGRM--DVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEE 405 (419)
Q Consensus 344 ~g~~~iiV~tTN-~~~~L---dpALlrpGR~--d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~ 405 (419)
+ ..+|+|+| .|..+ +|+|.+ || ..+++++.|+.+++..+++......+..+.++...
T Consensus 126 --~-~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~ 188 (233)
T PRK08727 126 --G-ITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAID 188 (233)
T ss_pred --C-CeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 1 23555554 66655 799998 75 67899999999999999998665555555555443
No 115
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.1e-11 Score=131.61 Aligned_cols=162 Identities=14% Similarity=0.209 Sum_probs=113.3
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
..|.+|++++|.+++++.+...+..- .....||||||||+|||++++++|+.++.
T Consensus 10 yRP~~~~eiiGq~~~~~~L~~~i~~~------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c 77 (585)
T PRK14950 10 WRSQTFAELVGQEHVVQTLRNAIAEG------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTC 77 (585)
T ss_pred hCCCCHHHhcCCHHHHHHHHHHHHhC------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccC
Confidence 47899999999999998876555321 12445899999999999999999998742
Q ss_pred ------------cEEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 253 ------------DVYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 253 ------------~v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
+++.++.+...+-..++.+.... ....|++|||+|.+..
T Consensus 78 ~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~----------------------- 134 (585)
T PRK14950 78 EMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLST----------------------- 134 (585)
T ss_pred HHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH-----------------------
Confidence 23334432222334555554322 2357999999986632
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
..+..|+..++... ...++|++|+..+.+.+.+.+ |+ ..++|..++.++....+...+..
T Consensus 135 -------------~a~naLLk~LEepp----~~tv~Il~t~~~~kll~tI~S--R~-~~i~f~~l~~~el~~~L~~~a~~ 194 (585)
T PRK14950 135 -------------AAFNALLKTLEEPP----PHAIFILATTEVHKVPATILS--RC-QRFDFHRHSVADMAAHLRKIAAA 194 (585)
T ss_pred -------------HHHHHHHHHHhcCC----CCeEEEEEeCChhhhhHHHHh--cc-ceeeCCCCCHHHHHHHHHHHHHH
Confidence 12344677776652 457788888888889888887 65 46899999999998888888766
Q ss_pred CCCCChHH
Q 040638 395 TEHPLFSE 402 (419)
Q Consensus 395 ~~~~l~~~ 402 (419)
++..+.++
T Consensus 195 egl~i~~e 202 (585)
T PRK14950 195 EGINLEPG 202 (585)
T ss_pred cCCCCCHH
Confidence 55544443
No 116
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.37 E-value=4.9e-12 Score=128.72 Aligned_cols=142 Identities=18% Similarity=0.235 Sum_probs=94.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecccCCh-------HHHHHHHHHccCCeEEEEecCcccccccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN-------KHLRKVLIATENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~~~~-------~~l~~l~~~~~~~sIlviddiD~~~~~~~ 294 (419)
.+++||||||||||+|++|+++++ +..++.+++..+... ..+..+........+|+|||||.+.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~-- 214 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK-- 214 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC--
Confidence 458999999999999999999988 456777765443110 011122223345679999999976431
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecC-CCCC---CCccccCCCCc
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTN-HKDR---LDPALLRPGRM 370 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN-~~~~---LdpALlrpGR~ 370 (419)
..+...|++.++.+... + +.+|+|+| .|.. +++.|.+ ||
T Consensus 215 --------------------------------~~~~~~l~~~~n~~~~~--~-~~iiits~~~p~~l~~l~~~l~S--Rl 257 (405)
T TIGR00362 215 --------------------------------ERTQEEFFHTFNALHEN--G-KQIVLTSDRPPKELPGLEERLRS--RF 257 (405)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHC--C-CCEEEecCCCHHHHhhhhhhhhh--hc
Confidence 01122344545444332 2 23455554 5543 5688888 88
Q ss_pred c--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 371 D--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 371 d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
. ..++++.|+.++|..|++..+...+..+.+++-..+
T Consensus 258 ~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~i 296 (405)
T TIGR00362 258 EWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFI 296 (405)
T ss_pred cCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 6 589999999999999999999877776766655443
No 117
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.36 E-value=1.1e-11 Score=124.99 Aligned_cols=177 Identities=23% Similarity=0.298 Sum_probs=112.4
Q ss_pred Cccc-cccchhhHHHHHHHHHHHhhchhhh----hhcCccc-cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC
Q 040638 190 TFDT-LAMVTDMKKMIMDDLERFLKRKDYY----RRVGKAW-KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE 263 (419)
Q Consensus 190 ~f~~-l~g~~~~k~~i~~~l~~~~~~~~~~----~~~g~~~-~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~ 263 (419)
.++. ++|+++.|+.+...+..++++-... ..-+... +..+||+||||||||++++++|..++.++..++.+.+.
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~ 153 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT 153 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence 4554 5899999999877775554432110 0011122 34699999999999999999999999998877766542
Q ss_pred C--------hHHHHHHHHH------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 264 G--------NKHLRKVLIA------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 264 ~--------~~~l~~l~~~------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
. ...+..++.. ...++||+|||||.+....+.....+..+ ....
T Consensus 154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvs----------------------g~~v 211 (413)
T TIGR00382 154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVS----------------------GEGV 211 (413)
T ss_pred ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhcccccccccc----------------------chhH
Confidence 1 2234444332 24578999999998765211111111100 1234
Q ss_pred HHhHHHHhcCcccC---CC------CCEEEEEecCCC---------------------------C---------------
Q 040638 330 TFGLLNFTNGLWSS---SG------DERIIVFTTNHK---------------------------D--------------- 358 (419)
Q Consensus 330 ls~Ll~~ldg~~s~---~g------~~~iiV~tTN~~---------------------------~--------------- 358 (419)
...||..|||.... .+ .+.++|+|+|-. +
T Consensus 212 q~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~ 291 (413)
T TIGR00382 212 QQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQV 291 (413)
T ss_pred HHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHH
Confidence 55677778776421 12 345788898861 0
Q ss_pred --------CCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 359 --------RLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 359 --------~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
.+.|+|+ ||+|..+.|...+.+++..|+..
T Consensus 292 ~~~dl~~~g~~PEfl--gRld~Iv~f~pL~~~~L~~Il~~ 329 (413)
T TIGR00382 292 EPEDLVKFGLIPEFI--GRLPVIATLEKLDEEALIAILTK 329 (413)
T ss_pred HHHHHHHHhhHHHHh--CCCCeEeecCCCCHHHHHHHHHH
Confidence 0224444 59999999999999999988865
No 118
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.35 E-value=1.6e-11 Score=120.43 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=112.6
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-----c
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-----D 253 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-----~ 253 (419)
.|.. -..|.+|++++|.+++++.+...+. ... ...++||||||||||++++++++.+.. .
T Consensus 6 ~w~~--kyrP~~~~~~~g~~~~~~~l~~~i~----~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~ 70 (319)
T PRK00440 6 IWVE--KYRPRTLDEIVGQEEIVERLKSYVK----EKN---------MPHLLFAGPPGTGKTTAALALARELYGEDWREN 70 (319)
T ss_pred ccch--hhCCCcHHHhcCcHHHHHHHHHHHh----CCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccc
Confidence 4654 4578999999999888877765442 110 124899999999999999999998732 2
Q ss_pred EEEEEecccCChHHHHHHH----HHc----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 254 VYDLELSSVEGNKHLRKVL----IAT----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 254 v~~l~l~~~~~~~~l~~l~----~~~----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
+..++.+.......++..+ ... ..+.+++|||+|.+..
T Consensus 71 ~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~---------------------------------- 116 (319)
T PRK00440 71 FLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS---------------------------------- 116 (319)
T ss_pred eEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH----------------------------------
Confidence 3344333222222222222 111 2356999999997632
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH-HH
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE-VE 404 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~-i~ 404 (419)
.....|+..++... ....+|+++|.+..+.+++.+ |+. .++++.++.++...+++.++...+..+.++ ++
T Consensus 117 --~~~~~L~~~le~~~----~~~~lIl~~~~~~~l~~~l~s--r~~-~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~ 187 (319)
T PRK00440 117 --DAQQALRRTMEMYS----QNTRFILSCNYSSKIIDPIQS--RCA-VFRFSPLKKEAVAERLRYIAENEGIEITDDALE 187 (319)
T ss_pred --HHHHHHHHHHhcCC----CCCeEEEEeCCccccchhHHH--Hhh-eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 01123555555542 235677888888888888887 664 589999999999999999988766555443 33
Q ss_pred HHHh
Q 040638 405 ELIE 408 (419)
Q Consensus 405 ~l~~ 408 (419)
.+++
T Consensus 188 ~l~~ 191 (319)
T PRK00440 188 AIYY 191 (319)
T ss_pred HHHH
Confidence 3433
No 119
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.35 E-value=7.2e-12 Score=121.91 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=91.8
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHH--------------H----HH-HHccCCeEEEEecC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLR--------------K----VL-IATENKSILVVEDI 286 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~--------------~----l~-~~~~~~sIlviddi 286 (419)
.+.+||.||||||||++++++|..++.+++.++++......++- . .+ .....+.++++|||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 46799999999999999999999999999999887652211110 0 11 12245788999999
Q ss_pred cccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC--ccc--------CCCCCEEEEEecCC
Q 040638 287 DCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG--LWS--------SSGDERIIVFTTNH 356 (419)
Q Consensus 287 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg--~~s--------~~g~~~iiV~tTN~ 356 (419)
|..-+ .+++.|...+|. ... .+.....+|+|+|.
T Consensus 144 n~a~p------------------------------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np 187 (327)
T TIGR01650 144 DAGRP------------------------------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANT 187 (327)
T ss_pred hccCH------------------------------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCC
Confidence 96532 233333344331 110 02234678899998
Q ss_pred CC------------CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 357 KD------------RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 357 ~~------------~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
.+ .|++|++. ||-+.+.++||+.++-.+|+.....
T Consensus 188 ~g~Gd~~G~y~Gt~~l~~A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~~ 234 (327)
T TIGR01650 188 IGLGDTTGLYHGTQQINQAQMD--RWSIVTTLNYLEHDNEAAIVLAKAK 234 (327)
T ss_pred CCcCCCCcceeeeecCCHHHHh--heeeEeeCCCCCHHHHHHHHHhhcc
Confidence 65 46899999 9999999999999999999987653
No 120
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.35 E-value=3.7e-12 Score=140.49 Aligned_cols=158 Identities=16% Similarity=0.217 Sum_probs=109.9
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|..++.++|.++..+.+++-|.. ..+...+|+||||||||++++++|..+ +..++.
T Consensus 168 ~~~~~~~~igr~~ei~~~~~~l~r-------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~ 234 (852)
T TIGR03346 168 REGKLDPVIGRDEEIRRTIQVLSR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLA 234 (852)
T ss_pred hCCCCCcCCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEE
Confidence 466889999988766665554422 225678999999999999999999886 677888
Q ss_pred EEecccC--------ChHHHHHHHHHc---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 257 LELSSVE--------GNKHLRKVLIAT---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 257 l~l~~~~--------~~~~l~~l~~~~---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
++++.+. .+..++.++... ..++|||||||+.+.+.....+
T Consensus 235 l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~---------------------------- 286 (852)
T TIGR03346 235 LDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG---------------------------- 286 (852)
T ss_pred eeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc----------------------------
Confidence 8776652 123567777654 3589999999998875211000
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
......+| -... ..++..+|++|+..+ .+|+||.| ||. .|.++.|+.+++..|++.+...
T Consensus 287 -~~d~~~~L---k~~l--~~g~i~~IgaTt~~e~r~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~iL~~~~~~ 351 (852)
T TIGR03346 287 -AMDAGNML---KPAL--ARGELHCIGATTLDEYRKYIEKDAALER--RFQ-PVFVDEPTVEDTISILRGLKER 351 (852)
T ss_pred -hhHHHHHh---chhh--hcCceEEEEeCcHHHHHHHhhcCHHHHh--cCC-EEEeCCCCHHHHHHHHHHHHHH
Confidence 00111122 1111 235688888888664 47999999 996 5899999999999999886544
No 121
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.32 E-value=3.4e-11 Score=120.67 Aligned_cols=159 Identities=14% Similarity=0.154 Sum_probs=104.9
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---------CcEEEEEec
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---------FDVYDLELS 260 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---------~~v~~l~l~ 260 (419)
..+.+.|-++..+.|...+...+.+ ..+..++++||||||||++++++++.+. ..+..+++.
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~~---------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILRG---------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3457888888888887777655432 1234699999999999999999998763 456667765
Q ss_pred ccCChH-H-------------------------HHHHHH---HccCCeEEEEecCcccccccchhhhccCCCCCCCCcch
Q 040638 261 SVEGNK-H-------------------------LRKVLI---ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRR 311 (419)
Q Consensus 261 ~~~~~~-~-------------------------l~~l~~---~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~ 311 (419)
...+.. . +..++. ....+.||+|||+|.+.. . .
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~--~-~--------------- 145 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVG--D-D--------------- 145 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhcc--C-C---------------
Confidence 443211 1 111221 123467999999998852 0 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC---CCCccccCCCCcc-eEEEeCCCCHHHHHHH
Q 040638 312 DLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD---RLDPALLRPGRMD-VHIHMSYCTLCGFKIL 387 (419)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~---~LdpALlrpGR~d-~~I~~~~~~~~~~~~l 387 (419)
...+..|+...+. ....+....+|+++|.++ .+++.+.+ ||. ..|+++.++.++..++
T Consensus 146 ---------------~~~L~~l~~~~~~-~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~i 207 (365)
T TIGR02928 146 ---------------DDLLYQLSRARSN-GDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDI 207 (365)
T ss_pred ---------------cHHHHhHhccccc-cCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHH
Confidence 1122233322111 111234578888998875 68888887 664 6799999999999999
Q ss_pred HHHhhC
Q 040638 388 ASNYLG 393 (419)
Q Consensus 388 ~~~~l~ 393 (419)
+++.+.
T Consensus 208 l~~r~~ 213 (365)
T TIGR02928 208 LENRAE 213 (365)
T ss_pred HHHHHH
Confidence 999885
No 122
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.32 E-value=3e-11 Score=103.23 Aligned_cols=115 Identities=27% Similarity=0.345 Sum_probs=78.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHH-----------HHHHHccCCeEEEEecCccccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLR-----------KVLIATENKSILVVEDIDCCTE 291 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~-----------~l~~~~~~~sIlviddiD~~~~ 291 (419)
.+.++++||||||||++++.+++.+ +.+++.+++.......... ........+.++++||++.+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~ 98 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR 98 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence 4569999999999999999999999 8889988887664322222 1122335689999999996521
Q ss_pred ccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC--CCCCEEEEEecCCCC--CCCccccCC
Q 040638 292 LQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS--SGDERIIVFTTNHKD--RLDPALLRP 367 (419)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~--~g~~~iiV~tTN~~~--~LdpALlrp 367 (419)
....+++..+...... ...+..+|++||... .+++.+..
T Consensus 99 ------------------------------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~- 141 (151)
T cd00009 99 ------------------------------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD- 141 (151)
T ss_pred ------------------------------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh-
Confidence 1112333333333211 124577888888777 78888887
Q ss_pred CCcceEEEeCC
Q 040638 368 GRMDVHIHMSY 378 (419)
Q Consensus 368 GR~d~~I~~~~ 378 (419)
|++.+|++++
T Consensus 142 -r~~~~i~~~~ 151 (151)
T cd00009 142 -RLDIRIVIPL 151 (151)
T ss_pred -hhccEeecCC
Confidence 9999988863
No 123
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.31 E-value=3e-11 Score=128.48 Aligned_cols=171 Identities=18% Similarity=0.284 Sum_probs=110.0
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC----------CcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH----------FDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~----------~~v~~ 256 (419)
.|.+|++++|.....+.++..+.. +.+..++|+|||||||||+++++++... .+++.
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~ia~-------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~ 215 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKVAS-------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVE 215 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEE
Confidence 588999999998888877554421 1244699999999999999999988762 35677
Q ss_pred EEecccCC-hHHH----------------HHHHHH------------ccCCeEEEEecCcccccccchhhhccCCCCCCC
Q 040638 257 LELSSVEG-NKHL----------------RKVLIA------------TENKSILVVEDIDCCTELQDRSAQARTASPYWH 307 (419)
Q Consensus 257 l~l~~~~~-~~~l----------------~~l~~~------------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~ 307 (419)
+++..+.. ...+ ++.+.. ....++|||||++.+-...
T Consensus 216 i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~-------------- 281 (615)
T TIGR02903 216 VDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLL-------------- 281 (615)
T ss_pred EechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHH--------------
Confidence 77655421 1111 011111 1235799999998763310
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC--------cc----------------cCCCCCEEEEE-ecCCCCCCCc
Q 040638 308 SPRRDLMLQIRNLILFVERILETFGLLNFTNG--------LW----------------SSSGDERIIVF-TTNHKDRLDP 362 (419)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg--------~~----------------s~~g~~~iiV~-tTN~~~~Ldp 362 (419)
+ ..|+..++. .| ......+++|+ ||+.++.+++
T Consensus 282 -------------------Q---~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~ 339 (615)
T TIGR02903 282 -------------------Q---NKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINP 339 (615)
T ss_pred -------------------H---HHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCH
Confidence 1 112222211 00 01112344444 6678889999
Q ss_pred cccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc
Q 040638 363 ALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ 409 (419)
Q Consensus 363 ALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~ 409 (419)
+|++ ||. .++++.++.++...|+++++......+.+++..++..
T Consensus 340 aLrS--R~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ 383 (615)
T TIGR02903 340 ALRS--RCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIAR 383 (615)
T ss_pred HHHh--cee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9988 886 5789999999999999999886555566666666654
No 124
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.31 E-value=1.6e-11 Score=128.20 Aligned_cols=143 Identities=17% Similarity=0.172 Sum_probs=97.6
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecccCCh-------HHHHHHHHHccCCeEEEEecCcccccccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN-------KHLRKVLIATENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~~~~-------~~l~~l~~~~~~~sIlviddiD~~~~~~~ 294 (419)
+.++|||++|||||+|++|||+++ +..+..+.+..+... ..+..+.....+..+|+||||+.+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gk-- 392 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDK-- 392 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCC--
Confidence 459999999999999999999987 456777776543210 111122233356789999999977541
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC----CCCCccccCCCCc
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK----DRLDPALLRPGRM 370 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~----~~LdpALlrpGR~ 370 (419)
..+...|++.++.+... + ..||+|+|.+ ..+++.|.+ ||
T Consensus 393 --------------------------------e~tqeeLF~l~N~l~e~-g--k~IIITSd~~P~eL~~l~~rL~S--Rf 435 (617)
T PRK14086 393 --------------------------------ESTQEEFFHTFNTLHNA-N--KQIVLSSDRPPKQLVTLEDRLRN--RF 435 (617)
T ss_pred --------------------------------HHHHHHHHHHHHHHHhc-C--CCEEEecCCChHhhhhccHHHHh--hh
Confidence 11222344555555432 2 3455677754 357899998 66
Q ss_pred --ceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh
Q 040638 371 --DVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE 408 (419)
Q Consensus 371 --d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 408 (419)
...+++..|+.+.|..|++.........+.+++..+|.
T Consensus 436 ~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa 475 (617)
T PRK14086 436 EWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIA 475 (617)
T ss_pred hcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 67779999999999999999998877777777665543
No 125
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.31 E-value=1.6e-11 Score=114.39 Aligned_cols=173 Identities=18% Similarity=0.205 Sum_probs=102.2
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecccCC
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSVEG 264 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~~~ 264 (419)
||++++-.+.-+... ..+......+. . ....++||||+|+|||.|++|+++++ +..+..++...+..
T Consensus 6 tFdnfv~g~~N~~a~-~~~~~ia~~~~------~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~ 77 (219)
T PF00308_consen 6 TFDNFVVGESNELAY-AAAKAIAENPG------E-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIR 77 (219)
T ss_dssp SCCCS--TTTTHHHH-HHHHHHHHSTT------T-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHH
T ss_pred ccccCCcCCcHHHHH-HHHHHHHhcCC------C-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHH
Confidence 899986433322222 22333333321 1 12248999999999999999999986 45677776544311
Q ss_pred -------hHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 265 -------NKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 265 -------~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
+..+..+......--+|+|||++.+.+ ...+...|.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~----------------------------------~~~~q~~lf~l~ 123 (219)
T PF00308_consen 78 EFADALRDGEIEEFKDRLRSADLLIIDDIQFLAG----------------------------------KQRTQEELFHLF 123 (219)
T ss_dssp HHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTT----------------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHcccchhhhhhhhcCCEEEEecchhhcC----------------------------------chHHHHHHHHHH
Confidence 122233444556778999999997754 122344455555
Q ss_pred cCcccCCCCCEEEEEecCCCCCC---CccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRL---DPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE 408 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~L---dpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 408 (419)
+.+... +..+|+.+...|..+ +|.|.. ||. ..+.+..|+.+.+..+++......+..+.+++...+.
T Consensus 124 n~~~~~--~k~li~ts~~~P~~l~~~~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~ 195 (219)
T PF00308_consen 124 NRLIES--GKQLILTSDRPPSELSGLLPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLA 195 (219)
T ss_dssp HHHHHT--TSEEEEEESS-TTTTTTS-HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHH
T ss_pred HHHHhh--CCeEEEEeCCCCccccccChhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 555433 334554444566654 677777 654 4889999999999999999999888888888776554
No 126
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.30 E-value=5.8e-12 Score=138.56 Aligned_cols=154 Identities=17% Similarity=0.213 Sum_probs=107.3
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEEEE
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYDLE 258 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~l~ 258 (419)
..++.++|.++..+.+++.|.. ..+++++|+||||||||++|+++|..+ +..++.++
T Consensus 176 ~~~~~~igr~~ei~~~~~~L~r-------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~ 242 (821)
T CHL00095 176 GNLDPVIGREKEIERVIQILGR-------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLD 242 (821)
T ss_pred CCCCCCCCcHHHHHHHHHHHcc-------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEee
Confidence 3677888887777777665432 236689999999999999999999987 37788888
Q ss_pred ecccC--------ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 259 LSSVE--------GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 259 l~~~~--------~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
++.+- .+..++.++... ..++|||||||+.+.+.....+ ..
T Consensus 243 ~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g-----------------------------~~ 293 (821)
T CHL00095 243 IGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEG-----------------------------AI 293 (821)
T ss_pred HHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCC-----------------------------cc
Confidence 76542 134677888654 3578999999999875321100 00
Q ss_pred HHHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 329 ETFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 329 ~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
..+.+|. ... ..++..+|++|+..+ ..||+|.| ||.. |.++.|+.++...|++...
T Consensus 294 ~~a~lLk---p~l--~rg~l~~IgaTt~~ey~~~ie~D~aL~r--Rf~~-I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 294 DAANILK---PAL--ARGELQCIGATTLDEYRKHIEKDPALER--RFQP-VYVGEPSVEETIEILFGLR 354 (821)
T ss_pred cHHHHhH---HHH--hCCCcEEEEeCCHHHHHHHHhcCHHHHh--cceE-EecCCCCHHHHHHHHHHHH
Confidence 1111221 111 135678888887654 57999999 9964 8999999999888887543
No 127
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=4.7e-12 Score=109.28 Aligned_cols=105 Identities=30% Similarity=0.351 Sum_probs=71.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHH---------------HccCCeEEEEecCcccccc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLI---------------ATENKSILVVEDIDCCTEL 292 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~---------------~~~~~sIlviddiD~~~~~ 292 (419)
+++|+||||||||++++.+|..++.++..+.++...+...|..... ...+++|++||||+..-
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~-- 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAP-- 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG----
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCC--
Confidence 4899999999999999999999999999999987655444432111 11257899999999542
Q ss_pred cchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC----------CCC-----CEEEEEecCCC
Q 040638 293 QDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS----------SGD-----ERIIVFTTNHK 357 (419)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~----------~g~-----~~iiV~tTN~~ 357 (419)
...+..|+..+|.-.-. ... +..+|+|+|..
T Consensus 79 ----------------------------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~ 124 (139)
T PF07728_consen 79 ----------------------------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPR 124 (139)
T ss_dssp ----------------------------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSS
T ss_pred ----------------------------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCC
Confidence 22333344444432111 111 37899999998
Q ss_pred C----CCCccccCCCCc
Q 040638 358 D----RLDPALLRPGRM 370 (419)
Q Consensus 358 ~----~LdpALlrpGR~ 370 (419)
+ .+++||++ ||
T Consensus 125 ~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 125 DKGRKELSPALLD--RF 139 (139)
T ss_dssp T--TTTTCHHHHT--T-
T ss_pred CCCcCcCCHHHHh--hC
Confidence 8 99999999 87
No 128
>PRK05642 DNA replication initiation factor; Validated
Probab=99.28 E-value=3.7e-11 Score=113.15 Aligned_cols=172 Identities=18% Similarity=0.168 Sum_probs=103.6
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccc-cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAW-KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~-~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~ 262 (419)
...+||+.+... ....+..+..+.... ..| .+.++||||+|||||+|++|+++++ +..+..++...+
T Consensus 14 ~~~tfdnF~~~~--~~~a~~~~~~~~~~~-------~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~ 84 (234)
T PRK05642 14 DDATFANYYPGA--NAAALGYVERLCEAD-------AGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAEL 84 (234)
T ss_pred CcccccccCcCC--hHHHHHHHHHHhhcc-------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHH
Confidence 345899987322 233444444433211 122 3568999999999999999999875 456666666544
Q ss_pred CChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Q 040638 263 EGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWS 342 (419)
Q Consensus 263 ~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s 342 (419)
... ...++....+--+++|||++..... ..+...|.+.++.+..
T Consensus 85 ~~~--~~~~~~~~~~~d~LiiDDi~~~~~~----------------------------------~~~~~~Lf~l~n~~~~ 128 (234)
T PRK05642 85 LDR--GPELLDNLEQYELVCLDDLDVIAGK----------------------------------ADWEEALFHLFNRLRD 128 (234)
T ss_pred Hhh--hHHHHHhhhhCCEEEEechhhhcCC----------------------------------hHHHHHHHHHHHHHHh
Confidence 211 1223333344468999999966430 1112234455554432
Q ss_pred CCCCCEEEEEecCCCCC---CCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 343 SSGDERIIVFTTNHKDR---LDPALLRPGRM--DVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 343 ~~g~~~iiV~tTN~~~~---LdpALlrpGR~--d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
. +..+++.++..|.. +.|.|.+ |+ ...+.+..|+.+++..+++......+..+.+++...+
T Consensus 129 ~--g~~ilits~~~p~~l~~~~~~L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L 194 (234)
T PRK05642 129 S--GRRLLLAASKSPRELPIKLPDLKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFI 194 (234)
T ss_pred c--CCEEEEeCCCCHHHcCccCccHHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 2 23444444444543 3689998 77 5778889999999999999655544555666655443
No 129
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.28 E-value=1.6e-11 Score=125.90 Aligned_cols=178 Identities=18% Similarity=0.233 Sum_probs=106.3
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEe
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLEL 259 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l 259 (419)
+.+.-||++.+..+.-... ...+..+...+ | +...++||||||||||+|++|+|+++ +..+..++.
T Consensus 98 l~~~~tFdnFv~g~~n~~a-~~~~~~~~~~~------~--~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFA-YHAALEVAKNP------G--RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CCCCCcccccccCCchHHH-HHHHHHHHhCc------C--CCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 3344589998743433322 22233333222 1 13459999999999999999999987 345666665
Q ss_pred cccCC-------hHHHHHHHHHc-cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 260 SSVEG-------NKHLRKVLIAT-ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 260 ~~~~~-------~~~l~~l~~~~-~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
..+.. ...+..+.... .++.+|+|||++.+.+. ..+..
T Consensus 169 ~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~----------------------------------~~~q~ 214 (440)
T PRK14088 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK----------------------------------TGVQT 214 (440)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc----------------------------------HHHHH
Confidence 43210 01111111222 25789999999977541 01112
Q ss_pred hHHHHhcCcccCCCCCEEEEEec-CCCCC---CCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 332 GLLNFTNGLWSSSGDERIIVFTT-NHKDR---LDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 332 ~Ll~~ldg~~s~~g~~~iiV~tT-N~~~~---LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
.|+..++.+... + ..+|+|+ +.|.. +++.|.++-.....+.+..|+.+.+..|++..+......+.+++...+
T Consensus 215 elf~~~n~l~~~-~--k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~I 291 (440)
T PRK14088 215 ELFHTFNELHDS-G--KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFV 291 (440)
T ss_pred HHHHHHHHHHHc-C--CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 233444444332 2 2455555 55554 467788722235678899999999999999998876677777765554
Q ss_pred h
Q 040638 408 E 408 (419)
Q Consensus 408 ~ 408 (419)
.
T Consensus 292 a 292 (440)
T PRK14088 292 A 292 (440)
T ss_pred H
Confidence 3
No 130
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.27 E-value=2.7e-11 Score=116.80 Aligned_cols=152 Identities=20% Similarity=0.266 Sum_probs=100.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE-EEEEecccC-
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV-YDLELSSVE- 263 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v-~~l~l~~~~- 263 (419)
-+|+++++.+|++++..+ ...|...+... --..++|+||||||||||++.||+-.+-+- ..++++...
T Consensus 132 mRPktL~dyvGQ~hlv~q-~gllrs~ieq~---------~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a 201 (554)
T KOG2028|consen 132 MRPKTLDDYVGQSHLVGQ-DGLLRSLIEQN---------RIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA 201 (554)
T ss_pred cCcchHHHhcchhhhcCc-chHHHHHHHcC---------CCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc
Confidence 468899999998766544 12222222111 123599999999999999999999887663 344555543
Q ss_pred ChHHHHHHHHHc-------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 GNKHLRKVLIAT-------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 ~~~~l~~l~~~~-------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
...++|.+|.+. .++.|||||||+.+-. .. +.+ ||-.
T Consensus 202 ~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk----sQ-----------------------------QD~---fLP~ 245 (554)
T KOG2028|consen 202 KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK----SQ-----------------------------QDT---FLPH 245 (554)
T ss_pred chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh----hh-----------------------------hhc---ccce
Confidence 346788888665 4689999999996522 11 111 1111
Q ss_pred hcCcccCCCCCEEEEEe-c-CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 337 TNGLWSSSGDERIIVFT-T-NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~t-T-N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
. ..|.+++|.+ | |..-.|..||+. |+ ..+.+...+.+....|+.+-.
T Consensus 246 ---V---E~G~I~lIGATTENPSFqln~aLlS--RC-~VfvLekL~~n~v~~iL~rai 294 (554)
T KOG2028|consen 246 ---V---ENGDITLIGATTENPSFQLNAALLS--RC-RVFVLEKLPVNAVVTILMRAI 294 (554)
T ss_pred ---e---ccCceEEEecccCCCccchhHHHHh--cc-ceeEeccCCHHHHHHHHHHHH
Confidence 1 1244667764 4 566689999998 65 447788888999888888744
No 131
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.27 E-value=1.7e-11 Score=125.54 Aligned_cols=142 Identities=18% Similarity=0.262 Sum_probs=94.1
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCC-------hHHHHHHHHHccCCeEEEEecCcccccccchh
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEG-------NKHLRKVLIATENKSILVVEDIDCCTELQDRS 296 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~-------~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~ 296 (419)
++++||||||+|||+|++|+|+++ +..+..+....+.. +.....+-....+..+|+||||+.+.+.
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k---- 217 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGK---- 217 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCC----
Confidence 469999999999999999999987 56777666543311 0011111122356789999999976430
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCC-C---CCCCccccCCCCcc-
Q 040638 297 AQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNH-K---DRLDPALLRPGRMD- 371 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~-~---~~LdpALlrpGR~d- 371 (419)
..+...|...++.+... + ..+|+|+|. | ..++++|.+ ||.
T Consensus 218 ------------------------------~~~qeelf~l~N~l~~~-~--k~IIlts~~~p~~l~~l~~rL~S--R~~~ 262 (445)
T PRK12422 218 ------------------------------GATQEEFFHTFNSLHTE-G--KLIVISSTCAPQDLKAMEERLIS--RFEW 262 (445)
T ss_pred ------------------------------hhhHHHHHHHHHHHHHC-C--CcEEEecCCCHHHHhhhHHHHHh--hhcC
Confidence 01112233333333221 2 356666664 4 356899998 885
Q ss_pred -eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 372 -VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 372 -~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
..+.+..|+.+++..+++..+...+..+.+++...+
T Consensus 263 Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~l 299 (445)
T PRK12422 263 GIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFL 299 (445)
T ss_pred CeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 899999999999999999998877666766665533
No 132
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.4e-11 Score=125.63 Aligned_cols=155 Identities=28% Similarity=0.393 Sum_probs=120.0
Q ss_pred hhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc------CChHHHHHHHHHc--cCCeEEEE
Q 040638 212 LKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV------EGNKHLRKVLIAT--ENKSILVV 283 (419)
Q Consensus 212 ~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~------~~~~~l~~l~~~~--~~~sIlvi 283 (419)
+..++.++..+..+++|++++||||||||++++++|+. +.....++...+ .....++.++..+ ..|+|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii~~ 82 (494)
T COG0464 4 LKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSIIFI 82 (494)
T ss_pred ccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeEee
Confidence 45667888899999999999999999999999999998 443333333222 2345566666554 45799999
Q ss_pred ecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCcc
Q 040638 284 EDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPA 363 (419)
Q Consensus 284 ddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpA 363 (419)
|++|.+.+.+.... . .......++++..+|++- .+. .+++..||.+..+|++
T Consensus 83 d~~~~~~~~~~~~~---~----------------------~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a 134 (494)
T COG0464 83 DEIDALAPKRSSDQ---G----------------------EVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPA 134 (494)
T ss_pred chhhhcccCccccc---c----------------------chhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChh
Confidence 99999987444310 0 112566778999999996 455 7777899999999999
Q ss_pred ccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 364 LLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 364 LlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
+.+||||+..++++.|+.+.+.++........
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~ 166 (494)
T COG0464 135 KRRPGRFDREIEVNLPDEAGRLEILQIHTRLM 166 (494)
T ss_pred HhCccccceeeecCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999988888876543
No 133
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.27 E-value=5.3e-11 Score=129.51 Aligned_cols=155 Identities=17% Similarity=0.259 Sum_probs=106.2
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccc---cCc-eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHH-
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAW---KRG-YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKH- 267 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~rG-~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~- 267 (419)
.++|+++.++.|.+.+... +.|+.. +.| +||+||||||||+|++++|..++.+++.++++.......
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~--------~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~ 526 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRS--------RAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTV 526 (731)
T ss_pred ceeCcHHHHHHHHHHHHHH--------hcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccH
Confidence 4667777777776655432 223221 333 899999999999999999999999999998876532111
Q ss_pred ------------------HHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 268 ------------------LRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 268 ------------------l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
+.+.+. ....+|++|||||.+-+ ..
T Consensus 527 ~~lig~~~gyvg~~~~~~l~~~~~-~~p~~VvllDEieka~~------------------------------------~~ 569 (731)
T TIGR02639 527 SRLIGAPPGYVGFEQGGLLTEAVR-KHPHCVLLLDEIEKAHP------------------------------------DI 569 (731)
T ss_pred HHHhcCCCCCcccchhhHHHHHHH-hCCCeEEEEechhhcCH------------------------------------HH
Confidence 222222 23468999999995522 12
Q ss_pred HHhHHHHhcCcccC-------CCCCEEEEEecCCCC-------------------------CCCccccCCCCcceEEEeC
Q 040638 330 TFGLLNFTNGLWSS-------SGDERIIVFTTNHKD-------------------------RLDPALLRPGRMDVHIHMS 377 (419)
Q Consensus 330 ls~Ll~~ldg~~s~-------~g~~~iiV~tTN~~~-------------------------~LdpALlrpGR~d~~I~~~ 377 (419)
...|+..+|.-.-. .-.+.++|+|||.-. .+.|.++. |||..|.|.
T Consensus 570 ~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~ 647 (731)
T TIGR02639 570 YNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRN--RLDAIIHFN 647 (731)
T ss_pred HHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHh--cCCeEEEcC
Confidence 33466666543111 113578999998531 24566765 999999999
Q ss_pred CCCHHHHHHHHHHhhCC
Q 040638 378 YCTLCGFKILASNYLGI 394 (419)
Q Consensus 378 ~~~~~~~~~l~~~~l~~ 394 (419)
..+.++..+|++..+..
T Consensus 648 pLs~e~l~~Iv~~~L~~ 664 (731)
T TIGR02639 648 PLSEEVLEKIVQKFVDE 664 (731)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999999863
No 134
>PHA02244 ATPase-like protein
Probab=99.26 E-value=1.3e-10 Score=114.48 Aligned_cols=117 Identities=17% Similarity=0.251 Sum_probs=79.1
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc----c----CChHHHH--HHHHHccCCeEEEEecCcccccccchh
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS----V----EGNKHLR--KVLIATENKSILVVEDIDCCTELQDRS 296 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~----~----~~~~~l~--~l~~~~~~~sIlviddiD~~~~~~~~~ 296 (419)
..+||+||||||||++|++||..++.+++.++... + .....+. .++....+..+++|||||.+..
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p----- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIP----- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCH-----
Confidence 45999999999999999999999999998776320 0 0011111 2333356789999999996632
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc--------CcccCCCCCEEEEEecCCC-----------
Q 040638 297 AQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN--------GLWSSSGDERIIVFTTNHK----------- 357 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld--------g~~s~~g~~~iiV~tTN~~----------- 357 (419)
.++..|...++ +... ......+|+|+|.+
T Consensus 195 -------------------------------~vq~~L~~lLd~r~l~l~g~~i~-~h~~FRlIATsN~~~~G~~~~y~G~ 242 (383)
T PHA02244 195 -------------------------------EALIIINSAIANKFFDFADERVT-AHEDFRVISAGNTLGKGADHIYVAR 242 (383)
T ss_pred -------------------------------HHHHHHHHHhccCeEEecCcEEe-cCCCEEEEEeeCCCccCcccccCCC
Confidence 12222333332 2211 22456888999973
Q ss_pred CCCCccccCCCCcceEEEeCCCCHHH
Q 040638 358 DRLDPALLRPGRMDVHIHMSYCTLCG 383 (419)
Q Consensus 358 ~~LdpALlrpGR~d~~I~~~~~~~~~ 383 (419)
..|++|++. || .+|+++||+.-+
T Consensus 243 k~L~~AllD--RF-v~I~~dyp~~~E 265 (383)
T PHA02244 243 NKIDGATLD--RF-APIEFDYDEKIE 265 (383)
T ss_pred cccCHHHHh--hc-EEeeCCCCcHHH
Confidence 578999999 99 679999998433
No 135
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.25 E-value=1.6e-11 Score=120.85 Aligned_cols=157 Identities=21% Similarity=0.205 Sum_probs=100.9
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC-------CcE--EEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-------FDV--YDL 257 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------~~v--~~l 257 (419)
.|-+|++++|.++.|+.+.-.+... -..++||+||||||||++++++|+.+. .++ ..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~-------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP-------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc-------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 4668999999999998775432110 124699999999999999999999983 111 000
Q ss_pred Eec---------c-------------------cCChHHHHHHHH-----------HccCCeEEEEecCcccccccchhhh
Q 040638 258 ELS---------S-------------------VEGNKHLRKVLI-----------ATENKSILVVEDIDCCTELQDRSAQ 298 (419)
Q Consensus 258 ~l~---------~-------------------~~~~~~l~~l~~-----------~~~~~sIlviddiD~~~~~~~~~~~ 298 (419)
... . +-+.-.+...+. ......+|++|||+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~-------- 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE-------- 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------
Confidence 000 0 001111111110 01234699999999653
Q ss_pred ccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc---------cCCCCCEEEEEecCCCC-CCCccccCCC
Q 040638 299 ARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---------SSSGDERIIVFTTNHKD-RLDPALLRPG 368 (419)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---------s~~g~~~iiV~tTN~~~-~LdpALlrpG 368 (419)
..+++.|++.|+.-. .......++++|+|..+ .++++|+.
T Consensus 142 ----------------------------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLld-- 191 (334)
T PRK13407 142 ----------------------------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLD-- 191 (334)
T ss_pred ----------------------------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHh--
Confidence 234455666664321 11223467777888655 68999999
Q ss_pred CcceEEEeCCCCH-HHHHHHHHHhhCC
Q 040638 369 RMDVHIHMSYCTL-CGFKILASNYLGI 394 (419)
Q Consensus 369 R~d~~I~~~~~~~-~~~~~l~~~~l~~ 394 (419)
||..+|.+++|.. +++.+++++....
T Consensus 192 RF~~~v~v~~~~~~~e~~~il~~~~~~ 218 (334)
T PRK13407 192 RFGLSVEVRSPRDVETRVEVIRRRDAY 218 (334)
T ss_pred hcceEEEcCCCCcHHHHHHHHHHhhcc
Confidence 9999999999987 8999999986543
No 136
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=1.7e-10 Score=115.21 Aligned_cols=153 Identities=17% Similarity=0.198 Sum_probs=108.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
.+|++|++|+|.+++++.+.+.+.. ...+.++||+||+|+||++++.++|+.+-.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~------------~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~ 80 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRS------------GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPP 80 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHc------------CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccc
Confidence 6899999999999999888765533 123567999999999999999999998721
Q ss_pred ---------------------cEEEEEec--ccC-------ChHHHHHHHHHc------cCCeEEEEecCcccccccchh
Q 040638 253 ---------------------DVYDLELS--SVE-------GNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRS 296 (419)
Q Consensus 253 ---------------------~v~~l~l~--~~~-------~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~ 296 (419)
+++.+... .-. .-..+|++.... ..+-|++|||+|.+-
T Consensus 81 ~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~------ 154 (365)
T PRK07471 81 TSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN------ 154 (365)
T ss_pred ccccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC------
Confidence 12222210 000 113344443322 246788899988652
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEe
Q 040638 297 AQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHM 376 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~ 376 (419)
......||..+... .+..++|++|+.++.+.|.+++ |+ .+|.+
T Consensus 155 ------------------------------~~aanaLLK~LEep----p~~~~~IL~t~~~~~llpti~S--Rc-~~i~l 197 (365)
T PRK07471 155 ------------------------------ANAANALLKVLEEP----PARSLFLLVSHAPARLLPTIRS--RC-RKLRL 197 (365)
T ss_pred ------------------------------HHHHHHHHHHHhcC----CCCeEEEEEECCchhchHHhhc--cc-eEEEC
Confidence 23344577777654 2457888999999999999887 76 67999
Q ss_pred CCCCHHHHHHHHHHhhC
Q 040638 377 SYCTLCGFKILASNYLG 393 (419)
Q Consensus 377 ~~~~~~~~~~l~~~~l~ 393 (419)
+.++.++...++.....
T Consensus 198 ~~l~~~~i~~~L~~~~~ 214 (365)
T PRK07471 198 RPLAPEDVIDALAAAGP 214 (365)
T ss_pred CCCCHHHHHHHHHHhcc
Confidence 99999999988887654
No 137
>PRK06620 hypothetical protein; Validated
Probab=99.24 E-value=1.3e-10 Score=108.01 Aligned_cols=157 Identities=17% Similarity=0.220 Sum_probs=96.5
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccc-cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAW-KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHL 268 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~-~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l 268 (419)
+|++++..+.-.. ....+...... .+..+ .+.++||||||||||+|++++++..+..+. .. .....
T Consensus 14 tfd~Fvvg~~N~~-a~~~~~~~~~~------~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~--~~~~~-- 80 (214)
T PRK06620 14 HPDEFIVSSSNDQ-AYNIIKNWQCG------FGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYII--KD--IFFNE-- 80 (214)
T ss_pred CchhhEecccHHH-HHHHHHHHHHc------cccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEc--ch--hhhch--
Confidence 8999775443322 23333333221 12222 367999999999999999999998875322 11 11011
Q ss_pred HHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCE
Q 040638 269 RKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDER 348 (419)
Q Consensus 269 ~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~ 348 (419)
.. .....+++|||||.+. ...+..+.|.+..- +..
T Consensus 81 -~~---~~~~d~lliDdi~~~~------------------------------------~~~lf~l~N~~~e~-----g~~ 115 (214)
T PRK06620 81 -EI---LEKYNAFIIEDIENWQ------------------------------------EPALLHIFNIINEK-----QKY 115 (214)
T ss_pred -hH---HhcCCEEEEeccccch------------------------------------HHHHHHHHHHHHhc-----CCE
Confidence 11 1245789999999331 12333444444321 335
Q ss_pred EEEEecCCCCC--CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 349 IIVFTTNHKDR--LDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 349 iiV~tTN~~~~--LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
+++.++..|.. + |+|+. |+. ..+.+..|+.+.+..+++......+..+.+++...+
T Consensus 116 ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L 175 (214)
T PRK06620 116 LLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFL 175 (214)
T ss_pred EEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 55555555543 5 88888 775 368999999999999999888766666767665544
No 138
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.22 E-value=1.6e-10 Score=114.48 Aligned_cols=130 Identities=23% Similarity=0.195 Sum_probs=88.5
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHH--HHHH----------ccC---C---eEEEEecCc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRK--VLIA----------TEN---K---SILVVEDID 287 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~--l~~~----------~~~---~---sIlviddiD 287 (419)
.+.+||-||||||||++++++|..++.++..+.++.--..+++-. .+.. ... . +|+++|||+
T Consensus 43 ~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEIn 122 (329)
T COG0714 43 GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEIN 122 (329)
T ss_pred CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccc
Confidence 445999999999999999999999999999999986533222211 1110 011 1 399999999
Q ss_pred ccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC---C-----CCCEEEEEecC----
Q 040638 288 CCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS---S-----GDERIIVFTTN---- 355 (419)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~---~-----g~~~iiV~tTN---- 355 (419)
... ..+.+.|+..|+...-. . ....++|+|+|
T Consensus 123 ra~------------------------------------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~ 166 (329)
T COG0714 123 RAP------------------------------------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEY 166 (329)
T ss_pred cCC------------------------------------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcccc
Confidence 553 23455566666542111 1 13457778889
Q ss_pred -CCCCCCccccCCCCcceEEEeCCC-CHHHHHHHHHHhhC
Q 040638 356 -HKDRLDPALLRPGRMDVHIHMSYC-TLCGFKILASNYLG 393 (419)
Q Consensus 356 -~~~~LdpALlrpGR~d~~I~~~~~-~~~~~~~l~~~~l~ 393 (419)
....|++|+++ ||-..++++|| ..++...+......
T Consensus 167 ~g~~~l~eA~ld--Rf~~~~~v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 167 EGTYPLPEALLD--RFLLRIYVDYPDSEEEERIILARVGG 204 (329)
T ss_pred CCCcCCCHHHHh--hEEEEEecCCCCchHHHHHHHHhCcc
Confidence 44568999999 99999999999 55555555555554
No 139
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=6.4e-10 Score=110.60 Aligned_cols=151 Identities=17% Similarity=0.176 Sum_probs=104.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD------------ 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~------------ 253 (419)
.||+.|+.|+|.+++++.+...+..- ..+..+||+||+|+|||+++..+|+.+...
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~g------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~ 84 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREG------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLAD 84 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcC------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCC
Confidence 69999999999998888876544321 234569999999999999999999988431
Q ss_pred ------------------EEEEEecc-cC--------ChHHHHHHH---HHc---cCCeEEEEecCcccccccchhhhcc
Q 040638 254 ------------------VYDLELSS-VE--------GNKHLRKVL---IAT---ENKSILVVEDIDCCTELQDRSAQAR 300 (419)
Q Consensus 254 ------------------v~~l~l~~-~~--------~~~~l~~l~---~~~---~~~sIlviddiD~~~~~~~~~~~~~ 300 (419)
++.+.... .. .-..++.+. ... ...-|++|||+|.+-
T Consensus 85 ~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~---------- 154 (351)
T PRK09112 85 PDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN---------- 154 (351)
T ss_pred CCCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC----------
Confidence 11111000 00 012333332 221 234688888888662
Q ss_pred CCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCC
Q 040638 301 TASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCT 380 (419)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~ 380 (419)
......||..++.. ....++|+.|+.++.+.|.++. |+ .++.++.++
T Consensus 155 --------------------------~~aanaLLk~LEEp----p~~~~fiLit~~~~~llptIrS--Rc-~~i~l~pl~ 201 (351)
T PRK09112 155 --------------------------RNAANAILKTLEEP----PARALFILISHSSGRLLPTIRS--RC-QPISLKPLD 201 (351)
T ss_pred --------------------------HHHHHHHHHHHhcC----CCCceEEEEECChhhccHHHHh--hc-cEEEecCCC
Confidence 12334477777664 2346777778889999999988 87 689999999
Q ss_pred HHHHHHHHHHh
Q 040638 381 LCGFKILASNY 391 (419)
Q Consensus 381 ~~~~~~l~~~~ 391 (419)
.++...++...
T Consensus 202 ~~~~~~~L~~~ 212 (351)
T PRK09112 202 DDELKKALSHL 212 (351)
T ss_pred HHHHHHHHHHh
Confidence 99999999874
No 140
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=2.9e-10 Score=115.17 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=101.0
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecccCCh
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSVEGN 265 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~~~~ 265 (419)
.+.+++-++..++|...+...+.+ ..+..+++|||||||||++++.+++.+ +..+..+++....+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~~~~~~---------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~ 99 (394)
T PRK00411 29 PENLPHREEQIEELAFALRPALRG---------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR 99 (394)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence 355667666667776666544422 113458999999999999999999987 466777777543211
Q ss_pred -----------------------HHH-HHHH---HHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHH
Q 040638 266 -----------------------KHL-RKVL---IATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIR 318 (419)
Q Consensus 266 -----------------------~~l-~~l~---~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (419)
..+ ..+. .....+.||+|||+|.+.. .. .
T Consensus 100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~--~~-~--------------------- 155 (394)
T PRK00411 100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFE--KE-G--------------------- 155 (394)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhc--cC-C---------------------
Confidence 111 1111 1123457999999997752 00 0
Q ss_pred HHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCc-ceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 319 NLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRM-DVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 319 ~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~-d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
...+..|+..++.. .+....+|+++|.. +.+++.+.+ |+ ...|.++.++.++...+++..+..
T Consensus 156 --------~~~l~~l~~~~~~~---~~~~v~vI~i~~~~~~~~~l~~~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~ 222 (394)
T PRK00411 156 --------NDVLYSLLRAHEEY---PGARIGVIGISSDLTFLYILDPRVKS--VFRPEEIYFPPYTADEIFDILKDRVEE 222 (394)
T ss_pred --------chHHHHHHHhhhcc---CCCeEEEEEEECCcchhhhcCHHHHh--cCCcceeecCCCCHHHHHHHHHHHHHh
Confidence 12334444444433 12246688888865 357787765 55 367899999999999999988753
No 141
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.20 E-value=5.2e-10 Score=101.69 Aligned_cols=142 Identities=20% Similarity=0.254 Sum_probs=96.7
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcCC------------------------cEEEEEeccc-CChHHHHHHHHHc----
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLHF------------------------DVYDLELSSV-EGNKHLRKVLIAT---- 275 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------------------~v~~l~l~~~-~~~~~l~~l~~~~---- 275 (419)
.+..||||||||+|||++++++|+.+.. ++..+....- -+-+.++.+....
T Consensus 13 ~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~ 92 (188)
T TIGR00678 13 LAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTP 92 (188)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCc
Confidence 3556999999999999999999998743 2333332211 1234555555433
Q ss_pred --cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEe
Q 040638 276 --ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353 (419)
Q Consensus 276 --~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~t 353 (419)
..+.|++|||+|.+.. .....|+..++.. ....++|++
T Consensus 93 ~~~~~kviiide~~~l~~------------------------------------~~~~~Ll~~le~~----~~~~~~il~ 132 (188)
T TIGR00678 93 QESGRRVVIIEDAERMNE------------------------------------AAANALLKTLEEP----PPNTLFILI 132 (188)
T ss_pred ccCCeEEEEEechhhhCH------------------------------------HHHHHHHHHhcCC----CCCeEEEEE
Confidence 2467999999987632 1234477777664 234678888
Q ss_pred cCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcCCCCc
Q 040638 354 TNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQTKVTP 414 (419)
Q Consensus 354 TN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~tp 414 (419)
||.+..|.+++.+ |+ ..++++.++.++...++... +. -.+.++.+++..+.+|
T Consensus 133 ~~~~~~l~~~i~s--r~-~~~~~~~~~~~~~~~~l~~~-gi----~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 133 TPSPEKLLPTIRS--RC-QVLPFPPLSEEALLQWLIRQ-GI----SEEAAELLLALAGGSP 185 (188)
T ss_pred ECChHhChHHHHh--hc-EEeeCCCCCHHHHHHHHHHc-CC----CHHHHHHHHHHcCCCc
Confidence 8888999999998 66 57999999999998888886 21 1244555565554443
No 142
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.19 E-value=3.1e-10 Score=125.05 Aligned_cols=181 Identities=14% Similarity=0.217 Sum_probs=116.2
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccC-ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChH
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKR-GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK 266 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r-G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~ 266 (419)
++.++|.+...+.|...+.....+-. .- .-|. .+||+||||||||++|++||+.+ +..++.++++.+....
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~---~~--~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~ 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLS---DP--NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKH 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhccc---CC--CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhh
Confidence 45688888888888777765431100 00 0122 38999999999999999999987 3457777776653322
Q ss_pred HHHHHH---------------H---HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 267 HLRKVL---------------I---ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 267 ~l~~l~---------------~---~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
...+++ . .....++|+|||++.+-. .
T Consensus 642 ~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~------------------------------------~ 685 (857)
T PRK10865 642 SVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHP------------------------------------D 685 (857)
T ss_pred hHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCH------------------------------------H
Confidence 222222 1 112348999999985521 2
Q ss_pred HHHhHHHHhcCc-ccC------CCCCEEEEEecCCC-------------------------CCCCccccCCCCcceEEEe
Q 040638 329 ETFGLLNFTNGL-WSS------SGDERIIVFTTNHK-------------------------DRLDPALLRPGRMDVHIHM 376 (419)
Q Consensus 329 ~ls~Ll~~ldg~-~s~------~g~~~iiV~tTN~~-------------------------~~LdpALlrpGR~d~~I~~ 376 (419)
....|++.+|.- ... .-...+||+|||.. ..+.|+|+. |+|..+.+
T Consensus 686 v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF 763 (857)
T PRK10865 686 VFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVF 763 (857)
T ss_pred HHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEec
Confidence 333455555422 111 11245789999962 134578887 99999999
Q ss_pred CCCCHHHHHHHHHHhhCCC-------C--CCChHHHHHHHhcCCCCc
Q 040638 377 SYCTLCGFKILASNYLGIT-------E--HPLFSEVEELIEQTKVTP 414 (419)
Q Consensus 377 ~~~~~~~~~~l~~~~l~~~-------~--~~l~~~i~~l~~~~~~tp 414 (419)
..++.+....|++.++... + ..+.+++...+.+.+++|
T Consensus 764 ~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~ 810 (857)
T PRK10865 764 HPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDP 810 (857)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCc
Confidence 9999999999999888641 1 234556666665555654
No 143
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.19 E-value=4.7e-11 Score=117.90 Aligned_cols=153 Identities=19% Similarity=0.237 Sum_probs=99.8
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc-------EE-------
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD-------VY------- 255 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~-------v~------- 255 (419)
+|+.++|+++.|..++..+..+ ...|+||.||+|||||+++++++..+... +.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p-------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~ 81 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP-------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPE 81 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC-------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChh
Confidence 7999999999999997665442 13579999999999999999998887420 00
Q ss_pred ---------------------EEEecccC---ChH------HHHHHHHH-----------ccCCeEEEEecCcccccccc
Q 040638 256 ---------------------DLELSSVE---GNK------HLRKVLIA-----------TENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 256 ---------------------~l~l~~~~---~~~------~l~~l~~~-----------~~~~sIlviddiD~~~~~~~ 294 (419)
.+.+..+. ++. ++...+.. ....++|++|||+.+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~--- 158 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDD--- 158 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCH---
Confidence 00000000 111 11222111 12357999999986643
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC---------cccCCCCCEEEEEecCCCC-CCCccc
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG---------LWSSSGDERIIVFTTNHKD-RLDPAL 364 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg---------~~s~~g~~~iiV~tTN~~~-~LdpAL 364 (419)
.+.+.|+..|+. .........++|+|.|..+ .+.++|
T Consensus 159 ---------------------------------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~L 205 (350)
T CHL00081 159 ---------------------------------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQL 205 (350)
T ss_pred ---------------------------------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHH
Confidence 233446666543 2111222356666667555 699999
Q ss_pred cCCCCcceEEEeCCCC-HHHHHHHHHHhhC
Q 040638 365 LRPGRMDVHIHMSYCT-LCGFKILASNYLG 393 (419)
Q Consensus 365 lrpGR~d~~I~~~~~~-~~~~~~l~~~~l~ 393 (419)
+. ||.++|.+++|+ .+.+.+|++....
T Consensus 206 ld--Rf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 206 LD--RFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HH--HhCceeecCCCCChHHHHHHHHhhhc
Confidence 99 999999999998 6999999988654
No 144
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.17 E-value=1.3e-10 Score=114.76 Aligned_cols=153 Identities=21% Similarity=0.279 Sum_probs=98.8
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------cEE-------
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-------DVY------- 255 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-------~v~------- 255 (419)
.|..++|.+++|..++-.+..+. ..+++|.||||+||||+++++++.+.. ++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~-------------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPK-------------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPE 68 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCC-------------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCcc
Confidence 48899999999998865554321 346999999999999999999988732 110
Q ss_pred ----------E--------------EEec------ccCChHHHHHHH-----------HHccCCeEEEEecCcccccccc
Q 040638 256 ----------D--------------LELS------SVEGNKHLRKVL-----------IATENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 256 ----------~--------------l~l~------~~~~~~~l~~l~-----------~~~~~~sIlviddiD~~~~~~~ 294 (419)
. .++. .+.+.-.+...+ ....++.++++|||+.+..
T Consensus 69 ~~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~--- 145 (337)
T TIGR02030 69 MMCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLED--- 145 (337)
T ss_pred ccChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCH---
Confidence 0 0000 011111222221 1113458999999997532
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC---------cccCCCCCEEEEEecCCCC-CCCccc
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG---------LWSSSGDERIIVFTTNHKD-RLDPAL 364 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg---------~~s~~g~~~iiV~tTN~~~-~LdpAL 364 (419)
.+.+.|++.|+. .........++|+|+|..+ .+.++|
T Consensus 146 ---------------------------------~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~L 192 (337)
T TIGR02030 146 ---------------------------------HLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQL 192 (337)
T ss_pred ---------------------------------HHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHH
Confidence 233445555532 2111223356667777555 699999
Q ss_pred cCCCCcceEEEeCCCCH-HHHHHHHHHhhC
Q 040638 365 LRPGRMDVHIHMSYCTL-CGFKILASNYLG 393 (419)
Q Consensus 365 lrpGR~d~~I~~~~~~~-~~~~~l~~~~l~ 393 (419)
+. ||.+++.+++|.. +++.+|+++...
T Consensus 193 ld--Rf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 193 LD--RFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred Hh--hcceEEECCCCCCHHHHHHHHHhhhh
Confidence 99 9999999999976 888999988554
No 145
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=2.5e-10 Score=117.35 Aligned_cols=174 Identities=14% Similarity=0.238 Sum_probs=106.8
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEeccc
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSV 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~ 262 (419)
+.||++++..+.-. .....+......+ |.. .++++||||+|||||+|++|+++++ +..+..+....+
T Consensus 111 ~~tFdnFv~g~~n~-~A~~aa~~~a~~~------~~~-~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f 182 (450)
T PRK14087 111 ENTFENFVIGSSNE-QAFIAVQTVSKNP------GIS-YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEF 182 (450)
T ss_pred ccchhcccCCCcHH-HHHHHHHHHHhCc------Ccc-cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH
Confidence 45888876444322 2223333333222 222 2469999999999999999999976 356666665443
Q ss_pred CCh---------HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 263 EGN---------KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 263 ~~~---------~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
... ..+..+........+|+|||++.+... ..+...|
T Consensus 183 ~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k----------------------------------~~~~e~l 228 (450)
T PRK14087 183 ARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK----------------------------------EKTNEIF 228 (450)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccCC----------------------------------HHHHHHH
Confidence 110 122223333456779999999966430 1222334
Q ss_pred HHHhcCcccCCCCCEEEEEecCC-CC---CCCccccCCCCc--ceEEEeCCCCHHHHHHHHHHhhCCCCC--CChHHHHH
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNH-KD---RLDPALLRPGRM--DVHIHMSYCTLCGFKILASNYLGITEH--PLFSEVEE 405 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~-~~---~LdpALlrpGR~--d~~I~~~~~~~~~~~~l~~~~l~~~~~--~l~~~i~~ 405 (419)
...++.+... + ..+|+|+|. |+ .+++.|.. || ...+.+..|+.+++..++++.+...+. .+.+++..
T Consensus 229 f~l~N~~~~~-~--k~iIltsd~~P~~l~~l~~rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~ 303 (450)
T PRK14087 229 FTIFNNFIEN-D--KQLFFSSDKSPELLNGFDNRLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAIN 303 (450)
T ss_pred HHHHHHHHHc-C--CcEEEECCCCHHHHhhccHHHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHH
Confidence 4444444332 2 356677764 33 45788888 76 577889999999999999999876542 45566554
Q ss_pred HHh
Q 040638 406 LIE 408 (419)
Q Consensus 406 l~~ 408 (419)
.+.
T Consensus 304 ~Ia 306 (450)
T PRK14087 304 FIS 306 (450)
T ss_pred HHH
Confidence 443
No 146
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.16 E-value=6.9e-10 Score=118.29 Aligned_cols=170 Identities=18% Similarity=0.192 Sum_probs=107.5
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEEEEecc
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYDLELSS 261 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~l~l~~ 261 (419)
+.|.+-++..++|...|...+.+. .+...++++||||||||++++.+.+.| .+.++.++|..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgs--------gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQS--------GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcC--------CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 456666666666666665554321 112224699999999999999998877 25677888855
Q ss_pred cCCh-----------------------HHHHHHHHHc----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 262 VEGN-----------------------KHLRKVLIAT----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 262 ~~~~-----------------------~~l~~l~~~~----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
+... ..+..+|... ....||+|||||.+...
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------------------- 884 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------------------- 884 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc----------------------
Confidence 4221 2233344332 12469999999988641
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCC---CCCCCccccCCCCcce-EEEeCCCCHHHHHHHHHH
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNH---KDRLDPALLRPGRMDV-HIHMSYCTLCGFKILASN 390 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~---~~~LdpALlrpGR~d~-~I~~~~~~~~~~~~l~~~ 390 (419)
.+.. |+++++.... .+..+++|+.+|. ++.|+|.+.. ||.. .|.|+.++.+++..|++.
T Consensus 885 -----------~QDV---LYnLFR~~~~-s~SKLiLIGISNdlDLperLdPRLRS--RLg~eeIvF~PYTaEQL~dILk~ 947 (1164)
T PTZ00112 885 -----------TQKV---LFTLFDWPTK-INSKLVLIAISNTMDLPERLIPRCRS--RLAFGRLVFSPYKGDEIEKIIKE 947 (1164)
T ss_pred -----------HHHH---HHHHHHHhhc-cCCeEEEEEecCchhcchhhhhhhhh--ccccccccCCCCCHHHHHHHHHH
Confidence 0112 3333332221 2445778888885 6678888887 5543 488899999999999999
Q ss_pred hhCCCCCCChHHHHHHHh
Q 040638 391 YLGITEHPLFSEVEELIE 408 (419)
Q Consensus 391 ~l~~~~~~l~~~i~~l~~ 408 (419)
-+......+.+++-.++.
T Consensus 948 RAe~A~gVLdDdAIELIA 965 (1164)
T PTZ00112 948 RLENCKEIIDHTAIQLCA 965 (1164)
T ss_pred HHHhCCCCCCHHHHHHHH
Confidence 887533334455544443
No 147
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.16 E-value=2.8e-10 Score=113.75 Aligned_cols=69 Identities=17% Similarity=0.272 Sum_probs=51.3
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCcc-ccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKA-WKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++|+++.|+.+...+...+.+.......... .++++||+||||||||++++++|..++.+++.++.+.
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~ 85 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 85 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchh
Confidence 37899999999987776544332221111111 2467999999999999999999999999999887753
No 148
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.14 E-value=4.1e-10 Score=112.51 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=51.8
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcC-ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVG-KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
-++|+++.|+.+...+.....+......+. -..|+++||+||||||||++++++|..++.+++.++.+
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat 81 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 81 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecc
Confidence 378999999999877766544332222211 12357899999999999999999999999999988865
No 149
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.14 E-value=1.6e-09 Score=106.55 Aligned_cols=148 Identities=14% Similarity=0.223 Sum_probs=105.4
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--------CcEEEEEe-c
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH--------FDVYDLEL-S 260 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~--------~~v~~l~l-~ 260 (419)
+|++++|.+.+++.+...+.. ...+..|||+||+|+|||++|+++|..+. .+++.+.. .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~------------~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~ 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIK------------NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHc------------CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc
Confidence 689999999998888665521 13356799999999999999999999762 24444432 1
Q ss_pred cc-CChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 261 SV-EGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 261 ~~-~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
.- -+-..++.+.... ...-|++||++|.+-. ...+.|
T Consensus 70 ~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------------------------------~a~naL 113 (313)
T PRK05564 70 KKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------------------------------QAQNAF 113 (313)
T ss_pred CCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCH------------------------------------HHHHHH
Confidence 11 1234566665433 2456999999986622 223457
Q ss_pred HHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
|..++.. ....++|++|++++.|-|.++. |+ .+++++.++.++....+...+
T Consensus 114 LK~LEep----p~~t~~il~~~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 114 LKTIEEP----PKGVFIILLCENLEQILDTIKS--RC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHHhcCC----CCCeEEEEEeCChHhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHHh
Confidence 7777754 3457788888889999999998 76 589999999999887776654
No 150
>PRK09087 hypothetical protein; Validated
Probab=99.14 E-value=7.2e-10 Score=103.81 Aligned_cols=130 Identities=15% Similarity=0.150 Sum_probs=84.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWH 307 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~ 307 (419)
-++|+||+|+|||+|++++++..+..++.. ..+. ...+.... ..+|+|||+|.+..
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~-----~~~~~~~~-~~~l~iDDi~~~~~---------------- 101 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIG-----SDAANAAA-EGPVLIEDIDAGGF---------------- 101 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcc-----hHHHHhhh-cCeEEEECCCCCCC----------------
Confidence 389999999999999999998876654433 1111 11122212 25888999996521
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecC-CCCC---CCccccCCCCcc--eEEEeCCCCH
Q 040638 308 SPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTN-HKDR---LDPALLRPGRMD--VHIHMSYCTL 381 (419)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN-~~~~---LdpALlrpGR~d--~~I~~~~~~~ 381 (419)
.... |.+.++.+... + +.+|+|++ .|.. ..|.|+. |+. ..+++..|+.
T Consensus 102 ------------------~~~~---lf~l~n~~~~~--g-~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~ 155 (226)
T PRK09087 102 ------------------DETG---LFHLINSVRQA--G-TSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDD 155 (226)
T ss_pred ------------------CHHH---HHHHHHHHHhC--C-CeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCH
Confidence 0112 34444444322 2 34455444 4432 3688988 774 8899999999
Q ss_pred HHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 382 CGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 382 ~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
+.+..++++.+...+..+.+++...+
T Consensus 156 e~~~~iL~~~~~~~~~~l~~ev~~~L 181 (226)
T PRK09087 156 ALLSQVIFKLFADRQLYVDPHVVYYL 181 (226)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999877777766665443
No 151
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.12 E-value=3.9e-10 Score=115.81 Aligned_cols=164 Identities=16% Similarity=0.257 Sum_probs=119.8
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE------------
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV------------ 254 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v------------ 254 (419)
+|.+|++++|++.+.+.|...+..- ....+|||.||-||||||+++.+|..++..-
T Consensus 11 RP~~F~evvGQe~v~~~L~nal~~~------------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~ 78 (515)
T COG2812 11 RPKTFDDVVGQEHVVKTLSNALENG------------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCIS 78 (515)
T ss_pred CcccHHHhcccHHHHHHHHHHHHhC------------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhh
Confidence 6889999999999888887665432 2345799999999999999999999886531
Q ss_pred ------------EEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHH
Q 040638 255 ------------YDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQ 316 (419)
Q Consensus 255 ------------~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (419)
+.++..+-.+-+++|++..+.. +.-|++|||++-+.
T Consensus 79 Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS-------------------------- 132 (515)
T COG2812 79 CKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS-------------------------- 132 (515)
T ss_pred hHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------------------------
Confidence 1111111123456676665542 34699999998553
Q ss_pred HHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC
Q 040638 317 IRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITE 396 (419)
Q Consensus 317 ~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~ 396 (419)
......||.-+..- ...+++|++|..+.++++.+++ |+ .+..+.-.+.++....+...+..++
T Consensus 133 ----------~~afNALLKTLEEP----P~hV~FIlATTe~~Kip~TIlS--Rc-q~f~fkri~~~~I~~~L~~i~~~E~ 195 (515)
T COG2812 133 ----------KQAFNALLKTLEEP----PSHVKFILATTEPQKIPNTILS--RC-QRFDFKRLDLEEIAKHLAAILDKEG 195 (515)
T ss_pred ----------HHHHHHHhcccccC----ccCeEEEEecCCcCcCchhhhh--cc-ccccccCCCHHHHHHHHHHHHHhcC
Confidence 23344455544443 5669999999999999999997 76 5678889999999999999999887
Q ss_pred CCChHHHHH
Q 040638 397 HPLFSEVEE 405 (419)
Q Consensus 397 ~~l~~~i~~ 405 (419)
....++.-.
T Consensus 196 I~~e~~aL~ 204 (515)
T COG2812 196 INIEEDALS 204 (515)
T ss_pred CccCHHHHH
Confidence 776665433
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.09 E-value=1.4e-09 Score=120.22 Aligned_cols=181 Identities=15% Similarity=0.228 Sum_probs=114.7
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHH
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHL 268 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l 268 (419)
..++|++...+.|.+.+.....+- .. ...+...+||+||||||||++|+++|..+ +.++..++++.......+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl---~~-~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGL---SD-PNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccC---CC-CCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 457888888888888776543210 00 00112248999999999999999999988 457778887765332222
Q ss_pred HHH---------------HH---HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 269 RKV---------------LI---ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 269 ~~l---------------~~---~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
..+ +. .....+||+|||||.+-+ ...
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~------------------------------------~v~ 684 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHP------------------------------------DVF 684 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCH------------------------------------HHH
Confidence 222 11 123457999999995522 233
Q ss_pred HhHHHHhcCc-ccC------CCCCEEEEEecCCCC-------------------------CCCccccCCCCcceEEEeCC
Q 040638 331 FGLLNFTNGL-WSS------SGDERIIVFTTNHKD-------------------------RLDPALLRPGRMDVHIHMSY 378 (419)
Q Consensus 331 s~Ll~~ldg~-~s~------~g~~~iiV~tTN~~~-------------------------~LdpALlrpGR~d~~I~~~~ 378 (419)
..|++.+|.- ... .-.+.+||+|||... .+.|.|+. |+|..|.+..
T Consensus 685 ~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~P 762 (852)
T TIGR03346 685 NVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHP 762 (852)
T ss_pred HHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCC
Confidence 4455655432 111 113578999999621 13466666 9999999999
Q ss_pred CCHHHHHHHHHHhhCCC---------CCCChHHHHHHHhcCCCCc
Q 040638 379 CTLCGFKILASNYLGIT---------EHPLFSEVEELIEQTKVTP 414 (419)
Q Consensus 379 ~~~~~~~~l~~~~l~~~---------~~~l~~~i~~l~~~~~~tp 414 (419)
++.+....|+...+... ...+.++....+...+++|
T Consensus 763 L~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~ 807 (852)
T TIGR03346 763 LGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDP 807 (852)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCC
Confidence 99999999998887631 1234555555555545543
No 153
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.09 E-value=1.2e-09 Score=120.19 Aligned_cols=158 Identities=16% Similarity=0.179 Sum_probs=104.5
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc-eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChH-
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG-YLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK- 266 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG-~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~- 266 (419)
+.++|+++..+.|.+.+.....+-. . -.-|.| +||+||||||||.+++++|..+ ...++.++++.+....
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~---~--~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~ 640 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLE---D--PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHT 640 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCC---C--CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhh
Confidence 3578888888888887765432110 0 012444 8999999999999999999998 4467778776653221
Q ss_pred ------------------HHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 267 ------------------HLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 267 ------------------~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
.|...+. ....+||+|||||..-+ .
T Consensus 641 ~~~l~g~~~gyvg~~~~g~L~~~v~-~~p~svvllDEieka~~------------------------------------~ 683 (852)
T TIGR03345 641 VSRLKGSPPGYVGYGEGGVLTEAVR-RKPYSVVLLDEVEKAHP------------------------------------D 683 (852)
T ss_pred hccccCCCCCcccccccchHHHHHH-hCCCcEEEEechhhcCH------------------------------------H
Confidence 1222222 24579999999984321 1
Q ss_pred HHHhHHHHhcCcc-cC------CCCCEEEEEecCCCC-----------------------------CCCccccCCCCcce
Q 040638 329 ETFGLLNFTNGLW-SS------SGDERIIVFTTNHKD-----------------------------RLDPALLRPGRMDV 372 (419)
Q Consensus 329 ~ls~Ll~~ldg~~-s~------~g~~~iiV~tTN~~~-----------------------------~LdpALlrpGR~d~ 372 (419)
...-|+..+|.-. .. .-.+.++|+|||-.. .+.|+|+. |++
T Consensus 684 v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~- 760 (852)
T TIGR03345 684 VLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMT- 760 (852)
T ss_pred HHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--cee-
Confidence 2333555554332 11 113578999998411 14567777 998
Q ss_pred EEEeCCCCHHHHHHHHHHhhCC
Q 040638 373 HIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 373 ~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.|.|...+.++...|+...+..
T Consensus 761 iI~F~pLs~e~l~~Iv~~~L~~ 782 (852)
T TIGR03345 761 VIPYLPLDDDVLAAIVRLKLDR 782 (852)
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999888754
No 154
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.09 E-value=2.5e-09 Score=105.38 Aligned_cols=63 Identities=22% Similarity=0.334 Sum_probs=50.7
Q ss_pred Ccc-ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------cEEEEEe
Q 040638 190 TFD-TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-------DVYDLEL 259 (419)
Q Consensus 190 ~f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-------~v~~l~l 259 (419)
-|+ +++|+++.++++++.+.....+. ...++.++|+||||||||||++++|+.++. .+|.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a~g~-------~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAAQGL-------EERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHHhcC-------CCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 466 89999999999988776655221 123566899999999999999999999976 8888877
No 155
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.07 E-value=1.3e-09 Score=110.11 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=24.2
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
++.++|+||||||||++|+++|..+..
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 567999999999999999999998853
No 156
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.05 E-value=6.4e-09 Score=108.28 Aligned_cols=204 Identities=18% Similarity=0.166 Sum_probs=123.2
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHh----h-------------chhhhh----hcCccccCceEEeCCCCC
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFL----K-------------RKDYYR----RVGKAWKRGYLLFGPLGT 237 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~----~-------------~~~~~~----~~g~~~~rG~LL~GPpGt 237 (419)
.|-. --.|+.|.+|.+++.+-+.++..|..+= + .++.+. ..+.|.++-+||+||||-
T Consensus 260 LWVd--ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 260 LWVD--KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred eeec--ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 5643 5579999999999999999988886541 1 011111 123455666999999999
Q ss_pred cHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHc----------cCCeEEEEecCcccccccchhhh---ccCCCC
Q 040638 238 GKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIAT----------ENKSILVVEDIDCCTELQDRSAQ---ARTASP 304 (419)
Q Consensus 238 GKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~----------~~~sIlviddiD~~~~~~~~~~~---~~~~~~ 304 (419)
||||||+.||...||.+.+++.++-.+...+++.+..+ .+|..+||||||-.....-+.-. ......
T Consensus 338 GKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~~Vdvilslv~a~~k~ 417 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRAAVDVILSLVKATNKQ 417 (877)
T ss_pred ChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHHHHHHHHHHHHhhcch
Confidence 99999999999999999999999887777776654332 46899999999954310000000 000000
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHH
Q 040638 305 YWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGF 384 (419)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~ 384 (419)
..|...... ...+.--+++| .|-||..+|. .--|||.----+...|.|..|.....
T Consensus 418 ~~Gkq~~~~----------~~rkkkr~~~L------------~RPIICICNd--LYaPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 418 ATGKQAKKD----------KKRKKKRSKLL------------TRPIICICND--LYAPALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred hhcCcccch----------hhhhhhccccc------------cCCEEEEecC--ccchhhhhcccceEEEEecCCChhHH
Confidence 000000000 00000001110 1456777775 23577751115788999999998887
Q ss_pred HHHHHHhhCCCCCCChH-HHHHHHh
Q 040638 385 KILASNYLGITEHPLFS-EVEELIE 408 (419)
Q Consensus 385 ~~l~~~~l~~~~~~l~~-~i~~l~~ 408 (419)
.+=++.....+...... .+..|++
T Consensus 474 v~RL~~IC~rE~mr~d~~aL~~L~e 498 (877)
T KOG1969|consen 474 VERLNEICHRENMRADSKALNALCE 498 (877)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHH
Confidence 77777766666554332 3444443
No 157
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.05 E-value=1.4e-09 Score=91.97 Aligned_cols=65 Identities=26% Similarity=0.421 Sum_probs=47.1
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEecccC--------------------ChHHHHHHHHHcc--CCeEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFD---VYDLELSSVE--------------------GNKHLRKVLIATE--NKSIL 281 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l~~~~--------------------~~~~l~~l~~~~~--~~sIl 281 (419)
+.++|+||||||||++++++|+.+... ++.++.+... .....+.++..+. .+.+|
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 458999999999999999999999775 7776665432 1223333443333 35999
Q ss_pred EEecCccccc
Q 040638 282 VVEDIDCCTE 291 (419)
Q Consensus 282 viddiD~~~~ 291 (419)
+|||++.+..
T Consensus 83 iiDei~~~~~ 92 (148)
T smart00382 83 ILDEITSLLD 92 (148)
T ss_pred EEECCcccCC
Confidence 9999997764
No 158
>PRK08116 hypothetical protein; Validated
Probab=99.04 E-value=1.4e-09 Score=104.42 Aligned_cols=117 Identities=19% Similarity=0.284 Sum_probs=72.4
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCC----------hHHHHHHHHHccCCeEEEEecCcccccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEG----------NKHLRKVLIATENKSILVVEDIDCCTEL 292 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~----------~~~l~~l~~~~~~~sIlviddiD~~~~~ 292 (419)
..|++|+||||||||+|+.|||+++ +..+..++...+-. ......++....+..+|+|||+.....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~- 192 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD- 192 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC-
Confidence 4579999999999999999999987 56676666544310 011223444455677999999963211
Q ss_pred cchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC-CC----CCccccCC
Q 040638 293 QDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK-DR----LDPALLRP 367 (419)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~-~~----LdpALlrp 367 (419)
.......|.+.+|.... .+..+|+|||.+ +. +++++..
T Consensus 193 ---------------------------------t~~~~~~l~~iin~r~~---~~~~~IiTsN~~~~eL~~~~~~ri~s- 235 (268)
T PRK08116 193 ---------------------------------TEWAREKVYNIIDSRYR---KGLPTIVTTNLSLEELKNQYGKRIYD- 235 (268)
T ss_pred ---------------------------------CHHHHHHHHHHHHHHHH---CCCCEEEECCCCHHHHHHHHhHHHHH-
Confidence 01223345555665532 224578888864 33 5677776
Q ss_pred CCc---ceEEEeCCCCH
Q 040638 368 GRM---DVHIHMSYCTL 381 (419)
Q Consensus 368 GR~---d~~I~~~~~~~ 381 (419)
|+ ...|.+.-++.
T Consensus 236 -Rl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 236 -RILEMCTPVENEGKSY 251 (268)
T ss_pred -HHHHcCEEEEeeCcCh
Confidence 63 44566665554
No 159
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.04 E-value=2.1e-09 Score=118.50 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=112.2
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccC-ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHH
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKR-GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKH 267 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r-G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~ 267 (419)
+.++|+++.++.|...+.....+- ..- .-|. .+||+||||||||+|++++|..+ ..++..++++.......
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl---~~~--~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~ 583 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGL---KNP--NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHT 583 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcc---cCC--CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccccc
Confidence 457788888888877665432110 000 1122 38999999999999999999988 35677777766532211
Q ss_pred -------------------HHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 268 -------------------LRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 268 -------------------l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
|...+. ....+|++|||+|.+-+ .
T Consensus 584 ~~~l~g~~~gyvg~~~~~~l~~~~~-~~p~~VvllDeieka~~------------------------------------~ 626 (821)
T CHL00095 584 VSKLIGSPPGYVGYNEGGQLTEAVR-KKPYTVVLFDEIEKAHP------------------------------------D 626 (821)
T ss_pred HHHhcCCCCcccCcCccchHHHHHH-hCCCeEEEECChhhCCH------------------------------------H
Confidence 222221 12348999999995522 2
Q ss_pred HHHhHHHHhcCcc-cC------CCCCEEEEEecCCCCC-------------------------------------CCccc
Q 040638 329 ETFGLLNFTNGLW-SS------SGDERIIVFTTNHKDR-------------------------------------LDPAL 364 (419)
Q Consensus 329 ~ls~Ll~~ldg~~-s~------~g~~~iiV~tTN~~~~-------------------------------------LdpAL 364 (419)
....|+..+|.-. .. .-.+.++|+|||.... +.|.+
T Consensus 627 v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pef 706 (821)
T CHL00095 627 IFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEF 706 (821)
T ss_pred HHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHH
Confidence 3344566666321 11 1245789999984311 22456
Q ss_pred cCCCCcceEEEeCCCCHHHHHHHHHHhhCCC---------CCCChHHHHHHHhcCCCCc
Q 040638 365 LRPGRMDVHIHMSYCTLCGFKILASNYLGIT---------EHPLFSEVEELIEQTKVTP 414 (419)
Q Consensus 365 lrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~---------~~~l~~~i~~l~~~~~~tp 414 (419)
+. |+|..|.|...+.++...|+...+... ...+.+++...+.+.++.|
T Consensus 707 ln--Rid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~ 763 (821)
T CHL00095 707 LN--RLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNP 763 (821)
T ss_pred hc--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCC
Confidence 66 999999999999999999998887631 1233455555554444444
No 160
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.03 E-value=1.6e-09 Score=102.35 Aligned_cols=97 Identities=18% Similarity=0.290 Sum_probs=67.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV 262 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~ 262 (419)
.++.+|+++....+..+.++..+..+.... .. ...+++|+||||||||+|+.|||+++ +..+..+....+
T Consensus 66 ~~~~tFdnf~~~~~~q~~al~~a~~~~~~~---~~----~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l 138 (244)
T PRK07952 66 HQNCSFENYRVECEGQMNALSKARQYVEEF---DG----NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADI 138 (244)
T ss_pred ccCCccccccCCCchHHHHHHHHHHHHHhh---cc----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHH
Confidence 356699998766555555666666665321 11 13489999999999999999999998 566766666544
Q ss_pred C---------ChHHHHHHHHHccCCeEEEEecCccc
Q 040638 263 E---------GNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 263 ~---------~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
. .+....+++....+..+|+|||+++.
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~ 174 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQ 174 (244)
T ss_pred HHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCC
Confidence 2 11223345556667899999999875
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.02 E-value=3.3e-09 Score=104.95 Aligned_cols=146 Identities=20% Similarity=0.258 Sum_probs=100.0
Q ss_pred Ccccccc-chhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC----------------
Q 040638 190 TFDTLAM-VTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF---------------- 252 (419)
Q Consensus 190 ~f~~l~g-~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~---------------- 252 (419)
.|++|.| .+.+++.+...+. . ...+..||||||+|+||+++++++|+.+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~----~--------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~ 70 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA----K--------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH----c--------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHH
Confidence 4778877 6667766654442 1 134567999999999999999999988631
Q ss_pred --------cEEEEEecccC-ChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHH
Q 040638 253 --------DVYDLELSSVE-GNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQI 317 (419)
Q Consensus 253 --------~v~~l~l~~~~-~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (419)
|+..+....-. .-..++.+.... ...-|++||++|.+-.
T Consensus 71 ~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~-------------------------- 124 (329)
T PRK08058 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA-------------------------- 124 (329)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH--------------------------
Confidence 33333222110 124555554332 2356999999986632
Q ss_pred HHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 318 RNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 318 ~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
.....||..++.. .+..++|++|+.+..|-|++++ |+ .+++++.++.++....++.
T Consensus 125 ----------~a~NaLLK~LEEP----p~~~~~Il~t~~~~~ll~TIrS--Rc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 125 ----------SAANSLLKFLEEP----SGGTTAILLTENKHQILPTILS--RC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ----------HHHHHHHHHhcCC----CCCceEEEEeCChHhCcHHHHh--hc-eeeeCCCCCHHHHHHHHHH
Confidence 2334577777765 3457888899999999999998 75 6799999999987776654
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.6e-09 Score=113.89 Aligned_cols=176 Identities=19% Similarity=0.272 Sum_probs=123.3
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccc---c-CceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCCh
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAW---K-RGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGN 265 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~---~-rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~ 265 (419)
.++|+++..+.|.+.+..-. .|+.- | ..+||.||.|+|||-|++++|..|. -.++.++++.....
T Consensus 492 rViGQd~AV~avs~aIrraR--------aGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~Ek 563 (786)
T COG0542 492 RVIGQDEAVEAVSDAIRRAR--------AGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEK 563 (786)
T ss_pred ceeChHHHHHHHHHHHHHHh--------cCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHH
Confidence 57888888888877776543 33321 2 2388999999999999999999996 78899999988766
Q ss_pred HHHHHHHHHc------------------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 040638 266 KHLRKVLIAT------------------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERI 327 (419)
Q Consensus 266 ~~l~~l~~~~------------------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (419)
..+.+++... ...|||++|||+.. ..
T Consensus 564 HsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKA------------------------------------Hp 607 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKA------------------------------------HP 607 (786)
T ss_pred HHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhc------------------------------------CH
Confidence 6677765332 12589999999843 13
Q ss_pred HHHHhHHHHhcCcccCCC-------CCEEEEEecCCC----------------------------CCCCccccCCCCcce
Q 040638 328 LETFGLLNFTNGLWSSSG-------DERIIVFTTNHK----------------------------DRLDPALLRPGRMDV 372 (419)
Q Consensus 328 ~~ls~Ll~~ldg~~s~~g-------~~~iiV~tTN~~----------------------------~~LdpALlrpGR~d~ 372 (419)
..+.-||+.+|.-.-..+ .+.+||||||-= ....|+++. |+|.
T Consensus 608 dV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~ 685 (786)
T COG0542 608 DVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDE 685 (786)
T ss_pred HHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hccc
Confidence 345557777764432322 246899999821 012466666 9999
Q ss_pred EEEeCCCCHHHHHHHHHHhhCCC-------C--CCChHHHHHHHhcCCCCc
Q 040638 373 HIHMSYCTLCGFKILASNYLGIT-------E--HPLFSEVEELIEQTKVTP 414 (419)
Q Consensus 373 ~I~~~~~~~~~~~~l~~~~l~~~-------~--~~l~~~i~~l~~~~~~tp 414 (419)
.|.|...+.+...+|+...|..- + ..+.+++...+.+.++.|
T Consensus 686 II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~ 736 (786)
T COG0542 686 IIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDP 736 (786)
T ss_pred EEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCC
Confidence 99999999999999999988742 1 234556666665555544
No 163
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=1.4e-08 Score=99.70 Aligned_cols=148 Identities=16% Similarity=0.205 Sum_probs=103.4
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC------------------
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH------------------ 251 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~------------------ 251 (419)
.|++++|.+++++.+...+..- ..+..|||+||+|+||++++.++|+.+-
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h 69 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQN------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH 69 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhC------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence 4899999999998887655332 2355799999999999999999998872
Q ss_pred CcEEEEEeccc-CC----------------------hHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCC
Q 040638 252 FDVYDLELSSV-EG----------------------NKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTA 302 (419)
Q Consensus 252 ~~v~~l~l~~~-~~----------------------~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~ 302 (419)
.|++.+..... .+ -..++++.... ...-|++||++|.+-.
T Consensus 70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~----------- 138 (314)
T PRK07399 70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE----------- 138 (314)
T ss_pred CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-----------
Confidence 22333322100 00 12344443222 2357889999886622
Q ss_pred CCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHH
Q 040638 303 SPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLC 382 (419)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~ 382 (419)
.....||..++.. + ..++|++|+.++.|-|.+++ |+ ..|.|+.++.+
T Consensus 139 -------------------------~aaNaLLK~LEEP----p-~~~fILi~~~~~~Ll~TI~S--Rc-q~i~f~~l~~~ 185 (314)
T PRK07399 139 -------------------------AAANALLKTLEEP----G-NGTLILIAPSPESLLPTIVS--RC-QIIPFYRLSDE 185 (314)
T ss_pred -------------------------HHHHHHHHHHhCC----C-CCeEEEEECChHhCcHHHHh--hc-eEEecCCCCHH
Confidence 2334577777665 2 34788888999999999998 76 77999999999
Q ss_pred HHHHHHHHhhC
Q 040638 383 GFKILASNYLG 393 (419)
Q Consensus 383 ~~~~l~~~~l~ 393 (419)
+..+.+.....
T Consensus 186 ~~~~~L~~~~~ 196 (314)
T PRK07399 186 QLEQVLKRLGD 196 (314)
T ss_pred HHHHHHHHhhc
Confidence 99988887644
No 164
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.97 E-value=6e-10 Score=93.63 Aligned_cols=104 Identities=21% Similarity=0.208 Sum_probs=59.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHH--HHHc-------c---CCeEEEEecCcccccccchh
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV--LIAT-------E---NKSILVVEDIDCCTELQDRS 296 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l--~~~~-------~---~~sIlviddiD~~~~~~~~~ 296 (419)
+||.|+||+|||++++++|..++.++..+.++.--..+++.-. +... . -..|+++|||....
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNrap------ 75 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRAP------ 75 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS-------
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccCC------
Confidence 7999999999999999999999999999988642222222211 0000 1 13699999998553
Q ss_pred hhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc-cc------CCCCCEEEEEecCCCC-----CCCccc
Q 040638 297 AQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL-WS------SSGDERIIVFTTNHKD-----RLDPAL 364 (419)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~-~s------~~g~~~iiV~tTN~~~-----~LdpAL 364 (419)
..+.+.||..|... .+ .......||+|-|..+ .|+.|+
T Consensus 76 ------------------------------pktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~ 125 (131)
T PF07726_consen 76 ------------------------------PKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQ 125 (131)
T ss_dssp ------------------------------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHH
T ss_pred ------------------------------HHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHH
Confidence 34666777776322 21 2334567888999877 688898
Q ss_pred cCCCCc
Q 040638 365 LRPGRM 370 (419)
Q Consensus 365 lrpGR~ 370 (419)
+. ||
T Consensus 126 ~D--RF 129 (131)
T PF07726_consen 126 LD--RF 129 (131)
T ss_dssp HT--TS
T ss_pred hc--cc
Confidence 88 77
No 165
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.95 E-value=2.3e-09 Score=114.85 Aligned_cols=153 Identities=20% Similarity=0.228 Sum_probs=99.2
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC------------------
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH------------------ 251 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~------------------ 251 (419)
.|..++|++++|..+.-.+..+ --.|+||.||||||||+++++++..+.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~-------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~ 68 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP-------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPE 68 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC-------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcc
Confidence 4889999998887775433221 023699999999999999999999982
Q ss_pred -----------------CcEEEEEecccC----ChHHHHHHHH-----------HccCCeEEEEecCcccccccchhhhc
Q 040638 252 -----------------FDVYDLELSSVE----GNKHLRKVLI-----------ATENKSILVVEDIDCCTELQDRSAQA 299 (419)
Q Consensus 252 -----------------~~v~~l~l~~~~----~~~~l~~l~~-----------~~~~~sIlviddiD~~~~~~~~~~~~ 299 (419)
.++..+.++... +...+...+. .....+|||||||+.+-.
T Consensus 69 ~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 69 EWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ccChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 334444333211 1112222221 112457999999997642
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc---c------CCCCCEEEEEecCCC-CCCCccccCCCC
Q 040638 300 RTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---S------SSGDERIIVFTTNHK-DRLDPALLRPGR 369 (419)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---s------~~g~~~iiV~tTN~~-~~LdpALlrpGR 369 (419)
..+..|+..|+.-. . ......++|+|+|.. ..+.++|+. |
T Consensus 141 ----------------------------~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~d--R 190 (633)
T TIGR02442 141 ----------------------------HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLD--R 190 (633)
T ss_pred ----------------------------HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHh--h
Confidence 23445666664221 1 111246788888854 368899999 9
Q ss_pred cceEEEeCCCC-HHHHHHHHHHhhC
Q 040638 370 MDVHIHMSYCT-LCGFKILASNYLG 393 (419)
Q Consensus 370 ~d~~I~~~~~~-~~~~~~l~~~~l~ 393 (419)
|+.+|.++++. .+++.++++..+.
T Consensus 191 ~~l~i~v~~~~~~~~~~~il~~~~~ 215 (633)
T TIGR02442 191 FGLCVDVAAPRDPEERVEIIRRRLA 215 (633)
T ss_pred cceEEEccCCCchHHHHHHHHHHHh
Confidence 99999999885 5777888876554
No 166
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.94 E-value=7.5e-09 Score=109.61 Aligned_cols=66 Identities=29% Similarity=0.350 Sum_probs=49.8
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
.|.. .-.|.++++|++.++..+++...+.... .+....+.++|+|||||||||+++++|+.+++.+
T Consensus 73 pW~e--KyrP~~ldel~~~~~ki~~l~~~l~~~~--------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~ 138 (637)
T TIGR00602 73 PWVE--KYKPETQHELAVHKKKIEEVETWLKAQV--------LENAPKRILLITGPSGCGKSTTIKILSKELGIQV 138 (637)
T ss_pred chHH--HhCCCCHHHhcCcHHHHHHHHHHHHhcc--------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHH
Confidence 5754 5689999999999988887665543321 1122334599999999999999999999998764
No 167
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=2.2e-08 Score=98.81 Aligned_cols=125 Identities=18% Similarity=0.256 Sum_probs=90.6
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcCC------------------------cEEEEEeccc---CChHHHHHHHHHc--
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLHF------------------------DVYDLELSSV---EGNKHLRKVLIAT-- 275 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------------------~v~~l~l~~~---~~~~~l~~l~~~~-- 275 (419)
.+.+|||+||+|+||++++.++|+.+.. |++.+....- -.-+.+|++....
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~ 100 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQ 100 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhh
Confidence 3567999999999999999999998832 4555543211 1234566655433
Q ss_pred ----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEE
Q 040638 276 ----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIV 351 (419)
Q Consensus 276 ----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV 351 (419)
...-|++||++|.+-. .....||..++.. .+..++|
T Consensus 101 ~~~~~~~kv~iI~~a~~m~~------------------------------------~aaNaLLK~LEEP----p~~~~fi 140 (328)
T PRK05707 101 TAQLGGRKVVLIEPAEAMNR------------------------------------NAANALLKSLEEP----SGDTVLL 140 (328)
T ss_pred ccccCCCeEEEECChhhCCH------------------------------------HHHHHHHHHHhCC----CCCeEEE
Confidence 2355888999997632 2344577777665 3568899
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 352 FTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 352 ~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
++|+.++.|.|.+++ |+ ..+.|+.|+.++....+....
T Consensus 141 L~t~~~~~ll~TI~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 141 LISHQPSRLLPTIKS--RC-QQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred EEECChhhCcHHHHh--hc-eeeeCCCcCHHHHHHHHHHhc
Confidence 999999999999998 87 459999999998887776643
No 168
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.93 E-value=3.7e-09 Score=110.52 Aligned_cols=126 Identities=15% Similarity=0.179 Sum_probs=82.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE----EecccCChHHHHHH----------HHHccCCeEEEEecCcccccccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL----ELSSVEGNKHLRKV----------LIATENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l----~l~~~~~~~~l~~l----------~~~~~~~sIlviddiD~~~~~~~ 294 (419)
+||+|+||||||+++++++.......+.. +...+.. ..++.. ........+++|||+|.+-.
T Consensus 239 vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~-~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~--- 314 (509)
T smart00350 239 ILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTA-AVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDD--- 314 (509)
T ss_pred EEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccc-cceEccCcceEEecCccEEecCCCEEEEechhhCCH---
Confidence 99999999999999999999886554432 1111110 011110 01123468999999997632
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc---------ccCCCCCEEEEEecCCCC-------
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL---------WSSSGDERIIVFTTNHKD------- 358 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~---------~s~~g~~~iiV~tTN~~~------- 358 (419)
.+...|+..|+.- ...-.....+|+|+|..+
T Consensus 315 ---------------------------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~ 361 (509)
T smart00350 315 ---------------------------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKL 361 (509)
T ss_pred ---------------------------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCc
Confidence 2233345555322 111123467889999764
Q ss_pred ------CCCccccCCCCcceEEEe-CCCCHHHHHHHHHHhhC
Q 040638 359 ------RLDPALLRPGRMDVHIHM-SYCTLCGFKILASNYLG 393 (419)
Q Consensus 359 ------~LdpALlrpGR~d~~I~~-~~~~~~~~~~l~~~~l~ 393 (419)
.|+|++++ |||....+ .+|+.+..++|+++.+.
T Consensus 362 ~~~~n~~l~~~lLs--RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 362 TPEENIDLPAPILS--RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred ChhhccCCChHHhC--ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 58999999 99997655 79999999999998654
No 169
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.92 E-value=6.5e-09 Score=105.94 Aligned_cols=128 Identities=16% Similarity=0.166 Sum_probs=79.8
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCC----cEEEEEecc---cCChHHHHH-----HHHH-----ccCCeEEEEecCcc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHF----DVYDLELSS---VEGNKHLRK-----VLIA-----TENKSILVVEDIDC 288 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~----~v~~l~l~~---~~~~~~l~~-----l~~~-----~~~~sIlviddiD~ 288 (419)
...+||+||||||||++|+++|...+. ....+.++. +-+...+.. -|.. .....++|+|||..
T Consensus 39 g~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~r 118 (498)
T PRK13531 39 GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLTSGYLPEAEIVFLDEIWK 118 (498)
T ss_pred CCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhcCCccccccEEeeccccc
Confidence 344999999999999999999997753 222222211 101011111 1111 11234899999974
Q ss_pred cccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh-cCcccC-----CCCCEEEEEecCCCC---C
Q 040638 289 CTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT-NGLWSS-----SGDERIIVFTTNHKD---R 359 (419)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l-dg~~s~-----~g~~~iiV~tTN~~~---~ 359 (419)
.. ..+.+.||..| ++.... .-..+++|+|||... .
T Consensus 119 as------------------------------------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~ 162 (498)
T PRK13531 119 AG------------------------------------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADS 162 (498)
T ss_pred CC------------------------------------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCC
Confidence 42 34666777777 333222 112367888888532 2
Q ss_pred CCccccCCCCcceEEEeCCCC-HHHHHHHHHHh
Q 040638 360 LDPALLRPGRMDVHIHMSYCT-LCGFKILASNY 391 (419)
Q Consensus 360 LdpALlrpGR~d~~I~~~~~~-~~~~~~l~~~~ 391 (419)
..+|++. ||-++|.+|||+ .++++.|+...
T Consensus 163 ~leAL~D--RFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 163 SLEALYD--RMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred chHHhHh--hEEEEEECCCCCchHHHHHHHHcc
Confidence 3359999 999999999997 57778888774
No 170
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.92 E-value=3.8e-09 Score=94.59 Aligned_cols=65 Identities=25% Similarity=0.477 Sum_probs=51.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCC----cEEEEEecccCC----hHHHHHHHHHcc------CCeEEEEecCccccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHF----DVYDLELSSVEG----NKHLRKVLIATE------NKSILVVEDIDCCTE 291 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~----~v~~l~l~~~~~----~~~l~~l~~~~~------~~sIlviddiD~~~~ 291 (419)
..+||.||+|||||.|++++|..+.. ++..++++.+.. ...+..++.... ...||++||||....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 35899999999999999999999996 999999999876 455555554332 346999999997754
No 171
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.91 E-value=6.3e-09 Score=101.66 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=64.6
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC--
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE-- 263 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~-- 263 (419)
.+|+++.....-+..+......|+... .. .+..+|++|+||||||||.|+.|||+++ ++.+..+....+-
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~---~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAY---PP--GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHh---hc--cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 567776655544445555445555321 11 1245799999999999999999999998 6777766665431
Q ss_pred -----ChHHHHHHHHHccCCeEEEEecCccc
Q 040638 264 -----GNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 264 -----~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
.+..+.+.+.......+|+||||..-
T Consensus 199 lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 199 LKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred HHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 11234455666778899999999753
No 172
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.90 E-value=1.4e-08 Score=99.75 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=82.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC------------------------CcEEEEEecccCC----hHHHHHHHHHc----
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH------------------------FDVYDLELSSVEG----NKHLRKVLIAT---- 275 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~------------------------~~v~~l~l~~~~~----~~~l~~l~~~~---- 275 (419)
.+||+||||+|||+++.++|+.+. .+++.++-+.... ...++++....
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~ 105 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESP 105 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCcchHHHHHHHHHHhccCC
Confidence 699999999999999999999987 6888888777654 33455554333
Q ss_pred --cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEe
Q 040638 276 --ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353 (419)
Q Consensus 276 --~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~t 353 (419)
...-|++|||+|.+.. .....++..+... .....+|++
T Consensus 106 ~~~~~kviiidead~mt~------------------------------------~A~nallk~lEep----~~~~~~il~ 145 (325)
T COG0470 106 LEGGYKVVIIDEADKLTE------------------------------------DAANALLKTLEEP----PKNTRFILI 145 (325)
T ss_pred CCCCceEEEeCcHHHHhH------------------------------------HHHHHHHHHhccC----CCCeEEEEE
Confidence 2357999999997632 1122244444333 456789999
Q ss_pred cCCCCCCCccccCCCCcceEEEeCCCCHHHHHHH
Q 040638 354 TNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKIL 387 (419)
Q Consensus 354 TN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l 387 (419)
||.++.|-|.+.+ |+ ..+.|+.++...+...
T Consensus 146 ~n~~~~il~tI~S--Rc-~~i~f~~~~~~~~i~~ 176 (325)
T COG0470 146 TNDPSKILPTIRS--RC-QRIRFKPPSRLEAIAW 176 (325)
T ss_pred cCChhhccchhhh--cc-eeeecCCchHHHHHHH
Confidence 9999999999988 76 5577776555444333
No 173
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=4.5e-09 Score=100.13 Aligned_cols=104 Identities=22% Similarity=0.288 Sum_probs=69.8
Q ss_pred Cccc-cccchhhHHHHHHHHHHHhhchhhh-hhcCcc-ccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 190 TFDT-LAMVTDMKKMIMDDLERFLKRKDYY-RRVGKA-WKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 190 ~f~~-l~g~~~~k~~i~~~l~~~~~~~~~~-~~~g~~-~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
.+|+ ++|++..|+.+--.+..++++-... .+-... -+..+||.||.|||||.||+.+|..|+.++-..+.+.+.
T Consensus 58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG 137 (408)
T COG1219 58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG 137 (408)
T ss_pred HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence 3444 5677777776644444433321111 011122 244599999999999999999999999999988887773
Q ss_pred -----ChHHHHHHHHHc------cCCeEEEEecCccccccc
Q 040638 264 -----GNKHLRKVLIAT------ENKSILVVEDIDCCTELQ 293 (419)
Q Consensus 264 -----~~~~l~~l~~~~------~~~sIlviddiD~~~~~~ 293 (419)
-+.-+.+++..+ .++.||+|||||.+....
T Consensus 138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkS 178 (408)
T COG1219 138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178 (408)
T ss_pred ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccC
Confidence 133455555443 468999999999886533
No 174
>PRK12377 putative replication protein; Provisional
Probab=98.89 E-value=1.1e-08 Score=96.93 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=46.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCC--------hHHHHHHHHHccCCeEEEEecCccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEG--------NKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~--------~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
..+++|+||||||||+|+.|||+.+ +..+..+....+-. ......++.......+|+|||+...
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~ 175 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQ 175 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 3579999999999999999999998 45666665544311 1123345566678899999999754
No 175
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.84 E-value=1.9e-08 Score=100.65 Aligned_cols=170 Identities=18% Similarity=0.205 Sum_probs=102.0
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---C--cEEEEEecccCC
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---F--DVYDLELSSVEG 264 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~--~v~~l~l~~~~~ 264 (419)
||++++..+.-....- ........+ |. ...-++||||.|.|||.|++|++++.. . .+..+......
T Consensus 85 tFdnFv~g~~N~~A~a-a~~~va~~~------g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~- 155 (408)
T COG0593 85 TFDNFVVGPSNRLAYA-AAKAVAENP------GG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFT- 155 (408)
T ss_pred chhheeeCCchHHHHH-HHHHHHhcc------CC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHH-
Confidence 9999876554433321 122222221 11 223489999999999999999999873 2 33333321110
Q ss_pred hH---HHH----HHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 265 NK---HLR----KVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 265 ~~---~l~----~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
+. .++ .-|...-+--+++||||+.+.+. ..+..+|.+.+
T Consensus 156 ~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk----------------------------------~~~qeefFh~F 201 (408)
T COG0593 156 NDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGK----------------------------------ERTQEEFFHTF 201 (408)
T ss_pred HHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCC----------------------------------hhHHHHHHHHH
Confidence 00 011 01111114568999999987641 12334455555
Q ss_pred cCcccCCCCCEEEEEec-CCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHH
Q 040638 338 NGLWSSSGDERIIVFTT-NHKDR---LDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELI 407 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tT-N~~~~---LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~ 407 (419)
..+... | ..||+|+ ..|.. ++|.|.+ ||. ..+.+..|+.+.+..++..........+.+++...+
T Consensus 202 N~l~~~-~--kqIvltsdr~P~~l~~~~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~l 272 (408)
T COG0593 202 NALLEN-G--KQIVLTSDRPPKELNGLEDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFL 272 (408)
T ss_pred HHHHhc-C--CEEEEEcCCCchhhccccHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 555432 2 2555655 45554 4588888 654 567888999999999999988777777777766544
No 176
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.84 E-value=1.4e-08 Score=92.66 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=35.7
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.|+++.|++..|+.+.-... | ..++||+||||||||+++++++..|
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G---~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G---GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C---C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C---CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 48899999999998854332 2 3479999999999999999999887
No 177
>PRK08181 transposase; Validated
Probab=98.83 E-value=1.6e-08 Score=96.88 Aligned_cols=64 Identities=27% Similarity=0.412 Sum_probs=47.4
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC-------ChHHHHHHHHHccCCeEEEEecCccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE-------GNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~-------~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
..+++|+||||||||.|+.|+|+++ ++.++.+....+- .+..+.+.+....+..+|+|||++..
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~ 179 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYV 179 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccc
Confidence 4579999999999999999999866 5666666654431 11234445566677889999999865
No 178
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=6.9e-08 Score=95.50 Aligned_cols=56 Identities=16% Similarity=0.142 Sum_probs=46.5
Q ss_pred HHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 040638 329 ETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNY 391 (419)
Q Consensus 329 ~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~ 391 (419)
..+.||..++.. ....++|++|++++.|.|.+++ |+ .+|.|+.|+.++..+.+...
T Consensus 148 AaNaLLKtLEEP----p~~t~fiL~t~~~~~LLpTI~S--Rc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 148 AANALLKTLEEP----PPGTVFLLVSARIDRLLPTILS--RC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHHHHHHHhcCC----CcCcEEEEEECChhhCcHHHHh--cC-EEEEecCCCHHHHHHHHHHc
Confidence 445677777765 4568999999999999999998 87 78999999999988877664
No 179
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.81 E-value=1.1e-07 Score=84.37 Aligned_cols=112 Identities=20% Similarity=0.280 Sum_probs=77.5
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHc-----------------------CCcEEEEEeccc---CChHHHHHHHHHcc--
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYL-----------------------HFDVYDLELSSV---EGNKHLRKVLIATE-- 276 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l-----------------------~~~v~~l~l~~~---~~~~~l~~l~~~~~-- 276 (419)
.+..|||+||+|+||+++|.++|+.+ ..+++.+..... -.-+.++.+.....
T Consensus 18 l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~i~i~~ir~i~~~~~~~ 97 (162)
T PF13177_consen 18 LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKKSIKIDQIREIIEFLSLS 97 (162)
T ss_dssp --SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSSSBSHHHHHHHHHHCTSS
T ss_pred cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccchhhHHHHHHHHHHHHHH
Confidence 35679999999999999999999876 234555554432 13456666665442
Q ss_pred ----CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEE
Q 040638 277 ----NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVF 352 (419)
Q Consensus 277 ----~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~ 352 (419)
..-|++|||+|.+. ......||..|+.. ....++|+
T Consensus 98 ~~~~~~KviiI~~ad~l~------------------------------------~~a~NaLLK~LEep----p~~~~fiL 137 (162)
T PF13177_consen 98 PSEGKYKVIIIDEADKLT------------------------------------EEAQNALLKTLEEP----PENTYFIL 137 (162)
T ss_dssp -TTSSSEEEEEETGGGS-------------------------------------HHHHHHHHHHHHST----TTTEEEEE
T ss_pred HhcCCceEEEeehHhhhh------------------------------------HHHHHHHHHHhcCC----CCCEEEEE
Confidence 35699999999763 23455688888776 35689999
Q ss_pred ecCCCCCCCccccCCCCcceEEEeCCC
Q 040638 353 TTNHKDRLDPALLRPGRMDVHIHMSYC 379 (419)
Q Consensus 353 tTN~~~~LdpALlrpGR~d~~I~~~~~ 379 (419)
+|+.++.|-|.+++ |+ ..|.++..
T Consensus 138 ~t~~~~~il~TI~S--Rc-~~i~~~~l 161 (162)
T PF13177_consen 138 ITNNPSKILPTIRS--RC-QVIRFRPL 161 (162)
T ss_dssp EES-GGGS-HHHHT--TS-EEEEE---
T ss_pred EECChHHChHHHHh--hc-eEEecCCC
Confidence 99999999999998 76 56666543
No 180
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.78 E-value=1.4e-07 Score=93.28 Aligned_cols=154 Identities=15% Similarity=0.180 Sum_probs=102.9
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~~ 266 (419)
-|++++|....-+.+++.+...... ...+||+|++||||+++|++|..... .+++.++|..+.. .
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~-----------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-~ 71 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPL-----------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-N 71 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-H
Confidence 3677888888888888887776522 34599999999999999999987653 5799999988753 3
Q ss_pred HHH-HHHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 267 HLR-KVLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 267 ~l~-~l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
.+. .+|. .....+.|||||||.+.. .
T Consensus 72 ~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~------------------------------------~ 115 (326)
T PRK11608 72 LLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------------L 115 (326)
T ss_pred HHHHHHccccccccCCcccccCCchhccCCCeEEeCChhhCCH------------------------------------H
Confidence 333 2321 223467899999997743 1
Q ss_pred HHHhHHHHhcCc-ccCCCC------CEEEEEecCCC-------CCCCccccCCCCc-ceEEEeCCCCH--HHHHHHHHHh
Q 040638 329 ETFGLLNFTNGL-WSSSGD------ERIIVFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTL--CGFKILASNY 391 (419)
Q Consensus 329 ~ls~Ll~~ldg~-~s~~g~------~~iiV~tTN~~-------~~LdpALlrpGR~-d~~I~~~~~~~--~~~~~l~~~~ 391 (419)
....|+++++.- ....|+ .+.+|+||+.. ..+.+.|.. || ..+|.+|.... ++...|+..|
T Consensus 116 ~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~--~l~~~~i~lPpLReR~eDI~~L~~~f 193 (326)
T PRK11608 116 VQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLD--RLAFDVVQLPPLRERQSDIMLMAEHF 193 (326)
T ss_pred HHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHH--hcCCCEEECCChhhhhhhHHHHHHHH
Confidence 223355555332 111121 35677777653 356677777 77 56888887754 6677788777
Q ss_pred hC
Q 040638 392 LG 393 (419)
Q Consensus 392 l~ 393 (419)
+.
T Consensus 194 l~ 195 (326)
T PRK11608 194 AI 195 (326)
T ss_pred HH
Confidence 64
No 181
>PRK06526 transposase; Provisional
Probab=98.77 E-value=1.3e-08 Score=96.95 Aligned_cols=64 Identities=20% Similarity=0.299 Sum_probs=44.5
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC-------ChHHHHHHHHHccCCeEEEEecCccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE-------GNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~-------~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
+.+++|+||||||||+|+.+|+..+ ++.+.......+- ....+...+.......+|+|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4579999999999999999999876 5555444433221 11123344455566789999999865
No 182
>PRK04132 replication factor C small subunit; Provisional
Probab=98.77 E-value=8.1e-08 Score=104.46 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=98.3
Q ss_pred eEEeC--CCCCcHHHHHHHHHHHc-----CCcEEEEEecccCChHHHHHHHHHcc--------CCeEEEEecCccccccc
Q 040638 229 YLLFG--PLGTGKSSLIAAMANYL-----HFDVYDLELSSVEGNKHLRKVLIATE--------NKSILVVEDIDCCTELQ 293 (419)
Q Consensus 229 ~LL~G--PpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~~~~~~l~~l~~~~~--------~~sIlviddiD~~~~~~ 293 (419)
.+..| |++.||||+|.|+|+.+ +.+++.++.++..+-..+++++.... ..-|++|||+|.+..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~-- 644 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ-- 644 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCH--
Confidence 34558 99999999999999998 56788999887666677887764321 135999999998742
Q ss_pred chhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceE
Q 040638 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVH 373 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~ 373 (419)
.....|+..|+.. .+...+|++||++..|.|+|++ |+ ..
T Consensus 645 ----------------------------------~AQnALLk~lEep----~~~~~FILi~N~~~kIi~tIrS--RC-~~ 683 (846)
T PRK04132 645 ----------------------------------DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RC-AI 683 (846)
T ss_pred ----------------------------------HHHHHHHHHhhCC----CCCeEEEEEeCChhhCchHHhh--hc-eE
Confidence 1233467777665 2457899999999999999998 86 77
Q ss_pred EEeCCCCHHHHHHHHHHhhCCCCCCC
Q 040638 374 IHMSYCTLCGFKILASNYLGITEHPL 399 (419)
Q Consensus 374 I~~~~~~~~~~~~l~~~~l~~~~~~l 399 (419)
+.|+.++.++....++..+..++..+
T Consensus 684 i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 684 FRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred EeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 99999999998888887776555444
No 183
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.76 E-value=9.3e-08 Score=103.01 Aligned_cols=155 Identities=17% Similarity=0.126 Sum_probs=100.3
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~~ 266 (419)
+|++++|.....+++++.+...... ...+||+|++||||+++|++|.+... .+++.++|..+..+.
T Consensus 323 ~~~~l~g~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~ 391 (638)
T PRK11388 323 TFDHMPQDSPQMRRLIHFGRQAAKS-----------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEA 391 (638)
T ss_pred cccceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHH
Confidence 6888888877777777777665432 33599999999999999999998764 689999998885433
Q ss_pred HHHHHHHH--------------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 040638 267 HLRKVLIA--------------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332 (419)
Q Consensus 267 ~l~~l~~~--------------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 332 (419)
--..+|.. ....+.|||||||.+.. .....
T Consensus 392 ~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~------------------------------------~~Q~~ 435 (638)
T PRK11388 392 LAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSP------------------------------------ELQSA 435 (638)
T ss_pred HHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCH------------------------------------HHHHH
Confidence 23344431 23468899999997742 12223
Q ss_pred HHHHhcCcc-cCCCC------CEEEEEecCCCCCCCccccCCCCc---------ceEEEeCCCCH--HHHHHHHHHhhCC
Q 040638 333 LLNFTNGLW-SSSGD------ERIIVFTTNHKDRLDPALLRPGRM---------DVHIHMSYCTL--CGFKILASNYLGI 394 (419)
Q Consensus 333 Ll~~ldg~~-s~~g~------~~iiV~tTN~~~~LdpALlrpGR~---------d~~I~~~~~~~--~~~~~l~~~~l~~ 394 (419)
|+..++.-. ..-|+ .+.+|+|||..- ..+...|+| ...|.+|.... ++...|+..|+..
T Consensus 436 Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~ 512 (638)
T PRK11388 436 LLQVLKTGVITRLDSRRLIPVDVRVIATTTADL---AMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRS 512 (638)
T ss_pred HHHHHhcCcEEeCCCCceEEeeEEEEEeccCCH---HHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHH
Confidence 455554321 11121 345778877532 233334555 56677776644 5677788877753
No 184
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.74 E-value=3.9e-08 Score=104.35 Aligned_cols=129 Identities=19% Similarity=0.161 Sum_probs=87.1
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCc--EEEEEecccC----ChHHHHHHHH-----------HccCCeEEEEecCccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFD--VYDLELSSVE----GNKHLRKVLI-----------ATENKSILVVEDIDCC 289 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~--v~~l~l~~~~----~~~~l~~l~~-----------~~~~~sIlviddiD~~ 289 (419)
.|+||.|+||||||+++++++..+... +..+.++... +.-.+...+. .....++|++|||+.+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl 96 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANLL 96 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhhC
Confidence 469999999999999999999988653 5555542111 1111111111 1134579999999976
Q ss_pred ccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc---------cCCCCCEEEEEecCCCC--
Q 040638 290 TELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---------SSSGDERIIVFTTNHKD-- 358 (419)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---------s~~g~~~iiV~tTN~~~-- 358 (419)
.. .+.+.|+..|+.-. ........+|+|+|..+
T Consensus 97 ~~------------------------------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~ 140 (589)
T TIGR02031 97 DD------------------------------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG 140 (589)
T ss_pred CH------------------------------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc
Confidence 42 34455666665321 11112467788999775
Q ss_pred -CCCccccCCCCcceEEEeCCC-CHHHHHHHHHHhhC
Q 040638 359 -RLDPALLRPGRMDVHIHMSYC-TLCGFKILASNYLG 393 (419)
Q Consensus 359 -~LdpALlrpGR~d~~I~~~~~-~~~~~~~l~~~~l~ 393 (419)
.|.++|+. ||+.+|.+.++ ..++|.+|+++++.
T Consensus 141 g~L~~~Lld--Rf~l~v~~~~~~~~~er~eil~~~~~ 175 (589)
T TIGR02031 141 GGLPDHLLD--RLALHVSLEDVASQDLRVEIVRRERC 175 (589)
T ss_pred CCCCHHHHH--hccCeeecCCCCCHHHHHHHHHHHHH
Confidence 79999999 99999999876 56668999998773
No 185
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.74 E-value=1e-08 Score=92.50 Aligned_cols=63 Identities=25% Similarity=0.478 Sum_probs=45.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc-------CChHHHHHHHHHccCCeEEEEecCcc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV-------EGNKHLRKVLIATENKSILVVEDIDC 288 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~-------~~~~~l~~l~~~~~~~sIlviddiD~ 288 (419)
+.|++|+||||||||.|+.|||+++ ++.+..+..+.+ ..+....+.+.......+|||||+..
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~ 119 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGY 119 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEecccccce
Confidence 5689999999999999999999876 777777777655 12233445566667788999999963
No 186
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=1.5e-07 Score=94.22 Aligned_cols=168 Identities=17% Similarity=0.195 Sum_probs=110.2
Q ss_pred cccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc-----EEEEEecccCChHH-
Q 040638 194 LAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD-----VYDLELSSVEGNKH- 267 (419)
Q Consensus 194 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~-----v~~l~l~~~~~~~~- 267 (419)
+..-++..+++...+...+.+. .|..+++|||||||||.+++-++.++.-. +..++|....+...
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~---------~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE---------RPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC---------CCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 6666777787877766666442 24459999999999999999999998544 78888876643221
Q ss_pred HHHHH------------------------HHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHH
Q 040638 268 LRKVL------------------------IATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILF 323 (419)
Q Consensus 268 l~~l~------------------------~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (419)
+.+++ .......|+++||+|.+....
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~------------------------------ 139 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKD------------------------------ 139 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhcccc------------------------------
Confidence 12222 222346788999999887510
Q ss_pred HHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC--CCCC
Q 040638 324 VERILETFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI--TEHP 398 (419)
Q Consensus 324 ~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~--~~~~ 398 (419)
...+-.|+...+.. ...+.+|+.+|.. +.+||.+.+. .-..+|.||..+.++...|++.-... ....
T Consensus 140 ---~~~LY~L~r~~~~~----~~~v~vi~i~n~~~~~~~ld~rv~s~-l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~ 211 (366)
T COG1474 140 ---GEVLYSLLRAPGEN----KVKVSIIAVSNDDKFLDYLDPRVKSS-LGPSEIVFPPYTAEELYDILRERVEEGFSAGV 211 (366)
T ss_pred ---chHHHHHHhhcccc----ceeEEEEEEeccHHHHHHhhhhhhhc-cCcceeeeCCCCHHHHHHHHHHHHHhhccCCC
Confidence 12333333333333 2346788888865 5788888752 12355899999999999999998763 3444
Q ss_pred ChHHHHHHHh
Q 040638 399 LFSEVEELIE 408 (419)
Q Consensus 399 l~~~i~~l~~ 408 (419)
+.+.+-.++.
T Consensus 212 ~~~~vl~lia 221 (366)
T COG1474 212 IDDDVLKLIA 221 (366)
T ss_pred cCccHHHHHH
Confidence 5555544443
No 187
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.73 E-value=2e-07 Score=92.20 Aligned_cols=149 Identities=18% Similarity=0.195 Sum_probs=94.0
Q ss_pred ccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCChHHHH-H
Q 040638 195 AMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHLR-K 270 (419)
Q Consensus 195 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~~~l~-~ 270 (419)
+|....-+.+++.+..... ....+||+|++||||+++|++|..... .+++.++|..+... .+. .
T Consensus 2 iG~S~~m~~~~~~~~~~a~-----------~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~-~l~~~ 69 (329)
T TIGR02974 2 IGESNAFLEVLEQVSRLAP-----------LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSEN-LLDSE 69 (329)
T ss_pred CcCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChH-HHHHH
Confidence 3444445555555555432 234599999999999999999987664 68999999887532 232 3
Q ss_pred HHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 271 VLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 271 l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+|. .....+.|||||||.+.. .....|
T Consensus 70 lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~------------------------------------~~Q~~L 113 (329)
T TIGR02974 70 LFGHEAGAFTGAQKRHQGRFERADGGTLFLDELATASL------------------------------------LVQEKL 113 (329)
T ss_pred HhccccccccCcccccCCchhhCCCCEEEeCChHhCCH------------------------------------HHHHHH
Confidence 331 223568999999997742 122334
Q ss_pred HHHhcCcc-cCCC------CCEEEEEecCCC-------CCCCccccCCCCc-ceEEEeCCCC--HHHHHHHHHHhhC
Q 040638 334 LNFTNGLW-SSSG------DERIIVFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--LCGFKILASNYLG 393 (419)
Q Consensus 334 l~~ldg~~-s~~g------~~~iiV~tTN~~-------~~LdpALlrpGR~-d~~I~~~~~~--~~~~~~l~~~~l~ 393 (419)
+.+++.-. ...| .++.+|+|||.. ..+.+.|.. |+ ...|++|... .++...|+..|+.
T Consensus 114 l~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~~--rl~~~~i~lPpLReR~eDI~~L~~~fl~ 188 (329)
T TIGR02974 114 LRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRADLLD--RLAFDVITLPPLRERQEDIMLLAEHFAI 188 (329)
T ss_pred HHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHHHHH--HhcchhcCCCchhhhhhhHHHHHHHHHH
Confidence 45543221 1111 235677777643 345566766 77 4578888876 5778888888775
No 188
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.73 E-value=1.7e-07 Score=97.67 Aligned_cols=72 Identities=29% Similarity=0.440 Sum_probs=55.8
Q ss_pred CCCCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 176 NHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 176 ~~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+...|.. .-.|.+.++|+..++..++|...+...+.. ...++-+||+|||||||||+++++|+++++.+.
T Consensus 5 ~~~~W~~--ky~P~~~~eLavhkkKv~eV~~wl~~~~~~--------~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 5 ESEPWVE--KYAPKTLDELAVHKKKVEEVRSWLEEMFSG--------SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred ccCccch--hcCCCCHHHhhccHHHHHHHHHHHHHHhcc--------CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 3456755 557999999999988888887777654422 233445789999999999999999999998877
Q ss_pred EE
Q 040638 256 DL 257 (419)
Q Consensus 256 ~l 257 (419)
+-
T Consensus 75 Ew 76 (519)
T PF03215_consen 75 EW 76 (519)
T ss_pred Ee
Confidence 53
No 189
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.72 E-value=1.9e-07 Score=98.45 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=103.2
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCCh
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGN 265 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~ 265 (419)
.+|+.++|....-+++++.+...... ...+||+|++||||+++|++|.... +.+++.++|..+..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~-----------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~- 260 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARS-----------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE- 260 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCc-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-
Confidence 47899999988888888888776522 3459999999999999999999875 46899999988743
Q ss_pred HHHH-HHHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 040638 266 KHLR-KVLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERI 327 (419)
Q Consensus 266 ~~l~-~l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (419)
..+. .+|. ...+.+.|||||||.+..
T Consensus 261 ~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------------------------------------ 304 (534)
T TIGR01817 261 TLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------------------------------------ 304 (534)
T ss_pred HHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------------------------------------
Confidence 3333 2322 123467999999997742
Q ss_pred HHHHhHHHHhcCc-ccCCCC------CEEEEEecCCC-------CCCCccccCCCCc-ceEEEeCCCC--HHHHHHHHHH
Q 040638 328 LETFGLLNFTNGL-WSSSGD------ERIIVFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCT--LCGFKILASN 390 (419)
Q Consensus 328 ~~ls~Ll~~ldg~-~s~~g~------~~iiV~tTN~~-------~~LdpALlrpGR~-d~~I~~~~~~--~~~~~~l~~~ 390 (419)
.....|+..++.- +...|+ ...+|+||+.. ..+.+.|.. |+ ...|.+|... .++...|+..
T Consensus 305 ~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLreR~eDi~~L~~~ 382 (534)
T TIGR01817 305 AFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAVAKGEFRADLYY--RINVVPIFLPPLRERREDIPLLAEA 382 (534)
T ss_pred HHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHHHcCCCCHHHHH--HhcCCeeeCCCcccccccHHHHHHH
Confidence 1223355555432 211122 34667777643 223334443 44 3478888776 5778888888
Q ss_pred hhCC
Q 040638 391 YLGI 394 (419)
Q Consensus 391 ~l~~ 394 (419)
|+..
T Consensus 383 ~l~~ 386 (534)
T TIGR01817 383 FLEK 386 (534)
T ss_pred HHHH
Confidence 8753
No 190
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.71 E-value=1.3e-07 Score=84.40 Aligned_cols=85 Identities=16% Similarity=0.149 Sum_probs=58.5
Q ss_pred ccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHHHH
Q 040638 195 AMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKV 271 (419)
Q Consensus 195 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~~l 271 (419)
+|....-+++++.+...... +..+||+|++||||+.+|++|.+.. +.+++.++|+.+..+..-..+
T Consensus 2 iG~s~~m~~~~~~~~~~a~~-----------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 2 IGESPAMKRLREQAKRAASS-----------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp S--SHHHHHHHHHHHHHTTS-----------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHhCC-----------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 45555556666666655432 3469999999999999999999876 468999999988544434455
Q ss_pred HHH-----------------ccCCeEEEEecCcccc
Q 040638 272 LIA-----------------TENKSILVVEDIDCCT 290 (419)
Q Consensus 272 ~~~-----------------~~~~sIlviddiD~~~ 290 (419)
|.. ......||||||+.+.
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~ 106 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLP 106 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-
T ss_pred hccccccccccccccCCceeeccceEEeecchhhhH
Confidence 532 2356899999999874
No 191
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.2e-07 Score=90.27 Aligned_cols=91 Identities=22% Similarity=0.403 Sum_probs=58.1
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC----
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE---- 263 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~---- 263 (419)
+.++-+.+...+..+..+..+. ++|. -..+++||||||+|||.|+.|||+++ |..+..+...++-
T Consensus 78 ~~d~~~~~~~~~~~l~~~~~~~---~~~~-----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk 149 (254)
T COG1484 78 EFDFEFQPGIDKKALEDLASLV---EFFE-----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLK 149 (254)
T ss_pred cccccCCcchhHHHHHHHHHHH---HHhc-----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 3344444555555545454443 2222 35689999999999999999999998 5667777665541
Q ss_pred ---ChHHHH-HHHHHccCCeEEEEecCccc
Q 040638 264 ---GNKHLR-KVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 264 ---~~~~l~-~l~~~~~~~sIlviddiD~~ 289 (419)
.+.... ++.....+.-+|+|||+-..
T Consensus 150 ~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~ 179 (254)
T COG1484 150 AAFDEGRLEEKLLRELKKVDLLIIDDIGYE 179 (254)
T ss_pred HHHhcCchHHHHHHHhhcCCEEEEecccCc
Confidence 111122 23333667789999999754
No 192
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=2.4e-07 Score=91.38 Aligned_cols=124 Identities=13% Similarity=0.155 Sum_probs=86.0
Q ss_pred cccCceEEeCCCCCcHHHHHHHHHHHcC-------------------------CcEEEEEeccc----------CChHHH
Q 040638 224 AWKRGYLLFGPLGTGKSSLIAAMANYLH-------------------------FDVYDLELSSV----------EGNKHL 268 (419)
Q Consensus 224 ~~~rG~LL~GPpGtGKTsL~~aiA~~l~-------------------------~~v~~l~l~~~----------~~~~~l 268 (419)
..+.+|||+||+|+|||+++.++|+.+. .|++.+...+- -+-+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 3456799999999999999999998873 45555654210 023455
Q ss_pred HHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Q 040638 269 RKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWS 342 (419)
Q Consensus 269 ~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s 342 (419)
|.+.... ...-|++||++|.+-. .....|+..++...
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------------------------------~a~naLLk~LEep~- 141 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESMNL------------------------------------QAANSLLKVLEEPP- 141 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhCCH------------------------------------HHHHHHHHHHHhCc-
Confidence 6654333 2346888999997632 22334666666652
Q ss_pred CCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 343 SSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 343 ~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
....+|++|++++.+.|.+.+ |+ .++.|+.|+.++....+..
T Consensus 142 ---~~~~~Ilvth~~~~ll~ti~S--Rc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 142 ---PQVVFLLVSHAADKVLPTIKS--RC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ---CCCEEEEEeCChHhChHHHHH--Hh-hhhcCCCCCHHHHHHHHHh
Confidence 236688899999999999987 76 7789999999887766654
No 193
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.64 E-value=1.7e-07 Score=92.49 Aligned_cols=63 Identities=25% Similarity=0.327 Sum_probs=45.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCC---------hHHHHHHHHHccCCeEEEEecCccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEG---------NKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~---------~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
.+++||||||||||+|+.|||+++ +..+..+....+-. .......+......-+|+|||+...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e 258 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTE 258 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCC
Confidence 689999999999999999999987 66676666544311 1111222444456789999999754
No 194
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.63 E-value=9.1e-08 Score=87.67 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=94.9
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-----cEEEEEe
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-----DVYDLEL 259 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-----~v~~l~l 259 (419)
-..|..+.+++|.++..+.+ ..+.+. |- -..+++.|||||||||-+.++|++|=. -+.+++.
T Consensus 20 KYrP~~l~dIVGNe~tv~rl----~via~~-------gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 20 KYRPSVLQDIVGNEDTVERL----SVIAKE-------GN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred hhCchHHHHhhCCHHHHHHH----HHHHHc-------CC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 56799999999998776655 223221 11 124899999999999999999998732 2345555
Q ss_pred cccCChHHHHH---HHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 260 SSVEGNKHLRK---VLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 260 ~~~~~~~~l~~---l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
++-.+-.-+|. .|.+.. +.-||++||.|++..-.+ .
T Consensus 87 SdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQ---------------------------------Q-- 131 (333)
T KOG0991|consen 87 SDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQ---------------------------------Q-- 131 (333)
T ss_pred ccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHH---------------------------------H--
Confidence 44433333443 343331 246999999997753000 0
Q ss_pred HhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCC
Q 040638 331 FGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEH 397 (419)
Q Consensus 331 s~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~ 397 (419)
.|-.-|.-. |. ...+.+++|..++|=+.+.+ |+. .+.+.-.+.++...=+.+....+..
T Consensus 132 -AlRRtMEiy-S~---ttRFalaCN~s~KIiEPIQS--RCA-iLRysklsd~qiL~Rl~~v~k~Ekv 190 (333)
T KOG0991|consen 132 -ALRRTMEIY-SN---TTRFALACNQSEKIIEPIQS--RCA-ILRYSKLSDQQILKRLLEVAKAEKV 190 (333)
T ss_pred -HHHHHHHHH-cc---cchhhhhhcchhhhhhhHHh--hhH-hhhhcccCHHHHHHHHHHHHHHhCC
Confidence 011122222 22 24577889998888777776 653 3556666666655544454444443
No 195
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.7e-07 Score=92.79 Aligned_cols=66 Identities=24% Similarity=0.424 Sum_probs=56.2
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--------ChHHHHHHHHHc------cCCeEEEEecCccccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--------GNKHLRKVLIAT------ENKSILVVEDIDCCTE 291 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--------~~~~l~~l~~~~------~~~sIlviddiD~~~~ 291 (419)
|..+||.||.|+|||.|++.+|..++.++...+|+.+. -++-+.+++..+ .+..|+||||+|.+..
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~ 305 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITK 305 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcc
Confidence 45699999999999999999999999999999999883 245667777655 4689999999998864
No 196
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=1.7e-07 Score=100.18 Aligned_cols=155 Identities=19% Similarity=0.248 Sum_probs=105.4
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEEEEe
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYDLEL 259 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~l~l 259 (419)
.+|-++|-++-.+++++.|.+.. |..-+|.|+||+|||.++..+|... +..++.+++
T Consensus 168 klDPvIGRd~EI~r~iqIL~RR~-------------KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~ 234 (786)
T COG0542 168 KLDPVIGRDEEIRRTIQILSRRT-------------KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDL 234 (786)
T ss_pred CCCCCcChHHHHHHHHHHHhccC-------------CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecH
Confidence 57778888777777777665443 5567899999999999999999765 677889988
Q ss_pred cccC--------ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 260 SSVE--------GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 260 ~~~~--------~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
..+. -++.++.++.... .+.|||||||+.+.+.....+. ...
T Consensus 235 g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~----------------------------a~D 286 (786)
T COG0542 235 GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGG----------------------------AMD 286 (786)
T ss_pred HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCccccc----------------------------ccc
Confidence 8773 3567777776553 3799999999998763221110 011
Q ss_pred HHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 330 TFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 330 ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
.+.+|.- .. + .|+..+|++|...+ .-|+||-| || ..|.+..|+.++-..|++-.-.
T Consensus 287 AaNiLKP---aL-A-RGeL~~IGATT~~EYRk~iEKD~AL~R--RF-Q~V~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 287 AANLLKP---AL-A-RGELRCIGATTLDEYRKYIEKDAALER--RF-QKVLVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred hhhhhHH---HH-h-cCCeEEEEeccHHHHHHHhhhchHHHh--cC-ceeeCCCCCHHHHHHHHHHHHH
Confidence 1112221 11 1 24566666553211 23999999 99 6689999999998888876433
No 197
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=5.6e-07 Score=88.47 Aligned_cols=123 Identities=15% Similarity=0.106 Sum_probs=87.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcC------------------------CcEEEEEecc--cCChHHHHHHHHHc----
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLH------------------------FDVYDLELSS--VEGNKHLRKVLIAT---- 275 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~------------------------~~v~~l~l~~--~~~~~~l~~l~~~~---- 275 (419)
+.+|||+||+|+||++++.++|..+- .|++.+.... .-+-+.+|++....
T Consensus 24 ~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~ 103 (325)
T PRK06871 24 HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHA 103 (325)
T ss_pred ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcc
Confidence 55799999999999999999998872 2344443210 01234556554332
Q ss_pred --cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEe
Q 040638 276 --ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353 (419)
Q Consensus 276 --~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~t 353 (419)
...-|++||++|.+- ......||..++.. .+..++|++
T Consensus 104 ~~g~~KV~iI~~a~~m~------------------------------------~~AaNaLLKtLEEP----p~~~~fiL~ 143 (325)
T PRK06871 104 QQGGNKVVYIQGAERLT------------------------------------EAAANALLKTLEEP----RPNTYFLLQ 143 (325)
T ss_pred ccCCceEEEEechhhhC------------------------------------HHHHHHHHHHhcCC----CCCeEEEEE
Confidence 124588899998663 23444577777665 456899999
Q ss_pred cCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 040638 354 TNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNY 391 (419)
Q Consensus 354 TN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~ 391 (419)
|++++.|-|.+++ |+ .++.|+.|+.++..+.+...
T Consensus 144 t~~~~~llpTI~S--RC-~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 144 ADLSAALLPTIYS--RC-QTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred ECChHhCchHHHh--hc-eEEeCCCCCHHHHHHHHHHH
Confidence 9999999999998 76 67899999999888777654
No 198
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.61 E-value=1.5e-06 Score=91.24 Aligned_cols=93 Identities=16% Similarity=0.209 Sum_probs=66.4
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~ 263 (419)
...+|++++|....-+.+++.+...... ...+||+|++||||+++|+++.... +.+++.++|..+.
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~-----------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAML-----------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 3458999999887777777777655422 3349999999999999999997665 3578899998875
Q ss_pred ChHHHHHHHH-----------------HccCCeEEEEecCcccc
Q 040638 264 GNKHLRKVLI-----------------ATENKSILVVEDIDCCT 290 (419)
Q Consensus 264 ~~~~l~~l~~-----------------~~~~~sIlviddiD~~~ 290 (419)
.+..-..+|. .....+.|+|||||.+.
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~ 311 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMS 311 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCC
Confidence 3222223332 12346789999999774
No 199
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.60 E-value=2.2e-07 Score=96.21 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=75.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEE--EEecccCC-------h--------------HHHHHHH----------H
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYD--LELSSVEG-------N--------------KHLRKVL----------I 273 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~--l~l~~~~~-------~--------------~~l~~l~----------~ 273 (419)
..++|+||||||||++++.+++.+...-.. ++.+.+.+ . .....++ .
T Consensus 211 ~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l 290 (506)
T PRK09862 211 HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEI 290 (506)
T ss_pred cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhHh
Confidence 349999999999999999999988543221 22222110 0 0011111 2
Q ss_pred HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh-cCcc--cC------C
Q 040638 274 ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT-NGLW--SS------S 344 (419)
Q Consensus 274 ~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l-dg~~--s~------~ 344 (419)
......++|+||++.+- ..++..|++.| ++.. +. .
T Consensus 291 ~~A~gGvLfLDEi~e~~------------------------------------~~~~~~L~~~LE~g~v~I~r~g~~~~~ 334 (506)
T PRK09862 291 SLAHNGVLFLDELPEFE------------------------------------RRTLDALREPIESGQIHLSRTRAKITY 334 (506)
T ss_pred hhccCCEEecCCchhCC------------------------------------HHHHHHHHHHHHcCcEEEecCCcceec
Confidence 23456899999998542 23444556555 2222 11 1
Q ss_pred CCCEEEEEecCCCC---------------------CCCccccCCCCcceEEEeCCCCHH
Q 040638 345 GDERIIVFTTNHKD---------------------RLDPALLRPGRMDVHIHMSYCTLC 382 (419)
Q Consensus 345 g~~~iiV~tTN~~~---------------------~LdpALlrpGR~d~~I~~~~~~~~ 382 (419)
.....+|+|+|... +|..+++. |||.++.+++++.+
T Consensus 335 pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v~~~~~~ 391 (506)
T PRK09862 335 PARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEIPLPPPG 391 (506)
T ss_pred cCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEeCCCCHH
Confidence 23468899999753 57889999 99999999999876
No 200
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.60 E-value=1.1e-06 Score=86.35 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=83.9
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcC---------------------CcEEEEEe--cccC-------ChHHHHHHHHH
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLH---------------------FDVYDLEL--SSVE-------GNKHLRKVLIA 274 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~---------------------~~v~~l~l--~~~~-------~~~~l~~l~~~ 274 (419)
.+.++||+||+|+||+++|.++|..+- .|++.+.. ..-+ .-+.+|++...
T Consensus 25 l~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~ 104 (319)
T PRK08769 25 LGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQK 104 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHH
Confidence 356799999999999999999998762 23444421 1000 12334444332
Q ss_pred cc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCE
Q 040638 275 TE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDER 348 (419)
Q Consensus 275 ~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~ 348 (419)
.. ..-|++||++|.+- ....+.||..++.. .+..
T Consensus 105 ~~~~p~~g~~kV~iI~~ae~m~------------------------------------~~AaNaLLKtLEEP----p~~~ 144 (319)
T PRK08769 105 LALTPQYGIAQVVIVDPADAIN------------------------------------RAACNALLKTLEEP----SPGR 144 (319)
T ss_pred HhhCcccCCcEEEEeccHhhhC------------------------------------HHHHHHHHHHhhCC----CCCC
Confidence 21 23588888888663 23445577777665 3557
Q ss_pred EEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 349 IIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 349 iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
++|++|+.++.|-|.+++ |+ .+|.|+.|+.++....+..
T Consensus 145 ~fiL~~~~~~~lLpTIrS--RC-q~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 145 YLWLISAQPARLPATIRS--RC-QRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred eEEEEECChhhCchHHHh--hh-eEeeCCCcCHHHHHHHHHH
Confidence 899999999999999998 87 6689999999887766654
No 201
>PRK06921 hypothetical protein; Provisional
Probab=98.59 E-value=2.8e-07 Score=88.41 Aligned_cols=63 Identities=27% Similarity=0.347 Sum_probs=43.3
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEecccCCh-----HHHHHHHHHccCCeEEEEecCcc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLELSSVEGN-----KHLRKVLIATENKSILVVEDIDC 288 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l~~~~~~-----~~l~~l~~~~~~~sIlviddiD~ 288 (419)
..+++|+||||||||+|+.|||+++ +..+..+....+-.. ..+...+.......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4579999999999999999999987 455555554332100 11222334455678999999953
No 202
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=7.5e-07 Score=87.34 Aligned_cols=123 Identities=15% Similarity=0.143 Sum_probs=88.6
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcC-----------------------CcEEEEEeccc---CChHHHHHHHHHc---
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLH-----------------------FDVYDLELSSV---EGNKHLRKVLIAT--- 275 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~-----------------------~~v~~l~l~~~---~~~~~l~~l~~~~--- 275 (419)
.+.+|||+||.|+||++++.++|..+- .|++.+....- -+-+.+|.+....
T Consensus 24 l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~ 103 (319)
T PRK06090 24 IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQES 103 (319)
T ss_pred cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhC
Confidence 355799999999999999999998772 34555543211 1234455543322
Q ss_pred ---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEE
Q 040638 276 ---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVF 352 (419)
Q Consensus 276 ---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~ 352 (419)
...-|++||++|.+- ....+.||..++.. ....++|+
T Consensus 104 ~~~~~~kV~iI~~ae~m~------------------------------------~~AaNaLLKtLEEP----p~~t~fiL 143 (319)
T PRK06090 104 SQLNGYRLFVIEPADAMN------------------------------------ESASNALLKTLEEP----APNCLFLL 143 (319)
T ss_pred cccCCceEEEecchhhhC------------------------------------HHHHHHHHHHhcCC----CCCeEEEE
Confidence 124689999998663 23445577777765 45689999
Q ss_pred ecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 353 TTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 353 tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
+|++++.|-|.+++ |+ ..+.|+.|+.++....+..
T Consensus 144 ~t~~~~~lLpTI~S--RC-q~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 144 VTHNQKRLLPTIVS--RC-QQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred EECChhhChHHHHh--cc-eeEeCCCCCHHHHHHHHHH
Confidence 99999999999998 87 6789999999888777654
No 203
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=2.2e-07 Score=93.85 Aligned_cols=134 Identities=22% Similarity=0.273 Sum_probs=90.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc-c------CChHHHHHHHHHc--cCCeEEEEecCcccccccchhh
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS-V------EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSA 297 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~-~------~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~ 297 (419)
..+||+||||+|||+||+.||...+++++.+--.. + ..-..+++.|..+ +.-+||++|||+.+++-..-..
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vpIGP 618 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVPIGP 618 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccccCc
Confidence 35999999999999999999999999998663322 1 1224567778766 3469999999998876211100
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEE-ecCCCCCCC-ccccCCCCcceEEE
Q 040638 298 QARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVF-TTNHKDRLD-PALLRPGRMDVHIH 375 (419)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~-tTN~~~~Ld-pALlrpGR~d~~I~ 375 (419)
.-+...+..|+.++..... .+.+++|+ ||...+.|. -.++. +|+..|+
T Consensus 619 --------------------------RfSN~vlQaL~VllK~~pp--kg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~ 668 (744)
T KOG0741|consen 619 --------------------------RFSNLVLQALLVLLKKQPP--KGRKLLIFGTTSRREVLQEMGILD--CFSSTIH 668 (744)
T ss_pred --------------------------hhhHHHHHHHHHHhccCCC--CCceEEEEecccHHHHHHHcCHHH--hhhheee
Confidence 0125566667777776632 34455555 666655553 34556 8999999
Q ss_pred eCCCCH-HHHHHHHHH
Q 040638 376 MSYCTL-CGFKILASN 390 (419)
Q Consensus 376 ~~~~~~-~~~~~l~~~ 390 (419)
+|-.+. ++..+++..
T Consensus 669 Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 669 VPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCccCchHHHHHHHHH
Confidence 998766 666666554
No 204
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.57 E-value=1.1e-07 Score=91.41 Aligned_cols=135 Identities=24% Similarity=0.368 Sum_probs=78.2
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEecccCChHHHHHHHHHc-------------cCCeEEEEecCccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFD---VYDLELSSVEGNKHLRKVLIAT-------------ENKSILVVEDIDCC 289 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l~~~~~~~~l~~l~~~~-------------~~~sIlviddiD~~ 289 (419)
++.+||.||+|||||++++..-..+.-+ +..+.++...+...+.+++... .++.|+||||+...
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4569999999999999998877666543 3345555554444555544221 13579999999854
Q ss_pred ccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc--CcccCC------CCCEEEEEecCCCC---
Q 040638 290 TELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN--GLWSSS------GDERIIVFTTNHKD--- 358 (419)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld--g~~s~~------g~~~iiV~tTN~~~--- 358 (419)
.. +.-+ . +..+.-|-..+| |.+... =..+.+|+|+|...
T Consensus 113 ~~--d~yg----------t------------------q~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~ 162 (272)
T PF12775_consen 113 QP--DKYG----------T------------------QPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRN 162 (272)
T ss_dssp -----TTS------------------------------HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--
T ss_pred CC--CCCC----------C------------------cCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCC
Confidence 32 1111 0 111111222332 333221 13467888887543
Q ss_pred CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 359 RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 359 ~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
.|++.++| .| ..+.+++|+.++...|+..++.
T Consensus 163 ~is~R~~r--~f-~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 163 PISPRFLR--HF-NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp SHHHHHHT--TE-EEEE----TCCHHHHHHHHHHH
T ss_pred CCChHHhh--he-EEEEecCCChHHHHHHHHHHHh
Confidence 47889998 77 5689999999988888777665
No 205
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.55 E-value=2.4e-07 Score=96.26 Aligned_cols=48 Identities=25% Similarity=0.337 Sum_probs=35.6
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
..|+++.|....++.+.- .. .....++|+||||||||+++++|++.+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~----aa-----------~~g~~vlliG~pGsGKTtlar~l~~llp 236 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEI----AA-----------AGGHNLLLFGPPGSGKTMLASRLQGILP 236 (499)
T ss_pred CCHHHhcCcHHHHhhhhh----hc-----------cCCCEEEEEecCCCCHHHHHHHHhcccC
Confidence 378889888777665422 11 1123499999999999999999998764
No 206
>PRK09183 transposase/IS protein; Provisional
Probab=98.55 E-value=1.7e-07 Score=89.63 Aligned_cols=64 Identities=19% Similarity=0.300 Sum_probs=44.1
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC-------ChHHHHHHHHH-ccCCeEEEEecCccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE-------GNKHLRKVLIA-TENKSILVVEDIDCC 289 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~-------~~~~l~~l~~~-~~~~sIlviddiD~~ 289 (419)
..+++|+||||||||+|+.++++.+ ++.+..+....+. ....+...+.. ...+.+++|||++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 3469999999999999999998765 5666665544331 01123344443 456789999999854
No 207
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=8.4e-07 Score=87.83 Aligned_cols=123 Identities=18% Similarity=0.130 Sum_probs=88.5
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcC------------------------CcEEEEEecc---cCChHHHHHHHHHc--
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLH------------------------FDVYDLELSS---VEGNKHLRKVLIAT-- 275 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~------------------------~~v~~l~l~~---~~~~~~l~~l~~~~-- 275 (419)
.+.+|||+||+|+||++++.++|..+- .|++.+.... .-+-+.+|++....
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~ 102 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLYE 102 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHhh
Confidence 355799999999999999999998872 3444443221 01234555554433
Q ss_pred ----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEE
Q 040638 276 ----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIV 351 (419)
Q Consensus 276 ----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV 351 (419)
...-|++||+.|.+-. ...+.||..++.. .+..++|
T Consensus 103 ~~~~g~~kV~iI~~ae~m~~------------------------------------~AaNaLLKtLEEP----p~~t~fi 142 (334)
T PRK07993 103 HARLGGAKVVWLPDAALLTD------------------------------------AAANALLKTLEEP----PENTWFF 142 (334)
T ss_pred ccccCCceEEEEcchHhhCH------------------------------------HHHHHHHHHhcCC----CCCeEEE
Confidence 2346999999997632 3445577777665 4568999
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 352 FTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 352 ~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
++|++++.|-|.+++ |+- .+.++.|+.++....+..
T Consensus 143 L~t~~~~~lLpTIrS--RCq-~~~~~~~~~~~~~~~L~~ 178 (334)
T PRK07993 143 LACREPARLLATLRS--RCR-LHYLAPPPEQYALTWLSR 178 (334)
T ss_pred EEECChhhChHHHHh--ccc-cccCCCCCHHHHHHHHHH
Confidence 999999999999998 874 689999999888776654
No 208
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.54 E-value=9.1e-07 Score=92.57 Aligned_cols=157 Identities=17% Similarity=0.199 Sum_probs=101.3
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCC
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEG 264 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~ 264 (419)
..+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+.. +.+++.++|..+..
T Consensus 208 ~~~f~~iiG~S~~m~~~~~~i~~~A~~-----------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e 276 (526)
T TIGR02329 208 RYRLDDLLGASAPMEQVRALVRLYARS-----------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE 276 (526)
T ss_pred ccchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh
Confidence 357999999988888888877666432 3459999999999999999998765 56899999988853
Q ss_pred hHHHH-HHHH------------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 265 NKHLR-KVLI------------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 265 ~~~l~-~l~~------------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
..+. .+|. .....+.|||||||.+..
T Consensus 277 -~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~---------------------------------- 321 (526)
T TIGR02329 277 -SLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPL---------------------------------- 321 (526)
T ss_pred -hHHHHHhcCCcccccccccccccccchhhcCCceEEecChHhCCH----------------------------------
Confidence 2232 2332 123467899999997743
Q ss_pred HHHHHHhHHHHhcCcc-cCCCC------CEEEEEecCCC-C------CCCccccCCCCcc-eEEEeCCCCH--HHHHHHH
Q 040638 326 RILETFGLLNFTNGLW-SSSGD------ERIIVFTTNHK-D------RLDPALLRPGRMD-VHIHMSYCTL--CGFKILA 388 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~-s~~g~------~~iiV~tTN~~-~------~LdpALlrpGR~d-~~I~~~~~~~--~~~~~l~ 388 (419)
.....|+..++.-. ..-|+ ++.+|+|||.. + .+.+.|.. |+. ..|++|.... ++...|+
T Consensus 322 --~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~dL~~--rL~~~~I~lPPLReR~eDI~~L~ 397 (526)
T TIGR02329 322 --PLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRRDLFY--RLSILRIALPPLRERPGDILPLA 397 (526)
T ss_pred --HHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhhcchhHHHHH--hcCCcEEeCCCchhchhHHHHHH
Confidence 12233455543221 11111 23566777643 1 22333333 443 6788887754 6777888
Q ss_pred HHhhCC
Q 040638 389 SNYLGI 394 (419)
Q Consensus 389 ~~~l~~ 394 (419)
..|+..
T Consensus 398 ~~fl~~ 403 (526)
T TIGR02329 398 AEYLVQ 403 (526)
T ss_pred HHHHHH
Confidence 888764
No 209
>PF13173 AAA_14: AAA domain
Probab=98.54 E-value=3.7e-07 Score=77.70 Aligned_cols=63 Identities=19% Similarity=0.396 Sum_probs=46.3
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcC--CcEEEEEecccCChH----HHHHHHHHc--cCCeEEEEecCccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLH--FDVYDLELSSVEGNK----HLRKVLIAT--ENKSILVVEDIDCC 289 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~--~~v~~l~l~~~~~~~----~l~~l~~~~--~~~sIlviddiD~~ 289 (419)
+-++|+||.||||||+++.++..+. .++..+++....... .+.+.+.+. ..+.+++||||+.+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhh
Confidence 3489999999999999999998886 777788776653221 123333333 36799999999866
No 210
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.54 E-value=3.6e-06 Score=80.52 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=34.8
Q ss_pred ccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC----CCCh-HHHHHHHhcCCCCccc
Q 040638 364 LLRPGRMDVHIHMSYCTLCGFKILASNYLGITE----HPLF-SEVEELIEQTKVTPAE 416 (419)
Q Consensus 364 LlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~----~~l~-~~i~~l~~~~~~tpa~ 416 (419)
+.+ |+...++++..+.++...++...+.... ..+. +.++.+.+..+-.|..
T Consensus 179 l~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~ 234 (269)
T TIGR03015 179 LRQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL 234 (269)
T ss_pred HHh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH
Confidence 445 8888999999999999999998885322 2333 3455566555554543
No 211
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.53 E-value=1.3e-06 Score=91.34 Aligned_cols=90 Identities=12% Similarity=0.161 Sum_probs=67.5
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHH-----------cCCcEEEE
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY-----------LHFDVYDL 257 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~-----------l~~~v~~l 257 (419)
.+|++++|.....+.+.+.+..+... ...+||+|++||||+++|++|.+. -+.+++.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s-----------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~i 284 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARS-----------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAV 284 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEe
Confidence 46999999988888888777665432 345999999999999999999887 35689999
Q ss_pred EecccCChHHHH-HHHH------------------HccCCeEEEEecCcccc
Q 040638 258 ELSSVEGNKHLR-KVLI------------------ATENKSILVVEDIDCCT 290 (419)
Q Consensus 258 ~l~~~~~~~~l~-~l~~------------------~~~~~sIlviddiD~~~ 290 (419)
+|..+..+ .+. .+|. .....+.||||||+.+.
T Consensus 285 nCaal~e~-lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp 335 (538)
T PRK15424 285 NCGAIAES-LLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMP 335 (538)
T ss_pred ecccCChh-hHHHHhcCCccccccCccccccCCchhccCCCEEEEcChHhCC
Confidence 99988532 232 2332 12345789999999774
No 212
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.52 E-value=1.2e-07 Score=78.18 Aligned_cols=62 Identities=21% Similarity=0.291 Sum_probs=39.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCT 290 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~ 290 (419)
+.||||||+|||++++.+|..+...+.......+-....-.+.+.......++++||+....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~~q~vvi~DD~~~~~ 62 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQGQPVVIIDDFGQDN 62 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccCCCcEEEEeecCccc
Confidence 57999999999999999998775332111111110111223445556677899999998553
No 213
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.52 E-value=2e-06 Score=93.43 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=67.2
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCCh
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGN 265 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~ 265 (419)
.+|++++|.....+.+++.+...... ...+||+|++|||||++|++|.... +.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~-----------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQS-----------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 47899999998889888888776432 3459999999999999999998865 468899999876422
Q ss_pred HHHHHHH-----------------HHccCCeEEEEecCcccc
Q 040638 266 KHLRKVL-----------------IATENKSILVVEDIDCCT 290 (419)
Q Consensus 266 ~~l~~l~-----------------~~~~~~sIlviddiD~~~ 290 (419)
..-..+| ......+.|||||||.+.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~ 483 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 483 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhhCC
Confidence 1111111 123456899999999763
No 214
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.46 E-value=1e-06 Score=87.62 Aligned_cols=156 Identities=24% Similarity=0.270 Sum_probs=101.0
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEE-------------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVY------------- 255 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~------------- 255 (419)
-.|.-++|++..|..+.-+...+ --.|+|+-|+.||||||+++|+|..|..-..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P-------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P 80 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP-------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP 80 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc-------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence 36788899999998886543322 1347999999999999999999998832211
Q ss_pred ---------------------------EEEecccC----ChHHHHHHHH-----------HccCCeEEEEecCccccccc
Q 040638 256 ---------------------------DLELSSVE----GNKHLRKVLI-----------ATENKSILVVEDIDCCTELQ 293 (419)
Q Consensus 256 ---------------------------~l~l~~~~----~~~~l~~l~~-----------~~~~~sIlviddiD~~~~~~ 293 (419)
.+.+.... +.-.+.+.+. ...++.|+++||+..+-+
T Consensus 81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-- 158 (423)
T COG1239 81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-- 158 (423)
T ss_pred hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH--
Confidence 11111100 0111222221 123578999999986643
Q ss_pred chhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh---------cCcccCCCCCEEEEEecCCC-CCCCcc
Q 040638 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT---------NGLWSSSGDERIIVFTTNHK-DRLDPA 363 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l---------dg~~s~~g~~~iiV~tTN~~-~~LdpA 363 (419)
.....||+.+ +|+.-.-.-..++|+|+|.- ..|-|.
T Consensus 159 ----------------------------------~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpq 204 (423)
T COG1239 159 ----------------------------------HLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQ 204 (423)
T ss_pred ----------------------------------HHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchh
Confidence 1112233333 44432233457899999965 578999
Q ss_pred ccCCCCcceEEEeCCC-CHHHHHHHHHHhhCCC
Q 040638 364 LLRPGRMDVHIHMSYC-TLCGFKILASNYLGIT 395 (419)
Q Consensus 364 LlrpGR~d~~I~~~~~-~~~~~~~l~~~~l~~~ 395 (419)
|+. ||+.+|.+.+| +.+++.++.++-+..+
T Consensus 205 LlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f~ 235 (423)
T COG1239 205 LLD--RFGLEVDTHYPLDLEERVEIIRRRLAFE 235 (423)
T ss_pred hHh--hhcceeeccCCCCHHHHHHHHHHHHHhh
Confidence 999 99999999887 6688888888877654
No 215
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.44 E-value=1.5e-06 Score=80.69 Aligned_cols=155 Identities=21% Similarity=0.265 Sum_probs=81.2
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEE-EEEeccc--CC--------------------------------------
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVY-DLELSSV--EG-------------------------------------- 264 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~-~l~l~~~--~~-------------------------------------- 264 (419)
.+.++|+||.|+|||+|++.+.+.+.-.-+ .+.+... ..
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 99 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSEALGISIPSITLEKISKDLS 99 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS-
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcch
Confidence 345999999999999999999998843221 1111000 00
Q ss_pred ---hHHHHHHHHH---ccCCeEEEEecCcccc-cccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 265 ---NKHLRKVLIA---TENKSILVVEDIDCCT-ELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 265 ---~~~l~~l~~~---~~~~sIlviddiD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
...+..++.. ...+.||+|||+|.+. ...+ ....+..|.+.+
T Consensus 100 ~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~-------------------------------~~~~~~~l~~~~ 148 (234)
T PF01637_consen 100 EDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE-------------------------------DKDFLKSLRSLL 148 (234)
T ss_dssp GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT-------------------------------THHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc-------------------------------hHHHHHHHHHHH
Confidence 1112222221 2235899999999886 2110 123444566666
Q ss_pred cCcccCCCCCEEEEEecCCC----C--CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCC---hHHHHHHHh
Q 040638 338 NGLWSSSGDERIIVFTTNHK----D--RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPL---FSEVEELIE 408 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~----~--~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l---~~~i~~l~~ 408 (419)
+..... ....+|+++... + .-...+. ||+.. +.+++.+.++.+++++..+... ..+ .++++.+..
T Consensus 149 ~~~~~~--~~~~~v~~~S~~~~~~~~~~~~~~~~--~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~ 222 (234)
T PF01637_consen 149 DSLLSQ--QNVSIVITGSSDSLMEEFLDDKSPLF--GRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYS 222 (234)
T ss_dssp HH------TTEEEEEEESSHHHHHHTT-TTSTTT--T---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHH
T ss_pred hhcccc--CCceEEEECCchHHHHHhhcccCccc--cccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHH
Confidence 664332 234444444321 1 1223343 38877 9999999999999999976554 333 456777777
Q ss_pred cCCCCcccc
Q 040638 409 QTKVTPAEV 417 (419)
Q Consensus 409 ~~~~tpa~v 417 (419)
-++-.|.-|
T Consensus 223 ~~gG~P~~l 231 (234)
T PF01637_consen 223 LTGGNPRYL 231 (234)
T ss_dssp HHTT-HHHH
T ss_pred HhCCCHHHH
Confidence 666677654
No 216
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.43 E-value=4.8e-06 Score=87.37 Aligned_cols=89 Identities=11% Similarity=0.133 Sum_probs=66.5
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~ 266 (419)
.+++++|.....+.+.+.+...... ...+||+|++||||++++++|.... +.+++.++|..+..+
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~-----------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~- 252 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAAS-----------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES- 252 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCC-----------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-
Confidence 4678889888888888888775422 3469999999999999999999875 468999999888532
Q ss_pred HHH-HHHH-----------------HccCCeEEEEecCcccc
Q 040638 267 HLR-KVLI-----------------ATENKSILVVEDIDCCT 290 (419)
Q Consensus 267 ~l~-~l~~-----------------~~~~~sIlviddiD~~~ 290 (419)
.+. .+|. .....+.|||||||.+.
T Consensus 253 ~~e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~ 294 (509)
T PRK05022 253 LAESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELP 294 (509)
T ss_pred HHHHHhcCccccccCCCcccCCcchhhcCCCEEEecChhhCC
Confidence 222 2332 12346789999999774
No 217
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.40 E-value=8.4e-07 Score=76.49 Aligned_cols=76 Identities=25% Similarity=0.324 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEecccCChHHHHHHHHH
Q 040638 198 TDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD---VYDLELSSVEGNKHLRKVLIA 274 (419)
Q Consensus 198 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l~~~~~~~~l~~l~~~ 274 (419)
-..-+++.+.+...... ...++|+|+|||||+++|+++....+.. +..+++.... .+++..
T Consensus 4 S~~~~~l~~~l~~~a~~-----------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----~~~l~~ 67 (138)
T PF14532_consen 4 SPAMRRLRRQLERLAKS-----------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----AELLEQ 67 (138)
T ss_dssp CHHHHHHHHHHHHHHCS-----------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----HHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-----------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----HHHHHH
Confidence 33445566666555422 3459999999999999999999887652 2333333322 334444
Q ss_pred ccCCeEEEEecCcccc
Q 040638 275 TENKSILVVEDIDCCT 290 (419)
Q Consensus 275 ~~~~sIlviddiD~~~ 290 (419)
+ .+..|+|+|||++.
T Consensus 68 a-~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 68 A-KGGTLYLKNIDRLS 82 (138)
T ss_dssp C-TTSEEEEECGCCS-
T ss_pred c-CCCEEEECChHHCC
Confidence 4 77899999999874
No 218
>PHA02624 large T antigen; Provisional
Probab=98.36 E-value=1.8e-06 Score=89.84 Aligned_cols=125 Identities=16% Similarity=0.175 Sum_probs=79.1
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccC
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQART 301 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~ 301 (419)
|++.++.++||||||||||++++++++.|+..+..++.+ .+.+.-.+.-+...-+.+|||+-.-.-. ......+
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsP----t~ks~FwL~pl~D~~~~l~dD~t~~~~~--~~~Lp~G 500 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCP----PDKLNFELGCAIDQFMVVFEDVKGQPAD--NKDLPSG 500 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCC----cchhHHHhhhhhhceEEEeeeccccccc--cccCCcc
Confidence 456677899999999999999999999997766666532 2344555555566779999999632210 0000000
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCC-----CE-----EEEEecCCCCCCCccccCCCCcc
Q 040638 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGD-----ER-----IIVFTTNHKDRLDPALLRPGRMD 371 (419)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~-----~~-----iiV~tTN~~~~LdpALlrpGR~d 371 (419)
.. -..+.-|-|.+||....+-+ .+ =.|.|||. ..|+..|.- ||-
T Consensus 501 ~~-----------------------~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~--Rf~ 554 (647)
T PHA02624 501 QG-----------------------MNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKA--RFA 554 (647)
T ss_pred cc-----------------------cchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHH--HHH
Confidence 00 11234577888887221110 11 24668886 467888887 898
Q ss_pred eEEEeCC
Q 040638 372 VHIHMSY 378 (419)
Q Consensus 372 ~~I~~~~ 378 (419)
..+.|..
T Consensus 555 ~~~~F~~ 561 (647)
T PHA02624 555 KVLDFKP 561 (647)
T ss_pred Hhccccc
Confidence 8888864
No 219
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.36 E-value=3.3e-07 Score=86.61 Aligned_cols=123 Identities=25% Similarity=0.270 Sum_probs=72.6
Q ss_pred chhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----ChHHHHHHHHHccC-----CeEEE
Q 040638 214 RKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE----GNKHLRKVLIATEN-----KSILV 282 (419)
Q Consensus 214 ~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~----~~~~l~~l~~~~~~-----~sIlv 282 (419)
.+...+.+.+..+.| +.|.||+|||||||.++|++.+...-+.+.+.... ...++.+.+.-.++ ..+-|
T Consensus 14 ~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV 93 (258)
T COG1120 14 GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTV 93 (258)
T ss_pred CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEE
Confidence 345566677777777 78999999999999999999999887777765432 12223332211111 12333
Q ss_pred EecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC-CCCCEEEEE
Q 040638 283 VEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS-SGDERIIVF 352 (419)
Q Consensus 283 iddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~-~g~~~iiV~ 352 (419)
.|-+ ..++.+...+....++.+.+. ........++..+-+..+.. |||+++.|+
T Consensus 94 ~d~V----------~~GR~p~~~~~~~~~~~D~~~------v~~aL~~~~~~~la~r~~~~LSGGerQrv~ 148 (258)
T COG1120 94 YELV----------LLGRYPHLGLFGRPSKEDEEI------VEEALELLGLEHLADRPVDELSGGERQRVL 148 (258)
T ss_pred eehH----------hhcCCcccccccCCCHhHHHH------HHHHHHHhCcHHHhcCcccccChhHHHHHH
Confidence 3322 222322222232222222221 33456677788888888777 888887665
No 220
>PF05729 NACHT: NACHT domain
Probab=98.34 E-value=5.1e-06 Score=72.87 Aligned_cols=133 Identities=17% Similarity=0.204 Sum_probs=73.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCC---------cEEEEEecccCChH---HHHHHH------------------HHccC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHF---------DVYDLELSSVEGNK---HLRKVL------------------IATEN 277 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~---------~v~~l~l~~~~~~~---~l~~l~------------------~~~~~ 277 (419)
-++|+|+||+|||++++.++..+.. -++.+.+....... .+...+ .....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 3789999999999999999987721 12233333332111 222222 12245
Q ss_pred CeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC
Q 040638 278 KSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK 357 (419)
Q Consensus 278 ~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~ 357 (419)
+.+|+||.+|.+...... . .......-+.+.+.... ..+-+++|.+..+.
T Consensus 82 ~~llilDglDE~~~~~~~--~--------------------------~~~~~~~~l~~l~~~~~--~~~~~liit~r~~~ 131 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS--Q--------------------------ERQRLLDLLSQLLPQAL--PPGVKLIITSRPRA 131 (166)
T ss_pred ceEEEEechHhcccchhh--h--------------------------HHHHHHHHHHHHhhhcc--CCCCeEEEEEcCCh
Confidence 789999999977541111 0 00111222333333311 12234444433222
Q ss_pred C-CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 358 D-RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 358 ~-~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
. .+...+.. ...+++...+.++.+++++.|+..
T Consensus 132 ~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 132 FPDLRRRLKQ----AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred HHHHHHhcCC----CcEEEECCCCHHHHHHHHHHHhhc
Confidence 1 22233323 267899999999999999999863
No 221
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.33 E-value=4.7e-06 Score=78.22 Aligned_cols=65 Identities=25% Similarity=0.292 Sum_probs=54.5
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHc-cCCeEEEEecCcccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIAT-ENKSILVVEDIDCCT 290 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~-~~~sIlviddiD~~~ 290 (419)
..|-.++||+|||||.+++++|..+|..++.++++.-.+-..+.+++.-+ ...+.+++||++++-
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~ 97 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLS 97 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSS
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhh
Confidence 45778999999999999999999999999999999988888999998655 568999999999774
No 222
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.32 E-value=3.2e-06 Score=78.81 Aligned_cols=45 Identities=22% Similarity=0.369 Sum_probs=36.2
Q ss_pred hhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 215 KDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 215 ~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
...++.+++....| +.|.||+|||||||.+.||+.....-+.+.+
T Consensus 16 ~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~ 62 (248)
T COG1116 16 VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62 (248)
T ss_pred eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 34556667777778 8899999999999999999999777666554
No 223
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.30 E-value=3.5e-06 Score=91.66 Aligned_cols=126 Identities=17% Similarity=0.248 Sum_probs=76.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE-------EEEecccCC--hHHHHHH-----HHHccCCeEEEEecCcccccccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY-------DLELSSVEG--NKHLRKV-----LIATENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~-------~l~l~~~~~--~~~l~~l-----~~~~~~~sIlviddiD~~~~~~~ 294 (419)
+||.|+||||||.+++++++......| .+.++.... +..-... .......++++|||+|.+..
T Consensus 495 VLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~--- 571 (915)
T PTZ00111 495 VLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHN--- 571 (915)
T ss_pred EEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCH---
Confidence 999999999999999999987643332 222222100 0000000 01123468999999997632
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc---------ccCCCCCEEEEEecCCCC-------
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL---------WSSSGDERIIVFTTNHKD------- 358 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~---------~s~~g~~~iiV~tTN~~~------- 358 (419)
.....|+..|..- ...-.....||+|+|..+
T Consensus 572 ---------------------------------~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~ 618 (915)
T PTZ00111 572 ---------------------------------ESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNK 618 (915)
T ss_pred ---------------------------------HHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCccc
Confidence 2233355555322 111123567889999752
Q ss_pred ------CCCccccCCCCcceEEE-eCCCCHHHHHHHHHHhh
Q 040638 359 ------RLDPALLRPGRMDVHIH-MSYCTLCGFKILASNYL 392 (419)
Q Consensus 359 ------~LdpALlrpGR~d~~I~-~~~~~~~~~~~l~~~~l 392 (419)
.|+++|+. |||...- ++.|+.+.=+.|+.+.+
T Consensus 619 s~~eni~Lp~~LLS--RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 619 AVIENINISPSLFT--RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred CcccccCCChHHhh--hhcEEEEecCCCChHHHHHHHHHHH
Confidence 36799999 9998744 57888877677766554
No 224
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.28 E-value=1.2e-05 Score=92.43 Aligned_cols=58 Identities=19% Similarity=0.204 Sum_probs=42.0
Q ss_pred eccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 184 ILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 184 ~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
....+..++.++|.++..+++...+.. +....+-+.++||+|+||||||+++++.+..
T Consensus 176 ~~~~~~~~~~~vG~~~~l~~l~~lL~l-----------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~ 233 (1153)
T PLN03210 176 NLTPSNDFEDFVGIEDHIAKMSSLLHL-----------ESEEVRMVGIWGSSGIGKTTIARALFSRLSR 233 (1153)
T ss_pred ccccCcccccccchHHHHHHHHHHHcc-----------ccCceEEEEEEcCCCCchHHHHHHHHHHHhh
Confidence 344556788999988887777654421 1122345889999999999999999888743
No 225
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.27 E-value=1.3e-05 Score=75.42 Aligned_cols=163 Identities=18% Similarity=0.234 Sum_probs=105.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-CCcEE---------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFDVY--------- 255 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~--------- 255 (419)
-.|.+|+.+....+....+..... .. .. ..+++|||+|+||-|.+-|+-+++ |..+.
T Consensus 7 yrpksl~~l~~~~e~~~~Lksl~~-----~~-------d~-PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~ 73 (351)
T KOG2035|consen 7 YRPKSLDELIYHEELANLLKSLSS-----TG-------DF-PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTF 73 (351)
T ss_pred cCcchhhhcccHHHHHHHHHHhcc-----cC-------CC-CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEE
Confidence 467788887777666665533221 11 01 249999999999999999999887 22111
Q ss_pred ------EEEeccc-------------C--ChHHHHHHHHHccC-----------CeEEEEecCcccccccchhhhccCCC
Q 040638 256 ------DLELSSV-------------E--GNKHLRKVLIATEN-----------KSILVVEDIDCCTELQDRSAQARTAS 303 (419)
Q Consensus 256 ------~l~l~~~-------------~--~~~~l~~l~~~~~~-----------~sIlviddiD~~~~~~~~~~~~~~~~ 303 (419)
.++++.+ + +..-+.+++.+..+ --++||-|.|.+..
T Consensus 74 ~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~------------ 141 (351)
T KOG2035|consen 74 TTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR------------ 141 (351)
T ss_pred ecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH------------
Confidence 1222211 1 11223444443321 24788989886632
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHH
Q 040638 304 PYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCG 383 (419)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~ 383 (419)
.....|-.-|....+ .+.+|+.+|...+|-+++.. |+ ..|.+|-|+.++
T Consensus 142 ------------------------dAQ~aLRRTMEkYs~----~~RlIl~cns~SriIepIrS--RC-l~iRvpaps~ee 190 (351)
T KOG2035|consen 142 ------------------------DAQHALRRTMEKYSS----NCRLILVCNSTSRIIEPIRS--RC-LFIRVPAPSDEE 190 (351)
T ss_pred ------------------------HHHHHHHHHHHHHhc----CceEEEEecCcccchhHHhh--he-eEEeCCCCCHHH
Confidence 111123334444433 35578899999999999997 75 668999999999
Q ss_pred HHHHHHHhhCCCCCCChHHHH
Q 040638 384 FKILASNYLGITEHPLFSEVE 404 (419)
Q Consensus 384 ~~~l~~~~l~~~~~~l~~~i~ 404 (419)
...++...+..++..+..++.
T Consensus 191 I~~vl~~v~~kE~l~lp~~~l 211 (351)
T KOG2035|consen 191 ITSVLSKVLKKEGLQLPKELL 211 (351)
T ss_pred HHHHHHHHHHHhcccCcHHHH
Confidence 999999999999887776654
No 226
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.22 E-value=3.1e-06 Score=81.17 Aligned_cols=165 Identities=16% Similarity=0.186 Sum_probs=100.2
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc-----
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD----- 253 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~----- 253 (419)
.|.+ -.+|...+++++..++...+.+ +... .+.+ ..|+|||||||||+.+.|.|+.+-.+
T Consensus 30 pwve--kyrP~~l~dv~~~~ei~st~~~----~~~~------~~lP---h~L~YgPPGtGktsti~a~a~~ly~~~~~~~ 94 (360)
T KOG0990|consen 30 PWVE--KYRPPFLGIVIKQEPIWSTENR----YSGM------PGLP---HLLFYGPPGTGKTSTILANARDFYSPHPTTS 94 (360)
T ss_pred CCcc--CCCCchhhhHhcCCchhhHHHH----hccC------CCCC---cccccCCCCCCCCCchhhhhhhhcCCCCchh
Confidence 4544 4578889999988766655543 2111 1122 69999999999999999999988442
Q ss_pred -EEEEEecccCChHHH---HHHHHHcc---------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHH
Q 040638 254 -VYDLELSSVEGNKHL---RKVLIATE---------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNL 320 (419)
Q Consensus 254 -v~~l~l~~~~~~~~l---~~l~~~~~---------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (419)
+..++.++-.+-... ...|..+. ..-.+++||.|++..
T Consensus 95 m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~----------------------------- 145 (360)
T KOG0990|consen 95 MLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTR----------------------------- 145 (360)
T ss_pred HHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhH-----------------------------
Confidence 123333332221112 22343333 456889999997642
Q ss_pred HHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCCh
Q 040638 321 ILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLF 400 (419)
Q Consensus 321 ~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~ 400 (419)
.....|-..+..+ ..+..+..-+|++..+.||+.. |+.. ..+...+..+-.....+....+.....
T Consensus 146 -------~AQnALRRviek~----t~n~rF~ii~n~~~ki~pa~qs--Rctr-frf~pl~~~~~~~r~shi~e~e~~~~~ 211 (360)
T KOG0990|consen 146 -------DAQNALRRVIEKY----TANTRFATISNPPQKIHPAQQS--RCTR-FRFAPLTMAQQTERQSHIRESEQKETN 211 (360)
T ss_pred -------HHHHHHHHHHHHh----ccceEEEEeccChhhcCchhhc--cccc-CCCCCCChhhhhhHHHHHHhcchhhcC
Confidence 0111111233333 1234455778999999999997 6633 566777777777777777776654443
Q ss_pred H
Q 040638 401 S 401 (419)
Q Consensus 401 ~ 401 (419)
+
T Consensus 212 ~ 212 (360)
T KOG0990|consen 212 P 212 (360)
T ss_pred H
Confidence 3
No 227
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.22 E-value=5.3e-06 Score=70.18 Aligned_cols=37 Identities=38% Similarity=0.538 Sum_probs=29.2
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc--------CCcEEEEEecccC
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL--------HFDVYDLELSSVE 263 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l--------~~~v~~l~l~~~~ 263 (419)
+.++++||||+|||++++.++..+ +.++..+.+....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCC
Confidence 458899999999999999999988 6777777776553
No 228
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.19 E-value=3.7e-05 Score=79.83 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=95.4
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~ 266 (419)
.+.+++|.....+.+.+.+.... .....+++.|++||||+++++++.... +.+++.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~ 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLS-----------RSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL 204 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHh-----------ccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH
Confidence 34566776655555555554322 113459999999999999999999886 4688999998874332
Q ss_pred HHHHHHHH-----------------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 267 HLRKVLIA-----------------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 267 ~l~~l~~~-----------------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
.-..+|.. ....+.+||||||.+.. ..
T Consensus 205 ~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------------------------------~~ 248 (469)
T PRK10923 205 IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------------------------------DV 248 (469)
T ss_pred HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------------------------------HH
Confidence 22333321 22457889999997743 12
Q ss_pred HHhHHHHhcCcc-cCCCC------CEEEEEecCCC-------CCCCccccCCCCc-ceEEEeCCCCH--HHHHHHHHHhh
Q 040638 330 TFGLLNFTNGLW-SSSGD------ERIIVFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTL--CGFKILASNYL 392 (419)
Q Consensus 330 ls~Ll~~ldg~~-s~~g~------~~iiV~tTN~~-------~~LdpALlrpGR~-d~~I~~~~~~~--~~~~~l~~~~l 392 (419)
...|+.+++.-. ...|+ .+.+|+||+.. ..+.+.|.. |+ ..+|++|.... ++...|+..|+
T Consensus 249 q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~--~l~~~~i~~PpLreR~~Di~~l~~~~l 326 (469)
T PRK10923 249 QTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFH--RLNVIRVHLPPLRERREDIPRLARHFL 326 (469)
T ss_pred HHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHH--HhcceeecCCCcccchhhHHHHHHHHH
Confidence 223555554321 11111 23566777642 245566665 66 57778777643 66777888887
Q ss_pred CC
Q 040638 393 GI 394 (419)
Q Consensus 393 ~~ 394 (419)
..
T Consensus 327 ~~ 328 (469)
T PRK10923 327 QV 328 (469)
T ss_pred HH
Confidence 53
No 229
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.19 E-value=2e-05 Score=75.97 Aligned_cols=143 Identities=23% Similarity=0.212 Sum_probs=74.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHH--cC--Cc-EEEEEecccCChH------------------------HHHHHHHH--c
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANY--LH--FD-VYDLELSSVEGNK------------------------HLRKVLIA--T 275 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~--l~--~~-v~~l~l~~~~~~~------------------------~l~~l~~~--~ 275 (419)
+-+.|+|++|+|||+||..+++. .. ++ ++-+.+....... .+...+.. .
T Consensus 20 ~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~~L~ 99 (287)
T PF00931_consen 20 RVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRELLK 99 (287)
T ss_dssp EEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHHHHC
T ss_pred EEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 34889999999999999999987 32 32 2334443321111 11111111 1
Q ss_pred cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecC
Q 040638 276 ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTN 355 (419)
Q Consensus 276 ~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN 355 (419)
..+++||+||++... .+..+...+-. .. .+..||+||.
T Consensus 100 ~~~~LlVlDdv~~~~--------------------------------------~~~~l~~~~~~---~~-~~~kilvTTR 137 (287)
T PF00931_consen 100 DKRCLLVLDDVWDEE--------------------------------------DLEELREPLPS---FS-SGSKILVTTR 137 (287)
T ss_dssp CTSEEEEEEEE-SHH--------------------------------------HH-------HC---HH-SS-EEEEEES
T ss_pred cccceeeeeeecccc--------------------------------------ccccccccccc---cc-cccccccccc
Confidence 348999999987321 11112211111 11 1234566776
Q ss_pred CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC----CCChHHHHHHHhcCCCCcc
Q 040638 356 HKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITE----HPLFSEVEELIEQTKVTPA 415 (419)
Q Consensus 356 ~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~----~~l~~~i~~l~~~~~~tpa 415 (419)
...... .. +.-+..++++..+.++..+++..+..... ..+.+....+++..+..|.
T Consensus 138 ~~~v~~-~~---~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPL 197 (287)
T PF00931_consen 138 DRSVAG-SL---GGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPL 197 (287)
T ss_dssp CGGGGT-TH---HSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HH
T ss_pred cccccc-cc---cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 532211 11 11267899999999999999999987543 2233344555555555543
No 230
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=2.2e-05 Score=75.89 Aligned_cols=69 Identities=17% Similarity=0.267 Sum_probs=50.5
Q ss_pred cccchhhHHHHHHHHHHHhhchhhhhhcC-ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 194 LAMVTDMKKMIMDDLERFLKRKDYYRRVG-KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 194 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
++|+.+.|+.+--.|..-..+...-..+- --.|+.+|..||.|+|||-+++-+|...+.+++.++.+.+
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 67999999988766655443332222221 1246789999999999999999999999998887766543
No 231
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.19 E-value=3.7e-05 Score=79.17 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=58.0
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHH
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKH 267 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~ 267 (419)
+..+++.....+.+.+.+.... .....++++|++||||+++++++.... +.+++.++|..+.. ..
T Consensus 138 ~~~lig~s~~~~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-~~ 205 (445)
T TIGR02915 138 LRGLITSSPGMQKICRTIEKIA-----------PSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-NL 205 (445)
T ss_pred ccceeecCHHHHHHHHHHHHHh-----------CCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-HH
Confidence 4445555555555555443322 123458999999999999999998776 35788999988743 33
Q ss_pred HHH-HHHH-----------------ccCCeEEEEecCcccc
Q 040638 268 LRK-VLIA-----------------TENKSILVVEDIDCCT 290 (419)
Q Consensus 268 l~~-l~~~-----------------~~~~sIlviddiD~~~ 290 (419)
+.. +|.. ....+.|||||||.+.
T Consensus 206 ~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~ 246 (445)
T TIGR02915 206 LESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLP 246 (445)
T ss_pred HHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCC
Confidence 333 2321 1346889999999774
No 232
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.18 E-value=3.5e-05 Score=74.40 Aligned_cols=122 Identities=16% Similarity=0.163 Sum_probs=80.8
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcC----------------CcEEEEEeccc---CChHHHHHHHHHcc------CCe
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLH----------------FDVYDLELSSV---EGNKHLRKVLIATE------NKS 279 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~----------------~~v~~l~l~~~---~~~~~l~~l~~~~~------~~s 279 (419)
.+..|||+||+|+||+++|.++|..+- .|++.+....- -+-..+|.+..... ..-
T Consensus 18 l~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~k 97 (290)
T PRK05917 18 VPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESPYK 97 (290)
T ss_pred cCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCCce
Confidence 355799999999999999999998772 34544432111 12234454443332 235
Q ss_pred EEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCC
Q 040638 280 ILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDR 359 (419)
Q Consensus 280 IlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~ 359 (419)
|++|+++|.+.. .....||..++.. .+..++|+.|+.++.
T Consensus 98 v~ii~~ad~mt~------------------------------------~AaNaLLK~LEEP----p~~~~fiL~~~~~~~ 137 (290)
T PRK05917 98 IYIIHEADRMTL------------------------------------DAISAFLKVLEDP----PQHGVIILTSAKPQR 137 (290)
T ss_pred EEEEechhhcCH------------------------------------HHHHHHHHHhhcC----CCCeEEEEEeCChhh
Confidence 889999997632 2344577777765 456889999999999
Q ss_pred CCccccCCCCcceEEEeCCC-----CHHHHHHHHH
Q 040638 360 LDPALLRPGRMDVHIHMSYC-----TLCGFKILAS 389 (419)
Q Consensus 360 LdpALlrpGR~d~~I~~~~~-----~~~~~~~l~~ 389 (419)
|-|.+++ |+ ..+.|+.+ +.++...++.
T Consensus 138 ll~TI~S--Rc-q~~~~~~~~~~~i~~~~~~~l~~ 169 (290)
T PRK05917 138 LPPTIRS--RS-LSIHIPMEEKTLVSKEDIAYLIG 169 (290)
T ss_pred CcHHHHh--cc-eEEEccchhccCCCHHHHHHHHH
Confidence 9999998 76 55667643 3444445444
No 233
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.16 E-value=4.7e-05 Score=78.81 Aligned_cols=153 Identities=16% Similarity=0.212 Sum_probs=94.1
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHH
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHL 268 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l 268 (419)
..+++....-.++...+..... ....+++.|.+||||+++++++.... +.+++.++|..+.. ..+
T Consensus 134 ~~lig~s~~~~~v~~~i~~~a~-----------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-~~~ 201 (463)
T TIGR01818 134 AELIGEAPAMQEVFRAIGRLSR-----------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-DLI 201 (463)
T ss_pred cceeecCHHHHHHHHHHHHHhC-----------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-HHH
Confidence 3456666556666655544321 13358999999999999999998775 45788999988743 333
Q ss_pred HH-HHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 269 RK-VLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 269 ~~-l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
.. +|. ....++.|||||||.+.. ...
T Consensus 202 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------------------------------~~q 245 (463)
T TIGR01818 202 ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------------------------------DAQ 245 (463)
T ss_pred HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------------------------------HHH
Confidence 33 322 122468899999997743 122
Q ss_pred HhHHHHhcCc-ccCCC------CCEEEEEecCCC-------CCCCccccCCCCcc-eEEEeCCCC--HHHHHHHHHHhhC
Q 040638 331 FGLLNFTNGL-WSSSG------DERIIVFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCT--LCGFKILASNYLG 393 (419)
Q Consensus 331 s~Ll~~ldg~-~s~~g------~~~iiV~tTN~~-------~~LdpALlrpGR~d-~~I~~~~~~--~~~~~~l~~~~l~ 393 (419)
..|+.+++.- ....| -...+|+||+.. ..+.+.|.. |+. .+|++|... .++...|+..|+.
T Consensus 246 ~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~ 323 (463)
T TIGR01818 246 TRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFH--RLNVIRIHLPPLRERREDIPRLARHFLA 323 (463)
T ss_pred HHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHH--HhCcceecCCCcccchhhHHHHHHHHHH
Confidence 3355555422 11111 124566676543 234445544 444 488998887 6888888888875
Q ss_pred C
Q 040638 394 I 394 (419)
Q Consensus 394 ~ 394 (419)
.
T Consensus 324 ~ 324 (463)
T TIGR01818 324 L 324 (463)
T ss_pred H
Confidence 3
No 234
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.15 E-value=1.1e-05 Score=80.99 Aligned_cols=158 Identities=14% Similarity=0.126 Sum_probs=105.0
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEecccCC
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLELSSVEG 264 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l~~~~~ 264 (419)
..+++|+|....-+++++.+..+- +....+|++|++||||+.+|++|.... ..+++.++|..+..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~a-----------p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYA-----------PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhC-----------CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 478999998888888888776621 123349999999999999999998443 56899999999976
Q ss_pred hHHHHHHHHHc-----------------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHH
Q 040638 265 NKHLRKVLIAT-----------------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERI 327 (419)
Q Consensus 265 ~~~l~~l~~~~-----------------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (419)
+-...++|... ....+||+|||..+..
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~------------------------------------ 187 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPP------------------------------------ 187 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCH------------------------------------
Confidence 66666666422 2468999999986643
Q ss_pred HHHHhHHHHhcCc-cc----C--CCCCEEEEEecCC-C-CCCCc--ccc-CCCCcceEEEeCCCCH--HHHHHHHHHhhC
Q 040638 328 LETFGLLNFTNGL-WS----S--SGDERIIVFTTNH-K-DRLDP--ALL-RPGRMDVHIHMSYCTL--CGFKILASNYLG 393 (419)
Q Consensus 328 ~~ls~Ll~~ldg~-~s----~--~g~~~iiV~tTN~-~-~~Ldp--ALl-rpGR~d~~I~~~~~~~--~~~~~l~~~~l~ 393 (419)
.....|+.++|.- +. . -...+.+|++||- + +.+-. .|. | |+...|.+|.... +++..|+..|+.
T Consensus 188 ~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~g~dl~~r--l~~~~I~LPpLrER~~Di~~L~e~Fl~ 265 (403)
T COG1221 188 EGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLAGADLTRR--LNILTITLPPLRERKEDILLLAEHFLK 265 (403)
T ss_pred hHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHhhcchhhh--hcCceecCCChhhchhhHHHHHHHHHH
Confidence 1222356666542 11 1 1124566666652 2 22222 333 4 7788888887754 677788888887
Q ss_pred CC
Q 040638 394 IT 395 (419)
Q Consensus 394 ~~ 395 (419)
..
T Consensus 266 ~~ 267 (403)
T COG1221 266 SE 267 (403)
T ss_pred HH
Confidence 53
No 235
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.14 E-value=2.3e-05 Score=80.91 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=46.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHHHHHHH-----------------ccCCeEEEEecC
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIA-----------------TENKSILVVEDI 286 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~~l~~~-----------------~~~~sIlviddi 286 (419)
..++++|++||||+++++++.... +.+++.++|..+.....-..+|.. ....++||||||
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 359999999999999999998765 468899999887533222233321 124579999999
Q ss_pred cccc
Q 040638 287 DCCT 290 (419)
Q Consensus 287 D~~~ 290 (419)
|.+.
T Consensus 247 ~~l~ 250 (457)
T PRK11361 247 GEMP 250 (457)
T ss_pred hhCC
Confidence 9874
No 236
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.13 E-value=4.7e-05 Score=77.83 Aligned_cols=75 Identities=23% Similarity=0.349 Sum_probs=53.2
Q ss_pred CCCCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 176 NHDTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 176 ~~~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
....|.. --.|++.++|+.-+...++|.+.+..+..... ....+-+||.||+||||||.++.||.++++.+.
T Consensus 68 ~~elW~e--Ky~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~------~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 68 EFELWVE--KYKPRTLEELAVHKKKISEVKQWLKQVAEFTP------KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ccchhHH--hcCcccHHHHhhhHHhHHHHHHHHHHHHHhcc------CCCceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 3446754 34799999999887777777766662221111 111234889999999999999999999999887
Q ss_pred EEE
Q 040638 256 DLE 258 (419)
Q Consensus 256 ~l~ 258 (419)
.-.
T Consensus 140 Ew~ 142 (634)
T KOG1970|consen 140 EWS 142 (634)
T ss_pred eec
Confidence 543
No 237
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.10 E-value=1.2e-05 Score=80.36 Aligned_cols=31 Identities=29% Similarity=0.542 Sum_probs=27.1
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
..+.++|+.||||+|+|||.|..+..+.+..
T Consensus 58 ~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 58 PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred cCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 3467899999999999999999999888754
No 238
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=2.7e-05 Score=84.79 Aligned_cols=91 Identities=21% Similarity=0.298 Sum_probs=59.7
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC------
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE------ 263 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~------ 263 (419)
.++|+++....|-+.+.....+- .+. .+.-.++|.||.|+|||-|++|+|.++ .-.++.+++++..
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl--~~~---~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskli 637 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGL--KDP---NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLI 637 (898)
T ss_pred hccchHHHHHHHHHHHHhhhccc--CCC---CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhcc
Confidence 46777777777777776554211 111 122238999999999999999999998 3457788887521
Q ss_pred -------ChHHHHHHHHHcc--CCeEEEEecCcc
Q 040638 264 -------GNKHLRKVLIATE--NKSILVVEDIDC 288 (419)
Q Consensus 264 -------~~~~l~~l~~~~~--~~sIlviddiD~ 288 (419)
+....-++..... .-+||+|||||.
T Consensus 638 gsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 638 GSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred CCCcccccchhHHHHHHHHhcCCceEEEEechhh
Confidence 2223333333332 359999999994
No 239
>PHA00729 NTP-binding motif containing protein
Probab=98.06 E-value=7e-06 Score=76.27 Aligned_cols=29 Identities=21% Similarity=0.490 Sum_probs=24.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
.++|+||||||||+||.+||..++.++..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~ 47 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNN 47 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccc
Confidence 59999999999999999999988644433
No 240
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.05 E-value=8.8e-06 Score=71.59 Aligned_cols=74 Identities=24% Similarity=0.376 Sum_probs=48.5
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-------------------ChHHHHHH-H--H
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-------------------GNKHLRKV-L--I 273 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-------------------~~~~l~~l-~--~ 273 (419)
+..+.+..+.| +.|.||+|+|||||+++|++.+..+-..+.+.... +....+++ + .
T Consensus 15 l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~ 94 (157)
T cd00267 15 LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARA 94 (157)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHH
Confidence 34444444555 88999999999999999999987665555443321 11112222 1 2
Q ss_pred HccCCeEEEEecCccccc
Q 040638 274 ATENKSILVVEDIDCCTE 291 (419)
Q Consensus 274 ~~~~~sIlviddiD~~~~ 291 (419)
-+.+|.++++||...-++
T Consensus 95 l~~~~~i~ilDEp~~~lD 112 (157)
T cd00267 95 LLLNPDLLLLDEPTSGLD 112 (157)
T ss_pred HhcCCCEEEEeCCCcCCC
Confidence 235789999999986665
No 241
>PRK15115 response regulator GlrR; Provisional
Probab=98.02 E-value=8.8e-05 Score=76.42 Aligned_cols=63 Identities=19% Similarity=0.232 Sum_probs=46.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHH-HHHHH-----------------ccCCeEEEEec
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLR-KVLIA-----------------TENKSILVVED 285 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~-~l~~~-----------------~~~~sIlvidd 285 (419)
..++++|++||||+++++++.... +.+++.++|..+.. ..+. .+|.. ....+.|||||
T Consensus 158 ~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 158 VSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-QLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-HHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 359999999999999999998875 46889999988743 3333 23321 23457899999
Q ss_pred Ccccc
Q 040638 286 IDCCT 290 (419)
Q Consensus 286 iD~~~ 290 (419)
||.+.
T Consensus 237 i~~l~ 241 (444)
T PRK15115 237 IGDMP 241 (444)
T ss_pred cccCC
Confidence 99874
No 242
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.01 E-value=5.7e-05 Score=71.56 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=74.7
Q ss_pred cccCceEEeCCCCCcHHHHHHHHHHHcC----------------------CcEEEEEecc-cCChHHHHHHHHHc---c-
Q 040638 224 AWKRGYLLFGPLGTGKSSLIAAMANYLH----------------------FDVYDLELSS-VEGNKHLRKVLIAT---E- 276 (419)
Q Consensus 224 ~~~rG~LL~GPpGtGKTsL~~aiA~~l~----------------------~~v~~l~l~~-~~~~~~l~~l~~~~---~- 276 (419)
..+..+||+||+|+||..+|.++|..+- .|++.+.-.. .-.-+.++++.... +
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4567899999999999999999998762 2333321110 00223344433221 1
Q ss_pred ---CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEe
Q 040638 277 ---NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353 (419)
Q Consensus 277 ---~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~t 353 (419)
..-|++|+++|.+- ......||..++.. ....++|++
T Consensus 85 e~~~~KV~II~~ae~m~------------------------------------~~AaNaLLK~LEEP----p~~t~fiLi 124 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLN------------------------------------KQSANSLLKLIEEP----PKNTYGIFT 124 (261)
T ss_pred hcCCCEEEEeccHhhhC------------------------------------HHHHHHHHHhhcCC----CCCeEEEEE
Confidence 24688888888653 23445577777665 456899999
Q ss_pred cCCCCCCCccccCCCCcceEEEeCCC
Q 040638 354 TNHKDRLDPALLRPGRMDVHIHMSYC 379 (419)
Q Consensus 354 TN~~~~LdpALlrpGR~d~~I~~~~~ 379 (419)
|+.++.|-|.+++ |+ ..+.++.+
T Consensus 125 t~~~~~lLpTI~S--RC-q~~~~~~~ 147 (261)
T PRK05818 125 TRNENNILNTILS--RC-VQYVVLSK 147 (261)
T ss_pred ECChHhCchHhhh--he-eeeecCCh
Confidence 9999999999998 76 44666665
No 243
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.00 E-value=7.8e-05 Score=72.64 Aligned_cols=121 Identities=12% Similarity=0.135 Sum_probs=85.2
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc--------CC-----cEEEEE--ecccCChHHHHHHHHHc-------cCCeEEEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL--------HF-----DVYDLE--LSSVEGNKHLRKVLIAT-------ENKSILVV 283 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l--------~~-----~v~~l~--l~~~~~~~~l~~l~~~~-------~~~sIlvi 283 (419)
...|||+|+.|.||++++.++|+.+ +. ++..++ ...+ .-..++.+.... ..+-|++|
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i-~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDL-SKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcC-CHHHHHHHHHHhccCCcccCCceEEEE
Confidence 4569999999999999999999887 11 223333 2112 234566655433 25679999
Q ss_pred ecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCcc
Q 040638 284 EDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPA 363 (419)
Q Consensus 284 ddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpA 363 (419)
+++|.+.. .....||..++.. ++..++|++|+.++.|-|.
T Consensus 97 ~~~e~m~~------------------------------------~a~NaLLK~LEEP----p~~t~~il~~~~~~kll~T 136 (299)
T PRK07132 97 KNIEKTSN------------------------------------SLLNALLKTIEEP----PKDTYFLLTTKNINKVLPT 136 (299)
T ss_pred ecccccCH------------------------------------HHHHHHHHHhhCC----CCCeEEEEEeCChHhChHH
Confidence 99986521 2334577777775 4557888888888999999
Q ss_pred ccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 364 LLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 364 LlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
+.. |+ ..+++..++.++....+..
T Consensus 137 I~S--Rc-~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 137 IVS--RC-QVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred HHh--Ce-EEEECCCCCHHHHHHHHHH
Confidence 987 65 6699999999888766654
No 244
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.97 E-value=9.7e-06 Score=84.20 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=50.2
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-CCcEEEEEe
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFDVYDLEL 259 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~~l~l 259 (419)
+-.-|+++.|+++.+++|++.+.....+-+ ..++-++|.||||+|||||++++|+.+ .+++|.+..
T Consensus 71 ry~fF~d~yGlee~ieriv~~l~~Aa~gl~-------~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 71 RYPAFEEFYGMEEAIEQIVSYFRHAAQGLE-------EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred cccchhcccCcHHHHHHHHHHHHHHHHhcC-------CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 334689999999999999987755443211 123458899999999999999999988 467777654
No 245
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.97 E-value=4.3e-06 Score=82.89 Aligned_cols=160 Identities=24% Similarity=0.199 Sum_probs=83.5
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc---eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc----c---
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG---YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS----V--- 262 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG---~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~----~--- 262 (419)
++.|.+.+|..|+-.|. .+......-|. ..|| +||.|.||||||.|.+.++......+|.---+. +
T Consensus 25 ~i~g~~~iK~aill~L~---~~~~~~~~~~~-~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~s~~gLta~ 100 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLF---GGVEKNDPDGT-RIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGSSAAGLTAS 100 (331)
T ss_dssp TTTT-HHHHHHHCCCCT---T--SCCCCT-T-EE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGSTCCCCCEE
T ss_pred cCcCcHHHHHHHHHHHH---hcccccccccc-ccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCcccCCccce
Confidence 46678888888753222 11111111011 1233 999999999999999999877766665332211 1
Q ss_pred --CC----hHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 263 --EG----NKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 263 --~~----~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
.+ +-.+..=..-...++|.+|||+|.+-. .....|+..
T Consensus 101 ~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~------------------------------------~~~~~l~ea 144 (331)
T PF00493_consen 101 VSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKE------------------------------------DDRDALHEA 144 (331)
T ss_dssp ECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--C------------------------------------HHHHHHHHH
T ss_pred eccccccceeEEeCCchhcccCceeeecccccccc------------------------------------hHHHHHHHH
Confidence 11 101111011224679999999997633 112234445
Q ss_pred hcCcccC---------CCCCEEEEEecCCCC-------------CCCccccCCCCcceEEEe-CCCCHHHHHHHHHHhhC
Q 040638 337 TNGLWSS---------SGDERIIVFTTNHKD-------------RLDPALLRPGRMDVHIHM-SYCTLCGFKILASNYLG 393 (419)
Q Consensus 337 ldg~~s~---------~g~~~iiV~tTN~~~-------------~LdpALlrpGR~d~~I~~-~~~~~~~~~~l~~~~l~ 393 (419)
|+.-.-+ -.-+.-|++++|... .++++|+. |||..+.+ ..++.+.=..|+++.+.
T Consensus 145 MEqq~isi~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~ 222 (331)
T PF00493_consen 145 MEQQTISIAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILD 222 (331)
T ss_dssp HHCSCEEECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHT
T ss_pred HHcCeeccchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHh--hcCEEEEeccccccccccccceEEEe
Confidence 5432111 112356788888765 47899999 99998776 56676666677776666
Q ss_pred C
Q 040638 394 I 394 (419)
Q Consensus 394 ~ 394 (419)
.
T Consensus 223 ~ 223 (331)
T PF00493_consen 223 S 223 (331)
T ss_dssp T
T ss_pred c
Confidence 4
No 246
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.97 E-value=2.7e-05 Score=69.63 Aligned_cols=40 Identities=25% Similarity=0.420 Sum_probs=30.4
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+..+.+..+.| +.|.||+|+|||||+++|++.+...-+.+
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i 59 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence 44445555666 88999999999999999999986544433
No 247
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.96 E-value=0.00026 Score=68.61 Aligned_cols=119 Identities=18% Similarity=0.209 Sum_probs=79.2
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcC------------------------CcEEEEEeccc-CChHHHHHHHHHcc---
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLH------------------------FDVYDLELSSV-EGNKHLRKVLIATE--- 276 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~------------------------~~v~~l~l~~~-~~~~~l~~l~~~~~--- 276 (419)
.+.+|||+|| +||++++.++|..+- .|++.+.-..- -.-+.+|.+.....
T Consensus 23 l~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~~p 100 (290)
T PRK07276 23 LNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQSG 100 (290)
T ss_pred cceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhhCc
Confidence 3567999996 689999999997662 23333332110 12345665543332
Q ss_pred ---CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEe
Q 040638 277 ---NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353 (419)
Q Consensus 277 ---~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~t 353 (419)
..-|++||++|.+.. ...+.||..++.. +...++|++
T Consensus 101 ~~~~~kV~II~~ad~m~~------------------------------------~AaNaLLKtLEEP----p~~t~~iL~ 140 (290)
T PRK07276 101 YEGKQQVFIIKDADKMHV------------------------------------NAANSLLKVIEEP----QSEIYIFLL 140 (290)
T ss_pred ccCCcEEEEeehhhhcCH------------------------------------HHHHHHHHHhcCC----CCCeEEEEE
Confidence 346999999997632 3445577777765 456889999
Q ss_pred cCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 040638 354 TNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILAS 389 (419)
Q Consensus 354 TN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~ 389 (419)
|+.++.|-|.+++ |+ .+|.|+. +.++...++.
T Consensus 141 t~~~~~lLpTI~S--Rc-q~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 141 TNDENKVLPTIKS--RT-QIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred ECChhhCchHHHH--cc-eeeeCCC-cHHHHHHHHH
Confidence 9999999999998 76 6788866 5555444443
No 248
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.94 E-value=7e-06 Score=68.60 Aligned_cols=29 Identities=38% Similarity=0.662 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
|++.||||+||||+++.+|..+++.++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~ 30 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISM 30 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEe
Confidence 68999999999999999999998876644
No 249
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.94 E-value=3e-05 Score=68.76 Aligned_cols=75 Identities=20% Similarity=0.294 Sum_probs=48.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--C--h-H---------------HHHHH-H-
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--G--N-K---------------HLRKV-L- 272 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--~--~-~---------------~l~~l-~- 272 (419)
.+..+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+.... . . . ..+++ +
T Consensus 15 vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~la 94 (163)
T cd03216 15 ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIA 94 (163)
T ss_pred EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHH
Confidence 344555566666 88999999999999999999987655555443221 0 0 1 11111 1
Q ss_pred -HHccCCeEEEEecCccccc
Q 040638 273 -IATENKSILVVEDIDCCTE 291 (419)
Q Consensus 273 -~~~~~~sIlviddiD~~~~ 291 (419)
.-..+|.|+++||-..-++
T Consensus 95 ral~~~p~illlDEP~~~LD 114 (163)
T cd03216 95 RALARNARLLILDEPTAALT 114 (163)
T ss_pred HHHhcCCCEEEEECCCcCCC
Confidence 1235799999999876654
No 250
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.92 E-value=4.4e-05 Score=66.30 Aligned_cols=73 Identities=21% Similarity=0.252 Sum_probs=47.7
Q ss_pred hhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc--------CChHHHHHHH---HHccCCeEEEEec
Q 040638 219 RRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV--------EGNKHLRKVL---IATENKSILVVED 285 (419)
Q Consensus 219 ~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~--------~~~~~l~~l~---~~~~~~sIlvidd 285 (419)
+.+.+..+.| +.|.||+|+|||||++++++.+...-+.+.+... -+....+++. .-..+|.++++||
T Consensus 17 ~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDE 96 (144)
T cd03221 17 KDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDE 96 (144)
T ss_pred EeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3344444555 8899999999999999999998665444433211 1222333332 2246899999999
Q ss_pred Cccccc
Q 040638 286 IDCCTE 291 (419)
Q Consensus 286 iD~~~~ 291 (419)
-..-++
T Consensus 97 P~~~LD 102 (144)
T cd03221 97 PTNHLD 102 (144)
T ss_pred CccCCC
Confidence 986654
No 251
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.92 E-value=4.4e-05 Score=80.85 Aligned_cols=120 Identities=18% Similarity=0.120 Sum_probs=80.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCC--cEEEEEeccc----CChHHHHHHHHH-----------ccCCeEEEEecCccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHF--DVYDLELSSV----EGNKHLRKVLIA-----------TENKSILVVEDIDCC 289 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~--~v~~l~l~~~----~~~~~l~~l~~~-----------~~~~sIlviddiD~~ 289 (419)
.|++|-|++|||||+++++++..+.. ++..+-.+.- -+.-+|...+.. .....|||+||+..+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~ 105 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERL 105 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccC
Confidence 57999999999999999999999865 5544433221 122223333221 234689999999865
Q ss_pred ccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC---------cccCCCCCEEEEEecCCC---
Q 040638 290 TELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG---------LWSSSGDERIIVFTTNHK--- 357 (419)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg---------~~s~~g~~~iiV~tTN~~--- 357 (419)
- ..+++.|+..|+. .........++|+|-|..
T Consensus 106 ~------------------------------------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~ 149 (584)
T PRK13406 106 E------------------------------------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEED 149 (584)
T ss_pred C------------------------------------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcc
Confidence 3 3456667777643 211122345677764433
Q ss_pred CCCCccccCCCCcceEEEeCCCCHHHH
Q 040638 358 DRLDPALLRPGRMDVHIHMSYCTLCGF 384 (419)
Q Consensus 358 ~~LdpALlrpGR~d~~I~~~~~~~~~~ 384 (419)
..|.++|+. ||+++|.+++++..+.
T Consensus 150 ~~L~~~lLD--Rf~l~v~v~~~~~~~~ 174 (584)
T PRK13406 150 ERAPAALAD--RLAFHLDLDGLALRDA 174 (584)
T ss_pred cCCCHHhHh--heEEEEEcCCCChHHh
Confidence 568999999 9999999999987653
No 252
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.91 E-value=3.2e-05 Score=76.16 Aligned_cols=76 Identities=25% Similarity=0.281 Sum_probs=49.7
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--CcEEEEEecccCC----
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH--FDVYDLELSSVEG---- 264 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~--~~v~~l~l~~~~~---- 264 (419)
.+.++|+.+.++..---+.. .+. |+--.|++||.||||||||.|+-+||.+|+ .++..+..+.+-+
T Consensus 23 ~~GlVGQ~~AReAagiiv~m-Ik~-------~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~k 94 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIVDM-IKE-------GKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVK 94 (398)
T ss_dssp ETTEES-HHHHHHHHHHHHH-HHT-------T--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-
T ss_pred cccccChHHHHHHHHHHHHH-Hhc-------ccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccC
Confidence 56799999998877433332 222 223357899999999999999999999997 6777887777632
Q ss_pred -hHHHHHHHHH
Q 040638 265 -NKHLRKVLIA 274 (419)
Q Consensus 265 -~~~l~~l~~~ 274 (419)
.+.|.+.|.+
T Consensus 95 KTE~L~qa~Rr 105 (398)
T PF06068_consen 95 KTEALTQAFRR 105 (398)
T ss_dssp HHHHHHHHHHC
T ss_pred chHHHHHHHHH
Confidence 2345555543
No 253
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.90 E-value=0.00014 Score=63.32 Aligned_cols=22 Identities=41% Similarity=0.777 Sum_probs=20.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++++||||+|||+++..++..+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999887
No 254
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.90 E-value=8.9e-05 Score=81.28 Aligned_cols=187 Identities=20% Similarity=0.216 Sum_probs=116.3
Q ss_pred CCceeeeccCCCCccccccchhhHHHHHHHHHHHhh-chhhhhhcCcc-ccC-ceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 178 DTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLK-RKDYYRRVGKA-WKR-GYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 178 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~-~~~~~~~~g~~-~~r-G~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
..|.. -..|.....+.+.......+.+.+...-+ .+.-|...+-. ... ..+++||||.|||+.+.+.|..+++++
T Consensus 308 ~~~~~--k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v 385 (871)
T KOG1968|consen 308 AGWTE--KYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKV 385 (871)
T ss_pred ccccc--ccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccce
Confidence 34554 33455556777776666666666655411 11122222111 112 369999999999999999999999999
Q ss_pred EEEEecccCChHHHHHHHHHcc-------------------C-CeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 255 YDLELSSVEGNKHLRKVLIATE-------------------N-KSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 255 ~~l~l~~~~~~~~l~~l~~~~~-------------------~-~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
+..+.+...++..+...+..+. . .-||++||+|.+.. .+|..
T Consensus 386 ~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~-~dRg~----------------- 447 (871)
T KOG1968|consen 386 VEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG-EDRGG----------------- 447 (871)
T ss_pred eecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc-hhhhh-----------------
Confidence 9999988876666655443321 1 23889999997765 23221
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
..-++++... + .+=+|.|+|...-.....+. |-+.-|+|+-|+.++..--+..++..
T Consensus 448 ------------v~~l~~l~~k-----s----~~Piv~~cndr~~p~sr~~~--~~~~~l~f~kP~~~~i~~ri~si~~s 504 (871)
T KOG1968|consen 448 ------------VSKLSSLCKK-----S----SRPLVCTCNDRNLPKSRALS--RACSDLRFSKPSSELIRSRIMSICKS 504 (871)
T ss_pred ------------HHHHHHHHHh-----c----cCCeEEEecCCCCccccchh--hhcceeeecCCcHHHHHhhhhhhhcc
Confidence 2233334431 1 13477888876655543333 44477889999999988888888877
Q ss_pred CCCCChH-HHHHHH
Q 040638 395 TEHPLFS-EVEELI 407 (419)
Q Consensus 395 ~~~~l~~-~i~~l~ 407 (419)
+...+.+ .++.+.
T Consensus 505 e~~ki~~~~l~~~s 518 (871)
T KOG1968|consen 505 EGIKISDDVLEEIS 518 (871)
T ss_pred cceecCcHHHHHHH
Confidence 6554433 334433
No 255
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=97.85 E-value=5.6e-05 Score=67.65 Aligned_cols=41 Identities=27% Similarity=0.386 Sum_probs=31.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-..+
T Consensus 17 ~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i 59 (173)
T cd03246 17 VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59 (173)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence 344455566666 88999999999999999999886544433
No 256
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.85 E-value=0.0001 Score=71.14 Aligned_cols=152 Identities=17% Similarity=0.163 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---------CcEEEEEecccCChHHHHH-H
Q 040638 202 KMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---------FDVYDLELSSVEGNKHLRK-V 271 (419)
Q Consensus 202 ~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---------~~v~~l~l~~~~~~~~l~~-l 271 (419)
+++++.+...+..|.. .-..++||+|++|.|||++++..+.... .+|..++...-.+...+-. +
T Consensus 43 ~~~L~~L~~Ll~~P~~------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~I 116 (302)
T PF05621_consen 43 KEALDRLEELLEYPKR------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAI 116 (302)
T ss_pred HHHHHHHHHHHhCCcc------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHH
Confidence 4455667666655531 2235699999999999999999986542 3455665544333322221 1
Q ss_pred H-----------------------HHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 272 L-----------------------IATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 272 ~-----------------------~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
+ ...-+.-+|+|||++.++.-+.+ ++..
T Consensus 117 L~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~-----------------------------~qr~ 167 (302)
T PF05621_consen 117 LEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYR-----------------------------KQRE 167 (302)
T ss_pred HHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHH-----------------------------HHHH
Confidence 1 12234679999999987641111 1122
Q ss_pred HHHhHHHHhcCcccCCCCCEEEEEecCCC--CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 329 ETFGLLNFTNGLWSSSGDERIIVFTTNHK--DRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 329 ~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~--~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
++|.+-.+.+...-..+.|+|-.-. =.-|+.|-+ ||+.+.-=.+-..+++..|+..+-..
T Consensus 168 ----~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef~~LL~s~e~~ 229 (302)
T PF05621_consen 168 ----FLNALKFLGNELQIPIVGVGTREAYRALRTDPQLAS--RFEPFELPRWELDEEFRRLLASFERA 229 (302)
T ss_pred ----HHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHHHHHHHHHHHh
Confidence 2333333322212124444444322 234788888 99775433355567788888777553
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.83 E-value=0.00021 Score=73.46 Aligned_cols=65 Identities=17% Similarity=0.236 Sum_probs=48.0
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHHH-HHH-----------------HccCCeEEEEe
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRK-VLI-----------------ATENKSILVVE 284 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~~-l~~-----------------~~~~~sIlvid 284 (419)
...++++|.+||||+++++++.... +.+++.++|..+.. ..+.. +|. ....++.||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld 240 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-SLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLD 240 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-HHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEe
Confidence 3459999999999999999998765 46799999987753 33433 222 12346889999
Q ss_pred cCccccc
Q 040638 285 DIDCCTE 291 (419)
Q Consensus 285 diD~~~~ 291 (419)
|||.+..
T Consensus 241 ei~~l~~ 247 (441)
T PRK10365 241 EIGDISP 247 (441)
T ss_pred ccccCCH
Confidence 9998743
No 258
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.83 E-value=0.00018 Score=81.28 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=89.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHH--------------------HHHccCCeEEEEec
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKV--------------------LIATENKSILVVED 285 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l--------------------~~~~~~~sIlvidd 285 (419)
.+++||-|.||.|||+|+.|+|+..|-....++++.- ..|..+ +..+....-+++||
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQ---TdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDE 1619 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQ---TDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDE 1619 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeecccc---chHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeeh
Confidence 4579999999999999999999999999999998764 233333 33345667888888
Q ss_pred CcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC----------CCCCEEEEEecC
Q 040638 286 IDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS----------SGDERIIVFTTN 355 (419)
Q Consensus 286 iD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~----------~g~~~iiV~tTN 355 (419)
+... .+..+.||-..+|..-.. +.....|++|-|
T Consensus 1620 iNLa------------------------------------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqN 1663 (4600)
T COG5271 1620 INLA------------------------------------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQN 1663 (4600)
T ss_pred hhhh------------------------------------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecC
Confidence 8732 244556666665543211 233344445555
Q ss_pred CC------CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 356 HK------DRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 356 ~~------~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
+- ..|+..++. || ..|.|.-.+.++...|++..+..
T Consensus 1664 Pq~qggGRKgLPkSF~n--RF-svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1664 PQDQGGGRKGLPKSFLN--RF-SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred chhcCCCcccCCHHHhh--hh-heEEecccccchHHHHHHhhCCc
Confidence 33 468999998 99 55899999999888888876653
No 259
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.82 E-value=7.8e-05 Score=69.22 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.7
Q ss_pred CceEEeCCCCCcHHHHHHHHH
Q 040638 227 RGYLLFGPLGTGKSSLIAAMA 247 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA 247 (419)
+.++|.||+|+||||++++++
T Consensus 30 ~~~~itGpNg~GKStlLk~i~ 50 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVA 50 (213)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 569999999999999999998
No 260
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=97.77 E-value=0.00011 Score=66.12 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=32.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~ 61 (178)
T cd03247 17 VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITL 61 (178)
T ss_pred ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 345555666666 8899999999999999999988655444433
No 261
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=0.00016 Score=64.66 Aligned_cols=49 Identities=20% Similarity=0.387 Sum_probs=39.9
Q ss_pred hchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 213 KRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 213 ~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.....|..+++.+..| +.+.||+|+|||||.+.+|+.+..+-..+....
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~ 63 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQG 63 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecC
Confidence 3445677788777777 778899999999999999999988877776653
No 262
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.77 E-value=0.00013 Score=64.96 Aligned_cols=38 Identities=37% Similarity=0.507 Sum_probs=29.3
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
++.+.+....| +.|.||+|+|||||+++|++.+...-.
T Consensus 17 l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (166)
T cd03223 17 LKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG 56 (166)
T ss_pred eecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 44445555556 899999999999999999998865433
No 263
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.77 E-value=8.4e-05 Score=77.66 Aligned_cols=167 Identities=19% Similarity=0.204 Sum_probs=90.5
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcC-ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc--c------C
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVG-KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS--V------E 263 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~--~------~ 263 (419)
.+-+.+++|+.++- ..|=+...-+.+.| +.-.-.+||+|.||||||-|.+.+++.+..-+|.---.+ + .
T Consensus 430 sIye~edvKkglLL--qLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVt 507 (804)
T KOG0478|consen 430 SIYELEDVKKGLLL--QLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVT 507 (804)
T ss_pred hhhcccchhhhHHH--HHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEE
Confidence 34577888888853 23333333344433 111123999999999999999999999977666321100 0 1
Q ss_pred ChHHHHHHHHHc-----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 GNKHLRKVLIAT-----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ~~~~l~~l~~~~-----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
.+.+-+++..+. ...+|-.|||+|.+.+.....- ...+ ++.|++ -..-
T Consensus 508 rd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvL----------------hEvM--------EQQTvS---IAKA 560 (804)
T KOG0478|consen 508 KDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVL----------------HEVM--------EQQTLS---IAKA 560 (804)
T ss_pred ecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHH----------------HHHH--------HHhhhh---Hhhc
Confidence 111122222221 3467888999997744111110 1111 122222 1223
Q ss_pred CcccCCCCCEEEEEecCCCC-------------CCCccccCCCCcceEEEe-CCCCHHHHHHHHHH
Q 040638 339 GLWSSSGDERIIVFTTNHKD-------------RLDPALLRPGRMDVHIHM-SYCTLCGFKILASN 390 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~-------------~LdpALlrpGR~d~~I~~-~~~~~~~~~~l~~~ 390 (419)
|+..+-+...=|+++.|..+ .|+|.|++ |||...-+ ..|+...=+.|+.+
T Consensus 561 GII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS--RFDLIylllD~~DE~~Dr~La~H 624 (804)
T KOG0478|consen 561 GIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS--RFDLIFLLLDKPDERSDRRLADH 624 (804)
T ss_pred ceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--hhcEEEEEecCcchhHHHHHHHH
Confidence 44444333445788888442 36899999 99987554 45555433444444
No 264
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=97.75 E-value=0.00023 Score=73.08 Aligned_cols=93 Identities=18% Similarity=0.225 Sum_probs=67.9
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecc
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSS 261 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~ 261 (419)
+..+-+|++++|....-.++++.+.... +....+||.|.+||||..+|++|.+.. +.+++.++|..
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A-----------~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaA 306 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIA-----------KTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAA 306 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhc-----------CCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEeccc
Confidence 4456689999998877777776665543 224569999999999999999999877 57899999988
Q ss_pred cCChHHHH-HHHHH------------------ccCCeEEEEecCccc
Q 040638 262 VEGNKHLR-KVLIA------------------TENKSILVVEDIDCC 289 (419)
Q Consensus 262 ~~~~~~l~-~l~~~------------------~~~~sIlviddiD~~ 289 (419)
+. +.-|. .+|.. ..+.+-||+|||..+
T Consensus 307 iP-e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem 352 (560)
T COG3829 307 IP-ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM 352 (560)
T ss_pred CC-HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC
Confidence 84 22332 33311 123578899999765
No 265
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=2.6e-05 Score=69.61 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=28.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
-+++.||||+||||+++.+++.++.++++++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD 33 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLD 33 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecc
Confidence 3889999999999999999999999988776
No 266
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.72 E-value=0.00014 Score=65.56 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=42.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----C-----ChHHHHHH-H--HHccCCeEEEEecCccccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV-----E-----GNKHLRKV-L--IATENKSILVVEDIDCCTE 291 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~-----~-----~~~~l~~l-~--~~~~~~sIlviddiD~~~~ 291 (419)
+.|.||+|+|||||+++|++.+..+-..+.+... . +....+++ + .-...|.++++||--.-++
T Consensus 28 ~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD 103 (177)
T cd03222 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLD 103 (177)
T ss_pred EEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCC
Confidence 8899999999999999999988665554444321 0 11112222 1 2236799999999876554
No 267
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.72 E-value=3.2e-05 Score=68.69 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=29.9
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.+..++|+|||||||||+++++|..+++.+++.+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3556999999999999999999999999888653
No 268
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.71 E-value=6.3e-05 Score=63.28 Aligned_cols=50 Identities=18% Similarity=0.185 Sum_probs=41.5
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.|.|++-+++.|+..+..++..+ .+++. +.|+||||||||.+++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 57899999999999999998664 12233 5699999999999999999976
No 269
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.71 E-value=0.00021 Score=65.78 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=30.3
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSS 261 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~ 261 (419)
|++..+-++++||||||||+++..+|... +..+..++...
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 45555559999999999999999887544 55677776654
No 270
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.70 E-value=6.6e-05 Score=73.16 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=45.2
Q ss_pred EEEEEecCC------------CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHh
Q 040638 348 RIIVFTTNH------------KDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIE 408 (419)
Q Consensus 348 ~iiV~tTN~------------~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~ 408 (419)
-|+|++||+ |..|+..|+. |+ ..|.....+.++.++|++.-...++..+.++.-+++.
T Consensus 321 PIii~AtNRG~~kiRGTd~~sPhGIP~DlLD--Rl-lII~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~ 390 (450)
T COG1224 321 PIIILATNRGMTKIRGTDIESPHGIPLDLLD--RL-LIISTRPYSREEIREIIRIRAKEEDIELSDDALEYLT 390 (450)
T ss_pred cEEEEEcCCceeeecccCCcCCCCCCHhhhh--he-eEEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHH
Confidence 488889985 5678888887 77 6677777888999999999888888888776544443
No 271
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.66 E-value=0.00085 Score=67.71 Aligned_cols=25 Identities=44% Similarity=0.771 Sum_probs=22.3
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++-++|+||+|+||||+++-+|..+
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4558999999999999999999876
No 272
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.66 E-value=0.00029 Score=64.67 Aligned_cols=69 Identities=16% Similarity=0.241 Sum_probs=43.5
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEE-----------EEEecc---cC--------ChHHHHHHHHHc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVY-----------DLELSS---VE--------GNKHLRKVLIAT 275 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~-----------~l~l~~---~~--------~~~~l~~l~~~~ 275 (419)
+...+-++|.||+|+||||++++|+... +.++- ...++. +. .-..+.+++...
T Consensus 22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~ 101 (199)
T cd03283 22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA 101 (199)
T ss_pred EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence 3334568999999999999999998643 33220 000000 00 113455667776
Q ss_pred c--CCeEEEEecCccccc
Q 040638 276 E--NKSILVVEDIDCCTE 291 (419)
Q Consensus 276 ~--~~sIlviddiD~~~~ 291 (419)
. .|.++++||.-.-++
T Consensus 102 ~~~~p~llllDEp~~glD 119 (199)
T cd03283 102 KKGEPVLFLLDEIFKGTN 119 (199)
T ss_pred cCCCCeEEEEecccCCCC
Confidence 7 899999999864443
No 273
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.65 E-value=0.00017 Score=72.24 Aligned_cols=61 Identities=26% Similarity=0.365 Sum_probs=41.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc----C-CcEEEEEeccc----------------------CChHHHHHHHHHccCCeE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL----H-FDVYDLELSSV----------------------EGNKHLRKVLIATENKSI 280 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l----~-~~v~~l~l~~~----------------------~~~~~l~~l~~~~~~~sI 280 (419)
-++|.||+|+||||++..||..+ + ..+.-+..... .....+...+.......+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~Dl 218 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKHM 218 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCE
Confidence 38999999999999999999864 2 24444443332 122344555555567788
Q ss_pred EEEecCcc
Q 040638 281 LVVEDIDC 288 (419)
Q Consensus 281 lviddiD~ 288 (419)
++||....
T Consensus 219 VLIDTaG~ 226 (374)
T PRK14722 219 VLIDTIGM 226 (374)
T ss_pred EEEcCCCC
Confidence 88888863
No 274
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.64 E-value=8e-05 Score=79.34 Aligned_cols=136 Identities=21% Similarity=0.202 Sum_probs=74.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec-c--------cCChHHHHHHHHH-----ccCCeEEEEecCcccccccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS-S--------VEGNKHLRKVLIA-----TENKSILVVEDIDCCTELQD 294 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~-~--------~~~~~~l~~l~~~-----~~~~sIlviddiD~~~~~~~ 294 (419)
+||.|-||||||.|.+.+++.+...+|.---+ + +.+.. ..++... ...++|.+|||+|.+-. .+
T Consensus 322 ILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~-tge~~LeaGALVlAD~Gv~cIDEfdKm~~-~d 399 (682)
T COG1241 322 ILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKV-TGEWVLEAGALVLADGGVCCIDEFDKMNE-ED 399 (682)
T ss_pred EEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccC-CCeEEEeCCEEEEecCCEEEEEeccCCCh-HH
Confidence 89999999999999999999998877732111 1 11111 1111111 14588999999997632 01
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC-------------CCC
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD-------------RLD 361 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-------------~Ld 361 (419)
+.. ....+. +.|++-- --|+...-+..+-+++++|.+. .|+
T Consensus 400 r~a---------------ihEaME--------QQtIsIa---KAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~ 453 (682)
T COG1241 400 RVA---------------IHEAME--------QQTISIA---KAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLP 453 (682)
T ss_pred HHH---------------HHHHHH--------hcEeeec---ccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCC
Confidence 110 001110 1111100 0111111111233667778664 468
Q ss_pred ccccCCCCcceEEEeC-CCCHHHHHHHHHHhhCC
Q 040638 362 PALLRPGRMDVHIHMS-YCTLCGFKILASNYLGI 394 (419)
Q Consensus 362 pALlrpGR~d~~I~~~-~~~~~~~~~l~~~~l~~ 394 (419)
++|+. |||...-+. -|+.+.=+.++.+.+..
T Consensus 454 ~~lLS--RFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 454 APLLS--RFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hhHHh--hCCeeEEecCCCCccchHHHHHHHHHH
Confidence 89999 999987774 66666555555555543
No 275
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.63 E-value=0.00059 Score=69.34 Aligned_cols=126 Identities=17% Similarity=0.168 Sum_probs=77.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCc-EEEEEecccCChHHHHHHH---HHcc--CCeEEEEecCcccccccchhhhccC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFD-VYDLELSSVEGNKHLRKVL---IATE--NKSILVVEDIDCCTELQDRSAQART 301 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~-v~~l~l~~~~~~~~l~~l~---~~~~--~~sIlviddiD~~~~~~~~~~~~~~ 301 (419)
-++++||-+|||||+++.+...+.-. +|...+........+.+.+ .... .++.|++|||.+.-+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~---------- 108 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD---------- 108 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh----------
Confidence 68999999999999998888877554 3333333333333333322 2222 458999999997633
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCC-CccccCCCCcceEEEeCCCC
Q 040638 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRL-DPALLRPGRMDVHIHMSYCT 380 (419)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~L-dpALlrpGR~d~~I~~~~~~ 380 (419)
.... +-...|.. ...++|.++|..-.+ ..+-.=||| ...+++.+.+
T Consensus 109 ------------------------W~~~---lk~l~d~~-----~~~v~itgsss~ll~~~~~~~L~GR-~~~~~l~PlS 155 (398)
T COG1373 109 ------------------------WERA---LKYLYDRG-----NLDVLITGSSSSLLSKEISESLAGR-GKDLELYPLS 155 (398)
T ss_pred ------------------------HHHH---HHHHHccc-----cceEEEECCchhhhccchhhhcCCC-ceeEEECCCC
Confidence 0111 22233332 114555655544332 233334789 5889999999
Q ss_pred HHHHHH-------------HHHHhhCCCC
Q 040638 381 LCGFKI-------------LASNYLGITE 396 (419)
Q Consensus 381 ~~~~~~-------------l~~~~l~~~~ 396 (419)
+.++.. ++..|+...+
T Consensus 156 F~Efl~~~~~~~~~~~~~~~f~~Yl~~GG 184 (398)
T COG1373 156 FREFLKLKGEEIEPSKLELLFEKYLETGG 184 (398)
T ss_pred HHHHHhhcccccchhHHHHHHHHHHHhCC
Confidence 999954 6788887654
No 276
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=97.59 E-value=0.00082 Score=70.80 Aligned_cols=131 Identities=17% Similarity=0.208 Sum_probs=80.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC----------CcEEEEEecccCCh----------------------HHHHHHHH---
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH----------FDVYDLELSSVEGN----------------------KHLRKVLI--- 273 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~----------~~v~~l~l~~~~~~----------------------~~l~~l~~--- 273 (419)
+.+.|-||||||.++..+-+.|. +.+..++.-.+.+. +.|..-|.
T Consensus 425 mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k 504 (767)
T KOG1514|consen 425 MYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPK 504 (767)
T ss_pred EEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCC
Confidence 67889999999999999988773 44455544333221 22333333
Q ss_pred HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEe
Q 040638 274 ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFT 353 (419)
Q Consensus 274 ~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~t 353 (419)
....++|++|||+|.+... ...-|-|+.|-.... +...+||+-
T Consensus 505 ~~~~~~VvLiDElD~Lvtr------------------------------------~QdVlYn~fdWpt~~-~sKLvvi~I 547 (767)
T KOG1514|consen 505 PKRSTTVVLIDELDILVTR------------------------------------SQDVLYNIFDWPTLK-NSKLVVIAI 547 (767)
T ss_pred CCCCCEEEEeccHHHHhcc------------------------------------cHHHHHHHhcCCcCC-CCceEEEEe
Confidence 1235799999999988751 111256777766433 333455555
Q ss_pred cCCCCCCCccccC---CCCcc-eEEEeCCCCHHHHHHHHHHhhCCCCC
Q 040638 354 TNHKDRLDPALLR---PGRMD-VHIHMSYCTLCGFKILASNYLGITEH 397 (419)
Q Consensus 354 TN~~~~LdpALlr---pGR~d-~~I~~~~~~~~~~~~l~~~~l~~~~~ 397 (419)
.|+.+ |++.++- .-|++ ..|.|...+.++..+|+..-|...++
T Consensus 548 aNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~ 594 (767)
T KOG1514|consen 548 ANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDA 594 (767)
T ss_pred ccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhh
Confidence 55543 3333331 01333 34677888999999999998887643
No 277
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.59 E-value=0.00082 Score=67.84 Aligned_cols=175 Identities=13% Similarity=0.039 Sum_probs=108.1
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecccCC
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSVEG 264 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~~~ 264 (419)
.-+++.|-+.-...+.+.+..++..+ -...+.+.|-||||||.+..-+-..+ ......+++.++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~---------t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~ 218 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELN---------TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTE 218 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcc---------cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccc
Confidence 34567777666666666665555433 24458889999999999887555444 23557788887632
Q ss_pred hHH---------------------HHHHHHH----ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHH
Q 040638 265 NKH---------------------LRKVLIA----TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRN 319 (419)
Q Consensus 265 ~~~---------------------l~~l~~~----~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (419)
... ..+.|.. ...+-++|+||+|.+....+
T Consensus 219 ~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~------------------------- 273 (529)
T KOG2227|consen 219 ASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQ------------------------- 273 (529)
T ss_pred hHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhccc-------------------------
Confidence 211 1112211 12357889999998873111
Q ss_pred HHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCcccc----CCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 320 LILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALL----RPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 320 ~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALl----rpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.+ |..++....-.+..+++|+-+|..+.=|..|- +-+.-...+.|+..+.++..+|++.-+...
T Consensus 274 --------~v----Ly~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 274 --------TV----LYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred --------ce----eeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 11 11112222224456788889998887776554 345566779999999999999999999875
Q ss_pred CCC-Ch-HHHHHHHhcC
Q 040638 396 EHP-LF-SEVEELIEQT 410 (419)
Q Consensus 396 ~~~-l~-~~i~~l~~~~ 410 (419)
... .. ..|+-++.++
T Consensus 342 ~t~~~~~~Aie~~ArKv 358 (529)
T KOG2227|consen 342 STSIFLNAAIELCARKV 358 (529)
T ss_pred cccccchHHHHHHHHHh
Confidence 422 22 2455444443
No 278
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.59 E-value=0.00021 Score=80.10 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=89.6
Q ss_pred ccccCceEEeCCCCCcHHH-HHHHHHHHcCCcEEEEEecccCChH-HHHHHHHHcc----------------CCeEEEEe
Q 040638 223 KAWKRGYLLFGPLGTGKSS-LIAAMANYLHFDVYDLELSSVEGNK-HLRKVLIATE----------------NKSILVVE 284 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTs-L~~aiA~~l~~~v~~l~l~~~~~~~-~l~~l~~~~~----------------~~sIlvid 284 (419)
+.-.|||+++||||+|||+ ++.++-+.+-+++..++.+...... .|+-+=..+. ..-|++.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 4557999999999999999 5778889999999999988775444 4443322221 12588999
Q ss_pred cCcccccc-cchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCC------CCEEEEEecCCC
Q 040638 285 DIDCCTEL-QDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSG------DERIIVFTTNHK 357 (419)
Q Consensus 285 diD~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g------~~~iiV~tTN~~ 357 (419)
||. ++. .+.... ..+....=+-.-.|+|+... .+.++++++|.+
T Consensus 1571 eIn--Lp~~~~y~~~---------------------------~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~ 1621 (3164)
T COG5245 1571 EIN--LPYGFEYYPP---------------------------TVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPG 1621 (3164)
T ss_pred ccC--CccccccCCC---------------------------ceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCC
Confidence 998 321 111000 01111111122345665411 237788899987
Q ss_pred CCCC-----ccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 358 DRLD-----PALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 358 ~~Ld-----pALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
...- ..++| | ...|++.||.-.....|...+|..
T Consensus 1622 td~gRv~~~eRf~r--~-~v~vf~~ype~~SL~~Iyea~l~~ 1660 (3164)
T COG5245 1622 TDEGRVKYYERFIR--K-PVFVFCCYPELASLRNIYEAVLMG 1660 (3164)
T ss_pred CCcccCccHHHHhc--C-ceEEEecCcchhhHHHHHHHHHHH
Confidence 6532 44554 2 567899999999999999988865
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.59 E-value=0.00046 Score=60.26 Aligned_cols=23 Identities=30% Similarity=0.534 Sum_probs=21.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-+.+.||||+||||++.-+|+.|
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 38899999999999999999888
No 280
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.58 E-value=0.00021 Score=63.89 Aligned_cols=38 Identities=32% Similarity=0.517 Sum_probs=29.4
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
++.+.+....| +.|.||+|+|||||+++||+.+...-+
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G 55 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG 55 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 44455555666 889999999999999999998754433
No 281
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.57 E-value=9.8e-05 Score=67.43 Aligned_cols=113 Identities=16% Similarity=0.202 Sum_probs=57.5
Q ss_pred eEEeCCCCCcHHHHHHHH-HHH-c--CCcEEEEEecccC-----C---------------------hHHHHHHHHHccCC
Q 040638 229 YLLFGPLGTGKSSLIAAM-ANY-L--HFDVYDLELSSVE-----G---------------------NKHLRKVLIATENK 278 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~ai-A~~-l--~~~v~~l~l~~~~-----~---------------------~~~l~~l~~~~~~~ 278 (419)
++++|.||+|||+.+-.. ... + +..++. ++..+. . ...+... ......
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW-RKLPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH-TTSGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh-cccCCC
Confidence 688999999999987655 322 2 555554 444221 0 0111111 122368
Q ss_pred eEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC
Q 040638 279 SILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD 358 (419)
Q Consensus 279 sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~ 358 (419)
+||||||+...++.+...... ....++++.. ....+.-||++|-++.
T Consensus 81 ~liviDEa~~~~~~r~~~~~~------------------------------~~~~~~~l~~---hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKGKK------------------------------VPEIIEFLAQ---HRHYGWDIILITQSPS 127 (193)
T ss_dssp -EEEETTGGGTSB---T-T----------------------------------HHHHGGGG---CCCTT-EEEEEES-GG
T ss_pred cEEEEECChhhcCCCcccccc------------------------------chHHHHHHHH---hCcCCcEEEEEeCCHH
Confidence 999999999887733321100 0011222211 1223467889999999
Q ss_pred CCCccccCCCCcceEEEeCC
Q 040638 359 RLDPALLRPGRMDVHIHMSY 378 (419)
Q Consensus 359 ~LdpALlrpGR~d~~I~~~~ 378 (419)
.||+.+++ +.+.++++--
T Consensus 128 ~id~~ir~--lve~~~~~~k 145 (193)
T PF05707_consen 128 QIDKFIRD--LVEYHYHCRK 145 (193)
T ss_dssp GB-HHHHC--CEEEEEEEEE
T ss_pred HHhHHHHH--HHheEEEEEe
Confidence 99999987 8888887754
No 282
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.57 E-value=0.00048 Score=66.84 Aligned_cols=155 Identities=21% Similarity=0.236 Sum_probs=95.8
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHH---HcCCcEEEEEeccc-CC-h--
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN---YLHFDVYDLELSSV-EG-N-- 265 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~---~l~~~v~~l~l~~~-~~-~-- 265 (419)
.+.|..+-.+.+.+.+.+..-..+ ...+++.||-|+|||.++...-. +.+-+++.+.++.. .. .
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gE---------snsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGE---------SNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcC---------CCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 345556666666666655543332 45699999999999998875533 56777777766543 11 1
Q ss_pred -----------------------HHHHHHHHHc-------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 266 -----------------------KHLRKVLIAT-------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 266 -----------------------~~l~~l~~~~-------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
..+..++... ..+.|.++||||...+-
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h----------------------- 152 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH----------------------- 152 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-----------------------
Confidence 1122222111 12456678899977641
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCcceE-EEeC-CCCHHHHHHHHHH
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRMDVH-IHMS-YCTLCGFKILASN 390 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~d~~-I~~~-~~~~~~~~~l~~~ 390 (419)
...++ |-|..|--.++. ..+.||+.|.+- |.|...+.. ||... |+|+ ....++.+.++++
T Consensus 153 ----------~rQtl--lYnlfDisqs~r-~Piciig~Ttrld~lE~LEKRVKS--RFshr~I~m~~~~~l~~yv~l~r~ 217 (408)
T KOG2228|consen 153 ----------SRQTL--LYNLFDISQSAR-APICIIGVTTRLDILELLEKRVKS--RFSHRVIFMLPSLPLGDYVDLYRK 217 (408)
T ss_pred ----------hhhHH--HHHHHHHHhhcC-CCeEEEEeeccccHHHHHHHHHHh--hcccceeeccCCCChHHHHHHHHH
Confidence 12233 667777776543 345666666554 445577777 88776 6664 4578999999999
Q ss_pred hhCC
Q 040638 391 YLGI 394 (419)
Q Consensus 391 ~l~~ 394 (419)
.|..
T Consensus 218 ll~v 221 (408)
T KOG2228|consen 218 LLSV 221 (408)
T ss_pred HhcC
Confidence 9954
No 283
>PRK03839 putative kinase; Provisional
Probab=97.57 E-value=6.2e-05 Score=67.71 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=27.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
++|.|+||+||||+++.+|+.+++++++++
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 789999999999999999999999887653
No 284
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.56 E-value=5.8e-05 Score=64.84 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+++.|||||||||+++.++..++.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC
Confidence 689999999999999999999983
No 285
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.56 E-value=0.00043 Score=66.17 Aligned_cols=90 Identities=16% Similarity=0.234 Sum_probs=59.4
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEE----------EEEec
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVY----------DLELS 260 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~----------~l~l~ 260 (419)
.|.|+.-+++.|+..+..+...+. +++. +-|||++||||+..++.||+.+-.... ...+.
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP 154 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFP 154 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCC
Confidence 478999999999999999887653 2233 569999999999999999998732211 11111
Q ss_pred ccCC----hHHHHHHHHH---ccCCeEEEEecCcccc
Q 040638 261 SVEG----NKHLRKVLIA---TENKSILVVEDIDCCT 290 (419)
Q Consensus 261 ~~~~----~~~l~~l~~~---~~~~sIlviddiD~~~ 290 (419)
.-.. ..+|+..+.. .-+++|+++||.|.+-
T Consensus 155 ~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp 191 (344)
T KOG2170|consen 155 HASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLP 191 (344)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcC
Confidence 1000 1223333322 2358999999999763
No 286
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.55 E-value=0.00063 Score=68.10 Aligned_cols=29 Identities=28% Similarity=0.445 Sum_probs=24.4
Q ss_pred cccCc--eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 224 AWKRG--YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
|..+| .+++||||||||||++.|++.+..
T Consensus 165 PIGkGQR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 165 PIGKGQRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ccccCceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 44555 899999999999999999997743
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.55 E-value=0.00022 Score=64.26 Aligned_cols=43 Identities=26% Similarity=0.402 Sum_probs=32.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 14 ~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~ 58 (180)
T cd03214 14 VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58 (180)
T ss_pred eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 344555555666 8899999999999999999988665554433
No 288
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.55 E-value=7.6e-05 Score=64.95 Aligned_cols=30 Identities=30% Similarity=0.520 Sum_probs=27.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
++|+||||+||||+++.+|..+++.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999988654
No 289
>PRK13949 shikimate kinase; Provisional
Probab=97.52 E-value=7.7e-05 Score=66.66 Aligned_cols=31 Identities=35% Similarity=0.548 Sum_probs=28.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.++|.||||+||||+++.+|+.+++++++++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 4899999999999999999999999988765
No 290
>PRK00625 shikimate kinase; Provisional
Probab=97.50 E-value=8.8e-05 Score=66.55 Aligned_cols=30 Identities=30% Similarity=0.511 Sum_probs=28.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
++|.|+||+||||+++.+|..+++++++++
T Consensus 3 I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 3 IFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 789999999999999999999999998775
No 291
>PRK13947 shikimate kinase; Provisional
Probab=97.50 E-value=9.3e-05 Score=65.81 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=29.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++|.|||||||||+++.+|..+++++++.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~ 34 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK 34 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence 38899999999999999999999999987653
No 292
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.48 E-value=0.00077 Score=62.50 Aligned_cols=38 Identities=24% Similarity=0.297 Sum_probs=28.6
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
|++..+-++++||||||||+++..+|..+ +.++..++.
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~ 55 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDT 55 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 44545559999999999999999998765 455655544
No 293
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.47 E-value=0.00078 Score=65.29 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc----C-CcEEEEEecc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL----H-FDVYDLELSS 261 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l----~-~~v~~l~l~~ 261 (419)
-++|.||+|+||||++..+|.++ + ..+.-+.+..
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 48899999999999999999876 3 5666666654
No 294
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.47 E-value=0.00023 Score=64.04 Aligned_cols=32 Identities=19% Similarity=0.239 Sum_probs=25.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHH
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~ 248 (419)
.++.+.+..++| +.|.||+|+|||||+++++.
T Consensus 10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 345556666666 88999999999999999963
No 295
>PRK07261 topology modulation protein; Provisional
Probab=97.47 E-value=0.0001 Score=65.98 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=26.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
+++.||||+|||||++.++..++.+++.++
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~~i~~D 32 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCPVLHLD 32 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCeEecC
Confidence 789999999999999999999988776554
No 296
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.46 E-value=3.1e-05 Score=76.59 Aligned_cols=45 Identities=24% Similarity=0.414 Sum_probs=35.5
Q ss_pred hhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 216 DYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 216 ~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
...+.+.+..+.| +.|.||+||||||+.++||+.-..+-+.+.+.
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~ 65 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 3445566777888 67999999999999999999987776665553
No 297
>PHA02774 E1; Provisional
Probab=97.46 E-value=0.00015 Score=75.53 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=41.1
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEE-EEecccCChHHHHHHHHHccCCeEEEEecC
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYD-LELSSVEGNKHLRKVLIATENKSILVVEDI 286 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~-l~l~~~~~~~~l~~l~~~~~~~sIlviddi 286 (419)
.+-++.++||||||||||+++.+|++.++..++. ++.. + .-.+......-|+++||+
T Consensus 431 ~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~---s----~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 431 IPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSK---S----HFWLQPLADAKIALLDDA 488 (613)
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECc---c----ccccchhccCCEEEEecC
Confidence 4445679999999999999999999999866644 4321 1 112334445569999999
No 298
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.45 E-value=0.00011 Score=68.60 Aligned_cols=60 Identities=23% Similarity=0.169 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 201 KKMIMDDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 201 k~~i~~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
+.-.++.+...+..+..++.+.+....| +.|.||+|+|||||++++++.+..+-..+.+.
T Consensus 21 ~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 82 (224)
T cd03220 21 KKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82 (224)
T ss_pred hhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 3455666766666777888888888887 88999999999999999999887766666543
No 299
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.45 E-value=0.00057 Score=67.29 Aligned_cols=65 Identities=25% Similarity=0.422 Sum_probs=48.5
Q ss_pred cc-ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-CCcEEEEEeccc
Q 040638 191 FD-TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFDVYDLELSSV 262 (419)
Q Consensus 191 f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~~l~l~~~ 262 (419)
|+ ++.|.++..+++++.+.....+-+ .-++-++|.||+|+||||+++.+.+.+ .+.+|.+..+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~AA~g~~-------~~krIl~L~GPvg~GKSsl~~~Lk~~le~y~~Y~l~~~Pm 125 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSAAQGLE-------ERKRILLLLGPVGGGKSSLAELLKRGLEEYPIYTLKGCPM 125 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHHHhccC-------ccceEEEEECCCCCCHHHHHHHHHHHhheEEEEEecCCcc
Confidence 55 789999999999886655443222 235568899999999999999999888 467777755444
No 300
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.44 E-value=0.00027 Score=62.22 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=50.5
Q ss_pred chhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc----CChHHHHHHHHHccCCeEEEEecC
Q 040638 214 RKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----EGNKHLRKVLIATENKSILVVEDI 286 (419)
Q Consensus 214 ~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----~~~~~l~~l~~~~~~~sIlviddi 286 (419)
.......+++...+| +++.||+|||||+|.+++|+....+.+.+....- -+...+|.-..-..+.+-+|=|-+
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 344556666677777 8999999999999999999999888776655332 145566665555555444554433
No 301
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00085 Score=62.59 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
-..++||+|+|||||++.++++...
T Consensus 59 ~W~I~G~NGsGKTTLL~ll~~~~~p 83 (257)
T COG1119 59 HWAIVGPNGAGKTTLLSLLTGEHPP 83 (257)
T ss_pred cEEEECCCCCCHHHHHHHHhcccCC
Confidence 3889999999999999999988743
No 302
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.44 E-value=0.00048 Score=73.61 Aligned_cols=44 Identities=27% Similarity=0.401 Sum_probs=34.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+++..++| +.+.||+|+|||||++.+++.+ ..-+.+.+..
T Consensus 365 vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g 410 (588)
T PRK11174 365 LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKING 410 (588)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECC
Confidence 456666676777 9999999999999999999998 5555555443
No 303
>PF14516 AAA_35: AAA-like domain
Probab=97.42 E-value=0.0019 Score=64.08 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=28.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV 262 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~ 262 (419)
-+.++||..+|||||...+.+.+ ++....+++..+
T Consensus 33 ~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 33 YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 37899999999999999988766 677777777665
No 304
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.42 E-value=0.00011 Score=68.35 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=19.7
Q ss_pred CceEEeCCCCCcHHHHHHHHHH
Q 040638 227 RGYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~ 248 (419)
.-+|+||+||+||||+++.+++
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCC
Confidence 3499999999999999999975
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.42 E-value=0.00062 Score=62.34 Aligned_cols=34 Identities=41% Similarity=0.543 Sum_probs=25.3
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
+-.++.||||||||+++++++..+ +..+..+..+
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT 55 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPT 55 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 447889999999999999988766 5566666553
No 306
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00011 Score=74.46 Aligned_cols=48 Identities=27% Similarity=0.376 Sum_probs=39.3
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
...|.|+.|++..|+.+.-.. .-..++|++||||||||++++-|...|
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAA---------------AGgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAA---------------AGGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHH---------------hcCCcEEEecCCCCchHHhhhhhcccC
Confidence 347999999999999885432 224579999999999999999998777
No 307
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=97.41 E-value=0.00031 Score=75.13 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=41.3
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+|..|++++|.++.++.+...+.. ++.++|+||||||||++++++|..+..
T Consensus 26 ~~~~~~~vigq~~a~~~L~~~~~~---------------~~~~l~~G~~G~GKttla~~l~~~l~~ 76 (637)
T PRK13765 26 PERLIDQVIGQEHAVEVIKKAAKQ---------------RRHVMMIGSPGTGKSMLAKAMAELLPK 76 (637)
T ss_pred CcccHHHcCChHHHHHHHHHHHHh---------------CCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence 477999999998888876543321 236999999999999999999998863
No 308
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.40 E-value=0.00069 Score=63.17 Aligned_cols=39 Identities=21% Similarity=0.275 Sum_probs=29.9
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
|++...-++++||||+|||+++..+|... +..+..++..
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 45545558999999999999999998654 5666666665
No 309
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.39 E-value=0.00081 Score=60.97 Aligned_cols=42 Identities=29% Similarity=0.370 Sum_probs=31.6
Q ss_pred hhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 219 RRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 219 ~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
+.+.+...+| +-|.||+|+||||+.+.||..|..+-+.+...
T Consensus 19 rdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~id 62 (245)
T COG4555 19 RDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID 62 (245)
T ss_pred hheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEe
Confidence 3444555666 77999999999999999999997665544443
No 310
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.39 E-value=0.0006 Score=72.92 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=34.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..++| +.+.||+|+|||||++.+++.+...-+.+.+.
T Consensus 350 iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~ 395 (588)
T PRK13657 350 GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILID 395 (588)
T ss_pred eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 455566666666 99999999999999999999987665555443
No 311
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00015 Score=65.16 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=24.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+++.||||+||||+++.+|..+++..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999999876544
No 312
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.38 E-value=0.00051 Score=65.97 Aligned_cols=88 Identities=16% Similarity=0.335 Sum_probs=56.1
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEe------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD---VYDLEL------ 259 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l------ 259 (419)
.++++++..+...+.+.+.+..... .+..+++.||+|+||||+++++..++..+ ++.++-
T Consensus 101 ~sle~l~~~~~~~~~~~~~l~~~v~-----------~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 101 FSLEDLGESGSIPEEIAEFLRSAVR-----------GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp -CHCCCCHTHHCHHHHHHHHHHCHH-----------TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred ccHhhccCchhhHHHHHHHHhhccc-----------cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 3888998777666666555544332 24459999999999999999999988544 333321
Q ss_pred ccc--------CChHHHHHHHHHc--cCCeEEEEecCc
Q 040638 260 SSV--------EGNKHLRKVLIAT--ENKSILVVEDID 287 (419)
Q Consensus 260 ~~~--------~~~~~l~~l~~~~--~~~sIlviddiD 287 (419)
... .....+.+++..+ ..|.+|++.||-
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 100 1233455565544 568999999996
No 313
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.38 E-value=0.00086 Score=62.40 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=23.4
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
|++...-+.|+||||+|||+|+..+|...
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHh
Confidence 45555558999999999999999988653
No 314
>PRK06217 hypothetical protein; Validated
Probab=97.37 E-value=0.00017 Score=65.20 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=27.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
++|.|+||+||||+++++|..++.++++++
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 889999999999999999999998877654
No 315
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.00013 Score=71.92 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=36.1
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+.+.+....| +.|.||+||||||+.+.||+....+-+++.+..
T Consensus 19 l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g 64 (338)
T COG3839 19 LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDG 64 (338)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 44456667777 889999999999999999999988877776654
No 316
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.37 E-value=0.00016 Score=62.81 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=24.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
++|.||||+||||+++.++..++..+++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998765543
No 317
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.36 E-value=0.00016 Score=63.87 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=23.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
++|.|||||||||+++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 578999999999999999999975543
No 318
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.35 E-value=5.1e-05 Score=69.38 Aligned_cols=52 Identities=19% Similarity=0.415 Sum_probs=40.9
Q ss_pred HHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 210 RFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 210 ~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
..+...+.++.+.+...+| +.+.||+|+|||||++||...-..+-+.+.+..
T Consensus 10 K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g 63 (240)
T COG1126 10 KSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDG 63 (240)
T ss_pred EEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECC
Confidence 3445556677777777888 889999999999999999887777777766654
No 319
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.35 E-value=0.00014 Score=65.08 Aligned_cols=37 Identities=32% Similarity=0.459 Sum_probs=26.3
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEeccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFD---VYDLELSSV 262 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l~~~ 262 (419)
++.++|+||+|+|||+++++++..+... ++.+++...
T Consensus 24 ~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp ---EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 4679999999999999999998877444 677777655
No 320
>PRK14532 adenylate kinase; Provisional
Probab=97.35 E-value=0.00017 Score=65.25 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..+++..++.
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 78999999999999999999998776543
No 321
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.34 E-value=0.00018 Score=69.16 Aligned_cols=56 Identities=14% Similarity=0.267 Sum_probs=44.0
Q ss_pred HHHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 205 MDDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 205 ~~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++++...+.....++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~ 84 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 345555566666788888888888 88999999999999999999987766655543
No 322
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=97.33 E-value=0.00098 Score=70.31 Aligned_cols=45 Identities=24% Similarity=0.362 Sum_probs=36.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+++..++| +.+.||+|+|||||++.+++.+..+-+.+.+..
T Consensus 350 vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 455666666677 999999999999999999999987766665544
No 323
>PRK14531 adenylate kinase; Provisional
Probab=97.33 E-value=0.00021 Score=64.56 Aligned_cols=30 Identities=23% Similarity=0.406 Sum_probs=26.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+-++++||||+||||+++.+|..+++..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 348999999999999999999999887654
No 324
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.33 E-value=0.00051 Score=64.55 Aligned_cols=38 Identities=29% Similarity=0.281 Sum_probs=28.0
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
|++....++++||||||||+++..++... +..+..+.+
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 55556669999999999999999996542 445554444
No 325
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.33 E-value=0.00075 Score=61.94 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=39.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHH-c----CCcE--------------EEEEecc-c--------CChHHHHHHHHHccCC
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANY-L----HFDV--------------YDLELSS-V--------EGNKHLRKVLIATENK 278 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~-l----~~~v--------------~~l~l~~-~--------~~~~~l~~l~~~~~~~ 278 (419)
+-++|.||+|+||||++++|+.. + +..+ ..+.... + ..-..+..++.....|
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~ 109 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLATPR 109 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhccCC
Confidence 34899999999999999999932 2 2111 1111110 0 0112334445556789
Q ss_pred eEEEEecCccccc
Q 040638 279 SILVVEDIDCCTE 291 (419)
Q Consensus 279 sIlviddiD~~~~ 291 (419)
.++++||.-..++
T Consensus 110 ~llllDEp~~gld 122 (202)
T cd03243 110 SLVLIDELGRGTS 122 (202)
T ss_pred eEEEEecCCCCCC
Confidence 9999999976554
No 326
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.33 E-value=0.001 Score=72.76 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=36.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+++..++| +.+.||+|+|||||++.|++.+...-+.+.+...
T Consensus 494 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 541 (710)
T TIGR03796 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGI 541 (710)
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 455666666777 9999999999999999999999777666655443
No 327
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.31 E-value=0.00015 Score=67.18 Aligned_cols=45 Identities=20% Similarity=0.372 Sum_probs=36.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 65 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDG 65 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECC
Confidence 455556666666 889999999999999999999987777776643
No 328
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.31 E-value=0.00022 Score=63.87 Aligned_cols=32 Identities=38% Similarity=0.756 Sum_probs=28.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
+.++|.||+|+||||+++.+|+.+++++++.+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 45899999999999999999999999887765
No 329
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.31 E-value=0.00018 Score=63.96 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=30.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+.+.|.|++|+||||+-+++|..|+++++|.+-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~ 35 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ 35 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence 358899999999999999999999999998753
No 330
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.31 E-value=0.0027 Score=65.00 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=64.0
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~~ 266 (419)
.+..++|....-+++.+.+...... .-.+|++|++||||-.+|++|..... .+++.++|..+..+-
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s-----------~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPS-----------DASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCC-----------CCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4556777766667776666554322 34599999999999999999998874 589999999985433
Q ss_pred HHHHHHHHc-----------------cCCeEEEEecCccc
Q 040638 267 HLRKVLIAT-----------------ENKSILVVEDIDCC 289 (419)
Q Consensus 267 ~l~~l~~~~-----------------~~~sIlviddiD~~ 289 (419)
-=.++|... ...+.||+|||..+
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m 247 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM 247 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC
Confidence 333455422 24689999999865
No 331
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.30 E-value=0.001 Score=62.30 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=22.3
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~ 249 (419)
|++...-+.|+||||||||+++..+|..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444899999999999999999754
No 332
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.30 E-value=0.001 Score=70.11 Aligned_cols=45 Identities=24% Similarity=0.380 Sum_probs=35.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.+.||+|+|||||++.+++....+-+.+.+..
T Consensus 337 il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g 383 (529)
T TIGR02857 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNG 383 (529)
T ss_pred cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 455566666667 999999999999999999999987766665544
No 333
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.30 E-value=0.00061 Score=72.87 Aligned_cols=50 Identities=32% Similarity=0.398 Sum_probs=39.7
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
.-|++++|.++.++.+...+.. ++.++|+||||||||++++++|+.++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~---------------~~~~ll~G~pG~GKT~la~~la~~l~~~ 64 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQ---------------KRNVLLIGEPGVGKSMLAKAMAELLPDE 64 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHc---------------CCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence 3678899988888766544421 2478999999999999999999999755
No 334
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.30 E-value=0.00022 Score=61.37 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=27.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
+.+.|+|||||||+++.+|..++.++++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999999999988776
No 335
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.30 E-value=0.00092 Score=71.54 Aligned_cols=45 Identities=20% Similarity=0.339 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.+.||+|+|||||++.+++.+...-+.+.+..
T Consensus 356 il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 356 VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 355566666667 999999999999999999999977666555543
No 336
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.29 E-value=0.0014 Score=65.42 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
.++.||||||||||++.+|+.+..
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~ 159 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAA 159 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 799999999999999999998743
No 337
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.29 E-value=6.2e-05 Score=69.15 Aligned_cols=45 Identities=24% Similarity=0.443 Sum_probs=35.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 59 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 455566666666 889999999999999999999887767665543
No 338
>PRK13948 shikimate kinase; Provisional
Probab=97.29 E-value=0.00027 Score=63.90 Aligned_cols=34 Identities=26% Similarity=0.220 Sum_probs=30.8
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.++.++|.|++||||||+.+.+|..++.++++.+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3466999999999999999999999999998776
No 339
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.28 E-value=0.0006 Score=61.60 Aligned_cols=67 Identities=27% Similarity=0.421 Sum_probs=50.7
Q ss_pred HHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----ChHHHHHHH
Q 040638 206 DDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE----GNKHLRKVL 272 (419)
Q Consensus 206 ~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~----~~~~l~~l~ 272 (419)
+.+...+..+.....+....+.| .-|.||+|.|||||...|++.++.+-+.+...... ....|.+.+
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~l 77 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKL 77 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHH
Confidence 44566666777777777777776 67999999999999999999999988777665542 345565544
No 340
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.27 E-value=0.00024 Score=64.39 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=25.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..+++..+.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 78999999999999999999988776543
No 341
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.26 E-value=0.0014 Score=62.26 Aligned_cols=58 Identities=22% Similarity=0.316 Sum_probs=37.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEecccCChHHHHHHHHHccCCeEEEEecCcc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFD---VYDLELSSVEGNKHLRKVLIATENKSILVVEDIDC 288 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~ 288 (419)
+++.||+|||||||++.+++.+... ++.+-+-.-+....+.+++... .+++|..+.|.
T Consensus 19 ~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I--~~~~v~~~~~~ 79 (249)
T cd01128 19 GLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV--KGEVIASTFDE 79 (249)
T ss_pred EEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--ccEEEEecCCC
Confidence 8999999999999999999988653 2211110111113455555444 56777777774
No 342
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.25 E-value=0.0001 Score=69.62 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 17 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (243)
T TIGR02315 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEG 63 (243)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECC
Confidence 455556666666 889999999999999999999877666665543
No 343
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.25 E-value=0.00071 Score=64.11 Aligned_cols=42 Identities=24% Similarity=0.207 Sum_probs=33.7
Q ss_pred hcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 220 RVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 220 ~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+++..++| +-|.|.+||||||+.+++.+.....-+.+....
T Consensus 31 ~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g 74 (268)
T COG4608 31 GVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG 74 (268)
T ss_pred ceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC
Confidence 344555666 789999999999999999999988777666653
No 344
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.25 E-value=0.0013 Score=71.33 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=34.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
..+.+.+..+.| +.+.|++|||||||++.+++.+...-+.+.++.+
T Consensus 488 vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~ 535 (709)
T COG2274 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGV 535 (709)
T ss_pred hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 344455666777 9999999999999999999998765555544443
No 345
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.25 E-value=0.0006 Score=60.96 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=28.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
+++.||||+|||+++..++..++.+++.+.....
T Consensus 4 ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~ 37 (170)
T PRK05800 4 ILVTGGARSGKSRFAERLAAQSGLQVLYIATAQP 37 (170)
T ss_pred EEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCC
Confidence 7899999999999999999998877776665444
No 346
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=97.25 E-value=0.00063 Score=70.81 Aligned_cols=170 Identities=18% Similarity=0.230 Sum_probs=93.6
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc---eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc------
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG---YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS------ 261 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG---~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~------ 261 (419)
|-.+.|.+.+|..|+- ..+++-..+..-|. .-|| +++.|.||||||-+.++.++.+...+|.---.+
T Consensus 344 ~PsIyGhe~VK~GilL---~LfGGv~K~a~eg~-~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILL---SLFGGVHKSAGEGT-SLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHH---HHhCCccccCCCCc-cccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccce
Confidence 5566777777777743 33333333333222 2345 999999999999999999999988888432111
Q ss_pred ---cCChHHHHHHHHHc-----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 262 ---VEGNKHLRKVLIAT-----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 262 ---~~~~~~l~~l~~~~-----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+.++ .-.+...++ ...+|-.|||+|.+-. .+... ...+++ +.+.|
T Consensus 420 aaVvkD~-esgdf~iEAGALmLADnGICCIDEFDKMd~-~dqvA---------------ihEAME--------QQtIS-- 472 (764)
T KOG0480|consen 420 AAVVKDE-ESGDFTIEAGALMLADNGICCIDEFDKMDV-KDQVA---------------IHEAME--------QQTIS-- 472 (764)
T ss_pred EEEEecC-CCCceeeecCcEEEccCceEEechhcccCh-HhHHH---------------HHHHHH--------hheeh--
Confidence 1111 001111111 3467888999997632 11110 000010 00110
Q ss_pred HHHhcCcccCCCCCEEEEEecCCCC-------------CCCccccCCCCcceE-EEeCCCCHHHHHHHHHHhhCC
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNHKD-------------RLDPALLRPGRMDVH-IHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~~~-------------~LdpALlrpGR~d~~-I~~~~~~~~~~~~l~~~~l~~ 394 (419)
-.--|+..+-....-|++++|+.. +++++|++ |||.. |-+..|++..=..|+++.+..
T Consensus 473 -IaKAGv~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApimS--RFDL~FiLlD~~nE~~D~~ia~hIld~ 544 (764)
T KOG0480|consen 473 -IAKAGVVATLNARTSILAAANPVGGHYDRKKTLRENINMSAPIMS--RFDLFFILLDDCNEVVDYAIARHILDL 544 (764)
T ss_pred -heecceEEeecchhhhhhhcCCcCCccccccchhhhcCCCchhhh--hhcEEEEEecCCchHHHHHHHHHHHHH
Confidence 000111111111223667777552 46889999 99975 456889888877777777764
No 347
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.25 E-value=7.8e-05 Score=69.31 Aligned_cols=45 Identities=24% Similarity=0.274 Sum_probs=36.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
..+.+.+...+| +-|.||+|||||||++++|+......+.+.+..
T Consensus 22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 445556666667 779999999999999999999988888777755
No 348
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.25 E-value=0.00021 Score=64.85 Aligned_cols=45 Identities=24% Similarity=0.349 Sum_probs=35.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 53 (190)
T TIGR01166 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDG 53 (190)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECC
Confidence 455566666666 889999999999999999999887777666543
No 349
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0055 Score=61.58 Aligned_cols=34 Identities=29% Similarity=0.362 Sum_probs=27.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
+-++|.||+|+||||++..||..+ +..+.-+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 458999999999999999999877 3455555543
No 350
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.24 E-value=0.0012 Score=72.11 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+++..++| +.+.||+|+|||||++.+++....+-+.+.+..
T Consensus 472 il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 455566666666 999999999999999999999877666655544
No 351
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.24 E-value=0.00027 Score=60.80 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.8
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
..+|+.|-|||||||++..+|..+++..+.+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 4599999999999999999999999887754
No 352
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.23 E-value=0.0012 Score=72.18 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=34.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+++..++| +.+.||+|+|||||++.+++.+...-+.+.+.
T Consensus 480 vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 480 ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 455666666667 99999999999999999999987665555443
No 353
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.23 E-value=0.0003 Score=63.28 Aligned_cols=28 Identities=18% Similarity=0.288 Sum_probs=24.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
-+++.||||+||||+++.+|..+++...
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 3789999999999999999999876654
No 354
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.22 E-value=0.0014 Score=71.53 Aligned_cols=45 Identities=20% Similarity=0.311 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+++..++| +.+.||+|+|||||++.+++.+...-+.+.+..
T Consensus 468 vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 514 (686)
T TIGR03797 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDG 514 (686)
T ss_pred ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 455566666666 999999999999999999999977666655543
No 355
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.22 E-value=0.00013 Score=62.33 Aligned_cols=40 Identities=33% Similarity=0.455 Sum_probs=32.1
Q ss_pred ccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 223 KAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 223 ~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
+..+.| +.+.||+|+|||||+++|++.....-..+.+...
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~ 47 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGK 47 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTE
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccccccccccccccc
Confidence 334445 8999999999999999999999887777766543
No 356
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.22 E-value=8.5e-05 Score=68.53 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=35.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 16 il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (211)
T cd03225 16 ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDG 62 (211)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 455666666666 889999999999999999999877766665543
No 357
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.22 E-value=0.00054 Score=67.29 Aligned_cols=57 Identities=26% Similarity=0.275 Sum_probs=39.9
Q ss_pred chhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 197 VTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 197 ~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.++.++.+.+.+...+.... -...+..+.|.|+|||||||+++.+|..+++++++++
T Consensus 109 ~~~~~~~~~~~l~~~~~~~~-----~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 109 SPAQLARVRDALSGMLGAGR-----RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred CHHHHHHHHHHHHHHHhhhh-----hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34555555555544433221 1233455999999999999999999999999999654
No 358
>PF13245 AAA_19: Part of AAA domain
Probab=97.22 E-value=0.00081 Score=51.76 Aligned_cols=22 Identities=45% Similarity=0.828 Sum_probs=16.7
Q ss_pred eEEeCCCCCcHH-HHHHHHHHHc
Q 040638 229 YLLFGPLGTGKS-SLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKT-sL~~aiA~~l 250 (419)
+++.|||||||| ++++.++..+
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 556999999999 5666666655
No 359
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.22 E-value=0.0012 Score=59.39 Aligned_cols=49 Identities=22% Similarity=0.284 Sum_probs=39.6
Q ss_pred chhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 214 RKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 214 ~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
+++..+.+.+..++| +.|.||+|+||||+++.|..+...+-+.+.+...
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~ 64 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGH 64 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCe
Confidence 345666777777888 7889999999999999999999888777766544
No 360
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.21 E-value=0.00023 Score=65.66 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=35.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+....| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 15 ~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (210)
T cd03269 15 ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61 (210)
T ss_pred EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 445556666666 889999999999999999999887777776643
No 361
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.20 E-value=0.0013 Score=64.77 Aligned_cols=70 Identities=14% Similarity=0.209 Sum_probs=42.0
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc---------------------CChHHHHHHH---HH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV---------------------EGNKHLRKVL---IA 274 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~---------------------~~~~~l~~l~---~~ 274 (419)
|++..+-+.+|||||||||+|+-.++... +..+..++...- .+...+..++ ..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 34444448999999999999998776443 344444433210 1111122222 22
Q ss_pred ccCCeEEEEecCccccc
Q 040638 275 TENKSILVVEDIDCCTE 291 (419)
Q Consensus 275 ~~~~sIlviddiD~~~~ 291 (419)
.....+||||-+-++.+
T Consensus 131 s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 131 SGAVDLIVVDSVAALVP 147 (325)
T ss_pred ccCCCEEEEcchHhhcc
Confidence 34678999999988765
No 362
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00029 Score=67.64 Aligned_cols=44 Identities=30% Similarity=0.437 Sum_probs=35.7
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
+..+.+..+.| +-|+||+|+||||+.++||+....+-+.+.+..
T Consensus 18 ~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~ 63 (345)
T COG1118 18 LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG 63 (345)
T ss_pred cccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECC
Confidence 33455566666 889999999999999999999998888777644
No 363
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.20 E-value=0.00012 Score=68.35 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=34.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 67 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFE 67 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 455556666667 88999999999999999999887766666554
No 364
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.20 E-value=0.0017 Score=65.38 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=24.6
Q ss_pred ccccCc--eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 223 KAWKRG--YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 223 ~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
.+..+| +++.||||||||+|++++++.+.
T Consensus 163 ~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 163 APIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred EEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 344556 89999999999999999999864
No 365
>PRK06762 hypothetical protein; Provisional
Probab=97.20 E-value=0.00039 Score=61.54 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=26.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
+-++|.|+||+||||+++.++..++..++.++
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~ 34 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVS 34 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEec
Confidence 34789999999999999999999965555554
No 366
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.20 E-value=0.0014 Score=64.47 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~ 249 (419)
|++..+-++++||||||||+|+-.++..
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~ 78 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAE 78 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3454555899999999999997765543
No 367
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.19 E-value=0.00041 Score=69.58 Aligned_cols=45 Identities=22% Similarity=0.478 Sum_probs=39.0
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
++++....+.+++++.+. .+|+|+-||||.||||+|+|+|.++..
T Consensus 245 ~ledY~L~dkl~eRL~er------------------aeGILIAG~PGaGKsTFaqAlAefy~~ 289 (604)
T COG1855 245 SLEDYGLSDKLKERLEER------------------AEGILIAGAPGAGKSTFAQALAEFYAS 289 (604)
T ss_pred chhhcCCCHHHHHHHHhh------------------hcceEEecCCCCChhHHHHHHHHHHHh
Confidence 788988998888888542 479999999999999999999999844
No 368
>PRK14530 adenylate kinase; Provisional
Probab=97.19 E-value=0.00033 Score=64.97 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=26.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-++|.||||+||||+++.+|..+++..++
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~ 33 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVT 33 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48899999999999999999999987663
No 369
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=97.19 E-value=0.00025 Score=65.46 Aligned_cols=44 Identities=18% Similarity=0.275 Sum_probs=34.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 15 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~ 60 (213)
T cd03301 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60 (213)
T ss_pred eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 455556666666 88999999999999999999987776666553
No 370
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.19 E-value=0.00055 Score=62.76 Aligned_cols=61 Identities=20% Similarity=0.314 Sum_probs=37.8
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCT 290 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~ 290 (419)
|.....-++|.|+.|+||||+++.|+...-.+ ......+.. ....+...-|+.+||++.+.
T Consensus 48 g~k~d~~lvl~G~QG~GKStf~~~L~~~~~~d----~~~~~~~kd----~~~~l~~~~iveldEl~~~~ 108 (198)
T PF05272_consen 48 GCKNDTVLVLVGKQGIGKSTFFRKLGPEYFSD----SINDFDDKD----FLEQLQGKWIVELDELDGLS 108 (198)
T ss_pred CCcCceeeeEecCCcccHHHHHHHHhHHhccC----ccccCCCcH----HHHHHHHhHheeHHHHhhcc
Confidence 33444457899999999999999997662111 122222222 22334455788899998653
No 371
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=97.19 E-value=0.00035 Score=65.81 Aligned_cols=49 Identities=14% Similarity=0.348 Sum_probs=39.4
Q ss_pred hchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 213 KRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 213 ~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
..+..++.+.+....| +.|.||+|+|||||+++||+.+..+-+.+.+..
T Consensus 32 ~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g 82 (236)
T cd03267 32 REVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG 82 (236)
T ss_pred CCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 3445677777777777 889999999999999999999877777766543
No 372
>PRK13946 shikimate kinase; Provisional
Probab=97.19 E-value=0.00032 Score=63.51 Aligned_cols=34 Identities=32% Similarity=0.490 Sum_probs=30.5
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
++.++|.|+|||||||+++.+|..|++++++.+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 4569999999999999999999999999987663
No 373
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.18 E-value=0.0079 Score=67.48 Aligned_cols=33 Identities=30% Similarity=0.322 Sum_probs=26.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
+-+++.||+|.||||++...+...+ ++.-+.+.
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~ 65 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLD 65 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecC
Confidence 3489999999999999999887666 55555553
No 374
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.18 E-value=0.00022 Score=66.77 Aligned_cols=45 Identities=22% Similarity=0.371 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 445556666667 899999999999999999999877666665543
No 375
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.18 E-value=0.00027 Score=65.22 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+....| +.|.||+|+|||||+++||+.+..+-+.+.+..
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNG 62 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 345555566666 889999999999999999999887777666543
No 376
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.18 E-value=0.0044 Score=62.55 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=34.5
Q ss_pred EEEEecC--CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 349 IIVFTTN--HKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 349 iiV~tTN--~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
+|+.|++ ....|..|| |.|.-..|.++.|+++.-+..+.+.|...
T Consensus 186 VIFlT~dv~~~k~LskaL--Pn~vf~tI~L~Das~~~Ak~yV~~~L~~~ 232 (431)
T PF10443_consen 186 VIFLTDDVSYSKPLSKAL--PNRVFKTISLSDASPESAKQYVLSQLDED 232 (431)
T ss_pred EEEECCCCchhhhHHHhC--CCCceeEEeecCCCHHHHHHHHHHHhccc
Confidence 4444443 334567787 66888999999999999999999999764
No 377
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.18 E-value=0.00029 Score=65.09 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=35.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 17 il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 63 (214)
T TIGR02673 17 ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAG 63 (214)
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 345555666666 889999999999999999999877766665543
No 378
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.17 E-value=0.00012 Score=67.73 Aligned_cols=44 Identities=27% Similarity=0.368 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 59 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEEC
Confidence 455566666666 88999999999999999999987776666653
No 379
>PRK02496 adk adenylate kinase; Provisional
Probab=97.17 E-value=0.00037 Score=62.87 Aligned_cols=29 Identities=28% Similarity=0.531 Sum_probs=25.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+++.||||+||||+++.+|..+++..+..
T Consensus 4 i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 78999999999999999999998876543
No 380
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.17 E-value=0.00029 Score=64.69 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=35.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++||+.+..+-+.+.+..
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 61 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 445555666666 889999999999999999999887777666543
No 381
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.17 E-value=0.0013 Score=59.53 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=38.7
Q ss_pred eEEeCCCCCcHHHHHHHHHH-H----cCCcE---------E-----EEEecc-cC--------ChHHHHHHHHHccCCeE
Q 040638 229 YLLFGPLGTGKSSLIAAMAN-Y----LHFDV---------Y-----DLELSS-VE--------GNKHLRKVLIATENKSI 280 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~-~----l~~~v---------~-----~l~l~~-~~--------~~~~l~~l~~~~~~~sI 280 (419)
++|.||+|+|||+++++++- . .|..+ + .+.... +. .-..+..++.....|++
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 68999999999999999982 2 22211 1 111111 00 11233444555568999
Q ss_pred EEEecCccccc
Q 040638 281 LVVEDIDCCTE 291 (419)
Q Consensus 281 lviddiD~~~~ 291 (419)
+++||+..-.+
T Consensus 82 lllDEp~~g~d 92 (185)
T smart00534 82 VLLDELGRGTS 92 (185)
T ss_pred EEEecCCCCCC
Confidence 99999986554
No 382
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.17 E-value=0.00014 Score=68.16 Aligned_cols=45 Identities=20% Similarity=0.295 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++||+.+...-+.+.+..
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 66 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDG 66 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 455556666666 889999999999999999999977666665543
No 383
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.16 E-value=0.0071 Score=61.97 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=26.8
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSS 261 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~ 261 (419)
+-++|.||+|+||||++..+|..+ +..+.-+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 348899999999999999998765 24566666544
No 384
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.15 E-value=0.00031 Score=66.00 Aligned_cols=45 Identities=27% Similarity=0.470 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 61 (235)
T cd03261 15 VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDG 61 (235)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 345555666666 889999999999999999999887777666543
No 385
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.14 E-value=0.00069 Score=51.00 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=20.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.+.|+||+||||++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999999997
No 386
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=97.14 E-value=0.00031 Score=65.21 Aligned_cols=45 Identities=16% Similarity=0.203 Sum_probs=36.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 63 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYING 63 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 455666666777 889999999999999999999877766665543
No 387
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.14 E-value=0.00044 Score=61.52 Aligned_cols=31 Identities=29% Similarity=0.466 Sum_probs=28.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.++|.|+|||||||+++.+|..+++.+++.+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 4789999999999999999999999998765
No 388
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.14 E-value=0.00032 Score=64.94 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 64 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNG 64 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 344555555666 889999999999999999999887777776643
No 389
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.13 E-value=0.00032 Score=65.20 Aligned_cols=45 Identities=27% Similarity=0.391 Sum_probs=35.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++||+.+..+-+.+.+..
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 61 (220)
T cd03265 15 AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAG 61 (220)
T ss_pred eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 344555566666 889999999999999999999877766666543
No 390
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.00041 Score=60.59 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=25.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+-+-|||||||||+++-+|..+++.++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 4578999999999999999999999875
No 391
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.12 E-value=0.00034 Score=64.61 Aligned_cols=44 Identities=23% Similarity=0.365 Sum_probs=35.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 60 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 455556666666 88999999999999999999987776666554
No 392
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.12 E-value=0.0017 Score=69.39 Aligned_cols=43 Identities=26% Similarity=0.339 Sum_probs=33.7
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++.+.+..++| +.+.||+|+|||||++.+++.+..+-+.+.+.
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~ 395 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILID 395 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEEC
Confidence 45555666666 89999999999999999999987665555443
No 393
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.12 E-value=0.0012 Score=58.49 Aligned_cols=65 Identities=23% Similarity=0.407 Sum_probs=39.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCc---------------EEEEE----ec--ccC-ChH---HHHHHHHHcc--CCe
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFD---------------VYDLE----LS--SVE-GNK---HLRKVLIATE--NKS 279 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~---------------v~~l~----l~--~~~-~~~---~l~~l~~~~~--~~s 279 (419)
+-.++.||+|+|||+++++++-.+... +-..+ .. .+. +.. .+...+.... .|.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~~~~~~la~~L~~~~~~~~~ 101 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPRP 101 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccHHHHHHHHHHHHhcCCCCCC
Confidence 358899999999999999986443221 22222 11 111 222 2333344333 789
Q ss_pred EEEEecCccccc
Q 040638 280 ILVVEDIDCCTE 291 (419)
Q Consensus 280 IlviddiD~~~~ 291 (419)
++++||+..-++
T Consensus 102 llllDEp~~gld 113 (162)
T cd03227 102 LYILDEIDRGLD 113 (162)
T ss_pred EEEEeCCCCCCC
Confidence 999999986654
No 394
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.12 E-value=0.00035 Score=64.44 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=34.1
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+....| +.|.||+|+|||||+++||+.+..+-+.+.+..
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 61 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDG 61 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 44445555556 889999999999999999999877766666543
No 395
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.12 E-value=0.00034 Score=65.22 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=35.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 66 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDG 66 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 455556666677 899999999999999999999877767666543
No 396
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=97.11 E-value=0.0003 Score=65.40 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 61 (222)
T cd03224 15 ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61 (222)
T ss_pred EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 455556666666 889999999999999999999877666665543
No 397
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.11 E-value=0.0004 Score=59.34 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=23.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
-++|.|+.|+||||+++++++.++..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 38899999999999999999999864
No 398
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.10 E-value=0.00043 Score=64.59 Aligned_cols=45 Identities=24% Similarity=0.352 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+ ...-+.+.+..
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 66 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDG 66 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECC
Confidence 455556666666 8899999999999999999998 76667666543
No 399
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.10 E-value=0.00035 Score=65.92 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+....| +.|.||+|+|||||+++||+.+..+-+.+.+..
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 63 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAG 63 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 445555666666 899999999999999999999877766666543
No 400
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.10 E-value=0.00078 Score=61.77 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=19.0
Q ss_pred ceEEeCCCCCcHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMA 247 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA 247 (419)
-++|.||+|+|||||++.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 49999999999999999998
No 401
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.10 E-value=0.00034 Score=61.84 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=25.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+++.|.|||||||+++.++ .++++++.+
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 6899999999999999999 999887754
No 402
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.09 E-value=0.0011 Score=63.83 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=24.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
.++++.||||+|||||++++++.+....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~ 139 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGI 139 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCC
Confidence 4689999999999999999999987653
No 403
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.09 E-value=0.00038 Score=64.70 Aligned_cols=44 Identities=23% Similarity=0.329 Sum_probs=34.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 64 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVD 64 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 455556666666 88999999999999999999987766666553
No 404
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.09 E-value=0.00035 Score=64.02 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=36.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+.+.+| +.|.||+|+|||||+++|++....+-+.+.+..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g 62 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECC
Confidence 455666666677 889999999999999999999877766666543
No 405
>PRK06547 hypothetical protein; Provisional
Probab=97.09 E-value=0.00047 Score=61.77 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=27.0
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.-+++.||+||||||+++.+|..++..++.+
T Consensus 15 ~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 15 MITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 44588899999999999999999988776644
No 406
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.08 E-value=0.0005 Score=61.95 Aligned_cols=25 Identities=40% Similarity=0.679 Sum_probs=22.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
+++.||||+||||+|+.+|+.++..
T Consensus 3 iiilG~pGaGK~T~A~~La~~~~i~ 27 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKLGLP 27 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999995543
No 407
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.08 E-value=0.00038 Score=65.35 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=34.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 61 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECC
Confidence 345555566666 889999999999999999999877666665543
No 408
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.08 E-value=0.00035 Score=65.81 Aligned_cols=44 Identities=25% Similarity=0.348 Sum_probs=33.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 62 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 344555565666 88999999999999999999987666655543
No 409
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.0022 Score=59.93 Aligned_cols=63 Identities=17% Similarity=0.283 Sum_probs=40.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHH-Hc----CC---------cEE---EEEec---ccC--------ChHHHHHHHHHccCC
Q 040638 227 RGYLLFGPLGTGKSSLIAAMAN-YL----HF---------DVY---DLELS---SVE--------GNKHLRKVLIATENK 278 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~-~l----~~---------~v~---~l~l~---~~~--------~~~~l~~l~~~~~~~ 278 (419)
+-++|.||+|+|||++.+.++. .+ |. .++ ...+. ++. .-..+..++..+..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~~~~~ 111 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSNCTSR 111 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHhCCCC
Confidence 3489999999999999999987 22 11 111 01111 010 113355567777889
Q ss_pred eEEEEecCccc
Q 040638 279 SILVVEDIDCC 289 (419)
Q Consensus 279 sIlviddiD~~ 289 (419)
+++++||+..-
T Consensus 112 sLvllDE~~~g 122 (222)
T cd03287 112 SLVILDELGRG 122 (222)
T ss_pred eEEEEccCCCC
Confidence 99999999743
No 410
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.07 E-value=0.00045 Score=62.10 Aligned_cols=43 Identities=28% Similarity=0.403 Sum_probs=32.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+...-..+.+
T Consensus 15 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (178)
T cd03229 15 VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59 (178)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 345555666666 7899999999999999999988665554443
No 411
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=97.07 E-value=0.00037 Score=65.25 Aligned_cols=44 Identities=25% Similarity=0.330 Sum_probs=33.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 60 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 445555566666 88999999999999999999987665655543
No 412
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.07 E-value=0.0024 Score=65.86 Aligned_cols=70 Identities=23% Similarity=0.263 Sum_probs=44.6
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC--------------------ChHHHHHHHHHc--c
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE--------------------GNKHLRKVLIAT--E 276 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~--------------------~~~~l~~l~~~~--~ 276 (419)
|++...-++|+||||+|||+|+..+|... +..+..+....-. .+..+..++... .
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~ 155 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE 155 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh
Confidence 34444458999999999999999998765 4566665543210 011122222222 3
Q ss_pred CCeEEEEecCccccc
Q 040638 277 NKSILVVEDIDCCTE 291 (419)
Q Consensus 277 ~~sIlviddiD~~~~ 291 (419)
++.++|||.|..+..
T Consensus 156 ~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 156 KPDLVVIDSIQTMYS 170 (446)
T ss_pred CCCEEEEechhhhcc
Confidence 578999999987643
No 413
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.07 E-value=0.00038 Score=64.34 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=18.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.++.||||||||+++.+++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7899999999998888777766
No 414
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=97.07 E-value=0.00039 Score=65.24 Aligned_cols=45 Identities=20% Similarity=0.268 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 70 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNG 70 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 345555566666 889999999999999999999887777776644
No 415
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=97.06 E-value=0.00039 Score=64.56 Aligned_cols=45 Identities=18% Similarity=0.289 Sum_probs=34.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+....| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 66 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNG 66 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 344455555566 889999999999999999999887777666543
No 416
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=97.06 E-value=0.00045 Score=64.53 Aligned_cols=44 Identities=32% Similarity=0.371 Sum_probs=34.7
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
+..+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g 71 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVG 71 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECC
Confidence 44455555666 899999999999999999999887777666543
No 417
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.05 E-value=0.00045 Score=63.71 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=33.2
Q ss_pred hhhcCccccCc-eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG-YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG-~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 16 l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 60 (211)
T cd03264 16 LDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60 (211)
T ss_pred EcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCCCCCccEEEECC
Confidence 34444444445 678999999999999999999887777766544
No 418
>PRK14528 adenylate kinase; Provisional
Probab=97.05 E-value=0.00054 Score=62.16 Aligned_cols=28 Identities=21% Similarity=0.450 Sum_probs=25.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+++.||||+||||+++.+|..+++..+.
T Consensus 4 i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 4 IIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 7899999999999999999999887654
No 419
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.05 E-value=0.00042 Score=62.48 Aligned_cols=43 Identities=21% Similarity=0.228 Sum_probs=32.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 344555566666 8899999999999999999998655444433
No 420
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.05 E-value=0.0022 Score=61.47 Aligned_cols=84 Identities=20% Similarity=0.378 Sum_probs=51.9
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc-eEEeCCCCCcHHHHHHHHHHHcCC---cEEEEE------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG-YLLFGPLGTGKSSLIAAMANYLHF---DVYDLE------ 258 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG-~LL~GPpGtGKTsL~~aiA~~l~~---~v~~l~------ 258 (419)
.+++++++.++..+.+.+.+. -++| +++.||+|+||||+++++.+++.. .++.++
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~---------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~ 121 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE---------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ 121 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh---------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec
Confidence 468888887776665533221 1345 789999999999999999887742 233331
Q ss_pred eccc-----C--ChHHHHHHHHHc--cCCeEEEEecCc
Q 040638 259 LSSV-----E--GNKHLRKVLIAT--ENKSILVVEDID 287 (419)
Q Consensus 259 l~~~-----~--~~~~l~~l~~~~--~~~sIlviddiD 287 (419)
+..+ . ........+..+ ..|.+|++.|+.
T Consensus 122 ~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 122 IPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred CCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 1111 1 111233333322 569999999995
No 421
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.05 E-value=0.0026 Score=58.66 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=19.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHH
Q 040638 227 RGYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~ 248 (419)
+-++|.||+|+|||+++++++.
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999974
No 422
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.04 E-value=0.00051 Score=62.66 Aligned_cols=42 Identities=29% Similarity=0.334 Sum_probs=31.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc--CCcEEEEE
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL--HFDVYDLE 258 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l--~~~v~~l~ 258 (419)
.++.+.+...+| +.|.||+|+|||||+++||+.+ ...-+.+.
T Consensus 24 ~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~ 69 (194)
T cd03213 24 LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69 (194)
T ss_pred ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEE
Confidence 345555555666 8899999999999999999998 65544443
No 423
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.04 E-value=0.00036 Score=65.79 Aligned_cols=45 Identities=20% Similarity=0.291 Sum_probs=35.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 18 ~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (241)
T PRK10895 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDD 64 (241)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 455556666666 889999999999999999999877666665543
No 424
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.04 E-value=0.0029 Score=63.92 Aligned_cols=63 Identities=14% Similarity=0.236 Sum_probs=38.8
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc-CCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL-HFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
...+++.||||||||+++.+++.+. -..-.......+-.+- -.+.+......-+++|||+..+
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L-~~~~lg~v~~~DlLI~DEvgyl 272 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNI-STRQIGLVGRWDVVAFDEVATL 272 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHH-HHHHHhhhccCCEEEEEcCCCC
Confidence 3469999999999999999988762 1111111211111110 1133444566789999999864
No 425
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.04 E-value=0.0002 Score=65.39 Aligned_cols=44 Identities=25% Similarity=0.430 Sum_probs=31.9
Q ss_pred HHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc
Q 040638 207 DLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 207 ~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++..++..+...+.+....+.+ .-|.||+||||||+++++-..-
T Consensus 12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 3444555556666666665555 7899999999999999986543
No 426
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.03 E-value=0.00062 Score=61.45 Aligned_cols=44 Identities=23% Similarity=0.458 Sum_probs=33.2
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++++++....| +.+.||+|||||||...+|+...+.-..+.+..
T Consensus 21 le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~ 66 (259)
T COG4525 21 LEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNG 66 (259)
T ss_pred hhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECC
Confidence 34444455555 888999999999999999999977766665543
No 427
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.03 E-value=0.00043 Score=66.13 Aligned_cols=43 Identities=21% Similarity=0.227 Sum_probs=32.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 27 il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~ 71 (257)
T PRK11247 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71 (257)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 344555555666 8899999999999999999998766555543
No 428
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=97.03 E-value=0.00045 Score=64.03 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=34.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 66 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDG 66 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECC
Confidence 345555565666 889999999999999999999877666665543
No 429
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.03 E-value=0.00048 Score=64.82 Aligned_cols=44 Identities=23% Similarity=0.372 Sum_probs=33.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.+..+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 61 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEEC
Confidence 445555666666 88999999999999999999887665555543
No 430
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.03 E-value=0.00058 Score=63.09 Aligned_cols=28 Identities=25% Similarity=0.447 Sum_probs=25.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+++.||||+||||+++.+|..+++..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 7899999999999999999999877654
No 431
>PRK06696 uridine kinase; Validated
Probab=97.03 E-value=0.0018 Score=60.51 Aligned_cols=36 Identities=14% Similarity=0.187 Sum_probs=29.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE 263 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~ 263 (419)
-+.+.|+||+||||+++.|+..| +..++.+.+.++.
T Consensus 24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 47899999999999999999998 5566666665553
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.03 E-value=0.00069 Score=49.81 Aligned_cols=22 Identities=45% Similarity=0.759 Sum_probs=20.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.+|+||+|+||||++.||.-.|
T Consensus 26 tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 26 TLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999997655
No 433
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.03 E-value=0.00057 Score=64.15 Aligned_cols=29 Identities=21% Similarity=0.474 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..+++..+.+
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~g~~~is~ 37 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKENLKHINM 37 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 89999999999999999999998876644
No 434
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.02 E-value=0.00048 Score=64.36 Aligned_cols=44 Identities=20% Similarity=0.404 Sum_probs=34.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++||+.+..+-+.+.+.
T Consensus 18 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (229)
T cd03254 18 VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILID 63 (229)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 345555666667 88999999999999999999987665655543
No 435
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.02 E-value=0.00048 Score=61.73 Aligned_cols=31 Identities=29% Similarity=0.280 Sum_probs=25.8
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+-++|.||||+||||++++++..++...+.+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~ 33 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHF 33 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCcccc
Confidence 3488999999999999999999887655433
No 436
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=97.02 E-value=0.00046 Score=64.86 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=34.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~ 61 (236)
T TIGR03864 16 ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVA 61 (236)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 445555555666 88999999999999999999987666665543
No 437
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.02 E-value=0.00057 Score=61.91 Aligned_cols=28 Identities=36% Similarity=0.526 Sum_probs=24.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
-+.|.||+|+||||+++.+++.++.++.
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 3789999999999999999998876543
No 438
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=97.01 E-value=0.00045 Score=65.89 Aligned_cols=42 Identities=19% Similarity=0.501 Sum_probs=32.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.+..+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~ 59 (255)
T PRK11248 16 ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59 (255)
T ss_pred eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence 345555666666 889999999999999999998865544443
No 439
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=97.01 E-value=0.0008 Score=56.71 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=40.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC--------------------cEEEEEecccCChHHHHHH--HHHccCCeEEEEecC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF--------------------DVYDLELSSVEGNKHLRKV--LIATENKSILVVEDI 286 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~--------------------~v~~l~l~~~~~~~~l~~l--~~~~~~~sIlviddi 286 (419)
++|+|+=|+||||+++++|..++. .++.+++--+.+...+..+ +......+|.+||=-
T Consensus 18 i~L~GdLGaGKTtf~r~l~~~lg~~~~V~SPTF~l~~~Y~~~~~~l~H~DLYRl~~~~e~~~~g~~e~~~~~~i~~IEW~ 97 (123)
T PF02367_consen 18 ILLSGDLGAGKTTFVRGLARALGIDEEVTSPTFSLVNEYEGGNIPLYHFDLYRLEDPEELEDLGLEEYLFEDGICVIEWP 97 (123)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT--S----TTTTSEEEEEETTEEEEEEE-TT-SSTHHHHHCTTTTCSSSSEEEEEESG
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCCCcCCCCeEEEEEecCCCceEEEeeccccCCHHHHHHCCchhhhCCCCEEEEECc
Confidence 899999999999999999999964 2444555455555544442 223355788888744
Q ss_pred ccc
Q 040638 287 DCC 289 (419)
Q Consensus 287 D~~ 289 (419)
+.+
T Consensus 98 e~~ 100 (123)
T PF02367_consen 98 ERL 100 (123)
T ss_dssp GGG
T ss_pred ccc
Confidence 433
No 440
>PRK10908 cell division protein FtsE; Provisional
Probab=97.01 E-value=0.00052 Score=63.87 Aligned_cols=45 Identities=22% Similarity=0.237 Sum_probs=35.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-..+.+..
T Consensus 17 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 63 (222)
T PRK10908 17 ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSG 63 (222)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 345555566666 889999999999999999999887777766543
No 441
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.01 E-value=0.00045 Score=65.63 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=34.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 15 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (252)
T TIGR03005 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60 (252)
T ss_pred EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 445555666666 88999999999999999999987776666554
No 442
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.01 E-value=0.00045 Score=67.62 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=35.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g 54 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAG 54 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 455566666667 789999999999999999999987767666543
No 443
>PRK13764 ATPase; Provisional
Probab=97.01 E-value=0.0019 Score=68.42 Aligned_cols=26 Identities=35% Similarity=0.635 Sum_probs=23.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
++++|+.||||+||||+++|+++++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56799999999999999999999885
No 444
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.01 E-value=0.00015 Score=68.38 Aligned_cols=45 Identities=16% Similarity=0.279 Sum_probs=34.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g 63 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC
Confidence 455556666666 789999999999999999999876666555543
No 445
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.01 E-value=0.00054 Score=64.92 Aligned_cols=44 Identities=18% Similarity=0.343 Sum_probs=34.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 63 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG 63 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEEC
Confidence 345555666666 88999999999999999999987666655543
No 446
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.00 E-value=0.0005 Score=63.26 Aligned_cols=45 Identities=20% Similarity=0.421 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 15 ~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 61 (208)
T cd03268 15 VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDG 61 (208)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECC
Confidence 344455555666 889999999999999999999887777776644
No 447
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.00 E-value=0.013 Score=55.23 Aligned_cols=45 Identities=16% Similarity=0.116 Sum_probs=35.2
Q ss_pred EEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 348 RIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 348 ~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.-+|+++...-.|||.++. =++..+-+. -+..+.+.|++++....
T Consensus 129 is~i~l~Q~~~~lp~~iR~--n~~y~i~~~-~s~~dl~~i~~~~~~~~ 173 (241)
T PF04665_consen 129 ISIIFLSQSYFHLPPNIRS--NIDYFIIFN-NSKRDLENIYRNMNIKG 173 (241)
T ss_pred eEEEEEeeecccCCHHHhh--cceEEEEec-CcHHHHHHHHHhccccc
Confidence 6677888888889999866 788888776 47888888888876543
No 448
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.00 E-value=0.003 Score=61.73 Aligned_cols=25 Identities=28% Similarity=0.565 Sum_probs=23.1
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++++++.||+|+||||+++++++++
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4579999999999999999999987
No 449
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.00 E-value=0.00066 Score=62.96 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++++||||+||||+++.+|..+++..+.+
T Consensus 3 I~v~G~pGsGKsT~a~~la~~~~~~~is~ 31 (215)
T PRK00279 3 LILLGPPGAGKGTQAKFIAEKYGIPHIST 31 (215)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence 78999999999999999999999776653
No 450
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.99 E-value=0.00053 Score=64.63 Aligned_cols=45 Identities=22% Similarity=0.428 Sum_probs=34.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 62 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDG 62 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 445555566666 889999999999999999999877666665543
No 451
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.99 E-value=0.00058 Score=63.97 Aligned_cols=41 Identities=29% Similarity=0.338 Sum_probs=31.8
Q ss_pred hcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCC----cEEEEEec
Q 040638 220 RVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHF----DVYDLELS 260 (419)
Q Consensus 220 ~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~----~v~~l~l~ 260 (419)
.+.+....| +.|.||+|+|||||+++|++.+.. +-+.+.+.
T Consensus 4 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~ 50 (230)
T TIGR02770 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLD 50 (230)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEEC
Confidence 344455556 889999999999999999999876 55655553
No 452
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.99 E-value=0.0005 Score=57.50 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++|.|+||+||||+++.++..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999988
No 453
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.99 E-value=0.0033 Score=63.30 Aligned_cols=69 Identities=20% Similarity=0.241 Sum_probs=43.3
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC--------------------ChHHHHHHHH--Hcc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE--------------------GNKHLRKVLI--ATE 276 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~--------------------~~~~l~~l~~--~~~ 276 (419)
|+....-++|+||||+|||+|+..+|..+ +..+..+....-. ....+..++. ...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~ 157 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL 157 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc
Confidence 34444458999999999999999998765 2355555432210 0111222222 224
Q ss_pred CCeEEEEecCcccc
Q 040638 277 NKSILVVEDIDCCT 290 (419)
Q Consensus 277 ~~sIlviddiD~~~ 290 (419)
++.++|||+|..+.
T Consensus 158 ~~~lVVIDSIq~l~ 171 (372)
T cd01121 158 KPDLVIIDSIQTVY 171 (372)
T ss_pred CCcEEEEcchHHhh
Confidence 68899999998764
No 454
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.99 E-value=0.00052 Score=66.02 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=34.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 16 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 61 (271)
T PRK13638 16 VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQ 61 (271)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEEC
Confidence 455556666666 88999999999999999999987666655543
No 455
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.99 E-value=0.00043 Score=63.61 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=34.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~ 61 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQ 61 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 344555566666 88999999999999999999987776666554
No 456
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.99 E-value=0.0005 Score=63.10 Aligned_cols=43 Identities=26% Similarity=0.411 Sum_probs=33.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~ 64 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSV 64 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEE
Confidence 455566666667 8899999999999999999998766555544
No 457
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.99 E-value=0.00044 Score=65.98 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 21 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (258)
T PRK11701 21 GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67 (258)
T ss_pred eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECC
Confidence 345555666666 899999999999999999999877666665543
No 458
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.98 E-value=0.00053 Score=63.55 Aligned_cols=45 Identities=22% Similarity=0.436 Sum_probs=35.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g 72 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDG 72 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECC
Confidence 344555555666 889999999999999999999887777766644
No 459
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.98 E-value=0.00055 Score=64.19 Aligned_cols=39 Identities=26% Similarity=0.335 Sum_probs=30.1
Q ss_pred cCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 221 VGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 221 ~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 4 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 44 (230)
T TIGR01184 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 34445556 8999999999999999999998765555544
No 460
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.98 E-value=0.0022 Score=59.30 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
..|+.|||||||||+.+-+|+.+..
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~s~ 163 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLLSD 163 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHhhc
Confidence 4789999999999999999987743
No 461
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=96.98 E-value=0.00078 Score=64.63 Aligned_cols=41 Identities=24% Similarity=0.126 Sum_probs=33.0
Q ss_pred hhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 215 KDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 215 ~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+..++.+.+....| +.|.||+|+|||||+++|++.+..+-+
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 34566777777777 889999999999999999998765433
No 462
>PLN02200 adenylate kinase family protein
Probab=96.96 E-value=0.00081 Score=63.34 Aligned_cols=27 Identities=19% Similarity=0.329 Sum_probs=24.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
-+++.||||+||||+++.+|..+++..
T Consensus 45 ii~I~G~PGSGKsT~a~~La~~~g~~h 71 (234)
T PLN02200 45 ITFVLGGPGSGKGTQCEKIVETFGFKH 71 (234)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 478999999999999999999998754
No 463
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.96 E-value=0.0024 Score=60.16 Aligned_cols=42 Identities=29% Similarity=0.470 Sum_probs=33.1
Q ss_pred hcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 220 RVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 220 ~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+++..+.| ++|.||+|+|||||++.+++.+......+.+..
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g 65 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDG 65 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECC
Confidence 334445555 899999999999999999999988877665544
No 464
>PRK04182 cytidylate kinase; Provisional
Probab=96.96 E-value=0.00074 Score=60.23 Aligned_cols=28 Identities=25% Similarity=0.436 Sum_probs=26.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
++|.|+|||||||+++.+|..+++++++
T Consensus 3 I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 6899999999999999999999998775
No 465
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.96 E-value=0.00067 Score=63.27 Aligned_cols=44 Identities=27% Similarity=0.427 Sum_probs=34.5
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 75 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDG 75 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECC
Confidence 34445555666 899999999999999999999887777666543
No 466
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.96 E-value=0.00072 Score=63.14 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=33.1
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~ 261 (419)
+..+.+....| +.|.||+|+|||||+++|++.+. ..-..+.+..
T Consensus 23 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g 71 (226)
T cd03234 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNG 71 (226)
T ss_pred ccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECC
Confidence 44445555555 88999999999999999999987 5656555533
No 467
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.96 E-value=0.00052 Score=65.23 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=34.2
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g 66 (255)
T PRK11300 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66 (255)
T ss_pred EEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECC
Confidence 44455555566 889999999999999999999877766666543
No 468
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.95 E-value=0.00064 Score=63.14 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=34.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+++..++| +.|.||+|+|||||+++||+.+...-+.+.+..
T Consensus 19 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 65 (221)
T cd03244 19 VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDG 65 (221)
T ss_pred cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECC
Confidence 345556666666 889999999999999999999877666665533
No 469
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.95 E-value=0.00059 Score=64.83 Aligned_cols=44 Identities=27% Similarity=0.277 Sum_probs=34.2
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g 64 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIM 64 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEec
Confidence 34445555566 899999999999999999999877766666543
No 470
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.95 E-value=0.00049 Score=65.73 Aligned_cols=44 Identities=30% Similarity=0.482 Sum_probs=34.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~ 62 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLN 62 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 455556666666 88999999999999999999987665655543
No 471
>PRK14527 adenylate kinase; Provisional
Probab=96.95 E-value=0.00057 Score=62.15 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=24.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
-++++||||+||||+++.+|..++...+
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 4899999999999999999998877544
No 472
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.94 E-value=0.0027 Score=62.29 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=25.5
Q ss_pred cccCceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 224 AWKRGYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 224 ~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
..++|+.||||-|+|||.|....-..+...
T Consensus 63 ~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~ 92 (367)
T COG1485 63 GPVRGLYLWGGVGRGKTMLMDLFYESLPGE 92 (367)
T ss_pred CCCceEEEECCCCccHHHHHHHHHhhCCcc
Confidence 467899999999999999999888777543
No 473
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.94 E-value=0.00055 Score=64.37 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=33.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~ 62 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILL 62 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEE
Confidence 345555666666 8999999999999999999998766555544
No 474
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.94 E-value=0.003 Score=56.38 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=27.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
+|+.||||+|||+++..++...+.+++.+....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~ 34 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAE 34 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccC
Confidence 689999999999999999988776777665543
No 475
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.93 E-value=0.00059 Score=63.31 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=34.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..++| +.|.||+|+|||||+++||+.+..+-..+.+.
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 61 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWS 61 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEEC
Confidence 345555566666 88999999999999999999987766666553
No 476
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00075 Score=63.29 Aligned_cols=43 Identities=28% Similarity=0.445 Sum_probs=34.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+++...+| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 15 il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~ 59 (232)
T cd03300 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59 (232)
T ss_pred eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 455666666666 8999999999999999999998776665544
No 477
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.93 E-value=0.00061 Score=63.86 Aligned_cols=43 Identities=26% Similarity=0.466 Sum_probs=33.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..++| +.|.||+|+|||||+++||+.+...-+.+.+
T Consensus 17 ~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (234)
T cd03251 17 VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILI 61 (234)
T ss_pred ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEE
Confidence 345556666667 8899999999999999999998766555554
No 478
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.93 E-value=0.0031 Score=57.69 Aligned_cols=36 Identities=33% Similarity=0.429 Sum_probs=27.9
Q ss_pred hchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHH
Q 040638 213 KRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 213 ~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~ 248 (419)
.+.+.-+++|--.|-| +++.|+.|||||-|.+.+|-
T Consensus 13 gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~Y 50 (235)
T COG2874 13 GNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAY 50 (235)
T ss_pred CcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHH
Confidence 4556667776555555 88999999999999998873
No 479
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.93 E-value=0.0006 Score=64.37 Aligned_cols=43 Identities=23% Similarity=0.486 Sum_probs=33.1
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
+..+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 63 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 44455555666 88999999999999999999987665655543
No 480
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.92 E-value=0.00056 Score=63.59 Aligned_cols=54 Identities=20% Similarity=0.289 Sum_probs=43.8
Q ss_pred HHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 209 ERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 209 ~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
..-+.++..++.+.+..++| +-+.||+|||||+|.+.|.+.+..+-..+.+...
T Consensus 15 ~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~ 70 (263)
T COG1127 15 TKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGE 70 (263)
T ss_pred eeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCc
Confidence 33445666777888888888 6688999999999999999999988877776544
No 481
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.92 E-value=0.00073 Score=62.17 Aligned_cols=43 Identities=30% Similarity=0.441 Sum_probs=33.3
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++.+.+..++| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 68 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEID 68 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEEC
Confidence 44455566666 88999999999999999999887665555553
No 482
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=96.92 E-value=0.00061 Score=66.70 Aligned_cols=44 Identities=23% Similarity=0.364 Sum_probs=34.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~ 64 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 345556666667 88999999999999999999987766666553
No 483
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=96.92 E-value=0.00064 Score=65.17 Aligned_cols=45 Identities=20% Similarity=0.207 Sum_probs=35.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 26 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 72 (265)
T TIGR02769 26 VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRG 72 (265)
T ss_pred EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 345555666666 889999999999999999999877766665543
No 484
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.92 E-value=0.00059 Score=59.51 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.1
Q ss_pred EeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 231 LFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 231 L~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
|.||||+||||+++.||..+++..+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~i 25 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHI 25 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCccee
Confidence 5799999999999999999887544
No 485
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.92 E-value=0.00061 Score=64.04 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=34.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~ 62 (237)
T cd03252 17 ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVD 62 (237)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEEC
Confidence 345556666677 89999999999999999999987665555443
No 486
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.91 E-value=0.00065 Score=63.04 Aligned_cols=44 Identities=23% Similarity=0.336 Sum_probs=33.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 19 ~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~ 64 (220)
T cd03245 19 ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLD 64 (220)
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEEC
Confidence 345555555666 88999999999999999999987665555543
No 487
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=96.91 E-value=0.00063 Score=65.30 Aligned_cols=44 Identities=20% Similarity=0.330 Sum_probs=33.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~ 73 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLID 73 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 344555555666 88999999999999999999987665555543
No 488
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.91 E-value=0.00073 Score=59.69 Aligned_cols=26 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
|.|.|+||||||||+++++.. ++.+.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 679999999999999999998 66654
No 489
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.00069 Score=65.16 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=33.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 69 (271)
T PRK13632 24 ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKID 69 (271)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 345555666666 88999999999999999999987665555543
No 490
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=96.91 E-value=0.0007 Score=67.80 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=33.4
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++.+.+..+.| +.|.||+|||||||+++||+....+-+.+.+.
T Consensus 20 l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~ 64 (356)
T PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIG 64 (356)
T ss_pred EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEEC
Confidence 34455566666 78999999999999999999987766665543
No 491
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.90 E-value=0.00061 Score=62.25 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=34.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+....| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 60 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWN 60 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEEC
Confidence 344555556666 88999999999999999999887666666553
No 492
>PRK04040 adenylate kinase; Provisional
Probab=96.90 E-value=0.00085 Score=61.03 Aligned_cols=27 Identities=19% Similarity=0.406 Sum_probs=23.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc--CCcE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL--HFDV 254 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l--~~~v 254 (419)
-++++|+|||||||+++.++..+ ++.+
T Consensus 4 ~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 4 VVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 47899999999999999999999 5554
No 493
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00075 Score=64.82 Aligned_cols=44 Identities=18% Similarity=0.251 Sum_probs=34.0
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 25 l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g 70 (269)
T PRK13648 25 LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNN 70 (269)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 44455555666 889999999999999999999877666665543
No 494
>PRK14526 adenylate kinase; Provisional
Probab=96.90 E-value=0.00093 Score=61.90 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=24.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
++|.||||+||||+++.+|..++...+
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 789999999999999999999887654
No 495
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.90 E-value=0.00069 Score=65.44 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=33.6
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 23 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~ 67 (280)
T PRK13649 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVD 67 (280)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEC
Confidence 44455556666 78999999999999999999987766666554
No 496
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.90 E-value=0.00071 Score=62.33 Aligned_cols=43 Identities=26% Similarity=0.448 Sum_probs=33.1
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+.
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~ 62 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLD 62 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 44455566666 88999999999999999999887665555443
No 497
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.89 E-value=0.00068 Score=63.61 Aligned_cols=43 Identities=19% Similarity=0.396 Sum_probs=33.2
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
++.+.+...+| +.|.||+|+|||||+++|++.+..+-+.+.+.
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~ 61 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILID 61 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEEC
Confidence 44455555666 88999999999999999999987666655543
No 498
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00034 Score=63.83 Aligned_cols=51 Identities=27% Similarity=0.439 Sum_probs=40.3
Q ss_pred hchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC
Q 040638 213 KRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE 263 (419)
Q Consensus 213 ~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~ 263 (419)
.++.....+.+..+.| .-+.||+|.|||||.+++++++.++-..+.+....
T Consensus 12 ~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~ 64 (259)
T COG4559 12 AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP 64 (259)
T ss_pred ecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcC
Confidence 3455556666666666 67899999999999999999999888877776653
No 499
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.89 E-value=0.00073 Score=63.87 Aligned_cols=43 Identities=26% Similarity=0.462 Sum_probs=33.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
..+.+.+..++| +.|.||+|+|||||+++|.+.+...-+.+.+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~ 63 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEE
Confidence 444555556666 7799999999999999999988766655554
No 500
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.89 E-value=0.0014 Score=59.47 Aligned_cols=28 Identities=29% Similarity=0.615 Sum_probs=24.1
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
...+++.||+|+||||+++++++.+..+
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~ 52 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD 52 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 3459999999999999999999988543
Done!