Query 040638
Match_columns 419
No_of_seqs 371 out of 3077
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 16:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040638.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040638hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 7.8E-41 2.7E-45 333.2 19.6 212 183-418 138-359 (405)
2 4b4t_I 26S protease regulatory 100.0 2.6E-40 8.9E-45 330.3 19.3 207 188-418 178-393 (437)
3 4b4t_L 26S protease subunit RP 100.0 1.1E-39 3.8E-44 329.5 21.0 210 185-418 173-392 (437)
4 4b4t_M 26S protease regulatory 100.0 9.9E-40 3.4E-44 329.6 18.0 209 186-418 175-392 (434)
5 4b4t_K 26S protease regulatory 100.0 8.9E-40 3.1E-44 329.7 17.3 209 186-418 165-384 (428)
6 4b4t_H 26S protease regulatory 100.0 3.6E-39 1.2E-43 325.0 18.3 209 186-418 202-420 (467)
7 3cf2_A TER ATPase, transitiona 100.0 7E-35 2.4E-39 313.4 9.7 219 176-418 460-688 (806)
8 3cf2_A TER ATPase, transitiona 100.0 5.6E-33 1.9E-37 298.7 16.2 203 189-418 201-412 (806)
9 2x8a_A Nuclear valosin-contain 100.0 5.3E-30 1.8E-34 245.6 17.3 203 189-418 7-223 (274)
10 3cf0_A Transitional endoplasmi 100.0 5.5E-29 1.9E-33 241.6 17.7 208 187-418 10-226 (301)
11 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.9E-27 1.3E-31 230.8 22.3 202 188-418 8-220 (322)
12 2ce7_A Cell division protein F 100.0 1.7E-27 5.7E-32 243.8 18.9 206 188-418 12-226 (476)
13 3h4m_A Proteasome-activating n 99.9 6.3E-27 2.2E-31 224.4 17.4 208 186-417 11-227 (285)
14 1lv7_A FTSH; alpha/beta domain 99.9 1.9E-26 6.6E-31 218.2 20.1 208 186-418 6-222 (257)
15 3eie_A Vacuolar protein sortin 99.9 1.2E-26 4.2E-31 227.1 19.1 204 186-418 12-225 (322)
16 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1.4E-26 4.7E-31 218.9 17.6 207 188-418 2-219 (262)
17 2qp9_X Vacuolar protein sortin 99.9 5.2E-26 1.8E-30 225.7 18.0 203 187-418 46-258 (355)
18 3hu3_A Transitional endoplasmi 99.9 1.1E-25 3.7E-30 231.8 17.1 205 187-418 199-412 (489)
19 2dhr_A FTSH; AAA+ protein, hex 99.9 2E-25 6.7E-30 229.8 18.8 183 187-394 26-216 (499)
20 1ixz_A ATP-dependent metallopr 99.9 3.7E-25 1.3E-29 209.0 18.5 213 180-417 3-225 (254)
21 2zan_A Vacuolar protein sortin 99.9 3.8E-25 1.3E-29 225.8 17.5 203 187-418 129-342 (444)
22 3t15_A Ribulose bisphosphate c 99.9 1.1E-25 3.6E-30 217.7 11.5 173 217-417 27-220 (293)
23 2r62_A Cell division protease 99.9 2.8E-26 9.5E-31 218.2 4.5 185 187-394 6-198 (268)
24 3vfd_A Spastin; ATPase, microt 99.9 3.6E-24 1.2E-28 215.0 18.9 205 185-417 108-322 (389)
25 3d8b_A Fidgetin-like protein 1 99.9 4.8E-24 1.6E-28 211.7 17.5 204 187-418 79-292 (357)
26 3b9p_A CG5977-PA, isoform A; A 99.9 7.1E-24 2.4E-28 204.5 18.0 203 187-417 16-229 (297)
27 1iy2_A ATP-dependent metallopr 99.9 1.1E-23 3.8E-28 201.7 18.7 184 187-395 35-226 (278)
28 1ypw_A Transitional endoplasmi 99.9 2.1E-26 7.2E-31 250.7 -3.2 184 188-395 473-664 (806)
29 1ypw_A Transitional endoplasmi 99.9 3.5E-22 1.2E-26 217.5 17.7 181 188-395 200-388 (806)
30 3pfi_A Holliday junction ATP-d 99.8 1.8E-18 6.1E-23 169.6 18.1 178 178-403 17-208 (338)
31 1g41_A Heat shock protein HSLU 99.8 6.6E-20 2.2E-24 185.3 5.5 162 193-388 16-188 (444)
32 2c9o_A RUVB-like 1; hexameric 99.8 1.9E-19 6.6E-24 184.2 8.3 179 189-381 34-226 (456)
33 3syl_A Protein CBBX; photosynt 99.8 2.2E-18 7.6E-23 166.6 12.1 180 191-405 29-230 (309)
34 1hqc_A RUVB; extended AAA-ATPa 99.7 2.5E-17 8.6E-22 160.1 17.9 177 186-408 6-198 (324)
35 3u61_B DNA polymerase accessor 99.7 1.2E-16 4.1E-21 155.7 13.7 157 179-392 15-178 (324)
36 2chg_A Replication factor C sm 99.7 4.5E-16 1.6E-20 141.5 15.3 160 186-401 11-183 (226)
37 1ofh_A ATP-dependent HSL prote 99.7 2.2E-16 7.6E-21 152.1 14.0 172 193-390 16-213 (310)
38 3m6a_A ATP-dependent protease 99.7 3.4E-16 1.1E-20 163.4 11.9 160 191-392 80-266 (543)
39 1sxj_A Activator 1 95 kDa subu 99.6 1E-15 3.4E-20 159.0 14.4 177 178-399 27-229 (516)
40 1d2n_A N-ethylmaleimide-sensit 99.6 7.9E-16 2.7E-20 146.3 11.8 167 193-391 34-211 (272)
41 1njg_A DNA polymerase III subu 99.6 6.5E-15 2.2E-19 135.3 17.5 174 186-414 17-221 (250)
42 3uk6_A RUVB-like 2; hexameric 99.6 2.8E-15 9.6E-20 148.3 16.1 166 187-403 38-283 (368)
43 3hws_A ATP-dependent CLP prote 99.6 3.6E-16 1.2E-20 155.1 9.6 173 194-390 17-267 (363)
44 3pvs_A Replication-associated 99.6 1.3E-15 4.3E-20 155.3 13.4 151 185-394 19-180 (447)
45 1jbk_A CLPB protein; beta barr 99.6 1.9E-16 6.5E-21 140.6 5.2 152 187-388 17-194 (195)
46 2r44_A Uncharacterized protein 99.6 4.6E-15 1.6E-19 145.0 13.3 155 188-395 23-201 (331)
47 4fcw_A Chaperone protein CLPB; 99.6 1E-14 3.5E-19 140.8 14.8 161 192-394 17-231 (311)
48 2chq_A Replication factor C sm 99.6 4.2E-15 1.4E-19 143.5 11.8 167 185-407 10-190 (319)
49 1l8q_A Chromosomal replication 99.6 1E-14 3.5E-19 142.2 13.0 174 185-405 4-192 (324)
50 3bos_A Putative DNA replicatio 99.6 2.1E-15 7.3E-20 139.3 7.6 170 185-404 21-199 (242)
51 1sxj_D Activator 1 41 kDa subu 99.6 1.4E-14 4.8E-19 142.1 13.5 167 179-403 26-216 (353)
52 1iqp_A RFCS; clamp loader, ext 99.6 1.7E-14 5.9E-19 139.7 13.4 166 179-402 14-192 (327)
53 1jr3_A DNA polymerase III subu 99.6 4.9E-14 1.7E-18 139.3 16.2 169 186-409 10-209 (373)
54 1um8_A ATP-dependent CLP prote 99.6 8.2E-14 2.8E-18 138.7 17.8 172 193-389 22-283 (376)
55 1in4_A RUVB, holliday junction 99.5 1.9E-13 6.6E-18 134.0 19.2 183 186-414 19-216 (334)
56 1sxj_B Activator 1 37 kDa subu 99.5 3.3E-14 1.1E-18 137.5 13.4 160 186-401 15-188 (323)
57 1g8p_A Magnesium-chelatase 38 99.5 7.9E-14 2.7E-18 136.7 14.2 153 186-391 18-231 (350)
58 2v1u_A Cell division control p 99.5 2.4E-14 8.3E-19 141.7 10.3 160 190-393 17-215 (387)
59 2qby_B CDC6 homolog 3, cell di 99.5 8.9E-14 3E-18 138.0 13.7 151 192-393 20-211 (384)
60 2p65_A Hypothetical protein PF 99.5 1.1E-14 3.7E-19 129.0 5.7 145 187-380 17-187 (187)
61 1sxj_E Activator 1 40 kDa subu 99.5 1.4E-13 4.9E-18 135.3 14.1 159 185-398 7-212 (354)
62 2z4s_A Chromosomal replication 99.5 4.4E-14 1.5E-18 143.8 10.4 166 187-402 100-286 (440)
63 3pxg_A Negative regulator of g 99.5 7.7E-14 2.6E-18 143.1 11.5 147 186-394 174-340 (468)
64 1sxj_C Activator 1 40 kDa subu 99.5 3.4E-13 1.2E-17 132.3 15.6 166 179-402 14-192 (340)
65 1qvr_A CLPB protein; coiled co 99.5 9.4E-14 3.2E-18 152.4 11.0 157 187-393 165-346 (854)
66 3te6_A Regulatory protein SIR3 99.5 3.8E-13 1.3E-17 130.6 13.7 129 225-394 44-213 (318)
67 1r6b_X CLPA protein; AAA+, N-t 99.5 6.7E-13 2.3E-17 143.8 16.5 154 193-393 459-667 (758)
68 2bjv_A PSP operon transcriptio 99.5 5.6E-13 1.9E-17 126.0 13.6 155 190-393 4-195 (265)
69 3pxi_A Negative regulator of g 99.4 6.3E-13 2.1E-17 144.1 15.4 159 192-394 491-677 (758)
70 1r6b_X CLPA protein; AAA+, N-t 99.4 3.4E-13 1.2E-17 146.2 12.4 158 187-393 181-363 (758)
71 3pxi_A Negative regulator of g 99.4 3.2E-13 1.1E-17 146.4 12.0 146 187-394 175-340 (758)
72 1fnn_A CDC6P, cell division co 99.4 2.4E-12 8.2E-17 127.6 16.9 160 190-394 15-208 (389)
73 2qby_A CDC6 homolog 1, cell di 99.4 3E-13 1E-17 133.5 10.0 158 190-393 18-211 (386)
74 3n70_A Transport activator; si 99.4 1.9E-12 6.5E-17 111.4 9.3 85 193-290 2-89 (145)
75 1a5t_A Delta prime, HOLB; zinc 99.3 3.6E-11 1.2E-15 117.8 19.3 125 225-392 23-180 (334)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.3 1.3E-11 4.5E-16 127.0 13.2 128 227-393 42-197 (500)
77 1qvr_A CLPB protein; coiled co 99.3 1.4E-11 4.8E-16 135.2 13.1 160 191-393 557-771 (854)
78 1ojl_A Transcriptional regulat 99.3 2.6E-11 8.8E-16 117.3 13.4 152 193-393 3-191 (304)
79 4akg_A Glutathione S-transfera 99.3 1.8E-11 6.3E-16 145.7 13.8 137 226-393 1267-1432(2695)
80 3ec2_A DNA replication protein 99.3 9.3E-12 3.2E-16 110.6 8.6 95 187-289 5-112 (180)
81 3f9v_A Minichromosome maintena 99.3 1.1E-12 3.7E-17 138.2 2.7 127 228-394 329-492 (595)
82 1svm_A Large T antigen; AAA+ f 99.2 9.2E-12 3.1E-16 123.7 7.1 120 222-378 165-284 (377)
83 3co5_A Putative two-component 99.2 9.7E-12 3.3E-16 106.7 6.1 84 193-290 5-88 (143)
84 2gno_A DNA polymerase III, gam 99.2 6.8E-11 2.3E-15 114.4 12.6 122 227-393 19-153 (305)
85 1w5s_A Origin recognition comp 99.1 4.1E-10 1.4E-14 112.4 10.9 164 190-393 20-229 (412)
86 3cmw_A Protein RECA, recombina 99.0 1.5E-09 5.2E-14 124.5 11.4 147 189-357 1017-1218(1706)
87 1tue_A Replication protein E1; 98.9 1.7E-09 5.7E-14 97.8 7.4 59 223-287 55-113 (212)
88 2qgz_A Helicase loader, putati 98.9 8.6E-10 2.9E-14 106.8 4.6 96 188-289 120-226 (308)
89 2w58_A DNAI, primosome compone 98.9 2E-09 6.9E-14 97.0 6.4 97 187-289 20-127 (202)
90 3k1j_A LON protease, ATP-depen 98.9 1.6E-09 5.4E-14 114.4 6.1 53 186-253 35-87 (604)
91 2kjq_A DNAA-related protein; s 98.8 4.8E-09 1.7E-13 90.5 6.9 58 226-290 36-96 (149)
92 2vhj_A Ntpase P4, P4; non- hyd 98.7 4.9E-09 1.7E-13 101.2 4.9 116 222-364 119-242 (331)
93 2fna_A Conserved hypothetical 98.7 1.2E-07 3.9E-12 92.2 12.0 55 190-261 11-65 (357)
94 3vkg_A Dynein heavy chain, cyt 98.7 7.5E-08 2.6E-12 115.8 12.4 135 226-393 1304-1470(3245)
95 1u0j_A DNA replication protein 98.6 6.5E-08 2.2E-12 91.1 9.1 59 224-289 102-160 (267)
96 2r2a_A Uncharacterized protein 98.6 3.5E-08 1.2E-12 89.3 6.7 119 228-382 7-156 (199)
97 4akg_A Glutathione S-transfera 98.6 2E-07 7E-12 111.4 12.7 132 226-389 645-790 (2695)
98 2qen_A Walker-type ATPase; unk 98.6 2.6E-06 8.8E-11 82.4 18.4 174 188-414 8-239 (350)
99 3dzd_A Transcriptional regulat 98.5 3.6E-06 1.2E-10 83.2 16.2 168 193-409 130-340 (368)
100 1ny5_A Transcriptional regulat 98.3 7E-06 2.4E-10 81.7 14.4 153 192-393 137-326 (387)
101 3f8t_A Predicted ATPase involv 98.3 5.8E-07 2E-11 90.7 5.0 141 194-383 215-385 (506)
102 1ye8_A Protein THEP1, hypothet 98.2 6.8E-06 2.3E-10 72.8 10.6 27 229-255 3-29 (178)
103 3cmu_A Protein RECA, recombina 98.2 2.6E-06 9E-11 99.1 9.1 113 223-357 1424-1563(2050)
104 3vkg_A Dynein heavy chain, cyt 98.2 9.4E-06 3.2E-10 98.1 13.6 138 226-391 604-752 (3245)
105 1z6t_A APAF-1, apoptotic prote 97.9 0.00013 4.3E-09 76.3 13.7 50 188-248 120-169 (591)
106 1jr3_D DNA polymerase III, del 97.8 2.9E-05 9.8E-10 75.6 6.4 131 226-402 18-165 (343)
107 2cvh_A DNA repair and recombin 97.7 0.00016 5.5E-09 65.0 10.4 39 223-261 17-55 (220)
108 3sfz_A APAF-1, apoptotic pepti 97.7 0.00041 1.4E-08 78.2 16.0 164 187-414 119-321 (1249)
109 3vaa_A Shikimate kinase, SK; s 97.6 3.2E-05 1.1E-09 69.2 4.5 31 227-257 26-56 (199)
110 3hr8_A Protein RECA; alpha and 97.6 0.00015 5E-09 71.2 9.3 69 223-291 58-153 (356)
111 1qhx_A CPT, protein (chloramph 97.6 3.8E-05 1.3E-09 67.0 3.9 33 227-259 4-36 (178)
112 3trf_A Shikimate kinase, SK; a 97.6 5E-05 1.7E-09 66.8 4.5 32 226-257 5-36 (185)
113 1kag_A SKI, shikimate kinase I 97.5 6E-05 2.1E-09 65.4 4.5 30 227-256 5-34 (173)
114 3kb2_A SPBC2 prophage-derived 97.5 6.4E-05 2.2E-09 64.9 3.9 30 229-258 4-33 (173)
115 2rhm_A Putative kinase; P-loop 97.5 6.9E-05 2.4E-09 66.1 4.2 31 226-256 5-35 (193)
116 1y63_A LMAJ004144AAA protein; 97.4 5.9E-05 2E-09 66.6 3.2 30 228-257 12-42 (184)
117 1via_A Shikimate kinase; struc 97.4 8.5E-05 2.9E-09 64.8 4.1 29 228-256 6-34 (175)
118 1htw_A HI0065; nucleotide-bind 97.4 0.00012 4E-09 63.5 4.4 38 220-258 25-64 (158)
119 3iij_A Coilin-interacting nucl 97.4 0.00013 4.4E-09 63.9 4.4 31 227-257 12-42 (180)
120 4eun_A Thermoresistant glucoki 97.4 0.00012 4.3E-09 65.4 4.3 28 228-255 31-58 (200)
121 3nwj_A ATSK2; P loop, shikimat 97.3 8.4E-05 2.9E-09 69.4 3.1 30 228-257 50-79 (250)
122 2iyv_A Shikimate kinase, SK; t 97.3 0.00014 4.6E-09 63.9 4.3 30 228-257 4-33 (184)
123 1zuh_A Shikimate kinase; alpha 97.3 0.00014 4.8E-09 62.9 4.3 30 228-257 9-38 (168)
124 1pzn_A RAD51, DNA repair and r 97.3 0.00047 1.6E-08 67.5 8.4 28 223-250 128-155 (349)
125 2ze6_A Isopentenyl transferase 97.3 0.00012 4.2E-09 68.3 4.0 30 229-258 4-33 (253)
126 1g6h_A High-affinity branched- 97.3 0.0001 3.4E-09 69.1 3.0 45 217-261 22-68 (257)
127 1e6c_A Shikimate kinase; phosp 97.3 0.00016 5.6E-09 62.5 4.1 30 228-257 4-33 (173)
128 3cmu_A Protein RECA, recombina 97.3 0.00058 2E-08 79.9 9.8 71 222-292 1077-1174(2050)
129 3t61_A Gluconokinase; PSI-biol 97.3 0.00017 5.8E-09 64.4 4.3 31 227-257 19-49 (202)
130 2a5y_B CED-4; apoptosis; HET: 97.3 0.0032 1.1E-07 65.2 14.5 43 196-248 132-174 (549)
131 2pcj_A ABC transporter, lipopr 97.3 8.1E-05 2.8E-09 68.3 2.0 45 217-261 19-65 (224)
132 1knq_A Gluconate kinase; ALFA/ 97.3 0.00018 6E-09 62.6 4.1 28 229-256 11-38 (175)
133 1zp6_A Hypothetical protein AT 97.3 0.00014 4.6E-09 64.2 3.4 30 228-257 11-40 (191)
134 3tif_A Uncharacterized ABC tra 97.3 0.00012 4.2E-09 67.6 3.2 46 217-262 20-67 (235)
135 3lw7_A Adenylate kinase relate 97.3 0.00017 5.9E-09 62.0 4.0 29 228-257 3-31 (179)
136 1b0u_A Histidine permease; ABC 97.3 0.0001 3.4E-09 69.3 2.6 45 217-261 21-67 (262)
137 3b9q_A Chloroplast SRP recepto 97.3 0.00029 1E-08 67.5 6.0 54 198-251 70-125 (302)
138 1qf9_A UMP/CMP kinase, protein 97.2 0.00018 6.2E-09 63.2 4.1 32 226-257 6-37 (194)
139 3cm0_A Adenylate kinase; ATP-b 97.2 0.00015 5.2E-09 63.6 3.5 29 229-257 7-35 (186)
140 3jvv_A Twitching mobility prot 97.2 0.00068 2.3E-08 66.5 8.3 23 229-251 126-148 (356)
141 1gvn_B Zeta; postsegregational 97.2 0.00036 1.2E-08 66.4 6.1 34 226-259 33-66 (287)
142 2zr9_A Protein RECA, recombina 97.2 0.00066 2.3E-08 66.4 8.2 70 222-291 57-153 (349)
143 2olj_A Amino acid ABC transpor 97.2 0.00012 4E-09 68.9 2.6 45 217-261 39-85 (263)
144 2cdn_A Adenylate kinase; phosp 97.2 0.00022 7.4E-09 63.7 4.3 30 228-257 22-51 (201)
145 2pze_A Cystic fibrosis transme 97.2 0.00013 4.6E-09 67.0 2.9 43 217-259 23-67 (229)
146 1sgw_A Putative ABC transporte 97.2 0.00014 4.8E-09 66.2 3.0 44 218-261 25-70 (214)
147 1ji0_A ABC transporter; ATP bi 97.2 0.00012 4E-09 67.9 2.4 45 217-261 21-67 (240)
148 3fvq_A Fe(3+) IONS import ATP- 97.2 0.00013 4.4E-09 71.6 2.8 44 217-260 19-64 (359)
149 1tev_A UMP-CMP kinase; ploop, 97.2 0.00022 7.6E-09 62.7 4.1 29 228-256 5-33 (196)
150 1kht_A Adenylate kinase; phosp 97.2 0.00017 6E-09 63.2 3.4 24 228-251 5-28 (192)
151 1xp8_A RECA protein, recombina 97.2 0.0017 5.9E-08 63.9 10.8 70 222-291 70-166 (366)
152 2qi9_C Vitamin B12 import ATP- 97.2 0.00013 4.4E-09 68.0 2.6 44 217-261 15-60 (249)
153 2pt5_A Shikimate kinase, SK; a 97.2 0.00025 8.6E-09 61.0 4.3 29 229-257 3-31 (168)
154 2bbw_A Adenylate kinase 4, AK4 97.2 0.00022 7.5E-09 65.9 4.1 29 227-255 28-56 (246)
155 3dl0_A Adenylate kinase; phosp 97.2 0.00025 8.6E-09 63.9 4.4 29 229-257 3-31 (216)
156 2ff7_A Alpha-hemolysin translo 97.2 0.00015 5E-09 67.6 2.8 45 217-261 24-70 (247)
157 2ihy_A ABC transporter, ATP-bi 97.2 0.00013 4.4E-09 69.3 2.4 45 217-261 36-82 (279)
158 3gfo_A Cobalt import ATP-bindi 97.2 0.00016 5.4E-09 68.5 3.0 45 217-261 23-69 (275)
159 3io5_A Recombination and repai 97.2 0.0012 4.2E-08 63.4 9.1 68 223-291 26-125 (333)
160 2c95_A Adenylate kinase 1; tra 97.2 0.00022 7.5E-09 63.0 3.7 30 228-257 11-40 (196)
161 3fb4_A Adenylate kinase; psych 97.2 0.00027 9.3E-09 63.6 4.3 29 229-257 3-31 (216)
162 1vpl_A ABC transporter, ATP-bi 97.2 0.00016 5.6E-09 67.6 2.9 45 217-261 30-76 (256)
163 1z47_A CYSA, putative ABC-tran 97.1 0.00021 7.1E-09 70.1 3.7 43 217-259 30-74 (355)
164 1ly1_A Polynucleotide kinase; 97.1 0.00016 5.6E-09 62.8 2.6 29 227-255 3-32 (181)
165 2cbz_A Multidrug resistance-as 97.1 0.00012 4.2E-09 67.7 1.9 43 217-259 20-64 (237)
166 3rlf_A Maltose/maltodextrin im 97.1 0.00019 6.3E-09 71.0 3.1 44 217-260 18-63 (381)
167 2bwj_A Adenylate kinase 5; pho 97.1 0.00025 8.5E-09 62.8 3.7 31 227-257 13-43 (199)
168 3uie_A Adenylyl-sulfate kinase 97.1 0.00029 9.8E-09 63.0 4.1 31 228-258 27-60 (200)
169 2ixe_A Antigen peptide transpo 97.1 0.00019 6.5E-09 67.8 3.0 45 217-261 34-80 (271)
170 2orw_A Thymidine kinase; TMTK, 97.1 0.00016 5.6E-09 64.1 2.5 22 228-249 5-26 (184)
171 3be4_A Adenylate kinase; malar 97.1 0.00028 9.7E-09 63.9 4.1 30 228-257 7-36 (217)
172 1aky_A Adenylate kinase; ATP:A 97.1 0.00028 9.7E-09 63.9 4.1 30 228-257 6-35 (220)
173 2p5t_B PEZT; postsegregational 97.1 0.00044 1.5E-08 64.3 5.5 33 227-259 33-65 (253)
174 2it1_A 362AA long hypothetical 97.1 0.0002 6.9E-09 70.4 3.3 44 217-260 18-63 (362)
175 2yyz_A Sugar ABC transporter, 97.1 0.0002 6.9E-09 70.3 3.2 44 217-260 18-63 (359)
176 1u94_A RECA protein, recombina 97.1 0.00081 2.8E-08 66.0 7.4 70 222-291 59-155 (356)
177 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00019 6.5E-09 70.1 2.8 50 196-254 3-52 (359)
178 1cke_A CK, MSSA, protein (cyti 97.1 0.00031 1.1E-08 63.7 4.1 29 228-256 7-35 (227)
179 1z6g_A Guanylate kinase; struc 97.1 0.00026 8.8E-09 64.4 3.5 33 218-250 13-47 (218)
180 2vli_A Antibiotic resistance p 97.1 0.00022 7.4E-09 62.3 2.9 28 228-255 7-34 (183)
181 2og2_A Putative signal recogni 97.1 0.00057 1.9E-08 67.1 6.1 54 198-251 127-182 (359)
182 1v43_A Sugar-binding transport 97.1 0.00022 7.6E-09 70.4 3.1 44 217-260 26-71 (372)
183 4g1u_C Hemin import ATP-bindin 97.1 0.00012 4.1E-09 69.0 1.1 46 216-261 25-72 (266)
184 2pbr_A DTMP kinase, thymidylat 97.1 0.00044 1.5E-08 60.7 4.7 30 229-258 3-35 (195)
185 1zd8_A GTP:AMP phosphotransfer 97.1 0.00032 1.1E-08 63.9 3.9 31 227-257 8-38 (227)
186 2yz2_A Putative ABC transporte 97.1 0.00025 8.6E-09 66.7 3.2 45 217-261 22-68 (266)
187 1g29_1 MALK, maltose transport 97.1 0.00023 7.7E-09 70.3 2.9 43 217-259 18-62 (372)
188 1ukz_A Uridylate kinase; trans 97.1 0.00038 1.3E-08 62.0 4.2 30 228-257 17-46 (203)
189 1ak2_A Adenylate kinase isoenz 97.0 0.00037 1.3E-08 63.9 4.1 30 228-257 18-47 (233)
190 1jjv_A Dephospho-COA kinase; P 97.0 0.00038 1.3E-08 62.3 4.0 28 229-257 5-32 (206)
191 2pez_A Bifunctional 3'-phospho 97.0 0.00051 1.7E-08 60.0 4.7 30 229-258 8-40 (179)
192 1mv5_A LMRA, multidrug resista 97.0 0.00015 5.2E-09 67.2 1.4 43 217-259 17-61 (243)
193 4a74_A DNA repair and recombin 97.0 0.00087 3E-08 60.5 6.4 29 223-251 22-50 (231)
194 1oxx_K GLCV, glucose, ABC tran 97.0 0.0002 6.9E-09 70.2 2.2 43 217-259 20-64 (353)
195 3umf_A Adenylate kinase; rossm 97.0 0.00042 1.4E-08 63.2 4.1 30 226-255 29-58 (217)
196 2if2_A Dephospho-COA kinase; a 97.0 0.00037 1.3E-08 62.1 3.7 28 229-257 4-31 (204)
197 3d31_A Sulfate/molybdate ABC t 97.0 0.00026 9E-09 69.2 2.8 44 217-260 15-60 (348)
198 1e4v_A Adenylate kinase; trans 97.0 0.00041 1.4E-08 62.6 4.0 29 229-257 3-31 (214)
199 2onk_A Molybdate/tungstate ABC 97.0 0.00052 1.8E-08 63.5 4.5 35 227-261 25-59 (240)
200 2nq2_C Hypothetical ABC transp 97.0 0.00026 9E-09 66.1 2.4 41 217-257 20-62 (253)
201 2jaq_A Deoxyguanosine kinase; 97.0 0.00046 1.6E-08 61.2 3.9 27 229-255 3-29 (205)
202 1zak_A Adenylate kinase; ATP:A 97.0 0.00034 1.2E-08 63.4 3.1 30 227-256 6-35 (222)
203 3c8u_A Fructokinase; YP_612366 97.0 0.00085 2.9E-08 60.3 5.7 32 229-260 25-59 (208)
204 2z0h_A DTMP kinase, thymidylat 97.0 0.00063 2.1E-08 60.0 4.7 30 229-258 3-35 (197)
205 3sr0_A Adenylate kinase; phosp 96.9 0.00052 1.8E-08 62.0 4.1 27 229-255 3-29 (206)
206 2xb4_A Adenylate kinase; ATP-b 96.9 0.0005 1.7E-08 62.6 4.1 29 229-257 3-31 (223)
207 1n0w_A DNA repair protein RAD5 96.9 0.0011 3.8E-08 60.4 6.4 27 223-249 21-47 (243)
208 2plr_A DTMP kinase, probable t 96.9 0.00092 3.2E-08 59.5 5.7 25 229-253 7-31 (213)
209 2bdt_A BH3686; alpha-beta prot 96.9 0.00051 1.7E-08 60.5 3.9 24 229-252 5-28 (189)
210 2jeo_A Uridine-cytidine kinase 96.9 0.00048 1.6E-08 63.7 3.6 36 218-253 15-52 (245)
211 2d2e_A SUFC protein; ABC-ATPas 96.9 0.00025 8.5E-09 66.1 1.7 44 217-260 18-65 (250)
212 3tlx_A Adenylate kinase 2; str 96.9 0.00058 2E-08 63.2 4.1 31 227-257 30-60 (243)
213 3r20_A Cytidylate kinase; stru 96.9 0.00059 2E-08 62.9 4.1 29 228-256 11-39 (233)
214 3tr0_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 61.1 3.6 23 229-251 10-32 (205)
215 1nks_A Adenylate kinase; therm 96.9 0.00036 1.2E-08 61.2 2.5 23 229-251 4-26 (194)
216 1znw_A Guanylate kinase, GMP k 96.9 0.0005 1.7E-08 61.8 3.5 23 229-251 23-45 (207)
217 2v54_A DTMP kinase, thymidylat 96.9 0.00056 1.9E-08 60.7 3.8 31 229-259 7-38 (204)
218 2pt7_A CAG-ALFA; ATPase, prote 96.9 0.00042 1.4E-08 67.3 3.2 62 227-288 172-251 (330)
219 3tui_C Methionine import ATP-b 96.9 0.00051 1.7E-08 67.5 3.7 44 218-261 44-89 (366)
220 2v9p_A Replication protein E1; 96.9 0.00046 1.6E-08 66.2 3.1 37 217-253 115-153 (305)
221 3ake_A Cytidylate kinase; CMP 96.9 0.00074 2.5E-08 60.1 4.3 31 228-258 4-34 (208)
222 2ghi_A Transport protein; mult 96.9 0.00045 1.6E-08 64.7 3.0 43 218-261 36-80 (260)
223 3crm_A TRNA delta(2)-isopenten 96.8 0.0006 2.1E-08 65.8 3.9 32 227-258 6-37 (323)
224 1q3t_A Cytidylate kinase; nucl 96.8 0.0008 2.7E-08 61.7 4.4 33 225-257 13-47 (236)
225 2bbs_A Cystic fibrosis transme 96.8 0.00035 1.2E-08 66.6 2.0 45 215-259 51-97 (290)
226 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00059 2E-08 61.6 3.3 36 223-258 20-58 (235)
227 2zu0_C Probable ATP-dependent 96.8 0.00038 1.3E-08 65.5 2.2 45 217-261 35-83 (267)
228 4e22_A Cytidylate kinase; P-lo 96.8 0.00079 2.7E-08 62.6 4.2 28 229-256 30-57 (252)
229 4gp7_A Metallophosphoesterase; 96.8 0.00056 1.9E-08 59.6 3.0 22 224-245 5-28 (171)
230 2pjz_A Hypothetical protein ST 96.8 0.00052 1.8E-08 64.4 3.0 42 217-260 20-63 (263)
231 3nh6_A ATP-binding cassette SU 96.8 0.00042 1.4E-08 66.6 2.1 45 217-261 69-115 (306)
232 2yhs_A FTSY, cell division pro 96.8 0.0013 4.4E-08 67.0 5.7 31 221-251 286-318 (503)
233 2wwf_A Thymidilate kinase, put 96.8 0.00041 1.4E-08 62.0 1.9 25 229-253 13-37 (212)
234 3a00_A Guanylate kinase, GMP k 96.7 0.00079 2.7E-08 59.4 3.6 24 228-251 3-26 (186)
235 2ehv_A Hypothetical protein PH 96.7 0.00071 2.4E-08 62.0 3.4 26 222-247 26-51 (251)
236 1kgd_A CASK, peripheral plasma 96.7 0.00082 2.8E-08 59.0 3.6 24 228-251 7-30 (180)
237 2r8r_A Sensor protein; KDPD, P 96.7 0.0017 5.7E-08 59.4 5.6 31 229-259 9-42 (228)
238 3gd7_A Fusion complex of cysti 96.7 0.00051 1.7E-08 68.2 2.3 45 217-262 36-82 (390)
239 3upu_A ATP-dependent DNA helic 96.7 0.0017 5.8E-08 65.8 6.0 53 185-250 17-69 (459)
240 4b3f_X DNA-binding protein smu 96.7 0.0029 1E-07 66.9 8.1 65 190-273 184-251 (646)
241 2grj_A Dephospho-COA kinase; T 96.7 0.0011 3.8E-08 59.1 4.1 29 229-257 15-43 (192)
242 4f4c_A Multidrug resistance pr 96.7 0.0021 7.2E-08 73.4 7.4 45 217-261 433-479 (1321)
243 2j41_A Guanylate kinase; GMP, 96.7 0.00079 2.7E-08 59.8 3.2 24 228-251 8-31 (207)
244 3a4m_A L-seryl-tRNA(SEC) kinas 96.7 0.0012 4.1E-08 61.6 4.5 31 228-258 6-39 (260)
245 1rz3_A Hypothetical protein rb 96.7 0.0029 9.9E-08 56.4 6.8 31 229-259 25-58 (201)
246 3kta_A Chromosome segregation 96.7 0.0008 2.7E-08 58.8 3.0 30 223-252 22-52 (182)
247 2qor_A Guanylate kinase; phosp 96.6 0.0011 3.8E-08 59.2 3.9 28 224-251 10-37 (204)
248 1lvg_A Guanylate kinase, GMP k 96.6 0.00097 3.3E-08 59.6 3.4 25 227-251 5-29 (198)
249 3asz_A Uridine kinase; cytidin 96.6 0.0011 3.9E-08 59.2 3.8 24 229-252 9-32 (211)
250 2obl_A ESCN; ATPase, hydrolase 96.6 0.0016 5.4E-08 63.7 5.0 36 224-259 67-104 (347)
251 2z43_A DNA repair and recombin 96.6 0.0026 8.9E-08 61.3 6.5 40 222-261 103-151 (324)
252 2dpy_A FLII, flagellum-specifi 96.6 0.0017 6E-08 65.4 5.4 39 223-261 152-192 (438)
253 1s96_A Guanylate kinase, GMP k 96.6 0.0011 3.6E-08 60.5 3.5 24 229-252 19-42 (219)
254 1vht_A Dephospho-COA kinase; s 96.6 0.0013 4.6E-08 59.2 4.0 29 228-257 6-34 (218)
255 2px0_A Flagellar biosynthesis 96.6 0.0077 2.6E-07 57.4 9.5 34 227-260 106-143 (296)
256 1uf9_A TT1252 protein; P-loop, 96.6 0.0013 4.4E-08 58.2 3.7 29 228-257 10-38 (203)
257 3e70_C DPA, signal recognition 96.6 0.0021 7.3E-08 62.2 5.4 24 228-251 131-154 (328)
258 3thx_B DNA mismatch repair pro 96.5 0.0078 2.7E-07 65.9 10.3 32 218-249 663-696 (918)
259 3tau_A Guanylate kinase, GMP k 96.5 0.0012 4.1E-08 59.3 3.3 24 229-252 11-34 (208)
260 4eaq_A DTMP kinase, thymidylat 96.5 0.0018 6.2E-08 59.3 4.5 24 229-252 29-52 (229)
261 2eyu_A Twitching motility prot 96.5 0.0014 4.7E-08 61.4 3.7 24 229-252 28-51 (261)
262 3ney_A 55 kDa erythrocyte memb 96.5 0.0015 5.2E-08 58.5 3.8 23 229-251 22-44 (197)
263 1vma_A Cell division protein F 96.5 0.0026 9E-08 61.0 5.7 57 200-259 79-140 (306)
264 3lnc_A Guanylate kinase, GMP k 96.5 0.00084 2.9E-08 61.3 2.0 30 222-251 21-53 (231)
265 2i3b_A HCR-ntpase, human cance 96.5 0.0013 4.6E-08 58.4 3.2 22 229-250 4-25 (189)
266 1g5t_A COB(I)alamin adenosyltr 96.5 0.0044 1.5E-07 55.3 6.5 33 227-259 28-64 (196)
267 2h92_A Cytidylate kinase; ross 96.5 0.0021 7.3E-08 57.8 4.5 30 228-257 5-34 (219)
268 1kao_A RAP2A; GTP-binding prot 96.4 0.016 5.6E-07 48.5 9.8 21 229-249 6-26 (167)
269 1nn5_A Similar to deoxythymidy 96.4 0.00073 2.5E-08 60.5 1.2 24 228-251 11-34 (215)
270 1v5w_A DMC1, meiotic recombina 96.4 0.0048 1.6E-07 60.0 7.1 39 223-261 119-166 (343)
271 4f4c_A Multidrug resistance pr 96.4 0.0058 2E-07 69.9 8.8 43 217-259 1094-1138(1321)
272 2qt1_A Nicotinamide riboside k 96.4 0.0014 4.7E-08 58.6 3.0 26 229-254 24-50 (207)
273 3e1s_A Exodeoxyribonuclease V, 96.4 0.002 6.7E-08 67.3 4.4 31 227-257 205-238 (574)
274 2yvu_A Probable adenylyl-sulfa 96.4 0.0016 5.4E-08 57.2 3.2 23 229-251 16-38 (186)
275 2gza_A Type IV secretion syste 96.4 0.00093 3.2E-08 65.6 1.6 27 228-254 177-203 (361)
276 1uj2_A Uridine-cytidine kinase 96.4 0.0017 5.8E-08 60.2 3.3 26 228-253 24-49 (252)
277 3thx_A DNA mismatch repair pro 96.4 0.018 6E-07 63.3 11.7 21 228-248 664-684 (934)
278 3tqc_A Pantothenate kinase; bi 96.3 0.0031 1.1E-07 60.9 5.1 23 229-251 95-117 (321)
279 3kl4_A SRP54, signal recogniti 96.3 0.0054 1.8E-07 61.6 7.0 62 198-260 69-134 (433)
280 1nlf_A Regulatory protein REPA 96.3 0.0017 5.7E-08 61.1 3.0 29 222-250 26-54 (279)
281 2b8t_A Thymidine kinase; deoxy 96.3 0.0098 3.4E-07 54.3 7.9 29 229-257 15-46 (223)
282 3cmw_A Protein RECA, recombina 96.3 0.0059 2E-07 70.7 7.8 70 222-291 30-126 (1706)
283 1cr0_A DNA primase/helicase; R 96.3 0.0021 7.2E-08 60.9 3.4 25 226-250 35-59 (296)
284 2dr3_A UPF0273 protein PH0284; 96.3 0.0019 6.4E-08 58.9 2.9 38 222-259 19-59 (247)
285 3sop_A Neuronal-specific septi 96.3 0.0018 6.3E-08 60.9 2.9 30 229-258 5-34 (270)
286 1wb9_A DNA mismatch repair pro 96.3 0.0057 1.9E-07 66.2 7.1 32 218-249 598-630 (800)
287 1z0j_A RAB-22, RAS-related pro 96.3 0.0075 2.6E-07 51.0 6.6 22 229-250 9-30 (170)
288 2qm8_A GTPase/ATPase; G protei 96.2 0.0031 1.1E-07 61.3 4.5 33 218-250 45-79 (337)
289 2ewv_A Twitching motility prot 96.2 0.0021 7.3E-08 63.3 3.4 24 228-251 138-161 (372)
290 2oap_1 GSPE-2, type II secreti 96.2 0.0026 8.7E-08 65.4 4.0 28 226-253 260-287 (511)
291 3b85_A Phosphate starvation-in 96.2 0.0018 6E-08 58.6 2.4 21 229-249 25-45 (208)
292 1ltq_A Polynucleotide kinase; 96.2 0.0022 7.4E-08 60.8 3.1 29 227-255 3-32 (301)
293 3dm5_A SRP54, signal recogniti 96.2 0.0073 2.5E-07 60.7 6.9 62 198-260 73-137 (443)
294 1zu4_A FTSY; GTPase, signal re 96.2 0.0083 2.8E-07 57.8 7.0 61 200-260 74-142 (320)
295 1ex7_A Guanylate kinase; subst 96.1 0.0039 1.3E-07 55.3 4.3 26 227-252 2-27 (186)
296 1p9r_A General secretion pathw 96.1 0.003 1E-07 63.2 3.9 50 188-252 143-193 (418)
297 3b5x_A Lipid A export ATP-bind 96.1 0.0025 8.4E-08 66.7 3.4 45 217-261 358-404 (582)
298 2v3c_C SRP54, signal recogniti 96.1 0.011 3.8E-07 59.4 8.0 33 227-259 100-135 (432)
299 3a8t_A Adenylate isopentenyltr 96.1 0.0023 7.9E-08 62.0 2.8 32 228-259 42-73 (339)
300 1m7g_A Adenylylsulfate kinase; 96.1 0.0028 9.4E-08 56.9 3.2 31 228-258 27-61 (211)
301 2f6r_A COA synthase, bifunctio 96.1 0.003 1E-07 59.7 3.6 28 229-257 78-105 (281)
302 3aez_A Pantothenate kinase; tr 96.1 0.0032 1.1E-07 60.6 3.7 28 225-252 87-116 (312)
303 3fdi_A Uncharacterized protein 96.1 0.0032 1.1E-07 56.5 3.4 29 228-256 8-36 (201)
304 2ce2_X GTPase HRAS; signaling 96.1 0.023 8E-07 47.4 8.8 21 229-249 6-26 (166)
305 1ek0_A Protein (GTP-binding pr 96.1 0.009 3.1E-07 50.4 6.2 21 229-249 6-26 (170)
306 3b60_A Lipid A export ATP-bind 96.1 0.0024 8.1E-08 66.8 2.9 45 217-261 358-404 (582)
307 2qmh_A HPR kinase/phosphorylas 96.1 0.003 1E-07 56.6 3.1 26 226-251 34-59 (205)
308 3d3q_A TRNA delta(2)-isopenten 96.1 0.003 1E-07 61.3 3.4 30 228-257 9-38 (340)
309 1gtv_A TMK, thymidylate kinase 96.0 0.0016 5.4E-08 58.3 1.2 24 229-252 3-26 (214)
310 1rj9_A FTSY, signal recognitio 96.0 0.0029 9.9E-08 60.6 2.9 26 228-253 104-129 (304)
311 3zvl_A Bifunctional polynucleo 96.0 0.0027 9.2E-08 63.5 2.8 28 228-255 260-287 (416)
312 1u8z_A RAS-related protein RAL 96.0 0.03 1E-06 46.9 9.1 22 228-249 6-27 (168)
313 1odf_A YGR205W, hypothetical 3 96.0 0.0042 1.4E-07 59.0 4.0 25 228-252 33-57 (290)
314 1lw7_A Transcriptional regulat 96.0 0.0032 1.1E-07 61.7 3.3 27 228-254 172-198 (365)
315 3lda_A DNA repair protein RAD5 96.0 0.01 3.4E-07 59.1 6.7 26 222-247 174-199 (400)
316 2npi_A Protein CLP1; CLP1-PCF1 96.0 0.0024 8.1E-08 64.8 2.1 31 221-251 131-163 (460)
317 3tkl_A RAS-related protein RAB 95.9 0.015 5.1E-07 50.6 7.1 22 228-249 18-39 (196)
318 2a9k_A RAS-related protein RAL 95.9 0.035 1.2E-06 47.5 9.5 22 228-249 20-41 (187)
319 4dsu_A GTPase KRAS, isoform 2B 95.9 0.025 8.7E-07 48.6 8.5 21 229-249 7-27 (189)
320 1c1y_A RAS-related protein RAP 95.9 0.029 9.8E-07 47.1 8.6 21 229-249 6-26 (167)
321 2i1q_A DNA repair and recombin 95.9 0.0083 2.8E-07 57.6 5.7 28 222-249 94-121 (322)
322 2fz4_A DNA repair protein RAD2 95.9 0.018 6.2E-07 52.7 7.8 31 228-258 110-140 (237)
323 2yl4_A ATP-binding cassette SU 95.9 0.0024 8.3E-08 66.9 2.0 46 217-262 359-406 (595)
324 2oil_A CATX-8, RAS-related pro 95.9 0.014 4.7E-07 50.9 6.6 22 228-249 27-48 (193)
325 2efe_B Small GTP-binding prote 95.9 0.016 5.6E-07 49.6 7.0 22 228-249 14-35 (181)
326 3qf4_B Uncharacterized ABC tra 95.9 0.003 1E-07 66.2 2.7 46 217-262 370-417 (598)
327 3q72_A GTP-binding protein RAD 95.9 0.015 5.1E-07 49.1 6.7 20 229-248 5-24 (166)
328 4a82_A Cystic fibrosis transme 95.9 0.0021 7.3E-08 67.1 1.5 46 217-262 356-403 (578)
329 3foz_A TRNA delta(2)-isopenten 95.9 0.0043 1.5E-07 59.4 3.4 32 226-257 10-41 (316)
330 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.0039 1.3E-07 53.0 2.8 22 229-250 26-47 (149)
331 2ius_A DNA translocase FTSK; n 95.8 0.049 1.7E-06 55.7 11.4 42 347-390 332-375 (512)
332 2bov_A RAla, RAS-related prote 95.8 0.044 1.5E-06 47.9 9.9 22 228-249 16-37 (206)
333 1tf7_A KAIC; homohexamer, hexa 95.8 0.005 1.7E-07 63.5 4.1 25 227-251 40-66 (525)
334 2zts_A Putative uncharacterize 95.8 0.0079 2.7E-07 54.7 5.1 38 222-259 26-67 (251)
335 1r2q_A RAS-related protein RAB 95.8 0.014 4.7E-07 49.2 6.3 20 229-248 9-28 (170)
336 3gmt_A Adenylate kinase; ssgci 95.8 0.006 2.1E-07 55.9 4.0 28 229-256 11-38 (230)
337 1z0f_A RAB14, member RAS oncog 95.8 0.022 7.5E-07 48.5 7.4 23 228-250 17-39 (179)
338 1sq5_A Pantothenate kinase; P- 95.8 0.0042 1.4E-07 59.5 2.9 23 229-251 83-105 (308)
339 2f1r_A Molybdopterin-guanine d 95.7 0.0028 9.5E-08 55.4 1.4 34 228-261 4-40 (171)
340 3bc1_A RAS-related protein RAB 95.7 0.033 1.1E-06 48.0 8.3 22 228-249 13-34 (195)
341 3qf4_A ABC transporter, ATP-bi 95.7 0.0035 1.2E-07 65.6 2.2 46 217-262 358-405 (587)
342 1np6_A Molybdopterin-guanine d 95.7 0.0061 2.1E-07 53.4 3.4 34 226-259 6-42 (174)
343 1c9k_A COBU, adenosylcobinamid 95.7 0.011 3.7E-07 52.1 5.0 33 229-262 2-34 (180)
344 2o8b_B DNA mismatch repair pro 95.7 0.0098 3.3E-07 66.0 5.7 20 227-246 790-809 (1022)
345 1u0l_A Probable GTPase ENGC; p 95.6 0.0043 1.5E-07 59.2 2.5 31 229-259 172-202 (301)
346 2f9l_A RAB11B, member RAS onco 95.6 0.0059 2E-07 53.9 3.2 22 229-250 8-29 (199)
347 3ozx_A RNAse L inhibitor; ATP 95.6 0.0048 1.7E-07 63.8 2.9 40 216-255 12-54 (538)
348 3t1o_A Gliding protein MGLA; G 95.6 0.049 1.7E-06 47.0 9.1 22 229-250 17-38 (198)
349 2ffh_A Protein (FFH); SRP54, s 95.6 0.02 6.8E-07 57.3 7.2 59 199-259 73-134 (425)
350 1qhl_A Protein (cell division 95.6 0.0023 8E-08 58.6 0.3 26 229-254 30-55 (227)
351 1r8s_A ADP-ribosylation factor 95.6 0.024 8.3E-07 47.6 6.8 21 229-249 3-23 (164)
352 1oix_A RAS-related protein RAB 95.6 0.0055 1.9E-07 53.8 2.7 22 229-250 32-53 (191)
353 1x3s_A RAS-related protein RAB 95.6 0.044 1.5E-06 47.4 8.6 22 228-249 17-38 (195)
354 3exa_A TRNA delta(2)-isopenten 95.5 0.006 2.1E-07 58.5 3.0 29 228-256 5-33 (322)
355 1x6v_B Bifunctional 3'-phospho 95.5 0.0084 2.9E-07 62.9 4.3 31 229-259 55-88 (630)
356 1j8m_F SRP54, signal recogniti 95.5 0.017 5.8E-07 55.0 6.1 61 198-260 70-135 (297)
357 1vt4_I APAF-1 related killer D 95.5 0.053 1.8E-06 60.0 10.6 55 195-261 131-191 (1221)
358 2erx_A GTP-binding protein DI- 95.5 0.019 6.4E-07 48.5 5.8 20 229-248 6-25 (172)
359 3con_A GTPase NRAS; structural 95.5 0.029 1E-06 48.5 7.2 21 229-249 24-44 (190)
360 1w4r_A Thymidine kinase; type 95.5 0.02 7E-07 50.9 6.1 30 229-258 23-55 (195)
361 2iut_A DNA translocase FTSK; n 95.5 0.096 3.3E-06 54.2 11.9 41 347-389 378-420 (574)
362 2j37_W Signal recognition part 95.5 0.021 7.2E-07 58.4 6.9 59 199-259 74-137 (504)
363 1yqt_A RNAse L inhibitor; ATP- 95.5 0.0066 2.3E-07 62.8 3.2 29 225-253 44-74 (538)
364 1xjc_A MOBB protein homolog; s 95.4 0.014 4.8E-07 50.8 4.8 32 228-259 6-40 (169)
365 1g41_A Heat shock protein HSLU 95.4 0.018 6E-07 58.0 6.2 95 269-389 242-346 (444)
366 3tqf_A HPR(Ser) kinase; transf 95.4 0.0062 2.1E-07 53.3 2.5 24 226-249 16-39 (181)
367 2rcn_A Probable GTPase ENGC; Y 95.4 0.0052 1.8E-07 60.2 2.2 32 228-259 217-249 (358)
368 2f7s_A C25KG, RAS-related prot 95.4 0.047 1.6E-06 48.5 8.4 21 229-249 28-48 (217)
369 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.0059 2E-07 59.9 2.5 28 223-250 19-47 (365)
370 2www_A Methylmalonic aciduria 95.4 0.021 7.3E-07 55.6 6.5 22 229-250 77-98 (349)
371 3kkq_A RAS-related protein M-R 95.4 0.038 1.3E-06 47.4 7.5 21 229-249 21-41 (183)
372 3hdt_A Putative kinase; struct 95.4 0.0078 2.7E-07 54.9 3.1 29 228-256 16-44 (223)
373 3dz8_A RAS-related protein RAB 95.4 0.02 6.7E-07 49.9 5.7 22 229-250 26-47 (191)
374 2qag_B Septin-6, protein NEDD5 95.4 0.0054 1.9E-07 61.4 2.2 22 229-250 45-66 (427)
375 3qks_A DNA double-strand break 95.3 0.0075 2.6E-07 54.0 2.8 24 229-252 26-49 (203)
376 1ls1_A Signal recognition part 95.3 0.018 6.1E-07 54.7 5.6 58 200-259 74-134 (295)
377 2atv_A RERG, RAS-like estrogen 95.3 0.06 2.1E-06 46.9 8.7 22 228-249 30-51 (196)
378 2ged_A SR-beta, signal recogni 95.3 0.017 5.7E-07 50.3 5.0 24 227-250 49-72 (193)
379 4edh_A DTMP kinase, thymidylat 95.3 0.0097 3.3E-07 53.8 3.4 29 229-257 9-40 (213)
380 1zbd_A Rabphilin-3A; G protein 95.3 0.034 1.2E-06 48.8 6.9 22 228-249 10-31 (203)
381 2h57_A ADP-ribosylation factor 95.3 0.023 7.8E-07 49.4 5.7 22 229-250 24-45 (190)
382 2wji_A Ferrous iron transport 95.3 0.0083 2.8E-07 51.2 2.7 21 229-249 6-26 (165)
383 2c9o_A RUVB-like 1; hexameric 95.2 0.03 1E-06 56.5 7.2 66 329-402 311-389 (456)
384 1tq4_A IIGP1, interferon-induc 95.2 0.015 5.2E-07 58.0 4.8 24 229-252 72-95 (413)
385 2iw3_A Elongation factor 3A; a 95.2 0.0057 1.9E-07 67.3 1.7 44 217-260 688-733 (986)
386 1sky_E F1-ATPase, F1-ATP synth 95.2 0.023 7.7E-07 57.5 5.9 22 229-250 154-175 (473)
387 2xxa_A Signal recognition part 95.1 0.03 1E-06 56.2 6.8 60 200-261 74-139 (433)
388 1a7j_A Phosphoribulokinase; tr 95.1 0.0069 2.4E-07 57.5 2.0 35 229-263 8-45 (290)
389 1pui_A ENGB, probable GTP-bind 95.1 0.0045 1.5E-07 54.9 0.6 27 224-250 22-50 (210)
390 2hup_A RAS-related protein RAB 95.1 0.04 1.4E-06 48.5 6.9 21 229-249 32-52 (201)
391 2axn_A 6-phosphofructo-2-kinas 95.1 0.011 3.9E-07 60.7 3.7 31 228-258 37-70 (520)
392 3euj_A Chromosome partition pr 95.1 0.011 3.9E-07 60.0 3.6 29 227-255 30-58 (483)
393 2dyk_A GTP-binding protein; GT 95.1 0.012 4E-07 49.4 3.1 21 229-249 4-24 (161)
394 3ice_A Transcription terminati 95.1 0.039 1.3E-06 54.4 7.1 27 224-250 170-198 (422)
395 3v9p_A DTMP kinase, thymidylat 95.1 0.016 5.6E-07 52.9 4.2 29 229-257 28-63 (227)
396 1z2a_A RAS-related protein RAB 95.0 0.012 4.2E-07 49.5 3.1 22 228-249 7-28 (168)
397 3eph_A TRNA isopentenyltransfe 95.0 0.0098 3.4E-07 59.0 2.8 29 228-256 4-32 (409)
398 2zej_A Dardarin, leucine-rich 95.0 0.0089 3E-07 52.0 2.2 21 229-249 5-25 (184)
399 3ozx_A RNAse L inhibitor; ATP 95.0 0.0075 2.6E-07 62.3 1.9 31 225-255 291-323 (538)
400 2o5v_A DNA replication and rep 95.0 0.0093 3.2E-07 58.4 2.5 32 218-249 17-49 (359)
401 3j16_B RLI1P; ribosome recycli 95.0 0.012 4.1E-07 61.7 3.4 27 229-255 106-132 (608)
402 1yqt_A RNAse L inhibitor; ATP- 95.0 0.01 3.5E-07 61.3 2.8 28 226-253 310-339 (538)
403 2yv5_A YJEQ protein; hydrolase 94.9 0.0079 2.7E-07 57.4 1.8 30 229-259 168-197 (302)
404 2p5s_A RAS and EF-hand domain 94.9 0.036 1.2E-06 48.6 6.0 22 228-249 30-51 (199)
405 2il1_A RAB12; G-protein, GDP, 94.9 0.039 1.3E-06 48.1 6.2 21 229-249 29-49 (192)
406 3j16_B RLI1P; ribosome recycli 94.9 0.0093 3.2E-07 62.5 2.4 35 219-253 364-405 (608)
407 1nrj_B SR-beta, signal recogni 94.9 0.013 4.5E-07 52.2 3.1 23 228-250 14-36 (218)
408 2wjg_A FEOB, ferrous iron tran 94.9 0.013 4.3E-07 50.8 2.9 21 229-249 10-30 (188)
409 3tmk_A Thymidylate kinase; pho 94.9 0.022 7.4E-07 51.7 4.6 27 229-255 8-34 (216)
410 3bh0_A DNAB-like replicative h 94.9 0.015 5.2E-07 55.7 3.8 38 222-259 64-104 (315)
411 2vp4_A Deoxynucleoside kinase; 94.9 0.014 4.8E-07 53.1 3.4 30 226-256 18-49 (230)
412 4aby_A DNA repair protein RECN 94.9 0.0042 1.4E-07 61.7 -0.2 35 217-251 50-85 (415)
413 2iw3_A Elongation factor 3A; a 94.9 0.0074 2.5E-07 66.4 1.6 32 217-248 450-483 (986)
414 3bk7_A ABC transporter ATP-bin 94.9 0.011 3.8E-07 62.0 2.8 29 225-253 379-409 (607)
415 2nzj_A GTP-binding protein REM 94.8 0.013 4.3E-07 49.9 2.7 21 229-249 7-27 (175)
416 1t9h_A YLOQ, probable GTPase E 94.8 0.0038 1.3E-07 59.9 -0.7 31 229-259 176-206 (307)
417 3bk7_A ABC transporter ATP-bin 94.8 0.011 3.8E-07 62.0 2.7 30 224-253 113-144 (607)
418 2p67_A LAO/AO transport system 94.8 0.034 1.2E-06 53.9 5.9 22 229-250 59-80 (341)
419 1fzq_A ADP-ribosylation factor 94.8 0.028 9.6E-07 48.6 4.9 21 229-249 19-39 (181)
420 1wms_A RAB-9, RAB9, RAS-relate 94.8 0.015 5.3E-07 49.5 3.1 22 228-249 9-30 (177)
421 2gk6_A Regulator of nonsense t 94.8 0.013 4.5E-07 61.6 3.2 23 228-250 197-219 (624)
422 1z08_A RAS-related protein RAB 94.7 0.016 5.5E-07 49.0 3.1 22 228-249 8-29 (170)
423 1p5z_B DCK, deoxycytidine kina 94.7 0.0081 2.8E-07 55.8 1.3 23 229-251 27-49 (263)
424 1g16_A RAS-related protein SEC 94.7 0.015 5E-07 49.1 2.8 21 229-249 6-26 (170)
425 1f6b_A SAR1; gtpases, N-termin 94.7 0.011 3.8E-07 52.2 2.0 20 229-248 28-47 (198)
426 2wjy_A Regulator of nonsense t 94.7 0.016 5.3E-07 62.8 3.6 23 228-250 373-395 (800)
427 1ky3_A GTP-binding protein YPT 94.7 0.017 5.8E-07 49.3 3.1 22 228-249 10-31 (182)
428 1m8p_A Sulfate adenylyltransfe 94.7 0.019 6.5E-07 59.7 4.0 31 229-259 399-433 (573)
429 1m2o_B GTP-binding protein SAR 94.7 0.015 5.3E-07 50.8 2.8 20 229-248 26-45 (190)
430 3q85_A GTP-binding protein REM 94.6 0.016 5.3E-07 49.1 2.7 20 229-248 5-24 (169)
431 2gf0_A GTP-binding protein DI- 94.6 0.039 1.3E-06 48.0 5.5 20 229-248 11-30 (199)
432 3p32_A Probable GTPase RV1496/ 94.6 0.029 9.8E-07 54.7 5.0 31 229-259 82-115 (355)
433 2gj8_A MNME, tRNA modification 94.6 0.015 5E-07 50.1 2.5 21 229-249 7-27 (172)
434 1tf7_A KAIC; homohexamer, hexa 94.6 0.015 5E-07 59.9 3.0 28 223-250 278-305 (525)
435 3qkt_A DNA double-strand break 94.6 0.013 4.6E-07 56.7 2.5 27 224-250 20-47 (339)
436 2hxs_A RAB-26, RAS-related pro 94.6 0.018 6.2E-07 49.1 3.0 21 229-249 9-29 (178)
437 2ocp_A DGK, deoxyguanosine kin 94.6 0.017 5.9E-07 52.8 3.0 23 229-251 5-27 (241)
438 2r6a_A DNAB helicase, replicat 94.6 0.02 6.8E-07 57.8 3.8 37 223-259 200-240 (454)
439 3cr8_A Sulfate adenylyltranfer 94.5 0.011 3.9E-07 61.1 1.9 23 229-251 372-394 (552)
440 2fh5_B SR-beta, signal recogni 94.5 0.042 1.4E-06 48.6 5.4 22 228-249 9-30 (214)
441 4i1u_A Dephospho-COA kinase; s 94.5 0.027 9.3E-07 50.8 4.0 31 228-259 11-41 (210)
442 1upt_A ARL1, ADP-ribosylation 94.5 0.021 7E-07 48.3 3.1 21 228-248 9-29 (171)
443 3clv_A RAB5 protein, putative; 94.4 0.02 7E-07 49.7 3.1 21 229-249 10-30 (208)
444 2lkc_A Translation initiation 94.4 0.02 6.8E-07 48.8 2.9 21 228-248 10-30 (178)
445 2y8e_A RAB-protein 6, GH09086P 94.4 0.019 6.4E-07 48.9 2.8 21 229-249 17-37 (179)
446 3lv8_A DTMP kinase, thymidylat 94.3 0.017 5.7E-07 53.2 2.3 23 229-251 30-52 (236)
447 1bif_A 6-phosphofructo-2-kinas 94.3 0.012 4.2E-07 59.6 1.5 24 228-251 41-64 (469)
448 3tw8_B RAS-related protein RAB 94.3 0.016 5.4E-07 49.5 2.0 20 229-248 12-31 (181)
449 2fn4_A P23, RAS-related protei 94.2 0.021 7.3E-07 48.7 2.7 22 228-249 11-32 (181)
450 3k53_A Ferrous iron transport 94.2 0.019 6.4E-07 53.6 2.5 22 228-249 5-26 (271)
451 1svi_A GTP-binding protein YSX 94.2 0.019 6.5E-07 50.0 2.4 22 228-249 25-46 (195)
452 2bme_A RAB4A, RAS-related prot 94.2 0.022 7.5E-07 49.0 2.8 22 228-249 12-33 (186)
453 1w36_D RECD, exodeoxyribonucle 94.2 0.022 7.6E-07 59.7 3.2 24 227-250 165-188 (608)
454 2gf9_A RAS-related protein RAB 94.2 0.026 8.8E-07 49.0 3.1 22 228-249 24-45 (189)
455 2g6b_A RAS-related protein RAB 94.2 0.026 8.9E-07 48.2 3.1 22 228-249 12-33 (180)
456 1m7b_A RND3/RHOE small GTP-bin 94.2 0.023 7.8E-07 49.2 2.8 21 229-249 10-30 (184)
457 4dkx_A RAS-related protein RAB 94.2 0.066 2.2E-06 48.3 5.9 20 229-248 16-35 (216)
458 2cxx_A Probable GTP-binding pr 94.1 0.019 6.6E-07 49.5 2.3 21 229-249 4-24 (190)
459 2qnr_A Septin-2, protein NEDD5 94.1 0.015 5E-07 55.5 1.6 21 229-249 21-41 (301)
460 1w1w_A Structural maintenance 94.1 0.03 1E-06 55.9 3.8 26 228-253 28-53 (430)
461 1mh1_A RAC1; GTP-binding, GTPa 94.0 0.028 9.7E-07 48.2 3.1 21 229-249 8-28 (186)
462 3g5u_A MCG1178, multidrug resi 94.0 0.019 6.7E-07 65.4 2.6 45 217-261 405-451 (1284)
463 3lxx_A GTPase IMAP family memb 94.0 0.025 8.6E-07 51.5 2.9 23 228-250 31-53 (239)
464 1e69_A Chromosome segregation 94.0 0.018 6E-07 55.4 1.9 28 223-250 20-48 (322)
465 4a1f_A DNAB helicase, replicat 94.0 0.045 1.5E-06 53.1 4.7 37 223-259 43-82 (338)
466 2q6t_A DNAB replication FORK h 94.0 0.028 9.6E-07 56.5 3.4 37 223-259 197-237 (444)
467 2wsm_A Hydrogenase expression/ 93.9 0.026 9E-07 50.3 2.8 24 228-251 32-55 (221)
468 3bwd_D RAC-like GTP-binding pr 93.9 0.031 1E-06 47.8 3.1 22 228-249 10-31 (182)
469 2qe7_A ATP synthase subunit al 93.9 0.14 4.8E-06 52.0 8.3 34 224-257 158-194 (502)
470 3pqc_A Probable GTP-binding pr 93.9 0.024 8.3E-07 49.0 2.4 22 228-249 25-46 (195)
471 1zd9_A ADP-ribosylation factor 93.9 0.031 1.1E-06 48.5 3.1 21 229-249 25-45 (188)
472 1z06_A RAS-related protein RAB 93.9 0.031 1.1E-06 48.5 3.1 21 229-249 23-43 (189)
473 3ihw_A Centg3; RAS, centaurin, 93.9 0.031 1.1E-06 48.6 3.1 21 229-249 23-43 (184)
474 2a5j_A RAS-related protein RAB 93.9 0.032 1.1E-06 48.6 3.2 21 229-249 24-44 (191)
475 3szr_A Interferon-induced GTP- 93.9 0.036 1.2E-06 58.1 4.1 23 229-251 48-70 (608)
476 3c5c_A RAS-like protein 12; GD 93.9 0.031 1.1E-06 48.6 3.1 21 229-249 24-44 (187)
477 3g5u_A MCG1178, multidrug resi 93.9 0.032 1.1E-06 63.6 3.9 46 217-262 1048-1095(1284)
478 1vg8_A RAS-related protein RAB 93.9 0.031 1.1E-06 49.0 3.1 23 228-250 10-32 (207)
479 2fg5_A RAB-22B, RAS-related pr 93.8 0.028 9.5E-07 49.0 2.7 21 229-249 26-46 (192)
480 3ld9_A DTMP kinase, thymidylat 93.8 0.032 1.1E-06 50.8 3.2 24 229-252 24-47 (223)
481 2iwr_A Centaurin gamma 1; ANK 93.8 0.024 8.3E-07 48.4 2.2 21 229-249 10-30 (178)
482 3cph_A RAS-related protein SEC 93.8 0.033 1.1E-06 49.1 3.1 22 228-249 22-43 (213)
483 4tmk_A Protein (thymidylate ki 93.8 0.03 1E-06 50.6 2.8 22 229-250 6-27 (213)
484 1g8f_A Sulfate adenylyltransfe 93.8 0.03 1E-06 57.3 3.2 24 229-252 398-421 (511)
485 3reg_A RHO-like small GTPase; 93.8 0.034 1.2E-06 48.4 3.1 21 229-249 26-46 (194)
486 3t34_A Dynamin-related protein 93.8 0.24 8.2E-06 48.0 9.5 21 228-248 36-56 (360)
487 3t5g_A GTP-binding protein RHE 93.7 0.031 1E-06 47.9 2.8 21 228-248 8-28 (181)
488 1ksh_A ARF-like protein 2; sma 93.7 0.027 9.2E-07 48.6 2.4 22 228-249 20-41 (186)
489 1fx0_A ATP synthase alpha chai 93.7 0.12 4E-06 52.6 7.2 49 224-272 159-210 (507)
490 2bcg_Y Protein YP2, GTP-bindin 93.7 0.032 1.1E-06 49.2 2.8 22 228-249 10-31 (206)
491 3oes_A GTPase rhebl1; small GT 93.6 0.032 1.1E-06 49.0 2.8 22 229-250 27-48 (201)
492 1yrb_A ATP(GTP)binding protein 93.6 0.061 2.1E-06 49.3 4.8 31 229-259 17-49 (262)
493 2xzl_A ATP-dependent helicase 93.6 0.032 1.1E-06 60.4 3.2 23 228-250 377-399 (802)
494 2qtf_A Protein HFLX, GTP-bindi 93.6 0.063 2.1E-06 52.6 5.0 22 229-250 182-203 (364)
495 3auy_A DNA double-strand break 93.6 0.024 8.1E-07 55.6 1.9 26 223-248 21-47 (371)
496 2qag_C Septin-7; cell cycle, c 93.5 0.028 9.6E-07 56.1 2.4 23 229-251 34-56 (418)
497 1gwn_A RHO-related GTP-binding 93.4 0.036 1.2E-06 49.2 2.8 21 229-249 31-51 (205)
498 3bgw_A DNAB-like replicative h 93.4 0.055 1.9E-06 54.5 4.3 32 228-259 199-233 (444)
499 2fu5_C RAS-related protein RAB 93.4 0.024 8.2E-07 48.7 1.5 22 228-249 10-31 (183)
500 3b1v_A Ferrous iron uptake tra 93.4 0.035 1.2E-06 52.0 2.7 21 229-249 6-26 (272)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-41 Score=333.20 Aligned_cols=212 Identities=25% Similarity=0.346 Sum_probs=177.6
Q ss_pred eeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 183 AILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 183 ~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
...+.|. +|++++|.+++|++|.+.+..++.+|+.|.++|+++++|+|||||||||||+||+|+|++++.+++.++.+.
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 3345565 999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cC------ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 262 VE------GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 262 ~~------~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+. ++..++.+|..+ .+||||||||||+++..+.....+.. .....++++|
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~----------------------~~~~~~l~~l 275 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGD----------------------SEVQRTMLEL 275 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGG----------------------GHHHHHHHHH
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCc----------------------HHHHHHHHHH
Confidence 73 467789999766 57999999999999863322211100 1235788999
Q ss_pred HHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CC
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KV 412 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~ 412 (419)
|+.|||+.+. ..+++|+|||+|+.|||||+||||||.+|++++|+.++|++|++.|+......-..+++.+.+.+ ++
T Consensus 276 L~~lDg~~~~--~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~ 353 (405)
T 4b4t_J 276 LNQLDGFETS--KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGC 353 (405)
T ss_dssp HHHHHTTTCC--CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSC
T ss_pred HHhhhccCCC--CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCC
Confidence 9999999654 45899999999999999999999999999999999999999999999875433222455555544 59
Q ss_pred Cccccc
Q 040638 413 TPAEVA 418 (419)
Q Consensus 413 tpa~v~ 418 (419)
|+|||.
T Consensus 354 SGADi~ 359 (405)
T 4b4t_J 354 SGADVK 359 (405)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 999985
No 2
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=330.32 Aligned_cols=207 Identities=23% Similarity=0.320 Sum_probs=174.1
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE---- 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~---- 263 (419)
..+|++++|.+++|++|.+.+..|+.+++.|.++|++|++|+|||||||||||+||+|+|++++.+++.++.+.+.
T Consensus 178 ~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~v 257 (437)
T 4b4t_I 178 TESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYL 257 (437)
T ss_dssp CCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSS
T ss_pred CCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccC
Confidence 3499999999999999999999999999999999999999999999999999999999999999999999998773
Q ss_pred --ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 264 --GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 264 --~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
++..++.+|..+ .+||||||||||+++..+........ .....++++||+.||+
T Consensus 258 Gesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~----------------------~~~~~~l~~LL~~lDg 315 (437)
T 4b4t_I 258 GDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGE----------------------REIQRTMLELLNQLDG 315 (437)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSC----------------------CHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCcc----------------------HHHHHHHHHHHHHhhC
Confidence 456788888665 57999999999999874332211110 1236788999999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
..+. +++++|+|||+|+.|||||+||||||++|+|++|+.++|++|++.|+......-.-+++.+.+.+ ++|+|||.
T Consensus 316 ~~~~--~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~ 393 (437)
T 4b4t_I 316 FDDR--GDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQ 393 (437)
T ss_dssp CCCS--SSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHH
T ss_pred cCCC--CCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH
Confidence 8553 56999999999999999999999999999999999999999999999865433222355555543 59999985
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-39 Score=329.54 Aligned_cols=210 Identities=23% Similarity=0.334 Sum_probs=175.7
Q ss_pred ccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC
Q 040638 185 LDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE 263 (419)
Q Consensus 185 ~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~ 263 (419)
.+.|. +|++++|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||+||+|+|++++.+++.++++.+.
T Consensus 173 ~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 173 FEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIV 252 (437)
T ss_dssp EESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTC
T ss_pred ccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhc
Confidence 34555 99999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ------ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 264 ------GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 264 ------~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
+...++.+|..+ .+||||||||||+++..+..... ... .....++++||+
T Consensus 253 sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~--~~~--------------------~~~~~~l~~lL~ 310 (437)
T 4b4t_L 253 DKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGT--SAD--------------------REIQRTLMELLT 310 (437)
T ss_dssp CSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCC--SST--------------------THHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCC--Ccc--------------------hHHHHHHHHHHH
Confidence 356788888665 57999999999999873322111 100 123678899999
Q ss_pred HhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCc
Q 040638 336 FTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTP 414 (419)
Q Consensus 336 ~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tp 414 (419)
.|||+.+. +.++||+|||+|+.|||||+||||||.+|+||+|+.++|.+|++.|+....+.-..+++.+.+.+ ++|+
T Consensus 311 ~lDg~~~~--~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sG 388 (437)
T 4b4t_L 311 QMDGFDNL--GQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNG 388 (437)
T ss_dssp HHHSSSCT--TSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCH
T ss_pred HhhcccCC--CCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCH
Confidence 99999754 45899999999999999999999999999999999999999999999765432223455555544 5999
Q ss_pred cccc
Q 040638 415 AEVA 418 (419)
Q Consensus 415 a~v~ 418 (419)
|||.
T Consensus 389 ADi~ 392 (437)
T 4b4t_L 389 ADIR 392 (437)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 4
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.9e-40 Score=329.63 Aligned_cols=209 Identities=23% Similarity=0.297 Sum_probs=173.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-- 263 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-- 263 (419)
.++.+|++++|.+++|++|.+.+..|+.+++.|.++|+++++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~ 254 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM 254 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc
Confidence 344599999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 264 ----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 264 ----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
++..++.+|..+ .+||||||||||+++..+.....+. . .....++++||+.|
T Consensus 255 ~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~--~--------------------~~~~~~~~~lL~~l 312 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSG--D--------------------REVQRTMLELLNQL 312 (434)
T ss_dssp CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGT--T--------------------HHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCC--c--------------------hHHHHHHHHHHHHh
Confidence 456788888655 5799999999999976433222110 0 12367889999999
Q ss_pred cCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccc
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAE 416 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~ 416 (419)
||+.+. +.++||+|||+|+.|||||+||||||.+|++++|+.++|.+|++.|+......-.-+++.+.+.+ ++|+||
T Consensus 313 dg~~~~--~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGAD 390 (434)
T 4b4t_M 313 DGFSSD--DRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQ 390 (434)
T ss_dssp TTSCSS--CSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHH
T ss_pred hccCCC--CCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHH
Confidence 999654 45899999999999999999999999999999999999999999998754322111344444433 599999
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 391 i~ 392 (434)
T 4b4t_M 391 LK 392 (434)
T ss_dssp HH
T ss_pred HH
Confidence 85
No 5
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-40 Score=329.72 Aligned_cols=209 Identities=26% Similarity=0.376 Sum_probs=174.3
Q ss_pred cCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-
Q 040638 186 DHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE- 263 (419)
Q Consensus 186 ~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~- 263 (419)
+.|. +|++++|.+++|++|.+.+..|+.+++.|.++|++|++|+|||||||||||++|+|+|++++.+++.++++.+.
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 4454 99999999999999999999999999999999999999999999999999999999999999999999998863
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 -----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 -----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
+...++.+|..+ .+||||||||+|+++..+........ .....++++||+.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~----------------------~~~~r~l~~lL~~ 302 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSD----------------------REVQRILIELLTQ 302 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCC----------------------CHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCC----------------------hHHHHHHHHHHHH
Confidence 456788998765 57999999999998764322211110 1236788999999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeC-CCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCc
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS-YCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTP 414 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~-~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tp 414 (419)
|||+.+. .++++|+|||+|+.|||||+||||||++|++| +|+.++|+.|++.++......-.-+++.+.+.+ ++|+
T Consensus 303 ldg~~~~--~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sg 380 (428)
T 4b4t_K 303 MDGFDQS--TNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSG 380 (428)
T ss_dssp HHHSCSS--CSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCH
T ss_pred hhCCCCC--CCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCH
Confidence 9999765 35999999999999999999999999999996 899999999999999764322222345555543 5999
Q ss_pred cccc
Q 040638 415 AEVA 418 (419)
Q Consensus 415 a~v~ 418 (419)
|||+
T Consensus 381 adi~ 384 (428)
T 4b4t_K 381 AVIA 384 (428)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 6
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-39 Score=325.01 Aligned_cols=209 Identities=23% Similarity=0.286 Sum_probs=174.6
Q ss_pred cCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-
Q 040638 186 DHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE- 263 (419)
Q Consensus 186 ~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~- 263 (419)
+.|. +|++++|.+++|++|.+.+..++.+++.|.++|+++++|+|||||||||||+||+|+|++++.+++.++++.+.
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 4555 99999999999999999999999999999999999999999999999999999999999999999999998873
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 -----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 -----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
++..++.+|..+ .+||||||||+|.++..+.....+.. .....+++.+|+.
T Consensus 282 k~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~----------------------~~~~~~l~~lL~~ 339 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGD----------------------NEVQRTMLELITQ 339 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGG----------------------GHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCcc----------------------HHHHHHHHHHHHH
Confidence 456788888765 57999999999999874332211100 1236788899999
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCcc
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPA 415 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa 415 (419)
||+..+. +.+++|+|||+|+.|||||+||||||++|+|++|+.++|++|++.|+......-.-+++.+.+.+ ++|+|
T Consensus 340 lDg~~~~--~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGA 417 (467)
T 4b4t_H 340 LDGFDPR--GNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGA 417 (467)
T ss_dssp HHSSCCT--TTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHH
T ss_pred hhccCCC--CcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHH
Confidence 9998654 56999999999999999999999999999999999999999999999875433222344444433 59999
Q ss_pred ccc
Q 040638 416 EVA 418 (419)
Q Consensus 416 ~v~ 418 (419)
||.
T Consensus 418 DI~ 420 (467)
T 4b4t_H 418 ELR 420 (467)
T ss_dssp HHH
T ss_pred HHH
Confidence 985
No 7
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=7e-35 Score=313.44 Aligned_cols=219 Identities=20% Similarity=0.306 Sum_probs=161.1
Q ss_pred CCCCceeeeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 176 NHDTWQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 176 ~~~~w~~~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
.+...+....+.|. +|++++|.+++|++|.+.+..++.+++.|.+.|..+++|+|||||||||||++++|+|++++.++
T Consensus 460 ~ps~~r~~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f 539 (806)
T 3cf2_A 460 NPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp SCCCCCCCCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEE
T ss_pred CCcccccccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCce
Confidence 34444555555555 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccc------CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 255 YDLELSSV------EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 255 ~~l~l~~~------~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
+.+..+.+ .++..++++|..+ ..||||||||||+++..+........ ...
T Consensus 540 ~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~----------------------~~~ 597 (806)
T 3cf2_A 540 ISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGG----------------------GAA 597 (806)
T ss_dssp EECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC------------------------------------
T ss_pred EEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCc----------------------hHH
Confidence 99988765 4678899999876 46999999999999874432211100 012
Q ss_pred HHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHH
Q 040638 327 ILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEEL 406 (419)
Q Consensus 327 ~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l 406 (419)
...+++||..|||+.+. ..+++|+|||+|+.|||||+||||||.+|++++|+.++|++|++.++......-.-+++.+
T Consensus 598 ~rv~~~lL~~mdg~~~~--~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~l 675 (806)
T 3cf2_A 598 DRVINQILTEMDGMSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFL 675 (806)
T ss_dssp CHHHHHHHHHHHSSCSS--SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC------
T ss_pred HHHHHHHHHHHhCCCCC--CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHH
Confidence 46788999999999654 4589999999999999999999999999999999999999999999987544333345566
Q ss_pred HhcC-CCCccccc
Q 040638 407 IEQT-KVTPAEVA 418 (419)
Q Consensus 407 ~~~~-~~tpa~v~ 418 (419)
.+.+ ++|+|||.
T Consensus 676 a~~t~g~SGadi~ 688 (806)
T 3cf2_A 676 AKMTNGFSGADLT 688 (806)
T ss_dssp ----------CHH
T ss_pred HHhCCCCCHHHHH
Confidence 5554 59999985
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.6e-33 Score=298.68 Aligned_cols=203 Identities=22% Similarity=0.299 Sum_probs=172.5
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc------
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV------ 262 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~------ 262 (419)
.+|++++|.+++|++|.+.+..++.+++.|.++|..+++|+|||||||||||+|++++|++++.+++.++++++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~g 280 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAG 280 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTT
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccch
Confidence 38999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 263 EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 263 ~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
.++..++.+|..+ .+||||||||||.++..++... .. .....+++|+..||++
T Consensus 281 ese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~--~~-----------------------~~~riv~~LL~~mdg~ 335 (806)
T 3cf2_A 281 ESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTH--GE-----------------------VERRIVSQLLTLMDGL 335 (806)
T ss_dssp HHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCC--CT-----------------------THHHHHHHHHTHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCC--Ch-----------------------HHHHHHHHHHHHHhcc
Confidence 2456789999876 4699999999999987332111 10 1356788999999999
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
.+. +.+++|+|||+++.|||||+||||||.+|+++.|+.++|++|++.++....+....++..+.+.+ ++++|||+
T Consensus 336 ~~~--~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~ 412 (806)
T 3cf2_A 336 KQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA 412 (806)
T ss_dssp CGG--GCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH
T ss_pred ccc--CCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH
Confidence 764 45899999999999999999999999999999999999999999999875443333455665544 59999874
No 9
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.97 E-value=5.3e-30 Score=245.61 Aligned_cols=203 Identities=20% Similarity=0.311 Sum_probs=157.6
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC----
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG---- 264 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~---- 264 (419)
.+|++++|.+++|++|.+.+..++.+++.|+.+|+.+++|++|+||||||||||++++|+.++..++.++...+..
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~ 86 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVG 86 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhh
Confidence 4899999999999999999999999999999999999999999999999999999999999999988888776632
Q ss_pred --hHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 265 --NKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 265 --~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
...++.+|..+ ..|+|+++||+|.+...+... ... .....+..++..|||.
T Consensus 87 ~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~--~~~-----------------------~~~~~~~~~l~~Lsgg 141 (274)
T 2x8a_A 87 ESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR--ETG-----------------------ASVRVVNQLLTEMDGL 141 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------------------------------CTTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC--cch-----------------------HHHHHHHHHHHhhhcc
Confidence 34567777764 469999999999876532110 000 0123456788899998
Q ss_pred ccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCC-CCC--hHHHHHHHhc---CCCCc
Q 040638 341 WSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITE-HPL--FSEVEELIEQ---TKVTP 414 (419)
Q Consensus 341 ~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~-~~l--~~~i~~l~~~---~~~tp 414 (419)
... ...+++++||+|+.||||++||||||.+|++++|+.++|++|++.++.... .++ .-+++.+... .++|+
T Consensus 142 ~~~--~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sg 219 (274)
T 2x8a_A 142 EAR--QQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTG 219 (274)
T ss_dssp CST--TCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCH
T ss_pred ccc--CCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCH
Confidence 543 457888999999999999999999999999999999999999999986531 222 2234555543 37999
Q ss_pred cccc
Q 040638 415 AEVA 418 (419)
Q Consensus 415 a~v~ 418 (419)
|||.
T Consensus 220 adl~ 223 (274)
T 2x8a_A 220 ADLS 223 (274)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9985
No 10
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=5.5e-29 Score=241.63 Aligned_cols=208 Identities=19% Similarity=0.289 Sum_probs=164.6
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc----
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV---- 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~---- 262 (419)
++.+|++++|.+++|+.|.+.+..++.+++.|...|..+++|+|||||||||||++++++|+.++.+++.+++..+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~ 89 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW 89 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhh
Confidence 3449999999999999999999999999999999999999999999999999999999999999999999987665
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 263 --EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 263 --~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
.....++.+|..+ ..|+||||||||.+...++........ .....+..|+..+|
T Consensus 90 ~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~----------------------~~~~~~~~lL~~l~ 147 (301)
T 3cf0_A 90 FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGG----------------------AADRVINQILTEMD 147 (301)
T ss_dssp HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSC----------------------SCCHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcch----------------------HHHHHHHHHHHHhh
Confidence 2345677777665 468999999999886532211100000 01245667899999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCcccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPAEV 417 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~v 417 (419)
++.. ...++||+|||+++.||++++|||||+..|+++.|+.++|.+|++.++.........+++.+... .++|++||
T Consensus 148 ~~~~--~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl 225 (301)
T 3cf0_A 148 GMST--KKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADL 225 (301)
T ss_dssp SSCT--TSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHH
T ss_pred cccC--CCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHH
Confidence 8853 34689999999999999999999999999999999999999999999986543222223334333 35888876
Q ss_pred c
Q 040638 418 A 418 (419)
Q Consensus 418 ~ 418 (419)
.
T Consensus 226 ~ 226 (301)
T 3cf0_A 226 T 226 (301)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.95 E-value=3.9e-27 Score=230.84 Aligned_cols=202 Identities=21% Similarity=0.253 Sum_probs=165.1
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-CCcEEEEEecccC---
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFDVYDLELSSVE--- 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~~l~l~~~~--- 263 (419)
+.+|++++|.+++|+.|.+.+..++.+++.|.. +..+++|+|||||||||||++++++|+++ +.+++.++++.+.
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~ 86 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 86 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCT-TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhC-CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh
Confidence 448999999999999999999999999999885 35667899999999999999999999999 8899999887762
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....++.+|..+ .+|+||||||||.+...+.... . ......+.+|+..+|
T Consensus 87 ~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~--~-----------------------~~~~~~~~~ll~~ld 141 (322)
T 1xwi_A 87 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--S-----------------------EAARRIKTEFLVQMQ 141 (322)
T ss_dssp CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCC--T-----------------------THHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhcccccccc--c-----------------------hHHHHHHHHHHHHHh
Confidence 456677887654 5789999999999876322110 0 012456778999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCC-hHHHHHHHhcC-CCCccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPL-FSEVEELIEQT-KVTPAE 416 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~ 416 (419)
++... ...+++|+|||+++.||++++| ||+..|+++.|+.++|..|++.++......+ ..+++.+.+.+ ++|+||
T Consensus 142 ~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 142 GVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp CSSSC-CTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHH
T ss_pred ccccc-CCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 98532 3568999999999999999999 9999999999999999999999998766554 34566676654 599998
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 219 l~ 220 (322)
T 1xwi_A 219 IS 220 (322)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 12
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.95 E-value=1.7e-27 Score=243.82 Aligned_cols=206 Identities=25% Similarity=0.338 Sum_probs=161.2
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE---- 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~---- 263 (419)
+.+|++++|.++.|+++.+.+ .++..+..|.++|...++|+||+||||||||+|++++|+.++.+++.++++.+.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v-~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~ 90 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVV-EFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFV 90 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHH-HHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCT
T ss_pred CCCHHHhCCcHHHHHHHHHHH-HHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHh
Confidence 348999999999999997755 567889999999999999999999999999999999999999999999987763
Q ss_pred --ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 264 --GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 264 --~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
+...++.+|..+ ..|+||||||||.+...++....+. . .....++.+|+..||+
T Consensus 91 g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~-------~---------------~~~~~~l~~LL~~ld~ 148 (476)
T 2ce7_A 91 GVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGG-------H---------------DEREQTLNQLLVEMDG 148 (476)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC-------------------------------CHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcC-------c---------------HHHHHHHHHHHHHHhc
Confidence 345677788665 4799999999999875322111000 0 1235678899999998
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAEVA 418 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~v~ 418 (419)
+... ..++||+|||+++.|||+++||||||.+|.++.|+.++|++|++.++......-..++..+...+ +++++||.
T Consensus 149 ~~~~--~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~ 226 (476)
T 2ce7_A 149 FDSK--EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE 226 (476)
T ss_dssp SCGG--GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred cCCC--CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH
Confidence 7543 45899999999999999999999999999999999999999999999864322111234444433 47777763
No 13
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=6.3e-27 Score=224.44 Aligned_cols=208 Identities=24% Similarity=0.284 Sum_probs=164.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-- 263 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-- 263 (419)
.++.+|++++|.+++++.|.+.+..++..++.|...|...++++||+||||||||++++++|+.++.+++.+.+..+.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 90 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK 90 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCC
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHh
Confidence 345589999999999999999999999999999999999999999999999999999999999999999999887763
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 264 ----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 264 ----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
....++.+|..+ ..|+||+|||+|.+...+....... . ......+..+++.+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~---------~-------------~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 91 FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGG---------D-------------REVQRTLMQLLAEM 148 (285)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGG---------G-------------GHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCc---------c-------------HHHHHHHHHHHHHh
Confidence 234456666544 4689999999998865221110000 0 12356777888988
Q ss_pred cCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccc
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAE 416 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~ 416 (419)
++... ...+++|+|||.++.||++++|||||+..++++.|+.+++.+|++.++.........++..+.... +++|++
T Consensus 149 ~~~~~--~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 149 DGFDA--RGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp HTTCS--SSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHH
T ss_pred hCCCC--CCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHH
Confidence 88743 346899999999999999999999999999999999999999999999865433323344444433 477776
Q ss_pred c
Q 040638 417 V 417 (419)
Q Consensus 417 v 417 (419)
|
T Consensus 227 i 227 (285)
T 3h4m_A 227 L 227 (285)
T ss_dssp H
T ss_pred H
Confidence 5
No 14
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=1.9e-26 Score=218.16 Aligned_cols=208 Identities=22% Similarity=0.336 Sum_probs=155.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-- 263 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-- 263 (419)
..+.+|++++|.+++|+.+.+.+ .++..++.|+.+|...++|++|+||||||||++++++|+.++.+++.++++.+.
T Consensus 6 ~~~~~~~~i~G~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 6 QIKTTFADVAGCDEAKEEVAELV-EYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp SSCCCGGGSCSCHHHHHHTHHHH-HHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred CCCCCHHHhcCcHHHHHHHHHHH-HHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 34669999999999999997755 457788899999999999999999999999999999999999999999887662
Q ss_pred ----ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 264 ----GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 264 ----~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
....++.+|..+. .|++++|||+|.+...+..... . +. ......+..++..+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~-~------~~---------------~~~~~~~~~ll~~l 142 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLG-G------GH---------------DEREQTLNQMLVEM 142 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSC-C------TT---------------CHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcC-C------Cc---------------hHHHHHHHHHHHHh
Confidence 3456777777653 5799999999988652221110 0 00 01245677889999
Q ss_pred cCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC-CCCccc
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT-KVTPAE 416 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~-~~tpa~ 416 (419)
|++.. ...+++|+|||+++.||++++|||||+..++++.|+.++|++|++.++......-...+..+.... +++++|
T Consensus 143 ~~~~~--~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 143 DGFEG--NEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGAD 220 (257)
T ss_dssp HTCCS--SSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHH
T ss_pred hCccc--CCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHH
Confidence 98854 345899999999999999999999999999999999999999999998754221111123333333 467777
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 221 l~ 222 (257)
T 1lv7_A 221 LA 222 (257)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 15
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.94 E-value=1.2e-26 Score=227.12 Aligned_cols=204 Identities=20% Similarity=0.255 Sum_probs=164.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-- 263 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-- 263 (419)
.++.+|++++|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++++++|++++.+++.++++.+.
T Consensus 12 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 12 KPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred CCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 45569999999999999999999999999999887 455678999999999999999999999999999999987652
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 264 ----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 264 ----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
....++.+|..+ .+|+||||||||.+...+.... .. ........++..+
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~~-----------------------~~~~~~~~ll~~l 145 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--SE-----------------------ASRRIKTELLVQM 145 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC--------C-----------------------CTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCc--ch-----------------------HHHHHHHHHHHHh
Confidence 345567777554 5689999999999876322111 10 0245667899999
Q ss_pred cCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCCh-HHHHHHHhcC-CCCcc
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLF-SEVEELIEQT-KVTPA 415 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa 415 (419)
|++... ...+++|+|||+++.||++++| ||+..|+++.|+.++|..|++.++......+. ..++.+.+.+ ++|++
T Consensus 146 ~~~~~~-~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~ 222 (322)
T 3eie_A 146 NGVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGS 222 (322)
T ss_dssp GGGGTS-CCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHH
T ss_pred cccccc-CCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHH
Confidence 998543 3468999999999999999999 99999999999999999999999987665543 4566666655 58998
Q ss_pred ccc
Q 040638 416 EVA 418 (419)
Q Consensus 416 ~v~ 418 (419)
||.
T Consensus 223 di~ 225 (322)
T 3eie_A 223 DIA 225 (322)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 16
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=1.4e-26 Score=218.93 Aligned_cols=207 Identities=24% Similarity=0.345 Sum_probs=148.9
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE---- 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~---- 263 (419)
+.+|++++|.+++|+.+.+.+. ++..++.|...|...++++|||||||||||++++++|+.++.+++.++++.+.
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~ 80 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVD-YLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIG 80 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHH-HHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHH-HHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhcc
Confidence 4589999999999999977654 57888999999999999999999999999999999999999999999987763
Q ss_pred --ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 264 --GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 264 --~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
....++.+|..+ ..++||+|||+|.+...+......... ......+..+++.+++
T Consensus 81 ~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~---------------------~~~~~~l~~ll~~~~~ 139 (262)
T 2qz4_A 81 GLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSN---------------------TEEEQTLNQLLVEMDG 139 (262)
T ss_dssp THHHHHHHHHHHHHHHTCSEEEEEECC----------------------------------------CHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccc---------------------hhHHHHHHHHHHHhhC
Confidence 234566677654 358999999999886522211100000 1124567778888888
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH--HHHHhcC-CCCccc
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV--EELIEQT-KVTPAE 416 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i--~~l~~~~-~~tpa~ 416 (419)
... ...+++|+|||+++.||++++|||||+..++++.|+.++|.+|++.++.........++ ..+.... ++++++
T Consensus 140 ~~~--~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~ 217 (262)
T 2qz4_A 140 MGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217 (262)
T ss_dssp CCT--TCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHH
T ss_pred cCC--CCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHH
Confidence 743 34689999999999999999999999999999999999999999999976554443332 3444433 478777
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 218 l~ 219 (262)
T 2qz4_A 218 IA 219 (262)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 17
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.94 E-value=5.2e-26 Score=225.74 Aligned_cols=203 Identities=21% Similarity=0.261 Sum_probs=161.6
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc----
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV---- 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~---- 262 (419)
++.+|++++|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++|+++|++++.+++.++++.+
T Consensus 46 ~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~-~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~ 124 (355)
T 2qp9_X 46 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW 124 (355)
T ss_dssp -CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCS-SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhc-CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhh
Confidence 4568999999999999999999999999999987 56677899999999999999999999999999999988765
Q ss_pred --CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 263 --EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 263 --~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
.....++.+|..+ ..|+||||||||.+...+.... . ........+|+..+|
T Consensus 125 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~--~-----------------------~~~~~~~~~ll~~l~ 179 (355)
T 2qp9_X 125 MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGE--S-----------------------EASRRIKTELLVQMN 179 (355)
T ss_dssp ---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC--------C-----------------------THHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCc--c-----------------------hHHHHHHHHHHHHhh
Confidence 2345677777655 4789999999998875221110 0 012456677899999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCC-hHHHHHHHhcC-CCCccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPL-FSEVEELIEQT-KVTPAE 416 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa~ 416 (419)
++... ...++||+|||+++.||++++| ||+..|+++.|+.++|..|++.++....+.+ ...++.+.+.+ +++++|
T Consensus 180 ~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~d 256 (355)
T 2qp9_X 180 GVGND-SQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD 256 (355)
T ss_dssp HCC----CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred ccccc-CCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 87542 3458899999999999999999 9999999999999999999999998765544 34566666654 589998
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 257 l~ 258 (355)
T 2qp9_X 257 IA 258 (355)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 18
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.93 E-value=1.1e-25 Score=231.85 Aligned_cols=205 Identities=20% Similarity=0.280 Sum_probs=166.2
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
.+.+|++++|..+.+++|.+.+..++.+++.|..+|...++|+|||||||||||++++++|+.++.+++.+++..+.
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 35589999999999999999999999999999999999999999999999999999999999999999999987652
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....++.+|..+ ..|+||||||||.+...++.... ......+..|+..||
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~-------------------------~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-------------------------EVERRIVSQLLTLMD 333 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCC-------------------------HHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccc-------------------------hHHHHHHHHHHHHhh
Confidence 234567777655 46899999999998763211100 113566778999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhc-CCCCcccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQ-TKVTPAEV 417 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~-~~~tpa~v 417 (419)
+... ...+++|+|||+++.||++++|||||+..|+++.|+.++|.+|++.++.........++..+... .+++++||
T Consensus 334 ~~~~--~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL 411 (489)
T 3hu3_A 334 GLKQ--RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADL 411 (489)
T ss_dssp HSCT--TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHH
T ss_pred cccc--CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHH
Confidence 8754 34689999999999999999999999999999999999999999999876543333334455443 35788776
Q ss_pred c
Q 040638 418 A 418 (419)
Q Consensus 418 ~ 418 (419)
.
T Consensus 412 ~ 412 (489)
T 3hu3_A 412 A 412 (489)
T ss_dssp H
T ss_pred H
Confidence 3
No 19
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.93 E-value=2e-25 Score=229.77 Aligned_cols=183 Identities=25% Similarity=0.320 Sum_probs=149.4
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC--
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 264 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~-- 264 (419)
++.+|++++|.++.|+++.+. ..++..+..|..+|...++|+||+||||||||+|+++||++++..++.++++.+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~l-v~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEI-VEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHH-HHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHH-HHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 456999999999999999764 45678889999999999999999999999999999999999999999999877632
Q ss_pred ----hHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 265 ----NKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 265 ----~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
...++.+|..+. .|+|+||||||.+...++.... +. . .....++..|+..||
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~--------~~-~-------------~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG--------GG-N-------------DEREQTLNQLLVEMD 162 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTT--------TS-S-------------HHHHHHHHHHHHHGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcC--------CC-c-------------HHHHHHHHHHHHHhc
Confidence 345677777664 5899999999988652221000 00 0 122456788999999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
+... ....+++++||+|+.|||+++||||||.+|+++.|+.++|++|++.++..
T Consensus 163 g~~~--~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~ 216 (499)
T 2dhr_A 163 GFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG 216 (499)
T ss_dssp GCCS--SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS
T ss_pred cccc--CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc
Confidence 8854 24578999999999999999999999999999999999999999998864
No 20
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.93 E-value=3.7e-25 Score=208.98 Aligned_cols=213 Identities=24% Similarity=0.327 Sum_probs=152.8
Q ss_pred ceeeeccCCC-CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 180 WQSAILDHPS-TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 180 w~~~~~~~p~-~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
|.++....|. +|++++|.+++++++.+ +...+..+..+..+++..++|++|+||||||||||++++|+.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 3 LGSVLTEAPKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp -----CCCCSCCGGGCCSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred ccccccCCCCCCHHHhCCcHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 3444444454 99999999999998865 555677888999999999999999999999999999999999998888887
Q ss_pred ecccC------ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 259 LSSVE------GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 259 l~~~~------~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
...+. ....++.+|.... .|+++++||||.+...+..... . . . ......+
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~-~-~-------~-------------~~~~~~~ 139 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG-G-G-------N-------------DEREQTL 139 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC------------------C-------------HHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCcccc-c-c-------c-------------hHHHHHH
Confidence 65431 1234666777653 5899999999987542211000 0 0 0 1123456
Q ss_pred HhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcC
Q 040638 331 FGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQT 410 (419)
Q Consensus 331 s~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~ 410 (419)
..+++.+++.... ...+++++||+|+.|||+++||||||.+|+++.|+.++|.+|++.++......-..++..+.+..
T Consensus 140 ~~ll~~l~g~~~~--~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~ 217 (254)
T 1ixz_A 140 NQLLVEMDGFEKD--TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRT 217 (254)
T ss_dssp HHHHHHHHTCCTT--CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTC
T ss_pred HHHHHHHhCCCCC--CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHc
Confidence 7788889887532 34788899999999999999999999999999999999999999988643221111233333332
Q ss_pred -CCCcccc
Q 040638 411 -KVTPAEV 417 (419)
Q Consensus 411 -~~tpa~v 417 (419)
+++++||
T Consensus 218 ~G~~~~dl 225 (254)
T 1ixz_A 218 PGFVGADL 225 (254)
T ss_dssp TTCCHHHH
T ss_pred CCCCHHHH
Confidence 4666665
No 21
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.93 E-value=3.8e-25 Score=225.81 Aligned_cols=203 Identities=21% Similarity=0.252 Sum_probs=160.8
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-CCcEEEEEecccC--
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFDVYDLELSSVE-- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~~l~l~~~~-- 263 (419)
++.+|++++|.+++|+.|.+.+..++..++.|.. +..+++|+|||||||||||++++++|+++ +.+++.++++.+.
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~-~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~ 207 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTG-KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK 207 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSG-GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-----
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhc-cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh
Confidence 4559999999999999999999999999998875 34567899999999999999999999999 8889988887652
Q ss_pred ----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 264 ----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 264 ----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
....++.+|..+ ..|+||||||||.+...+.... . ......+..|+..+
T Consensus 208 ~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~--~-----------------------~~~~~~~~~lL~~l 262 (444)
T 2zan_A 208 WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENE--S-----------------------EAARRIKTEFLVQM 262 (444)
T ss_dssp ----CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCC--C-----------------------GGGHHHHHHHHTTT
T ss_pred hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCcc--c-----------------------cHHHHHHHHHHHHH
Confidence 234567777554 5789999999998875322110 0 01245677899999
Q ss_pred cCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCC-hHHHHHHHhcC-CCCcc
Q 040638 338 NGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPL-FSEVEELIEQT-KVTPA 415 (419)
Q Consensus 338 dg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l-~~~i~~l~~~~-~~tpa 415 (419)
|++... ...++||+|||+++.|||+|+| ||+..|+++.|+.++|..|++.++....+.+ ...+..+.+.+ ++|++
T Consensus 263 ~~~~~~-~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sga 339 (444)
T 2zan_A 263 QGVGVD-NDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGA 339 (444)
T ss_dssp TCSSCC-CSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHH
T ss_pred hCcccC-CCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHH
Confidence 997532 3568999999999999999999 9999999999999999999999998765443 34566666654 58998
Q ss_pred ccc
Q 040638 416 EVA 418 (419)
Q Consensus 416 ~v~ 418 (419)
||.
T Consensus 340 dl~ 342 (444)
T 2zan_A 340 DIS 342 (444)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 22
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.92 E-value=1.1e-25 Score=217.75 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=122.6
Q ss_pred hhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC------ChHHHHHHHHHc------cCCeEEEEe
Q 040638 217 YYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE------GNKHLRKVLIAT------ENKSILVVE 284 (419)
Q Consensus 217 ~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~------~~~~l~~l~~~~------~~~sIlvid 284 (419)
+....+..+++|+|||||||||||++++++|+.++.+++.++++.+. ....++.+|..+ ..|+||+||
T Consensus 27 ~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iD 106 (293)
T 3t15_A 27 FLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFIN 106 (293)
T ss_dssp TSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEE
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 33445678889999999999999999999999999999999987762 234567777555 368999999
Q ss_pred cCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCccc---------CCCCCEEEEEecC
Q 040638 285 DIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWS---------SSGDERIIVFTTN 355 (419)
Q Consensus 285 diD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s---------~~g~~~iiV~tTN 355 (419)
|||.+....+...... .........|++.+|+... .....+++|+|||
T Consensus 107 EiD~~~~~~~~~~~~~-----------------------~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN 163 (293)
T 3t15_A 107 DLDAGAGRMGGTTQYT-----------------------VNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGN 163 (293)
T ss_dssp CCC-------------------------------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECS
T ss_pred chhhhcCCCCCCcccc-----------------------chHHHHHHHHHHHhccccccccccccccccCCCcEEEEecC
Confidence 9999865211100000 0124566778888885531 1234589999999
Q ss_pred CCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHHHHhcCCCCcccc
Q 040638 356 HKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEELIEQTKVTPAEV 417 (419)
Q Consensus 356 ~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~l~~~~~~tpa~v 417 (419)
+++.||+||+||||||.+|++ |+.++|.+|++.++...+.. .+++..+.++ +++++|
T Consensus 164 ~~~~ld~al~R~~R~d~~i~~--P~~~~r~~Il~~~~~~~~~~-~~~l~~~~~~--~~~~~l 220 (293)
T 3t15_A 164 DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCTGIFRTDNVP-AEDVVKIVDN--FPGQSI 220 (293)
T ss_dssp SCCC--CHHHHHHHEEEEEEC--CCHHHHHHHHHHHHGGGCCC-HHHHHHHHHH--SCSCCH
T ss_pred CcccCCHHHhCCCCCceeEeC--cCHHHHHHHHHHhccCCCCC-HHHHHHHhCC--CCcccH
Confidence 999999999999999999984 69999999999998754332 5566666665 666654
No 23
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.92 E-value=2.8e-26 Score=218.16 Aligned_cols=185 Identities=26% Similarity=0.385 Sum_probs=142.8
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
.+.+|++++|.+++++.+.+.+. ++..++.|..+|...++|+|||||||||||++++++|+.++.+++.++++.+.
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~ 84 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEIVD-FLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMF 84 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHHHH-HHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSC
T ss_pred CCCCHHHhCCcHHHHHHHHHHHH-HHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhh
Confidence 34589999999999999987654 57888999999999999999999999999999999999999998888876652
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....++.+|..+ ..++||+|||+|.+...+.......... .....+..|++.+|
T Consensus 85 ~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~---------------------~~~~~~~~ll~~l~ 143 (268)
T 2r62_A 85 VGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGND---------------------EREQTLNQLLAEMD 143 (268)
T ss_dssp SSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CC---------------------CSCSSTTTTTTTTT
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCch---------------------hHHHHHHHHHHHhh
Confidence 123344455443 4689999999999865321111000000 01224556788888
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
+..+. ...+++|+|||.++.||++++|||||+..|+++.|+.++|.++++.++..
T Consensus 144 ~~~~~-~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~ 198 (268)
T 2r62_A 144 GFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKG 198 (268)
T ss_dssp CSSCS-CSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSS
T ss_pred CcccC-CCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhc
Confidence 76432 34588999999999999999999999999999999999999999999865
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=214.97 Aligned_cols=205 Identities=22% Similarity=0.265 Sum_probs=159.5
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE- 263 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~- 263 (419)
..+|.+|++++|.+++++.|.+.+..+...++.|..++. .++++|||||||||||++|+++|+.++.+++.++++.+.
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~ 186 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRA-PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS 186 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGC-CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCC-CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc
Confidence 456779999999999999999999999999999988774 467999999999999999999999999999999998763
Q ss_pred -----ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 -----GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 -----~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
....++.+|..+ .+++||||||||.+...+. .... ......+..|+..
T Consensus 187 ~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~--~~~~-----------------------~~~~~~~~~ll~~ 241 (389)
T 3vfd_A 187 KYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR--EGEH-----------------------DASRRLKTEFLIE 241 (389)
T ss_dssp -----CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------------------------------CTHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCC--Cccc-----------------------hHHHHHHHHHHHH
Confidence 334566666544 4689999999999865221 1100 0124556678899
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChH-HHHHHHhcC-CCCc
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFS-EVEELIEQT-KVTP 414 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~~-~~tp 414 (419)
+++........++||+|||+++.||++++| ||+.+|+++.|+.+++..|++.++......+.+ .+..+.... ++++
T Consensus 242 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~ 319 (389)
T 3vfd_A 242 FDGVQSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSG 319 (389)
T ss_dssp HHHHC-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCH
T ss_pred hhcccccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 998866545678999999999999999999 999999999999999999999999877666544 445555443 4777
Q ss_pred ccc
Q 040638 415 AEV 417 (419)
Q Consensus 415 a~v 417 (419)
++|
T Consensus 320 ~~l 322 (389)
T 3vfd_A 320 SDL 322 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 25
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.91 E-value=4.8e-24 Score=211.73 Aligned_cols=204 Identities=21% Similarity=0.295 Sum_probs=160.1
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC--
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG-- 264 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~-- 264 (419)
.|.+|++++|.+++++.|.+.+..++..++.|...+ ..++++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 79 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~ 157 (357)
T 3d8b_A 79 PPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLR-GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW 157 (357)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGG-SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhcc-CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc
Confidence 467899999999999999999999999999888765 55779999999999999999999999999999999987632
Q ss_pred ----hHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 265 ----NKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 265 ----~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
...++.+|..+ .+++||||||||.+...+.... . ......+..|+..++
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~--~-----------------------~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGE--H-----------------------ESSRRIKTEFLVQLD 212 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------------------------------CHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCc--c-----------------------hHHHHHHHHHHHHHh
Confidence 34556666544 4689999999998875221100 0 012456778899999
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCCh-HHHHHHHhcC-CCCccc
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLF-SEVEELIEQT-KVTPAE 416 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~-~~tpa~ 416 (419)
+........+++|+|||.++.||++++| ||+..++++.|+.+++..+++.++......+. +.++.+.+.+ ++++++
T Consensus 213 ~~~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp C----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred cccccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 8865445678899999999999999999 99999999999999999999999976655554 3456666544 588887
Q ss_pred cc
Q 040638 417 VA 418 (419)
Q Consensus 417 v~ 418 (419)
|.
T Consensus 291 l~ 292 (357)
T 3d8b_A 291 MT 292 (357)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.91 E-value=7.1e-24 Score=204.51 Aligned_cols=203 Identities=22% Similarity=0.284 Sum_probs=156.1
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
.|.+|++++|.+++++.+.+.+..+..+++.|..++ ..++++||+||||||||++++++|+.++.+++.++++.+.
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~-~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~ 94 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLR-APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKY 94 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGG-CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSS
T ss_pred CCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCC-CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcc
Confidence 466999999999999999999999999999888765 3467999999999999999999999999999999987763
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....++.++..+ ..|+||+|||+|.+...+.... ... .......|+..+|
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~-----------------------~~~~~~~ll~~l~ 149 (297)
T 3b9p_A 95 VGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSE--HEA-----------------------SRRLKTEFLVEFD 149 (297)
T ss_dssp CSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-------CC-----------------------SHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCc--chH-----------------------HHHHHHHHHHHHh
Confidence 234455666443 5689999999999876332211 000 1345567888888
Q ss_pred CcccC-CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChH-HHHHHHhcC-CCCcc
Q 040638 339 GLWSS-SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFS-EVEELIEQT-KVTPA 415 (419)
Q Consensus 339 g~~s~-~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~-~i~~l~~~~-~~tpa 415 (419)
+.... .+..+++|+|||+++.||++++| ||+..++++.|+.+++..|++.++......+.+ .+..+.+.. +++++
T Consensus 150 ~~~~~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 150 GLPGNPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp HCC------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHH
T ss_pred cccccCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHH
Confidence 87543 23568899999999999999999 999999999999999999999998765554433 345555433 57777
Q ss_pred cc
Q 040638 416 EV 417 (419)
Q Consensus 416 ~v 417 (419)
+|
T Consensus 228 ~l 229 (297)
T 3b9p_A 228 DL 229 (297)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.91 E-value=1.1e-23 Score=201.69 Aligned_cols=184 Identities=25% Similarity=0.339 Sum_probs=143.2
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC---
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE--- 263 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~--- 263 (419)
++.+|++++|.+++++++.+ +...+..+..+..+++..++|++|+||||||||||++++|+.++..++.++...+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~-l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKE-IVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHH-HHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCHHHhCChHHHHHHHHH-HHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 45699999999999998865 55667788899999999999999999999999999999999999888888765441
Q ss_pred ---ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc
Q 040638 264 ---GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN 338 (419)
Q Consensus 264 ---~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld 338 (419)
....+..+|... ..|+++++||+|.+...+.... .. .. ......+..+++.++
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~--~~-------~~-------------~~~~~~~~~ll~~ls 171 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGV--GG-------GN-------------DEREQTLNQLLVEMD 171 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC-----------------C-------------HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhccccccc--CC-------cc-------------hHHHHHHHHHHHHHh
Confidence 123456677665 3589999999998754221100 00 00 112345667888888
Q ss_pred CcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 339 GLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 339 g~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
+... ....+++++||+|+.|||+++|||||+.+|+++.|+.++|.+|++.++...
T Consensus 172 gg~~--~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~ 226 (278)
T 1iy2_A 172 GFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK 226 (278)
T ss_dssp TCCT--TCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS
T ss_pred CCCC--CCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccC
Confidence 8743 234788899999999999999999999999999999999999999988643
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.91 E-value=2.1e-26 Score=250.66 Aligned_cols=184 Identities=21% Similarity=0.314 Sum_probs=151.1
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc-----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV----- 262 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~----- 262 (419)
..+|++++|.+++|+.+.+.+..++.+++.|.++++.+++++|||||||||||+|++++|+.++.+++.++++.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~ 552 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF 552 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCT
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhc
Confidence 348999999999999999999888889999999999999999999999999999999999999999998888775
Q ss_pred -CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 263 -EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 263 -~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
.....++.+|..+ ..||||||||||.+...+..... +.. ......++.||+.||+
T Consensus 553 g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~-------------~~~---------~~~~~v~~~LL~~ld~ 610 (806)
T 1ypw_A 553 GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG-------------DGG---------GAADRVINQILTEMDG 610 (806)
T ss_dssp TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCS-------------HHH---------HHHHHHHHHHHTTCC-
T ss_pred CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCC-------------Ccc---------hhHHHHHHHHHHHHhc
Confidence 2456778888765 46899999999998763221100 000 1235678899999999
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.... ..++||+|||+++.||||++|||||+.+|++++|+.+++..|++.++...
T Consensus 611 ~~~~--~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 611 MSTK--KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp -------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred cccc--CCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 8543 45899999999999999999999999999999999999999999999754
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=3.5e-22 Score=217.50 Aligned_cols=181 Identities=22% Similarity=0.300 Sum_probs=152.8
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE---- 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~---- 263 (419)
+.+|++|+|.+++++.|.+.+..++.+++.|..+++..++++||+||||||||+|++++|+.++.+++.+++..+.
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 3589999999999999999999999999999999999999999999999999999999999999999999876652
Q ss_pred --ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcC
Q 040638 264 --GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNG 339 (419)
Q Consensus 264 --~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg 339 (419)
....++.+|... ..|+|+||||||.+...++.... .........|+..+++
T Consensus 280 g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~-------------------------~~~~~~~~~Ll~ll~g 334 (806)
T 1ypw_A 280 GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-------------------------EVERRIVSQLLTLMDG 334 (806)
T ss_dssp THHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCS-------------------------HHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccc-------------------------hHHHHHHHHHHHHhhh
Confidence 234566777654 46899999999988763211100 1124566778999998
Q ss_pred cccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 340 LWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 340 ~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.... ..+++|+|||+++.||+++.|+|||+..|.++.|+.++|.++++.++...
T Consensus 335 ~~~~--~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~ 388 (806)
T 1ypw_A 335 LKQR--AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNM 388 (806)
T ss_dssp SCTT--SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTS
T ss_pred hccc--ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcC
Confidence 8543 45889999999999999999999999999999999999999999988754
No 30
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=1.8e-18 Score=169.61 Aligned_cols=178 Identities=15% Similarity=0.161 Sum_probs=136.1
Q ss_pred CCceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 178 DTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 178 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
..|.. .-.|.+|++++|.++.++.+...+....... ....++||+||||||||++++++|+.++.+++.+
T Consensus 17 ~~~~~--~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 17 ETYET--SLRPSNFDGYIGQESIKKNLNVFIAAAKKRN--------ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp --------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTT--------SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hhhhh--ccCCCCHHHhCChHHHHHHHHHHHHHHHhcC--------CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 35654 3468899999999999999988776654321 2345799999999999999999999999999999
Q ss_pred EecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 258 ELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 258 ~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
++..+.....+...+.....+++|||||||.+.. .....|+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------------------------------~~~~~Ll~~l 130 (338)
T 3pfi_A 87 AAPMIEKSGDLAAILTNLSEGDILFIDEIHRLSP------------------------------------AIEEVLYPAM 130 (338)
T ss_dssp EGGGCCSHHHHHHHHHTCCTTCEEEEETGGGCCH------------------------------------HHHHHHHHHH
T ss_pred cchhccchhHHHHHHHhccCCCEEEEechhhcCH------------------------------------HHHHHHHHHH
Confidence 9988887788888888888899999999997742 1122344444
Q ss_pred cCccc--------------CCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH
Q 040638 338 NGLWS--------------SSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV 403 (419)
Q Consensus 338 dg~~s--------------~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i 403 (419)
+...- ......++|++||+...++++|++ ||+..++++.|+.+++..+++.++......+.++.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~ 208 (338)
T 3pfi_A 131 EDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYKDSELALILQKAALKLNKTCEEKA 208 (338)
T ss_dssp HTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHH
T ss_pred HhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHH
Confidence 43210 001136899999999999999999 99999999999999999999999876554444443
No 31
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=6.6e-20 Score=185.35 Aligned_cols=162 Identities=14% Similarity=0.141 Sum_probs=74.8
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCcc-ccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC--------
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKA-WKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-------- 263 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-------- 263 (419)
.++|+++.|+.+...+..++.+...+..++.. +++++||+||||||||++++++|+.++.+++.++++.+.
T Consensus 16 ~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d 95 (444)
T 1g41_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (444)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCC
T ss_pred HhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeecc
Confidence 57999999999999998887777766665543 578899999999999999999999999999999886542
Q ss_pred ChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC
Q 040638 264 GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS 343 (419)
Q Consensus 264 ~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~ 343 (419)
....++.+|..+.. ++.+|++|.+.+ .... ......++.|++.|||+.+.
T Consensus 96 ~e~~lr~lf~~a~~--~~~~De~d~~~~---~~~~-------------------------~~e~rvl~~LL~~~dg~~~~ 145 (444)
T 1g41_A 96 VDSIIRDLTDSAMK--LVRQQEIAKNRA---RAED-------------------------VAEERILDALLPPAKNQWGE 145 (444)
T ss_dssp THHHHHHHHHHHHH--HHHHHHHHSCC-----------------------------------------------------
T ss_pred HHHHHHHHHHHHHh--cchhhhhhhhhc---cchh-------------------------hHHHHHHHHHHHHhhccccc
Confidence 34567777765432 334677775432 1110 11356888999999999654
Q ss_pred CCCCEEEEEe-cCCCCCCCccccCCCCcceEEEeCCCCHH-HHHHHH
Q 040638 344 SGDERIIVFT-TNHKDRLDPALLRPGRMDVHIHMSYCTLC-GFKILA 388 (419)
Q Consensus 344 ~g~~~iiV~t-TN~~~~LdpALlrpGR~d~~I~~~~~~~~-~~~~l~ 388 (419)
. .+ +++ ||+++.|||||+||||||.+|+++.|+.. .+.+|+
T Consensus 146 ~---~v-~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 146 V---EN-HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp -----------------------------------------------
T ss_pred c---cc-ccccccCHHHHHHHHHcCCCcceEEEEcCCCCccchhhhh
Confidence 2 23 444 99999999999999999999999999987 555543
No 32
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.78 E-value=1.9e-19 Score=184.25 Aligned_cols=179 Identities=14% Similarity=0.067 Sum_probs=112.7
Q ss_pred CCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC--CcEEEEEecccC---
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH--FDVYDLELSSVE--- 263 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~--~~v~~l~l~~~~--- 263 (419)
..|++++|.+++|+.+...+.... .|..+++|+|||||||||||++++++|++++ .+++.++++.+.
T Consensus 34 ~~~~~iiG~~~~~~~l~~~~~~~~--------~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~ 105 (456)
T 2c9o_A 34 QAASGLVGQENAREACGVIVELIK--------SKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTE 105 (456)
T ss_dssp SEETTEESCHHHHHHHHHHHHHHH--------TTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSS
T ss_pred hchhhccCHHHHHHHHHHHHHHHH--------hCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHh
Confidence 378999999999998876554332 2455678999999999999999999999999 889999887763
Q ss_pred --ChHHHHHHHHHc-----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 264 --GNKHLRKVLIAT-----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 264 --~~~~l~~l~~~~-----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
....++++|..+ ..|+||||||+|.+...+.....+.... .....-.++.. ............++..
T Consensus 106 ~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~-----~~~~~~~~l~~-~~~~~~~~~~~~ll~~ 179 (456)
T 2c9o_A 106 IKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGK-----TISHVIIGLKT-AKGTKQLKLDPSIFES 179 (456)
T ss_dssp SCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC-------------------CEEEEEEE-TTEEEEEEECHHHHHH
T ss_pred hhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcch-----HHHHHHHHHhc-cccchhHhhhHHHHHH
Confidence 223478888776 4689999999999987432221100000 00000000000 0000000011124444
Q ss_pred hcCcccCCCCCEEEEEecCCCCCCCccccCCCCcce--EEEeCCCCH
Q 040638 337 TNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDV--HIHMSYCTL 381 (419)
Q Consensus 337 ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~--~I~~~~~~~ 381 (419)
++......++.++|++|||+++.+|+|+.||||||. .+.+|.|+.
T Consensus 180 l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~ 226 (456)
T 2c9o_A 180 LQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKG 226 (456)
T ss_dssp HHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred HhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCch
Confidence 442211233345555799999999999999999999 566677754
No 33
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=2.2e-18 Score=166.62 Aligned_cols=180 Identities=17% Similarity=0.194 Sum_probs=132.3
Q ss_pred cc-ccccchhhHHHHHHHHHHHhhchhhhhhcCccccC---ceEEeCCCCCcHHHHHHHHHHHcC-------CcEEEEEe
Q 040638 191 FD-TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKR---GYLLFGPLGTGKSSLIAAMANYLH-------FDVYDLEL 259 (419)
Q Consensus 191 f~-~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r---G~LL~GPpGtGKTsL~~aiA~~l~-------~~v~~l~l 259 (419)
++ +++|.+++|+.|.+.+.... .+..+.+.|+..++ ++||+||||||||++++++|+.++ .+++.+++
T Consensus 29 l~~~i~G~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~ 107 (309)
T 3syl_A 29 LDRELIGLKPVKDRIRETAALLL-VERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTR 107 (309)
T ss_dssp HHHHSSSCHHHHHHHHHHHHHHH-HHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECG
T ss_pred HHHHccChHHHHHHHHHHHHHHH-hHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcH
Confidence 44 69999999999988887665 35666677765544 499999999999999999999983 37888887
Q ss_pred cccC------ChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 260 SSVE------GNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 260 ~~~~------~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+.+. ....+..+|... .++||+|||+|.+...++... . ....+..|
T Consensus 108 ~~l~~~~~g~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~----~-----------------------~~~~~~~L 159 (309)
T 3syl_A 108 DDLVGQYIGHTAPKTKEVLKRA-MGGVLFIDEAYYLYRPDNERD----Y-----------------------GQEAIEIL 159 (309)
T ss_dssp GGTCCSSTTCHHHHHHHHHHHH-TTSEEEEETGGGSCCCC---C----C-----------------------THHHHHHH
T ss_pred HHhhhhcccccHHHHHHHHHhc-CCCEEEEEChhhhccCCCccc----c-----------------------cHHHHHHH
Confidence 7652 234456666554 578999999998874221100 0 13455567
Q ss_pred HHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHH
Q 040638 334 LNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEVEE 405 (419)
Q Consensus 334 l~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~ 405 (419)
++.++.. ....++|+|||..+ .++|+|++ ||+.+|+|+.|+.+++..|++.++......+.++...
T Consensus 160 l~~l~~~----~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~ 230 (309)
T 3syl_A 160 LQVMENN----RDDLVVILAGYADRMENFFQSNPGFRS--RIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAET 230 (309)
T ss_dssp HHHHHHC----TTTCEEEEEECHHHHHHHHHHSTTHHH--HEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHH
T ss_pred HHHHhcC----CCCEEEEEeCChHHHHHHHhhCHHHHH--hCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 7777754 24578888888654 35899999 9999999999999999999999998665555554433
No 34
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=2.5e-17 Score=160.13 Aligned_cols=177 Identities=20% Similarity=0.195 Sum_probs=134.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~ 265 (419)
-.|.+|++++|.++.++.+...+....... ...+++||+||||||||++++++|+.++.+++.++++.+...
T Consensus 6 ~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~--------~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 77 (324)
T 1hqc_A 6 LRPKTLDEYIGQERLKQKLRVYLEAAKARK--------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP 77 (324)
T ss_dssp CCCCSTTTCCSCHHHHHHHHHHHHHHHHHC--------SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH
T ss_pred cCcccHHHhhCHHHHHHHHHHHHHHHHccC--------CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCCh
Confidence 367899999999999988877776553211 234679999999999999999999999999999998888777
Q ss_pred HHHHHHHHH-ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc---
Q 040638 266 KHLRKVLIA-TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW--- 341 (419)
Q Consensus 266 ~~l~~l~~~-~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~--- 341 (419)
..+...+.. ...+++|||||||.+.. .....|+..++...
T Consensus 78 ~~l~~~l~~~~~~~~~l~lDEi~~l~~------------------------------------~~~~~L~~~l~~~~~~~ 121 (324)
T 1hqc_A 78 GDLAAILANSLEEGDILFIDEIHRLSR------------------------------------QAEEHLYPAMEDFVMDI 121 (324)
T ss_dssp HHHHHHHTTTCCTTCEEEETTTTSCCH------------------------------------HHHHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHhccCCCEEEEECCccccc------------------------------------chHHHHHHHHHhhhhHH
Confidence 777777766 56789999999997642 11122334443221
Q ss_pred --cC---------CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH-HHHHHh
Q 040638 342 --SS---------SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE-VEELIE 408 (419)
Q Consensus 342 --s~---------~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~ 408 (419)
.. .....++|++||.++.++++|.+ ||+..+.++.|+.+++..+++.++......+.++ ++.+.+
T Consensus 122 v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~ 198 (324)
T 1hqc_A 122 VIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGR 198 (324)
T ss_dssp CCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred hccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 00 01246789999999999999998 9999999999999999999999987655555444 333433
No 35
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.69 E-value=1.2e-16 Score=155.71 Aligned_cols=157 Identities=17% Similarity=0.126 Sum_probs=116.3
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.|.. .-.|.+|++++|.++.++.+...+. . ...+..+|++||||||||++++++|+.++.+++.++
T Consensus 15 ~~~~--k~rP~~~~~ivg~~~~~~~l~~~l~----~--------~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 15 ILEQ--KYRPSTIDECILPAFDKETFKSITS----K--------GKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp SHHH--HSCCCSTTTSCCCHHHHHHHHHHHH----T--------TCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred hHHH--hhCCCCHHHHhCcHHHHHHHHHHHH----c--------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4654 4578999999999988887766554 1 123456899999999999999999999999999999
Q ss_pred ecccCChHHHHHHHHHc----c---CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 259 LSSVEGNKHLRKVLIAT----E---NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 259 l~~~~~~~~l~~l~~~~----~---~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
.+... ...++..+... . .+.|++|||+|.+.. .....
T Consensus 81 ~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------------------------------~~~~~ 124 (324)
T 3u61_B 81 GSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------------------------------AESQR 124 (324)
T ss_dssp TTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------------------------------HHHHH
T ss_pred ccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------------------------------HHHHH
Confidence 87654 45555544331 1 578999999997741 01122
Q ss_pred hHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 332 GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 332 ~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
.|+..++... ....+|+|||++..++++|++ |+. .++++.|+.+++.+++..++
T Consensus 125 ~L~~~le~~~----~~~~iI~~~n~~~~l~~~l~s--R~~-~i~~~~~~~~e~~~il~~~~ 178 (324)
T 3u61_B 125 HLRSFMEAYS----SNCSIIITANNIDGIIKPLQS--RCR-VITFGQPTDEDKIEMMKQMI 178 (324)
T ss_dssp HHHHHHHHHG----GGCEEEEEESSGGGSCTTHHH--HSE-EEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC----CCcEEEEEeCCccccCHHHHh--hCc-EEEeCCCCHHHHHHHHHHHH
Confidence 3555555432 346788999999999999999 884 69999999998766655443
No 36
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.68 E-value=4.5e-16 Score=141.47 Aligned_cols=160 Identities=17% Similarity=0.156 Sum_probs=116.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEec
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELS 260 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~ 260 (419)
..|.+|++++|.++.++.+.+.+.. . ....++|+||||||||++++++++.+ ...++.++++
T Consensus 11 ~~p~~~~~~~g~~~~~~~l~~~l~~----~---------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~ 77 (226)
T 2chg_A 11 YRPRTLDEVVGQDEVIQRLKGYVER----K---------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNAS 77 (226)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHT----T---------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETT
T ss_pred cCCCCHHHHcCcHHHHHHHHHHHhC----C---------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccc
Confidence 4688999999998888877665532 1 12349999999999999999999986 4557777776
Q ss_pred ccCChHHHHHHHHH--------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 040638 261 SVEGNKHLRKVLIA--------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332 (419)
Q Consensus 261 ~~~~~~~l~~l~~~--------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 332 (419)
.......+...+.. ...+.||+|||+|.+.. .....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------------~~~~~ 121 (226)
T 2chg_A 78 DERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------------DAQAA 121 (226)
T ss_dssp CTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH------------------------------------HHHHH
T ss_pred cccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH------------------------------------HHHHH
Confidence 65554445444322 14588999999997642 11223
Q ss_pred HHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChH
Q 040638 333 LLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFS 401 (419)
Q Consensus 333 Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~ 401 (419)
|+..++.. .....+|+|||.++.+++++.+ |+. .++++.++.++...++..++...+..+.+
T Consensus 122 l~~~l~~~----~~~~~~i~~~~~~~~~~~~l~~--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 183 (226)
T 2chg_A 122 LRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITE 183 (226)
T ss_dssp HHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred HHHHHHhc----CCCCeEEEEeCChhhcCHHHHH--hCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 44445443 2357888999999999999999 887 89999999999999999988644444433
No 37
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=2.2e-16 Score=152.06 Aligned_cols=172 Identities=18% Similarity=0.283 Sum_probs=121.4
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcC-ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC-------
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVG-KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG------- 264 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g-~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~------- 264 (419)
.++|.++.++.+...+...+.......... ...+.++||+||||||||++++++|+.++.+++.++++.+..
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~ 95 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKE 95 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGS
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCcc
Confidence 488999999999888876544332222111 124568999999999999999999999999999999876632
Q ss_pred -hHHHHHHHHHc-------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH
Q 040638 265 -NKHLRKVLIAT-------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNF 336 (419)
Q Consensus 265 -~~~l~~l~~~~-------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ 336 (419)
...++.++... ..++||+|||+|.+........ . + .........|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~------------~-~-----------~~~~~~~~~Ll~~ 151 (310)
T 1ofh_A 96 VDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG------------A-D-----------VSREGVQRDLLPL 151 (310)
T ss_dssp TTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS------------S-H-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccc------------c-c-----------hhHHHHHHHHHHH
Confidence 23466655432 3478999999998865211000 0 0 1122345567777
Q ss_pred hcCcccC------CCCCEEEEEe----cCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 337 TNGLWSS------SGDERIIVFT----TNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 337 ldg~~s~------~g~~~iiV~t----TN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
+++.... .....++|+| ++.+..++|+|++ ||+.+|+|+.|+.+++..|++.
T Consensus 152 le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~~~~~~~~~il~~ 213 (310)
T 1ofh_A 152 VEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILTE 213 (310)
T ss_dssp HHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHS
T ss_pred hcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCCcCHHHHHHHHHh
Confidence 7764210 1234677777 5678899999998 9999999999999999999984
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.65 E-value=3.4e-16 Score=163.42 Aligned_cols=160 Identities=18% Similarity=0.148 Sum_probs=111.4
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChH----
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNK---- 266 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~---- 266 (419)
.++++|.+++++.+.+.+......... ....++|+||||||||||+++||+.++.+++.+++..+....
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~-------~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSL-------KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSC-------CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccC-------CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 456899999999886655433211111 234599999999999999999999999999999887753322
Q ss_pred -----------HHHHHHHHcc-CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHH
Q 040638 267 -----------HLRKVLIATE-NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334 (419)
Q Consensus 267 -----------~l~~l~~~~~-~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll 334 (419)
.+...|..+. ...|++|||||.+....+ ....+.|+
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~--------------------------------~~~~~~LL 200 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFR--------------------------------GDPSSAML 200 (543)
T ss_dssp -----------CHHHHHHTTCSSSEEEEEEESSSCC-----------------------------------------CCG
T ss_pred HHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhc--------------------------------cCHHHHHH
Confidence 1233344332 455999999998864111 11234466
Q ss_pred HHhcCcccC-----------CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 335 NFTNGLWSS-----------SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 335 ~~ldg~~s~-----------~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
..+|..... .-..+++|+|||.++.|||+|++ ||+ .|+++.|+.+++..|++.|+
T Consensus 201 ~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~-vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 201 EVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RME-IINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp GGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEE-EEECCCCCHHHHHHHHHHTH
T ss_pred HHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcc-eeeeCCCCHHHHHHHHHHHH
Confidence 666643211 01457899999999999999999 996 69999999999999999987
No 39
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.64 E-value=1e-15 Score=159.01 Aligned_cols=177 Identities=15% Similarity=0.224 Sum_probs=120.3
Q ss_pred CCceeeeccCCCCccccccchhhHHHHHHHHHHHhh-chhhhhhcCcc---ccCceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 178 DTWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLK-RKDYYRRVGKA---WKRGYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 178 ~~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~-~~~~~~~~g~~---~~rG~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
..|.. .-.|.+|++++|.++.++.+.+.+..... .+..+.+.|.. ..+++||+||||||||++|+++|+.++.+
T Consensus 27 ~lW~e--kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 27 KLWTV--KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CCHHH--HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CCccc--ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 45755 45789999999999999999888876443 23445555543 56789999999999999999999999999
Q ss_pred EEEEEecccCChHHHHHHHH-------------H-------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhH
Q 040638 254 VYDLELSSVEGNKHLRKVLI-------------A-------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDL 313 (419)
Q Consensus 254 v~~l~l~~~~~~~~l~~l~~-------------~-------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (419)
++.++++.......+...+. . ...++||+|||+|.+....
T Consensus 105 ~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-------------------- 164 (516)
T 1sxj_A 105 ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-------------------- 164 (516)
T ss_dssp EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS--------------------
T ss_pred EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh--------------------
Confidence 99999887765443333222 1 1457899999999875410
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCC--CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHh
Q 040638 314 MLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNH--KDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNY 391 (419)
Q Consensus 314 ~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~--~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~ 391 (419)
...+..|++.++.. +.. +|+++|. ...++ ++. |+...|.|+.|+.+++..++...
T Consensus 165 -------------~~~l~~L~~~l~~~-----~~~-iIli~~~~~~~~l~-~l~---~r~~~i~f~~~~~~~~~~~L~~i 221 (516)
T 1sxj_A 165 -------------RGGVGQLAQFCRKT-----STP-LILICNERNLPKMR-PFD---RVCLDIQFRRPDANSIKSRLMTI 221 (516)
T ss_dssp -------------TTHHHHHHHHHHHC-----SSC-EEEEESCTTSSTTG-GGT---TTSEEEECCCCCHHHHHHHHHHH
T ss_pred -------------HHHHHHHHHHHHhc-----CCC-EEEEEcCCCCccch-hhH---hceEEEEeCCCCHHHHHHHHHHH
Confidence 00122344444432 112 3344443 33444 343 45678999999999999999887
Q ss_pred hCCCCCCC
Q 040638 392 LGITEHPL 399 (419)
Q Consensus 392 l~~~~~~l 399 (419)
+..+...+
T Consensus 222 ~~~~~~~i 229 (516)
T 1sxj_A 222 AIREKFKL 229 (516)
T ss_dssp HHHHTCCC
T ss_pred HHHcCCCC
Confidence 75444333
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.64 E-value=7.9e-16 Score=146.35 Aligned_cols=167 Identities=20% Similarity=0.193 Sum_probs=110.7
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC-------Ch
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE-------GN 265 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~-------~~ 265 (419)
.+++..+..+.++....... ..+...+...++++||+||||||||++++++|+.++.+++.+++...- ..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~---~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~~ 110 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLV---QQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAKC 110 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHH---HHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHH---HHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHHH
Confidence 45555555555555422221 122223345667899999999999999999999999999988775421 11
Q ss_pred HHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC
Q 040638 266 KHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS 343 (419)
Q Consensus 266 ~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~ 343 (419)
..++.+|... ..++||+|||||.+++...... . . ....+..|...+++...
T Consensus 111 ~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~-~-----------------------~~~~l~~L~~~~~~~~~- 163 (272)
T 1d2n_A 111 QAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGP--R-F-----------------------SNLVLQALLVLLKKAPP- 163 (272)
T ss_dssp HHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTT--B-C-----------------------CHHHHHHHHHHTTCCCS-
T ss_pred HHHHHHHHHHHhcCCcEEEEEChhhhhccCCCCh--h-H-----------------------HHHHHHHHHHHhcCccC-
Confidence 3556666654 4589999999998865221110 0 0 12344455566666532
Q ss_pred CCCCEEEEEecCCCCCCCc-cccCCCCcceEEEeCCCCH-HHHHHHHHHh
Q 040638 344 SGDERIIVFTTNHKDRLDP-ALLRPGRMDVHIHMSYCTL-CGFKILASNY 391 (419)
Q Consensus 344 ~g~~~iiV~tTN~~~~Ldp-ALlrpGR~d~~I~~~~~~~-~~~~~l~~~~ 391 (419)
.+..+++|+|||.++.||+ ++.+ ||+..|++|.++. ++...++...
T Consensus 164 ~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p~l~~r~~i~~i~~~~ 211 (272)
T 1d2n_A 164 QGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVPNIATGEQLLEALELL 211 (272)
T ss_dssp TTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECCCEEEHHHHHHHHHHH
T ss_pred CCCCEEEEEecCChhhcchhhhhc--ccceEEcCCCccHHHHHHHHHHhc
Confidence 3445778999999999998 5555 9999999987766 6666666653
No 41
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.64 E-value=6.5e-15 Score=135.30 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=121.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
..|.+|++++|.++.++.+...+... ..++.++|+||||||||++++++++.+..
T Consensus 17 ~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~ 84 (250)
T 1njg_A 17 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 84 (250)
T ss_dssp TCCCSGGGCCSCHHHHHHHHHHHHHT------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSH
T ss_pred cCCccHHHHhCcHHHHHHHHHHHHcC------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccH
Confidence 46789999999988888877655421 12346999999999999999999998743
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.+..........++.++.... .+.+|+|||+|.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------------------ 140 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------------ 140 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------------------
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------------------
Confidence 334444332223345666665432 478999999997521
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
..+..|+..++.. .....+|++||.++.+++++.+ |+ ..|+++.++.++..+++..++...
T Consensus 141 ------------~~~~~l~~~l~~~----~~~~~~i~~t~~~~~~~~~l~~--r~-~~i~l~~l~~~e~~~~l~~~~~~~ 201 (250)
T 1njg_A 141 ------------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 201 (250)
T ss_dssp ------------HHHHHHHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHT
T ss_pred ------------HHHHHHHHHHhcC----CCceEEEEEeCChHhCCHHHHH--Hh-hhccCCCCCHHHHHHHHHHHHHhc
Confidence 1233456666554 3457889999999999999998 75 789999999999999999988655
Q ss_pred CCCChHH-HHHHHhcCCCCc
Q 040638 396 EHPLFSE-VEELIEQTKVTP 414 (419)
Q Consensus 396 ~~~l~~~-i~~l~~~~~~tp 414 (419)
...+.++ ++.+.+..+-.|
T Consensus 202 ~~~~~~~~~~~l~~~~~G~~ 221 (250)
T 1njg_A 202 HIAHEPRALQLLARAAEGSL 221 (250)
T ss_dssp TCCBCHHHHHHHHHHHTTCH
T ss_pred CCCCCHHHHHHHHHHcCCCH
Confidence 4444333 344444333333
No 42
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.64 E-value=2.8e-15 Score=148.30 Aligned_cols=166 Identities=16% Similarity=0.128 Sum_probs=111.3
Q ss_pred CCCC-ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC--cEEEEEeccc-
Q 040638 187 HPST-FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF--DVYDLELSSV- 262 (419)
Q Consensus 187 ~p~~-f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~--~v~~l~l~~~- 262 (419)
.|.. |++++|.++.++.+...+..... |...++++||+||||||||++++++|+.++. +++.+.+..+
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~--------~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~ 109 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIRE--------GKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIF 109 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT--------TCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGS
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHc--------CCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhh
Confidence 4554 99999999998876443332221 3344578999999999999999999999975 5555554331
Q ss_pred -------------------------------------------------CC-----hHHHHHHHHHcc-----------C
Q 040638 263 -------------------------------------------------EG-----NKHLRKVLIATE-----------N 277 (419)
Q Consensus 263 -------------------------------------------------~~-----~~~l~~l~~~~~-----------~ 277 (419)
.+ ...++..+.... .
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~ 189 (368)
T 3uk6_A 110 SLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEII 189 (368)
T ss_dssp CSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---C
T ss_pred hcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcccccc
Confidence 00 223444432221 1
Q ss_pred CeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEec---
Q 040638 278 KSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTT--- 354 (419)
Q Consensus 278 ~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tT--- 354 (419)
|+||+|||+|.+.. .....|+..++... ...++++|.
T Consensus 190 ~~vl~IDEi~~l~~------------------------------------~~~~~L~~~le~~~----~~~~ii~t~~~~ 229 (368)
T 3uk6_A 190 PGVLFIDEVHMLDI------------------------------------ESFSFLNRALESDM----APVLIMATNRGI 229 (368)
T ss_dssp BCEEEEESGGGSBH------------------------------------HHHHHHHHHTTCTT----CCEEEEEESCSE
T ss_pred CceEEEhhccccCh------------------------------------HHHHHHHHHhhCcC----CCeeeeecccce
Confidence 57999999997632 12334555554431 223333333
Q ss_pred --------CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH
Q 040638 355 --------NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV 403 (419)
Q Consensus 355 --------N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i 403 (419)
|.+..++++|++ ||.. |+++.|+.+++..+++.++......+.++.
T Consensus 230 ~~i~~t~~~~~~~l~~~l~s--R~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~ 283 (368)
T 3uk6_A 230 TRIRGTSYQSPHGIPIDLLD--RLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDA 283 (368)
T ss_dssp EECBTSSCEEETTCCHHHHT--TEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred eeeeccCCCCcccCCHHHHh--hccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 357899999999 9977 899999999999999998876655555543
No 43
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.64 E-value=3.6e-16 Score=155.12 Aligned_cols=173 Identities=18% Similarity=0.243 Sum_probs=115.9
Q ss_pred cccchhhHHHHHHHHHHHhhchhhhhh-cCc-cccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCC-------
Q 040638 194 LAMVTDMKKMIMDDLERFLKRKDYYRR-VGK-AWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEG------- 264 (419)
Q Consensus 194 l~g~~~~k~~i~~~l~~~~~~~~~~~~-~g~-~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~------- 264 (419)
++|.+++++.+...+............ .+. ..++++||+||||||||++|+++|+.++.+++.++++.+..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 689999999998888655543221111 112 24567999999999999999999999999999999877642
Q ss_pred -hHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh
Q 040638 265 -NKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFT 337 (419)
Q Consensus 265 -~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l 337 (419)
...++.++... ..++||||||||.+...++...... + .........|+..|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~-----------~-----------~~~~~~~~~Ll~~l 154 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITR-----------D-----------VSGEGVQQALLKLI 154 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---C-----------H-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhccccccccccc-----------c-----------cchHHHHHHHHHHh
Confidence 23445555443 3578999999998765221111000 0 11234667788888
Q ss_pred cCcccC-----------------CCCCEEEEEecCCC----------CC-------------------------------
Q 040638 338 NGLWSS-----------------SGDERIIVFTTNHK----------DR------------------------------- 359 (419)
Q Consensus 338 dg~~s~-----------------~g~~~iiV~tTN~~----------~~------------------------------- 359 (419)
|+.... ...++++|+|+|.. ..
T Consensus 155 eg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l 234 (363)
T 3hws_A 155 EGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDL 234 (363)
T ss_dssp HCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHH
T ss_pred cCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHH
Confidence 854210 11223444554432 11
Q ss_pred ----CCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 360 ----LDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 360 ----LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
++|+|+. |||..+.++.|+.+++..|+..
T Consensus 235 ~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 235 IKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp HHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred HHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 6788887 9999999999999999999886
No 44
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=1.3e-15 Score=155.30 Aligned_cols=151 Identities=19% Similarity=0.258 Sum_probs=110.8
Q ss_pred ccCCCCccccccchhhH---HHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 185 LDHPSTFDTLAMVTDMK---KMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k---~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.-.|.+|++++|.++++ +.+...+..- . ..++|||||||||||+++++||+.++.+++.++...
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~-----------~--~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~ 85 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEAG-----------H--LHSMILWGPPGTGKTTLAEVIARYANADVERISAVT 85 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHHT-----------C--CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHcC-----------C--CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc
Confidence 35689999999998887 4554433321 1 257999999999999999999999999999988755
Q ss_pred cCChHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 262 VEGNKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 262 ~~~~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
. +...++.++..+ ..++||||||||.+.. .....|+.
T Consensus 86 ~-~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~------------------------------------~~q~~LL~ 128 (447)
T 3pvs_A 86 S-GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK------------------------------------SQQDAFLP 128 (447)
T ss_dssp C-CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------------------------------CCHH
T ss_pred C-CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH------------------------------------HHHHHHHH
Confidence 4 345566665443 3689999999997732 11223566
Q ss_pred HhcCcccCCCCCEEEEEec--CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 336 FTNGLWSSSGDERIIVFTT--NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 336 ~ldg~~s~~g~~~iiV~tT--N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.++. +.+++|++| |....++++|++ |+. .+.++.++.++...+++.++..
T Consensus 129 ~le~------~~v~lI~att~n~~~~l~~aL~s--R~~-v~~l~~l~~edi~~il~~~l~~ 180 (447)
T 3pvs_A 129 HIED------GTITFIGATTENPSFELNSALLS--RAR-VYLLKSLSTEDIEQVLTQAMED 180 (447)
T ss_dssp HHHT------TSCEEEEEESSCGGGSSCHHHHT--TEE-EEECCCCCHHHHHHHHHHHHHC
T ss_pred HHhc------CceEEEecCCCCcccccCHHHhC--cee-EEeeCCcCHHHHHHHHHHHHHH
Confidence 6654 235555544 555689999999 875 6789999999999999999875
No 45
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.62 E-value=1.9e-16 Score=140.63 Aligned_cols=152 Identities=18% Similarity=0.202 Sum_probs=103.5
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|.+|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++++.+ +.+++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 17 EQGKLDPVIGRDEEIRRTIQVLQR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hhccccccccchHHHHHHHHHHhc-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 467899999998877777664421 225679999999999999999999987 677787
Q ss_pred EEecccC--------ChHHHHHHHH---HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 257 LELSSVE--------GNKHLRKVLI---ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 257 l~l~~~~--------~~~~l~~l~~---~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
+++..+. ....+..++. ....++||+|||+|.+...... .....
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~--~~~~~----------------------- 138 (195)
T 1jbk_A 84 LDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKA--DGAMD----------------------- 138 (195)
T ss_dssp ECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT--------CCC-----------------------
T ss_pred eeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcc--cchHH-----------------------
Confidence 7765442 1123444444 3356889999999988642111 00000
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHH
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILA 388 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~ 388 (419)
-... +...++. +...+|++||.++ .+|+++++ ||+ .|+++.|+.+++.+|+
T Consensus 139 ~~~~---l~~~~~~------~~~~~i~~~~~~~~~~~~~~~~~l~~--r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 139 AGNM---LKPALAR------GELHCVGATTLDEYRQYIEKDAALER--RFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CHHH---HHHHHHT------TSCCEEEEECHHHHHHHTTTCHHHHT--TEE-EEECCCCCHHHHHTTC
T ss_pred HHHH---HHHhhcc------CCeEEEEeCCHHHHHHHHhcCHHHHH--Hhc-eeecCCCCHHHHHHHh
Confidence 0111 1122221 2466888888776 78999999 998 6999999999998765
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=4.6e-15 Score=144.98 Aligned_cols=155 Identities=12% Similarity=0.107 Sum_probs=107.3
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHH
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKH 267 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~ 267 (419)
|..+++++|.+++++.+...+.. .+++||+||||||||++++++|+.++.+++.+.++.......
T Consensus 23 ~~~~~~i~g~~~~~~~l~~~l~~---------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 23 DEVGKVVVGQKYMINRLLIGICT---------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHTTTCCSCHHHHHHHHHHHHH---------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHH
T ss_pred HHhccceeCcHHHHHHHHHHHHc---------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhh
Confidence 44567888988888777655432 247999999999999999999999999999888743222222
Q ss_pred HHHH--HH-------HccC---CeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHH
Q 040638 268 LRKV--LI-------ATEN---KSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLN 335 (419)
Q Consensus 268 l~~l--~~-------~~~~---~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~ 335 (419)
+... +. .... .+|++|||+|.+.. .....|+.
T Consensus 88 l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~------------------------------------~~~~~Ll~ 131 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRSPA------------------------------------KVQSALLE 131 (331)
T ss_dssp HHEEEEEETTTTEEEEEECTTCSSEEEEETGGGSCH------------------------------------HHHHHHHH
T ss_pred cCCceeecCCCCceEeccCcccccEEEEEccccCCH------------------------------------HHHHHHHH
Confidence 1110 00 0112 37999999997532 12233444
Q ss_pred HhcCc-------ccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 336 FTNGL-------WSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 336 ~ldg~-------~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.++.. ........++|+|+|..+ .++++|++ ||+.++++++|+.+++.+|++.++...
T Consensus 132 ~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~p~~~~~~~il~~~~~~~ 201 (331)
T 2r44_A 132 CMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTYLDKESELEVMRRVSNMN 201 (331)
T ss_dssp HHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCCCCHHHHHHHHHHHHCTT
T ss_pred HHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCCCCHHHHHHHHHhccccC
Confidence 44321 111223467778888554 38999999 999999999999999999999988753
No 47
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=1e-14 Score=140.75 Aligned_cols=161 Identities=14% Similarity=0.213 Sum_probs=112.5
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHH
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHL 268 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l 268 (419)
+.++|....++.+...+......-. . ...+...+||+||||||||++++++|+.+ +.+++.++++.+......
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~---~-~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 92 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLK---D-PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 92 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCS---C-TTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCC---C-CCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccH
Confidence 3567888888888877766532110 0 01122359999999999999999999998 456888888876543333
Q ss_pred HHHH---------------H---HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 269 RKVL---------------I---ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 269 ~~l~---------------~---~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
..++ . .....+|++|||+|.+.. ...
T Consensus 93 ~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~------------------------------------~~~ 136 (311)
T 4fcw_A 93 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHP------------------------------------DVF 136 (311)
T ss_dssp HHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCH------------------------------------HHH
T ss_pred HHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCH------------------------------------HHH
Confidence 2222 1 112458999999997632 233
Q ss_pred HhHHHHhcCcccCC-------CCCEEEEEecCC--------------------------CCCCCccccCCCCcceEEEeC
Q 040638 331 FGLLNFTNGLWSSS-------GDERIIVFTTNH--------------------------KDRLDPALLRPGRMDVHIHMS 377 (419)
Q Consensus 331 s~Ll~~ldg~~s~~-------g~~~iiV~tTN~--------------------------~~~LdpALlrpGR~d~~I~~~ 377 (419)
..|+..++...... -...++|+|||. .+.++|+|+. ||+..+.++
T Consensus 137 ~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~ 214 (311)
T 4fcw_A 137 NILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFR 214 (311)
T ss_dssp HHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred HHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeC
Confidence 34555555432111 125789999998 5578999998 999999999
Q ss_pred CCCHHHHHHHHHHhhCC
Q 040638 378 YCTLCGFKILASNYLGI 394 (419)
Q Consensus 378 ~~~~~~~~~l~~~~l~~ 394 (419)
.|+.+++..|++.++..
T Consensus 215 p~~~~~~~~i~~~~l~~ 231 (311)
T 4fcw_A 215 PLTKEQIRQIVEIQMSY 231 (311)
T ss_dssp CCCHHHHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 48
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.59 E-value=4.2e-15 Score=143.54 Aligned_cols=167 Identities=17% Similarity=0.168 Sum_probs=118.1
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEe
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLEL 259 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l 259 (419)
...|.+|++++|.++.++.+...+. . + . ...+||+||||||||++++++|+.+ +.++..+++
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~----~-------~-~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 76 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE----R-------K-N-IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT----T-------T-C-CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEET
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh----C-------C-C-CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeC
Confidence 3578899999999888887754432 1 1 1 1239999999999999999999987 345677777
Q ss_pred cccCChHHHHHHHHH----c----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 260 SSVEGNKHLRKVLIA----T----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 260 ~~~~~~~~l~~l~~~----~----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
+...+...++..+.. . ..+.|++|||+|.+.. ....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------------------------------~~~~ 120 (319)
T 2chq_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------------------------------DAQA 120 (319)
T ss_dssp TSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------------------------------HHHH
T ss_pred ccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------------------------------HHHH
Confidence 654333333332221 1 3478999999997642 1122
Q ss_pred hHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHHH-HHHH
Q 040638 332 GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSEV-EELI 407 (419)
Q Consensus 332 ~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i-~~l~ 407 (419)
.|+..++.. ....++|++||.++.+++++.+ |+. .+.++.++.++...++..++...+..+.++. +.+.
T Consensus 121 ~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~ 190 (319)
T 2chq_A 121 ALRRTMEMY----SKSCRFILSCNYVSRIIEPIQS--RCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALI 190 (319)
T ss_dssp TTGGGTSSS----SSSEEEEEEESCGGGSCHHHHT--TCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHH
T ss_pred HHHHHHHhc----CCCCeEEEEeCChhhcchHHHh--hCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344555443 3457889999999999999999 775 7999999999999999998877665555443 3344
No 49
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.58 E-value=1e-14 Score=142.18 Aligned_cols=174 Identities=14% Similarity=0.209 Sum_probs=110.7
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecc
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSS 261 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~ 261 (419)
+.+..+|++++..+...... ..+......+. ...++++||||||||||++++++++.+ +.+++.+++..
T Consensus 4 l~~~~~f~~fv~g~~~~~a~-~~~~~~~~~~~-------~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 4 LNPKYTLENFIVGEGNRLAY-EVVKEALENLG-------SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CCTTCCSSSCCCCTTTHHHH-HHHHHHHHTTT-------TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCCCcccCCCCCcHHHHH-HHHHHHHhCcC-------CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 34455899987322222222 22333333221 124579999999999999999999999 88999888765
Q ss_pred cCCh-------HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHH
Q 040638 262 VEGN-------KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLL 334 (419)
Q Consensus 262 ~~~~-------~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll 334 (419)
+... ..+..+......+.||+|||+|.+... ..+...++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~----------------------------------~~~~~~l~ 121 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK----------------------------------ERTQIEFF 121 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC----------------------------------HHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC----------------------------------hHHHHHHH
Confidence 4210 001112222345899999999987430 01112233
Q ss_pred HHhcCcccCCCCCEEEEEecCCCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHHH
Q 040638 335 NFTNGLWSSSGDERIIVFTTNHKD---RLDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVEE 405 (419)
Q Consensus 335 ~~ldg~~s~~g~~~iiV~tTN~~~---~LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~~ 405 (419)
..++..... +.++|+.++|.+. .++++|.+ ||+ ..++++. +.+++..+++.++......+.++...
T Consensus 122 ~~l~~~~~~--~~~iii~~~~~~~~l~~l~~~L~s--R~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~ 192 (324)
T 1l8q_A 122 HIFNTLYLL--EKQIILASDRHPQKLDGVSDRLVS--RFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVID 192 (324)
T ss_dssp HHHHHHHHT--TCEEEEEESSCGGGCTTSCHHHHH--HHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHC--CCeEEEEecCChHHHHHhhhHhhh--cccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 444433221 2356666666665 68999998 886 7899999 99999999999987655556555443
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.57 E-value=2.1e-15 Score=139.32 Aligned_cols=170 Identities=14% Similarity=0.168 Sum_probs=108.0
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecc
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSS 261 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~ 261 (419)
+.++.+|+++++.+. .+.+++.+......+ ..++++|+||||||||++++++|+.+. ..+..+++..
T Consensus 21 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 21 LPDDETFTSYYPAAG-NDELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp CCTTCSTTTSCC--C-CHHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCCCChhhccCCCC-CHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 344569999987322 233444454444321 246799999999999999999999874 6778887766
Q ss_pred cCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc
Q 040638 262 VEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW 341 (419)
Q Consensus 262 ~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~ 341 (419)
+.. .+...+.....+.+|+|||+|.+... ......|+..++...
T Consensus 91 ~~~--~~~~~~~~~~~~~vliiDe~~~~~~~----------------------------------~~~~~~l~~~l~~~~ 134 (242)
T 3bos_A 91 HAS--ISTALLEGLEQFDLICIDDVDAVAGH----------------------------------PLWEEAIFDLYNRVA 134 (242)
T ss_dssp GGG--SCGGGGTTGGGSSEEEEETGGGGTTC----------------------------------HHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHhccCCCEEEEeccccccCC----------------------------------HHHHHHHHHHHHHHH
Confidence 532 12222333456899999999976430 001122344444332
Q ss_pred cCCCCCEEEEEecC-CCC---CCCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHHHH
Q 040638 342 SSSGDERIIVFTTN-HKD---RLDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSEVE 404 (419)
Q Consensus 342 s~~g~~~iiV~tTN-~~~---~LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~i~ 404 (419)
.. +...+|+||| .++ .+++++.+ |+. ..++++.|+.+++.+++..++...+..+.++..
T Consensus 135 ~~--~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 199 (242)
T 3bos_A 135 EQ--KRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVG 199 (242)
T ss_dssp HH--CSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHH
T ss_pred Hc--CCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 21 1222445554 444 45688988 775 899999999999999999998755555555443
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.57 E-value=1.4e-14 Score=142.13 Aligned_cols=167 Identities=16% Similarity=0.161 Sum_probs=118.0
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC------C
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH------F 252 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~------~ 252 (419)
.|.. ...|.+|++++|.+++++.+...+. .. . ..++||+||||||||++++++|+.++ .
T Consensus 26 ~~~~--k~~p~~~~~i~g~~~~~~~l~~~l~----~~--------~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 26 PWVE--KYRPKNLDEVTAQDHAVTVLKKTLK----SA--------N-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp CHHH--HTCCSSTTTCCSCCTTHHHHHHHTT----CT--------T-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHH--hcCCCCHHHhhCCHHHHHHHHHHHh----cC--------C-CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 4544 3478899999999998887755432 11 1 12499999999999999999999864 4
Q ss_pred cEEEEEecccCChHHHHHHH---HHc---------------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 253 DVYDLELSSVEGNKHLRKVL---IAT---------------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 253 ~v~~l~l~~~~~~~~l~~l~---~~~---------------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
.+..++++.......++..+ ... ..+.||+|||+|.+..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~----------------------- 147 (353)
T 1sxj_D 91 RILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA----------------------- 147 (353)
T ss_dssp SEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH-----------------------
T ss_pred ceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH-----------------------
Confidence 57777776644433443322 111 2456999999997642
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.....|+..++... ....+|++||+++.++|++.+ |+. .+.++.++.++...++...+..
T Consensus 148 -------------~~~~~Ll~~le~~~----~~~~~il~~~~~~~l~~~l~s--R~~-~i~~~~~~~~~~~~~l~~~~~~ 207 (353)
T 1sxj_D 148 -------------DAQSALRRTMETYS----GVTRFCLICNYVTRIIDPLAS--QCS-KFRFKALDASNAIDRLRFISEQ 207 (353)
T ss_dssp -------------HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHH--HSE-EEECCCCCHHHHHHHHHHHHHT
T ss_pred -------------HHHHHHHHHHHhcC----CCceEEEEeCchhhCcchhhc--cCc-eEEeCCCCHHHHHHHHHHHHHH
Confidence 12234555555442 235677889999999999998 875 7999999999999999998876
Q ss_pred CCCCChHHH
Q 040638 395 TEHPLFSEV 403 (419)
Q Consensus 395 ~~~~l~~~i 403 (419)
....+.++.
T Consensus 208 ~~~~i~~~~ 216 (353)
T 1sxj_D 208 ENVKCDDGV 216 (353)
T ss_dssp TTCCCCHHH
T ss_pred hCCCCCHHH
Confidence 655555443
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.56 E-value=1.7e-14 Score=139.68 Aligned_cols=166 Identities=16% Similarity=0.193 Sum_probs=116.7
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC-----Cc
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH-----FD 253 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~-----~~ 253 (419)
.|.. ...|.+|++++|.++.++.+...+.. | . ...+||+||||||||++++++|+.+. ..
T Consensus 14 ~~~~--k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~ 78 (327)
T 1iqp_A 14 PWVE--KYRPQRLDDIVGQEHIVKRLKHYVKT-----------G-S-MPHLLFAGPPGVGKTTAALALARELFGENWRHN 78 (327)
T ss_dssp CHHH--HTCCCSTTTCCSCHHHHHHHHHHHHH-----------T-C-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHH
T ss_pred chhh--ccCCCCHHHhhCCHHHHHHHHHHHHc-----------C-C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCc
Confidence 4543 35788999999999888887665532 1 1 12499999999999999999999873 34
Q ss_pred EEEEEecccCChHHHHHHHHH---c-----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 254 VYDLELSSVEGNKHLRKVLIA---T-----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 254 v~~l~l~~~~~~~~l~~l~~~---~-----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
+..++++...+...++..+.. . ..+.|++|||+|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~---------------------------------- 124 (327)
T 1iqp_A 79 FLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQ---------------------------------- 124 (327)
T ss_dssp EEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH----------------------------------
T ss_pred eEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH----------------------------------
Confidence 666766543222223322211 1 3578999999997632
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE 402 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 402 (419)
.....|+..++.. .....+|++||.++.+++++.+ |+. .+.++.++.++...++..++...+..+.++
T Consensus 125 --~~~~~L~~~le~~----~~~~~~i~~~~~~~~l~~~l~s--r~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 192 (327)
T 1iqp_A 125 --DAQQALRRTMEMF----SSNVRFILSCNYSSKIIEPIQS--RCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEE 192 (327)
T ss_dssp --HHHHHHHHHHHHT----TTTEEEEEEESCGGGSCHHHHH--TEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHH
T ss_pred --HHHHHHHHHHHhc----CCCCeEEEEeCCccccCHHHHh--hCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHH
Confidence 1223355555543 2347788899999999999998 775 799999999999999999887655544443
No 53
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.56 E-value=4.9e-14 Score=139.30 Aligned_cols=169 Identities=15% Similarity=0.215 Sum_probs=119.7
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF------------- 252 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~------------- 252 (419)
..|.+|++++|.++.++.+...+... ..+..+||+||||||||++++++|+.++.
T Consensus 10 ~rp~~~~~~vg~~~~~~~L~~~l~~~------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~ 77 (373)
T 1jr3_A 10 WRPQTFADVVGQEHVLTALANGLSLG------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCD 77 (373)
T ss_dssp TCCCSTTTSCSCHHHHHHHHHHHHHT------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSH
T ss_pred hCCCchhhccCcHHHHHHHHHHHHhC------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccH
Confidence 46889999999998888777655321 22456999999999999999999998854
Q ss_pred -----------cEEEEEecccCChHHHHHHHHHcc------CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHH
Q 040638 253 -----------DVYDLELSSVEGNKHLRKVLIATE------NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLML 315 (419)
Q Consensus 253 -----------~v~~l~l~~~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (419)
+++.++...-.....++.++.... .+.|++|||+|.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------------------ 133 (373)
T 1jr3_A 78 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------------------ 133 (373)
T ss_dssp HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------------------
T ss_pred HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcH------------------------
Confidence 344444332222334666665542 368999999997632
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 316 QIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 316 ~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
.....|+..++.. ....++|++||.+..+++++.+ |+ ..++++.++.++...+++.++...
T Consensus 134 ------------~~~~~Ll~~le~~----~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~l~~~~~~~~l~~~~~~~ 194 (373)
T 1jr3_A 134 ------------HSFNALLKTLEEP----PEHVKFLLATTDPQKLPVTILS--RC-LQFHLKALDVEQIRHQLEHILNEE 194 (373)
T ss_dssp ------------HHHHHHHHHHHSC----CSSEEEEEEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHhcC----CCceEEEEEeCChHhCcHHHHh--he-eEeeCCCCCHHHHHHHHHHHHHHc
Confidence 1233456666654 3458889999999999999998 76 789999999999999999888654
Q ss_pred CCCChHH-HHHHHhc
Q 040638 396 EHPLFSE-VEELIEQ 409 (419)
Q Consensus 396 ~~~l~~~-i~~l~~~ 409 (419)
+..+.++ ++.+.+.
T Consensus 195 ~~~~~~~a~~~l~~~ 209 (373)
T 1jr3_A 195 HIAHEPRALQLLARA 209 (373)
T ss_dssp TCCBCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 4444333 3334443
No 54
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.56 E-value=8.2e-14 Score=138.65 Aligned_cols=172 Identities=20% Similarity=0.279 Sum_probs=110.5
Q ss_pred ccccchhhHHHHHHHHHHHhhchhh------------------hhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDY------------------YRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~------------------~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
.++|.+++|+.|...+..++.+... +... ...+.++||+||||||||++++++|+.++.++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~-~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEV-ELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHT-TCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccccccccccc-ccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4789999999998877544433221 0111 12355799999999999999999999999999
Q ss_pred EEEEecccCC--------hHHHHHHHHHc------cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHH
Q 040638 255 YDLELSSVEG--------NKHLRKVLIAT------ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNL 320 (419)
Q Consensus 255 ~~l~l~~~~~--------~~~l~~l~~~~------~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (419)
+.+++..+.. ...+..++... ..++|++|||+|.+...+........
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~------------------- 161 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRD------------------- 161 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC-------------------------------
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecc-------------------
Confidence 9999877631 22344554432 36799999999988652111100000
Q ss_pred HHHHHHHHHHHhHHHHhcCccc---C--------------CCCCEEEEEecCC---------------------------
Q 040638 321 ILFVERILETFGLLNFTNGLWS---S--------------SGDERIIVFTTNH--------------------------- 356 (419)
Q Consensus 321 ~~~~~~~~~ls~Ll~~ldg~~s---~--------------~g~~~iiV~tTN~--------------------------- 356 (419)
.........|+..||+..- . ...++++|+|||.
T Consensus 162 ---~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~ 238 (376)
T 1um8_A 162 ---VSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKE 238 (376)
T ss_dssp -----CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTT
T ss_pred ---cchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccc
Confidence 0012345667788875410 0 0123567777762
Q ss_pred --------------CCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 040638 357 --------------KDRLDPALLRPGRMDVHIHMSYCTLCGFKILAS 389 (419)
Q Consensus 357 --------------~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~ 389 (419)
...+.|+|+. |++..+.++.++.++...++.
T Consensus 239 ~~~~~~~~~~~~l~~~~~~p~l~~--R~~~~i~~~~l~~~~l~~i~~ 283 (376)
T 1um8_A 239 QEAILHLVQTHDLVTYGLIPELIG--RLPVLSTLDSISLEAMVDILQ 283 (376)
T ss_dssp TTTSGGGCCHHHHHHTTCCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred hhHHHhhcCHHHHhhcCCChHHhc--CCCceeeccCCCHHHHHHHHh
Confidence 1125566776 999999999999999999987
No 55
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.55 E-value=1.9e-13 Score=134.01 Aligned_cols=183 Identities=18% Similarity=0.218 Sum_probs=122.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN 265 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~ 265 (419)
-.|.+|+.++|.+.+++.+...+...... | .....++|+||||||||||++++|+.++.++...+.......
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~-------~-~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~ 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMR-------G-EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHH-------T-CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhc-------C-CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCH
Confidence 46789999999877776664444322111 1 123569999999999999999999999988776666555555
Q ss_pred HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc----
Q 040638 266 KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---- 341 (419)
Q Consensus 266 ~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---- 341 (419)
..+..++.....+.|++|||++.+... . .. .|+..+....
T Consensus 91 ~~l~~~~~~~~~~~v~~iDE~~~l~~~---~------------------------------~e---~L~~~~~~~~~~i~ 134 (334)
T 1in4_A 91 GDMAAILTSLERGDVLFIDEIHRLNKA---V------------------------------EE---LLYSAIEDFQIDIM 134 (334)
T ss_dssp HHHHHHHHHCCTTCEEEEETGGGCCHH---H------------------------------HH---HHHHHHHTSCCCC-
T ss_pred HHHHHHHHHccCCCEEEEcchhhcCHH---H------------------------------HH---HHHHHHHhccccee
Confidence 667766666667889999999977430 0 00 0111111100
Q ss_pred --cC--------CCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH-HHHHHhcC
Q 040638 342 --SS--------SGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE-VEELIEQT 410 (419)
Q Consensus 342 --s~--------~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~-i~~l~~~~ 410 (419)
.. .-....++.+||++..|++++++ ||...+.+++++.+++..+++.........+.++ +..+.+..
T Consensus 135 ~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~ 212 (334)
T 1in4_A 135 IGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRS 212 (334)
T ss_dssp --------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTS
T ss_pred eccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhc
Confidence 00 00124567799999999999999 9999999999999999999998775443334333 33344433
Q ss_pred CCCc
Q 040638 411 KVTP 414 (419)
Q Consensus 411 ~~tp 414 (419)
+-+|
T Consensus 213 ~G~~ 216 (334)
T 1in4_A 213 RGTP 216 (334)
T ss_dssp TTCH
T ss_pred CCCh
Confidence 3333
No 56
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.54 E-value=3.3e-14 Score=137.51 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=115.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEec
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELS 260 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~ 260 (419)
..|.+|++++|.++.++.+...+.. + ..+. ++|+||||+|||++++++|+.+ +.++..++.+
T Consensus 15 ~~p~~~~~~~g~~~~~~~l~~~l~~-----------~-~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 81 (323)
T 1sxj_B 15 YRPQVLSDIVGNKETIDRLQQIAKD-----------G-NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNAS 81 (323)
T ss_dssp TCCSSGGGCCSCTHHHHHHHHHHHS-----------C-CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTT
T ss_pred cCCCCHHHHHCCHHHHHHHHHHHHc-----------C-CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCc
Confidence 5688999999999888877665421 1 1233 9999999999999999999986 3456777665
Q ss_pred ccCChHHHHHHHHHc--------c-CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 261 SVEGNKHLRKVLIAT--------E-NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 261 ~~~~~~~l~~l~~~~--------~-~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
...+...++.++... . .+.|++|||+|.+.. ....
T Consensus 82 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------------------------------~~~~ 125 (323)
T 1sxj_B 82 DDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------------------------------GAQQ 125 (323)
T ss_dssp SCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------------------------------HHHH
T ss_pred cccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------------------------------HHHH
Confidence 543445555554321 2 378999999997642 1122
Q ss_pred hHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChH
Q 040638 332 GLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFS 401 (419)
Q Consensus 332 ~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~ 401 (419)
.|+..++.. ....++|++||.++.+++++.+ |+. .++++.++.++...++..++...+..+.+
T Consensus 126 ~L~~~le~~----~~~~~~il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~ 188 (323)
T 1sxj_B 126 ALRRTMELY----SNSTRFAFACNQSNKIIEPLQS--QCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTN 188 (323)
T ss_dssp TTHHHHHHT----TTTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCH
T ss_pred HHHHHHhcc----CCCceEEEEeCChhhchhHHHh--hce-EEeecCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 345555443 2457788899999999999998 764 89999999999999999887654444433
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.52 E-value=7.9e-14 Score=136.69 Aligned_cols=153 Identities=21% Similarity=0.247 Sum_probs=98.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc------------
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD------------ 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~------------ 253 (419)
..|.+|++++|.+++++.+...+ . . +...++||+||||||||++++++|+.++..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~---~-~---------~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~ 84 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA---V-D---------PGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPN 84 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---H-C---------GGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSS
T ss_pred CCCCCchhccChHHHHHHHHHHh---h-C---------CCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccc
Confidence 35668999999988776542221 1 1 113469999999999999999999998631
Q ss_pred ---------------------EEEEEecccCChHHH------HHHHHHc-----------cCCeEEEEecCcccccccch
Q 040638 254 ---------------------VYDLELSSVEGNKHL------RKVLIAT-----------ENKSILVVEDIDCCTELQDR 295 (419)
Q Consensus 254 ---------------------v~~l~l~~~~~~~~l------~~l~~~~-----------~~~sIlviddiD~~~~~~~~ 295 (419)
++.+..+. ....+ ...+... ..++|++|||||.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~---- 158 (350)
T 1g8p_A 85 VEMIPDWATVLSTNVIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLED---- 158 (350)
T ss_dssp GGGSCTTCCCSCCCEEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH----
T ss_pred cccccchhhhhccccccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH----
Confidence 11111110 11111 2222111 2478999999997642
Q ss_pred hhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc---ccCCC------CCEEEEEecCCCC-CCCcccc
Q 040638 296 SAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL---WSSSG------DERIIVFTTNHKD-RLDPALL 365 (419)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~---~s~~g------~~~iiV~tTN~~~-~LdpALl 365 (419)
..+..|+..++.- ....| ...++|+|||..+ .++++|+
T Consensus 159 --------------------------------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~ 206 (350)
T 1g8p_A 159 --------------------------------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLL 206 (350)
T ss_dssp --------------------------------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHH
T ss_pred --------------------------------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHH
Confidence 1222344444431 11111 2578889999755 8999999
Q ss_pred CCCCcceEEEeCCC-CHHHHHHHHHHh
Q 040638 366 RPGRMDVHIHMSYC-TLCGFKILASNY 391 (419)
Q Consensus 366 rpGR~d~~I~~~~~-~~~~~~~l~~~~ 391 (419)
+ ||+.++++++| +.+.+..|++..
T Consensus 207 ~--R~~~~~~l~~~~~~~~~~~il~~~ 231 (350)
T 1g8p_A 207 D--RFGLSVEVLSPRDVETRVEVIRRR 231 (350)
T ss_dssp T--TCSEEEECCCCCSHHHHHHHHHHH
T ss_pred h--hcceEEEcCCCCcHHHHHHHHHHH
Confidence 9 99999999999 677777888764
No 58
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.52 E-value=2.4e-14 Score=141.68 Aligned_cols=160 Identities=15% Similarity=0.125 Sum_probs=110.1
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---------CCcEEEEEec
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---------HFDVYDLELS 260 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---------~~~v~~l~l~ 260 (419)
.+++++|.++..+.+...+...+. ...+++++|+||||||||++++++++.+ +..++.+++.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~---------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALR---------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTS---------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHc---------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 458899988888877665533221 1235679999999999999999999998 7778888876
Q ss_pred ccCCh----------------------HH-HHHHHHH---ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 261 SVEGN----------------------KH-LRKVLIA---TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 261 ~~~~~----------------------~~-l~~l~~~---~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
...+. .. +..++.. ...++||+|||+|.+.... .
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~----------------- 147 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---G----------------- 147 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---T-----------------
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---C-----------------
Confidence 54321 12 2222222 2347799999999774310 0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCcce-EEEeCCCCHHHHHHHHHH
Q 040638 315 LQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRMDV-HIHMSYCTLCGFKILASN 390 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~d~-~I~~~~~~~~~~~~l~~~ 390 (419)
....+..+++.++.... +....+|++||.+ +.+++++.+ ||.. .|+++.++.++...+++.
T Consensus 148 -----------~~~~l~~l~~~~~~~~~--~~~~~~I~~t~~~~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~ 212 (387)
T 2v1u_A 148 -----------GQDLLYRITRINQELGD--RVWVSLVGITNSLGFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILET 212 (387)
T ss_dssp -----------HHHHHHHHHHGGGCC-------CEEEEECSCSTTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHH
T ss_pred -----------CChHHHhHhhchhhcCC--CceEEEEEEECCCchHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHH
Confidence 12344445555443310 2357888999987 788999998 8876 899999999999999998
Q ss_pred hhC
Q 040638 391 YLG 393 (419)
Q Consensus 391 ~l~ 393 (419)
.+.
T Consensus 213 ~~~ 215 (387)
T 2v1u_A 213 RAE 215 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.51 E-value=8.9e-14 Score=137.95 Aligned_cols=151 Identities=17% Similarity=0.227 Sum_probs=108.8
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----------CCcEEEEEec
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----------HFDVYDLELS 260 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----------~~~v~~l~l~ 260 (419)
++++|.++..+.+.+.+...... ..+++++|+||||||||++++++++.+ +..++.+++.
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~---------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 90 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN---------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCR 90 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT---------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC---------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECc
Confidence 78999999999888877665533 224579999999999999999999998 8888888875
Q ss_pred ccC-Ch------------------------HHHHHHHHHcc-CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHH
Q 040638 261 SVE-GN------------------------KHLRKVLIATE-NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLM 314 (419)
Q Consensus 261 ~~~-~~------------------------~~l~~l~~~~~-~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (419)
... +. ..+..++.... .+.||+|||+|.+.... .
T Consensus 91 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~---~----------------- 150 (384)
T 2qby_B 91 EVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRR---G----------------- 150 (384)
T ss_dssp HHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHST---T-----------------
T ss_pred cCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCC---C-----------------
Confidence 543 11 11222222222 23499999999774310 0
Q ss_pred HHHHHHHHHHHHHHH-HHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 315 LQIRNLILFVERILE-TFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 315 ~~~~~~~~~~~~~~~-ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
... +..|+... ....+|+|||.+ +.+++++.+ ||+..|+++.++.++...+++.
T Consensus 151 ------------~~~~l~~l~~~~--------~~~~iI~~t~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~ 208 (384)
T 2qby_B 151 ------------GDIVLYQLLRSD--------ANISVIMISNDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSK 208 (384)
T ss_dssp ------------SHHHHHHHHTSS--------SCEEEEEECSSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHH
T ss_pred ------------CceeHHHHhcCC--------cceEEEEEECCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHH
Confidence 011 22232221 347888999987 789999998 8888999999999999999999
Q ss_pred hhC
Q 040638 391 YLG 393 (419)
Q Consensus 391 ~l~ 393 (419)
++.
T Consensus 209 ~~~ 211 (384)
T 2qby_B 209 YAE 211 (384)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.50 E-value=1.1e-14 Score=129.01 Aligned_cols=145 Identities=19% Similarity=0.206 Sum_probs=96.2
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|.+|++++|.++..+.+.+.+.. ..+++++|+||||||||++++++|+.+ +..++.
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~-------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~ 83 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSR-------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVS 83 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhC-------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEE
Confidence 477899999988877777654421 225579999999999999999999987 677777
Q ss_pred EEecccC----C----hHHHHHHHHH---ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 257 LELSSVE----G----NKHLRKVLIA---TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 257 l~l~~~~----~----~~~l~~l~~~---~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
+++..+. . ...+..++.. ...+.+|+|||+|.+......... . .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~-~-~----------------------- 138 (187)
T 2p65_A 84 LDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEG-A-L----------------------- 138 (187)
T ss_dssp ECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTT-S-C-----------------------
T ss_pred EeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhccccccccc-c-h-----------------------
Confidence 7765431 1 1234444433 245789999999988642110000 0 0
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCC
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCT 380 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~ 380 (419)
.....|...++. +..++|++||.++ .+|+++++ ||+. |+++.|+
T Consensus 139 --~~~~~l~~~~~~------~~~~ii~~~~~~~~~~~~~~~~~l~~--R~~~-i~i~~p~ 187 (187)
T 2p65_A 139 --DAGNILKPMLAR------GELRCIGATTVSEYRQFIEKDKALER--RFQQ-ILVEQPS 187 (187)
T ss_dssp --CTHHHHHHHHHT------TCSCEEEEECHHHHHHHTTTCHHHHH--HEEE-EECCSCC
T ss_pred --HHHHHHHHHHhc------CCeeEEEecCHHHHHHHHhccHHHHH--hcCc-ccCCCCC
Confidence 011112222322 3467888888765 68999999 9985 9999885
No 61
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=1.4e-13 Score=135.28 Aligned_cols=159 Identities=10% Similarity=0.142 Sum_probs=105.7
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-CCc----------
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-HFD---------- 253 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-~~~---------- 253 (419)
..+|.+|++++|.+++++.+...+. .. | ..+. ++|+|||||||||+++++|+.+ +.+
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~---~~-------~-~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~ 74 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD---QP-------R-DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQ 74 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT---CT-------T-CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh---hC-------C-CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEeccee
Confidence 3478999999999887766643320 11 1 2233 9999999999999999999954 321
Q ss_pred ------------------EEEEEecccC--ChHHHHHHHHH----------------ccCCeEEEEecCcccccccchhh
Q 040638 254 ------------------VYDLELSSVE--GNKHLRKVLIA----------------TENKSILVVEDIDCCTELQDRSA 297 (419)
Q Consensus 254 ------------------v~~l~l~~~~--~~~~l~~l~~~----------------~~~~sIlviddiD~~~~~~~~~~ 297 (419)
+..+..+... ....+++.+.. ...+.|++|||+|.+ +
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L-~------ 147 (354)
T 1sxj_E 75 FVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL-T------ 147 (354)
T ss_dssp -----------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-C------
T ss_pred ecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-C------
Confidence 2222222111 11134444432 225679999999974 2
Q ss_pred hccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeC
Q 040638 298 QARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMS 377 (419)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~ 377 (419)
......|+..++... ....+|++||.++.+.|++.+ |+ ..+.++
T Consensus 148 -----------------------------~~~~~~L~~~le~~~----~~~~~Il~t~~~~~l~~~l~s--R~-~~~~~~ 191 (354)
T 1sxj_E 148 -----------------------------KDAQAALRRTMEKYS----KNIRLIMVCDSMSPIIAPIKS--QC-LLIRCP 191 (354)
T ss_dssp -----------------------------HHHHHHHHHHHHHST----TTEEEEEEESCSCSSCHHHHT--TS-EEEECC
T ss_pred -----------------------------HHHHHHHHHHHHhhc----CCCEEEEEeCCHHHHHHHHHh--hc-eEEecC
Confidence 112233555555442 347889999999999999998 87 889999
Q ss_pred CCCHHHHHHHHHHhhCCCCCC
Q 040638 378 YCTLCGFKILASNYLGITEHP 398 (419)
Q Consensus 378 ~~~~~~~~~l~~~~l~~~~~~ 398 (419)
.|+.++...+++..+..++..
T Consensus 192 ~~~~~~~~~~l~~~~~~~~~~ 212 (354)
T 1sxj_E 192 APSDSEISTILSDVVTNERIQ 212 (354)
T ss_dssp CCCHHHHHHHHHHHHHHHTCE
T ss_pred CcCHHHHHHHHHHHHHHcCCC
Confidence 999999999999887654433
No 62
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.50 E-value=4.4e-14 Score=143.78 Aligned_cols=166 Identities=17% Similarity=0.234 Sum_probs=105.0
Q ss_pred CCCCccccc-cchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEec
Q 040638 187 HPSTFDTLA-MVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELS 260 (419)
Q Consensus 187 ~p~~f~~l~-g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~ 260 (419)
+..+|++++ |..... ....+......+ +. ..+++||||||||||+|++++|+.+ +..++.+++.
T Consensus 100 ~~~tfd~fv~g~~n~~--a~~~~~~~a~~~------~~--~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~ 169 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSF--AYHAALEVAKHP------GR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE 169 (440)
T ss_dssp TTCSGGGCCCCTTTHH--HHHHHHHHHHST------TS--SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH
T ss_pred CCCChhhcCCCCchHH--HHHHHHHHHhCC------CC--CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH
Confidence 334899987 533322 223333333332 11 4579999999999999999999998 7888888775
Q ss_pred ccCChHHHH---------HHHHHcc-CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 261 SVEGNKHLR---------KVLIATE-NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 261 ~~~~~~~l~---------~l~~~~~-~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
.+. ..+. .+..... .+.||+|||+|.+... ..+.
T Consensus 170 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~----------------------------------~~~q 213 (440)
T 2z4s_A 170 KFL--NDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK----------------------------------TGVQ 213 (440)
T ss_dssp HHH--HHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC----------------------------------HHHH
T ss_pred HHH--HHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC----------------------------------hHHH
Confidence 541 1111 1222234 7899999999987541 0112
Q ss_pred HhHHHHhcCcccCCCCCEEEEEecCCCCC---CCccccCCCCcc--eEEEeCCCCHHHHHHHHHHhhCCCCCCChHH
Q 040638 331 FGLLNFTNGLWSSSGDERIIVFTTNHKDR---LDPALLRPGRMD--VHIHMSYCTLCGFKILASNYLGITEHPLFSE 402 (419)
Q Consensus 331 s~Ll~~ldg~~s~~g~~~iiV~tTN~~~~---LdpALlrpGR~d--~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 402 (419)
..|+..++.+... +..+||.|.+.+.. ++++|++ ||+ ..+.++.|+.+++..+++..+...+..+.++
T Consensus 214 ~~l~~~l~~l~~~--~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e 286 (440)
T 2z4s_A 214 TELFHTFNELHDS--GKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEE 286 (440)
T ss_dssp HHHHHHHHHHHTT--TCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTT
T ss_pred HHHHHHHHHHHHC--CCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 2244444433221 23444444444554 8899999 886 7899999999999999999886444334333
No 63
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.49 E-value=7.7e-14 Score=143.07 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=104.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEE
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVY 255 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~ 255 (419)
-.|..|+.++|.++..+.+++.+.. ..+.++||+||||||||++++++|..+ +..++
T Consensus 174 ~r~~~ld~iiGr~~~i~~l~~~l~r-------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~ 240 (468)
T 3pxg_A 174 AKEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM 240 (468)
T ss_dssp TTSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEE
T ss_pred HhcCCCCCccCcHHHHHHHHHHHhc-------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEE
Confidence 3577899999998888877665532 224579999999999999999999997 77788
Q ss_pred EEEeccc-C--ChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHH
Q 040638 256 DLELSSV-E--GNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILET 330 (419)
Q Consensus 256 ~l~l~~~-~--~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 330 (419)
.++++.- . ....++.++... ..++||||| .. ....
T Consensus 241 ~l~~~~~~~g~~e~~~~~~~~~~~~~~~~iLfiD-----~~-----------------------------------~~a~ 280 (468)
T 3pxg_A 241 TLDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-----------------------------------IDAS 280 (468)
T ss_dssp CC----------CTTHHHHHHHHHTCCCCEEEEC-----C----------------------------------------
T ss_pred EeeCCccccchHHHHHHHHHHHHHhcCCeEEEEe-----Cc-----------------------------------hhHH
Confidence 8777521 1 124566777554 358899999 00 0000
Q ss_pred HhHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 331 FGLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 331 s~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
..|+..++ .++..+|++||.++ .+|++|.| ||.. |.+++|+.+++..|++.++..
T Consensus 281 ~~L~~~L~------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~~-i~v~~p~~e~~~~iL~~~~~~ 340 (468)
T 3pxg_A 281 NILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQP-IQVDQPSVDESIQILQGLRDR 340 (468)
T ss_dssp ---CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEEE-EECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHhhc------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCcc-ceeCCCCHHHHHHHHHHHHHH
Confidence 11222221 24688999999887 69999999 9985 999999999999999998875
No 64
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=3.4e-13 Score=132.33 Aligned_cols=166 Identities=20% Similarity=0.271 Sum_probs=114.0
Q ss_pred CceeeeccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCC-----c
Q 040638 179 TWQSAILDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHF-----D 253 (419)
Q Consensus 179 ~w~~~~~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~-----~ 253 (419)
.|.. ...|.+|++++|.+++++.+...+. . | ..+. ++|+|||||||||+++++|+.+.. .
T Consensus 14 ~~~~--k~rp~~~~~~~g~~~~~~~L~~~i~----~-------g-~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~ 78 (340)
T 1sxj_C 14 PWVE--KYRPETLDEVYGQNEVITTVRKFVD----E-------G-KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNM 78 (340)
T ss_dssp CHHH--HTCCSSGGGCCSCHHHHHHHHHHHH----T-------T-CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHH
T ss_pred chHH--HhCCCcHHHhcCcHHHHHHHHHHHh----c-------C-CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccce
Confidence 4544 3578999999998877776654432 1 1 1222 999999999999999999998743 3
Q ss_pred EEEEEecccCChHHHHHHHHH---c-----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 254 VYDLELSSVEGNKHLRKVLIA---T-----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 254 v~~l~l~~~~~~~~l~~l~~~---~-----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
+..++.+...+...+++.+.. . ..+.|++|||+|.+..
T Consensus 79 ~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~---------------------------------- 124 (340)
T 1sxj_C 79 VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN---------------------------------- 124 (340)
T ss_dssp EEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH----------------------------------
T ss_pred EEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH----------------------------------
Confidence 556655543334445443322 1 2368999999997632
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE 402 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 402 (419)
.....|+..++... ....+|++||.+..+.|++++ |+. .+.++.++.++....+...+..+...+.++
T Consensus 125 --~~~~~L~~~le~~~----~~~~~il~~n~~~~i~~~i~s--R~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~ 192 (340)
T 1sxj_C 125 --AAQNALRRVIERYT----KNTRFCVLANYAHKLTPALLS--QCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPN 192 (340)
T ss_dssp --HHHHHHHHHHHHTT----TTEEEEEEESCGGGSCHHHHT--TSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHH
T ss_pred --HHHHHHHHHHhcCC----CCeEEEEEecCccccchhHHh--hce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 11223555555442 346788899999999999999 875 789999999999999988885554444443
No 65
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.47 E-value=9.4e-14 Score=152.43 Aligned_cols=157 Identities=17% Similarity=0.207 Sum_probs=104.1
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|.+|+.++|.++..+.+++.+.. ..+++++|+||||||||++++++|+.+ +..++.
T Consensus 165 r~~~ld~viGr~~~i~~l~~~l~~-------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~ 231 (854)
T 1qvr_A 165 AEGKLDPVIGRDEEIRRVIQILLR-------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVS 231 (854)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHHC-------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEE
T ss_pred hcCCCcccCCcHHHHHHHHHHHhc-------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEE
Confidence 477899999998777777664421 235679999999999999999999998 788998
Q ss_pred EEecccCC--------hHHHHHHHHHc---cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHH
Q 040638 257 LELSSVEG--------NKHLRKVLIAT---ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVE 325 (419)
Q Consensus 257 l~l~~~~~--------~~~l~~l~~~~---~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (419)
++++.+.. ...++.++... ..++||||||+|.+.+.....+.
T Consensus 232 l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~--------------------------- 284 (854)
T 1qvr_A 232 LQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGA--------------------------- 284 (854)
T ss_dssp ECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC---------------------------------------
T ss_pred eehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccch---------------------------
Confidence 88877631 23466666554 35789999999988652211100
Q ss_pred HHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 326 RILETFGLLNFTNGLWSSSGDERIIVFTTNHKD----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 326 ~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
......|...++. ++..+|++||.++ .+|++|.| ||+. |.++.|+.+++..|++.++.
T Consensus 285 -~~~~~~L~~~l~~------~~i~~I~at~~~~~~~~~~d~aL~r--Rf~~-i~l~~p~~~e~~~iL~~~~~ 346 (854)
T 1qvr_A 285 -VDAGNMLKPALAR------GELRLIGATTLDEYREIEKDPALER--RFQP-VYVDEPTVEETISILRGLKE 346 (854)
T ss_dssp --------HHHHHT------TCCCEEEEECHHHHHHHTTCTTTCS--CCCC-EEECCCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhC------CCeEEEEecCchHHhhhccCHHHHh--CCce-EEeCCCCHHHHHHHHHhhhh
Confidence 0011112222321 3466888888764 58999999 9986 99999999999999987664
No 66
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.46 E-value=3.8e-13 Score=130.60 Aligned_cols=129 Identities=10% Similarity=0.117 Sum_probs=92.4
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEEEEecccCC----------------------hHHHHHHH
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYDLELSSVEG----------------------NKHLRKVL 272 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~l~l~~~~~----------------------~~~l~~l~ 272 (419)
.+.+++||||||||||++++++++.+ ++.+..+++..+.+ ...++.+|
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f 123 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYI 123 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 35679999999999999999999999 35667777655421 23456666
Q ss_pred HHc----cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCE
Q 040638 273 IAT----ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDER 348 (419)
Q Consensus 273 ~~~----~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~ 348 (419)
... ..++|++|||+|.+.. +..+..|++... ......
T Consensus 124 ~~~~~~~~~~~ii~lDE~d~l~~-----------------------------------q~~L~~l~~~~~----~~~s~~ 164 (318)
T 3te6_A 124 TNVPKAKKRKTLILIQNPENLLS-----------------------------------EKILQYFEKWIS----SKNSKL 164 (318)
T ss_dssp HHSCGGGSCEEEEEEECCSSSCC-----------------------------------THHHHHHHHHHH----CSSCCE
T ss_pred HHhhhccCCceEEEEecHHHhhc-----------------------------------chHHHHHHhccc----ccCCcE
Confidence 653 3578999999998861 112223443322 123457
Q ss_pred EEEEecCCCCC----CCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhCC
Q 040638 349 IIVFTTNHKDR----LDPALLRPGRMD-VHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 349 iiV~tTN~~~~----LdpALlrpGR~d-~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
++|+++|..+. |++++.+ ||+ ..|.|+.++.++...|+++-+..
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~~ 213 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLKS 213 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccchhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHHh
Confidence 88899998875 3556666 887 68999999999999999998864
No 67
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=6.7e-13 Score=143.85 Aligned_cols=154 Identities=15% Similarity=0.214 Sum_probs=110.1
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCcc---ccC-ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCCh---
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKA---WKR-GYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGN--- 265 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~---~~r-G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~--- 265 (419)
.++|.++.++.|...+.... .|.. .+. .+||+||||||||++++++|+.++.+++.++++.+...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~--------~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMAR--------AGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV 530 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHH--------TTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHh--------cccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence 46677777777766554332 2221 122 49999999999999999999999999999998876321
Q ss_pred ----------------HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 266 ----------------KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 266 ----------------~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
..+...+.. ..++||+|||||.+- ...
T Consensus 531 ~~l~g~~~g~~g~~~~~~l~~~~~~-~~~~vl~lDEi~~~~------------------------------------~~~ 573 (758)
T 1r6b_X 531 SRLIGAPPGYVGFDQGGLLTDAVIK-HPHAVLLLDEIEKAH------------------------------------PDV 573 (758)
T ss_dssp SSSCCCCSCSHHHHHTTHHHHHHHH-CSSEEEEEETGGGSC------------------------------------HHH
T ss_pred hhhcCCCCCCcCccccchHHHHHHh-CCCcEEEEeCccccC------------------------------------HHH
Confidence 122333332 447999999999652 124
Q ss_pred HHhHHHHhcCcc-cCCC------CCEEEEEecCCCC-------------------------CCCccccCCCCcceEEEeC
Q 040638 330 TFGLLNFTNGLW-SSSG------DERIIVFTTNHKD-------------------------RLDPALLRPGRMDVHIHMS 377 (419)
Q Consensus 330 ls~Ll~~ldg~~-s~~g------~~~iiV~tTN~~~-------------------------~LdpALlrpGR~d~~I~~~ 377 (419)
+..|+..+|.-. ...+ ...++|+|||... .++|+|+. |||..|.|+
T Consensus 574 ~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--R~~~~i~~~ 651 (758)
T 1r6b_X 574 FNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRN--RLDNIIWFD 651 (758)
T ss_dssp HHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHT--TCSEEEECC
T ss_pred HHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHh--hCCcceeeC
Confidence 445666666321 1111 3478999999754 67889998 999999999
Q ss_pred CCCHHHHHHHHHHhhC
Q 040638 378 YCTLCGFKILASNYLG 393 (419)
Q Consensus 378 ~~~~~~~~~l~~~~l~ 393 (419)
.++.+++..|++.++.
T Consensus 652 ~l~~~~~~~i~~~~l~ 667 (758)
T 1r6b_X 652 HLSTDVIHQVVDKFIV 667 (758)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 9999999999999886
No 68
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.45 E-value=5.6e-13 Score=126.01 Aligned_cols=155 Identities=12% Similarity=0.117 Sum_probs=99.6
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~~ 266 (419)
+|++++|.....+.+++.+..... .+.++||+||||||||++++++++.+. .+++.++++.+....
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~-----------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP-----------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT-----------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 799999998888888877766532 245799999999999999999999885 678999988774221
Q ss_pred HHHHHHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHH
Q 040638 267 HLRKVLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILE 329 (419)
Q Consensus 267 ~l~~l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (419)
.-..+|. ....+++|+|||||.+.. ..
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~------------------------------------~~ 116 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPM------------------------------------MV 116 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCH------------------------------------HH
T ss_pred HHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCH------------------------------------HH
Confidence 1112221 113468999999997642 11
Q ss_pred HHhHHHHhcCc-ccC------CCCCEEEEEecCCC-------CCCCccccCCCCcc-eEEEeCCCCH--HHHHHHHHHhh
Q 040638 330 TFGLLNFTNGL-WSS------SGDERIIVFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCTL--CGFKILASNYL 392 (419)
Q Consensus 330 ls~Ll~~ldg~-~s~------~g~~~iiV~tTN~~-------~~LdpALlrpGR~d-~~I~~~~~~~--~~~~~l~~~~l 392 (419)
...|+..++.. +.. ......+|+|||.+ ..++++|.. ||+ ..|.+|.... ++...+++.++
T Consensus 117 q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~--Rl~~~~i~lp~L~~R~~di~~l~~~~l 194 (265)
T 2bjv_A 117 QEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLD--ALAFDVVQLPPLRERESDIMLMAEYFA 194 (265)
T ss_dssp HHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHH--HHCSEEEECCCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHH--hhcCcEEeCCChhhhhHHHHHHHHHHH
Confidence 22344444421 110 01236788999874 357899998 886 5677777754 67777777665
Q ss_pred C
Q 040638 393 G 393 (419)
Q Consensus 393 ~ 393 (419)
.
T Consensus 195 ~ 195 (265)
T 2bjv_A 195 I 195 (265)
T ss_dssp H
T ss_pred H
Confidence 4
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.45 E-value=6.3e-13 Score=144.12 Aligned_cols=159 Identities=14% Similarity=0.163 Sum_probs=110.6
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccC-ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCCh--
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKR-GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGN-- 265 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~r-G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~-- 265 (419)
+.++|.++.++.+.+.+......-. . -..+. .+||+||||||||++++++|..+ +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~---~--~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~ 565 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLK---D--PKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHS 565 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCS---C--TTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCC
T ss_pred CcCcChHHHHHHHHHHHHHHHcccC---C--CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccc
Confidence 4578888888888877765432110 0 01122 49999999999999999999998 678999999887432
Q ss_pred ---HHHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Q 040638 266 ---KHLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWS 342 (419)
Q Consensus 266 ---~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s 342 (419)
..+...+. ....+||||||||.+. ...+..|+..+|.-.-
T Consensus 566 ~~~~~l~~~~~-~~~~~vl~lDEi~~~~------------------------------------~~~~~~Ll~~le~g~~ 608 (758)
T 3pxi_A 566 TSGGQLTEKVR-RKPYSVVLLDAIEKAH------------------------------------PDVFNILLQVLEDGRL 608 (758)
T ss_dssp CC---CHHHHH-HCSSSEEEEECGGGSC------------------------------------HHHHHHHHHHHHHSBC
T ss_pred cccchhhHHHH-hCCCeEEEEeCccccC------------------------------------HHHHHHHHHHhccCeE
Confidence 22333332 2457899999999652 2234456666654211
Q ss_pred C-------CCCCEEEEEecCCCCC------------CCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 343 S-------SGDERIIVFTTNHKDR------------LDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 343 ~-------~g~~~iiV~tTN~~~~------------LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
. ...+.++|+|||.+.. ++|+|+. |||..|.|+.++.+++..|+..++..
T Consensus 609 ~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--Rl~~~i~~~~l~~~~~~~i~~~~l~~ 677 (758)
T 3pxi_A 609 TDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--RIDEIIVFHSLEKKHLTEIVSLMSDQ 677 (758)
T ss_dssp C-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--TSSEEEECC--CHHHHHHHHHHHHHH
T ss_pred EcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--hCCeEEecCCCCHHHHHHHHHHHHHH
Confidence 1 1134689999997654 7888888 99999999999999999999998754
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.44 E-value=3.4e-13 Score=146.19 Aligned_cols=158 Identities=21% Similarity=0.244 Sum_probs=110.9
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|..|+.++|.++..+.+++.+.. ..+.++||+||||||||++++++|+.+ +..++.
T Consensus 181 ~~~~~d~~iGr~~~i~~l~~~l~~-------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 181 RVGGIDPLIGREKELERAIQVLCR-------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTS-------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred hcCCCCCccCCHHHHHHHHHHHhc-------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 467899999998887777654421 235679999999999999999999987 566777
Q ss_pred EEecccC--------ChHHHHHHHHHcc--CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHH
Q 040638 257 LELSSVE--------GNKHLRKVLIATE--NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVER 326 (419)
Q Consensus 257 l~l~~~~--------~~~~l~~l~~~~~--~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (419)
+++..+. ....++.++.... .++||||||+|.+.+...... .
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~-----~----------------------- 299 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASG-----G----------------------- 299 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSS-----C-----------------------
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCc-----c-----------------------
Confidence 7665442 1356777776654 379999999998865211100 0
Q ss_pred HHHHHhHHHHhcCcccCCCCCEEEEEecCCC-----CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 327 ILETFGLLNFTNGLWSSSGDERIIVFTTNHK-----DRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 327 ~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~-----~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
... ..+.+..+.. .++..+|++||.+ -.+||+|.| ||+ .|.++.|+.+++..+++.++.
T Consensus 300 ~~~---~~~~L~~~l~--~~~~~~I~at~~~~~~~~~~~d~aL~~--Rf~-~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 300 QVD---AANLIKPLLS--SGKIRVIGSTTYQEFSNIFEKDRALAR--RFQ-KIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp HHH---HHHHHSSCSS--SCCCEEEEEECHHHHHCCCCCTTSSGG--GEE-EEECCCCCHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHh--CCCeEEEEEeCchHHhhhhhcCHHHHh--Cce-EEEcCCCCHHHHHHHHHHHHH
Confidence 111 2233333332 2456788888764 357999999 998 699999999999999987654
No 71
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.43 E-value=3.2e-13 Score=146.39 Aligned_cols=146 Identities=19% Similarity=0.205 Sum_probs=104.9
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----------CCcEEE
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----------HFDVYD 256 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----------~~~v~~ 256 (419)
.|..|+.++|.++.++.+++.+.. ..+.++||+||||||||++|+++|+.+ +..++.
T Consensus 175 ~~~~ld~iiG~~~~i~~l~~~l~~-------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~ 241 (758)
T 3pxi_A 175 KEDSLDPVIGRSKEIQRVIEVLSR-------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMT 241 (758)
T ss_dssp TSSCSCCCCCCHHHHHHHHHHHHC-------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEEC
T ss_pred hhCCCCCccCchHHHHHHHHHHhC-------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEE
Confidence 567899999999888888765432 235579999999999999999999997 778887
Q ss_pred EEeccc---CChHHHHHHHHHc--cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 257 LELSSV---EGNKHLRKVLIAT--ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 257 l~l~~~---~~~~~l~~l~~~~--~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
+++..- .....++.++... ..++||||| .. .....
T Consensus 242 ~~~g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD-----~~-----------------------------------~~~~~ 281 (758)
T 3pxi_A 242 LDMGTKYRGEFEDRLKKVMDEIRQAGNIILFID-----AA-----------------------------------IDASN 281 (758)
T ss_dssp C----------CTTHHHHHHHHHTCCCCEEEEC-----C-----------------------------------------
T ss_pred ecccccccchHHHHHHHHHHHHHhcCCEEEEEc-----Cc-----------------------------------hhHHH
Confidence 776111 1234677777654 468999999 00 00011
Q ss_pred hHHHHhcCcccCCCCCEEEEEecCCCC-----CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCC
Q 040638 332 GLLNFTNGLWSSSGDERIIVFTTNHKD-----RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 332 ~Ll~~ldg~~s~~g~~~iiV~tTN~~~-----~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.|+..++ .+++.+|+|||..+ .+||+|.| ||. .|.++.|+.+++..|++.++..
T Consensus 282 ~L~~~l~------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf~-~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 282 ILKPSLA------RGELQCIGATTLDEYRKYIEKDAALER--RFQ-PIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp --CCCTT------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE-EEECCCCCHHHHHHHHHHTTTT
T ss_pred HHHHHHh------cCCEEEEeCCChHHHHHHhhccHHHHh--hCc-EEEeCCCCHHHHHHHHHHHHHH
Confidence 1222221 24688999999988 79999999 995 5999999999999999987765
No 72
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.43 E-value=2.4e-12 Score=127.59 Aligned_cols=160 Identities=14% Similarity=0.014 Sum_probs=112.0
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEecccCCh
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLELSSVEGN 265 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l~~~~~~ 265 (419)
.+++++|.++..+.+.+.+.....+.. +..+.++|+||||||||++++++++.+ +..+..+++....+.
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~~~~-------~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~ 87 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLRNPG-------HHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF 87 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHHSTT-------SSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCC-------CCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCH
Confidence 457899999999988887776554321 112369999999999999999999999 567778876554321
Q ss_pred H----------------------H----HHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHH
Q 040638 266 K----------------------H----LRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRN 319 (419)
Q Consensus 266 ~----------------------~----l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (419)
. . +...+.....+.||+|||+|.+ +
T Consensus 88 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l-~---------------------------- 138 (389)
T 1fnn_A 88 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL-A---------------------------- 138 (389)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS-C----------------------------
T ss_pred HHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc-c----------------------------
Confidence 1 1 1112222345889999999976 1
Q ss_pred HHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhCC
Q 040638 320 LILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRMDV-HIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 320 ~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~d~-~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
...+..|+..++...........+|++||.+ +.+++.+.+ ||.. .|+++.++.++...+++..+..
T Consensus 139 -------~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~ 208 (389)
T 1fnn_A 139 -------PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRG--IMGKYVIRFSPYTKDQIFDILLDRAKA 208 (389)
T ss_dssp -------HHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHH--HHTTCEEECCCCBHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhh--cCCCceEEeCCCCHHHHHHHHHHHHHh
Confidence 1233445555544321001357888999988 778999888 8875 8999999999999999988753
No 73
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=3e-13 Score=133.55 Aligned_cols=158 Identities=15% Similarity=0.210 Sum_probs=108.4
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc------CCcEEEEEecccC
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL------HFDVYDLELSSVE 263 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l------~~~v~~l~l~~~~ 263 (419)
.+++++|.++..+.+.+.+...... ..++.++|+||||||||+|++++++.+ +..++.+++....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~---------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYRE---------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGT---------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcC---------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 5578899888877776554332211 234579999999999999999999998 7888888864321
Q ss_pred C----------------------hHH-HHHH---HHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHH
Q 040638 264 G----------------------NKH-LRKV---LIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQI 317 (419)
Q Consensus 264 ~----------------------~~~-l~~l---~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (419)
. ... +..+ +.....+.||+|||+|.+....+
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----------------------- 145 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----------------------- 145 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC-----------------------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc-----------------------
Confidence 1 112 2222 22223489999999997753110
Q ss_pred HHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC---CCCCccccCCCCcc-eEEEeCCCCHHHHHHHHHHhhC
Q 040638 318 RNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK---DRLDPALLRPGRMD-VHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 318 ~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~---~~LdpALlrpGR~d-~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
...+..|+..++.. .+....+|++||.+ +.+++++.+ ||. ..|+++.++.++..+++...+.
T Consensus 146 ---------~~~l~~l~~~~~~~---~~~~~~~I~~~~~~~~~~~~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~ 211 (386)
T 2qby_A 146 ---------DDILYKLSRINSEV---NKSKISFIGITNDVKFVDLLDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQ 211 (386)
T ss_dssp ---------STHHHHHHHHHHSC---CC--EEEEEEESCGGGGGGCTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHhhchhhc---CCCeEEEEEEECCCChHhhhCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHH
Confidence 11344566666554 23457888899877 578888888 665 4899999999999999998764
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=1.9e-12 Score=111.36 Aligned_cols=85 Identities=13% Similarity=0.144 Sum_probs=63.8
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHH
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLR 269 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~ 269 (419)
.++|.....+.+.+.+..... ....+||+||||||||++|+++++.. +.+++ +++..+.....+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhh
Confidence 456777777777776665532 23459999999999999999999987 67788 9998876655566
Q ss_pred HHHHHccCCeEEEEecCcccc
Q 040638 270 KVLIATENKSILVVEDIDCCT 290 (419)
Q Consensus 270 ~l~~~~~~~sIlviddiD~~~ 290 (419)
..+..+ .+++|+|||||.+.
T Consensus 70 ~~~~~a-~~g~l~ldei~~l~ 89 (145)
T 3n70_A 70 DFIALA-QGGTLVLSHPEHLT 89 (145)
T ss_dssp HHHHHH-TTSCEEEECGGGSC
T ss_pred cHHHHc-CCcEEEEcChHHCC
Confidence 666554 46899999999774
No 75
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.35 E-value=3.6e-11 Score=117.76 Aligned_cols=125 Identities=21% Similarity=0.160 Sum_probs=94.4
Q ss_pred ccCceEEeCCCCCcHHHHHHHHHHHcC------------------------CcEEEEEec---ccCChHHHHHHHHHcc-
Q 040638 225 WKRGYLLFGPLGTGKSSLIAAMANYLH------------------------FDVYDLELS---SVEGNKHLRKVLIATE- 276 (419)
Q Consensus 225 ~~rG~LL~GPpGtGKTsL~~aiA~~l~------------------------~~v~~l~l~---~~~~~~~l~~l~~~~~- 276 (419)
.+.+|||+||||+|||++++++|+.+. .+++.++.. .-.+-..++.++....
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~ 102 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNE 102 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhh
Confidence 356799999999999999999999874 345655543 1123345677665542
Q ss_pred -----CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEE
Q 040638 277 -----NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIV 351 (419)
Q Consensus 277 -----~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV 351 (419)
.+.|++|||+|.+.. .....|+..++.. ....++|
T Consensus 103 ~~~~~~~kvviIdead~l~~------------------------------------~a~naLLk~lEep----~~~~~~I 142 (334)
T 1a5t_A 103 HARLGGAKVVWVTDAALLTD------------------------------------AAANALLKTLEEP----PAETWFF 142 (334)
T ss_dssp CCTTSSCEEEEESCGGGBCH------------------------------------HHHHHHHHHHTSC----CTTEEEE
T ss_pred ccccCCcEEEEECchhhcCH------------------------------------HHHHHHHHHhcCC----CCCeEEE
Confidence 468999999997632 1234467777654 3458889
Q ss_pred EecCCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhh
Q 040638 352 FTTNHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYL 392 (419)
Q Consensus 352 ~tTN~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l 392 (419)
++||.++.|.|++++ |+ ..++++.++.++...++....
T Consensus 143 l~t~~~~~l~~ti~S--Rc-~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 143 LATREPERLLATLRS--RC-RLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp EEESCGGGSCHHHHT--TS-EEEECCCCCHHHHHHHHHHHC
T ss_pred EEeCChHhCcHHHhh--cc-eeeeCCCCCHHHHHHHHHHhc
Confidence 999999999999998 76 579999999999999998876
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.30 E-value=1.3e-11 Score=127.00 Aligned_cols=128 Identities=16% Similarity=0.105 Sum_probs=81.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCC--cEEEEEecccCChHHH-----------HHHHHHc-----cCCeEEEEecCcc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHF--DVYDLELSSVEGNKHL-----------RKVLIAT-----ENKSILVVEDIDC 288 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~--~v~~l~l~~~~~~~~l-----------~~l~~~~-----~~~sIlviddiD~ 288 (419)
.++||+||||||||++++++|+.++. .+..+.+.. ...+.+ ...+... ..++|++||||+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~-~t~~dL~G~~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~r 120 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF-STPEEVFGPLSIQALKDEGRYERLTSGYLPEAEIVFLDEIWK 120 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT-CCHHHHHCCBC----------CBCCTTSGGGCSEEEEESGGG
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc-CCHHHhcCcccHHHHhhchhHHhhhccCCCcceeeeHHhHhh
Confidence 46999999999999999999999854 233333321 111111 1112111 1356999999985
Q ss_pred cccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc-c-----CCCCCEEEEEecCCCCC---
Q 040638 289 CTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW-S-----SSGDERIIVFTTNHKDR--- 359 (419)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~-s-----~~g~~~iiV~tTN~~~~--- 359 (419)
+. ..+.+.|+..|+... . ..-..+++|+|||....
T Consensus 121 ~~------------------------------------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~ 164 (500)
T 3nbx_X 121 AG------------------------------------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADS 164 (500)
T ss_dssp CC------------------------------------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTC
T ss_pred hc------------------------------------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccc
Confidence 42 234455666664221 1 11123467888886322
Q ss_pred CCccccCCCCcceEEEeCCCCH-HHHHHHHHHhhC
Q 040638 360 LDPALLRPGRMDVHIHMSYCTL-CGFKILASNYLG 393 (419)
Q Consensus 360 LdpALlrpGR~d~~I~~~~~~~-~~~~~l~~~~l~ 393 (419)
..+|+++ ||..+|++++|+. +++..|++....
T Consensus 165 ~~~aLld--RF~~~i~v~~p~~~ee~~~IL~~~~~ 197 (500)
T 3nbx_X 165 SLEALYD--RMLIRLWLDKVQDKANFRSMLTSQQD 197 (500)
T ss_dssp TTHHHHT--TCCEEEECCSCCCHHHHHHHHTCCCC
T ss_pred cHHHHHH--HHHHHHHHHHhhhhhhHHHHHhcccc
Confidence 4469999 9999999999987 778899987654
No 77
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.28 E-value=1.4e-11 Score=135.19 Aligned_cols=160 Identities=16% Similarity=0.223 Sum_probs=110.6
Q ss_pred ccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChH-
Q 040638 191 FDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK- 266 (419)
Q Consensus 191 f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~- 266 (419)
++.++|..+.++.+...+.....+- ..-+ .+...+||+||||||||++++++|+.+ +.+++.++++.+....
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~---~~~~-~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~ 632 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGL---KDPN-RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHA 632 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGC---SCSS-SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhccc---CCCC-CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhH
Confidence 3567888888887777665543110 0000 112359999999999999999999999 7889999988764321
Q ss_pred ------------------HHHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHH
Q 040638 267 ------------------HLRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERIL 328 (419)
Q Consensus 267 ------------------~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (419)
.+...+.. ...+||||||||.+- ..
T Consensus 633 ~s~l~g~~~~~~G~~~~g~l~~~~~~-~~~~vl~lDEi~~l~------------------------------------~~ 675 (854)
T 1qvr_A 633 VSRLIGAPPGYVGYEEGGQLTEAVRR-RPYSVILFDEIEKAH------------------------------------PD 675 (854)
T ss_dssp GGGC--------------CHHHHHHH-CSSEEEEESSGGGSC------------------------------------HH
T ss_pred HHHHcCCCCCCcCccccchHHHHHHh-CCCeEEEEecccccC------------------------------------HH
Confidence 12222222 346899999998652 23
Q ss_pred HHHhHHHHhcCcccC-C------CCCEEEEEecCC--------------------------CCCCCccccCCCCcceEEE
Q 040638 329 ETFGLLNFTNGLWSS-S------GDERIIVFTTNH--------------------------KDRLDPALLRPGRMDVHIH 375 (419)
Q Consensus 329 ~ls~Ll~~ldg~~s~-~------g~~~iiV~tTN~--------------------------~~~LdpALlrpGR~d~~I~ 375 (419)
.+..|+..+|.-.-. . -.+.+||+|||. ...+.|+|+. |||..+.
T Consensus 676 ~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~--Rl~~~i~ 753 (854)
T 1qvr_A 676 VFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVV 753 (854)
T ss_dssp HHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHH--TCSBCCB
T ss_pred HHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHH--hcCeEEe
Confidence 445577777643211 1 135789999997 2356777877 9999999
Q ss_pred eCCCCHHHHHHHHHHhhC
Q 040638 376 MSYCTLCGFKILASNYLG 393 (419)
Q Consensus 376 ~~~~~~~~~~~l~~~~l~ 393 (419)
+..++.++...|+..++.
T Consensus 754 ~~pl~~edi~~i~~~~l~ 771 (854)
T 1qvr_A 754 FRPLTKEQIRQIVEIQLS 771 (854)
T ss_dssp CCCCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 999999999999999886
No 78
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.28 E-value=2.6e-11 Score=117.35 Aligned_cols=152 Identities=15% Similarity=0.190 Sum_probs=99.0
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHH
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLR 269 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~ 269 (419)
+++|.....+.+.+.+.... .....+||+||||||||++++++++.. +.+++.++++.+..+..-.
T Consensus 3 ~iig~s~~~~~~~~~~~~~a-----------~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 3 HMIGSSPAMQHLLNEIAMVA-----------PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp CCCCCSHHHHHHHHHHHHHC-----------STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CcEECCHHHHHHHHHHHHHh-----------CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46777777777777666543 224579999999999999999999976 5678889988774322112
Q ss_pred HHHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 040638 270 KVLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFG 332 (419)
Q Consensus 270 ~l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 332 (419)
.+|. ....+++|||||||.+.. .....
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~------------------------------------~~q~~ 115 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------------------------------LMQVR 115 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCCH------------------------------------HHHHH
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCCH------------------------------------HHHHH
Confidence 2221 112357999999997742 12233
Q ss_pred HHHHhcCcc-cC------CCCCEEEEEecCCC-------CCCCccccCCCCcc-eEEEeCCCC--HHHHHHHHHHhhC
Q 040638 333 LLNFTNGLW-SS------SGDERIIVFTTNHK-------DRLDPALLRPGRMD-VHIHMSYCT--LCGFKILASNYLG 393 (419)
Q Consensus 333 Ll~~ldg~~-s~------~g~~~iiV~tTN~~-------~~LdpALlrpGR~d-~~I~~~~~~--~~~~~~l~~~~l~ 393 (419)
|+..++... .. ....+.+|+|||.. ..++++|.. ||+ ..|.+|.+. .++...|+..|+.
T Consensus 116 Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~ 191 (304)
T 1ojl_A 116 LLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYY--RLNVVAIEMPSLRQRREDIPLLADHFLR 191 (304)
T ss_dssp HHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHH
T ss_pred HHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHH
Confidence 555555432 10 01236788899875 346677776 774 457777776 5677777777664
No 79
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.26 E-value=1.8e-11 Score=145.65 Aligned_cols=137 Identities=22% Similarity=0.339 Sum_probs=97.0
Q ss_pred cCceEEeCCCCCcHHHHH-HHHHHHcCCcEEEEEecccCChHHHHHHHHHc-----------------cCCeEEEEecCc
Q 040638 226 KRGYLLFGPLGTGKSSLI-AAMANYLHFDVYDLELSSVEGNKHLRKVLIAT-----------------ENKSILVVEDID 287 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~-~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~-----------------~~~sIlviddiD 287 (419)
++++||+||||||||++| +++++..++.+..++++...+...+.+.+... ..++|+||||||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 578999999999999999 56666668888899998887777777666532 124799999999
Q ss_pred ccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCC------CCEEEEEecCCCC---
Q 040638 288 CCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSG------DERIIVFTTNHKD--- 358 (419)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g------~~~iiV~tTN~~~--- 358 (419)
.... ++.+ .+ .....+.+++ ...|.+.... ...++|+|||++.
T Consensus 1347 mp~~--d~yg----------~q---------------~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gG 1398 (2695)
T 4akg_A 1347 LPKL--DKYG----------SQ---------------NVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPG 1398 (2695)
T ss_dssp CSCC--CSSS----------CC---------------HHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTT
T ss_pred cccc--cccC----------ch---------------hHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCC
Confidence 5321 1111 00 0112222333 2234443211 2478999999995
Q ss_pred --CCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 359 --RLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 359 --~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
.|+|+|+| || ..|++++|+.++++.|++.++.
T Consensus 1399 R~~l~~rllR--rf-~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1399 RIPMSERFTR--HA-AILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp CCCCCHHHHT--TE-EEEECCCCTTTHHHHHHHHHHH
T ss_pred CccCChhhhh--ee-eEEEeCCCCHHHHHHHHHHHHH
Confidence 89999999 98 7799999999999999988874
No 80
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.26 E-value=9.3e-12 Score=110.61 Aligned_cols=95 Identities=19% Similarity=0.267 Sum_probs=64.3
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEeccc
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLELSSV 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l~~~ 262 (419)
.+.+|+++....+..+.+++.+..+... +.....++++|+||||||||||++++|+.+ +..+..+....+
T Consensus 5 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~------~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~ 78 (180)
T 3ec2_A 5 WNANLDTYHPKNVSQNRALLTIRVFVHN------FNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDL 78 (180)
T ss_dssp TTCCSSSCCCCSHHHHHHHHHHHHHHHS------CCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHH
T ss_pred hhCccccccCCCHHHHHHHHHHHHHHHh------ccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 4568999887555555565666655533 233346779999999999999999999988 556655655433
Q ss_pred CChHHHH---------HHHHHccCCeEEEEecCccc
Q 040638 263 EGNKHLR---------KVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 263 ~~~~~l~---------~l~~~~~~~sIlviddiD~~ 289 (419)
. ..+. .++....++.+|+|||++..
T Consensus 79 ~--~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 79 I--FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp H--HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred H--HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 1 1111 23344457899999999853
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.26 E-value=1.1e-12 Score=138.21 Aligned_cols=127 Identities=20% Similarity=0.250 Sum_probs=85.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe----cccC----ChH-----HHH-HHHHHccCCeEEEEecCccccccc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL----SSVE----GNK-----HLR-KVLIATENKSILVVEDIDCCTELQ 293 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l----~~~~----~~~-----~l~-~l~~~~~~~sIlviddiD~~~~~~ 293 (419)
.+||+||||||||+|++++|+.++...+.... ..+. .+. .++ ..+. ...++|++|||||.+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~-~A~~gil~IDEid~l~~-- 405 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALV-LADGGIAVIDEIDKMRD-- 405 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHH-HHSSSEECCTTTTCCCS--
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeE-ecCCCcEEeehhhhCCH--
Confidence 59999999999999999999999766554211 1110 000 000 0111 12468999999997632
Q ss_pred chhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcc---------cCCCCCEEEEEecCCCC------
Q 040638 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLW---------SSSGDERIIVFTTNHKD------ 358 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~---------s~~g~~~iiV~tTN~~~------ 358 (419)
.....|+..|+.-. ........+|+|||+++
T Consensus 406 ----------------------------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~ 451 (595)
T 3f9v_A 406 ----------------------------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISE 451 (595)
T ss_dssp ----------------------------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTT
T ss_pred ----------------------------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcc
Confidence 12334566665321 11123467899999987
Q ss_pred -------CCCccccCCCCcce-EEEeCCCCHHHHHHHHHHhhCC
Q 040638 359 -------RLDPALLRPGRMDV-HIHMSYCTLCGFKILASNYLGI 394 (419)
Q Consensus 359 -------~LdpALlrpGR~d~-~I~~~~~~~~~~~~l~~~~l~~ 394 (419)
.|++||++ |||. .+..++|+.+ ...|+++.+..
T Consensus 452 ~~~~~ni~l~~aLl~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 452 RPVSDNINLPPTILS--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp SCSCTTTCSCSSSGG--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred cCchhccCCCHHHHh--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 89999999 9984 5666788888 88899888875
No 82
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=99.22 E-value=9.2e-12 Score=123.73 Aligned_cols=120 Identities=18% Similarity=0.230 Sum_probs=85.4
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccccccchhhhccC
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCTELQDRSAQART 301 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~ 301 (419)
+++.++.++|+||||||||||++++++.++..++.+... .......+....+..++++||++.......+... .
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~----~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r~l~~--~ 238 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP----LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPS--G 238 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSC----TTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCC--C
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEecc----chhHHHHHHHhcchhHHHHHHHHHHHHHHhhccc--c
Confidence 566677799999999999999999999998776543221 1222323444567788899999987652111000 0
Q ss_pred CCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCC
Q 040638 302 ASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSY 378 (419)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~ 378 (419)
....+...+.+.+||. +.++++|||++.+ +++++|||++..++..+
T Consensus 239 -----------------------~~~~~~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 239 -----------------------QGINNLDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp -----------------------SHHHHHHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred -----------------------CcchHHHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 0112556788888885 3467899999999 89999999999888866
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.22 E-value=9.7e-12 Score=106.68 Aligned_cols=84 Identities=12% Similarity=-0.007 Sum_probs=60.4
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHH
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVL 272 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~ 272 (419)
+++|..+..+++.+.+..... ....+||+||||||||++|+++++..+ +++.++++.+.. .....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~-~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI-DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH-HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC-----------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh-HhhhhHH
Confidence 356777777888777766542 245699999999999999999999888 777777765532 2234444
Q ss_pred HHccCCeEEEEecCcccc
Q 040638 273 IATENKSILVVEDIDCCT 290 (419)
Q Consensus 273 ~~~~~~sIlviddiD~~~ 290 (419)
..+ .+++|+|||||.+.
T Consensus 72 ~~a-~~~~l~lDei~~l~ 88 (143)
T 3co5_A 72 QKA-EGGVLYVGDIAQYS 88 (143)
T ss_dssp HHT-TTSEEEEEECTTCC
T ss_pred HhC-CCCeEEEeChHHCC
Confidence 443 46899999999774
No 84
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=6.8e-11 Score=114.39 Aligned_cols=122 Identities=16% Similarity=0.192 Sum_probs=93.6
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc------CCcEEEEEecc-cCChHHHHHHHHHcc------CCeEEEEecCccccccc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL------HFDVYDLELSS-VEGNKHLRKVLIATE------NKSILVVEDIDCCTELQ 293 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l------~~~v~~l~l~~-~~~~~~l~~l~~~~~------~~sIlviddiD~~~~~~ 293 (419)
..||||||||+|||++++++|+.+ ..++..++.+. -.+-..++.++.... ...|++|||+|.+..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~-- 96 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ-- 96 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH--
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCH--
Confidence 369999999999999999999864 56788777653 223445777665442 257999999997732
Q ss_pred chhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceE
Q 040638 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVH 373 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~ 373 (419)
.....|+..++.. .+..++|++||.+++|.|++++ | .
T Consensus 97 ----------------------------------~a~naLLk~LEep----~~~t~fIl~t~~~~kl~~tI~S--R---~ 133 (305)
T 2gno_A 97 ----------------------------------QAANAFLKALEEP----PEYAVIVLNTRRWHYLLPTIKS--R---V 133 (305)
T ss_dssp ----------------------------------HHHHHTHHHHHSC----CTTEEEEEEESCGGGSCHHHHT--T---S
T ss_pred ----------------------------------HHHHHHHHHHhCC----CCCeEEEEEECChHhChHHHHc--e---e
Confidence 1233477777764 3457888999999999999999 7 7
Q ss_pred EEeCCCCHHHHHHHHHHhhC
Q 040638 374 IHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 374 I~~~~~~~~~~~~l~~~~l~ 393 (419)
++++.++.++....++..++
T Consensus 134 ~~f~~l~~~~i~~~L~~~~~ 153 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKIG 153 (305)
T ss_dssp EEEECCCCHHHHHHHHHHHT
T ss_pred EeCCCCCHHHHHHHHHHHhC
Confidence 89999999999999988763
No 85
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.07 E-value=4.1e-10 Score=112.36 Aligned_cols=164 Identities=9% Similarity=0.113 Sum_probs=101.7
Q ss_pred CccccccchhhHHHHHHHH-HHHhhchhhhhhcCccccCceEE--eCCCCCcHHHHHHHHHHHc---------CCcEEEE
Q 040638 190 TFDTLAMVTDMKKMIMDDL-ERFLKRKDYYRRVGKAWKRGYLL--FGPLGTGKSSLIAAMANYL---------HFDVYDL 257 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l-~~~~~~~~~~~~~g~~~~rG~LL--~GPpGtGKTsL~~aiA~~l---------~~~v~~l 257 (419)
..+.++|-++..+.+.+.+ .....+.. ..++.++| +||||+|||+|++++++.+ +..+..+
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~-------~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~ 92 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAG-------LSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYV 92 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSC-------BCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCC-------CCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEE
Confidence 3467888888888887766 54432200 12346889 9999999999999999887 4456666
Q ss_pred EecccCCh----------------------HH----HHHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcch
Q 040638 258 ELSSVEGN----------------------KH----LRKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRR 311 (419)
Q Consensus 258 ~l~~~~~~----------------------~~----l~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~ 311 (419)
++....+. .. +...+.....+.||+|||+|.+..... .
T Consensus 93 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~-------------- 156 (412)
T 1w5s_A 93 NAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--I-------------- 156 (412)
T ss_dssp EGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--S--------------
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--c--------------
Confidence 65332111 11 112222234588999999997743100 0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCC--CCEEEEEecCCCC---CCC---ccccCCCCcceEEEeCCCCHHH
Q 040638 312 DLMLQIRNLILFVERILETFGLLNFTNGLWSSSG--DERIIVFTTNHKD---RLD---PALLRPGRMDVHIHMSYCTLCG 383 (419)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g--~~~iiV~tTN~~~---~Ld---pALlrpGR~d~~I~~~~~~~~~ 383 (419)
....+..++..++... ..+ ....+|+|||.++ .++ +.+.+ |+...+.++.++.++
T Consensus 157 --------------~~~~l~~l~~~~~~~~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e 219 (412)
T 1w5s_A 157 --------------AAEDLYTLLRVHEEIP-SRDGVNRIGFLLVASDVRALSYMREKIPQVES--QIGFKLHLPAYKSRE 219 (412)
T ss_dssp --------------CHHHHHHHHTHHHHSC-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHT--TCSEEEECCCCCHHH
T ss_pred --------------chHHHHHHHHHHHhcc-cCCCCceEEEEEEeccccHHHHHhhhcchhhh--hcCCeeeeCCCCHHH
Confidence 0122333333333321 012 4577888888665 345 66666 566669999999999
Q ss_pred HHHHHHHhhC
Q 040638 384 FKILASNYLG 393 (419)
Q Consensus 384 ~~~l~~~~l~ 393 (419)
..+++...+.
T Consensus 220 ~~~ll~~~~~ 229 (412)
T 1w5s_A 220 LYTILEQRAE 229 (412)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987664
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.96 E-value=1.5e-09 Score=124.49 Aligned_cols=147 Identities=12% Similarity=0.129 Sum_probs=92.7
Q ss_pred CCccccccchhhHHHHHHHHHHHhhc----------hhhhhh------cCcc----------ccCc--eEEeCCCCCcHH
Q 040638 189 STFDTLAMVTDMKKMIMDDLERFLKR----------KDYYRR------VGKA----------WKRG--YLLFGPLGTGKS 240 (419)
Q Consensus 189 ~~f~~l~g~~~~k~~i~~~l~~~~~~----------~~~~~~------~g~~----------~~rG--~LL~GPpGtGKT 240 (419)
.+|+++.+..+.|+.+++.+.+++.. ++.|+. .|.. +|+| +|||||||||||
T Consensus 1017 ~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT 1096 (1706)
T 3cmw_A 1017 SSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKT 1096 (1706)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHH
T ss_pred ceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChH
Confidence 48999999999999999999999854 556665 3433 5566 999999999999
Q ss_pred HHHHHHHHHcCC---cEEEEEeccc------------------C----ChHHHHHHHHH--ccCCeEEEEecCccccccc
Q 040638 241 SLIAAMANYLHF---DVYDLELSSV------------------E----GNKHLRKVLIA--TENKSILVVEDIDCCTELQ 293 (419)
Q Consensus 241 sL~~aiA~~l~~---~v~~l~l~~~------------------~----~~~~l~~l~~~--~~~~sIlviddiD~~~~~~ 293 (419)
+|+.++|.+... +...++.... . ++..|+.++.. ...++++++|++|++.+..
T Consensus 1097 ~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A 1097 TLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred HHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCccc
Confidence 999999986632 3333333221 1 35567666643 3569999999999998743
Q ss_pred chhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCC
Q 040638 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHK 357 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~ 357 (419)
...+...+.. . ....+.++++|..+|++.... +++|.+||+.
T Consensus 1177 ~~~g~~~~~~------~-------------~~~~r~~~q~l~~~~~~~~~~---~v~v~~~n~~ 1218 (1706)
T 3cmw_A 1177 EIEGEIGDSH------M-------------GLAARMMSQAMRKLAGNLKQS---NTLLIFINQI 1218 (1706)
T ss_dssp HHHSCTTCCC------T-------------THHHHHHHHHHHHHHHHHHHT---TCEEEEEECE
T ss_pred cccccccccc------c-------------cHHHHHHHHHHHHHHhhhccC---CeEEEEeccc
Confidence 3111111000 0 012456889999999976543 2444477765
No 87
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.92 E-value=1.7e-09 Score=97.82 Aligned_cols=59 Identities=19% Similarity=0.266 Sum_probs=40.8
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDID 287 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD 287 (419)
++.++++|+|||||||||+++.|+|+.++..+..+.- ..+. ..+.......|++|||+|
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fan----s~s~--f~l~~l~~~kIiiLDEad 113 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVN----STSH--FWLEPLTDTKVAMLDDAT 113 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCC----SSSC--GGGGGGTTCSSEEEEEEC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe----ccch--hhhcccCCCCEEEEECCC
Confidence 5557789999999999999999999999765543211 1110 011222345699999998
No 88
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.88 E-value=8.6e-10 Score=106.78 Aligned_cols=96 Identities=24% Similarity=0.376 Sum_probs=60.2
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC----CcEEEEEecccC
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH----FDVYDLELSSVE 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~----~~v~~l~l~~~~ 263 (419)
+.+|+++.+...-++.+++.+..++... +....++++||||||||||+|++|+|+.+. ..+..+.+..+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~------~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~ 193 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQY------PSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFA 193 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHC------SCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhc------cccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHH
Confidence 4689998876544455555555555431 111257899999999999999999998765 667666654320
Q ss_pred -------ChHHHHHHHHHccCCeEEEEecCccc
Q 040638 264 -------GNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 264 -------~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
....+...+.......+|+||||+..
T Consensus 194 ~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 01111122233345679999999743
No 89
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.87 E-value=2e-09 Score=97.02 Aligned_cols=97 Identities=20% Similarity=0.313 Sum_probs=62.8
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCcc-ccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKA-WKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV 262 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~-~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~ 262 (419)
.+.+|+++.+.....+.+++.+..++.... .. .+++++|+||||||||+|++++++.+ +..+..+.+..+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~ 93 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYE------PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL 93 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCC------SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhh------hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence 356899998766555555566666654321 11 12689999999999999999999988 566776666443
Q ss_pred CC-------hHHHHHHHHHccCCeEEEEecCccc
Q 040638 263 EG-------NKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 263 ~~-------~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
.. ...+..++.....+.+|+|||++..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 94 FRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred HHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 10 0011222333344679999999754
No 90
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.86 E-value=1.6e-09 Score=114.40 Aligned_cols=53 Identities=32% Similarity=0.321 Sum_probs=41.6
Q ss_pred cCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 186 DHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 186 ~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
-.|..|++++|...+++.+...+. . ...++|+||||||||||+++||+.+...
T Consensus 35 ~rp~~l~~i~G~~~~l~~l~~~i~----~-----------g~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 35 VPEKLIDQVIGQEHAVEVIKTAAN----Q-----------KRHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCSSHHHHCCSCHHHHHHHHHHHH----T-----------TCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred ccccccceEECchhhHhhcccccc----C-----------CCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 357789999999887766544332 1 2469999999999999999999998644
No 91
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.82 E-value=4.8e-09 Score=90.53 Aligned_cols=58 Identities=19% Similarity=0.182 Sum_probs=45.1
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCcccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCCT 290 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~~ 290 (419)
...++|+||+|+|||+|++++++.+ +..+..+....+... ....++.+|+|||++.+.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-------~~~~~~~lLilDE~~~~~ 96 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-------DAAFEAEYLAVDQVEKLG 96 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-------GGGGGCSEEEEESTTCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-------HHHhCCCEEEEeCccccC
Confidence 4569999999999999999999988 666777776655433 113468899999998653
No 92
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.75 E-value=4.9e-09 Score=101.21 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=63.9
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe--c----ccC--ChHHHHHHHHHccCCeEEEEecCccccccc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL--S----SVE--GNKHLRKVLIATENKSILVVEDIDCCTELQ 293 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l--~----~~~--~~~~l~~l~~~~~~~sIlviddiD~~~~~~ 293 (419)
|++..+.++|+||||||||+|+.++|...+..+..+.+ . ... .+..+..+........+||||+|+.+....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~aL~~~~ 198 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLKNVIGAA 198 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCTTTC---
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccccccccc
Confidence 34444558999999999999999999875555333333 1 111 122333333333222299999999875421
Q ss_pred chhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccc
Q 040638 294 DRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPAL 364 (419)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpAL 364 (419)
..... . + .....+.+++..++++.... ++.+|++|| +...|+++
T Consensus 199 ~~~s~-~------G-----------------~v~~~lrqlL~~L~~~~k~~--gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 199 GGNTT-S------G-----------------GISRGAFDLLSDIGAMAASR--GCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHH--TCEEEEECC-CSSCSSSH
T ss_pred ccccc-c------c-----------------hHHHHHHHHHHHHHHHHhhC--CCEEEEEeC-CcccchhH
Confidence 11000 0 0 01234455666665554332 256778888 66777765
No 93
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.67 E-value=1.2e-07 Score=92.21 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=40.3
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
..+.++|-++..+.+.+ + .. +.++++||+|+|||+|++.+++.++..+..+++..
T Consensus 11 ~~~~~~gR~~el~~L~~-l----~~------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-L----RA------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-T----CS------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CHHHhcChHHHHHHHHH-h----cC------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 45567776655555533 2 11 36999999999999999999999877777777653
No 94
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.66 E-value=7.5e-08 Score=115.83 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=91.3
Q ss_pred cCceEEeCCCCCcHHHHHHHHHH-HcCCcEEEEEecccCChHHHHHHHHHc------------------cCCeEEEEecC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMAN-YLHFDVYDLELSSVEGNKHLRKVLIAT------------------ENKSILVVEDI 286 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~-~l~~~v~~l~l~~~~~~~~l~~l~~~~------------------~~~sIlviddi 286 (419)
.+.+||+||||||||++++...+ ..+..+..++++.-.+...+...+... .++.|+||||+
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 45699999999999988765444 446778888998887777777766530 11368999999
Q ss_pred cccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhc--CcccCC------CCCEEEEEecCCC-
Q 040638 287 DCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTN--GLWSSS------GDERIIVFTTNHK- 357 (419)
Q Consensus 287 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ld--g~~s~~------g~~~iiV~tTN~~- 357 (419)
+.... +.- |. +..+.-|...+| |.+... -....+|+|+|++
T Consensus 1384 Nmp~~--D~y----------Gt------------------Q~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~ 1433 (3245)
T 3vkg_A 1384 NLPST--DKY----------GT------------------QRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPT 1433 (3245)
T ss_dssp TCCCC--CTT----------SC------------------CHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTT
T ss_pred CCCCc--ccc----------cc------------------ccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCC
Confidence 84211 111 11 122223333443 222111 1346789999988
Q ss_pred ----CCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhC
Q 040638 358 ----DRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLG 393 (419)
Q Consensus 358 ----~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~ 393 (419)
..|+|+++| ||.. +.+++|+.++...|+..++.
T Consensus 1434 ~gGr~~l~~Rf~r--~F~v-i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1434 DAGRVQLTHRFLR--HAPI-LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp STTCCCCCHHHHT--TCCE-EECCCCCHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHh--hceE-EEeCCCCHHHHHHHHHHHHH
Confidence 469999999 9965 99999999999999877653
No 95
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.65 E-value=6.5e-08 Score=91.09 Aligned_cols=59 Identities=20% Similarity=0.250 Sum_probs=40.3
Q ss_pred cccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHccCCeEEEEecCccc
Q 040638 224 AWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIATENKSILVVEDIDCC 289 (419)
Q Consensus 224 ~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~~~~sIlviddiD~~ 289 (419)
+++++++||||||||||+++.|+|+.+.. .+.++.+. . ...+.....+.|++.||....
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~--~----~f~l~~~~~k~i~l~Ee~~~~ 160 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN--E----NFPFNDCVDKMVIWWEEGKMT 160 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC--S----SCTTGGGSSCSEEEECSCCEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhcc-cceeeccc--c----ccccccccccEEEEeccccch
Confidence 44668999999999999999999998765 34332211 1 113444556777787777643
No 96
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.64 E-value=3.5e-08 Score=89.29 Aligned_cols=119 Identities=14% Similarity=0.097 Sum_probs=74.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc--------C-CcEEEEEecccCC---------------------hHHHHHHHH-Hcc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL--------H-FDVYDLELSSVEG---------------------NKHLRKVLI-ATE 276 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l--------~-~~v~~l~l~~~~~---------------------~~~l~~l~~-~~~ 276 (419)
-+|++|+||||||+++.+++... + ..++..++.++.. ...+..++. ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 48999999999999998875433 3 5566555543321 122333221 123
Q ss_pred CCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCC
Q 040638 277 NKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNH 356 (419)
Q Consensus 277 ~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~ 356 (419)
.++||+|||++.+++.+... .+. . .++..+..- ......+|++|++
T Consensus 87 ~~~vliIDEAq~l~~~~~~~---~e~------------------------~----rll~~l~~~---r~~~~~iil~tq~ 132 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAG---SKI------------------------P----ENVQWLNTH---RHQGIDIFVLTQG 132 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTT---CCC------------------------C----HHHHGGGGT---TTTTCEEEEEESC
T ss_pred CceEEEEEChhhhccCcccc---chh------------------------H----HHHHHHHhc---CcCCeEEEEECCC
Confidence 48999999999886522110 000 0 133333321 1234677888988
Q ss_pred CCCCCccccCCCCcceEEEeCCCCHH
Q 040638 357 KDRLDPALLRPGRMDVHIHMSYCTLC 382 (419)
Q Consensus 357 ~~~LdpALlrpGR~d~~I~~~~~~~~ 382 (419)
++.||.++.. |++.+++++.+...
T Consensus 133 ~~~l~~~lr~--ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 133 PKLLDQNLRT--LVRKHYHIASNKMG 156 (199)
T ss_dssp GGGBCHHHHT--TEEEEEEEEECSSC
T ss_pred HHHHhHHHHH--HhheEEEEcCcccC
Confidence 9999999888 99999999876443
No 97
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.57 E-value=2e-07 Score=111.43 Aligned_cols=132 Identities=17% Similarity=0.160 Sum_probs=93.0
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHc-cCCeEEEEecCcccccccchhhhccCCCC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIAT-ENKSILVVEDIDCCTELQDRSAQARTASP 304 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~-~~~sIlviddiD~~~~~~~~~~~~~~~~~ 304 (419)
..|.+++||+|||||++++++|+.+|..++.++|+.-.+...+.++|..+ ..++++++|||+.+-. ...
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~---evL------- 714 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDE---KVL------- 714 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCH---HHH-------
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcCh---HHH-------
Confidence 46789999999999999999999999999999999887888888888665 4579999999997632 000
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHh-cCc--cc------CCCCCEEEEEecC----CCCCCCccccCCCCcc
Q 040638 305 YWHSPRRDLMLQIRNLILFVERILETFGLLNFT-NGL--WS------SSGDERIIVFTTN----HKDRLDPALLRPGRMD 371 (419)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~l-dg~--~s------~~g~~~iiV~tTN----~~~~LdpALlrpGR~d 371 (419)
..+ ...+..+++.+ ++. .. .-.....+++|.| ....|+++|.+ ||
T Consensus 715 ----------s~l---------~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~F- 772 (2695)
T 4akg_A 715 ----------SAV---------SANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKK--SF- 772 (2695)
T ss_dssp ----------HHH---------HHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHT--TE-
T ss_pred ----------HHH---------HHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHh--he-
Confidence 000 00111112221 111 00 0112345778888 45679999998 88
Q ss_pred eEEEeCCCCHHHHHHHHH
Q 040638 372 VHIHMSYCTLCGFKILAS 389 (419)
Q Consensus 372 ~~I~~~~~~~~~~~~l~~ 389 (419)
+.|.|.+|+.+...++.-
T Consensus 773 r~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 773 REFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp EEEECCCCCHHHHHHHHH
T ss_pred EEEEeeCCCHHHHHHHHH
Confidence 789999999988777753
No 98
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.57 E-value=2.6e-06 Score=82.42 Aligned_cols=174 Identities=16% Similarity=0.086 Sum_probs=98.1
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccC----
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVE---- 263 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~---- 263 (419)
|..-+.++|-++..+.+.+.+.. | +.++++||+|+|||+|++.+++.++ +..+++....
T Consensus 8 ~~~~~~~~gR~~el~~L~~~l~~-----------~----~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~ 70 (350)
T 2qen_A 8 KTRREDIFDREEESRKLEESLEN-----------Y----PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERG 70 (350)
T ss_dssp CCSGGGSCSCHHHHHHHHHHHHH-----------C----SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTT
T ss_pred CCChHhcCChHHHHHHHHHHHhc-----------C----CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeeccccccc
Confidence 33456678877766666554431 1 4699999999999999999999875 4555543211
Q ss_pred --Ch------------------------------------HHHHHHH---HHc---cCCeEEEEecCcccccccchhhhc
Q 040638 264 --GN------------------------------------KHLRKVL---IAT---ENKSILVVEDIDCCTELQDRSAQA 299 (419)
Q Consensus 264 --~~------------------------------------~~l~~l~---~~~---~~~sIlviddiD~~~~~~~~~~~~ 299 (419)
+. ..+..++ ... ..|.+|+|||++.+......
T Consensus 71 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~---- 146 (350)
T 2qen_A 71 HITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSR---- 146 (350)
T ss_dssp CBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTT----
T ss_pred CCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCcc----
Confidence 00 1122222 111 24899999999977431000
Q ss_pred cCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC---------CCCccccCCCCc
Q 040638 300 RTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD---------RLDPALLRPGRM 370 (419)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~---------~LdpALlrpGR~ 370 (419)
. ....+..|...++.. ....+|+|+.... .....+ .||.
T Consensus 147 --~-----------------------~~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l--~~~~ 194 (350)
T 2qen_A 147 --G-----------------------GKELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPL--YGRI 194 (350)
T ss_dssp --T-----------------------THHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTT--TTCC
T ss_pred --c-----------------------hhhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCcc--ccCc
Confidence 0 011122222333332 2355666654321 112223 2577
Q ss_pred ceEEEeCCCCHHHHHHHHHHhhCCCCCCCh-HHHHHHHhcCCCCc
Q 040638 371 DVHIHMSYCTLCGFKILASNYLGITEHPLF-SEVEELIEQTKVTP 414 (419)
Q Consensus 371 d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~-~~i~~l~~~~~~tp 414 (419)
...++++..+.++..+++...+...+.... +.+..+.+.++..|
T Consensus 195 ~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P 239 (350)
T 2qen_A 195 AGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIP 239 (350)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCH
T ss_pred cceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCH
Confidence 778999999999999999887754333332 34445544444333
No 99
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.45 E-value=3.6e-06 Score=83.24 Aligned_cols=168 Identities=17% Similarity=0.179 Sum_probs=101.9
Q ss_pred ccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCc--EEEEEecccCChHHHHH
Q 040638 193 TLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFD--VYDLELSSVEGNKHLRK 270 (419)
Q Consensus 193 ~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~--v~~l~l~~~~~~~~l~~ 270 (419)
.++|......++.+.+..... ....++++|++||||+.+++++....+.. ++.++|..+..+..-..
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~-----------~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAK-----------SKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHT-----------SCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred cccccchHHHHHHhhhhhhhc-----------cchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 355555555555554443321 13349999999999999999999887544 88999998865443444
Q ss_pred HHH-----------------HccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhH
Q 040638 271 VLI-----------------ATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGL 333 (419)
Q Consensus 271 l~~-----------------~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~L 333 (419)
+|. .....+.||||||+.+.. .....|
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------------------------~~Q~~L 242 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGELDQ------------------------------------RVQAKL 242 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCH------------------------------------HHHHHH
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhhCCH------------------------------------HHHHHH
Confidence 442 123467899999997732 222335
Q ss_pred HHHhcC-cccCCCC------CEEEEEecCCC-------CCCCccccCCCCcce-EEEeCCCCH--HHHHHHHHHhhCC--
Q 040638 334 LNFTNG-LWSSSGD------ERIIVFTTNHK-------DRLDPALLRPGRMDV-HIHMSYCTL--CGFKILASNYLGI-- 394 (419)
Q Consensus 334 l~~ldg-~~s~~g~------~~iiV~tTN~~-------~~LdpALlrpGR~d~-~I~~~~~~~--~~~~~l~~~~l~~-- 394 (419)
+..++. ....-|+ ...+|+|||.. ..+.+.|.. |+.. .|++|.... ++...|+..|+..
T Consensus 243 l~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~ 320 (368)
T 3dzd_A 243 LRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYY--RLSVFQIYLPPLRERGKDVILLAEYFLKKFA 320 (368)
T ss_dssp HHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTSEEEECCCGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHH--HhCCeEEeCCChhhchhhHHHHHHHHHHHHH
Confidence 555532 2111122 24577888742 223334443 4433 688998877 7888888888753
Q ss_pred -----CCCCChHHHHHHHhc
Q 040638 395 -----TEHPLFSEVEELIEQ 409 (419)
Q Consensus 395 -----~~~~l~~~i~~l~~~ 409 (419)
....+.++....+..
T Consensus 321 ~~~~~~~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 321 KEYKKNCFELSEETKEYLMK 340 (368)
T ss_dssp HHTTCCCCCBCHHHHHHHHT
T ss_pred HHcCCCCCCcCHHHHHHHHh
Confidence 122355555555554
No 100
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.31 E-value=7e-06 Score=81.71 Aligned_cols=153 Identities=15% Similarity=0.177 Sum_probs=93.3
Q ss_pred cccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccCChHHH
Q 040638 192 DTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVEGNKHL 268 (419)
Q Consensus 192 ~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~~~~~l 268 (419)
+.++|....-+++.+.+.... .....++++|++||||+++++++..... .+++.++|..+..+..-
T Consensus 137 ~~~ig~s~~m~~l~~~i~~~a-----------~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 137 EEYVFESPKMKEILEKIKKIS-----------CAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCSHHHHHHHHHHHHHT-----------TCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred hhhhhccHHhhHHHHHHHHhc-----------CCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 345555555555555554432 1134589999999999999999998874 57899999887543333
Q ss_pred HHHHHH-----------------ccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 040638 269 RKVLIA-----------------TENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETF 331 (419)
Q Consensus 269 ~~l~~~-----------------~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls 331 (419)
..+|.. ....++||||||+.+.. ....
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~------------------------------------~~q~ 249 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSL------------------------------------EAQA 249 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCH------------------------------------HHHH
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhCCH------------------------------------HHHH
Confidence 344421 13467999999997732 1222
Q ss_pred hHHHHhcC-cccCCC------CCEEEEEecCCC-------CCCCccccCCCCc-ceEEEeCCCCH--HHHHHHHHHhhC
Q 040638 332 GLLNFTNG-LWSSSG------DERIIVFTTNHK-------DRLDPALLRPGRM-DVHIHMSYCTL--CGFKILASNYLG 393 (419)
Q Consensus 332 ~Ll~~ldg-~~s~~g------~~~iiV~tTN~~-------~~LdpALlrpGR~-d~~I~~~~~~~--~~~~~l~~~~l~ 393 (419)
.|+..++. ....-| -.+.+|+|||.. ..+.+.|.- |+ ...|++|.... ++...|+..|+.
T Consensus 250 ~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~--rl~~~~i~lPpLreR~~Di~~l~~~~l~ 326 (387)
T 1ny5_A 250 KLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYY--RLGVIEIEIPPLRERKEDIIPLANHFLK 326 (387)
T ss_dssp HHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHH--HHTTEEEECCCGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHH--hhcCCeecCCcchhccccHHHHHHHHHH
Confidence 34444432 111111 135688888863 334444443 43 35677777653 778888888774
No 101
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.25 E-value=5.8e-07 Score=90.72 Aligned_cols=141 Identities=15% Similarity=0.085 Sum_probs=78.6
Q ss_pred cccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHH-HHHcCCcEEEEEecccCChHHHH---
Q 040638 194 LAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAM-ANYLHFDVYDLELSSVEGNKHLR--- 269 (419)
Q Consensus 194 l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~ai-A~~l~~~v~~l~l~~~~~~~~l~--- 269 (419)
+.|.+++|+.|.-.+ +.+... ..-.-.+||.|+||| ||+|++++ ++.+...+|..... .....|.
T Consensus 215 I~G~e~vK~aLll~L---~GG~~k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~--ss~~gLt~s~ 283 (506)
T 3f8t_A 215 LPGAEEVGKMLALQL---FSCVGK-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRR--TELTDLTAVL 283 (506)
T ss_dssp STTCHHHHHHHHHHH---TTCCSS-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGG--CCHHHHSEEE
T ss_pred cCCCHHHHHHHHHHH---cCCccc-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCC--CCccCceEEE
Confidence 567777777664322 211100 011114999999999 99999999 88776655532111 0111111
Q ss_pred ----H-----HHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCc
Q 040638 270 ----K-----VLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGL 340 (419)
Q Consensus 270 ----~-----l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~ 340 (419)
. =........|+++|||+.+-. .+++.|+..|..-
T Consensus 284 r~~tG~~~~~G~l~LAdgGvl~lDEIn~~~~------------------------------------~~qsaLlEaMEe~ 327 (506)
T 3f8t_A 284 KEDRGWALRAGAAVLADGGILAVDHLEGAPE------------------------------------PHRWALMEAMDKG 327 (506)
T ss_dssp EESSSEEEEECHHHHTTTSEEEEECCTTCCH------------------------------------HHHHHHHHHHHHS
T ss_pred EcCCCcccCCCeeEEcCCCeeehHhhhhCCH------------------------------------HHHHHHHHHHhCC
Confidence 0 001123468999999997632 2334445444321
Q ss_pred c-c----CCCCCEEEEEecCCCC-----------CCCccccCCCCcceEEE-eCCCCHHH
Q 040638 341 W-S----SSGDERIIVFTTNHKD-----------RLDPALLRPGRMDVHIH-MSYCTLCG 383 (419)
Q Consensus 341 ~-s----~~g~~~iiV~tTN~~~-----------~LdpALlrpGR~d~~I~-~~~~~~~~ 383 (419)
. + .-.....+|+|+|..+ .|+++++. |||..+. ++||+.+.
T Consensus 328 ~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RFDLi~i~~d~pd~e~ 385 (506)
T 3f8t_A 328 TVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HFDLIAFLGVDPRPGE 385 (506)
T ss_dssp EEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TCSEEEETTC------
T ss_pred cEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--heeeEEEecCCCChhH
Confidence 0 0 1123467899999876 78899999 9998654 46776544
No 102
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.22 E-value=6.8e-06 Score=72.77 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+.|.||||+|||||+++|++.++..+.
T Consensus 3 i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 679999999999999999999865443
No 103
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.18 E-value=2.6e-06 Score=99.14 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=68.3
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEeccc---------------------CCh-HHHHHHH--HHc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSV---------------------EGN-KHLRKVL--IAT 275 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~---------------------~~~-~~l~~l~--~~~ 275 (419)
++.+++++||||||||||+|+.++|... +..+..++.... ... ..++.+. .+.
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~ 1503 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS 1503 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc
Confidence 6777889999999999999999998765 444554544322 111 2222222 223
Q ss_pred cCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecC
Q 040638 276 ENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTN 355 (419)
Q Consensus 276 ~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN 355 (419)
.++++||||+++.+.+..+......+.. . ..+...++++|..|++.....+ ++|++||
T Consensus 1504 ~~~~lVVIDsi~al~p~~~~~g~~~~~~------~-------------~~~~R~lsqlL~~L~~~~~~~~---v~VI~tN 1561 (2050)
T 3cmu_A 1504 GAVDVIVVDSVAALTPKAEIEGEIGDSH------M-------------GLAARMMSQAMRKLAGNLKQSN---TLLIFIN 1561 (2050)
T ss_dssp TCCSEEEESCGGGCCCHHHHHSCTTCCC------T-------------THHHHHHHHHHHHHHHHHHTTT---CEEEEEE
T ss_pred CCCCEEEEcChhHhcccccccccccccc------c-------------chHHHHHHHHHHHHHHHHHhCC---cEEEEEc
Confidence 6799999999998876332111100000 0 0124567788888888765433 5556666
Q ss_pred CC
Q 040638 356 HK 357 (419)
Q Consensus 356 ~~ 357 (419)
..
T Consensus 1562 q~ 1563 (2050)
T 3cmu_A 1562 QI 1563 (2050)
T ss_dssp CE
T ss_pred cc
Confidence 43
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.17 E-value=9.4e-06 Score=98.06 Aligned_cols=138 Identities=17% Similarity=0.093 Sum_probs=91.4
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecccCChHHHHHHHHHc-cCCeEEEEecCcccccccchhhhccCCCC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSVEGNKHLRKVLIAT-ENKSILVVEDIDCCTELQDRSAQARTASP 304 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~~~~-~~~sIlviddiD~~~~~~~~~~~~~~~~~ 304 (419)
..|..+.||+|||||.+++.+|..+|..++.++|+.--+...+.++|... ...+..++|||+.+-. ..-.
T Consensus 604 ~~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~---~vLS------ 674 (3245)
T 3vkg_A 604 RMGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEE---RILS------ 674 (3245)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCH---HHHH------
T ss_pred cCCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCH---HHHH------
Confidence 35678999999999999999999999999999998877777788887655 4588999999997632 0000
Q ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHhHHHH-----hc-CcccCCCCCEEEEEecC----CCCCCCccccCCCCcceEE
Q 040638 305 YWHSPRRDLMLQIRNLILFVERILETFGLLNF-----TN-GLWSSSGDERIIVFTTN----HKDRLDPALLRPGRMDVHI 374 (419)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~-----ld-g~~s~~g~~~iiV~tTN----~~~~LdpALlrpGR~d~~I 374 (419)
....++ ......+... ++ |-.-.-.....+++|.| ....|+++|.. || +.|
T Consensus 675 -------vv~~qi---------~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lF-r~v 735 (3245)
T 3vkg_A 675 -------AVSQQI---------QTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKK--LF-RSM 735 (3245)
T ss_dssp -------HHHHHH---------HHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHT--TE-EEE
T ss_pred -------HHHHHH---------HHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHh--hc-EEE
Confidence 000000 0000111110 01 21000112356778888 34689999998 87 669
Q ss_pred EeCCCCHHHHHHHHHHh
Q 040638 375 HMSYCTLCGFKILASNY 391 (419)
Q Consensus 375 ~~~~~~~~~~~~l~~~~ 391 (419)
.|++|+.+...++.-.-
T Consensus 736 ~m~~Pd~~~i~ei~L~s 752 (3245)
T 3vkg_A 736 AMIKPDREMIAQVMLYS 752 (3245)
T ss_dssp ECCSCCHHHHHHHHHHT
T ss_pred EEeCCCHHHHHHHHHHH
Confidence 99999998877775443
No 105
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.86 E-value=0.00013 Score=76.26 Aligned_cols=50 Identities=22% Similarity=0.235 Sum_probs=34.6
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHH
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~ 248 (419)
|.....++|-++..+.|.+.+... . .-.+-++++||+|+|||+|++.+++
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~---~--------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL---K--------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS---T--------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcc---c--------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 444566788777777776544311 0 1133489999999999999999875
No 106
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.76 E-value=2.9e-05 Score=75.63 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=85.3
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCc-EEEEEecccCChHHHHHHHHHc------cCCeEEEEecCcc-cccccc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFD-VYDLELSSVEGNKHLRKVLIAT------ENKSILVVEDIDC-CTELQD 294 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~-v~~l~l~~~~~~~~l~~l~~~~------~~~sIlviddiD~-~~~~~~ 294 (419)
...||||||+|.||++.++++++.+ +++ ...+.+. ++..+++++... ..+-|++|||+|. +..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~--- 91 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID---PNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNA--- 91 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC---TTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCT---
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec---CCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCCh---
Confidence 5579999999999999999998865 332 2222332 234455554332 3578999999986 321
Q ss_pred hhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCC------CCCccccCCC
Q 040638 295 RSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKD------RLDPALLRPG 368 (419)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~------~LdpALlrpG 368 (419)
.....|+..+... ....++|++|+.++ ++-+++..
T Consensus 92 ---------------------------------~~~~aLl~~le~p----~~~~~~il~~~~~~~~~~~~k~~~~i~s-- 132 (343)
T 1jr3_D 92 ---------------------------------AINEQLLTLTGLL----HDDLLLIVRGNKLSKAQENAAWFTALAN-- 132 (343)
T ss_dssp ---------------------------------THHHHHHHHHTTC----BTTEEEEEEESCCCTTTTTSHHHHHHTT--
T ss_pred ---------------------------------HHHHHHHHHHhcC----CCCeEEEEEcCCCChhhHhhHHHHHHHh--
Confidence 0122356666654 23466666666543 45577776
Q ss_pred CcceEEEeCCCCHHHHHHHHHHhhCCCCCCChHH
Q 040638 369 RMDVHIHMSYCTLCGFKILASNYLGITEHPLFSE 402 (419)
Q Consensus 369 R~d~~I~~~~~~~~~~~~l~~~~l~~~~~~l~~~ 402 (419)
|. ..+++..++.++....++..+...+..+.++
T Consensus 133 r~-~~~~~~~l~~~~l~~~l~~~~~~~g~~i~~~ 165 (343)
T 1jr3_D 133 RS-VQVTCQTPEQAQLPRWVAARAKQLNLELDDA 165 (343)
T ss_dssp TC-EEEEECCCCTTHHHHHHHHHHHHTTCEECHH
T ss_pred Cc-eEEEeeCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 54 6789999999999988888886655444443
No 107
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.72 E-value=0.00016 Score=65.02 Aligned_cols=39 Identities=18% Similarity=0.118 Sum_probs=29.6
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++...-++|+||||+|||||+..+|..-+..+..++...
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 444444899999999999999999985556666665543
No 108
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.72 E-value=0.00041 Score=78.18 Aligned_cols=164 Identities=16% Similarity=0.139 Sum_probs=93.7
Q ss_pred CCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc-------CCcEEEEEe
Q 040638 187 HPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL-------HFDVYDLEL 259 (419)
Q Consensus 187 ~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l-------~~~v~~l~l 259 (419)
.|.....++|-++..++|.+.|...- .-.+-+.|+|++|+|||+||+.+++.. ...++-+.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~-----------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~ 187 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLN-----------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSI 187 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTT-----------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEEC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhcc-----------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEE
Confidence 45556678888888887776553210 112348899999999999999988752 223445555
Q ss_pred cccCCh---------------------------HHHHHHHHH----ccCCeEEEEecCcccccccchhhhccCCCCCCCC
Q 040638 260 SSVEGN---------------------------KHLRKVLIA----TENKSILVVEDIDCCTELQDRSAQARTASPYWHS 308 (419)
Q Consensus 260 ~~~~~~---------------------------~~l~~l~~~----~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~ 308 (419)
+..... ..+...+.. ..++.+|||||++...
T Consensus 188 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~------------------ 249 (1249)
T 3sfz_A 188 GKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPW------------------ 249 (1249)
T ss_dssp CSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHH------------------
T ss_pred CCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHH------------------
Confidence 442110 111111111 1337899999997320
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccCCCCCEEEEEecCCCCCCCccccCCCCcceEEEeCC-CCHHHHHHH
Q 040638 309 PRRDLMLQIRNLILFVERILETFGLLNFTNGLWSSSGDERIIVFTTNHKDRLDPALLRPGRMDVHIHMSY-CTLCGFKIL 387 (419)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~~g~~~iiV~tTN~~~~LdpALlrpGR~d~~I~~~~-~~~~~~~~l 387 (419)
. ++.+ +.+..||+||..+....... .....+.++. ++.++..+|
T Consensus 250 --------------------~-------~~~~----~~~~~ilvTtR~~~~~~~~~----~~~~~~~~~~~l~~~~a~~l 294 (1249)
T 3sfz_A 250 --------------------V-------LKAF----DNQCQILLTTRDKSVTDSVM----GPKHVVPVESGLGREKGLEI 294 (1249)
T ss_dssp --------------------H-------HTTT----CSSCEEEEEESSTTTTTTCC----SCBCCEECCSSCCHHHHHHH
T ss_pred --------------------H-------HHhh----cCCCEEEEEcCCHHHHHhhc----CCceEEEecCCCCHHHHHHH
Confidence 0 1111 12235667777654432111 2245577775 899999999
Q ss_pred HHHhhCCCCCCChHHHHHHHhcCCCCc
Q 040638 388 ASNYLGITEHPLFSEVEELIEQTKVTP 414 (419)
Q Consensus 388 ~~~~l~~~~~~l~~~i~~l~~~~~~tp 414 (419)
+..+.......+.+...++++..+.-|
T Consensus 295 ~~~~~~~~~~~~~~~~~~i~~~~~glP 321 (1249)
T 3sfz_A 295 LSLFVNMKKEDLPAEAHSIIKECKGSP 321 (1249)
T ss_dssp HHHHHTSCSTTCCTHHHHHHHHTTTCH
T ss_pred HHHhhCCChhhCcHHHHHHHHHhCCCH
Confidence 998876544434344555555544444
No 109
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.64 E-value=3.2e-05 Score=69.21 Aligned_cols=31 Identities=35% Similarity=0.461 Sum_probs=27.6
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.++|.|||||||||+++++|..+++.+++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 3489999999999999999999999887654
No 110
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.63 E-value=0.00015 Score=71.23 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=44.3
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC---------------------ChHHHHHHH---HHc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVL---IAT 275 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~---------------------~~~~l~~l~---~~~ 275 (419)
++..+-++|+||||+|||||+..+|..+ +..+..++..... +...+...+ ...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~ 137 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRS 137 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhh
Confidence 3444448999999999999999999875 4555555543311 111111121 123
Q ss_pred cCCeEEEEecCccccc
Q 040638 276 ENKSILVVEDIDCCTE 291 (419)
Q Consensus 276 ~~~sIlviddiD~~~~ 291 (419)
..+.+++||.+..+.+
T Consensus 138 ~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 138 GVVDLIVVDSVAALVP 153 (356)
T ss_dssp SCCSEEEEECTTTCCC
T ss_pred cCCCeEEehHhhhhcC
Confidence 4678999999987764
No 111
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.58 E-value=3.8e-05 Score=67.00 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=29.2
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.-++|.||||+||||+++++|..++..++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 348899999999999999999999988877665
No 112
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.57 E-value=5e-05 Score=66.76 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=28.7
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++.++|.|||||||||+++.+|..+++.+++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34689999999999999999999999988865
No 113
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.53 E-value=6e-05 Score=65.40 Aligned_cols=30 Identities=40% Similarity=0.800 Sum_probs=26.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
.-+.|.|||||||||+++++|+.++..+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 348999999999999999999999986654
No 114
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.48 E-value=6.4e-05 Score=64.93 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=27.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
++|.||||+||||+++.+|..+++.+++.+
T Consensus 4 i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 789999999999999999999998887554
No 115
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.48 E-value=6.9e-05 Score=66.10 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=27.2
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+.-++|.||||+||||+++.++..+++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3458899999999999999999999987765
No 116
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=5.9e-05 Score=66.62 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=26.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH-cCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY-LHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~-l~~~v~~l 257 (419)
-++|.|+|||||||+++.+|.. +++.++++
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 3899999999999999999999 68776654
No 117
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.43 E-value=8.5e-05 Score=64.81 Aligned_cols=29 Identities=34% Similarity=0.555 Sum_probs=26.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-++|.|||||||||+++++|..+++.+++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 48899999999999999999999987765
No 118
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.39 E-value=0.00012 Score=63.49 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=28.5
Q ss_pred hcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 220 RVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 220 ~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.+.+..+.| +.|.||+|+|||||+++|++.+ ..-..+.
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~ 64 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK 64 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence 334444556 8899999999999999999998 4433333
No 119
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.36 E-value=0.00013 Score=63.87 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=27.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.++|.||||+||||+++++|..+++.+++.
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4589999999999999999999999877654
No 120
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.35 E-value=0.00012 Score=65.36 Aligned_cols=28 Identities=18% Similarity=0.375 Sum_probs=24.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
-+.|.||||+||||+++++++.++..++
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 4889999999999999999999866444
No 121
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.34 E-value=8.4e-05 Score=69.37 Aligned_cols=30 Identities=30% Similarity=0.551 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-+.|.||||+||||+++.+|+.+++.+++.
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 489999999999999999999999988764
No 122
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.34 E-value=0.00014 Score=63.93 Aligned_cols=30 Identities=30% Similarity=0.391 Sum_probs=27.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.|+||+||||+++.+|..+++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 488999999999999999999999988754
No 123
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.34 E-value=0.00014 Score=62.90 Aligned_cols=30 Identities=37% Similarity=0.562 Sum_probs=27.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
.++|.|+|||||||+++.+|..+++++++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999988764
No 124
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.33 E-value=0.00047 Score=67.46 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=23.5
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++..+-+.|+||||+|||||+..+|..+
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3333348999999999999999999987
No 125
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.32 E-value=0.00012 Score=68.26 Aligned_cols=30 Identities=27% Similarity=0.520 Sum_probs=27.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
++|.|||||||||+++++|..+++.+++.+
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~~~i~~D 33 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGWPVVALD 33 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCCeEEecc
Confidence 789999999999999999999998877654
No 126
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.29 E-value=0.0001 Score=69.07 Aligned_cols=45 Identities=29% Similarity=0.482 Sum_probs=37.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 68 (257)
T 1g6h_A 22 ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68 (257)
T ss_dssp EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC
Confidence 455666777777 789999999999999999999988888777654
No 127
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.28 E-value=0.00016 Score=62.52 Aligned_cols=30 Identities=20% Similarity=0.383 Sum_probs=26.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.|+||+||||+++.+|..+++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 488999999999999999999999887653
No 128
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.28 E-value=0.00058 Score=79.85 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=49.9
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCCh------------------------HHHHHHHHH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGN------------------------KHLRKVLIA 274 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~------------------------~~l~~l~~~ 274 (419)
|++..+.++|+||||||||+|+.+++.+. +..+..+.+...... ..+...+.+
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~ 1156 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1156 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHH
Confidence 35566669999999999999999987654 566666666543111 122233445
Q ss_pred ccCCeEEEEecCcccccc
Q 040638 275 TENKSILVVEDIDCCTEL 292 (419)
Q Consensus 275 ~~~~sIlviddiD~~~~~ 292 (419)
...+.+||||++..+...
T Consensus 1157 ~~~~dlvVIDsl~~L~~~ 1174 (2050)
T 3cmu_A 1157 SGAVDVIVVDSVAALTPK 1174 (2050)
T ss_dssp HTCCSEEEESCGGGCCCH
T ss_pred hCCCCEEEECCccccccc
Confidence 567999999999988653
No 129
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00017 Score=64.43 Aligned_cols=31 Identities=26% Similarity=0.339 Sum_probs=27.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+-++|.||||+||||+++.++..++..+++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~ 49 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence 3589999999999999999999998776653
No 130
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.27 E-value=0.0032 Score=65.22 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=32.0
Q ss_pred cchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHH
Q 040638 196 MVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 196 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~ 248 (419)
|-++.+++|.+.|...- -...+-+.++|++|+||||||+.+++
T Consensus 132 GR~~~~~~l~~~L~~~~----------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 132 IREYHVDRVIKKLDEMC----------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCHHHHHHHHHHHHHHT----------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhccc----------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 77777888877663210 01134588999999999999999997
No 131
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.26 E-value=8.1e-05 Score=68.26 Aligned_cols=45 Identities=20% Similarity=0.246 Sum_probs=36.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 19 ~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 65 (224)
T 2pcj_A 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEG 65 (224)
T ss_dssp EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 345556666666 789999999999999999999998888877654
No 132
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.26 E-value=0.00018 Score=62.65 Aligned_cols=28 Identities=39% Similarity=0.678 Sum_probs=24.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
++|.||||+||||+++++++.++..+++
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 8899999999999999999988765543
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.26 E-value=0.00014 Score=64.21 Aligned_cols=30 Identities=33% Similarity=0.381 Sum_probs=24.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-+.|.||||+||||+++++|+.++...+.+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i 40 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHF 40 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEE
Confidence 388999999999999999999765544333
No 134
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.26 E-value=0.00012 Score=67.56 Aligned_cols=46 Identities=20% Similarity=0.343 Sum_probs=37.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+...
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~ 67 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNI 67 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTE
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCE
Confidence 345556666666 8899999999999999999999998888877553
No 135
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.26 E-value=0.00017 Score=61.97 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=25.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.||||+||||+++.+ ..+++.++++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 3789999999999999999 8889887654
No 136
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.26 E-value=0.0001 Score=69.34 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=36.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 21 vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g 67 (262)
T 1b0u_A 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNG 67 (262)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 445566666777 789999999999999999999998888776654
No 137
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.26 E-value=0.00029 Score=67.53 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=37.2
Q ss_pred hhhHHHHHHHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 198 TDMKKMIMDDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 198 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.+++.+.+.+...+........+.+..++| +.|.||+|+||||+++.+|+.+.
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4566667777777665432112344444445 88999999999999999999874
No 138
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.25 E-value=0.00018 Score=63.16 Aligned_cols=32 Identities=16% Similarity=0.228 Sum_probs=27.7
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++-++|.|+|||||||+++.++..+++.+++.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 34588999999999999999999999877654
No 139
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00015 Score=63.58 Aligned_cols=29 Identities=28% Similarity=0.523 Sum_probs=25.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.|||||||||+++.+|..+++.+++.
T Consensus 7 I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 78999999999999999999998776543
No 140
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.22 E-value=0.00068 Score=66.51 Aligned_cols=23 Identities=52% Similarity=0.892 Sum_probs=21.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+++.||+|+||||+++++++.+.
T Consensus 126 i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 126 VLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhccc
Confidence 88999999999999999999874
No 141
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.22 E-value=0.00036 Score=66.35 Aligned_cols=34 Identities=29% Similarity=0.354 Sum_probs=26.8
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+.-++|.||||+||||+++.++..++...+.++.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 3448899999999999999999988544455544
No 142
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.22 E-value=0.00066 Score=66.42 Aligned_cols=70 Identities=11% Similarity=0.134 Sum_probs=44.6
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC---------------------ChHHHHHHHH---H
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVLI---A 274 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~---------------------~~~~l~~l~~---~ 274 (419)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... +...+..++. .
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 34444559999999999999999988654 4455555543211 1111222221 2
Q ss_pred ccCCeEEEEecCccccc
Q 040638 275 TENKSILVVEDIDCCTE 291 (419)
Q Consensus 275 ~~~~sIlviddiD~~~~ 291 (419)
...+.+||||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 24589999999998863
No 143
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.22 E-value=0.00012 Score=68.92 Aligned_cols=45 Identities=20% Similarity=0.451 Sum_probs=37.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 39 vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 85 (263)
T 2olj_A 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDG 85 (263)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Confidence 455566666777 889999999999999999999988877776644
No 144
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.22 E-value=0.00022 Score=63.67 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=26.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.||||+||||+++.+|..+++.++++
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 388999999999999999999999887654
No 145
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.21 E-value=0.00013 Score=67.00 Aligned_cols=43 Identities=21% Similarity=0.305 Sum_probs=34.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 67 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEE
Confidence 345555666666 8899999999999999999999877666554
No 146
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.21 E-value=0.00014 Score=66.21 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=35.0
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 25 l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 70 (214)
T 1sgw_A 25 LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 70 (214)
T ss_dssp EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECC
Confidence 34445555666 889999999999999999999988877776643
No 147
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.21 E-value=0.00012 Score=67.93 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=36.9
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 21 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 67 (240)
T 1ji0_A 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 345556666667 889999999999999999999988888887754
No 148
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.20 E-value=0.00013 Score=71.63 Aligned_cols=44 Identities=23% Similarity=0.456 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
..+.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+.
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 64 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLS 64 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEEC
Confidence 445566667777 78999999999999999999998877766553
No 149
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.20 E-value=0.00022 Score=62.68 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=25.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-++|.|+||+||||+++.+|..++..+++
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 48899999999999999999999887654
No 150
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.19 E-value=0.00017 Score=63.24 Aligned_cols=24 Identities=17% Similarity=0.203 Sum_probs=22.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-++|.||||+||||+++.+|..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999887
No 151
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.19 E-value=0.0017 Score=63.86 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=45.7
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC---------------------ChHHHHHHHHH---
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVLIA--- 274 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~---------------------~~~~l~~l~~~--- 274 (419)
|++..+-++|+||||+|||+|+..+|..+ +..+..+++..-. +...+...+..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 44555559999999999999999888664 4566655554311 11222222222
Q ss_pred ccCCeEEEEecCccccc
Q 040638 275 TENKSILVVEDIDCCTE 291 (419)
Q Consensus 275 ~~~~sIlviddiD~~~~ 291 (419)
...+.+||||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 24578999999998763
No 152
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.19 E-value=0.00013 Score=68.05 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=36.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.+..+.+..++| +.|.||+|+|||||+++|++.+..+ +.+.+..
T Consensus 15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g 60 (249)
T 2qi9_C 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAG 60 (249)
T ss_dssp TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETT
T ss_pred EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECC
Confidence 345556666667 7899999999999999999999988 8887754
No 153
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.19 E-value=0.00025 Score=61.05 Aligned_cols=29 Identities=28% Similarity=0.487 Sum_probs=26.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.|+||+||||+++.++..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 78999999999999999999999887754
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.19 E-value=0.00022 Score=65.93 Aligned_cols=29 Identities=21% Similarity=0.444 Sum_probs=25.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
.-+.|.||||+||||++++||..++....
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 44889999999999999999988876544
No 155
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.18 E-value=0.00025 Score=63.92 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=26.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 68899999999999999999999887755
No 156
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.18 E-value=0.00015 Score=67.60 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=36.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g 70 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDG 70 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 345556666666 889999999999999999999988888777654
No 157
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.17 E-value=0.00013 Score=69.27 Aligned_cols=45 Identities=20% Similarity=0.429 Sum_probs=37.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 36 vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 82 (279)
T 2ihy_A 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82 (279)
T ss_dssp EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECC
Confidence 455566666777 889999999999999999999988888877654
No 158
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.17 E-value=0.00016 Score=68.50 Aligned_cols=45 Identities=22% Similarity=0.318 Sum_probs=36.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G 69 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDN 69 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECC
Confidence 344555666667 889999999999999999999988877776654
No 159
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.17 E-value=0.0012 Score=63.41 Aligned_cols=68 Identities=12% Similarity=0.058 Sum_probs=40.6
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc-----CCcEEEEEeccc---------------------CChHHH-HHHHH--
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL-----HFDVYDLELSSV---------------------EGNKHL-RKVLI-- 273 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l-----~~~v~~l~l~~~---------------------~~~~~l-~~l~~-- 273 (419)
++.. -++++||||+|||+|+-.++..+ +..+..++...- .+...+ -.+..
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 4433 37899999999999977665433 344554544321 011122 11211
Q ss_pred ---HccCCeEEEEecCccccc
Q 040638 274 ---ATENKSILVVEDIDCCTE 291 (419)
Q Consensus 274 ---~~~~~sIlviddiD~~~~ 291 (419)
....+.++|||-|..+..
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 123689999999998864
No 160
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.16 E-value=0.00022 Score=62.95 Aligned_cols=30 Identities=13% Similarity=0.226 Sum_probs=26.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.|||||||||+++.+|..++..+++.
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 488999999999999999999999876654
No 161
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.15 E-value=0.00027 Score=63.64 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 68899999999999999999999887754
No 162
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.15 E-value=0.00016 Score=67.63 Aligned_cols=45 Identities=16% Similarity=0.306 Sum_probs=36.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 30 vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g 76 (256)
T 1vpl_A 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFG 76 (256)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 345556666677 889999999999999999999988877776543
No 163
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.14 E-value=0.00021 Score=70.08 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=34.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+
T Consensus 30 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 30 SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 344556666666 7899999999999999999999877666654
No 164
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.14 E-value=0.00016 Score=62.78 Aligned_cols=29 Identities=24% Similarity=0.216 Sum_probs=23.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHH-HcCCcEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMAN-YLHFDVY 255 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~-~l~~~v~ 255 (419)
.-++|.||||+||||+++.++. .+++.++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 3478999999999999999998 4554433
No 165
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.14 E-value=0.00012 Score=67.67 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=32.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAI 64 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEE
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEE
Confidence 345555666666 8899999999999999999988665555443
No 166
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.13 E-value=0.00019 Score=71.04 Aligned_cols=44 Identities=25% Similarity=0.399 Sum_probs=35.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
..+.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+.
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEEC
Confidence 345566666777 78999999999999999999998877766553
No 167
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.13 E-value=0.00025 Score=62.75 Aligned_cols=31 Identities=16% Similarity=0.294 Sum_probs=27.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
.-++|.||||+||||+++.+|..+++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 3488999999999999999999999776644
No 168
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.13 E-value=0.00029 Score=62.98 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=24.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~ 258 (419)
-+.|.|||||||||+++++|+.+ +...+.++
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 37899999999999999999998 44433444
No 169
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.13 E-value=0.00019 Score=67.78 Aligned_cols=45 Identities=24% Similarity=0.277 Sum_probs=37.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 34 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g 80 (271)
T 2ixe_A 34 VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDG 80 (271)
T ss_dssp CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 455566666677 889999999999999999999988888777654
No 170
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.13 E-value=0.00016 Score=64.10 Aligned_cols=22 Identities=18% Similarity=0.383 Sum_probs=17.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-++++||||+||||++..++..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999998655544
No 171
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.12 E-value=0.00028 Score=63.89 Aligned_cols=30 Identities=17% Similarity=0.283 Sum_probs=26.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.||||+||||+++.+|..+++.+++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 388999999999999999999999877654
No 172
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.12 E-value=0.00028 Score=63.90 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.||||+||||+++.+|..++..+++.
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 388999999999999999999999876654
No 173
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.12 E-value=0.00044 Score=64.31 Aligned_cols=33 Identities=18% Similarity=0.201 Sum_probs=26.8
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.-++|.||||+||||+++.++..++...+.++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~ 65 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEec
Confidence 448899999999999999999998754444443
No 174
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.12 E-value=0.0002 Score=70.39 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=34.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEEC
Confidence 344556666666 78999999999999999999998777766553
No 175
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.11 E-value=0.0002 Score=70.34 Aligned_cols=44 Identities=23% Similarity=0.298 Sum_probs=35.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+.
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 63 (359)
T 2yyz_A 18 AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63 (359)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEEC
Confidence 345556666666 78999999999999999999998777766553
No 176
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.10 E-value=0.00081 Score=65.96 Aligned_cols=70 Identities=14% Similarity=0.182 Sum_probs=46.8
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC---------------------ChHHHHHHHH---H
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVLI---A 274 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~---------------------~~~~l~~l~~---~ 274 (419)
|++..+-++|+||||+|||+|+..+|..+ +..+..++..... ....+..++. .
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 45555569999999999999999988764 4566666653211 1122333332 2
Q ss_pred ccCCeEEEEecCccccc
Q 040638 275 TENKSILVVEDIDCCTE 291 (419)
Q Consensus 275 ~~~~sIlviddiD~~~~ 291 (419)
...+.+||||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 35688999999998764
No 177
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.10 E-value=0.00019 Score=70.14 Aligned_cols=50 Identities=14% Similarity=0.275 Sum_probs=37.6
Q ss_pred cchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 196 MVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 196 g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
..+.+.+.+++.+...+...+ ...++|.||||+||||+++++|+.+++.+
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~---------~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNY---------RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCS---------CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCC---------eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 345677777777766553211 22489999999999999999999998776
No 178
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.10 E-value=0.00031 Score=63.67 Aligned_cols=29 Identities=38% Similarity=0.575 Sum_probs=25.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-+.|.|||||||||+++.+++.+++.+.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48899999999999999999999976654
No 179
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.09 E-value=0.00026 Score=64.43 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=22.3
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++.+++..+.| +.|.||+|+|||||+++|++.+
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33445555555 8899999999999999999987
No 180
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.09 E-value=0.00022 Score=62.33 Aligned_cols=28 Identities=21% Similarity=0.284 Sum_probs=21.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
-++|.|+||+||||+++.+|..++..++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4889999999999999999999998876
No 181
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.08 E-value=0.00057 Score=67.09 Aligned_cols=54 Identities=17% Similarity=0.402 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHhhchhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 198 TDMKKMIMDDLERFLKRKDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 198 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.+++.+.+.|...+........+.+..++| ++|.||+|+||||+++.+|+.+.
T Consensus 127 ~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 127 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp HHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 3456666666666664432112344444445 88999999999999999999874
No 182
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.08 E-value=0.00022 Score=70.36 Aligned_cols=44 Identities=20% Similarity=0.323 Sum_probs=35.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+.
T Consensus 26 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~ 71 (372)
T 1v43_A 26 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71 (372)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEEC
Confidence 345556666666 78999999999999999999998777766553
No 183
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.07 E-value=0.00012 Score=68.97 Aligned_cols=46 Identities=26% Similarity=0.382 Sum_probs=36.4
Q ss_pred hhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 216 DYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 216 ~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
..++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 25 ~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g 72 (266)
T 4g1u_C 25 ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLG 72 (266)
T ss_dssp EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETT
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC
Confidence 3455566666677 889999999999999999999987766666543
No 184
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.07 E-value=0.00044 Score=60.74 Aligned_cols=30 Identities=23% Similarity=0.271 Sum_probs=27.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~ 258 (419)
+.|.|+||+||||+++.++..+ ++.+++.+
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 6799999999999999999998 88888765
No 185
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.07 E-value=0.00032 Score=63.94 Aligned_cols=31 Identities=13% Similarity=0.307 Sum_probs=27.1
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
.-++|.||||+||||+++.+|..++..+++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 3489999999999999999999999876654
No 186
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.06 E-value=0.00025 Score=66.71 Aligned_cols=45 Identities=24% Similarity=0.335 Sum_probs=36.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g 68 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC
Confidence 345556666666 789999999999999999999988888777654
No 187
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.06 E-value=0.00023 Score=70.35 Aligned_cols=43 Identities=23% Similarity=0.356 Sum_probs=33.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 344555666666 7899999999999999999998776665544
No 188
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.05 E-value=0.00038 Score=62.05 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=26.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.|||||||||+++.+|..+++.+++.
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 388999999999999999999998866553
No 189
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.04 E-value=0.00037 Score=63.86 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=26.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.|||||||||+++.+|..+++.+++.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 388999999999999999999999876654
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.04 E-value=0.00038 Score=62.27 Aligned_cols=28 Identities=25% Similarity=0.431 Sum_probs=24.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.|.|||||||||+++.+|+ +++.+++.
T Consensus 5 i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 77999999999999999998 88877653
No 191
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.03 E-value=0.00051 Score=60.02 Aligned_cols=30 Identities=33% Similarity=0.587 Sum_probs=27.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~ 258 (419)
+.|.|++|+||||++++++..+ +++++.++
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d 40 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 40 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhCCCcEEEEC
Confidence 7899999999999999999998 88887765
No 192
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.03 E-value=0.00015 Score=67.21 Aligned_cols=43 Identities=16% Similarity=0.341 Sum_probs=33.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 345556666667 8899999999999999999998765554444
No 193
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.02 E-value=0.00087 Score=60.50 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=23.4
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
++...-+.|.||||+|||||++++++.+.
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33333489999999999999999998653
No 194
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.02 E-value=0.0002 Score=70.21 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=34.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 345566666777 7899999999999999999998877666554
No 195
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.01 E-value=0.00042 Score=63.18 Aligned_cols=30 Identities=20% Similarity=0.448 Sum_probs=25.8
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
++-++|.||||+||+|.++.+|..+++..+
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 445888999999999999999999987644
No 196
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.00 E-value=0.00037 Score=62.14 Aligned_cols=28 Identities=32% Similarity=0.373 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.|.|||||||||+++.+|+ +++.+++.
T Consensus 4 i~i~G~~GsGKSTl~~~L~~-~g~~~i~~ 31 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFRE-LGAYVLDA 31 (204)
T ss_dssp EEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred EEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence 78999999999999999999 88777654
No 197
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.00 E-value=0.00026 Score=69.21 Aligned_cols=44 Identities=20% Similarity=0.410 Sum_probs=35.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.+..+.+..+.| +.|.||+|||||||+++||+.+..+-+.+.+.
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~ 60 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEET
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEEC
Confidence 344555666666 78999999999999999999998877766554
No 198
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.00 E-value=0.00041 Score=62.56 Aligned_cols=29 Identities=14% Similarity=0.155 Sum_probs=26.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..+++.+++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 78999999999999999999999877654
No 199
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.97 E-value=0.00052 Score=63.52 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=29.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.-+.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 59 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNG 59 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC
Confidence 44789999999999999999999988877776643
No 200
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.97 E-value=0.00026 Score=66.08 Aligned_cols=41 Identities=17% Similarity=0.304 Sum_probs=32.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I 62 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence 345555666666 88999999999999999999987665554
No 201
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.96 E-value=0.00046 Score=61.18 Aligned_cols=27 Identities=30% Similarity=0.758 Sum_probs=24.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+.|.|+|||||||+++.+|..++..++
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 679999999999999999999998654
No 202
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.96 E-value=0.00034 Score=63.42 Aligned_cols=30 Identities=10% Similarity=0.158 Sum_probs=26.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
.-++|.||||+||||+++.+|..++..+++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 348999999999999999999999975543
No 203
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.96 E-value=0.00085 Score=60.28 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEec
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH---FDVYDLELS 260 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~ 260 (419)
+.|.||+|+|||||+++|++.+. .....+...
T Consensus 25 v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d 59 (208)
T 3c8u_A 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59 (208)
T ss_dssp EEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecC
Confidence 78999999999999999999886 345555543
No 204
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.95 E-value=0.00063 Score=60.00 Aligned_cols=30 Identities=33% Similarity=0.326 Sum_probs=25.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~ 258 (419)
+.|.||+||||||+++.++..+ +++++...
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 6789999999999999999999 88887554
No 205
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.95 E-value=0.00052 Score=62.01 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=24.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
++|.||||+||+|.++.||..+++..+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~~~i 29 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGFVHI 29 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence 678999999999999999999987654
No 206
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.95 E-value=0.0005 Score=62.59 Aligned_cols=29 Identities=24% Similarity=0.429 Sum_probs=25.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++|.||||+||||+++.+|..++..+++.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 68999999999999999999998766543
No 207
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.95 E-value=0.0011 Score=60.38 Aligned_cols=27 Identities=22% Similarity=0.217 Sum_probs=22.7
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHH
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~ 249 (419)
++...-++|+||||+|||||+..+|..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 444444899999999999999999985
No 208
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.94 E-value=0.00092 Score=59.53 Aligned_cols=25 Identities=24% Similarity=0.400 Sum_probs=23.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
++|.||||+||||+++.+|..++..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 7899999999999999999998763
No 209
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.93 E-value=0.00051 Score=60.49 Aligned_cols=24 Identities=38% Similarity=0.631 Sum_probs=21.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||||+||||+++++++.++.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEECCCCCcHHHHHHHHhcccCC
Confidence 789999999999999999987654
No 210
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.91 E-value=0.00048 Score=63.66 Aligned_cols=36 Identities=17% Similarity=0.093 Sum_probs=24.4
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
+..+.+..++| +.|.||+|+||||+++.+++.++..
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 34444555566 7799999999999999999988643
No 211
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.91 E-value=0.00025 Score=66.09 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=33.2
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHH--cCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANY--LHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~--l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++. +..+-+.+.+.
T Consensus 18 vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 65 (250)
T 2d2e_A 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65 (250)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEEC
Confidence 345556666666 889999999999999999997 44555566554
No 212
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.90 E-value=0.00058 Score=63.16 Aligned_cols=31 Identities=16% Similarity=0.316 Sum_probs=26.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
.-++|.||||+||||+++.++..++..+++.
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3489999999999999999999998776644
No 213
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.90 E-value=0.00059 Score=62.90 Aligned_cols=29 Identities=38% Similarity=0.401 Sum_probs=26.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-+.|.|||||||||+++.+|..+++.+++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 48899999999999999999999987654
No 214
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.90 E-value=0.0005 Score=61.11 Aligned_cols=23 Identities=35% Similarity=0.699 Sum_probs=21.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+|||||++++++.+.
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999864
No 215
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.89 E-value=0.00036 Score=61.20 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
++|.||||+||||+++.++..++
T Consensus 4 I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 4 GIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999886
No 216
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.89 E-value=0.0005 Score=61.76 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=21.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+|||||+++|++.+.
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999985
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.89 E-value=0.00056 Score=60.75 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=27.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc-CCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL-HFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l-~~~v~~l~l 259 (419)
+.|.||||+||||+++.++..+ +++++++..
T Consensus 7 I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~ 38 (204)
T 2v54_A 7 IVFEGLDKSGKTTQCMNIMESIPANTIKYLNF 38 (204)
T ss_dssp EEEECCTTSSHHHHHHHHHHTSCGGGEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHCCCceEEEec
Confidence 7899999999999999999998 577777654
No 218
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.89 E-value=0.00042 Score=67.26 Aligned_cols=62 Identities=13% Similarity=0.328 Sum_probs=40.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc--------C--------ChHHHHHHHHH--ccCCeEEEEecCcc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV--------E--------GNKHLRKVLIA--TENKSILVVEDIDC 288 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~--------~--------~~~~l~~l~~~--~~~~sIlviddiD~ 288 (419)
..+++.||+|+|||||+++|++.+..+-..+.+... . +....+..+.. ..+|.+|++||.-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 348999999999999999999998654333322211 0 12223333333 35789999999863
No 219
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.88 E-value=0.00051 Score=67.48 Aligned_cols=44 Identities=23% Similarity=0.248 Sum_probs=35.7
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+..
T Consensus 44 L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G 89 (366)
T 3tui_C 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDG 89 (366)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETT
T ss_pred EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECC
Confidence 44555666667 889999999999999999999988877776644
No 220
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.86 E-value=0.00046 Score=66.24 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+.-.
T Consensus 115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~ 153 (305)
T 2v9p_A 115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS 153 (305)
T ss_dssp HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCE
T ss_pred hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCce
Confidence 344444455555 8899999999999999999998433
No 221
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.86 E-value=0.00074 Score=60.10 Aligned_cols=31 Identities=26% Similarity=0.211 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
-+.|.||+|+||||+++.+|..+++.+++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 4789999999999999999999998887643
No 222
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.85 E-value=0.00045 Score=64.71 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=33.3
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++.+.+..+.| +.|.||+|+|||||+++|++.+.. -+.+.+..
T Consensus 36 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g 80 (260)
T 2ghi_A 36 LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGG 80 (260)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETT
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECC
Confidence 44455555666 889999999999999999998874 56666644
No 223
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.85 E-value=0.0006 Score=65.83 Aligned_cols=32 Identities=28% Similarity=0.556 Sum_probs=28.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
+.++|.||+||||||++.++|..++..+++++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 45899999999999999999999998777764
No 224
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.83 E-value=0.0008 Score=61.70 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=27.5
Q ss_pred ccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 225 WKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 225 ~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
|++| +.|.|||||||||+++.+|..+++.+++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 4444 78999999999999999999999877653
No 225
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.83 E-value=0.00035 Score=66.62 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=35.8
Q ss_pred hhhhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 215 KDYYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 215 ~~~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
...++.+.+..++| +.|.||+|+|||||+++|++.+..+-+.+.+
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 97 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 97 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEEC
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 34566777777777 8899999999999999999998766555543
No 226
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.81 E-value=0.00059 Score=61.61 Aligned_cols=36 Identities=17% Similarity=-0.070 Sum_probs=26.2
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEE
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLE 258 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~ 258 (419)
++...-++|+||||+|||||++.+|..+ +..+..+.
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3434448999999999999999999665 34444443
No 227
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.81 E-value=0.00038 Score=65.47 Aligned_cols=45 Identities=27% Similarity=0.354 Sum_probs=33.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc--CCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL--HFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l--~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+ ..+-+.+.+..
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g 83 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKG 83 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETT
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECC
Confidence 455566666777 8899999999999999999984 34455665543
No 228
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.80 E-value=0.00079 Score=62.58 Aligned_cols=28 Identities=36% Similarity=0.600 Sum_probs=25.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+.|.||+||||||+++.+|..|++..++
T Consensus 30 I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 30 ITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 7899999999999999999999987664
No 229
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.80 E-value=0.00056 Score=59.61 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=18.2
Q ss_pred cccCc--eEEeCCCCCcHHHHHHH
Q 040638 224 AWKRG--YLLFGPLGTGKSSLIAA 245 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL~~a 245 (419)
..++| +.|.||||+|||||+++
T Consensus 5 ~i~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEECCTTSCHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 33455 88999999999999993
No 230
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.80 E-value=0.00052 Score=64.42 Aligned_cols=42 Identities=21% Similarity=0.425 Sum_probs=34.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+ | +.|.||+|+|||||+++|++.+ .+-+.+.+.
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~ 63 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFIN 63 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEET
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEEC
Confidence 4555666666 6 8899999999999999999999 877776553
No 231
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.78 E-value=0.00042 Score=66.59 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=36.0
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+...-+.+.+..
T Consensus 69 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G 115 (306)
T 3nh6_A 69 TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDG 115 (306)
T ss_dssp EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECC
Confidence 345556666666 889999999999999999999988777776644
No 232
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.77 E-value=0.0013 Score=67.04 Aligned_cols=31 Identities=26% Similarity=0.366 Sum_probs=25.4
Q ss_pred cCccccCc--eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 221 VGKAWKRG--YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 221 ~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.+..++| ++|.||+|+|||||++.||+.+.
T Consensus 286 Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 286 LNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 34444555 78999999999999999999874
No 233
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.76 E-value=0.00041 Score=62.03 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
+.|.|+|||||||+++.++..++..
T Consensus 13 I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 13 IVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 7899999999999999999987543
No 234
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.75 E-value=0.00079 Score=59.36 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+.|.||+|+|||||++++++.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 478999999999999999999875
No 235
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.75 E-value=0.00071 Score=61.96 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=21.5
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMA 247 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA 247 (419)
|++...-++|.||||+|||||+++++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 34444448999999999999999999
No 236
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.74 E-value=0.00082 Score=58.95 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+.|.||+|+|||||++++++.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 388999999999999999999875
No 237
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.72 E-value=0.0017 Score=59.43 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=25.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+++.|+||+||||++-++|..+ |+++.-+.+
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 8899999999999999998776 677665554
No 238
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.72 E-value=0.00051 Score=68.19 Aligned_cols=45 Identities=24% Similarity=0.419 Sum_probs=35.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..+.| +.|.||+|||||||+++||+.+. +-+.+.+...
T Consensus 36 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~ 82 (390)
T 3gd7_A 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGV 82 (390)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSC
T ss_pred EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCE
Confidence 345556666667 88999999999999999999887 6677766543
No 239
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=96.69 E-value=0.0017 Score=65.80 Aligned_cols=53 Identities=28% Similarity=0.357 Sum_probs=34.2
Q ss_pred ccCCCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 185 LDHPSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 185 ~~~p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-..|.+|++| .+++++.+. .+..++... .+.+++.||||||||+++.+++..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~-~~~~~i~~~----------~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFN-IVMKAIKEK----------KHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCC--CHHHHHHHH-HHHHHHHSS----------SCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccC--CHHHHHHHH-HHHHHHhcC----------CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3456788876 455555543 333333221 2258999999999999999999887
No 240
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.69 E-value=0.0029 Score=66.92 Aligned_cols=65 Identities=22% Similarity=0.274 Sum_probs=39.5
Q ss_pred CccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccCChH
Q 040638 190 TFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVEGNK 266 (419)
Q Consensus 190 ~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~~~~ 266 (419)
.|-+-..++.++++|...+. . +.-.|++||||||||+++..+...+ +..+.-+.. +|.
T Consensus 184 ~~~~~~LN~~Q~~AV~~al~----~-----------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~----TN~ 244 (646)
T 4b3f_X 184 TFFNTCLDTSQKEAVLFALS----Q-----------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP----SNI 244 (646)
T ss_dssp CCSSTTCCHHHHHHHHHHHH----C-----------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES----SHH
T ss_pred cccCCCCCHHHHHHHHHHhc----C-----------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC----chH
Confidence 33333457888888765442 1 1127899999999998776665544 455544444 455
Q ss_pred HHHHHHH
Q 040638 267 HLRKVLI 273 (419)
Q Consensus 267 ~l~~l~~ 273 (419)
.+..++.
T Consensus 245 AvD~i~e 251 (646)
T 4b3f_X 245 AVDNLVE 251 (646)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 241
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.69 E-value=0.0011 Score=59.11 Aligned_cols=29 Identities=28% Similarity=0.379 Sum_probs=26.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.|.|++||||||+++.++..+++.+++.
T Consensus 15 IgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 78999999999999999999999888764
No 242
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.69 E-value=0.0021 Score=73.45 Aligned_cols=45 Identities=22% Similarity=0.349 Sum_probs=36.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..++| +.+.||+|+|||||++++.+++...-+.+.+..
T Consensus 433 vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG 479 (1321)
T 4f4c_A 433 ILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDG 479 (1321)
T ss_dssp SEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETT
T ss_pred eeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCC
Confidence 345556666666 889999999999999999999988877766543
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.69 E-value=0.00079 Score=59.83 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=21.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+.|.||||+||||+++.+++.+.
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhhC
Confidence 378999999999999999999873
No 244
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.68 E-value=0.0012 Score=61.60 Aligned_cols=31 Identities=32% Similarity=0.359 Sum_probs=26.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH---cCCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY---LHFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~---l~~~v~~l~ 258 (419)
-++|.|+||+||||+++.++.. +++.++.++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 3889999999999999999998 677776443
No 245
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.67 E-value=0.0029 Score=56.42 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=25.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+.|.||+|+||||+++.+++.+ +.++..+..
T Consensus 25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 7899999999999999999976 555555543
No 246
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.67 E-value=0.0008 Score=58.78 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=24.6
Q ss_pred ccccCc-eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 223 KAWKRG-YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 223 ~~~~rG-~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+....| .+|+||+|+||||+++||+..++.
T Consensus 22 ~~~~~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 22 IPFSKGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EECCSSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EecCCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 444445 679999999999999999998864
No 247
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.65 E-value=0.0011 Score=59.22 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.0
Q ss_pred cccCceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 224 AWKRGYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 224 ~~~rG~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.++-++|.||||+||||+++.++..++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3344588999999999999999999885
No 248
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.64 E-value=0.00097 Score=59.57 Aligned_cols=25 Identities=36% Similarity=0.537 Sum_probs=22.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+-+.|.||+|+|||||++.+++.+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4588999999999999999999764
No 249
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.63 E-value=0.0011 Score=59.22 Aligned_cols=24 Identities=29% Similarity=0.301 Sum_probs=22.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||+|+|||||++.+++.++.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~~ 32 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLGE 32 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHGG
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998873
No 250
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.62 E-value=0.0016 Score=63.65 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=30.6
Q ss_pred cccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 224 AWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+..+| +.|.||+|+|||||++.|++.+..+...+.+
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~ 104 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLAL 104 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEE
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 44556 8899999999999999999999988776554
No 251
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.61 E-value=0.0026 Score=61.34 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=29.8
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---------CCcEEEEEecc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---------HFDVYDLELSS 261 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---------~~~v~~l~l~~ 261 (419)
|++...-++|+||||+|||+|+..+|... +..+..++...
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 44544558999999999999999999765 44566665543
No 252
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.61 E-value=0.0017 Score=65.39 Aligned_cols=39 Identities=38% Similarity=0.457 Sum_probs=32.4
Q ss_pred ccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 223 KAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 223 ~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
++..+| +.|.||+|||||||+++||+....+.+.+.+..
T Consensus 152 l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G 192 (438)
T 2dpy_A 152 LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIG 192 (438)
T ss_dssp SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEES
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEec
Confidence 455666 889999999999999999999998877666543
No 253
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.61 E-value=0.0011 Score=60.53 Aligned_cols=24 Identities=42% Similarity=0.653 Sum_probs=22.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||+|+|||||++++++.+..
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~p 42 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQPL 42 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSCT
T ss_pred EEEECCCCCCHHHHHHHHhccCCC
Confidence 889999999999999999998864
No 254
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.59 E-value=0.0013 Score=59.21 Aligned_cols=29 Identities=38% Similarity=0.526 Sum_probs=25.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-+.|.|++|+||||+++.++. +++.+++.
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 378999999999999999998 88877654
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.58 E-value=0.0077 Score=57.38 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=26.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEec
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLELS 260 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l~ 260 (419)
+-++|.||+|+||||++..+|..+ |..+.-+...
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 348899999999999999999876 3455555543
No 256
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.56 E-value=0.0013 Score=58.22 Aligned_cols=29 Identities=31% Similarity=0.525 Sum_probs=25.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-+.|.|++||||||+++.+|.. ++.+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~-g~~~id~ 38 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW-GYPVLDL 38 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT-TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-CCEEEcc
Confidence 3889999999999999999998 8777754
No 257
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.55 E-value=0.0021 Score=62.22 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+.|.||+|+||||+++.+|+.+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~ 154 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLK 154 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999999873
No 258
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.55 E-value=0.0078 Score=65.94 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=24.0
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHH
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~ 249 (419)
...+.+....| ++|.||+|+||||+++.++..
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34444444444 889999999999999998753
No 259
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.54 E-value=0.0012 Score=59.34 Aligned_cols=24 Identities=29% Similarity=0.386 Sum_probs=22.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||+|+||||+++.+++.+..
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTTC
T ss_pred EEEECcCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999998864
No 260
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.52 E-value=0.0018 Score=59.32 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=22.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||||+||||+++.++..++.
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 778899999999999999999973
No 261
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.52 E-value=0.0014 Score=61.43 Aligned_cols=24 Identities=46% Similarity=0.812 Sum_probs=21.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
++|.||+|+||||+++++++.+..
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCCC
Confidence 889999999999999999998743
No 262
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.52 E-value=0.0015 Score=58.52 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+|||||++++++...
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 78999999999999999998865
No 263
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.52 E-value=0.0026 Score=60.97 Aligned_cols=57 Identities=14% Similarity=0.098 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhhchhhhhhcCcc--ccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 200 MKKMIMDDLERFLKRKDYYRRVGKA--WKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 200 ~k~~i~~~l~~~~~~~~~~~~~g~~--~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+++.+.+.+...+.... .+.+. .++-+++.||+|+||||+++.+|+.+ +..+.-+..
T Consensus 79 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 79 ALESLKEIILEILNFDT---KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp HHHHHHHHHHHHTCSCC---CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHhCCCC---CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 55556666666664332 22222 23348899999999999999999887 445554444
No 264
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.49 E-value=0.00084 Score=61.26 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=17.3
Q ss_pred CccccCc--eEEeCCCCCcHHHHHHHHH-HHcC
Q 040638 222 GKAWKRG--YLLFGPLGTGKSSLIAAMA-NYLH 251 (419)
Q Consensus 222 g~~~~rG--~LL~GPpGtGKTsL~~aiA-~~l~ 251 (419)
.+..+.| +.|.||+|+||||++++++ +.+.
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3444555 7899999999999999999 8763
No 265
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.48 E-value=0.0013 Score=58.42 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.|.||+|+|||||++.||+.+
T Consensus 4 i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp EEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHhhc
Confidence 7899999999999999999987
No 266
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.48 E-value=0.0044 Score=55.33 Aligned_cols=33 Identities=24% Similarity=0.306 Sum_probs=26.8
Q ss_pred Cc-eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 227 RG-YLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 227 rG-~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+| +++|+++|.||||.|-++|-.. |..+.-+.+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF 64 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQF 64 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe
Confidence 45 8899999999999999987554 777777754
No 267
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.46 E-value=0.0021 Score=57.76 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=27.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-+.|.|++||||||+++.+|..+++.+++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 488999999999999999999999887764
No 268
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.45 E-value=0.016 Score=48.52 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 6 i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999864
No 269
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.44 E-value=0.00073 Score=60.46 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=21.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+.|.|+||+||||+++.++..++
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 388999999999999999998764
No 270
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.43 E-value=0.0048 Score=60.03 Aligned_cols=39 Identities=15% Similarity=0.065 Sum_probs=28.4
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc---------CCcEEEEEecc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL---------HFDVYDLELSS 261 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l---------~~~v~~l~l~~ 261 (419)
++...-++|+||||+|||+|+..+|... +..+..++...
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4434448999999999999999999862 44555555543
No 271
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=96.43 E-value=0.0058 Score=69.87 Aligned_cols=43 Identities=21% Similarity=0.354 Sum_probs=32.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.++.+.+..+.| +.|.||+|+|||||++++.+.+...-+.+.+
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1138 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEE
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEE
Confidence 345555555666 8899999999999999999988765444444
No 272
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.42 E-value=0.0014 Score=58.61 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc-CCcE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL-HFDV 254 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l-~~~v 254 (419)
+.|.||||+||||+++.+++.+ +..+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~~~~~~ 50 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHLPNCSV 50 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTSTTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCcEE
Confidence 7899999999999999999987 4433
No 273
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.41 E-value=0.002 Score=67.29 Aligned_cols=31 Identities=35% Similarity=0.328 Sum_probs=24.9
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDL 257 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l 257 (419)
+-+++.||||||||+++++++..+ +..+.-+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 348899999999999999998866 4555544
No 274
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.41 E-value=0.0016 Score=57.17 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=21.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
++|.|+||+||||+++.+|..++
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999874
No 275
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.38 E-value=0.00093 Score=65.64 Aligned_cols=27 Identities=30% Similarity=0.538 Sum_probs=23.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
-++|.||+|+|||||+++|++.+..+-
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~ 203 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQ 203 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTS
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCc
Confidence 489999999999999999999986543
No 276
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.36 E-value=0.0017 Score=60.16 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=24.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
-+.|.|||||||||+++.++..++..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 48899999999999999999999876
No 277
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.35 E-value=0.018 Score=63.30 Aligned_cols=21 Identities=29% Similarity=0.271 Sum_probs=18.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~ 248 (419)
-++|.||+|+||||+++.+|.
T Consensus 664 i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 388999999999999999953
No 278
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.34 E-value=0.0031 Score=60.87 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=21.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+||||||+++++++.++
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 78999999999999999999886
No 279
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.34 E-value=0.0054 Score=61.59 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHhhchh-hhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 198 TDMKKMIMDDLERFLKRKD-YYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 198 ~~~k~~i~~~l~~~~~~~~-~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
+.+++.+.+.+...+.... ..... ...++-+++.||||+||||++..+|..+ +..+.-+.+.
T Consensus 69 ~~v~~~v~~eL~~~L~~~~~~~~~~-~~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 69 EWFISIVYDELSKLFGGDKEPNVNP-TKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCCSC-CSSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHHHHHHHHHHhcCccccccccc-cCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4455666666666665421 11111 1123448899999999999999999877 5566555543
No 280
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.32 E-value=0.0017 Score=61.13 Aligned_cols=29 Identities=28% Similarity=0.220 Sum_probs=23.2
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
|++...-++|+||||+|||||+..+|..+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34433448999999999999999999755
No 281
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.30 E-value=0.0098 Score=54.26 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=22.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l 257 (419)
++++||||+||||++..++..+ +..++.+
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 7788999999999888777665 4555555
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.30 E-value=0.0059 Score=70.67 Aligned_cols=70 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEecccC---------------------ChHHHHHHHHH---
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELSSVE---------------------GNKHLRKVLIA--- 274 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~~~~---------------------~~~~l~~l~~~--- 274 (419)
|++..+.++|+||||||||+|+.++|... +..+..++..... ....+.+++..
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~ 109 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 109 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHh
Confidence 56677779999999999999999987652 5666666665431 12233343332
Q ss_pred ccCCeEEEEecCccccc
Q 040638 275 TENKSILVVEDIDCCTE 291 (419)
Q Consensus 275 ~~~~sIlviddiD~~~~ 291 (419)
...+.+||||++..+..
T Consensus 110 ~~~~~LVVIDSLt~L~~ 126 (1706)
T 3cmw_A 110 SGAVDVIVVDSVAALTP 126 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 35689999999998875
No 283
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.27 E-value=0.0021 Score=60.88 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=22.0
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
..-++|.||||+|||||++.+|..+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3338899999999999999999876
No 284
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.27 E-value=0.0019 Score=58.93 Aligned_cols=38 Identities=24% Similarity=0.085 Sum_probs=26.0
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
|++...-++|+||||+|||+|+..+|..+ +..+..+..
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 34444448999999999999988776543 344444443
No 285
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.27 E-value=0.0018 Score=60.89 Aligned_cols=30 Identities=20% Similarity=0.195 Sum_probs=21.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
+.|.||+|+|||||+++|++....+-..+.
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~~~~G~i~ 34 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQVSRKASSW 34 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC-------
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 789999999999999999999876655443
No 286
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.26 E-value=0.0057 Score=66.18 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=23.9
Q ss_pred hhhcCcc-ccCceEEeCCCCCcHHHHHHHHHHH
Q 040638 218 YRRVGKA-WKRGYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 218 ~~~~g~~-~~rG~LL~GPpGtGKTsL~~aiA~~ 249 (419)
...+.+. ..+-++|.||+|+||||+++++++.
T Consensus 598 lndisl~~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 598 ANPLNLSPQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eecccccCCCcEEEEECCCCCChHHHHHHHHHH
Confidence 3444444 1233889999999999999999975
No 287
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.25 E-value=0.0075 Score=51.03 Aligned_cols=22 Identities=32% Similarity=0.419 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+++.|++|+|||||++++.+.-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 288
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.24 E-value=0.0031 Score=61.29 Aligned_cols=33 Identities=30% Similarity=0.283 Sum_probs=25.8
Q ss_pred hhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHc
Q 040638 218 YRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 218 ~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.+.+.+..++| +.|.||||+|||||++++++.+
T Consensus 45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33444444555 7899999999999999999876
No 289
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.24 E-value=0.0021 Score=63.30 Aligned_cols=24 Identities=46% Similarity=0.787 Sum_probs=22.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+++.||+|+||||+++++++.+.
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhcC
Confidence 389999999999999999999874
No 290
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.22 E-value=0.0026 Score=65.44 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=24.6
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
+.++++.||+|+||||+++++++.+..+
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~ 287 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPD 287 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCC
Confidence 3459999999999999999999998654
No 291
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.21 E-value=0.0018 Score=58.58 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=20.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+.|.||+|+|||||+++|++.
T Consensus 25 ~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 25 VFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEECCTTSSTTHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999987
No 292
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.20 E-value=0.0022 Score=60.81 Aligned_cols=29 Identities=24% Similarity=0.199 Sum_probs=24.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc-CCcEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL-HFDVY 255 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l-~~~v~ 255 (419)
.-++|.||||+||||+++.++..+ ++.++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 348899999999999999999864 65544
No 293
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0073 Score=60.72 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=40.1
Q ss_pred hhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 198 TDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 198 ~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
..+++.+.+.|...+..+....... ..+.-+++.||||+||||++..+|.++ +..+.-+.+.
T Consensus 73 ~~v~~~l~~eL~~~L~~~~~~~~~~-~~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 73 EHIIKIVYEELTKFLGTEAKPIEIK-EKPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCCCCC-SSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCcccccccC-CCCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 4556667777777665422111111 123458899999999999999999877 5556555543
No 294
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.15 E-value=0.0083 Score=57.83 Aligned_cols=61 Identities=26% Similarity=0.407 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhhchhh---hhhcCcccc--CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 200 MKKMIMDDLERFLKRKDY---YRRVGKAWK--RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 200 ~k~~i~~~l~~~~~~~~~---~~~~g~~~~--rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
+++.+.+.+...+..... ...+.+..+ +-+++.||+|+||||++..+|..+ +..+.-+++.
T Consensus 74 ~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 74 IKDALVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp HHHHHHHHHHHHHHCSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHhCcccccccccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 455555566565543321 023333333 348899999999999999999887 4555555443
No 295
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.14 E-value=0.0039 Score=55.28 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=22.3
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
|-++|.||+|+|||||++.+.....-
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 44889999999999999999887643
No 296
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.14 E-value=0.003 Score=63.25 Aligned_cols=50 Identities=26% Similarity=0.361 Sum_probs=34.7
Q ss_pred CCCccccccchhhHHHHHHHHHHHhhchhhhhhcCccccCc-eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 188 PSTFDTLAMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRG-YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 188 p~~f~~l~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG-~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.+++++....+.+..+ .++ + ..+.| +++.||+|+||||++++|++.+..
T Consensus 143 ~~~l~~Lg~~~~~~~~L-~~l---~-----------~~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNF-RRL---I-----------KRPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCCGGGSCCCHHHHHHH-HHH---H-----------TSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCCHHHcCCCHHHHHHH-HHH---H-----------HhcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 34678887766544332 322 1 11344 789999999999999999999864
No 297
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.14 E-value=0.0025 Score=66.65 Aligned_cols=45 Identities=22% Similarity=0.342 Sum_probs=35.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||++++++.+..+-+.+.+..
T Consensus 358 ~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 455556666666 889999999999999999999987766666544
No 298
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.12 E-value=0.011 Score=59.38 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=26.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+-+++.||||+||||++..+|..+ +..+.-+++
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 458899999999999999999987 355554444
No 299
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.12 E-value=0.0023 Score=62.05 Aligned_cols=32 Identities=31% Similarity=0.442 Sum_probs=27.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
-++|.||+|+|||+|+..+|..++..+++.+-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 48899999999999999999999877765543
No 300
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.12 E-value=0.0028 Score=56.95 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=25.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC----CcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH----FDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~----~~v~~l~ 258 (419)
-++|.|+||+||||+++.++..++ .+++.++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 378899999999999999999875 3455454
No 301
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.11 E-value=0.003 Score=59.65 Aligned_cols=28 Identities=32% Similarity=0.303 Sum_probs=24.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
+.|.|+|||||||+++.++ .+++.+++.
T Consensus 78 I~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 8899999999999999999 578776543
No 302
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.09 E-value=0.0032 Score=60.56 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.9
Q ss_pred ccCc--eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 225 WKRG--YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 225 ~~rG--~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
.++| +.|.||+|+|||||+++|++.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3445 789999999999999999998854
No 303
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.08 E-value=0.0032 Score=56.47 Aligned_cols=29 Identities=14% Similarity=0.217 Sum_probs=27.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-+.|.||+|||||++++.+|..|++++++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 47899999999999999999999999885
No 304
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.08 E-value=0.023 Score=47.41 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++++.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 889999999999999999865
No 305
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.08 E-value=0.009 Score=50.42 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 889999999999999999864
No 306
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.07 E-value=0.0024 Score=66.77 Aligned_cols=45 Identities=20% Similarity=0.365 Sum_probs=37.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+++..+.| +.|.||+|+|||||++++++.+..+-+.+.+..
T Consensus 358 ~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 455666666777 889999999999999999999988888777654
No 307
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.06 E-value=0.003 Score=56.56 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=23.4
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
.++++|.||+|+|||+|+..++...+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 45799999999999999999998765
No 308
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.06 E-value=0.003 Score=61.31 Aligned_cols=30 Identities=20% Similarity=0.327 Sum_probs=25.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
-++|.||+|+||||++..+|..++..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 488999999999999999999998655443
No 309
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.04 E-value=0.0016 Score=58.25 Aligned_cols=24 Identities=21% Similarity=0.351 Sum_probs=21.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||+|+||||+++.++..++.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 678999999999999999998853
No 310
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.00 E-value=0.0029 Score=60.61 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
-+.|.||+|+||||+++.+|+.+..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 38899999999999999999988543
No 311
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.00 E-value=0.0027 Score=63.54 Aligned_cols=28 Identities=21% Similarity=0.159 Sum_probs=24.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
-++|.||||+||||+++.++..+++.++
T Consensus 260 lIil~G~pGSGKSTla~~L~~~~~~~~i 287 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHLVSAGYVHV 287 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHTGGGTCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcEEE
Confidence 3889999999999999999998876544
No 312
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.99 E-value=0.03 Score=46.85 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.99 E-value=0.0042 Score=59.03 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=22.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
-+.+.||+|+|||||++.+++.++.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 3789999999999999999998864
No 314
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=95.98 E-value=0.0032 Score=61.68 Aligned_cols=27 Identities=22% Similarity=0.331 Sum_probs=24.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
-+.|.||+|||||||+++|++.+..+-
T Consensus 172 k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 172 TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 389999999999999999999987764
No 315
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.95 E-value=0.01 Score=59.06 Aligned_cols=26 Identities=38% Similarity=0.406 Sum_probs=20.6
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMA 247 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA 247 (419)
|++...-++|+||||||||||+..+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHH
Confidence 34444448999999999999999765
No 316
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.95 E-value=0.0024 Score=64.82 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=25.4
Q ss_pred cCccccCc--eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 221 VGKAWKRG--YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 221 ~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.+..+.| +.|.||+|+|||||+++|++.+.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~ 163 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL 163 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCccc
Confidence 44444555 89999999999999999999873
No 317
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.94 E-value=0.015 Score=50.58 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 318
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.94 E-value=0.035 Score=47.51 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++++.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3899999999999999999864
No 319
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.93 E-value=0.025 Score=48.61 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 320
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.91 E-value=0.029 Score=47.12 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||++++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 889999999999999999863
No 321
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.90 E-value=0.0083 Score=57.56 Aligned_cols=28 Identities=18% Similarity=0.244 Sum_probs=22.7
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHH
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~ 249 (419)
|++...-++|+||||+|||+|+..+|..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444899999999999999999865
No 322
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.90 E-value=0.018 Score=52.71 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=25.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~ 258 (419)
.++++||+|+|||.++.+++..++..+..+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 3889999999999999999888866655543
No 323
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.89 E-value=0.0024 Score=66.89 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=38.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..+.| +.|.||+|+|||||++++++.+..+-+.+.+...
T Consensus 359 vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~ 406 (595)
T 2yl4_A 359 IFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGH 406 (595)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTE
T ss_pred cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCE
Confidence 456666777777 8899999999999999999999988888776543
No 324
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.89 E-value=0.014 Score=50.91 Aligned_cols=22 Identities=27% Similarity=0.543 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3899999999999999999874
No 325
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.88 E-value=0.016 Score=49.56 Aligned_cols=22 Identities=36% Similarity=0.619 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 326
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.88 E-value=0.003 Score=66.19 Aligned_cols=46 Identities=20% Similarity=0.434 Sum_probs=37.6
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..+.| +.|.||+|+|||||++++++.+..+-+.+.+...
T Consensus 370 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 417 (598)
T 3qf4_B 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGI 417 (598)
T ss_dssp SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTE
T ss_pred cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCE
Confidence 455566666666 8899999999999999999999988888777553
No 327
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.88 E-value=0.015 Score=49.05 Aligned_cols=20 Identities=40% Similarity=0.625 Sum_probs=18.4
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|+||+|||||++++.+
T Consensus 5 i~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999999864
No 328
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.88 E-value=0.0021 Score=67.05 Aligned_cols=46 Identities=17% Similarity=0.339 Sum_probs=36.7
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..++| +.|.||+|+|||||++++++.+..+-+.+.+...
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 403 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGH 403 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTE
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCE
Confidence 344555556666 8899999999999999999999888887776543
No 329
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.87 E-value=0.0043 Score=59.42 Aligned_cols=32 Identities=22% Similarity=0.528 Sum_probs=26.7
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHcCCcEEEE
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYLHFDVYDL 257 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l~~~v~~l 257 (419)
++-+++.||+|+|||+|+..+|..++..++..
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 34578999999999999999999998665543
No 330
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.85 E-value=0.0039 Score=53.04 Aligned_cols=22 Identities=45% Similarity=0.608 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.+++||+|+|||+++.||.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998655
No 331
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.85 E-value=0.049 Score=55.75 Aligned_cols=42 Identities=7% Similarity=0.111 Sum_probs=33.1
Q ss_pred CEEEEEecCCCC--CCCccccCCCCcceEEEeCCCCHHHHHHHHHH
Q 040638 347 ERIIVFTTNHKD--RLDPALLRPGRMDVHIHMSYCTLCGFKILASN 390 (419)
Q Consensus 347 ~~iiV~tTN~~~--~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~ 390 (419)
++-+|++|.++. .|+..+.. -+...|.+...+..+.+.++..
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~--n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKA--NIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--HCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEecCCccccccHHHHh--hcCCeEEEEcCCHHHHHHhcCC
Confidence 367778888876 68877776 7888889999999988887753
No 332
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.85 E-value=0.044 Score=47.91 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999854
No 333
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.84 E-value=0.005 Score=63.47 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.2
Q ss_pred CceEEeCCCCCcHHHHHHH--HHHHcC
Q 040638 227 RGYLLFGPLGTGKSSLIAA--MANYLH 251 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~a--iA~~l~ 251 (419)
.-++|.||||||||||+++ +++.+.
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 3489999999999999999 567664
No 334
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.84 E-value=0.0079 Score=54.72 Aligned_cols=38 Identities=26% Similarity=0.166 Sum_probs=27.0
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHH----cCCcEEEEEe
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANY----LHFDVYDLEL 259 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~----l~~~v~~l~l 259 (419)
|++...-++++|+||+|||+++..+|.. .+..++.+++
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 3444444999999999999999876533 2556666654
No 335
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.84 E-value=0.014 Score=49.23 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=19.0
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|++|+|||||+.++.+
T Consensus 9 i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 89999999999999999986
No 336
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.81 E-value=0.006 Score=55.91 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=25.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
+-|.||||+||||+++.+|..+++..+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 6688999999999999999999887664
No 337
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.79 E-value=0.022 Score=48.49 Aligned_cols=23 Identities=30% Similarity=0.658 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-+++.|++|+|||||+.++.+.-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 38999999999999999998643
No 338
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.75 E-value=0.0042 Score=59.46 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+|||||++++++.++
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 78999999999999999999887
No 339
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=95.72 E-value=0.0028 Score=55.44 Aligned_cols=34 Identities=24% Similarity=0.254 Sum_probs=27.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCc---EEEEEecc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFD---VYDLELSS 261 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~---v~~l~l~~ 261 (419)
-+.|.||+|+|||||++.|++.+... ...+.+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 47899999999999999999998654 67666544
No 340
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.71 E-value=0.033 Score=48.01 Aligned_cols=22 Identities=27% Similarity=0.508 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 341
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.70 E-value=0.0035 Score=65.62 Aligned_cols=46 Identities=22% Similarity=0.343 Sum_probs=37.5
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..+.| +.|.||+|+|||||++++++.+..+-+.+.+...
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 445555666666 8899999999999999999999988888777554
No 342
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.69 E-value=0.0061 Score=53.38 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=26.9
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
..-+.+.||+|+|||||++.+++.+ +..+..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 3458899999999999999999875 455665554
No 343
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.68 E-value=0.011 Score=52.10 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=27.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
+|++|++|+|||+++..+|.. +.+++.+.....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 689999999999999999987 777777776543
No 344
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.66 E-value=0.0098 Score=66.04 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=18.4
Q ss_pred CceEEeCCCCCcHHHHHHHH
Q 040638 227 RGYLLFGPLGTGKSSLIAAM 246 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~ai 246 (419)
+-++|.||+|+||||+++++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHH
Confidence 44899999999999999999
No 345
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.64 E-value=0.0043 Score=59.18 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=23.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+.|.||||+|||||+++|++....+...+..
T Consensus 172 v~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 172 STMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp EEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred EEEECCCCCcHHHHHHHhcccccccccceec
Confidence 7899999999999999999998887766654
No 346
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.63 E-value=0.0059 Score=53.88 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++|.||+|+|||||++++++..
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999863
No 347
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.0048 Score=63.79 Aligned_cols=40 Identities=15% Similarity=0.239 Sum_probs=30.0
Q ss_pred hhhhhcCcccc-Cc--eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 216 DYYRRVGKAWK-RG--YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 216 ~~~~~~g~~~~-rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+-|+-.+++.+ .| +.|.||+|+|||||+++|++.+..+..
T Consensus 12 ~~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 12 NGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp TSCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 34444555544 45 789999999999999999998865533
No 348
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.59 E-value=0.049 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=20.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+++.|++|+|||||++.+.+..
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 8999999999999999998754
No 349
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.59 E-value=0.02 Score=57.32 Aligned_cols=59 Identities=19% Similarity=0.170 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 199 DMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 199 ~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
.+++.+.+.+...+.... ..+.+..++.+++.||+|+||||++..+|..+ +..+.-+.+
T Consensus 73 ~~~~~v~~~L~~~~~~~~--~~i~l~~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 73 VILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp HHHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCc--ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 455666666766665432 23333323347788999999999999999887 445554444
No 350
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.59 E-value=0.0023 Score=58.61 Aligned_cols=26 Identities=38% Similarity=0.401 Sum_probs=22.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDV 254 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v 254 (419)
+.|.||+|||||||+++|+..+..+-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEECCCCCCHHHHHHHHhcccccCC
Confidence 45789999999999999999986543
No 351
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.58 E-value=0.024 Score=47.57 Aligned_cols=21 Identities=19% Similarity=0.300 Sum_probs=19.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999764
No 352
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.57 E-value=0.0055 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.|.||+|+|||||++.+++..
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999865
No 353
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.56 E-value=0.044 Score=47.41 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 354
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.54 E-value=0.006 Score=58.50 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-+++.||+|+|||+|+..+|..++..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 37889999999999999999988765443
No 355
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.51 E-value=0.0084 Score=62.92 Aligned_cols=31 Identities=32% Similarity=0.521 Sum_probs=28.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
++|.|+||+||||++++++..| +.+++.++.
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 8899999999999999999999 899888753
No 356
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.51 E-value=0.017 Score=54.99 Aligned_cols=61 Identities=21% Similarity=0.253 Sum_probs=40.2
Q ss_pred hhhHHHHHHHHHHHhhchhhhhh-cCccc-cCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEec
Q 040638 198 TDMKKMIMDDLERFLKRKDYYRR-VGKAW-KRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLELS 260 (419)
Q Consensus 198 ~~~k~~i~~~l~~~~~~~~~~~~-~g~~~-~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l~ 260 (419)
+.+++.+.+.+...+.... .. +.+.. ++-+++.||+|+||||++..+|..+ +..+.-+++.
T Consensus 70 ~~~~~~~~~~l~~~~~~~~--~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 70 EWFIKIVYDELSNLFGGDK--EPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp HHHHHHHHHHHHHHTTCSC--CCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3456667777776665432 22 22222 3337788999999999999999887 5566655554
No 357
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.51 E-value=0.053 Score=60.01 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=36.1
Q ss_pred ccchhhHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHH------cCCcEEEEEecc
Q 040638 195 AMVTDMKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANY------LHFDVYDLELSS 261 (419)
Q Consensus 195 ~g~~~~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~------l~~~v~~l~l~~ 261 (419)
+|-++.+++|.+.+... + ..+-+.++||+|.||||||+.+++. +...++-++++.
T Consensus 131 VGRe~eLeeL~elL~~~----d--------~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL----R--------PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC----C--------SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCcHHHHHHHHHHHhcc----C--------CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 56666667776655321 0 1345889999999999999999863 233355555543
No 358
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.50 E-value=0.019 Score=48.49 Aligned_cols=20 Identities=40% Similarity=0.627 Sum_probs=19.0
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|++|+|||||+.++.+
T Consensus 6 i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 6 VAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 88999999999999999986
No 359
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.49 E-value=0.029 Score=48.54 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++++.
T Consensus 24 i~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 899999999999999999865
No 360
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.48 E-value=0.02 Score=50.92 Aligned_cols=30 Identities=20% Similarity=0.538 Sum_probs=24.6
Q ss_pred eEEeCCCCCcHH-HHHHHHHHHc--CCcEEEEE
Q 040638 229 YLLFGPLGTGKS-SLIAAMANYL--HFDVYDLE 258 (419)
Q Consensus 229 ~LL~GPpGtGKT-sL~~aiA~~l--~~~v~~l~ 258 (419)
+++|||.|+||| .|++++.++. +..+..+.
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 789999999999 8999998876 55666554
No 361
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.46 E-value=0.096 Score=54.16 Aligned_cols=41 Identities=5% Similarity=0.095 Sum_probs=33.7
Q ss_pred CEEEEEecCCCC--CCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 040638 347 ERIIVFTTNHKD--RLDPALLRPGRMDVHIHMSYCTLCGFKILAS 389 (419)
Q Consensus 347 ~~iiV~tTN~~~--~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~ 389 (419)
++-+|++|.+|. .|+..++. -|...|.+...+..+-+.++.
T Consensus 378 GIhLIlaTQRPs~d~I~~~Ira--n~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 378 GIHLILATQRPSVDVITGLIKA--NIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TEEEEEEESCCCTTTSCHHHHH--TCCEEEEECCSCHHHHHHHHS
T ss_pred CeEEEEEecCcccccccHHHHh--hhccEEEEEcCCHHHHHHhcC
Confidence 478889998887 78888876 788889999999988887763
No 362
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.45 E-value=0.021 Score=58.39 Aligned_cols=59 Identities=12% Similarity=0.205 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHhhchhhhhhcCc--cccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 199 DMKKMIMDDLERFLKRKDYYRRVGK--AWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 199 ~~k~~i~~~l~~~~~~~~~~~~~g~--~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
.+.+.+.+.|...+..... .+.. ..++-+++.|+||+||||++..+|..+ +..+.-+++
T Consensus 74 ~~~~~v~~eL~~ll~~~~~--~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 74 MIQHAVFKELVKLVDPGVK--AWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp HHHHHHHHHHHHHHCCCCC--CCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHHHHHHHhccccc--hhccccCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 3455555666666543211 1111 123458899999999999999999876 566666655
No 363
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.45 E-value=0.0066 Score=62.79 Aligned_cols=29 Identities=38% Similarity=0.502 Sum_probs=24.6
Q ss_pred ccCc--eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 225 WKRG--YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 225 ~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
...| +.|.||+|+|||||+++|++.+..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~ 74 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPN 74 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 3445 8899999999999999999987554
No 364
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.45 E-value=0.014 Score=50.85 Aligned_cols=32 Identities=16% Similarity=0.203 Sum_probs=26.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
-+.+.|++|+||||++..++..+ ++.+..+..
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 47899999999999999999886 466665554
No 365
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.43 E-value=0.018 Score=57.98 Aligned_cols=95 Identities=20% Similarity=0.291 Sum_probs=61.5
Q ss_pred HHHHHHccCCeEEEEecCcccccccchhhhccCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhHHHHhcCcccC-----
Q 040638 269 RKVLIATENKSILVVEDIDCCTELQDRSAQARTASPYWHSPRRDLMLQIRNLILFVERILETFGLLNFTNGLWSS----- 343 (419)
Q Consensus 269 ~~l~~~~~~~sIlviddiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~Ll~~ldg~~s~----- 343 (419)
+..+..+...+|+++||||.+....+. . +. + ....-....||..+|+-...
T Consensus 242 ~~ai~~ae~~~il~~DEidki~~~~~~--~--------~~---D-----------~s~egvq~aLL~~le~~~~~~~~~~ 297 (444)
T 1g41_A 242 QKAIDAVEQNGIVFIDEIDKICKKGEY--S--------GA---D-----------VSREGVQRDLLPLVEGSTVSTKHGM 297 (444)
T ss_dssp HHHHHHHHHHCEEEEETGGGGSCCSSC--S--------SS---H-----------HHHHHHHHHHHHHHHCCEEEETTEE
T ss_pred HHHHHHhccCCeeeHHHHHHHhhccCC--C--------CC---C-----------chHHHHHHHHHHHhcccccccccce
Confidence 344455556789999999988652110 0 00 0 01122345688888874211
Q ss_pred -CCCCEEEEEec----CCCCCCCccccCCCCcceEEEeCCCCHHHHHHHHH
Q 040638 344 -SGDERIIVFTT----NHKDRLDPALLRPGRMDVHIHMSYCTLCGFKILAS 389 (419)
Q Consensus 344 -~g~~~iiV~tT----N~~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~ 389 (419)
....+++|+|. +.+..+-|.|+. ||+.+|+++.++.+++..|+.
T Consensus 298 ~d~~~ilfI~~gaf~~~~~~dlipel~~--R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 298 VKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp EECTTCEEEEEECCSSCCGGGSCHHHHT--TCCEEEECCCCCHHHHHHHHH
T ss_pred ecCCcEEEEeccccccCChhhcchHHhc--ccceeeeCCCCCHHHHHHHHH
Confidence 23457788876 234445578877 999999999999999999993
No 366
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.43 E-value=0.0062 Score=53.25 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.5
Q ss_pred cCceEEeCCCCCcHHHHHHHHHHH
Q 040638 226 KRGYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 226 ~rG~LL~GPpGtGKTsL~~aiA~~ 249 (419)
.+|+||.||+|+||||++.++...
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 468999999999999999999874
No 367
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.42 E-value=0.0052 Score=60.16 Aligned_cols=32 Identities=28% Similarity=0.324 Sum_probs=24.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC-CcEEEEEe
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH-FDVYDLEL 259 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~-~~v~~l~l 259 (419)
-+.|.||||+|||||+++|++.+. .....+..
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~ 249 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSN 249 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSSCCCCC----
T ss_pred EEEEECCCCccHHHHHHHHhccccccccCCccc
Confidence 388999999999999999999887 66555543
No 368
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.40 E-value=0.047 Score=48.46 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
++|.|++|+|||||+.++.+.
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999863
No 369
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.40 E-value=0.0059 Score=59.95 Aligned_cols=28 Identities=39% Similarity=0.590 Sum_probs=22.2
Q ss_pred ccccCc-eEEeCCCCCcHHHHHHHHHHHc
Q 040638 223 KAWKRG-YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 223 ~~~~rG-~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.++.| .+|+||+|+||||++.||+-.+
T Consensus 19 i~~~~g~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 19 IEFQSGITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 344445 6799999999999999998543
No 370
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.40 E-value=0.021 Score=55.56 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.|.||||+|||||+.++++.+
T Consensus 77 v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 77 VGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999865
No 371
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=95.39 E-value=0.038 Score=47.44 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 372
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.39 E-value=0.0078 Score=54.90 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=26.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-+.+.|++|||||++++.+|..+++++++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 47889999999999999999999999875
No 373
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.38 E-value=0.02 Score=49.91 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++|.|++|+|||||+.++.+.-
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 8999999999999999998754
No 374
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.38 E-value=0.0054 Score=61.37 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.|.||+|+|||||+++|++..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCCCCCHHHHHHHHhCcc
Confidence 6799999999999999999863
No 375
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.34 E-value=0.0075 Score=54.02 Aligned_cols=24 Identities=42% Similarity=0.577 Sum_probs=21.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
.+|+||+|+||||++.||.-.+..
T Consensus 26 ~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHhcC
Confidence 689999999999999999877754
No 376
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.32 E-value=0.018 Score=54.75 Aligned_cols=58 Identities=19% Similarity=0.190 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHhhchhhhhhcCccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 200 MKKMIMDDLERFLKRKDYYRRVGKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 200 ~k~~i~~~l~~~~~~~~~~~~~g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+.+.+.+.+...+.... ..+.+..++-+.+.||+|+||||+++.+|..+ +..+.-++.
T Consensus 74 ~~~~~~~~l~~~~~~~~--~~i~~~~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 74 ILATVYEALKEALGGEA--RLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp HHHHHHHHHHHHTTSSC--CCCCCCSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHHCCCC--ceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 33445555555543321 23333322337788999999999999999887 445554443
No 377
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.06 Score=46.93 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999864
No 378
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.30 E-value=0.017 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.491 Sum_probs=21.0
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.-+++.|++|+|||||+.++++.-
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 348999999999999999998753
No 379
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.29 E-value=0.0097 Score=53.82 Aligned_cols=29 Identities=34% Similarity=0.356 Sum_probs=24.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC---CcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH---FDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l 257 (419)
+.|.||+|+||||+++.++..+. +++...
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~ 40 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERGIEVQLT 40 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence 67889999999999999999884 555443
No 380
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.27 E-value=0.034 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999864
No 381
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.27 E-value=0.023 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+++.|++|+|||||+.++.+.-
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 24 VLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998654
No 382
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.26 E-value=0.0083 Score=51.18 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+.|.|+||+|||||++++++.
T Consensus 6 v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 6 IALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999873
No 383
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.23 E-value=0.03 Score=56.51 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=45.6
Q ss_pred HHHhHHHHhcCcccCCCCCEEEEEecCC-------------CCCCCccccCCCCcceEEEeCCCCHHHHHHHHHHhhCCC
Q 040638 329 ETFGLLNFTNGLWSSSGDERIIVFTTNH-------------KDRLDPALLRPGRMDVHIHMSYCTLCGFKILASNYLGIT 395 (419)
Q Consensus 329 ~ls~Ll~~ldg~~s~~g~~~iiV~tTN~-------------~~~LdpALlrpGR~d~~I~~~~~~~~~~~~l~~~~l~~~ 395 (419)
..+.|+..|... ... ++|++||. ++.|+|.++. ||.. +.++.++.++...+++..+..+
T Consensus 311 a~~aLlk~lEe~----~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~s--R~~~-~~~~~~~~~e~~~iL~~~~~~~ 382 (456)
T 2c9o_A 311 CFTYLHRALESS----IAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLD--RVMI-IRTMLYTPQEMKQIIKIRAQTE 382 (456)
T ss_dssp HHHHHHHHTTST----TCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHT--TEEE-EECCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcc----CCC-EEEEecCCccccccccccccccccCChhHHh--hcce-eeCCCCCHHHHHHHHHHHHHHh
Confidence 344566666644 223 55555543 7789999999 9966 6999999999999999876544
Q ss_pred CCCChHH
Q 040638 396 EHPLFSE 402 (419)
Q Consensus 396 ~~~l~~~ 402 (419)
...+.++
T Consensus 383 ~~~~~~~ 389 (456)
T 2c9o_A 383 GINISEE 389 (456)
T ss_dssp TCCBCHH
T ss_pred CCCCCHH
Confidence 4334343
No 384
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.20 E-value=0.015 Score=57.98 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.||||+|||||+++|++....
T Consensus 72 valvG~nGaGKSTLln~L~Gl~~p 95 (413)
T 1tq4_A 72 VAVTGETGSGKSSFINTLRGIGNE 95 (413)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCTT
T ss_pred EEEECCCCCcHHHHHHHHhCCCCc
Confidence 789999999999999999996643
No 385
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.16 E-value=0.0057 Score=67.26 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=35.8
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEec
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELS 260 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~ 260 (419)
.++.+.+..+.| +.|.||+|+|||||+++|++.+..+-+.+...
T Consensus 688 iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~ 733 (986)
T 2iw3_A 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH 733 (986)
T ss_dssp SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEEC
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEc
Confidence 345555666666 88999999999999999999998887777664
No 386
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.16 E-value=0.023 Score=57.47 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++|+||||+|||+|++.+++..
T Consensus 154 ~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 154 IGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCccHHHHHHHhhh
Confidence 8899999999999999998765
No 387
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.15 E-value=0.03 Score=56.19 Aligned_cols=60 Identities=15% Similarity=0.264 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHHhhchhhhhhcCc--cccCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEecc
Q 040638 200 MKKMIMDDLERFLKRKDYYRRVGK--AWKRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLELSS 261 (419)
Q Consensus 200 ~k~~i~~~l~~~~~~~~~~~~~g~--~~~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l~~ 261 (419)
+++.+.+.+...+.... ..+.. ..++.+++.|++|+||||++..+|..+ +..+.-+++..
T Consensus 74 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 74 FVKIVRNELVAAMGEEN--QTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp THHHHHHHHHHHHCSSS--CCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred HHHHHHHHHHHHhcccc--ccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 44555555555554321 11111 234558889999999999999999776 66676666653
No 388
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.14 E-value=0.0069 Score=57.51 Aligned_cols=35 Identities=14% Similarity=0.258 Sum_probs=24.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC---CcEEEEEecccC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH---FDVYDLELSSVE 263 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~l~~~~ 263 (419)
+.|.||+|+||||+++.++..++ ..+..+++..+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 78999999999999999998776 445555555543
No 389
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.12 E-value=0.0045 Score=54.89 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=21.7
Q ss_pred cccCc--eEEeCCCCCcHHHHHHHHHHHc
Q 040638 224 AWKRG--YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+..+| +.|.||||+|||||++++++..
T Consensus 22 ~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 22 PSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34445 8899999999999999998654
No 390
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.11 E-value=0.04 Score=48.52 Aligned_cols=21 Identities=19% Similarity=0.385 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+..+.+.
T Consensus 32 i~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 32 LVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhhC
Confidence 899999999999999999753
No 391
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.11 E-value=0.011 Score=60.74 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=25.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC---CcEEEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH---FDVYDLE 258 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~---~~v~~l~ 258 (419)
-++|.|+||+||||+++.+|..++ .+...++
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 488999999999999999999884 4444444
No 392
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=95.11 E-value=0.011 Score=60.04 Aligned_cols=29 Identities=31% Similarity=0.253 Sum_probs=24.5
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
.-+.|.||+|+|||||+++|++.+..+-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 34789999999999999999999866533
No 393
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.09 E-value=0.012 Score=49.39 Aligned_cols=21 Identities=29% Similarity=0.414 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++++.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEECCTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999864
No 394
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.07 E-value=0.039 Score=54.42 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=23.3
Q ss_pred cccCc--eEEeCCCCCcHHHHHHHHHHHc
Q 040638 224 AWKRG--YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+..+| +++.||||||||+|++.||+.+
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 44555 8999999999999999999876
No 395
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.06 E-value=0.016 Score=52.90 Aligned_cols=29 Identities=21% Similarity=0.158 Sum_probs=21.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc-------CCcEEEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL-------HFDVYDL 257 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l-------~~~v~~l 257 (419)
+.|.||+|+||||+++.++..+ ++++...
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~ 63 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVT 63 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhccccceeeeee
Confidence 6788999999999999999988 5566543
No 396
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.04 E-value=0.012 Score=49.54 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 397
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.02 E-value=0.0098 Score=58.98 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=25.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
-+++.||+|+|||+|+..+|..++..++.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis 32 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVIN 32 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEE
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEee
Confidence 47889999999999999999998866543
No 398
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.01 E-value=0.0089 Score=51.98 Aligned_cols=21 Identities=24% Similarity=0.610 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
++|.|+||+|||||++.+++.
T Consensus 5 v~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEESCTTSSHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999873
No 399
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.99 E-value=0.0075 Score=62.34 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=25.6
Q ss_pred ccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 225 WKRG--YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 225 ~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
.++| +.|.||+|+|||||+++|++.+..+-+
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3455 889999999999999999998865533
No 400
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.98 E-value=0.0093 Score=58.43 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=24.8
Q ss_pred hhhcCccccCc-eEEeCCCCCcHHHHHHHHHHH
Q 040638 218 YRRVGKAWKRG-YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 218 ~~~~g~~~~rG-~LL~GPpGtGKTsL~~aiA~~ 249 (419)
|..+.+....| +.|+||+|+|||+++.||+..
T Consensus 17 ~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 17 LAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp CCSEEEECCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeeeEEEEcCCeEEEECCCCCChhHHHHHHHHh
Confidence 34444555556 679999999999999999863
No 401
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.012 Score=61.72 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=23.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+.|.||+|+|||||+++|++.+..+.+
T Consensus 106 ~~LvGpNGaGKSTLLkiL~Gll~P~~G 132 (608)
T 3j16_B 106 LGLVGTNGIGKSTALKILAGKQKPNLG 132 (608)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSCCCTT
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCc
Confidence 889999999999999999998865543
No 402
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.95 E-value=0.01 Score=61.34 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=24.1
Q ss_pred cCc--eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 226 KRG--YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 226 ~rG--~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
++| +.|.||+|+|||||+++|++.+..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~ 339 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 339 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 455 7899999999999999999987543
No 403
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.93 E-value=0.0079 Score=57.40 Aligned_cols=30 Identities=27% Similarity=0.466 Sum_probs=23.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+.|.||||+|||||+++|+ .+......+..
T Consensus 168 ~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred EEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 7899999999999999999 77665554443
No 404
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.93 E-value=0.036 Score=48.63 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999753
No 405
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.93 E-value=0.039 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=18.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999743
No 406
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.92 E-value=0.0093 Score=62.55 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=27.5
Q ss_pred hhcCccccCc-------eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 219 RRVGKAWKRG-------YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 219 ~~~g~~~~rG-------~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
..+.+....| +.|.||+|+|||||+++|++.+..+
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~ 405 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD 405 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC
Confidence 3344555556 7899999999999999999988543
No 407
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.92 E-value=0.013 Score=52.18 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-++|.|++|+|||||+.++++..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999999754
No 408
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.91 E-value=0.013 Score=50.80 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=19.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
++|.|++|+|||||++++++.
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 889999999999999999873
No 409
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.91 E-value=0.022 Score=51.68 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=24.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEE
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVY 255 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~ 255 (419)
+.+.||+|+||||+++.++..++.++.
T Consensus 8 i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 8 ILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccce
Confidence 778899999999999999999987543
No 410
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.91 E-value=0.015 Score=55.72 Aligned_cols=38 Identities=18% Similarity=0.087 Sum_probs=27.0
Q ss_pred CccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 222 GKAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 222 g~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
|+....-++|.|+||+|||+|+..+|... +.++..+++
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 34444449999999999999999998654 345554443
No 411
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.91 E-value=0.014 Score=53.08 Aligned_cols=30 Identities=23% Similarity=0.489 Sum_probs=24.1
Q ss_pred cCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEE
Q 040638 226 KRG--YLLFGPLGTGKSSLIAAMANYLHFDVYD 256 (419)
Q Consensus 226 ~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~ 256 (419)
++| +.|.||+|+||||+++.+++. +..+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~~ 49 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDICL 49 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCeEE
Confidence 445 778999999999999999998 544443
No 412
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.90 E-value=0.0042 Score=61.66 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=28.2
Q ss_pred hhhhcCccccCc-eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 217 YYRRVGKAWKRG-YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 217 ~~~~~g~~~~rG-~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
.|..+.+.+..| +.|+||+|+|||||+++|+..++
T Consensus 50 ~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555666666 67999999999999999988876
No 413
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=94.88 E-value=0.0074 Score=66.37 Aligned_cols=32 Identities=41% Similarity=0.627 Sum_probs=26.3
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHH
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~ 248 (419)
.++.+.+..++| +.|.||+|+|||||+++|++
T Consensus 450 iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 445556666677 89999999999999999994
No 414
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.87 E-value=0.011 Score=61.98 Aligned_cols=29 Identities=24% Similarity=0.464 Sum_probs=24.5
Q ss_pred ccCc--eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 225 WKRG--YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 225 ~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
..+| +.|.||+|+|||||+++|++.+..+
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~ 409 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT 409 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3456 7899999999999999999987543
No 415
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.84 E-value=0.013 Score=49.90 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|+||+|||||+.++.+.
T Consensus 7 i~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 7 VVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCccHHHHHHHHhcC
Confidence 899999999999999999753
No 416
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.84 E-value=0.0038 Score=59.86 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
+.|.||||+|||||+++|++.+......+..
T Consensus 176 ~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~ 206 (307)
T 1t9h_A 176 TVFAGQSGVGKSSLLNAISPELGLRTNEISE 206 (307)
T ss_dssp EEEEESHHHHHHHHHHHHCC-----------
T ss_pred EEEECCCCCCHHHHHHHhcccccccccceee
Confidence 8899999999999999999988776665543
No 417
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.83 E-value=0.011 Score=61.99 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=25.3
Q ss_pred cccCc--eEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 224 AWKRG--YLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
....| +.|.||+|+|||||+++|++.+..+
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~ 144 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN 144 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCC
Confidence 34556 8899999999999999999988654
No 418
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.80 E-value=0.034 Score=53.89 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.+.||||+||||++.++++.+
T Consensus 59 i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 59 LGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999876
No 419
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.79 E-value=0.028 Score=48.63 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++++.
T Consensus 19 i~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 19 ILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEESTTSSHHHHHHHHCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 420
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.78 E-value=0.015 Score=49.53 Aligned_cols=22 Identities=36% Similarity=0.508 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999854
No 421
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.78 E-value=0.013 Score=61.61 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999988887665
No 422
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.74 E-value=0.016 Score=48.96 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 423
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.74 E-value=0.0081 Score=55.82 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=21.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.|++|+||||+++.++..++
T Consensus 27 I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 27 ISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 78899999999999999999984
No 424
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.71 E-value=0.015 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.586 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 889999999999999999853
No 425
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.70 E-value=0.011 Score=52.18 Aligned_cols=20 Identities=20% Similarity=0.497 Sum_probs=18.7
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|+||+|||||++++++
T Consensus 28 i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 28 LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEETTSSHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 426
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.70 E-value=0.016 Score=62.83 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=19.6
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 37899999999999988887665
No 427
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.67 E-value=0.017 Score=49.33 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 428
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.66 E-value=0.019 Score=59.75 Aligned_cols=31 Identities=26% Similarity=0.236 Sum_probs=27.1
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC----CcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH----FDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~----~~v~~l~l 259 (419)
++|.|+||+||||++++++..|+ .+++.++.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred EEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 78999999999999999999986 67777764
No 429
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.66 E-value=0.015 Score=50.81 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|+||+|||||++++++
T Consensus 26 i~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 26 LLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999987
No 430
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.63 E-value=0.016 Score=49.08 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=18.5
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|+||+|||||+.++.+
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999974
No 431
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.039 Score=47.96 Aligned_cols=20 Identities=40% Similarity=0.677 Sum_probs=19.1
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|++|+|||||+.++.+
T Consensus 11 i~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 11 VVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHc
Confidence 89999999999999999986
No 432
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.62 E-value=0.029 Score=54.68 Aligned_cols=31 Identities=32% Similarity=0.304 Sum_probs=24.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+.|.|+||+||||++.+++..+ +..+..++.
T Consensus 82 I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 82 VGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 8899999999999999999876 555544443
No 433
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.62 E-value=0.015 Score=50.15 Aligned_cols=21 Identities=38% Similarity=0.517 Sum_probs=19.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+.|.|+||+|||||+.++++.
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999975
No 434
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.62 E-value=0.015 Score=59.93 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=23.1
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+....-++|.||||+|||||++++|+.+
T Consensus 278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3333348999999999999999999876
No 435
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.61 E-value=0.013 Score=56.65 Aligned_cols=27 Identities=44% Similarity=0.666 Sum_probs=21.3
Q ss_pred cccCc-eEEeCCCCCcHHHHHHHHHHHc
Q 040638 224 AWKRG-YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 224 ~~~rG-~LL~GPpGtGKTsL~~aiA~~l 250 (419)
.+..| .+|+||+|+|||+++.||+-.+
T Consensus 20 ~f~~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 20 EFKEGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp ECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 33445 6899999999999999996544
No 436
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.58 E-value=0.018 Score=49.12 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 899999999999999999853
No 437
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.56 E-value=0.017 Score=52.76 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=21.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.+.|++|+||||+++.++..++
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999994
No 438
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.56 E-value=0.02 Score=57.80 Aligned_cols=37 Identities=14% Similarity=0.100 Sum_probs=27.0
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEe
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLEL 259 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l 259 (419)
+....-++|.||||+|||+|+..+|..+ +.++..+++
T Consensus 200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 3333338999999999999999998754 445665554
No 439
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.54 E-value=0.011 Score=61.13 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=21.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+||||||++++||+.++
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHhhc
Confidence 78999999999999999999986
No 440
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.51 E-value=0.042 Score=48.63 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999864
No 441
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.47 E-value=0.027 Score=50.80 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFDVYDLEL 259 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l 259 (419)
.+-|.|..||||||+++.++. +|+++++.+.
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ 41 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDL 41 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcH
Confidence 478999999999999999998 9999987654
No 442
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.47 E-value=0.021 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~ 248 (419)
-+++.|++|+|||||+.++.+
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999975
No 443
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.43 E-value=0.02 Score=49.66 Aligned_cols=21 Identities=29% Similarity=0.477 Sum_probs=19.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 10 TVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999875
No 444
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.41 E-value=0.02 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=19.4
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~ 248 (419)
-+++.|++|+|||||+.++.+
T Consensus 10 ~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 10 VVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp EEEEESCTTTTHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 389999999999999999976
No 445
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.41 E-value=0.019 Score=48.91 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999853
No 446
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.33 E-value=0.017 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+||||+++.++..++
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 77889999999999999998873
No 447
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.31 E-value=0.012 Score=59.61 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=22.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-++|.|.||+||||+++.+|..++
T Consensus 41 ~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 41 LIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999999875
No 448
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.26 E-value=0.016 Score=49.47 Aligned_cols=20 Identities=45% Similarity=0.727 Sum_probs=18.7
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
+++.|++|+|||||+.++.+
T Consensus 12 i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCS
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 89999999999999999975
No 449
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.24 E-value=0.021 Score=48.66 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999875
No 450
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.21 E-value=0.019 Score=53.61 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=20.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+.|.|+||+|||||+.++.+.
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4889999999999999999875
No 451
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.20 E-value=0.019 Score=49.95 Aligned_cols=22 Identities=36% Similarity=0.425 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999864
No 452
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.20 E-value=0.022 Score=49.03 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 453
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.17 E-value=0.022 Score=59.73 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.4
Q ss_pred CceEEeCCCCCcHHHHHHHHHHHc
Q 040638 227 RGYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 227 rG~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+-+++.||||||||++++++...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 348999999999999998887665
No 454
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.16 E-value=0.026 Score=49.01 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 455
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.16 E-value=0.026 Score=48.19 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 456
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.16 E-value=0.023 Score=49.19 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++++.
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 457
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=94.15 E-value=0.066 Score=48.29 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=18.5
Q ss_pred eEEeCCCCCcHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~ 248 (419)
++|.|.+|+|||+|+..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 89999999999999998874
No 458
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.14 E-value=0.019 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999864
No 459
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.14 E-value=0.015 Score=55.50 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=18.8
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+.|.||+|+|||||+++|++.
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999875
No 460
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.06 E-value=0.03 Score=55.95 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcCCc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLHFD 253 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~~~ 253 (419)
-++|+||+|+|||+++.||+..++..
T Consensus 28 ~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 28 FTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred EEEEECCCCCCHHHHHHHHHhhhccc
Confidence 37899999999999999999988654
No 461
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.04 E-value=0.028 Score=48.18 Aligned_cols=21 Identities=19% Similarity=0.370 Sum_probs=19.2
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 8 i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 8 CVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999853
No 462
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=94.03 E-value=0.019 Score=65.35 Aligned_cols=45 Identities=20% Similarity=0.194 Sum_probs=37.1
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEecc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSS 261 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~ 261 (419)
.++.+.+..+.| +.|.||+|+|||||++++++.+..+-+.+.+..
T Consensus 405 vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g 451 (1284)
T 3g5u_A 405 ILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451 (1284)
T ss_dssp SEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETT
T ss_pred ceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC
Confidence 456666666667 889999999999999999999988877776654
No 463
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.01 E-value=0.025 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.5
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-++|.|++|+|||||+.++.+.-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 38999999999999999998743
No 464
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.00 E-value=0.018 Score=55.36 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=22.7
Q ss_pred ccccCc-eEEeCCCCCcHHHHHHHHHHHc
Q 040638 223 KAWKRG-YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 223 ~~~~rG-~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+....| .+|+||+|+|||+|+.||.-.+
T Consensus 20 l~~~~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 20 IGFSDRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp EECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred EecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence 344445 6899999999999999999665
No 465
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.97 E-value=0.045 Score=53.05 Aligned_cols=37 Identities=19% Similarity=0.027 Sum_probs=27.3
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
+....-++|.|+||+|||+|+..+|..+ +.++..+++
T Consensus 43 l~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 43 FNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp BCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3333338999999999999999998764 556655554
No 466
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.96 E-value=0.028 Score=56.50 Aligned_cols=37 Identities=14% Similarity=0.015 Sum_probs=26.7
Q ss_pred ccccCceEEeCCCCCcHHHHHHHHHHHc----CCcEEEEEe
Q 040638 223 KAWKRGYLLFGPLGTGKSSLIAAMANYL----HFDVYDLEL 259 (419)
Q Consensus 223 ~~~~rG~LL~GPpGtGKTsL~~aiA~~l----~~~v~~l~l 259 (419)
+....-++|.||||+|||+|+..+|... +.++..+++
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 3333338999999999999999888654 445655544
No 467
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.94 E-value=0.026 Score=50.35 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=21.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHcC
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
-+++.|++|+|||||+..+++.+.
T Consensus 32 ~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 32 AVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhc
Confidence 488999999999999999998864
No 468
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.93 E-value=0.031 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999864
No 469
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=93.92 E-value=0.14 Score=51.97 Aligned_cols=34 Identities=32% Similarity=0.429 Sum_probs=28.3
Q ss_pred cccCc--eEEeCCCCCcHHHH-HHHHHHHcCCcEEEE
Q 040638 224 AWKRG--YLLFGPLGTGKSSL-IAAMANYLHFDVYDL 257 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL-~~aiA~~l~~~v~~l 257 (419)
+..+| .++.|++|||||+| +..|++..+.+++.+
T Consensus 158 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V 194 (502)
T 2qe7_A 158 PIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICI 194 (502)
T ss_dssp CCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEE
T ss_pred ccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEE
Confidence 45566 89999999999999 679999998886543
No 470
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.91 E-value=0.024 Score=49.03 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999865
No 471
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=93.89 E-value=0.031 Score=48.55 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 25 i~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999863
No 472
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.89 E-value=0.031 Score=48.48 Aligned_cols=21 Identities=19% Similarity=0.301 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 23 i~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 23 IIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999753
No 473
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.89 E-value=0.031 Score=48.59 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=19.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
++|.|++|+|||||+..+.+.
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999888764
No 474
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=93.88 E-value=0.032 Score=48.57 Aligned_cols=21 Identities=33% Similarity=0.721 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 475
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.87 E-value=0.036 Score=58.09 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.9
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+|||||+++|++.+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~ 70 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVAL 70 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC-
T ss_pred EEEECCCCChHHHHHHHHhCCCC
Confidence 88999999999999999999763
No 476
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.87 E-value=0.031 Score=48.60 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=19.3
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+..+.+.
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHHhC
Confidence 899999999999999998864
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.86 E-value=0.032 Score=63.59 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=37.4
Q ss_pred hhhhcCccccCc--eEEeCCCCCcHHHHHHHHHHHcCCcEEEEEeccc
Q 040638 217 YYRRVGKAWKRG--YLLFGPLGTGKSSLIAAMANYLHFDVYDLELSSV 262 (419)
Q Consensus 217 ~~~~~g~~~~rG--~LL~GPpGtGKTsL~~aiA~~l~~~v~~l~l~~~ 262 (419)
.++.+.+..++| +.|.||+|+|||||++++++.+..+-+.+.+...
T Consensus 1048 ~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~ 1095 (1284)
T 3g5u_A 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGK 1095 (1284)
T ss_dssp SBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSS
T ss_pred eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCE
Confidence 345555566666 8899999999999999999999988888877654
No 478
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.86 E-value=0.031 Score=49.03 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-+++.|++|+|||||+.++.+.-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998653
No 479
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.84 E-value=0.028 Score=49.04 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999864
No 480
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.84 E-value=0.032 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.354 Sum_probs=21.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.|++|+||||+++.++..++.
T Consensus 24 i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 24 ITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 678899999999999999998755
No 481
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.78 E-value=0.024 Score=48.43 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+..+++.
T Consensus 10 i~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 10 LGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEECCGGGCHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 899999999999999999864
No 482
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.77 E-value=0.033 Score=49.10 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999999853
No 483
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.77 E-value=0.03 Score=50.61 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=20.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.|.|++|+||||+++.++..+
T Consensus 6 i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 6 IVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6788999999999999999988
No 484
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.76 E-value=0.03 Score=57.33 Aligned_cols=24 Identities=17% Similarity=0.127 Sum_probs=22.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcCC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLHF 252 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~~ 252 (419)
+.|.|++||||||+++++|..|+.
T Consensus 398 I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 398 IVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEECTTCCSCHHHHHHHHHHHHTT
T ss_pred EEecccCCCCHHHHHHHHHHHHHH
Confidence 788999999999999999999985
No 485
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=93.76 E-value=0.034 Score=48.45 Aligned_cols=21 Identities=24% Similarity=0.381 Sum_probs=19.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+.++.+.
T Consensus 26 i~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 26 IVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 486
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=93.75 E-value=0.24 Score=48.04 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~ 248 (419)
-+.+.|++|+|||||+.++.+
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 488999999999999999998
No 487
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.74 E-value=0.031 Score=47.94 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=19.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~ 248 (419)
-+++.|++|+|||||+.++.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 389999999999999999984
No 488
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.73 E-value=0.027 Score=48.61 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=19.7
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 20 ~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 20 RLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999853
No 489
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=93.67 E-value=0.12 Score=52.62 Aligned_cols=49 Identities=20% Similarity=0.251 Sum_probs=33.2
Q ss_pred cccCc--eEEeCCCCCcHHHH-HHHHHHHcCCcEEEEEecccCChHHHHHHH
Q 040638 224 AWKRG--YLLFGPLGTGKSSL-IAAMANYLHFDVYDLELSSVEGNKHLRKVL 272 (419)
Q Consensus 224 ~~~rG--~LL~GPpGtGKTsL-~~aiA~~l~~~v~~l~l~~~~~~~~l~~l~ 272 (419)
+..+| .++.|++|||||+| +..|++..+.+++.+-+.--+..+++.++.
T Consensus 159 PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~ 210 (507)
T 1fx0_A 159 PVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVV 210 (507)
T ss_dssp CCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHH
T ss_pred ccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHH
Confidence 44566 89999999999999 679999988775544332222334444443
No 490
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.65 E-value=0.032 Score=49.15 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-++|.|++|+|||||+.++.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999863
No 491
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.64 E-value=0.032 Score=49.04 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=20.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
++|.|++|+|||||+.++.+.-
T Consensus 27 i~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 27 VVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 8999999999999999998743
No 492
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.64 E-value=0.061 Score=49.34 Aligned_cols=31 Identities=29% Similarity=0.637 Sum_probs=25.0
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc--CCcEEEEEe
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL--HFDVYDLEL 259 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l--~~~v~~l~l 259 (419)
+++.|++|+||||++..+|..+ +..+.-+++
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 7788999999999999999776 555555543
No 493
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.63 E-value=0.032 Score=60.44 Aligned_cols=23 Identities=39% Similarity=0.466 Sum_probs=19.0
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l 250 (419)
-+++.||||||||+++..++..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999888776544
No 494
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.59 E-value=0.063 Score=52.55 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=19.4
Q ss_pred eEEeCCCCCcHHHHHHHHHHHc
Q 040638 229 YLLFGPLGTGKSSLIAAMANYL 250 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l 250 (419)
+.|.|+||+|||||++++++..
T Consensus 182 V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 182 IGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 7799999999999999998753
No 495
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.56 E-value=0.024 Score=55.60 Aligned_cols=26 Identities=31% Similarity=0.525 Sum_probs=21.6
Q ss_pred ccccCc-eEEeCCCCCcHHHHHHHHHH
Q 040638 223 KAWKRG-YLLFGPLGTGKSSLIAAMAN 248 (419)
Q Consensus 223 ~~~~rG-~LL~GPpGtGKTsL~~aiA~ 248 (419)
+.+..| .+|+||+|+|||+++.||.-
T Consensus 21 i~f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 21 IKFEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred EecCCCeEEEECCCCCCHHHHHHHHHH
Confidence 344456 68999999999999999985
No 496
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.51 E-value=0.028 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.6
Q ss_pred eEEeCCCCCcHHHHHHHHHHHcC
Q 040638 229 YLLFGPLGTGKSSLIAAMANYLH 251 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~l~ 251 (419)
+.|.||+|+|||||++++++...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCC
Confidence 58999999999999999998653
No 497
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.42 E-value=0.036 Score=49.21 Aligned_cols=21 Identities=24% Similarity=0.411 Sum_probs=19.7
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+++.|++|+|||||+..+++.
T Consensus 31 i~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 31 IVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 899999999999999999874
No 498
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.39 E-value=0.055 Score=54.46 Aligned_cols=32 Identities=19% Similarity=0.046 Sum_probs=25.2
Q ss_pred ceEEeCCCCCcHHHHHHHHHHHc---CCcEEEEEe
Q 040638 228 GYLLFGPLGTGKSSLIAAMANYL---HFDVYDLEL 259 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~l---~~~v~~l~l 259 (419)
-+++.|+||+|||+++-.+|... +.++..+++
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 38999999999999999888655 556665544
No 499
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.38 E-value=0.024 Score=48.71 Aligned_cols=22 Identities=27% Similarity=0.489 Sum_probs=9.1
Q ss_pred ceEEeCCCCCcHHHHHHHHHHH
Q 040638 228 GYLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 228 G~LL~GPpGtGKTsL~~aiA~~ 249 (419)
-+++.|++|+|||||+.++.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3899999999999999998753
No 500
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.37 E-value=0.035 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.5
Q ss_pred eEEeCCCCCcHHHHHHHHHHH
Q 040638 229 YLLFGPLGTGKSSLIAAMANY 249 (419)
Q Consensus 229 ~LL~GPpGtGKTsL~~aiA~~ 249 (419)
+.|.|+||+|||||+.++++.
T Consensus 6 I~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 6 IALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEECCTTSSHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHCC
Confidence 789999999999999999874
Done!