Query 040640
Match_columns 195
No_of_seqs 208 out of 1083
Neff 8.9
Searched_HMMs 46136
Date Fri Mar 29 10:21:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040640.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040640hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02216 protein SRG1 100.0 1.9E-57 4.2E-62 378.3 17.3 192 1-193 86-288 (357)
2 PLN02758 oxidoreductase, 2OG-F 100.0 1.9E-56 4E-61 372.9 16.9 192 1-193 88-290 (361)
3 PLN02254 gibberellin 3-beta-di 100.0 3.3E-56 7.2E-61 370.6 17.2 190 1-193 83-288 (358)
4 PLN00417 oxidoreductase, 2OG-F 100.0 1.4E-55 3E-60 366.1 17.8 192 1-193 79-281 (348)
5 PLN02515 naringenin,2-oxogluta 100.0 3E-55 6.5E-60 364.9 17.5 191 1-193 72-274 (358)
6 PLN02276 gibberellin 20-oxidas 100.0 3.1E-55 6.8E-60 365.7 17.5 191 1-193 76-283 (361)
7 PLN03178 leucoanthocyanidin di 100.0 8.3E-55 1.8E-59 363.3 17.5 191 1-193 83-288 (360)
8 PLN02997 flavonol synthase 100.0 1.4E-54 3E-59 357.0 17.8 187 1-193 62-260 (325)
9 PLN02393 leucoanthocyanidin di 100.0 1.4E-54 3E-59 362.0 17.0 192 1-193 87-291 (362)
10 KOG0143 Iron/ascorbate family 100.0 2.5E-54 5.4E-59 354.3 17.4 192 1-193 52-255 (322)
11 PLN02704 flavonol synthase 100.0 3.6E-54 7.8E-59 356.5 17.4 191 1-193 72-276 (335)
12 PLN02912 oxidoreductase, 2OG-F 100.0 4.2E-54 9.2E-59 357.2 17.2 189 1-193 74-274 (348)
13 PLN02485 oxidoreductase 100.0 6.8E-54 1.5E-58 354.4 17.9 192 1-193 50-267 (329)
14 PLN02947 oxidoreductase 100.0 2.7E-54 5.9E-59 360.7 15.6 190 1-193 99-302 (374)
15 COG3491 PcbC Isopenicillin N s 100.0 5.2E-54 1.1E-58 340.5 16.1 190 1-193 41-252 (322)
16 PTZ00273 oxidase reductase; Pr 100.0 1E-53 2.2E-58 352.3 18.1 191 1-193 41-256 (320)
17 PLN02750 oxidoreductase, 2OG-F 100.0 9.5E-54 2.1E-58 355.2 17.8 189 1-193 59-272 (345)
18 PLN03002 oxidoreductase, 2OG-F 100.0 1.2E-53 2.6E-58 352.8 18.3 190 1-193 44-265 (332)
19 PLN02639 oxidoreductase, 2OG-F 100.0 1.4E-53 3E-58 353.3 17.4 190 1-193 67-268 (337)
20 PLN02299 1-aminocyclopropane-1 100.0 4.1E-53 8.8E-58 347.9 15.9 185 1-193 39-236 (321)
21 PLN02904 oxidoreductase 100.0 8.6E-53 1.9E-57 350.3 17.0 189 1-193 85-285 (357)
22 PLN02156 gibberellin 2-beta-di 100.0 5.1E-52 1.1E-56 342.6 17.3 188 1-193 53-258 (335)
23 PLN02984 oxidoreductase, 2OG-F 100.0 6.2E-52 1.3E-56 342.8 16.4 189 1-193 64-277 (341)
24 PLN03001 oxidoreductase, 2OG-F 100.0 1.7E-51 3.7E-56 329.2 15.7 177 15-193 2-193 (262)
25 PLN02365 2-oxoglutarate-depend 100.0 1E-50 2.3E-55 331.3 17.5 185 1-193 33-229 (300)
26 PLN02403 aminocyclopropanecarb 100.0 7.4E-51 1.6E-55 331.7 16.5 184 1-193 35-232 (303)
27 PF03171 2OG-FeII_Oxy: 2OG-Fe( 99.8 1.2E-18 2.7E-23 119.8 5.4 71 119-193 6-78 (98)
28 PF14226 DIOX_N: non-haem diox 99.6 1.8E-16 3.8E-21 112.2 3.5 77 1-79 32-116 (116)
29 PLN03176 flavanone-3-hydroxyla 98.9 9E-10 2E-14 78.3 3.7 45 1-46 72-116 (120)
30 smart00702 P4Hc Prolyl 4-hydro 86.7 3.9 8.5E-05 30.5 7.1 75 97-177 60-152 (178)
31 TIGR00568 alkb DNA alkylation 81.8 6.7 0.00015 29.5 6.4 69 106-180 84-162 (169)
32 PRK15401 alpha-ketoglutarate-d 79.9 12 0.00027 29.2 7.4 63 119-188 120-190 (213)
33 PF13532 2OG-FeII_Oxy_2: 2OG-F 77.4 6.5 0.00014 29.6 5.2 61 119-188 101-171 (194)
34 PF13640 2OG-FeII_Oxy_3: 2OG-F 68.1 8 0.00017 25.7 3.4 46 133-178 11-76 (100)
35 PLN00052 prolyl 4-hydroxylase; 51.2 82 0.0018 26.1 7.1 75 96-176 111-218 (310)
36 PF06820 Phage_fiber_C: Putati 47.8 15 0.00032 22.4 1.7 37 131-167 15-61 (64)
37 COG2140 Thermophilic glucose-6 45.0 65 0.0014 25.1 5.2 55 119-179 95-151 (209)
38 PF11043 DUF2856: Protein of u 43.9 25 0.00054 22.9 2.3 24 8-32 20-43 (97)
39 PRK05467 Fe(II)-dependent oxyg 41.8 1.4E+02 0.0029 23.6 6.7 29 152-181 129-158 (226)
40 PF01361 Tautomerase: Tautomer 38.6 50 0.0011 19.6 3.1 25 92-116 14-38 (60)
41 PRK01964 4-oxalocrotonate taut 36.1 57 0.0012 19.7 3.1 33 92-124 15-48 (64)
42 PF11876 DUF3396: Protein of u 34.5 13 0.00028 28.9 -0.0 43 138-180 105-152 (208)
43 smart00153 VHP Villin headpiec 34.5 24 0.00053 19.2 1.1 25 6-30 2-26 (36)
44 PF12368 DUF3650: Protein of u 34.4 29 0.00062 17.9 1.2 16 1-16 11-26 (28)
45 PRK02220 4-oxalocrotonate taut 34.1 65 0.0014 19.1 3.1 25 92-116 15-39 (61)
46 smart00460 TGc Transglutaminas 33.1 43 0.00094 20.1 2.3 16 155-170 53-68 (68)
47 PRK02289 4-oxalocrotonate taut 33.0 58 0.0013 19.5 2.8 24 92-115 15-38 (60)
48 PF06560 GPI: Glucose-6-phosph 32.9 57 0.0012 24.8 3.2 36 143-180 94-136 (182)
49 cd00491 4Oxalocrotonate_Tautom 32.3 66 0.0014 18.7 2.9 25 92-116 14-38 (58)
50 PRK00745 4-oxalocrotonate taut 31.9 78 0.0017 18.8 3.3 25 92-116 15-39 (62)
51 TIGR00013 taut 4-oxalocrotonat 31.4 70 0.0015 19.0 3.0 24 92-115 15-38 (63)
52 PF11548 Receptor_IA-2: Protei 30.3 43 0.00093 22.5 1.9 22 97-118 18-39 (91)
53 TIGR01565 homeo_ZF_HD homeobox 29.0 53 0.0012 20.0 2.0 33 84-116 13-49 (58)
54 PF12851 Tet_JBP: Oxygenase do 28.8 2.5E+02 0.0054 21.0 8.4 50 132-181 85-145 (171)
55 COG1305 Transglutaminase-like 28.3 1.1E+02 0.0023 24.4 4.4 74 85-172 188-262 (319)
56 PRK15331 chaperone protein Sic 26.6 57 0.0012 24.5 2.2 21 4-25 30-50 (165)
57 PF01381 HTH_3: Helix-turn-hel 26.0 19 0.00041 20.9 -0.4 30 87-116 26-55 (55)
58 PF14549 P22_Cro: DNA-binding 25.9 40 0.00087 20.7 1.1 12 180-191 40-51 (60)
59 PTZ00397 macrophage migration 25.5 85 0.0018 21.6 2.9 24 92-115 72-95 (116)
60 PF01257 2Fe-2S_thioredx: Thio 24.4 60 0.0013 23.5 2.0 43 76-118 8-50 (145)
61 PF08921 DUF1904: Domain of un 24.3 1.1E+02 0.0024 21.2 3.2 26 92-117 12-37 (108)
62 PF00046 Homeobox: Homeobox do 24.1 58 0.0013 19.0 1.6 34 82-115 10-43 (57)
63 PF08699 DUF1785: Domain of un 23.4 87 0.0019 18.4 2.2 24 153-177 19-42 (52)
64 PRK01271 4-oxalocrotonate taut 22.5 1.1E+02 0.0023 19.7 2.7 25 92-116 16-40 (76)
65 PF08239 SH3_3: Bacterial SH3 22.1 95 0.0021 17.8 2.3 38 131-171 4-44 (55)
66 PF12791 RsgI_N: Anti-sigma fa 21.9 70 0.0015 18.8 1.6 23 160-185 14-36 (56)
67 PF01187 MIF: Macrophage migra 21.4 1.2E+02 0.0027 20.8 3.0 24 92-115 70-93 (114)
68 PF08066 PMC2NT: PMC2NT (NUC01 21.4 1.4E+02 0.0031 19.6 3.3 27 81-107 24-50 (91)
69 PRK15336 type III secretion sy 21.1 92 0.002 22.5 2.4 25 79-103 111-135 (135)
70 COG1741 Pirin-related protein 20.9 1.4E+02 0.0031 24.3 3.7 19 130-148 55-73 (276)
71 PF13443 HTH_26: Cro/C1-type H 20.5 93 0.002 18.4 2.1 32 85-116 25-57 (63)
72 PF02826 2-Hacid_dh_C: D-isome 20.4 1.3E+02 0.0028 22.4 3.2 24 169-192 118-149 (178)
73 TIGR02466 conserved hypothetic 20.2 4.1E+02 0.0089 20.5 7.6 20 162-181 160-179 (201)
No 1
>PLN02216 protein SRG1
Probab=100.00 E-value=1.9e-57 Score=378.31 Aligned_cols=192 Identities=58% Similarity=1.036 Sum_probs=174.8
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.+++++++++++ +||+||.|+|+++....+..+||+........+..||+|.|.+...|.....+|.||+.+
T Consensus 86 v~nHGI~~~li~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~p 164 (357)
T PLN02216 86 LVNHGIDSSFLDKVKSEIQ-DFFNLPMEEKKKLWQRPGEIEGFGQAFVVSEDQKLDWADMFFLTMQPVRLRKPHLFPKLP 164 (357)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhhcCCCCccccCccccccccccCCceeeeeeeccCcccccchhcccch
Confidence 6899999999999999999 999999999999977555678997655444456689999998876665556789999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-----------CcCCCCCCCCCcccccccccCCCceEEEEec
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-----------MNYDPPCQQPEQVIGLNSHSDASALTILLQI 149 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 149 (195)
+.||+.+++|+++|.+|+.+|+++||++||+++++|.+ ++|||||++++..+|+++|||+|+||||+|+
T Consensus 165 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~ 244 (357)
T PLN02216 165 LPFRDTLETYSAEVKSIAKILFAKMASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQV 244 (357)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEec
Confidence 99999999999999999999999999999999988765 8999999998889999999999999999995
Q ss_pred CCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 150 NEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 150 ~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
++++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 245 ~~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kS~~ 288 (357)
T PLN02216 245 NEVEGLQIKKDGKWVSVKPLPNALVVNVGDILEIITNGTYRSIE 288 (357)
T ss_pred CCCCceeEEECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccC
Confidence 56999999999999999999999999999999999999999985
No 2
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.9e-56 Score=372.92 Aligned_cols=192 Identities=43% Similarity=0.755 Sum_probs=174.0
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.+++++++++++ +||+||.|+|+++....+..+||+...........||+|.|.++..|.....+|.||+.+
T Consensus 88 v~nHGi~~~l~~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~WP~~~ 166 (361)
T PLN02758 88 VINHGIELELLEEIEKVAR-EFFMLPLEEKQKYPMAPGTVQGYGQAFVFSEDQKLDWCNMFALGVEPHFIRNPKLWPTKP 166 (361)
T ss_pred EecCCCCHHHHHHHHHHHH-HHhcCCHHHHHHhcccCCCccccCcccccccccccCeeEEEEeeccCccccccccCcccc
Confidence 6899999999999999999 999999999999987555678997654444456689999999887665445689999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCceEEEEecC
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTILLQIN 150 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~~ 150 (195)
++||+.+++|+++|.+++.+|+++|+++||+++++|.+ ++|||+|+.++..+|+++|||+|+||||+|++
T Consensus 167 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YP~~~~~~~~~g~~~HtD~g~lTlL~qd~ 246 (361)
T PLN02758 167 ARFSETLEVYSREIRELCQRLLKYIAMTLGLKEDRFEEMFGEAVQAVRMNYYPPCSRPDLVLGLSPHSDGSALTVLQQGK 246 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhHHHhcCccceeeeecCCCCCCcccccCccCccCCceeEEEEeCC
Confidence 89999999999999999999999999999999998876 89999999988899999999999999999943
Q ss_pred -CCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 151 -EMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 151 -~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 247 ~~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~SNG~~kS~~ 290 (361)
T PLN02758 247 GSCVGLQILKDNTWVPVHPVPNALVINIGDTLEVLTNGKYKSVE 290 (361)
T ss_pred CCCCCeeeeeCCEEEeCCCCCCeEEEEccchhhhhcCCeeeccc
Confidence 4899999999999999999999999999999999999999985
No 3
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=100.00 E-value=3.3e-56 Score=370.61 Aligned_cols=190 Identities=33% Similarity=0.597 Sum_probs=170.7
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||++++++++++.++ +||+||.|+|+++......++||+.........+.||+|.|.+...|.. ...|.||+.+
T Consensus 83 vvnHGI~~~l~~~~~~~~~-~FF~LP~EeK~k~~~~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~~~p~~-~~~~~wP~~~ 160 (358)
T PLN02254 83 VTNHGIPLSLLDDIESQTR-RLFSLPAQRKLKAARSPDGVSGYGVARISSFFNKKMWSEGFTIMGSPLE-HARQLWPQDH 160 (358)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhccCCCCcccccccccccccCCCCceeeEEeecCccc-cchhhCCCCc
Confidence 6899999999999999999 9999999999999765566789977554444566799999998655532 3578999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhh---------h------CcCCCCCCCCCcccccccccCCCceEE
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMK---------E------MNYDPPCQQPEQVIGLNSHSDASALTI 145 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~---------~------~~~yp~~~~~~~~~g~~~HtD~~~lTl 145 (195)
++||+++++|+++|.+|+.+||++|+++||+++++|. + +||||||+.++..+|+++|||+|+|||
T Consensus 161 ~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTi 240 (358)
T PLN02254 161 TKFCDVMEEYQKEMKKLAERLMWLMLGSLGITEEDIKWAGPKSGSQGAQAALQLNSYPVCPDPDRAMGLAPHTDSSLLTI 240 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhhcccccCcceeEEEecCCCCCCcccccCcCCccCCCcEEE
Confidence 9999999999999999999999999999999988763 1 999999999888999999999999999
Q ss_pred EEecCCCCceeeeeCC-eeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 146 LLQINEMDGLQIKKDG-NWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 146 L~q~~~~~GLqV~~~g-~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|+| +.++||||+++| +|++|+|+||++|||+||+||+||||+|||++
T Consensus 241 L~Q-d~v~GLQV~~~~~~Wi~V~p~pgalVVNiGD~lq~~SNg~~kS~~ 288 (358)
T PLN02254 241 LYQ-SNTSGLQVFREGVGWVTVPPVPGSLVVNVGDLLHILSNGRFPSVL 288 (358)
T ss_pred Eec-CCCCCceEECCCCEEEEcccCCCCEEEEhHHHHHHHhCCeecccc
Confidence 999 789999999865 89999999999999999999999999999985
No 4
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.4e-55 Score=366.08 Aligned_cols=192 Identities=35% Similarity=0.684 Sum_probs=170.8
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.++++++++.++ +||+||.|+|+++....+.++||++..........||+|.+.+...|......|.||+.+
T Consensus 79 l~nHGI~~~l~~~~~~~~~-~FF~LP~eeK~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~~~ 157 (348)
T PLN00417 79 VMNHGITEAFLDKIYKLTK-QFFALPTEEKQKCAREIGSIQGYGNDMILSDDQVLDWIDRLYLTTYPEDQRQLKFWPQVP 157 (348)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHHHhhcCCCCccccccccccccCCCcCccceeecccCCccccccccccccc
Confidence 6899999999999999999 999999999999987555678997643223345678999887765554334579999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-----------CcCCCCCCCCCcccccccccCCCceEEEEec
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-----------MNYDPPCQQPEQVIGLNSHSDASALTILLQI 149 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 149 (195)
++||+.+++|+++|.+++.+|+++||++||+++++|.+ ++|||||+.++..+|+++|||+|+||||+|+
T Consensus 158 ~~fr~~~~~y~~~~~~l~~~ll~~la~~LGl~~~~f~~~~~~~~~~~lRl~~YPp~~~~~~~~g~~~HTD~g~lTlL~qd 237 (348)
T PLN00417 158 VGFRETLHEYTMKQRLVIEKFFKAMARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPD 237 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCccceeeeeecCCCCCcccccCCcCccCCCceEEEEec
Confidence 99999999999999999999999999999999998854 8999999988888999999999999999994
Q ss_pred CCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 150 NEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 150 ~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+.++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 238 ~~v~GLQV~~~g~Wi~V~p~pg~lVVNiGD~Le~~Tng~~kSt~ 281 (348)
T PLN00417 238 KDVEGLQFLKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPV 281 (348)
T ss_pred CCCCceeEeECCeEEECCCCCCcEEEEcChHHHHHhCCeecccc
Confidence 46999999999999999999999999999999999999999985
No 5
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=100.00 E-value=3e-55 Score=364.87 Aligned_cols=191 Identities=31% Similarity=0.558 Sum_probs=168.1
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.++++++++.++ +||+||.|+|+++.......+||............||+|.|.+...|......|.||+.+
T Consensus 72 v~nHGI~~~li~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~Gy~~~~~~~~~~~~d~kE~~~~~~~~~~~~~~n~WP~~~ 150 (358)
T PLN02515 72 VVDHGVDANLVADMTRLAR-DFFALPAEEKLRFDMSGGKKGGFIVSSHLQGEAVQDWREIVTYFSYPVRTRDYSRWPDKP 150 (358)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHhcCCHHHHhhhCcCCCCccCcccccccccccccCceeeeccccCcccccccccccccc
Confidence 6899999999999999999 999999999999876554568996322222234579999997754454444578999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCceEEEEecC
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTILLQIN 150 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~~ 150 (195)
++||+.+++|+++|.+|+.+|+++|+++||+++++|.+ ++|||+|+.++..+|+++|||+|+||||+| +
T Consensus 151 ~~fr~~~~~y~~~~~~L~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HTD~g~lTlL~Q-d 229 (358)
T PLN02515 151 EGWRAVTEEYSEKLMGLACKLLEVLSEAMGLEKEALTKACVDMDQKVVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQ-D 229 (358)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHhhcCccceEEEeecCCCCChhhccCCCCCCCCCeEEEEec-C
Confidence 99999999999999999999999999999999998875 899999998888899999999999999999 7
Q ss_pred CCCceeeeeCC--eeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 151 EMDGLQIKKDG--NWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 151 ~~~GLqV~~~g--~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+++||||++++ +|++|+|+||++|||+||+||+||||+||||+
T Consensus 230 ~v~GLQV~~~~~~~Wi~Vpp~pgalVVNiGD~L~~~TNG~~kSt~ 274 (358)
T PLN02515 230 QVGGLQATRDGGKTWITVQPVEGAFVVNLGDHGHYLSNGRFKNAD 274 (358)
T ss_pred CCCceEEEECCCCeEEECCCCCCeEEEEccHHHHHHhCCeeeeec
Confidence 89999998743 79999999999999999999999999999985
No 6
>PLN02276 gibberellin 20-oxidase
Probab=100.00 E-value=3.1e-55 Score=365.73 Aligned_cols=191 Identities=29% Similarity=0.511 Sum_probs=170.5
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCC-------CCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIH-------SRRP 73 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~-------~~~~ 73 (195)
|+||||+.+++++++++++ +||+||.|+|+++....+..+||.+.......+..||+|.|.++..+.. ...+
T Consensus 76 l~nHGI~~~l~~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~GY~~~~~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~ 154 (361)
T PLN02276 76 VVNHGVDAALIRAAHEYMD-AFFKLPLSEKQRAQRKPGESCGYASSHTGRFSSKLPWKETLSFGYHADGGSSPVVVDYFK 154 (361)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhccCCCCccccCccCccccCCCCCeeeeEEEeccCcccccccchhccc
Confidence 6899999999999999999 9999999999998765556789987654444556799999999754321 1234
Q ss_pred CCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCce
Q 040640 74 HLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASAL 143 (195)
Q Consensus 74 ~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~l 143 (195)
|.||+..++||+.+++|+.+|.+++.+||++||++||+++++|.+ ++|||+|+.++..+|+++|||+|+|
T Consensus 155 ~~~p~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~l 234 (361)
T PLN02276 155 SVLGEDFEQFGKVYQEYCEAMKTLSLKIMELLGISLGVDRGYYRKFFEDGDSIMRCNYYPPCQEPELTLGTGPHCDPTSL 234 (361)
T ss_pred ccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeEeCCCCCCcccccCCccccCCcee
Confidence 678876778999999999999999999999999999999998876 8999999988888999999999999
Q ss_pred EEEEecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 144 TILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 144 TlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|||+| +.++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 235 TlL~Q-d~v~GLQV~~~g~Wi~V~p~pgalVVNiGD~L~~~TNG~~kSt~ 283 (361)
T PLN02276 235 TILHQ-DQVGGLQVFVDNKWRSVRPRPGALVVNIGDTFMALSNGRYKSCL 283 (361)
T ss_pred EEEEe-cCCCceEEEECCEEEEcCCCCCeEEEEcHHHHHHHhCCcccccc
Confidence 99999 78999999999999999999999999999999999999999985
No 7
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=8.3e-55 Score=363.25 Aligned_cols=191 Identities=34% Similarity=0.682 Sum_probs=170.3
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC--CCccccccccccccccccCCcccccccccCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP--GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPK 78 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~ 78 (195)
|+||||++++++++++.++ +||+||.|+|+++.... +.++||+........+..||+|.+.....|.....+|.||+
T Consensus 83 l~nHGI~~~l~~~~~~~~~-~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~n~wP~ 161 (360)
T PLN03178 83 LVGHGIPADLLDRVRKAGE-AFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHLTLPEDKRDPSLWPK 161 (360)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccccCCccccccccCCC
Confidence 6899999999999999999 99999999999998753 35789965443333456789998766444444446899999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-------------CcCCCCCCCCCcccccccccCCCceEE
Q 040640 79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-------------MNYDPPCQQPEQVIGLNSHSDASALTI 145 (195)
Q Consensus 79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------~~~yp~~~~~~~~~g~~~HtD~~~lTl 145 (195)
.+++||+.+++|+++|.+++.+|+++||++||+++++|.+ ++|||+|+.++..+|+++|||+|+|||
T Consensus 162 ~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTl 241 (360)
T PLN03178 162 TPPDYVPATSEYSRSLRSLATKLLAILSLGLGLPEDRLEKEVGGLEELLLQMKINYYPRCPQPDLALGVEAHTDVSALTF 241 (360)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccchhhhheeccCCCCCCccccCcCCccCCCceEE
Confidence 8899999999999999999999999999999999988765 799999998888999999999999999
Q ss_pred EEecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 146 LLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 146 L~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|+| +.++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 242 L~q-d~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~L~~~TNG~~kSt~ 288 (360)
T PLN03178 242 ILH-NMVPGLQVLYEGKWVTAKCVPDSIVVHIGDTLEILSNGRYKSIL 288 (360)
T ss_pred Eee-CCCCceeEeECCEEEEcCCCCCeEEEEccHHHHHHhCCcccccc
Confidence 999 78999999999999999999999999999999999999999985
No 8
>PLN02997 flavonol synthase
Probab=100.00 E-value=1.4e-54 Score=356.97 Aligned_cols=187 Identities=28% Similarity=0.490 Sum_probs=167.4
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+++++++++++++ +||+||.|+|+++... ...+||.+... .+..||+|.+.....|......|.||+.+
T Consensus 62 v~nHGI~~~li~~~~~~~~-~FF~LP~eeK~k~~~~-~~~~GY~~~~~---~~~~d~~e~~~~~~~p~~~~~~n~wP~~~ 136 (325)
T PLN02997 62 VVNHGIPTELMRQLQMVGK-QFFELPEAEKETVAKE-EDFEGYKRNYL---GGINNWDEHLFHRLSPPSIINYKYWPKNP 136 (325)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHcCCHHHHhhhccC-CCccccCcccc---cCCCCccceeEeeecCccccccccCCCCc
Confidence 6899999999999999999 9999999999998763 45789976432 35568999876544443334568999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh------------CcCCCCCCCCCcccccccccCCCceEEEEe
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE------------MNYDPPCQQPEQVIGLNSHSDASALTILLQ 148 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~------------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q 148 (195)
++||+++++|+++|.+++.+|+++|+++||+++++|.+ ++|||||+.++..+|+++|||+|+||||+|
T Consensus 137 ~~fr~~~~~y~~~~~~l~~~ll~~ia~~Lgl~~~~f~~~~~~~~~~~~lRl~~YP~~~~~~~~~g~~~HTD~g~lTlL~Q 216 (325)
T PLN02997 137 PQYREVTEEYTKHMKRLTEKILGWLSEGLGLPRETFTQSIGGETAEYVLRVNFYPPTQDTELVIGAAAHSDMGAIALLIP 216 (325)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCcccceeeeecCCCCCCcccccCccCccCCCceEEEec
Confidence 99999999999999999999999999999999988865 899999998888899999999999999999
Q ss_pred cCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 149 INEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 149 ~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
++++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 217 -d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~Le~~TNG~~kSt~ 260 (325)
T PLN02997 217 -NEVPGLQAFKDEQWLDLNYINSAVVVIIGDQLMRMTNGRFKNVL 260 (325)
T ss_pred -CCCCCEEEeECCcEEECCCCCCeEEEEechHHHHHhCCcccccc
Confidence 78999999999999999999999999999999999999999985
No 9
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=1.4e-54 Score=361.98 Aligned_cols=192 Identities=34% Similarity=0.675 Sum_probs=170.7
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.+++++++++++ +||+||.|+|+++......++||+...........||+|.|.+...+.....+|.||+.+
T Consensus 87 l~nHGI~~~li~~~~~~~~-~FF~LP~eeK~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~~~~~~~~~~n~wP~~~ 165 (362)
T PLN02393 87 VVNHGVRPELMDRAREAWR-EFFHLPLEVKQRYANSPATYEGYGSRLGVEKGAILDWSDYYFLHYLPSSLKDPNKWPSLP 165 (362)
T ss_pred EEeCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhhcccCcccccccccccccccccCchhheeeeecCccccchhhCcccc
Confidence 6899999999999999999 999999999999986555679995332222345679999988765454445679999988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-------------CcCCCCCCCCCcccccccccCCCceEEEE
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-------------MNYDPPCQQPEQVIGLNSHSDASALTILL 147 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~ 147 (195)
++||+.+++|+++|.+++.+||++||++||+++++|.+ ++|||+|+.++..+|+++|||+|+||||+
T Consensus 166 ~~fr~~~~~y~~~~~~la~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YP~~p~~~~~~g~~~HtD~g~lTlL~ 245 (362)
T PLN02393 166 PSCRELIEEYGEEVVKLCGRLMKVLSVNLGLEEDRLQNAFGGEDGVGACLRVNYYPKCPQPDLTLGLSPHSDPGGMTILL 245 (362)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccccceeeeeecCCCCCcccccccccccCCceEEEEe
Confidence 99999999999999999999999999999999988864 79999999888889999999999999999
Q ss_pred ecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 148 QINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 148 q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|++.++||||+++|+|++|+|.||++|||+||+||+||||+|||++
T Consensus 246 q~~~v~GLQV~~~g~W~~V~p~pgalVVNiGD~l~~~Tng~~kSt~ 291 (362)
T PLN02393 246 PDDNVAGLQVRRDDAWITVKPVPDAFIVNIGDQIQVLSNAIYKSVE 291 (362)
T ss_pred eCCCCCcceeeECCEEEECCCCCCeEEEEcchhhHhhcCCeeeccc
Confidence 8557899999999999999999999999999999999999999985
No 10
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=100.00 E-value=2.5e-54 Score=354.34 Aligned_cols=192 Identities=40% Similarity=0.764 Sum_probs=175.5
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.++++++++.++ +||+||.|+|+++........||+...........+|.|.+.+...|...+..+.||+.+
T Consensus 52 viNHGI~~~l~~~~~~~~~-~fF~lP~eeK~k~~~~~~~~~gY~~~~~~~~~~~~~w~d~~~~~~~p~~~~~~~~wp~~p 130 (322)
T KOG0143|consen 52 VINHGISLELLDKVKEASK-EFFELPLEEKLKVASEPGKYRGYGTSFILSPLKELDWRDYLTLLSAPESSFDPNLWPEGP 130 (322)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHhcCCHHHHHhhccCCCCcccccccccccccccccchhheeeeccCccccCcccCcccc
Confidence 6899999999999999999 999999999999998655679998766554556789999999877776557889999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-----------CcCCCCCCCCCcccccccccCCCceEEEEec
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-----------MNYDPPCQQPEQVIGLNSHSDASALTILLQI 149 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 149 (195)
+.||+++++|.+++.+++.+|+++++++||++..++.+ +||||||++++.++|+++|||.++||+|+|+
T Consensus 131 ~~~re~~~eY~~~~~~L~~~l~~~l~eslgl~~~~~~~~~~~~~~~~~r~n~Yp~cp~pe~~lGl~~HtD~~~lTiLlqd 210 (322)
T KOG0143|consen 131 PEFRETMEEYAKEVMELSEKLLRLLSESLGLEPEYLEKLFGETGGQVMRLNYYPPCPEPELTLGLGAHTDKSFLTILLQD 210 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCCccceEEEEeecCCCcCccccccccCccCcCceEEEEcc
Confidence 99999999999999999999999999999998654433 9999999999999999999999999999995
Q ss_pred CCCCceeee-eCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 150 NEMDGLQIK-KDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 150 ~~~~GLqV~-~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
++++||||. ++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 211 ~~V~GLQv~~~dg~Wi~V~P~p~a~vVNiGD~l~~lSNG~ykSv~ 255 (322)
T KOG0143|consen 211 DDVGGLQVFTKDGKWIDVPPIPGAFVVNIGDMLQILSNGRYKSVL 255 (322)
T ss_pred CCcCceEEEecCCeEEECCCCCCCEEEEcccHHhHhhCCcccceE
Confidence 589999999 59999999999999999999999999999999985
No 11
>PLN02704 flavonol synthase
Probab=100.00 E-value=3.6e-54 Score=356.47 Aligned_cols=191 Identities=33% Similarity=0.641 Sum_probs=167.9
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC--CCccccccccccccccccCCcccccccccCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP--GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPK 78 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~ 78 (195)
|+||||++++++++++.++ +||+||.|+|+++.... ..++||............+|+|.+.....|......|.||+
T Consensus 72 l~nHGI~~~l~~~~~~~~~-~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~n~wP~ 150 (335)
T PLN02704 72 IVNHGIPSEVISKLQKVGK-EFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHRIWPPSAINYQFWPK 150 (335)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEeeecCCcccchhhCcc
Confidence 6899999999999999999 99999999999997653 34689976543334456688887755433332234689998
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh------------CcCCCCCCCCCcccccccccCCCceEEE
Q 040640 79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE------------MNYDPPCQQPEQVIGLNSHSDASALTIL 146 (195)
Q Consensus 79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~------------~~~yp~~~~~~~~~g~~~HtD~~~lTlL 146 (195)
.+++||+.+++|+++|.+++.+|+++|+++||+++++|.+ ++|||||+.++..+|+++|||+|+||||
T Consensus 151 ~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL 230 (335)
T PLN02704 151 NPPSYREVNEEYAKYLRGVADKLFKTLSLGLGLEEDELKEAVGGEELEYLLKINYYPPCPRPDLALGVVAHTDMSAITIL 230 (335)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCchhhhhhhhcCCCCCCcccccCccCccCCcceEEE
Confidence 8899999999999999999999999999999999988864 7899999988888999999999999999
Q ss_pred EecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 147 LQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 147 ~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+| +.++||||+++|+|++|+|.||++|||+||+||+||||+|||++
T Consensus 231 ~q-d~v~GLQV~~~g~Wi~V~p~pg~lvVNvGD~L~~~TNg~~kSt~ 276 (335)
T PLN02704 231 VP-NEVQGLQVFRDDHWFDVKYIPNALVIHIGDQIEILSNGKYKSVL 276 (335)
T ss_pred ec-CCCCceeEeECCEEEeCCCCCCeEEEEechHHHHHhCCeeeccc
Confidence 99 78999999999999999999999999999999999999999985
No 12
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=4.2e-54 Score=357.20 Aligned_cols=189 Identities=32% Similarity=0.591 Sum_probs=164.3
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC--CCccccccccccccccccCCcccccccccCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP--GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPK 78 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~ 78 (195)
|+||||+.+++++++++++ +||+||.|+|+++.... +..++|.... .......||+|.+.+...+.. ..+|.||+
T Consensus 74 v~nHGI~~~l~~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~~~-~~~n~wP~ 150 (348)
T PLN02912 74 IKNHGVPEETIKKMMNVAR-EFFHQSESERVKHYSADTKKTTRLSTSFN-VSKEKVSNWRDFLRLHCYPIE-DFIEEWPS 150 (348)
T ss_pred EEeCCCCHHHHHHHHHHHH-HHhcCCHHHHHhHhhcCCCCccccccccc-ccccccCCchheEEEeecCcc-cccccCcc
Confidence 6899999999999999999 99999999999964432 2234443221 223445799999887644432 24789999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCceEEEEe
Q 040640 79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTILLQ 148 (195)
Q Consensus 79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q 148 (195)
.+++||+++++|+++|.+++.+|+++||++||+++++|.+ ++|||||+.++..+|+++|||+|+||||+|
T Consensus 151 ~~~~fr~~~~~y~~~~~~l~~~il~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~~~~~~~~G~~~HtD~g~lTlL~Q 230 (348)
T PLN02912 151 TPISFREVTAEYATSVRALVLTLLEAISESLGLEKDRVSNTLGKHGQHMAINYYPPCPQPELTYGLPGHKDANLITVLLQ 230 (348)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCccceeeeeecCCCCChhhcCCcCCCcCCCceEEEEE
Confidence 8899999999999999999999999999999999988865 899999998888899999999999999999
Q ss_pred cCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 149 INEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 149 ~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
++++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 231 -d~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~L~~~TNG~~kSt~ 274 (348)
T PLN02912 231 -DEVSGLQVFKDGKWIAVNPIPNTFIVNLGDQMQVISNDKYKSVL 274 (348)
T ss_pred -CCCCceEEEECCcEEECCCcCCeEEEEcCHHHHHHhCCEEEccc
Confidence 78999999999999999999999999999999999999999985
No 13
>PLN02485 oxidoreductase
Probab=100.00 E-value=6.8e-54 Score=354.45 Aligned_cols=192 Identities=29% Similarity=0.498 Sum_probs=167.9
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC-CCccccccccccccccccCCccccccccc--CC-------CC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP-GDIEGFGQLFIASEEQKLDWGYGFTIFTL--PI-------HS 70 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~--p~-------~~ 70 (195)
|+||||+++++++++++++ +||+||.|+|+++.... ..++||.+.+.....+..||+|.|.+... +. ..
T Consensus 50 l~nHGi~~~l~~~~~~~~~-~FF~lP~e~K~~~~~~~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~ 128 (329)
T PLN02485 50 VKGHGISDSLIKKVREVTH-EFFELPYEEKLKIKMTPAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVM 128 (329)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhcccCCCCCCCcccccccccCCCCCcchhhhhcccCCCCccccccccc
Confidence 6899999999999999999 99999999999987644 45789987654444556799999987642 11 12
Q ss_pred CCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-----------CcCCCCCCC----CCcccccc
Q 040640 71 RRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-----------MNYDPPCQQ----PEQVIGLN 135 (195)
Q Consensus 71 ~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-----------~~~yp~~~~----~~~~~g~~ 135 (195)
..+|.||+.+++||+.+++|+++|.+++.+|+++||++||+++++|.+ ++|||+++. ++..+|++
T Consensus 129 ~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~~a~~Lgl~~~~f~~~~~~~~~~~lrl~~YP~~~~~~~~~~~~~g~~ 208 (329)
T PLN02485 129 EGPNQWPENPQEFKALMEEYIKLCTDLSRKILRGIALALGGSPDEFEGKMAGDPFWVMRIIGYPGVSNLNGPPENDIGCG 208 (329)
T ss_pred CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhhhhccCccceEEEEeCCCCccccCCcccCcccc
Confidence 458999998899999999999999999999999999999999888753 999999985 45679999
Q ss_pred cccCCCceEEEEecCCCCceeeee-CCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 136 SHSDASALTILLQINEMDGLQIKK-DGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 136 ~HtD~~~lTlL~q~~~~~GLqV~~-~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+|||+|+||||+|++.++||||+. +|+|++|+|.||++|||+||+||+||||+||||+
T Consensus 209 ~HTD~g~lTlL~qd~~~~GLqV~~~~g~Wi~V~p~pg~~vVNiGD~L~~~TnG~~~St~ 267 (329)
T PLN02485 209 AHTDYGLLTLVNQDDDITALQVRNLSGEWIWAIPIPGTFVCNIGDMLKIWSNGVYQSTL 267 (329)
T ss_pred cccCCCeEEEEeccCCCCeeeEEcCCCcEEECCCCCCcEEEEhHHHHHHHHCCEeeCCC
Confidence 999999999999944689999985 8999999999999999999999999999999985
No 14
>PLN02947 oxidoreductase
Probab=100.00 E-value=2.7e-54 Score=360.75 Aligned_cols=190 Identities=32% Similarity=0.581 Sum_probs=166.7
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC-CCccccccccccccccccCCcccccccccCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP-GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKL 79 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~ 79 (195)
|+||||+.++++++++.++ +||+||.|+|+++.... ....||+.......+...+|+|.+.+...|.. ...|.||+.
T Consensus 99 v~nHGIp~~li~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~~~p~~-~~~~~WP~~ 176 (374)
T PLN02947 99 VVNHGVPSEVIGGMIDVAR-RFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLVCHPLS-DVLPHWPSS 176 (374)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeeecCCcc-cccccCccc
Confidence 6899999999999999999 99999999999986543 33467865433334556799999887665542 246899998
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---hhhhhh----------CcCCCCCCCCCcccccccccCCCceEEE
Q 040640 80 PLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMD---PNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTIL 146 (195)
Q Consensus 80 ~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~---~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL 146 (195)
+++||+.+++|+++|.+|+.+|+++||++||++ .++|.+ ++|||||++++..+|+++|||+|+||||
T Consensus 177 ~~~fr~~~~~Y~~~~~~L~~~ll~~la~~Lgl~~~~~~~~~~~~~~~~~~lrln~YPp~p~~~~~~G~~~HTD~g~lTlL 256 (374)
T PLN02947 177 PADLRKVAATYAKATKRLFLELMEAILESLGIVKRGSDELLEEFEAGSQMMVVNCYPACPEPELTLGMPPHSDYGFLTLL 256 (374)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccchHHHHHHhcCcceeeeeecCCCCCCcccccCCCCccCCCceEEE
Confidence 999999999999999999999999999999997 345433 8999999999889999999999999999
Q ss_pred EecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 147 LQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 147 ~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+| ++++||||+++|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 257 ~Q-d~v~GLQV~~~g~Wi~V~p~pga~VVNvGD~Lq~~SNG~~kS~~ 302 (374)
T PLN02947 257 LQ-DEVEGLQIMHAGRWVTVEPIPGSFVVNVGDHLEIFSNGRYKSVL 302 (374)
T ss_pred Ee-cCCCCeeEeECCEEEeCCCCCCeEEEEeCceeeeeeCCEEeccc
Confidence 99 78999999999999999999999999999999999999999985
No 15
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=100.00 E-value=5.2e-54 Score=340.47 Aligned_cols=190 Identities=25% Similarity=0.401 Sum_probs=175.6
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC-CCccccccccccccccccCCcccccccccCC----------C
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP-GDIEGFGQLFIASEEQKLDWGYGFTIFTLPI----------H 69 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~----------~ 69 (195)
|+||||+.+++++++++++ +||+||.|+|.++.+.. ..++||.+.+.+...+..||+|.+.++.+-. .
T Consensus 41 l~~~~i~~~~~~~~~~~ar-qFFaLp~eeK~~~~~~~~~~~rGY~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~ 119 (322)
T COG3491 41 LVNHGIDAALIDEAFALAR-QFFALPVEEKLKILMVLGRQHRGYTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTP 119 (322)
T ss_pred EeCCCCCHHHHHHHHHHHH-HHhcCCHHHHHHHHHhcCccccccccCcccccCCccchhhhcccccccccccCCCccCCC
Confidence 6899999999999999999 99999999999999866 4799999888887777789999999976411 3
Q ss_pred CCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccC
Q 040640 70 SRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSD 139 (195)
Q Consensus 70 ~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD 139 (195)
..++|.|| ..|+||+++..|+++|..++.+||++||++|+||+++|+. +++||+.+..++.-+.++|||
T Consensus 120 ~~gpN~wP-~ip~~r~~ll~~~~~~~~~~~rLL~aiA~~LdL~~d~Fd~~~~d~~~~~RLlrYP~~~~~~~~~~~GaHtD 198 (322)
T COG3491 120 LHGPNLWP-AIPGLRDALLQYYRAMTAVGLRLLRAIALGLDLPEDFFDKRTSDPNSVLRLLRYPSRPAREGADGVGAHTD 198 (322)
T ss_pred cCCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhccCCchheEEEEecCCCcccccccccccccC
Confidence 45899999 7899999999999999999999999999999999999976 999999888888788899999
Q ss_pred CCceEEEEecCCCCceeeeeC-CeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 140 ASALTILLQINEMDGLQIKKD-GNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 140 ~~~lTlL~q~~~~~GLqV~~~-g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+|+||||+| +.++||||+.. |+|++|+|+||++|||+||+||+||||+||||+
T Consensus 199 ~G~lTLl~Q-d~~~GLqv~~~~g~Wl~v~P~pgtlvVNiGdmLe~~Tng~lrST~ 252 (322)
T COG3491 199 YGLLTLLFQ-DDVGGLEVRPPNGGWLDVPPIPGTLVVNIGDMLERWTNGRLRSTV 252 (322)
T ss_pred CCeEEEEEe-cccCCeEEecCCCCeeECCCCCCeEEEeHHHHHHHHhCCeecccc
Confidence 999999999 89999999985 999999999999999999999999999999986
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=100.00 E-value=1e-53 Score=352.33 Aligned_cols=191 Identities=24% Similarity=0.385 Sum_probs=168.4
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC-CCccccccccccc--cccccCCccccccccc-CCC-------
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP-GDIEGFGQLFIAS--EEQKLDWGYGFTIFTL-PIH------- 69 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~GY~~~~~~~--~~~~~d~~e~~~~~~~-p~~------- 69 (195)
|+||||+.+++++++++++ +||+||.|+|+++.... ...+||.+.+.+. .....||+|+|.++.. |..
T Consensus 41 v~nhgi~~~l~~~~~~~~~-~fF~lP~e~K~~~~~~~~~~~~GY~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~ 119 (320)
T PTZ00273 41 IVGHPIPQERIEKVLKMAK-TFFSLPMEEKLKIDIRKSRLHRGYGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAG 119 (320)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHcCCHHHHhhhccCCCCCCCCCCCccccccCCCCCCCccceEEeeccCCcccchhhcc
Confidence 6899999999999999999 99999999999987643 5678998765432 2345799999998742 211
Q ss_pred --CCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCC-Cccccccc
Q 040640 70 --SRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQP-EQVIGLNS 136 (195)
Q Consensus 70 --~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~-~~~~g~~~ 136 (195)
...+|.||+.+++||+.+++|+++|.+++.+|+++||++||+++++|.+ ++|||+++.+ +..+|+++
T Consensus 120 ~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~~g~~~ 199 (320)
T PTZ00273 120 KPLRGPNNHPTQVEGWMELMETHYRDMQALALVLLRALALAIGLREDFFDSKFMEPLSVFRMKHYPALPQTKKGRTVCGE 199 (320)
T ss_pred ccccCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHhhCCCcceeeeeecCCCCCccccCccccc
Confidence 2358999988899999999999999999999999999999999998876 8999999863 56789999
Q ss_pred ccCCCceEEEEecCCCCceeeee-CCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 137 HSDASALTILLQINEMDGLQIKK-DGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 137 HtD~~~lTlL~q~~~~~GLqV~~-~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|||+|+||||+| +.++||||+. +|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 200 HTD~g~lTlL~q-d~~~GLqV~~~~g~Wi~V~p~pg~lvVNvGD~l~~~TnG~~kSt~ 256 (320)
T PTZ00273 200 HTDYGIITLLYQ-DSVGGLQVRNLSGEWMDVPPLEGSFVVNIGDMMEMWSNGRYRSTP 256 (320)
T ss_pred ccCCCeEEEEec-CCCCceEEECCCCCEEeCCCCCCeEEEEHHHHHHHHHCCeeeCCC
Confidence 999999999999 7899999986 8999999999999999999999999999999985
No 17
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=9.5e-54 Score=355.23 Aligned_cols=189 Identities=31% Similarity=0.582 Sum_probs=165.7
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCC-----C------
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPI-----H------ 69 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~-----~------ 69 (195)
|+||||+.++++++++.++ +||+||.|+|+++.......+||.... ...+..||+|.|.+..... .
T Consensus 59 v~nHGi~~~l~~~~~~~~~-~FF~LP~eeK~~~~~~~~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~ 135 (345)
T PLN02750 59 VINHGVPSELRQRVEKVAK-EFFDQTTEEKRKVKRDEVNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDT 135 (345)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhccCCCCccCcCccc--ccccCCCceeEEEEeeccccccccccccccc
Confidence 6899999999999999999 999999999999976544457996422 2234569999998864311 0
Q ss_pred --CCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccc
Q 040640 70 --SRRPHLFPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSH 137 (195)
Q Consensus 70 --~~~~~~wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~H 137 (195)
...+|.||+.+++||+++++|+++|.+|+.+|+++||++||+++++|.+ ++|||||+.++..+|+++|
T Consensus 136 ~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lR~~~YPp~~~~~~~~g~~~H 215 (345)
T PLN02750 136 ELRKLTNQWPQNPSHFRELCQEYARQVEKLAFKLLELISLSLGLPADRLNGYFKDQISFARFNHYPPCPAPHLALGVGRH 215 (345)
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcceEEEEEecCCCCCcccccCcCCC
Confidence 0126899998899999999999999999999999999999999998876 9999999987778999999
Q ss_pred cCCCceEEEEecCCCCceeeee--CCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 138 SDASALTILLQINEMDGLQIKK--DGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 138 tD~~~lTlL~q~~~~~GLqV~~--~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
||+|+||||+| ++++||||+. +|+|++|+|+||++|||+||+||+||||+||||+
T Consensus 216 tD~g~lTlL~q-d~v~GLQV~~~~~g~Wi~V~p~pg~~vVNiGD~L~~~Tng~~~St~ 272 (345)
T PLN02750 216 KDGGALTVLAQ-DDVGGLQISRRSDGEWIPVKPIPDAFIINIGNCMQVWTNDLYWSAE 272 (345)
T ss_pred CCCCeEEEEec-CCCCceEEeecCCCeEEEccCCCCeEEEEhHHHHHHHhCCeeeccc
Confidence 99999999999 7899999974 7999999999999999999999999999999985
No 18
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.2e-53 Score=352.79 Aligned_cols=190 Identities=25% Similarity=0.420 Sum_probs=165.1
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccc----cccCCccccccccc-CCC------
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEE----QKLDWGYGFTIFTL-PIH------ 69 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~----~~~d~~e~~~~~~~-p~~------ 69 (195)
|+||||+.+++++++++++ +||+||.|+|+++... ..++||.+...+... ...||+|.|.++.. |..
T Consensus 44 l~nHGI~~~l~~~~~~~~~-~FF~LP~e~K~k~~~~-~~~~GY~~~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~ 121 (332)
T PLN03002 44 VINHGINEEFMDDVFEQSK-KFFALPLEEKMKVLRN-EKHRGYTPVLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDK 121 (332)
T ss_pred EeCCCCCHHHHHHHHHHHH-HHHcCCHHHHHhhccC-CCCCCcCcccccccccccCCCCcceeeeEecccCCCCCccccc
Confidence 6899999999999999999 9999999999998653 457999875543221 23799999988743 211
Q ss_pred -CCCCCCCCCC--CcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh------------CcCCCCCCCCC-cccc
Q 040640 70 -SRRPHLFPKL--PLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE------------MNYDPPCQQPE-QVIG 133 (195)
Q Consensus 70 -~~~~~~wP~~--~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~------------~~~yp~~~~~~-~~~g 133 (195)
...+|.||+. +++||+.+++|+++|.+|+.+|+++||++||+++++|.+ ++|||+|+.++ ..+|
T Consensus 122 ~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~lrl~~YP~~~~~~~~~~g 201 (332)
T PLN03002 122 PFYGPNPWPDADVLPGWRETMEKYHQEALRVSMAIAKLLALALDLDVGYFDRTEMLGKPIATMRLLRYQGISDPSKGIYA 201 (332)
T ss_pred cccCCCCCcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhccccccCCCchheeeeeCCCCCCcccCccc
Confidence 1357999975 689999999999999999999999999999999998873 89999998665 4799
Q ss_pred cccccCCCceEEEEecCCCCceeeeeC-----CeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 134 LNSHSDASALTILLQINEMDGLQIKKD-----GNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 134 ~~~HtD~~~lTlL~q~~~~~GLqV~~~-----g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+++|||+|+||||+| ++++||||+++ |+|++|+|+||++|||+||+||+||||+|||++
T Consensus 202 ~~~HTD~g~lTlL~q-d~v~GLQV~~~~~~~~g~Wi~Vpp~pg~~VVNiGD~L~~wTng~~kSt~ 265 (332)
T PLN03002 202 CGAHSDFGMMTLLAT-DGVMGLQICKDKNAMPQKWEYVPPIKGAFIVNLGDMLERWSNGFFKSTL 265 (332)
T ss_pred cccccCCCeEEEEee-CCCCceEEecCCCCCCCcEEECCCCCCeEEEEHHHHHHHHhCCeeECcC
Confidence 999999999999999 78999999863 689999999999999999999999999999985
No 19
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.4e-53 Score=353.29 Aligned_cols=190 Identities=35% Similarity=0.639 Sum_probs=164.2
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC--CCccccccccccccccccCCcccccccccCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP--GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPK 78 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~--~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~ 78 (195)
|+||||+.++++++++.++ +||+||.|+|+++.... +..++|.... .......+|+|.+.+...|.. ..+|.||+
T Consensus 67 v~nHGI~~~l~~~~~~~~~-~fF~LP~e~K~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~p~~-~~~n~wP~ 143 (337)
T PLN02639 67 VINHGVSAELVEKMLAVAH-EFFRLPVEEKMKLYSDDPTKTMRLSTSFN-VRKEKVHNWRDYLRLHCYPLD-KYVPEWPS 143 (337)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHhcCCHHHHhhhhccCCCCccccccccc-cccCcccCchheEEeeecCCc-ccchhCcc
Confidence 6899999999999999999 99999999999986533 2233333222 222345689999987655532 24688999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCceEEEEe
Q 040640 79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTILLQ 148 (195)
Q Consensus 79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q 148 (195)
.+++||+.+++|+++|.+++.+|+++||++||+++++|++ ++|||+|+.++..+|+++|||+|+||||+|
T Consensus 144 ~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HTD~g~lTlL~q 223 (337)
T PLN02639 144 NPPSFKEIVSTYCREVRELGFRLQEAISESLGLEKDYIKNVLGEQGQHMAVNYYPPCPEPELTYGLPAHTDPNALTILLQ 223 (337)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhCCCccEEEEEcCCCCCCcccccCCCCCcCCCceEEEEe
Confidence 8899999999999999999999999999999999999865 899999998888899999999999999999
Q ss_pred cCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 149 INEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 149 ~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
++.++||||+++|+|++|+|.||++|||+||+||+||||+|||++
T Consensus 224 d~~v~GLQV~~~g~Wi~V~p~pg~lVVNiGD~L~~~TNG~~kSt~ 268 (337)
T PLN02639 224 DQQVAGLQVLKDGKWVAVNPHPGAFVINIGDQLQALSNGRYKSVW 268 (337)
T ss_pred cCCcCceEeecCCeEEeccCCCCeEEEechhHHHHHhCCeeeccC
Confidence 335999999999999999999999999999999999999999985
No 20
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=100.00 E-value=4.1e-53 Score=347.87 Aligned_cols=185 Identities=29% Similarity=0.529 Sum_probs=163.1
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||+.+++++++++++ +||+||.|+|+++... .+||.+... .....||+|.|.+...|. ...+.||+.+
T Consensus 39 v~nHGI~~~l~~~~~~~~~-~fF~LP~e~K~~~~~~---~~gy~~~~~--~~~~~d~ke~~~~~~~~~--~~~~~wP~~~ 110 (321)
T PLN02299 39 LVNHGISHELMDEVEKMTK-EHYKKCMEQRFKEMVA---SKGLEGVQT--EVEDLDWESTFFLRHLPE--SNLADIPDLD 110 (321)
T ss_pred EECCCCCHHHHHHHHHHHH-HHhCCCHHHHHhcccC---CCCcccccc--cCCCcCHHHHcccccCCc--cccccCcccc
Confidence 6899999999999999999 9999999999997542 467754322 234569999998864443 2457899988
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-------------CcCCCCCCCCCcccccccccCCCceEEEE
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-------------MNYDPPCQQPEQVIGLNSHSDASALTILL 147 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~ 147 (195)
++||+.+++|+++|.+++.+|+++|+++||+++++|.+ ++|||||+.++..+|+++|||+|+||||+
T Consensus 111 ~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lRl~~YPp~~~~~~~~G~~~HTD~g~lTlL~ 190 (321)
T PLN02299 111 DEYRKVMKDFALELEKLAEELLDLLCENLGLEKGYLKKAFHGSKGPTFGTKVSNYPPCPKPDLVKGLRAHTDAGGIILLF 190 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCCCCccceeeeEecCCCCCcccccCccCccCCCeEEEEE
Confidence 99999999999999999999999999999999988743 79999999888788999999999999999
Q ss_pred ecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 148 QINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 148 q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|++.++||||+++|+|++|+|.||++|||+||+||+||||+|||++
T Consensus 191 qd~~v~GLQV~~~g~Wi~V~p~pg~lvVNiGD~l~~~Tng~~kS~~ 236 (321)
T PLN02299 191 QDDKVSGLQLLKDGEWVDVPPMRHSIVVNLGDQLEVITNGKYKSVM 236 (321)
T ss_pred ecCCCCCcCcccCCeEEECCCCCCeEEEEeCHHHHHHhCCceeccc
Confidence 9446999999999999999999999999999999999999999985
No 21
>PLN02904 oxidoreductase
Probab=100.00 E-value=8.6e-53 Score=350.25 Aligned_cols=189 Identities=29% Similarity=0.533 Sum_probs=162.9
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC-CCccccccccccccccccCCcccccccccCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP-GDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKL 79 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~-~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~ 79 (195)
|+||||+.+++++++++++ +||+||.|+|+++.... ....||+...........+|+|.+.....|.. ..+|.||+.
T Consensus 85 v~nHGI~~~li~~~~~~~~-~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~~~p~~-~~~n~WP~~ 162 (357)
T PLN02904 85 VINHGIPSSVVKDALDAAT-RFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHYSHPLS-KWINLWPSN 162 (357)
T ss_pred EEeCCCCHHHHHHHHHHHH-HHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeeccCCcc-cccccCccc
Confidence 6899999999999999999 99999999999987543 23346654322223345578887765433322 246899988
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCceEEEEec
Q 040640 80 PLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTILLQI 149 (195)
Q Consensus 80 ~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~ 149 (195)
+++||+.+++|+++|.+|+.+|+++||++||+++++|.+ ++|||||+.++..+|+++|||+|+||||+|
T Consensus 163 ~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YPp~p~~~~~~g~~~HtD~g~lTlL~q- 241 (357)
T PLN02904 163 PPCYKEKVGKYAEATHVLHKQLIEAISESLGLEKNYLQEEIEEGSQVMAVNCYPACPEPEIALGMPPHSDFGSLTILLQ- 241 (357)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcccEEEeeecCCCCCcccccCCcCccCCCceEEEec-
Confidence 899999999999999999999999999999999999876 899999998888999999999999999999
Q ss_pred CCCCceeeee-CCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 150 NEMDGLQIKK-DGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 150 ~~~~GLqV~~-~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+ .+||||++ +|+|++|+|+||++|||+||+||+||||+|||++
T Consensus 242 d-~~GLQV~~~~g~Wi~V~p~pgalVVNiGD~Le~~TNG~~kSt~ 285 (357)
T PLN02904 242 S-SQGLQIMDCNKNWVCVPYIEGALIVQLGDQVEVMSNGIYKSVV 285 (357)
T ss_pred C-CCeeeEEeCCCCEEECCCCCCeEEEEccHHHHHHhCCeeeccC
Confidence 5 48999997 7999999999999999999999999999999985
No 22
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=100.00 E-value=5.1e-52 Score=342.57 Aligned_cols=188 Identities=29% Similarity=0.471 Sum_probs=161.1
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCC--CCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIH--SRRPHLFPK 78 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~--~~~~~~wP~ 78 (195)
|+||||+.++++++++.++ +||+||.|+|+++... ..+||+.... ......+|+|.+.+...+.. ...+|.||+
T Consensus 53 v~nHGI~~~li~~~~~~~~-~FF~LP~e~K~~~~~~--~~~Gy~~~~~-~~~~~~~~~e~~~~~~~~~~~~~~~~~~wp~ 128 (335)
T PLN02156 53 VINHGVRPDLLTQLEQEAI-GFFALPHSLKDKAGPP--DPFGYGTKRI-GPNGDVGWLEYILLNANLCLESHKTTAVFRH 128 (335)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHcCCHHHHhhcCCC--CCcccCcccc-CCCCCCCceeeEeeecCCccccccchhcCcc
Confidence 6899999999999999999 9999999999998653 3459964322 12234689999988764432 124788998
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhhhh------------CcCCCCCCCC--CcccccccccCCCce
Q 040640 79 LPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMD-PNEMKE------------MNYDPPCQQP--EQVIGLNSHSDASAL 143 (195)
Q Consensus 79 ~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~-~~~~~~------------~~~yp~~~~~--~~~~g~~~HtD~~~l 143 (195)
.++.||+.+++|+++|.+|+.+|+++||++||++ +++|.+ ++|||+|+.. +..+|+++|||+|+|
T Consensus 129 ~p~~fr~~~~~Y~~~~~~L~~~ll~~la~~LGl~~~~~f~~~~~~~~~~~~lRl~~YP~~~~~~~~~~~g~~~HTD~g~l 208 (335)
T PLN02156 129 TPAIFREAVEEYMKEMKRMSSKVLEMVEEELKIEPKEKLSKLVKVKESDSCLRMNHYPEKEETPEKVEIGFGEHTDPQLI 208 (335)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCcHHHHHHHhcCCCccceEeEEeCCCCCCCccccccCCCCccCCCce
Confidence 8889999999999999999999999999999996 456643 8999999853 357999999999999
Q ss_pred EEEEecCCCCceeee-eCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 144 TILLQINEMDGLQIK-KDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 144 TlL~q~~~~~GLqV~-~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|||+| ++++||||+ ++|+|++|+|+||++|||+||+||+||||+|||+.
T Consensus 209 TlL~Q-d~v~GLQV~~~~g~Wi~Vpp~pga~VVNiGD~l~~wTNg~~kSt~ 258 (335)
T PLN02156 209 SLLRS-NDTAGLQICVKDGTWVDVPPDHSSFFVLVGDTLQVMTNGRFKSVK 258 (335)
T ss_pred EEEEe-CCCCceEEEeCCCCEEEccCCCCcEEEEhHHHHHHHhCCeeeccc
Confidence 99999 789999998 58999999999999999999999999999999985
No 23
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=6.2e-52 Score=342.80 Aligned_cols=189 Identities=24% Similarity=0.462 Sum_probs=156.4
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCC---CCcccccccccc---c----cccccCCcccccccccCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRP---GDIEGFGQLFIA---S----EEQKLDWGYGFTIFTLPIHS 70 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~---~~~~GY~~~~~~---~----~~~~~d~~e~~~~~~~p~~~ 70 (195)
|+||||+.++++++++.++ +||+||.|+|+++.... +...||...... . .....||+|.|.+...+..
T Consensus 64 v~nHGI~~~li~~~~~~s~-~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~D~kE~f~~~~~~~~- 141 (341)
T PLN02984 64 LENHGIPLTLMSQLKEISE-SLLSLPFESKRELFGVNSPLSYFWGTPALTPSGKALSRGPQESNVNWVEGFNIPLSSLS- 141 (341)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHcCCHHHHhhhcccCCCCccccCcccccccccccccccccCCCCeeeEEeCcCCchh-
Confidence 6899999999999999999 99999999999986211 112233211111 0 1225799999998753321
Q ss_pred CCCCCCC---CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--hhhhhh----------CcCCCCCCCCCcccccc
Q 040640 71 RRPHLFP---KLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMD--PNEMKE----------MNYDPPCQQPEQVIGLN 135 (195)
Q Consensus 71 ~~~~~wP---~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~--~~~~~~----------~~~yp~~~~~~~~~g~~ 135 (195)
..+.|| ..+++||+++++|+++|.+|+.+|+++||++||++ +++|.+ ++|||||+.++..+|++
T Consensus 142 -~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ll~~lA~~Lgl~~~~~~f~~~~~~~~~~lRl~~YPp~~~~~~~~g~~ 220 (341)
T PLN02984 142 -LLQTLSCSDPKLESFRVLMEEYGKHLTRIAVTLFEAIAKTLSLELSGDQKMSYLSESTGVIRVYRYPQCSNEAEAPGME 220 (341)
T ss_pred -hhhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHHHhcCccceEEEEeCCCCCCcccccCcc
Confidence 111232 23578999999999999999999999999999999 888765 99999999887889999
Q ss_pred cccCCCceEEEEecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 136 SHSDASALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 136 ~HtD~~~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+|||+|+||||+| ++++||||+++|+|++|+|+||++|||+||+||+||||+||||+
T Consensus 221 aHTD~g~lTlL~Q-d~v~GLQV~~~g~Wv~V~p~pgalVVNiGD~Le~wTNg~~kSt~ 277 (341)
T PLN02984 221 VHTDSSVISILNQ-DEVGGLEVMKDGEWFNVKPIANTLVVNLGDMMQVISDDEYKSVL 277 (341)
T ss_pred CccCCCceEEEEe-CCCCCeeEeeCCceEECCCCCCeEEEECChhhhhhcCCeeeCCC
Confidence 9999999999999 78999999999999999999999999999999999999999985
No 24
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=1.7e-51 Score=329.22 Aligned_cols=177 Identities=33% Similarity=0.638 Sum_probs=156.3
Q ss_pred HHHHhhhhcC-CCHHHHcccccCCC--Ccccccccccc--ccccccCCcccccccccCCCCCCCCCCCCCCcchHHHHHH
Q 040640 15 RAETQKDFFD-LPIEEKNKYWHRPG--DIEGFGQLFIA--SEEQKLDWGYGFTIFTLPIHSRRPHLFPKLPLPFRDTLEV 89 (195)
Q Consensus 15 ~~~~~~~fF~-lp~e~K~~~~~~~~--~~~GY~~~~~~--~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~~~f~~~~~~ 89 (195)
.+.++ +||+ ||.|+|+++....+ ..+||+..... ...+..||+|+|.+...|.....+|.||+.++.||+.+++
T Consensus 2 ~~~~~-~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~~~p~~~~~~n~wP~~~~~f~~~~~~ 80 (262)
T PLN03001 2 RSLGL-SFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHHTFPLSRRNPSHWPDFPPDYREVVGE 80 (262)
T ss_pred hHHHH-HHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEeeecCccccchhhCCCCcHHHHHHHHH
Confidence 56788 9997 99999999987542 47899654332 1234579999999865554445689999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCChhhhhh----------CcCCCCCCCCCcccccccccCCCceEEEEecCCCCceeeee
Q 040640 90 YLTEVKNLTLKMLDQMEKALRMDPNEMKE----------MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKK 159 (195)
Q Consensus 90 y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~----------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~~~~~GLqV~~ 159 (195)
|+++|.+|+.+|+++|+++||+++++|.+ ++|||||+.++..+|+++|||+|+||||+| ++++||||++
T Consensus 81 y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lrl~~YP~~~~~~~~~g~~~HtD~g~lTlL~q-d~v~GLqV~~ 159 (262)
T PLN03001 81 YGDCMKALAQKLLAFISESLGLPCSCIEDAVGDFYQNITVSYYPPCPQPELTLGLQSHSDFGAITLLIQ-DDVEGLQLLK 159 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcCcchhheeecCCCCCCcccccCCcCCcCCCeeEEEEe-CCCCceEEee
Confidence 99999999999999999999999998866 999999998888999999999999999999 7899999999
Q ss_pred CCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 160 DGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 160 ~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+|+|++|+|+||++||||||+|++||||+|||++
T Consensus 160 ~g~Wi~V~p~p~a~vVNiGD~l~~~tng~~~S~~ 193 (262)
T PLN03001 160 DAEWLMVPPISDAILIIIADQTEIITNGNYKSAQ 193 (262)
T ss_pred CCeEEECCCCCCcEEEEccHHHHHHhCCcccccc
Confidence 9999999999999999999999999999999985
No 25
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=100.00 E-value=1e-50 Score=331.25 Aligned_cols=185 Identities=23% Similarity=0.320 Sum_probs=156.6
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCC---
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFP--- 77 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP--- 77 (195)
|+||||+.++++++++.++ +||+||.|+|+++... ...+||.+.+. ..+++|.+.+...... ...+.||
T Consensus 33 l~nHGi~~~l~~~~~~~~~-~FF~LP~e~K~~~~~~-~~~~GY~~~~~-----~~~~~e~~~~~~~~~~-~~~~~~~~~~ 104 (300)
T PLN02365 33 VVNHGVSLSLMAEMKKVVR-SLFDLPDEVKRRNTDV-ILGSGYMAPSE-----VNPLYEALGLYDMASP-QAVDTFCSQL 104 (300)
T ss_pred EEcCCCCHHHHHHHHHHHH-HHHcCCHHHHhhccCC-CCCCCCCCcCC-----CCCchhheecccccCc-hhhhhccccC
Confidence 6899999999999999999 9999999999997542 34579976432 2367888876521111 1123344
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCC-Chhhhhh------CcCCCCCCCCCcccccccccCCCceEEEEecC
Q 040640 78 KLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRM-DPNEMKE------MNYDPPCQQPEQVIGLNSHSDASALTILLQIN 150 (195)
Q Consensus 78 ~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl-~~~~~~~------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~~ 150 (195)
..+++||+.+++|+++|.+++.+|+++||++||+ ++++|.+ ++|||+|+.++..+|+++|||+|+||||+|++
T Consensus 105 ~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~~f~~~~~~lr~~~YP~~p~~~~~~g~~~HtD~g~lTlL~qd~ 184 (300)
T PLN02365 105 DASPHQRETIKKYAKAIHDLAMDLARKLAESLGLVEGDFFQGWPSQFRINKYNFTPETVGSSGVQIHTDSGFLTILQDDE 184 (300)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHhhcccceeeeecCCCCCccccccccCccCCCceEEEecCC
Confidence 2357899999999999999999999999999999 8888875 99999999888889999999999999999932
Q ss_pred CCCceeeee--CCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 151 EMDGLQIKK--DGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 151 ~~~GLqV~~--~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
.++||||++ +|+|++|+|+||++|||+||+||+||||+||||+
T Consensus 185 ~~~GLqV~~~~~g~Wi~V~p~pga~vVNiGD~l~~~TNG~~~St~ 229 (300)
T PLN02365 185 NVGGLEVMDPSSGEFVPVDPLPGTLLVNLGDVATAWSNGRLCNVK 229 (300)
T ss_pred CcCceEEEECCCCeEEecCCCCCeEEEEhhHHHHHHhCCceeccc
Confidence 589999986 6899999999999999999999999999999985
No 26
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=100.00 E-value=7.4e-51 Score=331.72 Aligned_cols=184 Identities=28% Similarity=0.512 Sum_probs=157.4
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccccccccccccCCcccccccccCCCCCCCCCCCCCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQKLDWGYGFTIFTLPIHSRRPHLFPKLP 80 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~~~d~~e~~~~~~~p~~~~~~~~wP~~~ 80 (195)
|+||||++++++++++.++ +||+||.|+|. +.... ..++... ......||+|.|.++..|. ...|.||+.+
T Consensus 35 v~nHGI~~~l~~~~~~~~~-~FF~LP~e~k~-~~~~~--~~~~~~~---~~~~~~d~kE~~~~~~~p~--~~~~~wP~~~ 105 (303)
T PLN02403 35 VENHGIDKKLMEKVKQLVN-SHYEENLKESF-YESEI--AKALDNE---GKTSDVDWESSFFIWHRPT--SNINEIPNLS 105 (303)
T ss_pred EECCCCCHHHHHHHHHHHH-HHhcCCHHHHh-hcccc--cCccccc---CCCCCccHhhhcccccCCc--cchhhCCCCc
Confidence 6899999999999999999 99999999996 22111 1122111 1123569999999876553 2568899888
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh-------------CcCCCCCCCCCcccccccccCCCceEEEE
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE-------------MNYDPPCQQPEQVIGLNSHSDASALTILL 147 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~-------------~~~yp~~~~~~~~~g~~~HtD~~~lTlL~ 147 (195)
++||+.+++|+++|.+++.+|+++++++||+++++|.+ ++|||+|+.++..+|+++|||+|+||||+
T Consensus 106 p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP~~~~~~~~~G~~~HtD~g~lTlL~ 185 (303)
T PLN02403 106 EDLRKTMDEYIAQLIKLAEKLSELMSENLGLDKDYIKEAFSGNKGPSVGTKVAKYPECPRPELVRGLREHTDAGGIILLL 185 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccCCCccceeeeEcCCCCCCcccccCccCccCCCeEEEEE
Confidence 99999999999999999999999999999999887744 89999999887778999999999999999
Q ss_pred ecCCCCceeeeeCCeeEEeecCC-CcEEEEhhhHHHHHhCCceeeee
Q 040640 148 QINEMDGLQIKKDGNWVLVKLLP-DAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 148 q~~~~~GLqV~~~g~W~~v~p~~-g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
|++.++||||.++|+|++|+|+| |++|||+||+||+||||+|||++
T Consensus 186 q~~~v~GLqV~~~g~Wi~V~p~p~~~lvVNvGD~L~~~Tng~~~S~~ 232 (303)
T PLN02403 186 QDDQVPGLEFLKDGKWVPIPPSKNNTIFVNTGDQLEVLSNGRYKSTL 232 (303)
T ss_pred ecCCCCceEeccCCeEEECCCCCCCEEEEEehHHHHHHhCCeeeccc
Confidence 94359999999999999999999 69999999999999999999985
No 27
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.75 E-value=1.2e-18 Score=119.77 Aligned_cols=71 Identities=42% Similarity=0.767 Sum_probs=57.3
Q ss_pred CcCCCCCCCCCcccccccccCC--CceEEEEecCCCCceeeeeCCeeEEeecCCCcEEEEhhhHHHHHhCCceeeee
Q 040640 119 MNYDPPCQQPEQVIGLNSHSDA--SALTILLQINEMDGLQIKKDGNWVLVKLLPDAFIINVGDVLDVALITFYCLCF 193 (195)
Q Consensus 119 ~~~yp~~~~~~~~~g~~~HtD~--~~lTlL~q~~~~~GLqV~~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~~~s~~ 193 (195)
+++||+ ++...++++|+|. +++|+|+| +.++||||...++|+.|++.++.++||+||+|++||||.++|+.
T Consensus 6 ~~~Y~~---~~~~~~~~~H~D~~~~~~Til~~-~~~~gL~~~~~~~~~~v~~~~~~~~v~~G~~l~~~t~g~~~~~~ 78 (98)
T PF03171_consen 6 LNRYPP---PENGVGIGPHTDDEDGLLTILFQ-DEVGGLQVRDDGEWVDVPPPPGGFIVNFGDALEILTNGRYPATL 78 (98)
T ss_dssp EEEE-S---CCGCEEEEEEEES--SSEEEEEE-TSTS-EEEEETTEEEE----TTCEEEEEBHHHHHHTTTSS----
T ss_pred EEECCC---cccCCceeCCCcCCCCeEEEEec-ccchheeccccccccCccCccceeeeeceeeeecccCCccCCce
Confidence 578998 5566899999999 99999999 88999999999999999999999999999999999999999874
No 28
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.63 E-value=1.8e-16 Score=112.22 Aligned_cols=77 Identities=34% Similarity=0.596 Sum_probs=63.4
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCcccccccccccccc-ccCCccccccccc-CCC------CCC
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQLFIASEEQ-KLDWGYGFTIFTL-PIH------SRR 72 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~~~~~~~~-~~d~~e~~~~~~~-p~~------~~~ 72 (195)
|+||||+.+++++++++++ +||+||.|+|+++... +.++||.+.+.+.... ..||+|+|.++.. +.. ...
T Consensus 32 l~nhGi~~~l~~~~~~~~~-~fF~lp~e~K~~~~~~-~~~~Gy~~~~~~~~~~~~~d~~E~~~~~~~~~~~~p~~~~~~~ 109 (116)
T PF14226_consen 32 LVNHGIPQELIDRVFAAAR-EFFALPLEEKQKYARS-PSYRGYSPPGSESTDGGKPDWKESFNIGPDLPEDDPAYPPLYG 109 (116)
T ss_dssp EESSSSSHHHHHHHHHHHH-HHHCSHHHHHHHHBCC-TTCSEEEESEEECCTTCCCCSEEEEEEECC-STTCHHTGCTS-
T ss_pred EecccccchhhHHHHHHHH-HHHHhhHHHHHHhcCC-CCCcccccCCccccCCCCCCceEEeEEECCCCccccccccccC
Confidence 6899999999999999999 9999999999999553 5789999877665554 8999999999876 322 368
Q ss_pred CCCCCCC
Q 040640 73 PHLFPKL 79 (195)
Q Consensus 73 ~~~wP~~ 79 (195)
+|.||++
T Consensus 110 ~n~WP~~ 116 (116)
T PF14226_consen 110 PNIWPDE 116 (116)
T ss_dssp GGGS-TT
T ss_pred CCCCCCC
Confidence 8999964
No 29
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=98.92 E-value=9e-10 Score=78.33 Aligned_cols=45 Identities=38% Similarity=0.600 Sum_probs=40.3
Q ss_pred CccCCCCHHHHHHHHHHHhhhhcCCCHHHHcccccCCCCccccccc
Q 040640 1 LVNHGVSSSLVEKMRAETQKDFFDLPIEEKNKYWHRPGDIEGFGQL 46 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~~~~~~fF~lp~e~K~~~~~~~~~~~GY~~~ 46 (195)
|+||||+.++++++++.++ +||+||.|+|+++...++...||+..
T Consensus 72 l~nhGi~~elid~~~~~~~-~FF~LP~e~K~k~~~~~~~~~gy~~~ 116 (120)
T PLN03176 72 IVDHGVDAKLVSEMTTLAK-EFFALPPEEKLRFDMSGGKKGGFIVS 116 (120)
T ss_pred EECCCCCHHHHHHHHHHHH-HHHCCCHHHHHhcccCCCccCCcchh
Confidence 6899999999999999999 99999999999998866667799643
No 30
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=86.71 E-value=3.9 Score=30.51 Aligned_cols=75 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHcCCCh---hhhhh--CcCCCCCCCCCcccccccccCCC--------ceEEEEecC--CCCc-eeeeeC
Q 040640 97 LTLKMLDQMEKALRMDP---NEMKE--MNYDPPCQQPEQVIGLNSHSDAS--------ALTILLQIN--EMDG-LQIKKD 160 (195)
Q Consensus 97 l~~~ll~~l~~~Lgl~~---~~~~~--~~~yp~~~~~~~~~g~~~HtD~~--------~lTlL~q~~--~~~G-LqV~~~ 160 (195)
+...|.+.++..++++. ..... +.+|.+. -...+|.|.. .+|+++.-+ ..|| |.+...
T Consensus 60 ~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~Y~~g------~~~~~H~D~~~~~~~~~r~~T~~~yLn~~~~GG~~~f~~~ 133 (178)
T smart00702 60 VIERIRQRLADFLGLLRGLPLSAEDAQVARYGPG------GHYGPHVDNFEDDENGDRIATFLLYLNDVEEGGELVFPGL 133 (178)
T ss_pred HHHHHHHHHHHHHCCCchhhccCcceEEEEECCC------CcccCcCCCCCCCCCCCeEEEEEEEeccCCcCceEEecCC
Confidence 44445555666666652 22222 7777762 2367898866 578777632 2344 666654
Q ss_pred C--eeEEeecCCCcEEEEh
Q 040640 161 G--NWVLVKLLPDAFIINV 177 (195)
Q Consensus 161 g--~W~~v~p~~g~~vVnv 177 (195)
+ .-..|.|..|.+|+.-
T Consensus 134 ~~~~~~~v~P~~G~~v~f~ 152 (178)
T smart00702 134 GLMVCATVKPKKGDLLFFP 152 (178)
T ss_pred CCccceEEeCCCCcEEEEe
Confidence 3 2568999999888865
No 31
>TIGR00568 alkb DNA alkylation damage repair protein AlkB. Proteins in this family have an as of yet undetermined function in the repair of alkylation damage to DNA. Alignment and family designation based on phylogenomic analysis of Jonathan A. Eisen (PhD Thesis, Stanford University, 1999).
Probab=81.84 E-value=6.7 Score=29.47 Aligned_cols=69 Identities=17% Similarity=0.153 Sum_probs=40.4
Q ss_pred HHHcCCChhhhhh--CcCCCCCCCCCcccccccccCCCceE---EEEe-cCCCCc-eeee---eCCeeEEeecCCCcEEE
Q 040640 106 EKALRMDPNEMKE--MNYDPPCQQPEQVIGLNSHSDASALT---ILLQ-INEMDG-LQIK---KDGNWVLVKLLPDAFII 175 (195)
Q Consensus 106 ~~~Lgl~~~~~~~--~~~yp~~~~~~~~~g~~~HtD~~~lT---lL~q-~~~~~G-LqV~---~~g~W~~v~p~~g~~vV 175 (195)
+...|.+...|+. +|+|++- =+++.|.|-.-+. .+.. +=+... +.+. +++....+.-.+|.++|
T Consensus 84 ~~~~g~~~~~~n~~LvN~Y~~G------d~mg~H~D~~e~~~~~pI~SvSLG~~r~F~~~~~~~~~~~~~l~L~sGsllv 157 (169)
T TIGR00568 84 ATAAGFPDFQPDACLVNRYAPG------ATLSLHQDRDEPDLRAPLLSVSLGLPAIFLIGGLKRNDPPKRLRLHSGDVVI 157 (169)
T ss_pred HHHhCCCCCCCCEEEEEeecCC------CccccccccccccCCCCEEEEeCCCCEEEEecCCcCCCceEEEEeCCCCEEE
Confidence 3444655445555 9999873 2689999953221 0110 001111 2222 14557889999999999
Q ss_pred EhhhH
Q 040640 176 NVGDV 180 (195)
Q Consensus 176 nvGd~ 180 (195)
+-|+.
T Consensus 158 M~G~s 162 (169)
T TIGR00568 158 MGGES 162 (169)
T ss_pred ECCch
Confidence 99974
No 32
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=79.86 E-value=12 Score=29.20 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=38.1
Q ss_pred CcCCCCCCCCCcccccccccCCC-----ceEEEEecCCCCceeee---eCCeeEEeecCCCcEEEEhhhHHHHHhCCc
Q 040640 119 MNYDPPCQQPEQVIGLNSHSDAS-----ALTILLQINEMDGLQIK---KDGNWVLVKLLPDAFIINVGDVLDVALITF 188 (195)
Q Consensus 119 ~~~yp~~~~~~~~~g~~~HtD~~-----~lTlL~q~~~~~GLqV~---~~g~W~~v~p~~g~~vVnvGd~l~~~TnG~ 188 (195)
+|+|.+ +. +++.|.|-. ..-+-+.-....=+++. +.+.+..+.-.+|.++|+-|++ +.|=.|.
T Consensus 120 vN~Y~~-----G~-~mg~H~D~~E~~~~~pI~SvSLG~~~~F~~~~~~~~~~~~~l~L~~Gdllvm~G~s-r~~~HgV 190 (213)
T PRK15401 120 INRYAP-----GA-KLSLHQDKDERDFRAPIVSVSLGLPAVFQFGGLKRSDPLQRILLEHGDVVVWGGPS-RLRYHGI 190 (213)
T ss_pred EEeccC-----cC-ccccccCCCcccCCCCEEEEeCCCCeEEEecccCCCCceEEEEeCCCCEEEECchH-hheeccC
Confidence 899987 33 789999842 11111110111123332 2456889999999999999996 5544443
No 33
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=77.37 E-value=6.5 Score=29.59 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=36.5
Q ss_pred CcCCCCCCCCCcccccccccCCCce-------EEEEecCCCCceeeee---CCeeEEeecCCCcEEEEhhhHHHHHhCCc
Q 040640 119 MNYDPPCQQPEQVIGLNSHSDASAL-------TILLQINEMDGLQIKK---DGNWVLVKLLPDAFIINVGDVLDVALITF 188 (195)
Q Consensus 119 ~~~yp~~~~~~~~~g~~~HtD~~~l-------TlL~q~~~~~GLqV~~---~g~W~~v~p~~g~~vVnvGd~l~~~TnG~ 188 (195)
+|+|++ +. ++++|.|-..+ ||-+- ...-+.+.. .+..+.+...+|.++|+-|++=..| .+.
T Consensus 101 iN~Y~~-----g~-~i~~H~D~~~~~~~~~I~slSLG--~~~~~~f~~~~~~~~~~~~~L~~gsl~vm~g~~r~~~-H~I 171 (194)
T PF13532_consen 101 INYYRD-----GS-GIGPHSDDEEYGFGPPIASLSLG--SSRVFRFRNKSDDDEPIEVPLPPGSLLVMSGEARYDW-HGI 171 (194)
T ss_dssp EEEESS-----TT--EEEE---TTC-CCSEEEEEEEE--S-EEEEEEECGGTS-EEEEEE-TTEEEEEETTHHHHE-EEE
T ss_pred EEecCC-----CC-CcCCCCCcccccCCCcEEEEEEc--cCceEEEeeccCCCccEEEEcCCCCEEEeChHHhhhe-eEc
Confidence 789987 44 79999987633 22221 112244443 4688999999999999999997776 543
No 34
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A ....
Probab=68.14 E-value=8 Score=25.68 Aligned_cols=46 Identities=24% Similarity=0.251 Sum_probs=30.8
Q ss_pred ccccccCC-----CceEEEEecC-C-----CCceeeee----CCeeEEee-----cCCCcEEEEhh
Q 040640 133 GLNSHSDA-----SALTILLQIN-E-----MDGLQIKK----DGNWVLVK-----LLPDAFIINVG 178 (195)
Q Consensus 133 g~~~HtD~-----~~lTlL~q~~-~-----~~GLqV~~----~g~W~~v~-----p~~g~~vVnvG 178 (195)
.+.+|+|. ..+|+|+.-+ . .+.|++.. ++....++ |.+|.+|+.-+
T Consensus 11 ~~~~H~D~~~~~~~~~t~llyL~~~~~~~~GG~l~~~~~~~~~~~~~~~~~~~~~p~~g~~v~F~~ 76 (100)
T PF13640_consen 11 FFGPHTDNSYDPHRRVTLLLYLNDPEWEFEGGELEFYPSKDSDDVSREVEDFDIVPKPGRLVIFPS 76 (100)
T ss_dssp EEEEEESSSCCCSEEEEEEEESS-CS-HCEE--EEETTTS-TSSTCEEEGGGSEE-BTTEEEEEES
T ss_pred EEeeeECCCCCCcceEEEEEEECCCCcccCCCEEEEeccccCCCcceEEEeccccCCCCEEEEEeC
Confidence 47899998 5888886533 2 24588874 34555666 99999998876
No 35
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=51.19 E-value=82 Score=26.14 Aligned_cols=75 Identities=11% Similarity=0.103 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCChhhhhh--CcCCCCCCCCCcccccccccCCC------------ceEEEEecC--CCCceeeee
Q 040640 96 NLTLKMLDQMEKALRMDPNEMKE--MNYDPPCQQPEQVIGLNSHSDAS------------ALTILLQIN--EMDGLQIKK 159 (195)
Q Consensus 96 ~l~~~ll~~l~~~Lgl~~~~~~~--~~~yp~~~~~~~~~g~~~HtD~~------------~lTlL~q~~--~~~GLqV~~ 159 (195)
.+..+|.+-|+...++|.+..+. +.+|-+.. -..+|.|+- +.|+|+-.+ ..+|=-+..
T Consensus 111 pvv~~I~~Ria~~t~lp~~~~E~lQVlrY~~Gq------~Y~~H~D~~~~~~~~~~gg~R~aTvL~YLndv~~GGeT~FP 184 (310)
T PLN00052 111 PVVSRIEERIAAWTFLPEENAENIQILRYEHGQ------KYEPHFDYFHDKINQALGGHRYATVLMYLSTVDKGGETVFP 184 (310)
T ss_pred HHHHHHHHHHHHHhCCCcccCcceEEEecCCCC------CCCCCCCccccccccccCCceeEEEEEEeccCCCCCceecC
Confidence 34455555556666788766655 66665422 146677742 567776632 234423322
Q ss_pred CCe-----------------eEEeecCCCcEEEE
Q 040640 160 DGN-----------------WVLVKLLPDAFIIN 176 (195)
Q Consensus 160 ~g~-----------------W~~v~p~~g~~vVn 176 (195)
..+ =+.|+|..|..|+.
T Consensus 185 ~~~~~~~~~~~~~~s~c~~~gl~VkPkkG~ALlF 218 (310)
T PLN00052 185 NAEGWENQPKDDTFSECAHKGLAVKPVKGDAVLF 218 (310)
T ss_pred CcccccccccccchhhhhcCCeEeccCcceEEEE
Confidence 111 17788999877763
No 36
>PF06820 Phage_fiber_C: Putative prophage tail fibre C-terminus; InterPro: IPR009640 This entry represents the C terminus of phage 933W tail fibre protein. This domain is found together with conserved RLGP motif. The characteristics of the protein distribution suggest prophage matches.
Probab=47.80 E-value=15 Score=22.39 Aligned_cols=37 Identities=30% Similarity=0.423 Sum_probs=23.2
Q ss_pred ccccccccCCC---ceEEEEecC------CCCceeeee-CCeeEEee
Q 040640 131 VIGLNSHSDAS---ALTILLQIN------EMDGLQIKK-DGNWVLVK 167 (195)
Q Consensus 131 ~~g~~~HtD~~---~lTlL~q~~------~~~GLqV~~-~g~W~~v~ 167 (195)
.-|.-|-||-. -||+|-..+ -..-|||+. ||.|.+|+
T Consensus 15 snG~~P~tdg~liT~ltfL~pkd~~~vq~~f~~LQv~fgDGpWqdik 61 (64)
T PF06820_consen 15 SNGWFPETDGRLITGLTFLDPKDATRVQGVFRHLQVRFGDGPWQDIK 61 (64)
T ss_pred CCccccCCCcceEeeeEEecccCchhheeeeeeeEEEeccCChhhcc
Confidence 35667777744 455552211 135589986 89999886
No 37
>COG2140 Thermophilic glucose-6-phosphate isomerase and related metalloenzymes [Carbohydrate transport and metabolism / General function prediction only]
Probab=44.97 E-value=65 Score=25.14 Aligned_cols=55 Identities=24% Similarity=0.375 Sum_probs=34.0
Q ss_pred CcCCCCCCCCCcccccccccCCCceEEEEecCCCCceeeee--CCeeEEeecCCCcEEEEhhh
Q 040640 119 MNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKK--DGNWVLVKLLPDAFIINVGD 179 (195)
Q Consensus 119 ~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~~~~~GLqV~~--~g~W~~v~p~~g~~vVnvGd 179 (195)
+.+.|+.++++-...+.-+ =..+.| +..+-..+.. .|.=+.|||-=|+.++|+||
T Consensus 95 ~H~Hp~ade~E~y~vi~G~-----g~m~v~-~~~G~~~v~~~~~Gd~iyVPp~~gH~t~N~Gd 151 (209)
T COG2140 95 LHYHPNADEPEIYYVLKGE-----GRMLVQ-KPEGEARVIAVRAGDVIYVPPGYGHYTINTGD 151 (209)
T ss_pred cccCCCCCcccEEEEEecc-----EEEEEE-cCCCcEEEEEecCCcEEEeCCCcceEeecCCC
Confidence 4444444444433444322 234445 3335566554 68889999999999999998
No 38
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=43.91 E-value=25 Score=22.92 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhhhcCCCHHHHcc
Q 040640 8 SSLVEKMRAETQKDFFDLPIEEKNK 32 (195)
Q Consensus 8 ~~~~~~~~~~~~~~fF~lp~e~K~~ 32 (195)
.++++++...-. .|.+||.|+|..
T Consensus 20 sEVL~~~k~N~D-~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYD-AFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHH-HHHcCChhhHHH
Confidence 457788888888 999999999954
No 39
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=41.85 E-value=1.4e+02 Score=23.64 Aligned_cols=29 Identities=24% Similarity=0.243 Sum_probs=20.5
Q ss_pred CCceeeee-CCeeEEeecCCCcEEEEhhhHH
Q 040640 152 MDGLQIKK-DGNWVLVKLLPDAFIINVGDVL 181 (195)
Q Consensus 152 ~~GLqV~~-~g~W~~v~p~~g~~vVnvGd~l 181 (195)
.|.|.+.. .|. ..|+|..|.+||.-...+
T Consensus 129 GGEl~~~~~~g~-~~Vkp~aG~~vlfps~~l 158 (226)
T PRK05467 129 GGELVIEDTYGE-HRVKLPAGDLVLYPSTSL 158 (226)
T ss_pred CCceEEecCCCc-EEEecCCCeEEEECCCCc
Confidence 34488775 343 578999999998876544
No 40
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=38.59 E-value=50 Score=19.59 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
++-.+++..|..++++.||.|++..
T Consensus 14 e~K~~l~~~it~~~~~~lg~~~~~i 38 (60)
T PF01361_consen 14 EQKRELAEAITDAVVEVLGIPPERI 38 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHTS-GGGE
T ss_pred HHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 4566888889999999999987654
No 41
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=36.10 E-value=57 Score=19.70 Aligned_cols=33 Identities=18% Similarity=0.353 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhhh-CcCCCC
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEMKE-MNYDPP 124 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~~~-~~~yp~ 124 (195)
+.-+++...|.+++++.||.|++...- +..+|+
T Consensus 15 eqk~~l~~~it~~l~~~lg~p~~~v~V~i~e~~~ 48 (64)
T PRK01964 15 EKIKNLIREVTEAISATLDVPKERVRVIVNEVPS 48 (64)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhEEEEEEEcCh
Confidence 455688888999999999999765433 444443
No 42
>PF11876 DUF3396: Protein of unknown function (DUF3396); InterPro: IPR021815 This family of proteins are functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 302 to 382 amino acids in length.
Probab=34.51 E-value=13 Score=28.92 Aligned_cols=43 Identities=19% Similarity=0.371 Sum_probs=33.9
Q ss_pred cCCCceEEEEec--CCCCceeeee---CCeeEEeecCCCcEEEEhhhH
Q 040640 138 SDASALTILLQI--NEMDGLQIKK---DGNWVLVKLLPDAFIINVGDV 180 (195)
Q Consensus 138 tD~~~lTlL~q~--~~~~GLqV~~---~g~W~~v~p~~g~~vVnvGd~ 180 (195)
...+.+|+|-+. +..+|.+..+ ++.|+.+.+..+.+||.+|+.
T Consensus 105 k~v~WlT~Lg~~~l~~LGG~~~lr~~L~~~~~~i~~~~~g~vI~aG~~ 152 (208)
T PF11876_consen 105 KGVNWLTFLGDPLLEKLGGEDALRSALPGPWIRIHPYGGGVVIQAGEW 152 (208)
T ss_pred CCcchhheeCHHHHHhhccHHHHHhhCCCCceEEEECCCcEEEEeCCC
Confidence 456789999763 3577877543 689999999999999999974
No 43
>smart00153 VHP Villin headpiece domain.
Probab=34.50 E-value=24 Score=19.23 Aligned_cols=25 Identities=24% Similarity=0.478 Sum_probs=18.9
Q ss_pred CCHHHHHHHHHHHhhhhcCCCHHHH
Q 040640 6 VSSSLVEKMRAETQKDFFDLPIEEK 30 (195)
Q Consensus 6 v~~~~~~~~~~~~~~~fF~lp~e~K 30 (195)
++.+..++++..++.+|..||.=.+
T Consensus 2 LsdeeF~~vfgmsr~eF~~LP~WKq 26 (36)
T smart00153 2 LSDEDFEEVFGMTREEFYKLPLWKQ 26 (36)
T ss_pred CCHHHHHHHHCCCHHHHHhCcHhhH
Confidence 4677888889888867888987443
No 44
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=34.39 E-value=29 Score=17.88 Aligned_cols=16 Identities=31% Similarity=0.383 Sum_probs=11.5
Q ss_pred CccCCCCHHHHHHHHH
Q 040640 1 LVNHGVSSSLVEKMRA 16 (195)
Q Consensus 1 l~nHGv~~~~~~~~~~ 16 (195)
|..||++++.+..-++
T Consensus 11 V~eh~ls~ee~~~RL~ 26 (28)
T PF12368_consen 11 VKEHGLSEEEVAERLA 26 (28)
T ss_pred HHhcCCCHHHHHHHHH
Confidence 4579999988776543
No 45
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=34.12 E-value=65 Score=19.09 Aligned_cols=25 Identities=12% Similarity=0.183 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
++-++++..|.+.+++.+|.|++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (61)
T PRK02220 15 EQLKALVKDVTAAVSKNTGAPAEHI 39 (61)
T ss_pred HHHHHHHHHHHHHHHHHhCcChhhE
Confidence 4556888899999999999987543
No 46
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=33.10 E-value=43 Score=20.10 Aligned_cols=16 Identities=31% Similarity=0.673 Sum_probs=12.2
Q ss_pred eeeeeCCeeEEeecCC
Q 040640 155 LQIKKDGNWVLVKLLP 170 (195)
Q Consensus 155 LqV~~~g~W~~v~p~~ 170 (195)
+||..+++|+.+.|.+
T Consensus 53 ~ev~~~~~W~~~D~~~ 68 (68)
T smart00460 53 AEVYLEGGWVPVDPTP 68 (68)
T ss_pred EEEEECCCeEEEeCCC
Confidence 5666678999988764
No 47
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=33.01 E-value=58 Score=19.51 Aligned_cols=24 Identities=4% Similarity=0.136 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNE 115 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~ 115 (195)
++-++|+..|.+++++.+|.|++.
T Consensus 15 EqK~~L~~~it~a~~~~~~~p~~~ 38 (60)
T PRK02289 15 EQKNALAREVTEVVSRIAKAPKEA 38 (60)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcce
Confidence 455688889999999999998654
No 48
>PF06560 GPI: Glucose-6-phosphate isomerase (GPI); InterPro: IPR010551 This entry consists of several bacterial and archaeal glucose-6-phosphate isomerase (GPI) proteins (5.3.1.9 from EC), which are involved in glycolysis and in gluconeogenesis and catalyse the conversion of D-glucose 6-phosphate to D-fructose 6-phosphate. The deduced amino acid sequence of the first archaeal PGI isolated from Pyrococcus furiosus revealed that it is not related to its eukaryotic and many of its bacterial counterparts. In contrast, this archaeal PGI shares similarity with the cupin superfamily that consists of a variety of proteins that are generally involved in sugar metabolism in both prokaryotes and eukaryotes [].; GO: 0004347 glucose-6-phosphate isomerase activity, 0006094 gluconeogenesis, 0006096 glycolysis, 0005737 cytoplasm; PDB: 1J3Q_B 1J3R_B 1J3P_A 2GC0_A 1X8E_A 1X82_A 1QY4_B 2GC2_B 1QXJ_A 1QXR_B ....
Probab=32.90 E-value=57 Score=24.85 Aligned_cols=36 Identities=33% Similarity=0.302 Sum_probs=21.5
Q ss_pred eEEEEecCCCCceee-----e--eCCeeEEeecCCCcEEEEhhhH
Q 040640 143 LTILLQINEMDGLQI-----K--KDGNWVLVKLLPDAFIINVGDV 180 (195)
Q Consensus 143 lTlL~q~~~~~GLqV-----~--~~g~W~~v~p~~g~~vVnvGd~ 180 (195)
=.+|+| + ..|.+| . ..|+-+.|||-=++.+||+||-
T Consensus 94 g~~lLq-~-~~~~~~~~~~~v~~~~G~~v~IPp~yaH~tIN~g~~ 136 (182)
T PF06560_consen 94 GLILLQ-K-EEGDDVGDVIAVEAKPGDVVYIPPGYAHRTINTGDE 136 (182)
T ss_dssp EEEEEE---TTS-----EEEEEE-TTEEEEE-TT-EEEEEE-SSS
T ss_pred EEEEEE-e-cCCCcceeEEEEEeCCCCEEEECCCceEEEEECCCC
Confidence 356777 3 444222 1 3789999999999999999973
No 49
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=32.27 E-value=66 Score=18.71 Aligned_cols=25 Identities=8% Similarity=0.202 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
++-++++..|.+++++.+|.+++.+
T Consensus 14 eqk~~l~~~i~~~l~~~~g~~~~~v 38 (58)
T cd00491 14 EQKRELIERVTEAVSEILGAPEATI 38 (58)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcccE
Confidence 4556888889999999999886543
No 50
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=31.90 E-value=78 Score=18.79 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
++-++|+..|.+++++.+|.|++..
T Consensus 15 eqk~~l~~~it~~l~~~~~~p~~~v 39 (62)
T PRK00745 15 EQKRKLVEEITRVTVETLGCPPESV 39 (62)
T ss_pred HHHHHHHHHHHHHHHHHcCCChhHE
Confidence 4556888899999999999987654
No 51
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=31.40 E-value=70 Score=19.05 Aligned_cols=24 Identities=13% Similarity=0.210 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNE 115 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~ 115 (195)
++-++++..|.++++..||.+++.
T Consensus 15 eqK~~l~~~it~~l~~~lg~~~~~ 38 (63)
T TIGR00013 15 EQKRQLIEGVTEAMAETLGANLES 38 (63)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccc
Confidence 445678888899999999998654
No 52
>PF11548 Receptor_IA-2: Protein-tyrosine phosphatase receptor IA-2; InterPro: IPR021613 IA-2 is a protein-tyrosine phosphatase receptor that upon exocytosis, the cytoplasmic domain is cleaved and moves to the nucleus where it enhances transcription of the insulin gene. The mature exodomain of IA-2 participates in adhesion to the extracellular matrix and is self-proteolyzed in vitro by reactive oxygen species which may be a new shedding mechanism. ; PDB: 2QT7_B 3N01_B 3N4W_B 3NG8_A.
Probab=30.28 E-value=43 Score=22.48 Aligned_cols=22 Identities=5% Similarity=0.273 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHcCCChhhhhh
Q 040640 97 LTLKMLDQMEKALRMDPNEMKE 118 (195)
Q Consensus 97 l~~~ll~~l~~~Lgl~~~~~~~ 118 (195)
=+.+|++.+|+.|+++..+|.+
T Consensus 18 ~G~~l~~~la~~l~l~s~~F~~ 39 (91)
T PF11548_consen 18 EGSRLMEKLAELLHLPSSSFIN 39 (91)
T ss_dssp HHHHHHHHHHHHHTS-GGGEEE
T ss_pred HHHHHHHHHHHHhCCCccccee
Confidence 3678999999999999998875
No 53
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=29.03 E-value=53 Score=19.99 Aligned_cols=33 Identities=0% Similarity=0.089 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHcCCChhhh
Q 040640 84 RDTLEVYLTEVKN----LTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 84 ~~~~~~y~~~~~~----l~~~ll~~l~~~Lgl~~~~~ 116 (195)
...|++++....- ........||..|||++..+
T Consensus 13 ~~~Le~~fe~~~y~~~~~~~~~r~~la~~lgl~~~vv 49 (58)
T TIGR01565 13 KEKMRDFAEKLGWKLKDKRREEVREFCEEIGVTRKVF 49 (58)
T ss_pred HHHHHHHHHHcCCCCCCCCHHHHHHHHHHhCCCHHHe
Confidence 5677777776665 77778889999999987654
No 54
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=28.80 E-value=2.5e+02 Score=20.96 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=34.9
Q ss_pred cccccccCC----CceEEEEecC---CCCceeeeeC----CeeEEeecCCCcEEEEhhhHH
Q 040640 132 IGLNSHSDA----SALTILLQIN---EMDGLQIKKD----GNWVLVKLLPDAFIINVGDVL 181 (195)
Q Consensus 132 ~g~~~HtD~----~~lTlL~q~~---~~~GLqV~~~----g~W~~v~p~~g~~vVnvGd~l 181 (195)
.....|+|. ...|++..-. ..+|+-+... ..=+.|.+.+|++++..|..+
T Consensus 85 r~t~~HrD~~~~~~~~~~~~t~~~gd~~~g~l~lp~~~~~~~g~~~~~~~GtVl~~~~~~~ 145 (171)
T PF12851_consen 85 RCTHSHRDTHNMPNGYDVLCTLGRGDYDGGRLELPGLDPNILGVAFAYQPGTVLIFCAKRE 145 (171)
T ss_pred cCccceecCCCCCCCeEEEEecCCccccCceEeccccccccCCEEEecCCCcEEEEcccce
Confidence 457889999 7788888732 2456555543 123678899999999998743
No 55
>COG1305 Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism]
Probab=28.33 E-value=1.1e+02 Score=24.37 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhCcCCCCCCCCCcccccccccCCCceEEEEecCCCCceeeeeCC-ee
Q 040640 85 DTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKEMNYDPPCQQPEQVIGLNSHSDASALTILLQINEMDGLQIKKDG-NW 163 (195)
Q Consensus 85 ~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~~~~yp~~~~~~~~~g~~~HtD~~~lTlL~q~~~~~GLqV~~~g-~W 163 (195)
..+....-.|...+. ++-++++++|+|.-+..........+..... +..+.+.....||...| .|
T Consensus 188 ~~l~~~~G~C~d~a~-l~val~Ra~GIpAR~V~Gy~~~~~~~~~~~~-------------~~~~~~~Haw~ev~~~~~gW 253 (319)
T COG1305 188 DALRLGRGVCRDFAH-LLVALLRAAGIPARYVSGYLGAEVEPLSGRP-------------LVRNDDAHAWAEVYLPGRGW 253 (319)
T ss_pred HHHHhCCcccccHHH-HHHHHHHHcCCcceeeeccccCCCCcccccc-------------cccCcccceeeeeecCCCcc
Confidence 333333333444333 4557788888887554432222221111110 11221334556666666 59
Q ss_pred EEeecCCCc
Q 040640 164 VLVKLLPDA 172 (195)
Q Consensus 164 ~~v~p~~g~ 172 (195)
+.+.|..+.
T Consensus 254 ~~~Dpt~~~ 262 (319)
T COG1305 254 VPLDPTNGL 262 (319)
T ss_pred EeecCCCCC
Confidence 988887664
No 56
>PRK15331 chaperone protein SicA; Provisional
Probab=26.59 E-value=57 Score=24.46 Aligned_cols=21 Identities=19% Similarity=0.649 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHhhhhcCC
Q 040640 4 HGVSSSLVEKMRAETQKDFFDL 25 (195)
Q Consensus 4 HGv~~~~~~~~~~~~~~~fF~l 25 (195)
|||+++.++.++..+. .||..
T Consensus 30 ~gis~~~le~iY~~Ay-~~y~~ 50 (165)
T PRK15331 30 HGIPQDMMDGLYAHAY-EFYNQ 50 (165)
T ss_pred hCCCHHHHHHHHHHHH-HHHHC
Confidence 8999999999999999 99953
No 57
>PF01381 HTH_3: Helix-turn-helix; InterPro: IPR001387 This is large family of DNA binding helix-turn helix proteins that include a bacterial plasmid copy control protein, bacterial methylases, various bacteriophage transcription control proteins and a vegetative specific protein from Dictyostelium discoideum (Slime mould).; GO: 0043565 sequence-specific DNA binding; PDB: 2AXU_A 2AWI_D 2AXV_D 2AXZ_C 2AW6_A 3KXA_C 3BS3_A 2CRO_A 1ZUG_A 3CRO_R ....
Probab=26.01 E-value=19 Score=20.90 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCChhhh
Q 040640 87 LEVYLTEVKNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 87 ~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
+..|.+.-.......+..|+..||++.++|
T Consensus 26 i~~~~~g~~~~~~~~~~~ia~~l~~~~~~l 55 (55)
T PF01381_consen 26 ISRIENGKRNPSLDTLKKIAKALGVSPEYL 55 (55)
T ss_dssp HHHHHTTSSTSBHHHHHHHHHHHTSEHHHH
T ss_pred hHHHhcCCCCCCHHHHHHHHHHHCCCHHHC
Confidence 333333333444556667777777766554
No 58
>PF14549 P22_Cro: DNA-binding transcriptional regulator Cro; PDB: 1RZS_A 3BD1_A 3QWS_A 2HIN_B.
Probab=25.94 E-value=40 Score=20.66 Aligned_cols=12 Identities=0% Similarity=-0.321 Sum_probs=7.1
Q ss_pred HHHHHhCCceee
Q 040640 180 VLDVALITFYCL 191 (195)
Q Consensus 180 ~l~~~TnG~~~s 191 (195)
.+|.+|||++++
T Consensus 40 ~Ie~~T~G~l~~ 51 (60)
T PF14549_consen 40 QIEKLTNGKLKC 51 (60)
T ss_dssp HHHHHTTTSS--
T ss_pred HHHHHhCCceee
Confidence 567777777765
No 59
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=25.46 E-value=85 Score=21.56 Aligned_cols=24 Identities=4% Similarity=0.216 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNE 115 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~ 115 (195)
+.-++++..|.+.+++.||++++.
T Consensus 72 e~k~~l~~~i~~~l~~~lgi~~~r 95 (116)
T PTZ00397 72 SNNSSIAAAITKILASHLKVKSER 95 (116)
T ss_pred HHHHHHHHHHHHHHHHHhCcCccc
Confidence 345677888899999999999754
No 60
>PF01257 2Fe-2S_thioredx: Thioredoxin-like [2Fe-2S] ferredoxin; InterPro: IPR002023 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. Among the many polypeptide subunits that make up complex I, there is one with a molecular weight of 24 kDa (in mammals), which is a component of the iron-sulphur (IP) fragment of the enzyme. It seems to bind a 2Fe-2S iron-sulphur cluster. The 24 kDa subunit is nuclear encoded, as a precursor form with a transit peptide in mammals and in Neurospora crassa. There is a highly conserved region located in the central section of this subunit that contains two conserved cysteines, that are probably involved in the binding of the 2Fe-2S centre. The 24 kDa subunit is highly similar to [, ]: Subunit E of Escherichia coli NADH-ubiquinone oxidoreductase (gene nuoE) Subunit NQO2 of Paracoccus denitrificans NADH-ubiquinone oxidoreductase ; GO: 0016491 oxidoreductase activity, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 1M2D_A 1M2A_B 1F37_B 1M2B_B 2FUG_B 3M9S_B 3IAM_B 3IAS_K 2YBB_2 3I9V_B ....
Probab=24.36 E-value=60 Score=23.53 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhh
Q 040640 76 FPKLPLPFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNEMKE 118 (195)
Q Consensus 76 wP~~~~~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~~~~ 118 (195)
+|......-+.+.+..+...-+....++.+|+.||++......
T Consensus 8 ~~~~~~~ll~~L~~~Q~~~g~i~~~~~~~iA~~l~i~~~~v~~ 50 (145)
T PF01257_consen 8 YPSKRSALLPILHEVQEEYGYIPEEALEEIAEALGIPPAEVYG 50 (145)
T ss_dssp S--GGGGHHHHHHHHHHHHSS--HHHHHHHHHHHTS-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCCCHHHHHH
Confidence 4544556677888888888889999999999999999887766
No 61
>PF08921 DUF1904: Domain of unknown function (DUF1904); InterPro: IPR015017 This entry represents a family of hypothetical bacterial proteins. ; PDB: 1U9D_B.
Probab=24.29 E-value=1.1e+02 Score=21.17 Aligned_cols=26 Identities=12% Similarity=0.331 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEMK 117 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~~ 117 (195)
+.+..++..|+.-||+..+.|++.|.
T Consensus 12 e~v~~~S~~LideLa~i~~~p~e~ft 37 (108)
T PF08921_consen 12 EQVQELSKELIDELAEICGCPRENFT 37 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHT--GGG-E
T ss_pred HHHHHHhHHHHHHHHHHHCCCcceEE
Confidence 46788999999999999999998775
No 62
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=24.08 E-value=58 Score=18.96 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhh
Q 040640 82 PFRDTLEVYLTEVKNLTLKMLDQMEKALRMDPNE 115 (195)
Q Consensus 82 ~f~~~~~~y~~~~~~l~~~ll~~l~~~Lgl~~~~ 115 (195)
.-...+++++.........-...||..||++...
T Consensus 10 ~q~~~L~~~f~~~~~p~~~~~~~la~~l~l~~~~ 43 (57)
T PF00046_consen 10 EQLKVLEEYFQENPYPSKEEREELAKELGLTERQ 43 (57)
T ss_dssp HHHHHHHHHHHHSSSCHHHHHHHHHHHHTSSHHH
T ss_pred HHHHHHHHHHHHhccccccccccccccccccccc
Confidence 3457888888887788888888999999998653
No 63
>PF08699 DUF1785: Domain of unknown function (DUF1785); InterPro: IPR014811 This region is found in argonaute [] proteins and often co-occurs with IPR003103 from INTERPRO and IPR003165 from INTERPRO. ; PDB: 1R6Z_P 3MJ0_A 4EI1_A 4F3T_A 4EI3_A 1R4K_A.
Probab=23.39 E-value=87 Score=18.43 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=18.9
Q ss_pred CceeeeeCCeeEEeecCCCcEEEEh
Q 040640 153 DGLQIKKDGNWVLVKLLPDAFIINV 177 (195)
Q Consensus 153 ~GLqV~~~g~W~~v~p~~g~~vVnv 177 (195)
+|||++ .|=...|.|..+.+++|+
T Consensus 19 ~Gle~~-rG~~qSvRp~~~~l~lNv 42 (52)
T PF08699_consen 19 GGLEAW-RGFFQSVRPTQGGLLLNV 42 (52)
T ss_dssp TTEEEE-EEEEEEEEEETTEEEEEE
T ss_pred CcEEEe-EeEEeeeEEcCCCCEEEE
Confidence 588876 446678888888899987
No 64
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=22.53 E-value=1.1e+02 Score=19.71 Aligned_cols=25 Identities=12% Similarity=0.209 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
++-++|+..|-+++++.||.+++..
T Consensus 16 EqK~~La~~iT~a~~~~lg~~~e~v 40 (76)
T PRK01271 16 EQKAALAADITDVIIRHLNSKDSSI 40 (76)
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceE
Confidence 4556888899999999999987654
No 65
>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]. They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.
Probab=22.06 E-value=95 Score=17.79 Aligned_cols=38 Identities=16% Similarity=0.324 Sum_probs=22.5
Q ss_pred ccccccccCCCceEEEEecCCCCceeeee---CCeeEEeecCCC
Q 040640 131 VIGLNSHSDASALTILLQINEMDGLQIKK---DGNWVLVKLLPD 171 (195)
Q Consensus 131 ~~g~~~HtD~~~lTlL~q~~~~~GLqV~~---~g~W~~v~p~~g 171 (195)
.++.+|-++...++.+.. ..-++|.. ++.|..|....|
T Consensus 4 nvR~~p~~~s~~i~~l~~---g~~v~v~~~~~~~~W~~V~~~~g 44 (55)
T PF08239_consen 4 NVRSGPSTNSPVIGQLPK---GEKVTVLGESGDGNWYKVRTYDG 44 (55)
T ss_dssp EEESSSSTTSTEEEEEET---TSEEEEEEEETT--EEEEEEETT
T ss_pred EEEeCCCCCChhhEEEeC---CCEEEEEEEcCCcEEEEEECcCC
Confidence 356778888888888754 23455543 223999844333
No 66
>PF12791 RsgI_N: Anti-sigma factor N-terminus; InterPro: IPR024449 The heat shock genes in Bacillus subtilis can be classified into several groups according to their regulation [], and the sigma gene, sigI, of Bacillus subtilis belongs to the group IV heat-shock response genes and has many orthologues in the bacterial phylum Firmicutes []. Regulation of sigma factor I is carried out by RsgI from the same operon. This entry represents the N-terminal cytoplasmic portion of RsgI ('upstream' of the single transmembrane helix) which has been shown to interact directly with Sigma-I [].
Probab=21.89 E-value=70 Score=18.85 Aligned_cols=23 Identities=26% Similarity=0.601 Sum_probs=17.1
Q ss_pred CCeeEEeecCCCcEEEEhhhHHHHHh
Q 040640 160 DGNWVLVKLLPDAFIINVGDVLDVAL 185 (195)
Q Consensus 160 ~g~W~~v~p~~g~~vVnvGd~l~~~T 185 (195)
+|+++.|+..++ +.+|+..+.-.
T Consensus 14 dGeF~~ik~~~~---~~vG~eI~~~~ 36 (56)
T PF12791_consen 14 DGEFIKIKRKPG---MEVGQEIEFDE 36 (56)
T ss_pred CCcEEEEeCCCC---CcccCEEEEec
Confidence 789999988887 77787554433
No 67
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=21.43 E-value=1.2e+02 Score=20.75 Aligned_cols=24 Identities=17% Similarity=0.379 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCChhh
Q 040640 92 TEVKNLTLKMLDQMEKALRMDPNE 115 (195)
Q Consensus 92 ~~~~~l~~~ll~~l~~~Lgl~~~~ 115 (195)
+...+++..|...+.+.||+|.+.
T Consensus 70 ~~n~~~s~~i~~~l~~~LgIp~~R 93 (114)
T PF01187_consen 70 EQNKKYSAAITEFLEEELGIPPDR 93 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHT--GGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCcCc
Confidence 455678888999999999999764
No 68
>PF08066 PMC2NT: PMC2NT (NUC016) domain; InterPro: IPR012588 Exosomes are nano-compartments that function in the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA) [, ]. Exosomes occur in both archaea and eukaryotes, and have a similar overall structure to each other and to bacterial/organelle PNPases (polynucleotide phosphorylases; 2.7.7.8 from EC) [], consisting of a barrel structure composed of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. There are two types of exosomes in eukaryotes, cytoplasmic exosomes that are responsible for 3'-5' exoribonuclease degradation of mRNAs, and nuclear exosomes that degrade pre-mRNAs (such as nonsense transcripts) and degrade rRNAs, snRNAs and snoRNAs. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. There are several accessory proteins that help degrade, unwind or polyadenylate RNA substrate before they enter the exosome. This entry represents the N-terminal domain of Rrp6 (exosome component 10 in humans), a nuclear exosome accessory factor that interacts with the bottom of the hexameric PH-ring opposite the cap. Rrp6 functions as a hydrolytic exonuclease, and is homologous to RNase-D in Escherichia coli. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0006396 RNA processing, 0000176 nuclear exosome (RNase complex)
Probab=21.40 E-value=1.4e+02 Score=19.62 Aligned_cols=27 Identities=15% Similarity=0.204 Sum_probs=13.1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040640 81 LPFRDTLEVYLTEVKNLTLKMLDQMEK 107 (195)
Q Consensus 81 ~~f~~~~~~y~~~~~~l~~~ll~~l~~ 107 (195)
|+|++.+.+-.+++..+...|++....
T Consensus 24 p~f~~~ld~~s~rll~l~n~ll~~~~~ 50 (91)
T PF08066_consen 24 PEFAESLDEQSQRLLSLINSLLKSAGS 50 (91)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555555555555555554444433
No 69
>PRK15336 type III secretion system chaperone SpaK; Provisional
Probab=21.08 E-value=92 Score=22.52 Aligned_cols=25 Identities=8% Similarity=0.141 Sum_probs=21.5
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHH
Q 040640 79 LPLPFRDTLEVYLTEVKNLTLKMLD 103 (195)
Q Consensus 79 ~~~~f~~~~~~y~~~~~~l~~~ll~ 103 (195)
....|..++++|++.+..+...++|
T Consensus 111 d~~~Fa~al~~Ff~~l~~~~~~~~~ 135 (135)
T PRK15336 111 DGEKFSTALNGFYNYLEVFSRSLMR 135 (135)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999887764
No 70
>COG1741 Pirin-related protein [General function prediction only]
Probab=20.92 E-value=1.4e+02 Score=24.35 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=16.3
Q ss_pred cccccccccCCCceEEEEe
Q 040640 130 QVIGLNSHSDASALTILLQ 148 (195)
Q Consensus 130 ~~~g~~~HtD~~~lTlL~q 148 (195)
..++--||.|+.++|.+++
T Consensus 55 ~~f~pHPHrg~etvTyvl~ 73 (276)
T COG1741 55 RGFPPHPHRGLETVTYVLD 73 (276)
T ss_pred CcCCCCCCCCcEEEEEEEc
Confidence 3467789999999999998
No 71
>PF13443 HTH_26: Cro/C1-type HTH DNA-binding domain; PDB: 3TYR_A 3TYS_A 3B7H_A.
Probab=20.54 E-value=93 Score=18.41 Aligned_cols=32 Identities=34% Similarity=0.507 Sum_probs=17.4
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHcCCChhhh
Q 040640 85 DTLEVYLTEV-KNLTLKMLDQMEKALRMDPNEM 116 (195)
Q Consensus 85 ~~~~~y~~~~-~~l~~~ll~~l~~~Lgl~~~~~ 116 (195)
.++..+...= ..+....+..||.+||++.+.+
T Consensus 25 ~tl~~~~~~~~~~~~~~~l~~ia~~l~~~~~el 57 (63)
T PF13443_consen 25 STLSRILNGKPSNPSLDTLEKIAKALNCSPEEL 57 (63)
T ss_dssp HHHHHHHTTT-----HHHHHHHHHHHT--HHHC
T ss_pred HHHHHHHhcccccccHHHHHHHHHHcCCCHHHH
Confidence 4455555543 5677778888899999887654
No 72
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=20.38 E-value=1.3e+02 Score=22.36 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=19.3
Q ss_pred CCCcEEEEhh--------hHHHHHhCCceeee
Q 040640 169 LPDAFIINVG--------DVLDVALITFYCLC 192 (195)
Q Consensus 169 ~~g~~vVnvG--------d~l~~~TnG~~~s~ 192 (195)
.+|+++||+| ++++++.+|++...
T Consensus 118 k~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga 149 (178)
T PF02826_consen 118 KPGAVLVNVARGELVDEDALLDALESGKIAGA 149 (178)
T ss_dssp TTTEEEEESSSGGGB-HHHHHHHHHTTSEEEE
T ss_pred ccceEEEeccchhhhhhhHHHHHHhhccCceE
Confidence 4678888887 48999999998854
No 73
>TIGR02466 conserved hypothetical protein. This family consists of uncharacterized proteins in Caulobacter crescentus CB15, Bdellovibrio bacteriovorus HD100, Synechococcus sp. WH 8102 (2), Silicibacter pomeroyi DSS-3 (2), and Hyphomonas neptunium ATCC 15444. The context of nearby genes differs substantially between members and does point to any specific biological role.
Probab=20.21 E-value=4.1e+02 Score=20.46 Aligned_cols=20 Identities=10% Similarity=0.014 Sum_probs=16.1
Q ss_pred eeEEeecCCCcEEEEhhhHH
Q 040640 162 NWVLVKLLPDAFIINVGDVL 181 (195)
Q Consensus 162 ~W~~v~p~~g~~vVnvGd~l 181 (195)
.|+.|+|.+|.+|+.-..+.
T Consensus 160 ~~~~v~P~~G~lvlFPS~L~ 179 (201)
T TIGR02466 160 RFVYVPPQEGRVLLFESWLR 179 (201)
T ss_pred ccEEECCCCCeEEEECCCCc
Confidence 58889999999998766543
Done!