BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040641
(435 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 140/272 (51%), Gaps = 29/272 (10%)
Query: 189 DILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR-QFTAEMETLGKVKHQNLVLLLGY 247
+IL GGFG VYK L DG VAVK+ + +TQG QF E+E + H+NL+ L G+
Sbjct: 36 NILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGF 95
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------ 301
C E+LLVY YM NGS+ LR S LD KR +IA SARGLA+LH
Sbjct: 96 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKI 155
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGLA+L+ + HV + G +G+I PEY + S+ +
Sbjct: 156 IHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGXIGHIAPEYLSTGKSSEK 215
Query: 341 GDVYSFGVILLELVTAKEPTG-PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSK 399
DV+ +GV+LLEL+T + + L+ WV +K+++ + ++D +
Sbjct: 216 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD 275
Query: 400 PMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +++++A C +P RP M V+++L
Sbjct: 276 EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 307
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 153 bits (387), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 140/272 (51%), Gaps = 29/272 (10%)
Query: 189 DILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR-QFTAEMETLGKVKHQNLVLLLGY 247
+IL GGFG VYK L DG VAVK+ + + QG QF E+E + H+NL+ L G+
Sbjct: 44 NILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVEMISMAVHRNLLRLRGF 103
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------ 301
C E+LLVY YM NGS+ LR S LD KR +IA SARGLA+LH
Sbjct: 104 CMTPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKI 163
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGLA+L+ + HV + GT+G+I PEY + S+ +
Sbjct: 164 IHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDXHVXXAVRGTIGHIAPEYLSTGKSSEK 223
Query: 341 GDVYSFGVILLELVTAKEPTG-PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSK 399
DV+ +GV+LLEL+T + + L+ WV +K+++ + ++D +
Sbjct: 224 TDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEALVDVDLQGNYKD 283
Query: 400 PMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +++++A C +P RP M V+++L
Sbjct: 284 EEVEQLIQVALLCTQSSPMERPKMSEVVRMLE 315
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 126/259 (48%), Gaps = 26/259 (10%)
Query: 194 GGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEE 253
G FG VYK L DG VA+K+ + +QG +F E+ETL +H +LV L+G+C E
Sbjct: 50 GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109
Query: 254 KLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH------------- 300
+L+Y+YM NG+L L + + +R +I +ARGL +LH
Sbjct: 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSIN 169
Query: 301 -----------QDFGLARLISAC-ETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGV 348
DFG+++ + +TH+ + GTLGYI PEY T + DVYSFGV
Sbjct: 170 ILLDENFVPKITDFGISKKGTELDQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229
Query: 349 ILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRI 408
+L E++ A+ +E NL W + Q + ++DP + + + K
Sbjct: 230 VLFEVLCARSAIVQSLP-REMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDT 288
Query: 409 AADCVADNPATRPTMLHVL 427
A C+A + RP+M VL
Sbjct: 289 AVKCLALSSEDRPSMGDVL 307
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 83/259 (32%), Positives = 126/259 (48%), Gaps = 26/259 (10%)
Query: 194 GGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEE 253
G FG VYK L DG VA+K+ + +QG +F E+ETL +H +LV L+G+C E
Sbjct: 50 GVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNE 109
Query: 254 KLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH------------- 300
+L+Y+YM NG+L L + + +R +I +ARGL +LH
Sbjct: 110 MILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSIN 169
Query: 301 -----------QDFGLARLISAC-ETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGV 348
DFG+++ + +TH+ + GTLGYI PEY T + DVYSFGV
Sbjct: 170 ILLDENFVPKITDFGISKKGTELGQTHLXXVVKGTLGYIDPEYFIKGRLTEKSDVYSFGV 229
Query: 349 ILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRI 408
+L E++ A+ +E NL W + Q + ++DP + + + K
Sbjct: 230 VLFEVLCARSAIVQSLP-REMVNLAEWAVESHNNGQLEQIVDPNLADKIRPESLRKFGDT 288
Query: 409 AADCVADNPATRPTMLHVL 427
A C+A + RP+M VL
Sbjct: 289 AVKCLALSSEDRPSMGDVL 307
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 134/270 (49%), Gaps = 35/270 (12%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFSQ----AKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
+GGFG VYK + + TVAVKK + + +QF E++ + K +H+NLV LLG+
Sbjct: 41 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS 99
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------- 301
S ++ LVY YM NGSL L G+ L R KIA +A G+ FLH+
Sbjct: 100 SDGDDLCLVYVYMPNGSLLDRLSCLDGT-PPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 302 -----------------DFGLARLISA-CETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGLAR +T + + I GT Y+ PE + + T + D+
Sbjct: 159 IKSANILLDEAFTAKISDFGLARASEKFAQTVMXSRIVGTTAYMAPEALRGEI-TPKSDI 217
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
YSFGV+LLE++T P E +E + L + +++ +D +D + +A S +
Sbjct: 218 YSFGVVLLEIITGL-PAVDEHREPQLL-LDIKEEIEDEEKTIEDYIDKKMNDADSTSVE- 274
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEI 433
M +A+ C+ + RP + V +LL E+
Sbjct: 275 AMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 133/270 (49%), Gaps = 35/270 (12%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFSQ----AKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
+GGFG VYK + + TVAVKK + + +QF E++ + K +H+NLV LLG+
Sbjct: 41 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS 99
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------- 301
S ++ LVY YM NGSL L G+ L R KIA +A G+ FLH+
Sbjct: 100 SDGDDLCLVYVYMPNGSLLDRLSCLDGT-PPLSWHMRCKIAQGAANGINFLHENHHIHRD 158
Query: 302 -----------------DFGLARLISA-CETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGLAR +T + I GT Y+ PE + + T + D+
Sbjct: 159 IKSANILLDEAFTAKISDFGLARASEKFAQTVMXXRIVGTTAYMAPEALRGEI-TPKSDI 217
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
YSFGV+LLE++T P E +E + L + +++ +D +D + +A S +
Sbjct: 218 YSFGVVLLEIITGL-PAVDEHREPQLL-LDIKEEIEDEEKTIEDYIDKKMNDADSTSVE- 274
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEI 433
M +A+ C+ + RP + V +LL E+
Sbjct: 275 AMYSVASQCLHEKKNKRPDIKKVQQLLQEM 304
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/270 (32%), Positives = 131/270 (48%), Gaps = 35/270 (12%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFSQ----AKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
+GGFG VYK + + TVAVKK + + +QF E++ + K +H+NLV LLG+
Sbjct: 35 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHENLVELLGFS 93
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------- 301
S ++ LVY YM NGSL L G+ L R KIA +A G+ FLH+
Sbjct: 94 SDGDDLCLVYVYMPNGSLLDRLSCLDGT-PPLSWHMRCKIAQGAANGINFLHENHHIHRD 152
Query: 302 -----------------DFGLARLISACETHV-STDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGLAR V I GT Y+ PE + + T + D+
Sbjct: 153 IKSANILLDEAFTAKISDFGLARASEKFAQXVMXXRIVGTTAYMAPEALRGEI-TPKSDI 211
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
YSFGV+LLE++T P E +E + L + +++ +D +D + +A S +
Sbjct: 212 YSFGVVLLEIITGL-PAVDEHREPQLL-LDIKEEIEDEEKTIEDYIDKKMNDADSTSVE- 268
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEI 433
M +A+ C+ + RP + V +LL E+
Sbjct: 269 AMYSVASQCLHEKKNKRPDIKKVQQLLQEM 298
>pdb|3PPZ|A Chain A, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
pdb|3PPZ|B Chain B, Crystal Structure Of Ctr1 Kinase Domain In Complex With
Staurosporine
Length = 309
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 123/282 (43%), Gaps = 47/282 (16%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR--QFTAEMETLGKVKH 238
P L + + + G FGTV++A G VAVK + R +F E+ + +++H
Sbjct: 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
N+VL +G + +V EY+ GSL L + +G+ E LD +R +A A+G+ +
Sbjct: 94 PNIVLFMGAVTQPPNLSIVTEYLSRGSL-YRLLHKSGAREQLDERRRLSMAYDVAKGMNY 152
Query: 299 LHQ--------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYG 332
LH DFGL+RL A S AGT ++ PE
Sbjct: 153 LHNRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRL-KASXFLXSKXAAGTPEWMAPEVL 211
Query: 333 QSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT 392
+ S + DVYSFGVIL EL T ++P G A +V V K K+ + L+P
Sbjct: 212 RDEPSNEKSDVYSFGVILWELATLQQPWG----NLNPAQVVAAVGFKCKRLEIPRNLNPQ 267
Query: 393 VLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
V I C + P RP+ ++ LL ++
Sbjct: 268 VAA------------IIEGCWTNEPWKRPSFATIMDLLRPLI 297
>pdb|3P86|A Chain A, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
pdb|3P86|B Chain B, Crystal Structure Of Ctr1 Kinase Domain Mutant D676n In
Complex With Staurosporine
Length = 309
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/282 (28%), Positives = 123/282 (43%), Gaps = 47/282 (16%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR--QFTAEMETLGKVKH 238
P L + + + G FGTV++A G VAVK + R +F E+ + +++H
Sbjct: 35 PWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRH 93
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
N+VL +G + +V EY+ GSL L + +G+ E LD +R +A A+G+ +
Sbjct: 94 PNIVLFMGAVTQPPNLSIVTEYLSRGSL-YRLLHKSGAREQLDERRRLSMAYDVAKGMNY 152
Query: 299 LHQ--------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYG 332
LH DFGL+RL A S AGT ++ PE
Sbjct: 153 LHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL-KASTFLSSKSAAGTPEWMAPEVL 211
Query: 333 QSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT 392
+ S + DVYSFGVIL EL T ++P G A +V V K K+ + L+P
Sbjct: 212 RDEPSNEKSDVYSFGVILWELATLQQPWG----NLNPAQVVAAVGFKCKRLEIPRNLNPQ 267
Query: 393 VLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
V I C + P RP+ ++ LL ++
Sbjct: 268 VAA------------IIEGCWTNEPWKRPSFATIMDLLRPLI 297
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 85/269 (31%), Positives = 126/269 (46%), Gaps = 35/269 (13%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFSQ----AKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
+GGFG VYK + + TVAVKK + + +QF E++ K +H+NLV LLG+
Sbjct: 32 EGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVXAKCQHENLVELLGFS 90
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------- 301
S ++ LVY Y NGSL L G+ L R KIA +A G+ FLH+
Sbjct: 91 SDGDDLCLVYVYXPNGSLLDRLSCLDGT-PPLSWHXRCKIAQGAANGINFLHENHHIHRD 149
Query: 302 -----------------DFGLARLISACETHV-STDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGLAR V + I GT Y PE + + T + D+
Sbjct: 150 IKSANILLDEAFTAKISDFGLARASEKFAQXVXXSRIVGTTAYXAPEALRGEI-TPKSDI 208
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
YSFGV+LLE++T P E +E + L + +++ +D +D +A S +
Sbjct: 209 YSFGVVLLEIITGL-PAVDEHREPQLL-LDIKEEIEDEEKTIEDYIDKKXNDADSTSVE- 265
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHE 432
+A+ C+ + RP + V +LL E
Sbjct: 266 AXYSVASQCLHEKKNKRPDIKKVQQLLQE 294
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 43/212 (20%)
Query: 191 LEDGGFGTVYKAT----LP--DGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
L +G FG V+ A LP D VAVK +A + F E E L ++HQ++V
Sbjct: 49 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 108
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRN-----------------ATGSHEVLDRAKRYK 287
G C+ L+V+EYM +G L+ +LR+ G ++L A +
Sbjct: 109 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 168
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETH-VSTDIAGTLGYIP 328
GL F+H+ DFG++R I + + + V + ++P
Sbjct: 169 AGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMP 228
Query: 329 PEYGQSRMSTTRGDVYSFGVILLELVT-AKEP 359
PE R TT DV+SFGV+L E+ T K+P
Sbjct: 229 PESILYRKFTTESDVWSFGVVLWEIFTYGKQP 260
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 43/212 (20%)
Query: 191 LEDGGFGTVYKAT----LP--DGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
L +G FG V+ A LP D VAVK +A + F E E L ++HQ++V
Sbjct: 26 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 85
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRN-----------------ATGSHEVLDRAKRYK 287
G C+ L+V+EYM +G L+ +LR+ G ++L A +
Sbjct: 86 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 145
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETH-VSTDIAGTLGYIP 328
GL F+H+ DFG++R I + + + V + ++P
Sbjct: 146 AGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMP 205
Query: 329 PEYGQSRMSTTRGDVYSFGVILLELVT-AKEP 359
PE R TT DV+SFGV+L E+ T K+P
Sbjct: 206 PESILYRKFTTESDVWSFGVVLWEIFTYGKQP 237
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 15 LQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFFD 74
LQ LYL NN TG IP +L LV L+L+ N SG +P+SLG+L L L L N +
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 75 GGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKICKSRL 134
G P+ L + L L N T EIP L N L + + N L G+IP+ I RL
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRL 513
Query: 135 EGLVSQSGICQNLSKISLAGNKDYNLYLSSSRSKGPLRINISMFQ 179
E L LS S +GN L RS L +N ++F
Sbjct: 514 ENLA-----ILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFN 551
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
L+G+IPS G KL+ L L N L G IP+ L + L L L N +G +P+ L N
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Query: 61 KGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNM 120
L+ + LS+N G P+ +G L L L +N F+ IP LG+ L LD+ N+
Sbjct: 490 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549
Query: 121 LCGKIPEKICK 131
G IP + K
Sbjct: 550 FNGTIPAAMFK 560
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
TG IP + +L L+L N L+G+IP SLG L L L L N G +P L +
Sbjct: 406 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 61 KGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNM 120
K L L L N G P L N + ++ L +N+ T EIP+ +G L L L + N
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 121 LCGKIPEKI--CKS 132
G IP ++ C+S
Sbjct: 526 FSGNIPAELGDCRS 539
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
G F ++ + L + N L+G IP+ +G + L LNL N SG +P +G+L+G
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681
Query: 63 LSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNM-L 121
L+ LDLSSN DG P+++ L+ T +DL +N + IP+ +G L N L
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGL 740
Query: 122 CG 123
CG
Sbjct: 741 CG 742
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 40/194 (20%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPR-SLGQLGGLVKLNLTRNKFSGPVPTSLGNLK 61
G++P FG L+ L L +N +G +P +L ++ GL L+L+ N+FSG +P SL NL
Sbjct: 308 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367
Query: 62 G-LSHLDLSSNFFDG----------------------GW----PRSLGNLSYSTYLDLHD 94
L LDLSSN F G G+ P +L N S L L
Sbjct: 368 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 427
Query: 95 NKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKICKSR-LEGLVSQ---------SGI- 143
N + IP +LG+L++L L + NML G+IP+++ + LE L+ SG+
Sbjct: 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487
Query: 144 -CQNLSKISLAGNK 156
C NL+ ISL+ N+
Sbjct: 488 NCTNLNWISLSNNR 501
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
L+G IP E G L L LG+N ++GSIP +G L GL L+L+ NK G +P ++ L
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 61 KGLSHLDLSSNFFDGGWPR 79
L+ +DLS+N G P
Sbjct: 704 TMLTEIDLSNNNLSGPIPE 722
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%)
Query: 37 GGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNK 96
G ++ L+++ N SG +P +G++ L L+L N G P +G+L LDL NK
Sbjct: 632 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691
Query: 97 FTREIPQNLGNLAQLEHLDVLRNMLCGKIPE 127
IPQ + L L +D+ N L G IPE
Sbjct: 692 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFF 73
+L+ L + N+++G + + + L L+++ N FS +P LG+ L HLD+S N
Sbjct: 179 ELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235
Query: 74 DGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKICKSR 133
G + R++ + L++ N+F IP L L++L + N G+IP+ +
Sbjct: 236 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFL---- 289
Query: 134 LEGLVSQSGICQNLSKISLAGNKDY 158
SG C L+ + L+GN Y
Sbjct: 290 -------SGACDTLTGLDLSGNHFY 307
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 9 FGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDL 68
GD LQ L + N+L+G R++ L LN++ N+F GP+P LK L +L L
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 276
Query: 69 SSNFFDGGWPRSL-GNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIP 126
+ N F G P L G T LDL N F +P G+ + LE L + N G++P
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 46/175 (26%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNL---------------- 44
+G+IP+E GD L L L N G+IP ++ + G + N
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 585
Query: 45 -----------------------TRNK-------FSGPVPTSLGNLKGLSHLDLSSNFFD 74
TRN + G + N + LD+S N
Sbjct: 586 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 645
Query: 75 GGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKI 129
G P+ +G++ Y L+L N + IP +G+L L LD+ N L G+IP+ +
Sbjct: 646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
LTG IP G L L L NN +G+IP LG L+ L+L N F+G +P ++
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561
Query: 61 KGLSHLDLSSNF--------------------------FDGGWPRSLGNLSYSTYLDLHD 94
G +++NF F G L LS ++
Sbjct: 562 SG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 95 NKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKI 129
+ N + LD+ NML G IP++I
Sbjct: 618 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 84/188 (44%), Gaps = 21/188 (11%)
Query: 19 YLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPT--SLGNLKGLSHLDLSSNFFDGG 76
+L N+ + GS+ L L+L+RN SGPV T SLG+ GL L++SSN D
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 141
Query: 77 WPRSLG-NLSYSTYLDLHDNKFT--REIPQNLGN-LAQLEHLDVLRNMLCGKIPEKICKS 132
S G L+ LDL N + + L + +L+HL + N + G + C
Sbjct: 142 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV- 200
Query: 133 RLEGLVSQS----------GICQNLSKISLAGNK---DYNLYLSSSRSKGPLRINISMFQ 179
LE L S G C L + ++GNK D++ +S+ L I+ + F
Sbjct: 201 NLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 180 QPLLKLTL 187
P+ L L
Sbjct: 261 GPIPPLPL 268
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/165 (37%), Positives = 79/165 (47%), Gaps = 9/165 (5%)
Query: 15 LQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFFD 74
LQ LYL NN TG IP +L LV L+L+ N SG +P+SLG+L L L L N +
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 75 GGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKICKSRL 134
G P+ L + L L N T EIP L N L + + N L G+IP+ I RL
Sbjct: 453 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI--GRL 510
Query: 135 EGLVSQSGICQNLSKISLAGNKDYNLYLSSSRSKGPLRINISMFQ 179
E L LS S +GN L RS L +N ++F
Sbjct: 511 ENLA-----ILKLSNNSFSGNIPAE--LGDCRSLIWLDLNTNLFN 548
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 67/131 (51%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
L+G+IPS G KL+ L L N L G IP+ L + L L L N +G +P+ L N
Sbjct: 427 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Query: 61 KGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNM 120
L+ + LS+N G P+ +G L L L +N F+ IP LG+ L LD+ N+
Sbjct: 487 TNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 546
Query: 121 LCGKIPEKICK 131
G IP + K
Sbjct: 547 FNGTIPAAMFK 557
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 66/134 (49%), Gaps = 2/134 (1%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
TG IP + +L L+L N L+G+IP SLG L L L L N G +P L +
Sbjct: 403 FTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 61 KGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNM 120
K L L L N G P L N + ++ L +N+ T EIP+ +G L L L + N
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 522
Query: 121 LCGKIPEKI--CKS 132
G IP ++ C+S
Sbjct: 523 FSGNIPAELGDCRS 536
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 2/122 (1%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
G F ++ + L + N L+G IP+ +G + L LNL N SG +P +G+L+G
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 678
Query: 63 LSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNM-L 121
L+ LDLSSN DG P+++ L+ T +DL +N + IP+ +G L N L
Sbjct: 679 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGL 737
Query: 122 CG 123
CG
Sbjct: 738 CG 739
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 97/194 (50%), Gaps = 40/194 (20%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPR-SLGQLGGLVKLNLTRNKFSGPVPTSLGNLK 61
G++P FG L+ L L +N +G +P +L ++ GL L+L+ N+FSG +P SL NL
Sbjct: 305 GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 364
Query: 62 G-LSHLDLSSNFFDG----------------------GW----PRSLGNLSYSTYLDLHD 94
L LDLSSN F G G+ P +L N S L L
Sbjct: 365 ASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF 424
Query: 95 NKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKICKSR-LEGLVSQ---------SGI- 143
N + IP +LG+L++L L + NML G+IP+++ + LE L+ SG+
Sbjct: 425 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 484
Query: 144 -CQNLSKISLAGNK 156
C NL+ ISL+ N+
Sbjct: 485 NCTNLNWISLSNNR 498
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 46/79 (58%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
L+G IP E G L L LG+N ++GSIP +G L GL L+L+ NK G +P ++ L
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 61 KGLSHLDLSSNFFDGGWPR 79
L+ +DLS+N G P
Sbjct: 701 TMLTEIDLSNNNLSGPIPE 719
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 47/91 (51%)
Query: 37 GGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNK 96
G ++ L+++ N SG +P +G++ L L+L N G P +G+L LDL NK
Sbjct: 629 GSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 688
Query: 97 FTREIPQNLGNLAQLEHLDVLRNMLCGKIPE 127
IPQ + L L +D+ N L G IPE
Sbjct: 689 LDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 71/145 (48%), Gaps = 16/145 (11%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFF 73
+L+ L + N+++G + S + L L+++ N FS +P LG+ L HLD+S N
Sbjct: 176 ELKHLAISGNKISGDVDVS--RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 74 DGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKICKSR 133
G + R++ + L++ N+F IP L L++L + N G+IP+ +
Sbjct: 233 SGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFL---- 286
Query: 134 LEGLVSQSGICQNLSKISLAGNKDY 158
SG C L+ + L+GN Y
Sbjct: 287 -------SGACDTLTGLDLSGNHFY 304
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 59/119 (49%), Gaps = 3/119 (2%)
Query: 9 FGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDL 68
GD LQ L + N+L+G R++ L LN++ N+F GP+P LK L +L L
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSL 273
Query: 69 SSNFFDGGWPRSL-GNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIP 126
+ N F G P L G T LDL N F +P G+ + LE L + N G++P
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 332
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 46/175 (26%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNL---------------- 44
+G+IP+E GD L L L N G+IP ++ + G + N
Sbjct: 523 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKK 582
Query: 45 -----------------------TRNK-------FSGPVPTSLGNLKGLSHLDLSSNFFD 74
TRN + G + N + LD+S N
Sbjct: 583 ECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS 642
Query: 75 GGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKI 129
G P+ +G++ Y L+L N + IP +G+L L LD+ N L G+IP+ +
Sbjct: 643 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 59/155 (38%), Gaps = 30/155 (19%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
LTG IP G L L L NN +G+IP LG L+ L+L N F+G +P ++
Sbjct: 499 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 558
Query: 61 KGLSHLDLSSNF--------------------------FDGGWPRSLGNLSYSTYLDLHD 94
G +++NF F G L LS ++
Sbjct: 559 SG----KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 95 NKFTREIPQNLGNLAQLEHLDVLRNMLCGKIPEKI 129
+ N + LD+ NML G IP++I
Sbjct: 615 RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 21/188 (11%)
Query: 19 YLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPT--SLGNLKGLSHLDLSSNFFDGG 76
+L N+ + GS+ L L+L+RN SGPV T SLG+ GL L++SSN D
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFP 138
Query: 77 WPRSLG-NLSYSTYLDLHDNKFT--REIPQNLGN-LAQLEHLDVLRNMLCGKIPEKICKS 132
S G L+ LDL N + + L + +L+HL + N + G + C +
Sbjct: 139 GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVN 198
Query: 133 RLEGLVSQS----------GICQNLSKISLAGNK---DYNLYLSSSRSKGPLRINISMFQ 179
LE L S G C L + ++GNK D++ +S+ L I+ + F
Sbjct: 199 -LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 180 QPLLKLTL 187
P+ L L
Sbjct: 258 GPIPPLPL 265
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 94/212 (44%), Gaps = 43/212 (20%)
Query: 191 LEDGGFGTVYKAT----LP--DGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
L +G FG V+ A LP D VAVK +A + F E E L ++HQ++V
Sbjct: 20 LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRF 79
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRN-----------------ATGSHEVLDRAKRYK 287
G C+ L+V+EYM +G L+ +LR+ G ++L A +
Sbjct: 80 FGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVA 139
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETH-VSTDIAGTLGYIP 328
GL F+H+ DFG++R I + + + V + ++P
Sbjct: 140 AGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMP 199
Query: 329 PEYGQSRMSTTRGDVYSFGVILLELVT-AKEP 359
PE R TT DV+SFGV+L E+ T K+P
Sbjct: 200 PESILYRKFTTESDVWSFGVVLWEIFTYGKQP 231
>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With
Its Activating Protein Tab1
pdb|2YIY|A Chain A, Crystal Structure Of Compound 8 Bound To Tak1-Tab
Length = 307
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 65/281 (23%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLV 242
++ + +++ G FG V KA K VA+K Q +++ R+ F E+ L +V H N+V
Sbjct: 9 EIEVEEVVGRGAFGVVCKAKW-RAKDVAIK---QIESESERKAFIVELRQLSRVNHPNIV 64
Query: 243 LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG-SHEVLDRAKRYKIACSSARGLAFLHQ 301
L G C LV EY GSL L A + A + + CS +G+A+LH
Sbjct: 65 KLYGACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS--QGVAYLHS 120
Query: 302 ----------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
DFG A I +TH+ T+ G+ ++ PE +
Sbjct: 121 MQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHM-TNNKGSAAWMAPEVFE 176
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPT----GPEFQEKEGANLVGWVFQKMKKQQADDVL 389
+ + DV+S+G+IL E++T ++P GP F+ + W +
Sbjct: 177 GSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR-------IMWAVHNGTR------- 222
Query: 390 DPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
P ++ KP+ M R C + +P+ RP+M ++K++
Sbjct: 223 -PPLIKNLPKPIESLMTR----CWSKDPSQRPSMEEIVKIM 258
>pdb|1MQB|A Chain A, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
pdb|1MQB|B Chain B, Crystal Structure Of Ephrin A2 (Epha2) Receptor Protein
Kinase
Length = 333
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 113/279 (40%), Gaps = 45/279 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKT---VAVKKFSQAKTQGHR-QFTAEMETLGKVKH 238
+T ++ G FG VYK L GK VA+K T+ R F E +G+ H
Sbjct: 46 VTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSH 105
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA- 297
N++ L G S + +++ EYM NG+LD +LR G VL + + + LA
Sbjct: 106 HNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLAN 165
Query: 298 --FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSR 335
++H+ DFGL+R++ T G + + PE R
Sbjct: 166 MNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYR 225
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLN 395
T+ DV+SFG+++ E++T E E E + K D PT ++
Sbjct: 226 KFTSASDVWSFGIVMWEVMTYGERPYWELSNHE-----------VMKAINDGFRLPTPMD 274
Query: 396 AGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
S L M C A RP ++ +L +++
Sbjct: 275 CPSAIYQLMM-----QCWQQERARRPKFADIVSILDKLI 308
>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol
Length = 315
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 65/281 (23%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLV 242
++ + +++ G FG V KA K VA+K Q +++ R+ F E+ L +V H N+V
Sbjct: 10 EIEVEEVVGRGAFGVVCKAKW-RAKDVAIK---QIESESERKAFIVELRQLSRVNHPNIV 65
Query: 243 LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG-SHEVLDRAKRYKIACSSARGLAFLHQ 301
L G C LV EY GSL L A + A + + CS +G+A+LH
Sbjct: 66 KLYGACL--NPVCLVMEYAEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCS--QGVAYLHS 121
Query: 302 ----------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
DFG A I +TH+ T+ G+ ++ PE +
Sbjct: 122 MQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI---QTHM-TNNKGSAAWMAPEVFE 177
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPT----GPEFQEKEGANLVGWVFQKMKKQQADDVL 389
+ + DV+S+G+IL E++T ++P GP F+ + W +
Sbjct: 178 GSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFR-------IMWAVHNGTR------- 223
Query: 390 DPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
P ++ KP+ M R C + +P+ RP+M ++K++
Sbjct: 224 -PPLIKNLPKPIESLMTR----CWSKDPSQRPSMEEIVKIM 259
>pdb|2DQ7|X Chain X, Crystal Structure Of Fyn Kinase Domain Complexed With
Staurosporine
Length = 283
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 73/280 (26%), Positives = 107/280 (38%), Gaps = 44/280 (15%)
Query: 177 MFQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKV 236
+++ P L L+ L +G FG V+ T VA+K T F E + + K+
Sbjct: 3 VWEIPRESLQLIKRLGNGQFGEVWMGTWNGNTKVAIKTLKPG-TMSPESFLEEAQIMKKL 61
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
KH LV L S +E +V EYM GSL +L++ G L +A A G+
Sbjct: 62 KHDKLVQLYAVVS-EEPIYIVTEYMNKGSLLDFLKDGEGR--ALKLPNLVDMAAQVAAGM 118
Query: 297 AFLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYG 332
A++ + DFGLARLI E + + PE
Sbjct: 119 AYIERMNYIHRDLRSANILVGNGLICKIADFGLARLIEDNEXTARQGAKFPIKWTAPEAA 178
Query: 333 QSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT 392
T + DV+SFG++L ELVT P +E V ++ Q
Sbjct: 179 LYGRFTIKSDVWSFGILLTELVTKGRVPYPGMNNREVLEQVERGYRMPCPQDC------- 231
Query: 393 VLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
P+ L L I C +P RPT ++ L +
Sbjct: 232 -------PISLHELMI--HCWKKDPEERPTFEYLQSFLED 262
>pdb|3KMM|A Chain A, Structure Of Human Lck Kinase With A Small Molecule
Inhibitor
Length = 288
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 17 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 75
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 76 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 132
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 133 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 192
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 193 YGTFTIKSDVWSFGILLTEIVT 214
>pdb|3KXZ|A Chain A, The Complex Crystal Structure Of Lck With A Probe Molecule
W259
Length = 287
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 16 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 74
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 75 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 131
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 132 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 191
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 192 YGTFTIKSDVWSFGILLTEIVT 213
>pdb|1QPE|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
pdb|1QPJ|A Chain A, Crystal Structure Of The Lymphocyte-Specific Kinase Lck In
Complex With Staurosporine.
pdb|1QPC|A Chain A, Structural Analysis Of The Lymphocyte-Specific Kinase Lck
In Complex With Non-Selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 8 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 66
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 67 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 123
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 124 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 183
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 184 YGTFTIKSDVWSFGILLTEIVT 205
>pdb|2OFU|A Chain A, X-Ray Crystal Structure Of 2-Aminopyrimidine Carbamate 43
Bound To Lck
Length = 273
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 10 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 68
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 69 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 125
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 126 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 185
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 186 YGTFTIKSDVWSFGILLTEIVT 207
>pdb|3LCK|A Chain A, The Kinase Domain Of Human Lymphocyte Kinase (Lck),
Activated Form (Auto-Phosphorylated On Tyr394)
pdb|3BYO|A Chain A, X-Ray Co-Crystal Structure Of 2-Amino-6-Phenylpyrimido[5',
4':5,6]pyrimido[1,2-A]benzimidazol-5(6h)-One 25 Bound To
Lck
Length = 271
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 8 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 66
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 67 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 123
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 124 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 183
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 184 YGTFTIKSDVWSFGILLTEIVT 205
>pdb|2ZM1|A Chain A, Crystal Structure Of Imidazo Pyrazin 1 Bound To The Kinase
Domain Of Human Lck, (Auto-Phosphorylated On Tyr394)
pdb|2ZM4|A Chain A, Crystal Structure Of Imidazo Quinoxaline 1 Bound To The
Kinase Domain Of Human Lck, Activated Form (Auto-
Phosphorylated On Tyr394)
pdb|2ZYB|A Chain A, Crystal Structure Of Phenylimidazo Pyrazin 2 Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC1|A Chain A, Crystal Structure Of Pyrazin Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AC2|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC3|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC4|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC5|A Chain A, Crystal Structure Of Triazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AC8|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACJ|A Chain A, Crystal Structure Of Imidazo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3ACK|A Chain A, Crystal Structure Of Pyrrolo Pyrazine Derivative Bound To
The Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD4|A Chain A, Crystal Structure Of Methoxy Benzofuran Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
pdb|3AD5|A Chain A, Crystal Structure Of Triazolone Derivative Bound To The
Kinase Domain Of Human Lck, (Auto-Phosphorylated On
Tyr394)
pdb|3AD6|A Chain A, Crystal Structure Of Pyrazolo Pyrimidine Derivative Bound
To The Kinase Domain Of Human Lck, (Auto-Phosphorylated
On Tyr394)
Length = 285
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 14 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 72
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 73 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 129
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 130 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 189
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 190 YGTFTIKSDVWSFGILLTEIVT 211
>pdb|3BYM|A Chain A, X-Ray Co-Crystal Structure Aminobenzimidazole Triazine 1
Bound To Lck
Length = 272
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 9 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 67
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 68 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 124
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 125 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEXTAREGAKFPIKWTAPEAIN 184
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 185 YGTFTIKSDVWSFGILLTEIVT 206
>pdb|2PL0|A Chain A, Lck Bound To Imatinib
Length = 289
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 18 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 76
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 77 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 133
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 134 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 193
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 194 YGTFTIKSDVWSFGILLTEIVT 215
>pdb|3BYS|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Amide 10b
pdb|3BYU|A Chain A, Co-Crystal Structure Of Lck And Aminopyrimidine Reverse
Amide 23
Length = 277
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 14 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 72
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 73 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 129
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 130 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 189
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 190 YGTFTIKSDVWSFGILLTEIVT 211
>pdb|3MPM|A Chain A, Lck Complexed With A Pyrazolopyrimidine
Length = 267
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 4 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 62
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 63 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 119
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 120 FIEERNYIHRNLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 179
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 180 YGTFTIKSDVWSFGILLTEIVT 201
>pdb|2OFV|A Chain A, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|2OFV|B Chain B, Crystal Structure Of Aminoquinazoline 1 Bound To Lck
pdb|3B2W|A Chain A, Crystal Structure Of Pyrimidine Amide 11 Bound To Lck
Length = 277
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 13 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 72 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 128
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 129 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 188
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 189 YGTFTIKSDVWSFGILLTEIVT 210
>pdb|2OF2|A Chain A, Crystal Structure Of Furanopyrimidine 8 Bound To Lck
pdb|2OF4|A Chain A, Crystal Structure Of Furanopyrimidine 1 Bound To Lck
Length = 271
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 8 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 66
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 67 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 123
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 124 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 183
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 184 YGTFTIKSDVWSFGILLTEIVT 205
>pdb|2OG8|A Chain A, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
pdb|2OG8|B Chain B, Crystal Structure Of Aminoquinazoline 36 Bound To Lck
Length = 265
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/202 (29%), Positives = 87/202 (43%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G FG V+ VAVK Q + F AE + +++
Sbjct: 3 WEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 61
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 62 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 118
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 119 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAIN 178
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 179 YGTFTIKSDVWSFGILLTEIVT 200
>pdb|1QPD|A Chain A, Structural Analysis Of The Lymphocyte-specific Kinase Lck
In Complex With Non-selective And Src Family Selective
Kinase Inhibitors
Length = 279
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 86/202 (42%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L LV+ L G G V+ VAVK Q + F AE + +++
Sbjct: 8 WEVPRETLKLVERLGAGQAGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQ 66
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
HQ LV L + E ++ EYM NGSL +L+ +G ++ K +A A G+A
Sbjct: 67 HQRLVRLYAVVT-QEPIYIITEYMENGSLVDFLKTPSGIKLTIN--KLLDMAAQIAEGMA 123
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ + DFGLARLI E + + PE
Sbjct: 124 FIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDAEXTAREGAKFPIKWTAPEAIN 183
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 184 YGTFTIKSDVWSFGILLTEIVT 205
>pdb|3DTC|A Chain A, Crystal Structure Of Mixed-Lineage Kinase Mlk1 Complexed
With Compound 16
Length = 271
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 75/292 (25%), Positives = 115/292 (39%), Gaps = 70/292 (23%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKF----SQAKTQGHRQFTAEMETLGKVKHQ 239
+LTL +I+ GGFG VY+A G VAVK + +Q E + +KH
Sbjct: 8 ELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHP 66
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
N++ L G C + LV E+ G L+ L ++L A ARG+ +L
Sbjct: 67 NIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDIL-----VNWAVQIARGMNYL 121
Query: 300 HQ-----------------------------------DFGLARLISACETHVSTDI--AG 322
H DFGLAR E H +T + AG
Sbjct: 122 HDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAR-----EWHRTTKMSAAG 176
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG-ANLVGWVFQKMK 381
++ PE ++ M + DV+S+GV+L EL+T + P F+ +G A G K+
Sbjct: 177 AYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVP----FRGIDGLAVAYGVAMNKLA 232
Query: 382 KQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
+P ++ DC +P +RP+ ++L L I
Sbjct: 233 LPIPSTCPEP-------------FAKLMEDCWNPDPHSRPSFTNILDQLTTI 271
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/170 (31%), Positives = 82/170 (48%), Gaps = 13/170 (7%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
L G IP +L LY+ + ++G+IP L Q+ LV L+ + N SG +P S+ +L
Sbjct: 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148
Query: 61 KGLSHLDLSSNFFDGGWPRSLGNLS-YSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRN 119
L + N G P S G+ S T + + N+ T +IP NL L +D+ RN
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRN 207
Query: 120 MLCG---------KIPEKI--CKSRLEGLVSQSGICQNLSKISLAGNKDY 158
ML G K +KI K+ L + + G+ +NL+ + L N+ Y
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIY 257
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 25/151 (16%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGL-VKLNLTRNKFSGPVPTSLGN 59
L+G++P L G+ N+++G+IP S G L + ++RN+ +G +P + N
Sbjct: 137 LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 60 LKGLSHLDLSSNFFDG--------------------GWPRSLGNLSYSTYL---DLHDNK 96
L L+ +DLS N +G LG + S L DL +N+
Sbjct: 197 LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255
Query: 97 FTREIPQNLGNLAQLEHLDVLRNMLCGKIPE 127
+PQ L L L L+V N LCG+IP+
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 35.0 bits (79), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 8 EFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLK 61
+ G S L GL L NN++ G++P+ L QL L LN++ N G +P GNL+
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQ 291
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 43/211 (20%)
Query: 191 LEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
L +G FG V+ A D VAVK A + F E E L ++H+++V
Sbjct: 21 LGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKF 80
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV----------LDRAKRYKIACSSAR 294
G C + ++V+EYM +G L+ +LR A G V L +++ IA A
Sbjct: 81 YGVCVEGDPLIMVFEYMKHGDLNKFLR-AHGPDAVLMAEGNPPTELTQSQMLHIAQQIAA 139
Query: 295 GLA------FLHQ------------------DFGLARLISACETH-VSTDIAGTLGYIPP 329
G+ F+H+ DFG++R + + + + V + ++PP
Sbjct: 140 GMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP 199
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT-AKEP 359
E R TT DV+S GV+L E+ T K+P
Sbjct: 200 ESIMYRKFTTESDVWSLGVVLWEIFTYGKQP 230
>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family-
Selective Tyrosine Kinase Inhibitor
pdb|2C0I|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0I|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-420983
pdb|2C0O|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0O|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-770041
pdb|2C0T|A Chain A, Src Family Kinase Hck With Bound Inhibitor A-641359
pdb|2C0T|B Chain B, Src Family Kinase Hck With Bound Inhibitor A-641359
Length = 454
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 98/238 (41%), Gaps = 41/238 (17%)
Query: 142 GICQNLSKISLAGNKDYNLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYK 201
G+CQ LS + SS+ + P + ++ P L L L G FG V+
Sbjct: 160 GLCQKLSVPCM-----------SSKPQKPWEKD--AWEIPRESLKLEKKLGAGQFGEVWM 206
Query: 202 ATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYM 261
AT VAVK + + F AE + ++H LV L + E ++ E+M
Sbjct: 207 ATYNKHTKVAVKTM-KPGSMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM 264
Query: 262 VNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------------------- 301
GSL +L++ GS + L K + A G+AF+ Q
Sbjct: 265 AKGSLLDFLKSDEGSKQPL--PKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLV 322
Query: 302 ----DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
DFGLAR+I E + + PE T + DV+SFG++L+E+VT
Sbjct: 323 CKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 380
>pdb|1YI6|A Chain A, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
pdb|1YI6|B Chain B, C-Term Tail Segment Of Human Tyrosine Kinase (258-533)
Length = 276
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 3 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 61
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D A + +
Sbjct: 62 HEKLVQLYAVVS-EEPIXIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 120
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 121 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYG 180
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 181 RFTIKSDVWSFGILLTELTT 200
>pdb|2REI|A Chain A, Kinase Domain Of Human Ephrin Type-a Receptor 7 (epha7)
pdb|3DKO|A Chain A, Complex Between The Kinase Domain Of Human Ephrin Type-A
Receptor 7 (Epha7) And Inhibitor Alw-Ii-49-7
Length = 318
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/273 (24%), Positives = 115/273 (42%), Gaps = 44/273 (16%)
Query: 190 ILEDGGFGTVY--KATLPDGKTVAV--KKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLL 244
++ G FG V + LP + VAV K T+ R+ F E +G+ H N+V L
Sbjct: 50 VIGAGEFGEVCSGRLKLPGKRDVAVAIKTLKVGYTEKQRRDFLCEASIMGQFDHPNVVHL 109
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G + + ++V E+M NG+LD +LR G V+ + + R LA ++H+
Sbjct: 110 EGVVTRGKPVMIVIEFMENGALDAFLRKHDGQFTVIQLVGMLRGIAAGMRYLADMGYVHR 169
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRMSTTRG 341
DFGL+R+I V T G + + PE Q R T+
Sbjct: 170 DLAARNILVNSNLVCKVSDFGLSRVIEDDPEAVYTTTGGKIPVRWTAPEAIQYRKFTSAS 229
Query: 342 DVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPM 401
DV+S+G+++ E+++ E + ++ + ++ + P AG +
Sbjct: 230 DVWSYGIVMWEVMSYGERPYWDMSNQDVIKAI---------EEGYRLPAPMDCPAGLHQL 280
Query: 402 MLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
ML DC A RP ++ +L +++
Sbjct: 281 ML-------DCWQKERAERPKFEQIVGILDKMI 306
>pdb|3KMW|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mgatp)
pdb|3REP|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Mnatp)
Length = 271
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 120/279 (43%), Gaps = 46/279 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVK--KFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+L + L + G ++K G + VK K T+ R F E L H N+
Sbjct: 11 QLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV 69
Query: 242 VLLLGYCSFDE--EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
+ +LG C L+ +M GSL L G++ V+D+++ K A ARG+AFL
Sbjct: 70 LPVLGACQSPPAPHPTLITHWMPYGSLYNVLHE--GTNFVVDQSQAVKFALDMARGMAFL 127
Query: 300 HQ-----------------DFGLARLISACETHVSTDIAGTL---GYIPPEYGQSRMSTT 339
H D + IS + S G + ++ PE Q + T
Sbjct: 128 HTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQSPGRMYAPAWVAPEALQKKPEDT 187
Query: 340 R---GDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNA 396
D++SF V+L ELVT + P + +N+ ++ + A + L PT+
Sbjct: 188 NRRSADMWSFAVLLWELVTREVPFA------DLSNM------EIGMKVALEGLRPTI-PP 234
Query: 397 GSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
G P + K+++I C+ ++PA RP ++ +L ++ D
Sbjct: 235 GISPHVSKLMKI---CMNEDPAKRPKFDMIVPILEKMQD 270
>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor
Length = 535
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K + T F E + + K++
Sbjct: 262 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLR 320
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D A + +
Sbjct: 321 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 379
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 380 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 439
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 440 RFTIKSDVWSFGILLTELTT 459
>pdb|2BDF|A Chain A, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDF|B Chain B, Src Kinase In Complex With Inhibitor Ap23451
pdb|2BDJ|A Chain A, Src Kinase In Complex With Inhibitor Ap23464
Length = 279
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 6 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 64
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D A + +
Sbjct: 65 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 123
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 124 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 183
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 184 RFTIKSDVWSFGILLTELTT 203
>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution.
pdb|1P4O|B Chain B, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a
Resolution
Length = 322
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 26 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 84
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN---ATGSHEVL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ A ++ VL +K ++A
Sbjct: 85 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA 144
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 145 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 204
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 260
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 261 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 296
>pdb|1FMK|A Chain A, Crystal Structure Of Human Tyrosine-Protein Kinase C-Src
pdb|2SRC|A Chain A, Crystal Structure Of Human Tyrosine-protein Kinase C-src,
In Complex With Amp-pnp
Length = 452
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K + T F E + + K++
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLR 237
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D A + +
Sbjct: 238 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 297 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 356
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 357 RFTIKSDVWSFGILLTELTT 376
>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|B Chain B, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|C Chain C, Igf-1rk In Complex With Ligand Msc1609119a-1
pdb|3LW0|D Chain D, Igf-1rk In Complex With Ligand Msc1609119a-1
Length = 304
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 128/289 (44%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 16 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 74
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN---ATGSHEVL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ A ++ VL +K ++A
Sbjct: 75 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMA 134
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 135 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 194
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 195 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 250
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 251 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 286
>pdb|1Y57|A Chain A, Structure Of Unphosphorylated C-Src In Complex With An
Inhibitor
Length = 452
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K + T F E + + K++
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLR 237
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D A + +
Sbjct: 238 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 297 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 356
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 357 RFTIKSDVWSFGILLTELTT 376
>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor
Kinase
Length = 299
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 11 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 69
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 70 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 129
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 130 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPV 189
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 190 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 245
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+L+++R+ C NP RP+ L ++ + E
Sbjct: 246 KPDNCPD----------MLLELMRM---CWQYNPKMRPSFLEIISSIKE 281
>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1
pdb|3DKF|A Chain A, Sgx Clone 5698a65kfg1h1
Length = 317
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 37 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 96
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 97 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 153
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 154 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 213
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 214 KFTTKSDVWSFGVLLWELMTRGAPPYPD 241
>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With
6-Benzyloxyquinoline Inhibitor
Length = 319
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 41 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 100
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 101 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 157
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 158 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 217
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 218 KFTTKSDVWSFGVLLWELMTRGAPPYPD 245
>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CTJ|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Aminopyridine Based Inhibitor
pdb|3CE3|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolopyridinepyridone Based Inhibitor
pdb|3F82|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
N-
(4-(2-Amino-3-Chloropyridin-4-Yloxy)-3-Fluorophenyl)-4-
Ethoxy-1-(4-Fluorophenyl)-2-Oxo-1,2-Dihydropyridine-3-
Carboxamide
pdb|3L8V|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepat Growth Factor Receptor C-Met In Complex With A
Biarylamine Inhibitor
Length = 314
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 36 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 152
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 153 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 212
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 213 KFTTKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
A Pyrrolotriazine Based Inhibitor
Length = 373
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 95 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 154
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 155 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 211
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 212 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 271
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 272 KFTTKSDVWSFGVLLWELMTRGAPPYPD 299
>pdb|3C4C|A Chain A, B-Raf Kinase In Complex With Plx4720
pdb|3C4C|B Chain B, B-Raf Kinase In Complex With Plx4720
Length = 280
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 118/285 (41%), Gaps = 44/285 (15%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 7 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 66
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL + S + K IA +ARG+
Sbjct: 67 HVNILLFMGY-STKPQLAIVTQWCEGSSL---YHHLHASETKFEMKKLIDIARQTARGMD 122
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 123 YLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVI 182
Query: 333 QSRMS---TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVL 389
+ + S + + DVY+FG++L EL+T + P + +VG L
Sbjct: 183 RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG-----------RGSL 231
Query: 390 DPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
P + S +M R+ A+C+ RP+ +L + E+
Sbjct: 232 SPDLSKVRSN-CPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 275
>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met In Complex With
The Microbial Alkaloid K-252a
pdb|1R1W|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Hepatocyte Growth Factor Receptor C-Met
Length = 312
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 34 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 94 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 150
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 151 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 210
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 211 KFTTKSDVWSFGVLLWELMTRGAPPYPD 238
>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972
pdb|3QTI|B Chain B, C-Met Kinase In Complex With Nvp-Bvu972
Length = 314
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 36 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 152
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 153 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQ 212
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 213 KFTTKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|1KSW|A Chain A, Structure Of Human C-Src Tyrosine Kinase (Thr338gly
Mutant) In Complex With N6-Benzyl Adp
Length = 452
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 86/200 (43%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K + T F E + + K++
Sbjct: 179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGTMSPEAFLQEAQVMKKLR 237
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D A + +
Sbjct: 238 HEKLVQLYAVVS-EEPIYIVGEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYV 296
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 297 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 356
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 357 RFTIKSDVWSFGILLTELTT 376
>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1
Receptor Kinase In Complex With Pqip
Length = 301
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 127/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 13 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 71
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 72 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 131
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 132 GEIADGMAYLNANKFVHRDLAARNCXVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 191
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 192 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 247
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+L+++R+ C NP RP+ L ++ + E
Sbjct: 248 KPDNCPD----------MLLELMRM---CWQYNPKMRPSFLEIISSIKE 283
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 59/214 (27%), Positives = 92/214 (42%), Gaps = 46/214 (21%)
Query: 191 LEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
L +G FG V+ A D VAVK + F E E L ++H+++V
Sbjct: 23 LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-------------LDRAKRYKIACS 291
G C + ++V+EYM +G L+ +LR A G + L ++ IA
Sbjct: 83 YGVCGDGDPLIMVFEYMKHGDLNKFLR-AHGPDAMILVDGQPRQAKGELGLSQMLHIASQ 141
Query: 292 SARGLA------FLHQ------------------DFGLARLISACETH-VSTDIAGTLGY 326
A G+ F+H+ DFG++R + + + + V + +
Sbjct: 142 IASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRW 201
Query: 327 IPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEP 359
+PPE R TT DV+SFGVIL E+ T K+P
Sbjct: 202 MPPESIMYRKFTTESDVWSFGVILWEIFTYGKQP 235
>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1
Length = 317
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 37 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 96
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--- 299
LLG C E L+V YM +G L ++RN T + V D A+G+ FL
Sbjct: 97 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKFLASK 153
Query: 300 ---HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
H+D FGLAR + E H T + ++ E Q++
Sbjct: 154 KFVHRDLAARNCMLDEKFTVKVADFGLARDMLDKEFDSVHNKTGAKLPVKWMALESLQTQ 213
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 214 KFTTKSDVWSFGVLLWELMTRGAPPYPD 241
>pdb|3OEZ|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OEZ|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain Complexed With Imatinib
pdb|3OF0|A Chain A, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3OF0|B Chain B, Crystal Structure Of The L317i Mutant Of The Chicken C-Src
Tyrosine Kinase Domain
pdb|3QLF|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLF|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Pyrazolopyrimidine
5
pdb|3QLG|A Chain A, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
pdb|3QLG|B Chain B, Crystal Structure Of The L317i Mutant Of The C-Src
Tyrosine Kinase Domain Complexed With Dasatinib
Length = 286
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKIR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase
pdb|3RHK|A Chain A, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
pdb|3RHK|B Chain B, Crystal Structure Of The Catalytic Domain Of C-Met Kinase
In Complex With Arq 197
Length = 318
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 54 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 113
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 114 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 173
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 174 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 233
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 234 TKSDVWSFGVLLWELMTRGAPPYPD 258
>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
pdb|4GG7|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor
Length = 319
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 55 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 114
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 115 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 174
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 175 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 234
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 235 TKSDVWSFGVLLWELMTRGAPPYPD 259
>pdb|3DQW|A Chain A, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|B Chain B, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|C Chain C, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
pdb|3DQW|D Chain D, C-Src Kinase Domain Thr338ile Mutant In Complex With Atpgs
Length = 286
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEXTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|2HK5|A Chain A, Hck Kinase In Complex With Lck Targetted Inhibitor Pg-
1009247
Length = 270
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 57/202 (28%), Positives = 84/202 (41%), Gaps = 28/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ AT VAVK + F AE + ++
Sbjct: 10 WEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQ 68
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H LV L + E ++ E+M GSL +L++ GS + L K + A G+A
Sbjct: 69 HDKLVKLHAVVT-KEPIYIITEFMAKGSLLDFLKSDEGSKQPL--PKLIDFSAQIAEGMA 125
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F+ Q DFGLAR+I E + + PE
Sbjct: 126 FIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAIN 185
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L+E+VT
Sbjct: 186 FGSFTIKSDVWSFGILLMEIVT 207
>pdb|1YOJ|A Chain A, Crystal Structure Of Src Kinase Domain
pdb|1YOJ|B Chain B, Crystal Structure Of Src Kinase Domain
pdb|1YOM|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
pdb|1YOM|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Purvalanol A
Length = 283
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 10 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 68
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D + + +
Sbjct: 69 HEKLVQLYAVVS-EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYV 127
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 128 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEWTARQGAKFPIKWTAPEAALYG 187
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 188 RFTIKSDVWSFGILLTELTT 207
>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In
Complex With An Mk-2461 Analog With Specificity For The
Activated Receptor
pdb|3R7O|A Chain A, Structure Of Dually Phosphorylated C-Met Receptor Kinase
In Complex With An Mk-2461 Analog
Length = 307
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 35 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 95 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 154
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 155 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEXXSVHNKTGAKLPVKWMALESLQTQKFT 214
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 215 TKSDVWSFGVLLWELMTRGAPPYPD 239
>pdb|1YOL|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
pdb|1YOL|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Cgp77675
Length = 283
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 85/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 10 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 68
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ TG + +++D + + +
Sbjct: 69 HEKLVQLYAVVS-EEPIYIVTEYMNKGSLLDFLKGETGKYLRLPQLVDMSAQIASGMAYV 127
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 128 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 187
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 188 RFTIKSDVWSFGILLTELTT 207
>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain
Of C-Met
pdb|2WKM|A Chain A, X-Ray Structure Of Pha-00665752 Bound To The Kinase Domain
Of C-Met
pdb|3ZXZ|A Chain A, X-Ray Structure Of Pf-04217903 Bound To The Kinase Domain
Of C-Met
pdb|3ZZE|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
N'-
((3z)-4-Chloro-7-Methyl-2-Oxo-1,2-Dihydro-3h-Indol-3-
Ylidene)-2-(4-Hydroxyphenyl)propanohydrazide
pdb|4AOI|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( 3-((1h-
Pyrrolo(2,3-B)pyridin-3-Yl)methyl)-(1,2,4)triazolo(
4,3-B)(1,2,4) Triazin-6-Yl)benzonitrile
pdb|4AP7|A Chain A, Crystal Structure Of C-Met Kinase Domain In Complex With
4-( (6-(4-
Fluorophenyl)-(1,2,4)triazolo(4,3-B)(1,2,
4)triazin-3-Yl)methyl) Phenol
Length = 306
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 33 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 92
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 93 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 152
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 153 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 212
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 213 TKSDVWSFGVLLWELMTRGAPPYPD 237
>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The
Dually-Phosphorylated, Activated State
Length = 308
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 36 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 155
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 156 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 215
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 216 TKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor
Length = 292
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 28 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 87
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 88 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 147
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 148 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 207
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 208 TKSDVWSFGVLLWELMTRGAPPYPD 232
>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor.
pdb|2RFN|B Chain B, X-ray Structure Of C-met With Inhibitor.
pdb|2RFS|A Chain A, X-Ray Structure Of Su11274 Bound To C-Met
pdb|3CCN|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3CD8|A Chain A, X-Ray Structure Of C-Met With Triazolopyridazine
Inhibitor.
pdb|3EFJ|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFJ|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 7
pdb|3EFK|A Chain A, Structure Of C-Met With Pyrimidone Inhibitor 50
pdb|3EFK|B Chain B, Structure Of C-Met With Pyrimidone Inhibitor 50
Length = 310
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 36 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 95
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 96 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 155
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 156 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 215
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 216 TKSDVWSFGVLLWELMTRGAPPYPD 240
>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine
Inhibitor 13
pdb|3U6H|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 26
pdb|3U6I|A Chain A, Crystal Structure Of C-Met In Complex With Pyrazolone
Inhibitor 58a
pdb|4DEG|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridazine Inhibitor 2
pdb|4DEH|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 3
pdb|4DEI|A Chain A, Crystal Structure Of C-Met In Complex With
Triazolopyridinone Inhibitor 24
Length = 309
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 35 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 94
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 95 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 154
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 155 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 214
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 215 TKSDVWSFGVLLWELMTRGAPPYPD 239
>pdb|3G6H|A Chain A, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
pdb|3G6H|B Chain B, Src Thr338ile Inhibited In The Dfg-Asp-Out Conformation
Length = 286
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVIEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|B Chain B, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|C Chain C, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
pdb|3LVP|D Chain D, Crystal Structure Of Bisphosphorylated Igf1-R Kinase
Domain (2p) In Complex With A Bis-Azaindole Inhibitor
Length = 336
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 48 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 106
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 107 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 166
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 167 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 226
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 227 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 282
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 283 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 318
>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
pdb|3F66|B Chain B, Human C-Met Kinase In Complex With Quinoxaline Inhibitor
Length = 298
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 93/208 (44%), Gaps = 36/208 (17%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 31 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 90
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA----- 297
LLG C E L+V YM +G L ++RN T + V D A+G+
Sbjct: 91 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIG---FGLQVAKGMKYLASK 147
Query: 298 -FLHQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSR 335
F+H+D FGLAR + E H T + ++ E Q++
Sbjct: 148 KFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQ 207
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPE 363
TT+ DV+SFGV+L EL+T P P+
Sbjct: 208 KFTTKSDVWSFGVLLWELMTRGAPPYPD 235
>pdb|2OIQ|A Chain A, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|2OIQ|B Chain B, Crystal Structure Of Chicken C-Src Kinase Domain In
Complex With The Cancer Drug Imatinib.
pdb|3D7T|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3DQX|A Chain A, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3DQX|B Chain B, Chicken C-Src Kinase Domain In Complex With Atpgs
pdb|3EN4|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN4|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp121, A Multitargeted
Kinase Inhibitor
pdb|3EN5|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN5|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp494, A Multitargeted
Kinase Inhibitor
pdb|3EN6|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN6|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With Pp102, A Multitargeted
Kinase Inhibitor
pdb|3EN7|A Chain A, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EN7|B Chain B, Targeted Polypharmacology: Crystal Structure Of The C-Src
Kinase Domain In Complex With S1, A Multitargeted Kinase
Inhibitor
pdb|3EL7|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 3
pdb|3EL8|A Chain A, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3EL8|B Chain B, Crystal Structure Of C-Src In Complex With
Pyrazolopyrimidine 5
pdb|3F6X|A Chain A, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|B Chain B, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|C Chain C, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3F6X|D Chain D, C-Src Kinase Domain In Complex With Small Molecule
Inhibitor
pdb|3G6G|A Chain A, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|3G6G|B Chain B, Equally Potent Inhibition Of C-Src And Abl By Compounds
That Recognize Inactive Kinase Conformations
pdb|4AGW|A Chain A, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|4AGW|B Chain B, Discovery Of A Small Molecule Type Ii Inhibitor Of Wild-
Type And Gatekeeper Mutants Of Bcr-Abl, Pdgfralpha, Kit,
And Src Kinases
pdb|3UQF|A Chain A, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQF|B Chain B, C-Src Kinase Domain In Complex With Bki Rm-1-89
pdb|3UQG|A Chain A, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|3UQG|B Chain B, C-Src Kinase Domain In Complex With Bumpless Bki Analog
Uw1243
pdb|4DGG|A Chain A, C-Src Kinase Domain In Complex With Rm-1-176
pdb|4DGG|B Chain B, C-Src Kinase Domain In Complex With Rm-1-176
Length = 286
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|B Chain B, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|C Chain C, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
pdb|3QQU|D Chain D, Cocrystal Structure Of Unphosphorylated Igf With
Pyrimidine 8
Length = 301
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 13 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 71
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 72 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 131
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 132 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 191
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 192 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 247
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 248 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 283
>pdb|3D7U|B Chain B, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|D Chain D, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 277
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 4 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 62
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 63 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 121
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 122 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 181
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 182 RFTIKSDVWSFGILLTELTT 201
>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880
(Gsk1
Length = 302
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 92/205 (44%), Gaps = 30/205 (14%)
Query: 189 DILEDGGFGTVYKATL--PDGKTV--AVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVL 243
+++ G FG VY TL DGK + AVK ++ G QF E + H N++
Sbjct: 34 EVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLS 93
Query: 244 LLGYCSFDE-EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FL 299
LLG C E L+V YM +G L ++RN T + V D + LA F+
Sbjct: 94 LLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFV 153
Query: 300 HQD------------------FGLARLISACE---THVSTDIAGTLGYIPPEYGQSRMST 338
H+D FGLAR + E H T + ++ E Q++ T
Sbjct: 154 HRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFT 213
Query: 339 TRGDVYSFGVILLELVTAKEPTGPE 363
T+ DV+SFGV+L EL+T P P+
Sbjct: 214 TKSDVWSFGVLLWELMTRGAPPYPD 238
>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
pdb|1M7N|B Chain B, Crystal Structure Of Unactivated Apo Insulin-Like Growth
Factor-1 Receptor Kinase Domain
Length = 322
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 26 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 84
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 85 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 144
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 145 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 204
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 205 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 260
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 261 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 296
>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|2ZM3|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And Isoquinolinedione Inhibitor
pdb|3F5P|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|B Chain B, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|C Chain C, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|D Chain D, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|E Chain E, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|F Chain F, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|G Chain G, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|H Chain H, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|I Chain I, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|J Chain J, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|K Chain K, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|M Chain M, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|L Chain L, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|R Chain R, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|S Chain S, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
pdb|3F5P|T Chain T, Complex Structure Of Insulin-Like Growth Factor Receptor
And 3- Cyanoquinoline Inhibitor
Length = 308
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 20 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 78
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 79 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 138
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 139 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIXETDXXRKGGKGLLPV 198
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 199 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 254
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 255 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 290
>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With Bms-754807
[1-(4-((5-Cyclopropyl-
1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2,
4]triazin-2-Yl)-N-
(6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide]
Length = 315
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 19 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 77
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 78 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 137
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 138 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 197
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 198 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 253
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 254 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 289
>pdb|3GEQ|A Chain A, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
pdb|3GEQ|B Chain B, Structural Basis For The Chemical Rescue Of Src Kinase
Activity
Length = 286
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLAAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|3U4W|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc4b
pdb|3U51|A Chain A, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
pdb|3U51|B Chain B, Src In Complex With Dna-Templated Macrocyclic Inhibitor
Mc1
Length = 275
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 2 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 60
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 61 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 119
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 120 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 179
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 180 RFTIKSDVWSFGILLTELTT 199
>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex
With An Hydantoin Inhibitor
Length = 305
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 17 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 75
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 76 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 135
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 136 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 195
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 196 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 251
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 252 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 287
>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A
Benzimidazole Inhibitor
pdb|3NW5|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11b)
pdb|3NW6|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (11a)
pdb|3NW7|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor
(Igf-1r-Wt) Complex With A Carbon-Linked Proline
Isostere Inhibitor (34)
Length = 307
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 19 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 77
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 78 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 137
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 138 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 197
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 198 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 253
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 254 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 289
>pdb|3SVV|A Chain A, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
pdb|3SVV|B Chain B, Crystal Structure Of T338c C-Src Covalently Bound To
Vinylsulfonamide- Pyrazolopyrimidine 9
Length = 286
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVCEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain
pdb|1JQH|B Chain B, Igf-1 Receptor Kinase Domain
pdb|1JQH|C Chain C, Igf-1 Receptor Kinase Domain
Length = 308
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/289 (24%), Positives = 126/289 (43%), Gaps = 58/289 (20%)
Query: 184 KLTLVDILEDGGFGTVYKATL-------PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGK 235
K+T+ L G FG VY+ P+ + VA+K ++A + R +F E + +
Sbjct: 20 KITMSRELGQGSFGMVYEGVAKGVVKDEPETR-VAIKTVNEAASMRERIEFLNEASVMKE 78
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE---VL---DRAKRYKIA 289
++V LLG S + L++ E M G L +LR+ E VL +K ++A
Sbjct: 79 FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPEMENNPVLAPPSLSKMIQMA 138
Query: 290 CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------ 325
A G+A+L+ + + R ++A V+ D +G
Sbjct: 139 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPV 198
Query: 326 -YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQ 383
++ PE + + TT DV+SFGV+L E+ T A++P +Q ++ +V +
Sbjct: 199 RWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQP----YQGLSNEQVLRFVMEGGLLD 254
Query: 384 QADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
+ D+ D M+ +++R+ C NP RP+ L ++ + E
Sbjct: 255 KPDNCPD----------MLFELMRM---CWQYNPKMRPSFLEIISSIKE 290
>pdb|4FK3|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
pdb|4FK3|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx3203
Length = 292
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 44/285 (15%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 19 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 78
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL + S + K IA +ARG+
Sbjct: 79 HVNILLFMGY-STKPQLAIVTQWCEGSSL---YHHLHASETKFEMKKLIDIARQTARGMD 134
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA S +H ++G++ ++ PE
Sbjct: 135 YLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194
Query: 333 QSRMS---TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVL 389
+ + S + + DVY+FG++L EL+T + P + +VG L
Sbjct: 195 RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG-----------RGSL 243
Query: 390 DPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
P + S +M R+ A+C+ RP+ +L + E+
Sbjct: 244 SPDLSKVRSN-CPKRMKRLMAECLKKKRDERPSFPRILAEIEELA 287
>pdb|3OG7|A Chain A, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
pdb|3OG7|B Chain B, B-Raf Kinase V600e Oncogenic Mutant In Complex With
Plx4032
Length = 289
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/286 (23%), Positives = 118/286 (41%), Gaps = 46/286 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 19 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 78
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL + S + K IA +ARG+
Sbjct: 79 HVNILLFMGY-STAPQLAIVTQWCEGSSL---YHHLHASETKFEMKKLIDIARQTARGMD 134
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA S +H ++G++ ++ PE
Sbjct: 135 YLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVI 194
Query: 333 QSRMS---TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVL 389
+ + S + + DVY+FG++L EL+T + P + +VG L
Sbjct: 195 RMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVG-----------RGSL 243
Query: 390 DPTVLNAGSK-PMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
P + S P +K R+ A+C+ RP+ +L + E+
Sbjct: 244 SPDLSKVRSNCPKRMK--RLMAECLKKKRDERPSFPRILAEIEELA 287
>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742f Triple Mutant
Length = 373
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
F+H+ DFGL+R++ T G + + PE R
Sbjct: 167 GFVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|2QQ7|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QQ7|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain With
Irreversible Inhibitor
pdb|2QI8|A Chain A, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|2QI8|B Chain B, Crystal Structure Of Drug Resistant Src Kinase Domain
pdb|3F3W|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3F3W|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With
Inhibitor Rl45 (Type Ii)
pdb|3LOK|A Chain A, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
pdb|3LOK|B Chain B, Drug Resistant Csrc Kinase Domain In Complex With Covalent
Inhibitor Pd168393
Length = 286
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM G L +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVMEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:s768a Triple Mutant
Length = 373
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGLAR++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLARVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 103/273 (37%), Gaps = 38/273 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+LT V + G FG V+ + VA+K + + F E E + K+ H LV
Sbjct: 28 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIKEG-SMSEDDFIEEAEVMMKLSHPKLVQ 86
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG----------SHEVLDRAKRYKIACSSA 293
L G C LV+E+M +G L +LR G +V + + AC
Sbjct: 87 LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 146
Query: 294 RGLAFLH-----------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGD 342
R LA + DFG+ R + + ST + + PE +++ D
Sbjct: 147 RDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSD 206
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMM 402
V+SFGV++ E+ + + E + F+ K + A
Sbjct: 207 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST--------------- 251
Query: 403 LKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
+ +I C + P RP +L+ L EI +
Sbjct: 252 -HVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 283
>pdb|2HWO|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWO|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor
pdb|2HWP|A Chain A, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2HWP|B Chain B, Crystal Structure Of Src Kinase Domain In Complex With
Covalent Inhibitor Pd168393
pdb|2QLQ|A Chain A, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|2QLQ|B Chain B, Crystal Structure Of Src Kinase Domain With Covalent
Inhibitor Rl3
pdb|3F3T|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3T|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl38 (Type
Iii)
pdb|3F3U|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3U|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl37 (Type
Iii)
pdb|3F3V|A Chain A, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3F3V|B Chain B, Kinase Domain Of Csrc In Complex With Inhibitor Rl45 (Type
Ii)
pdb|3G5D|A Chain A, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3G5D|B Chain B, Kinase Domain Of Csrc In Complex With Dasatinib
pdb|3TZ7|A Chain A, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ7|B Chain B, Kinase Domain Of Csrc In Complex With Rl103
pdb|3TZ8|A Chain A, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ8|B Chain B, Kinase Domain Of Csrc In Complex With Rl104
pdb|3TZ9|A Chain A, Kinase Domain Of Csrc In Complex With Rl130
pdb|3TZ9|B Chain B, Kinase Domain Of Csrc In Complex With Rl130
Length = 286
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K T F E + + K++
Sbjct: 13 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLR 71
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM G L +L+ G + +++D A + +
Sbjct: 72 HEKLVQLYAVVS-EEPIYIVTEYMSKGCLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 130
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGLARLI E + + PE
Sbjct: 131 ERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYG 190
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 191 RFTIKSDVWSFGILLTELTT 210
>pdb|3A4O|X Chain X, Lyn Kinase Domain
Length = 286
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/202 (26%), Positives = 83/202 (41%), Gaps = 27/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P + LV L G FG V+ + VAVK T + F E + ++
Sbjct: 8 WEIPRESIKLVKRLGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQ 66
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H LV L + +E ++ EYM GSL +L++ G +L K + A G+A
Sbjct: 67 HDKLVRLYAVVTREEPIYIITEYMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQIAEGMA 124
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
++ + DFGLAR+I E + + PE
Sbjct: 125 YIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAIN 184
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L E+VT
Sbjct: 185 FGCFTIKSDVWSFGILLYEIVT 206
>pdb|1JPA|A Chain A, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
pdb|1JPA|B Chain B, Crystal Structure Of Unphosphorylated Ephb2 Receptor
Tyrosine Kinase And Juxtamembrane Region
Length = 312
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 190 ILEDGGFGTVYKA--TLPDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLL 244
++ G FG V LP + VA+K T+ R+ F +E +G+ H N++ L
Sbjct: 40 VIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHL 99
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G + +++ E+M NGSLD +LR G V+ + + + LA ++H+
Sbjct: 100 EGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHR 159
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIP-----PEYGQSRMST 338
DFGL+R + +T T + G IP PE Q R T
Sbjct: 160 DLAARNILVNSNLVCKVSDFGLSRFLED-DTSDPTYTSALGGKIPIRWTAPEAIQYRKFT 218
Query: 339 TRGDVYSFGVILLELVTAKE 358
+ DV+S+G+++ E+++ E
Sbjct: 219 SASDVWSYGIVMWEVMSYGE 238
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 102/273 (37%), Gaps = 38/273 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+LT V + G FG V+ + VA+K + F E E + K+ H LV
Sbjct: 8 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQ 66
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG----------SHEVLDRAKRYKIACSSA 293
L G C LV+E+M +G L +LR G +V + + AC
Sbjct: 67 LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 126
Query: 294 RGLAFLH-----------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGD 342
R LA + DFG+ R + + ST + + PE +++ D
Sbjct: 127 RDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSD 186
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMM 402
V+SFGV++ E+ + + E + F+ K + A
Sbjct: 187 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST--------------- 231
Query: 403 LKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
+ +I C + P RP +L+ L EI +
Sbjct: 232 -HVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 263
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 102/273 (37%), Gaps = 38/273 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+LT V + G FG V+ + VA+K + F E E + K+ H LV
Sbjct: 11 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQ 69
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG----------SHEVLDRAKRYKIACSSA 293
L G C LV+E+M +G L +LR G +V + + AC
Sbjct: 70 LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 129
Query: 294 RGLAFLH-----------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGD 342
R LA + DFG+ R + + ST + + PE +++ D
Sbjct: 130 RDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSD 189
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMM 402
V+SFGV++ E+ + + E + F+ K + A
Sbjct: 190 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST--------------- 234
Query: 403 LKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
+ +I C + P RP +L+ L EI +
Sbjct: 235 -HVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266
>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With
Adpnp
Length = 275
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ TD+ GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|2HEN|A Chain A, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|B Chain B, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|C Chain C, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
pdb|2HEN|D Chain D, Crystal Structure Of The Ephb2 Receptor Kinase Domain In
Complex With Adp
Length = 286
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 90/200 (45%), Gaps = 32/200 (16%)
Query: 190 ILEDGGFGTVYKA--TLPDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLL 244
++ G FG V LP + VA+K T+ R+ F +E +G+ H N++ L
Sbjct: 14 VIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHL 73
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G + +++ E+M NGSLD +LR G V+ + + + LA ++H+
Sbjct: 74 EGVVTKSTPVMIITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHR 133
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIP-----PEYGQSRMST 338
DFGL+R + +T T + G IP PE Q R T
Sbjct: 134 ALAARNILVNSNLVCKVSDFGLSRFLED-DTSDPTYTSALGGKIPIRWTAPEAIQYRKFT 192
Query: 339 TRGDVYSFGVILLELVTAKE 358
+ DV+S+G+++ E+++ E
Sbjct: 193 SASDVWSYGIVMWEVMSYGE 212
>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
pdb|2C6E|B Chain B, Aurora A Kinase Activated Mutant (T287d) In Complex With A
5-Aminopyrimidinyl Quinazoline Inhibitor
Length = 283
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 24 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 83
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 84 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 140
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ TD+ GTL Y+PPE + RM + D++S GV+
Sbjct: 141 PENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 200
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 201 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 247
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 248 -----HNPSQRPMLREVLE 261
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 102/273 (37%), Gaps = 38/273 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+LT V + G FG V+ + VA+K + F E E + K+ H LV
Sbjct: 6 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQ 64
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG----------SHEVLDRAKRYKIACSSA 293
L G C LV+E+M +G L +LR G +V + + AC
Sbjct: 65 LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 124
Query: 294 RGLAFLH-----------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGD 342
R LA + DFG+ R + + ST + + PE +++ D
Sbjct: 125 RDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSD 184
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMM 402
V+SFGV++ E+ + + E + F+ K + A
Sbjct: 185 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST--------------- 229
Query: 403 LKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
+ +I C + P RP +L+ L EI +
Sbjct: 230 -HVYQIMNHCWKERPEDRPAFSRLLRQLAEIAE 261
>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A
Gsk3beta Inhibitor
Length = 287
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ TD+ GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor
Awl-Ii- 38.3
pdb|4G2F|A Chain A, Human Epha3 Kinase Domain In Complex With Compound 7
pdb|4GK2|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 66
pdb|4GK3|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 87
pdb|4GK4|A Chain A, Human Epha3 Kinase Domain In Complex With Ligand 90
Length = 361
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 35 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 94
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 95 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 154
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 155 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 214
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 215 FTSASDVWSYGIVLWEVMSYGE 236
>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A
Inhibitors: Structure Basis For Potency And Specificity
pdb|3K5U|A Chain A, Identification, Sar Studies And X-Ray Cocrystal Analysis
Of A Novel Furano-Pyrimidine Aurora Kinase A Inhibitor
pdb|3M11|A Chain A, Crystal Structure Of Aurora A Kinase Complexed With
Inhibitor
Length = 279
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/259 (24%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 20 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 79
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 80 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 136
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ TD+ GTL Y+PPE + RM + D++S GV+
Sbjct: 137 PENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 196
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 197 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 243
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 244 -----HNPSQRPMLREVLE 257
>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f
Double Mutant
Length = 373
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex
pdb|1AD5|B Chain B, Src Family Kinase Hck-Amp-Pnp Complex
pdb|2HCK|A Chain A, Src Family Kinase Hck-Quercetin Complex
pdb|2HCK|B Chain B, Src Family Kinase Hck-Quercetin Complex
Length = 438
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 95/228 (41%), Gaps = 31/228 (13%)
Query: 142 GICQNLSKISLAGNKDYNLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYK 201
G+CQ LS + SS+ + P + ++ P L L L G FG V+
Sbjct: 154 GLCQKLSVPCM-----------SSKPQKPWEKD--AWEIPRESLKLEKKLGAGQFGEVWM 200
Query: 202 ATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYM 261
AT VAVK + F AE + ++H LV L + E ++ E+M
Sbjct: 201 ATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEFM 258
Query: 262 VNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACETHVSTDIA 321
GSL +L++ GS + L K + A G+AF+ Q + R + A VS +
Sbjct: 259 AKGSLLDFLKSDEGSKQPL--PKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLV 316
Query: 322 GTLG--------------YIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ + PE T + DV+SFG++L+E+VT
Sbjct: 317 CKIADFGLARVGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVT 364
>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant
Length = 373
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant
Length = 373
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane
Region
pdb|2QO2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Apo Structure
pdb|2QO9|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Phosphorylated, Amp-pnp Bound
Length = 373
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnye[ptyr]iw
pdb|3FY2|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To
Substrate Kqwdnyefiw
Length = 371
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 45 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 104
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 105 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 164
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 165 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 224
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 225 FTSASDVWSYGIVLWEVMSYGE 246
>pdb|1FVR|A Chain A, Tie2 Kinase Domain
pdb|1FVR|B Chain B, Tie2 Kinase Domain
Length = 327
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 189 DILEDGGFGTVYKATLP-DG--KTVAVKKFSQ-AKTQGHRQFTAEMETLGKVKHQ-NLVL 243
D++ +G FG V KA + DG A+K+ + A HR F E+E L K+ H N++
Sbjct: 31 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 90
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRN------------ATGSHEVLDRAKRYKIACS 291
LLG C L EY +G+L +LR A + L + A
Sbjct: 91 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 150
Query: 292 SARGL------AFLHQDFGLARLISACETHVS------------TDIAGTLGYIPPEYG- 332
ARG+ F+H+D AR I E +V+ + T+G +P +
Sbjct: 151 VARGMDYLSQKQFIHRDLA-ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMA 209
Query: 333 ----QSRMSTTRGDVYSFGVILLELVT 355
+ TT DV+S+GV+L E+V+
Sbjct: 210 IESLNYSVYTTNSDVWSYGVLLWEIVS 236
>pdb|1K9A|A Chain A, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|B Chain B, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|C Chain C, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|D Chain D, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|E Chain E, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
pdb|1K9A|F Chain F, Crystal Structure Analysis Of Full-Length
Carboxyl-Terminal Src Kinase At 2.5 A Resolution
Length = 450
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 113/272 (41%), Gaps = 44/272 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+L L+ + G FG V G VAVK T + F AE + +++H NLV
Sbjct: 194 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQ 250
Query: 244 LLGYCSFDEEK---LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA----RGL 296
LLG EEK +V EYM GSL +LR+ S D ++ + A G
Sbjct: 251 LLGVIV--EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 308
Query: 297 AFLHQDFGLARLISACETHV-------------STDIAGTL--GYIPPEYGQSRMSTTRG 341
F+H+D AR + E +V ST G L + PE + + +T+
Sbjct: 309 NFVHRDLA-ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKS 367
Query: 342 DVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPM 401
DV+SFG++L E+ + P K+ V +K K A D P V +
Sbjct: 368 DVWSFGILLWEIYSFGRVPYPRIPLKDVVPRV----EKGYKMDAPDGCPPAVYD------ 417
Query: 402 MLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
+ +C + ATRPT L + + L I
Sbjct: 418 ------VMKNCWHLDAATRPTFLQLREQLEHI 443
>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound
Structure
Length = 344
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 18 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 77
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 78 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 137
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 138 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 197
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 198 FTSASDVWSYGIVLWEVMSYGE 219
>pdb|3K54|A Chain A, Structures Of Human Bruton's Tyrosine Kinase In Active And
Inactive Conformations Suggests A Mechanism Of
Activation For Tec Family Kinases
Length = 283
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 38/272 (13%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 26 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 84
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 85 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 144
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEETSSVGSKFPVRWSPPEVLMYSKFSSKSDI 204
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
++FGV++ E+ + + F E A + + + A +
Sbjct: 205 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASE---------------- 248
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
K+ I C + RPT +L + +++D
Sbjct: 249 KVYTIMYSCWHEKADERPTFKILLSNILDVMD 280
>pdb|2PZ5|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZ5|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549t Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIITLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|2OO8|X Chain X, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2OSC|A Chain A, Synthesis, Structural Analysis, And Sar Studies Of
Triazine Derivatives As Potent, Selective Tie-2
Inhibitors
pdb|2P4I|A Chain A, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|2P4I|B Chain B, Evolution Of A Highly Selective And Potent
2-(Pyridin-2-Yl)- 1,3,5-Triazine Tie-2 Kinase Inhibitor
pdb|3L8P|A Chain A, Crystal Structure Of Cytoplasmic Kinase Domain Of Tie2
Complexed With Inhibitor Cep11207
Length = 317
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 189 DILEDGGFGTVYKATLP-DG--KTVAVKKFSQ-AKTQGHRQFTAEMETLGKVKHQ-NLVL 243
D++ +G FG V KA + DG A+K+ + A HR F E+E L K+ H N++
Sbjct: 21 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 80
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRN------------ATGSHEVLDRAKRYKIACS 291
LLG C L EY +G+L +LR A + L + A
Sbjct: 81 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 140
Query: 292 SARGL------AFLHQDFGLARLISACETHVS------------TDIAGTLGYIPPEYG- 332
ARG+ F+H+D AR I E +V+ + T+G +P +
Sbjct: 141 VARGMDYLSQKQFIHRDLA-ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMA 199
Query: 333 ----QSRMSTTRGDVYSFGVILLELVT 355
+ TT DV+S+GV+L E+V+
Sbjct: 200 IESLNYSVYTTNSDVWSYGVLLWEIVS 226
>pdb|2R2P|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 5 (Epha5)
Length = 295
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 91/202 (45%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+T+ ++ G FG V + LP + VA+K T+ R+ F E +G+ H
Sbjct: 24 ITIERVIGAGEFGEVCSGRLKLPGKRELPVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 83
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +L+ G V+ + + + L+
Sbjct: 84 NIIHLEGVVTKSKPVMIVTEYMENGSLDTFLKKNDGQFTVIQLVGMLRGISAGMKYLSDM 143
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 144 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAFRK 203
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G+++ E+V+ E
Sbjct: 204 FTSASDVWSYGIVMWEVVSYGE 225
>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596:y602:s768g Triple Mutant
Length = 373
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V EYM NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL R++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|3KUL|B Chain B, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 24/173 (13%)
Query: 210 VAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDL 268
VA+K T+ R+ F +E +G+ H N++ L G + ++V EYM NGSLD
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDT 139
Query: 269 WLRNATGSHEVLDRAKRYKIACSSAR---GLAFLHQ------------------DFGLAR 307
+LR G ++ + + R L ++H+ DFGL+R
Sbjct: 140 FLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 308 LISACETHVSTDIAGTLG--YIPPEYGQSRMSTTRGDVYSFGVILLELVTAKE 358
++ T G + + PE R ++ DV+SFGV++ E++ E
Sbjct: 200 VLEDDPDAAXTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE 252
>pdb|3GEN|A Chain A, The 1.6 A Crystal Structure Of Human Bruton's Tyrosine
Kinase Bound To A Pyrrolopyrimidine-Containing Compound
Length = 283
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 38/272 (13%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 26 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 84
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 85 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 144
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 145 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 204
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
++FGV++ E+ + + F E A + + + A +
Sbjct: 205 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASE---------------- 248
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
K+ I C + RPT +L + +++D
Sbjct: 249 KVYTIMYSCWHEKADERPTFKILLSNILDVMD 280
>pdb|2PVY|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|C Chain C, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome.
pdb|2PVY|D Chain D, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K659n Mutation Responsible For
An Unclassified Craniosynostosis Syndrome
Length = 324
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 130/305 (42%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + +T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKNT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|2PTK|A Chain A, Chicken Src Tyrosine Kinase
Length = 453
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/200 (26%), Positives = 83/200 (41%), Gaps = 24/200 (12%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P L L L G FG V+ T VA+K + F E + + K++
Sbjct: 180 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTL-KPGNMSPEAFLQEAQVMKKLR 238
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH----EVLDRAKRYKIACSSA 293
H+ LV L S +E +V EYM GSL +L+ G + +++D A + +
Sbjct: 239 HEKLVQLYAVVS-EEPIYIVTEYMSKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYV 297
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+ ++H+D FGL RLI E + + PE
Sbjct: 298 ERMNYVHRDLRAANILVGENLVCKVADFGLGRLIEDNEYTARQGAKFPIKWTAPEAALYG 357
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+SFG++L EL T
Sbjct: 358 RFTIKSDVWSFGILLTELTT 377
>pdb|2PZR|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
pdb|2PZR|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K641r Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMRIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|3KUL|A Chain A, Kinase Domain Of Human Ephrin Type-A Receptor 8 (Epha8)
Length = 325
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 76/173 (43%), Gaps = 24/173 (13%)
Query: 210 VAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDL 268
VA+K T+ R+ F +E +G+ H N++ L G + ++V EYM NGSLD
Sbjct: 80 VAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDT 139
Query: 269 WLRNATGSHEVLDRAKRYKIACSSAR---GLAFLHQ------------------DFGLAR 307
+LR G ++ + + R L ++H+ DFGL+R
Sbjct: 140 FLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSR 199
Query: 308 LISACETHVSTDIAGTLG--YIPPEYGQSRMSTTRGDVYSFGVILLELVTAKE 358
++ T G + + PE R ++ DV+SFGV++ E++ E
Sbjct: 200 VLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGE 252
>pdb|3OCS|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase In Complex
With Inhibitor Cgi1746
Length = 271
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 11 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 69
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 70 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 129
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 130 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 189
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
++FGV++ E+ + + F E A + Q + P + +
Sbjct: 190 WAFGVLMWEIYSLGKMPYERFTNSETAEHIA---------QGLRLYRPHLASE------- 233
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
K+ I C + RPT +L + +++D
Sbjct: 234 KVYTIMYSCWHEKADERPTFKILLSNILDVMD 265
>pdb|2PWL|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome.
pdb|2PWL|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic N549h Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIIHLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|3PIX|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Isopropyl-7-
(4-Methyl-Piperazin-1-Yl)-4-(5-Methyl-2h-Pyrazol-3-
Ylamino)-2h- Phthalazin-1-One
pdb|3PIY|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With R406
pdb|3PIZ|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
(5-Amino-1-O-
Tolyl-1h-Pyrazol-4-Yl)-[3-(1-Methanesulfonyl-Piperidin-
4-Yl)-Phenyl]- Methanone
pdb|3PJ1|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
3-(2,6-Dichloro-
Phenyl)-7-[4-(2-Diethylamino-Ethoxy)-Phenylamino]-1-
Methyl-3,4- Dihydro-1h-Pyrimido[4,5-D]pyrimidin-2-One
pdb|3PJ2|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-[4-(2-
Diethylamino-Ethoxy)-Phenylamino]-6-(4-Fluoro-Phenoxy)-
8-Methyl-8h- Pyrido[2,3-D]pyrimidin-7-One
pdb|3PJ3|A Chain A, Crystal Structure Of Btk Kinase Domain Complexed With
2-Methyl-5-[(E)-
(3-Phenyl-Acryloyl)amino]-N-(2-Phenyl-3h-Imidazo[4,
5-B]pyridin-6-Yl)- Benzamide
Length = 274
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 38/272 (13%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 17 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 75
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 76 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 135
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 136 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 195
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
++FGV++ E+ + + F E A + + + A +
Sbjct: 196 WAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYRPHLASE---------------- 239
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
K+ I C + RPT +L + +++D
Sbjct: 240 KVYTIMYSCWHEKADERPTFKILLSNILDVMD 271
>pdb|2PZP|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
pdb|2PZP|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic K526e Mutation Responsible For
Crouzon Syndrome
Length = 324
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEEDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|3OCT|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Mutant V555r
In Complex With Dasatinib
Length = 265
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 103/272 (37%), Gaps = 38/272 (13%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 11 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 69
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 70 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 129
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 130 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSRGSKFPVRWSPPEVLMYSKFSSKSDI 189
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
++FGV++ E+ + + F E A + Q + P + +
Sbjct: 190 WAFGVLMWEIYSLGKMPYERFTNSETAEHIA---------QGLRLYRPHLASE------- 233
Query: 404 KMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
K+ I C + RPT +L + +++D
Sbjct: 234 KVYTIMYSCWHEKADERPTFKILLSNILDVMD 265
>pdb|1K2P|A Chain A, Crystal Structure Of Bruton's Tyrosine Kinase Domain
pdb|1K2P|B Chain B, Crystal Structure Of Bruton's Tyrosine Kinase Domain
Length = 263
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 22/211 (10%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 6 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 64
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 65 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 124
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 125 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 184
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVG 374
++FGV++ E+ + + F E A +
Sbjct: 185 WAFGVLMWEIYSLGKMPYERFTNSETAEHIA 215
>pdb|3P08|A Chain A, Crystal Structure Of The Human Btk Kinase Domain
pdb|3P08|B Chain B, Crystal Structure Of The Human Btk Kinase Domain
Length = 267
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/211 (23%), Positives = 83/211 (39%), Gaps = 22/211 (10%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
LT + L G FG V VA+K + + +F E + + + H+ LV L
Sbjct: 10 LTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQL 68
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA---FLHQ 301
G C+ ++ EYM NG L +LR + + K C + L FLH+
Sbjct: 69 YGVCTKQRPIFIITEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHR 128
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + E S + + PPE +++ D+
Sbjct: 129 DLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDI 188
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVG 374
++FGV++ E+ + + F E A +
Sbjct: 189 WAFGVLMWEIYSLGKMPYERFTNSETAEHIA 219
>pdb|2XRU|A Chain A, Aurora-A T288e Complexed With Pha-828300
Length = 280
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T++ GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRTELCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|3CJG|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 82/306 (26%), Positives = 127/306 (41%), Gaps = 65/306 (21%)
Query: 171 LRINISMFQQPLLKLTLVDILEDGGFGTVYKA------TLPDGKTVAVKKFSQAKTQG-H 223
L + S ++ P +L L L G FG V +A +TVAVK + T H
Sbjct: 15 LPYDASKWEFPRDRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEH 74
Query: 224 RQFTAEMETLGKVKHQ-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLD 281
R +E++ L + H N+V LLG C+ L+V E+ G+L +LR + +E +
Sbjct: 75 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR--SKRNEFVP 132
Query: 282 RAKRYK-------IACSS---ARGLAFL------HQD------------------FGLAR 307
YK + C S A+G+ FL H+D FGLAR
Sbjct: 133 YKDLYKDFLTLEHLICYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLAR 192
Query: 308 LISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEF 364
I +V D L ++ PE R+ T + DV+SFGV+L E+ + A G +
Sbjct: 193 DIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI 252
Query: 365 QEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTML 424
E+ L ++ + +A D P +M + DC P+ RPT
Sbjct: 253 DEEFCRRL-----KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFS 295
Query: 425 HVLKLL 430
+++ L
Sbjct: 296 ELVEHL 301
>pdb|2PVF|A Chain A, Crystal Structure Of Tyrosine Phosphorylated Activated Fgf
Receptor 2 (Fgfr2) Kinase Domain In Complex With Atp
Analog And Substrate Peptide
Length = 334
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 47/225 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR--------NATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEXSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CE-THVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ +T+ + ++ PE R+ T + DV+SFGV++ E+ T
Sbjct: 210 IDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254
>pdb|3CLY|A Chain A, Crystal Structure Of Fgf Receptor 2 (Fgfr2) Kinase Domains
Trapped In Trans-Phosphorylation Reaction
Length = 334
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 47/225 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CE-THVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ +T+ + ++ PE R+ T + DV+SFGV++ E+ T
Sbjct: 210 IDXXKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 254
>pdb|2VWU|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWV|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWW|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWX|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWY|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VWZ|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX0|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2VX1|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2X9F|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|2XVD|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
pdb|4BB4|A Chain A, Ephb4 Kinase Domain Inhibitor Complex
Length = 302
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 120/281 (42%), Gaps = 48/281 (17%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGK--TVAVKKFSQAKTQGHR-QFTAEMETLGKVKHQ 239
+ + +++ G FG V + L P K VA+K T+ R +F +E +G+ +H
Sbjct: 18 VKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHP 77
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + +++ E+M NG+LD +LR G V+ + S R LA
Sbjct: 78 NIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEM 137
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLGYIP-----PEYGQ 333
++H+ DFGL+R + + T+ + G IP PE
Sbjct: 138 SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSD-PTETSSLGGKIPIRWTAPEAIA 196
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTV 393
R T+ D +S+G+++ E+++ E + + +++ + Q + D PT
Sbjct: 197 FRKFTSASDAWSYGIVMWEVMSFGERP---YWDMSNQDVINAIEQDYRLPPPPDC--PTS 251
Query: 394 LNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
L+ +ML DC + RP V+ L +++
Sbjct: 252 LHQ----LML-------DCWQKDRNARPRFPQVVSALDKMI 281
>pdb|3RI1|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
pdb|3RI1|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr2 Kinase
In Complex With Arq 069
Length = 313
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 19 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 78
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 79 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 138
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 139 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 198
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 199 IDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-- 256
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D A + M+R DC P+ RPT +++ L
Sbjct: 257 -----LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 302
Query: 431 HEIV 434
I+
Sbjct: 303 DRIL 306
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 96/230 (41%), Gaps = 54/230 (23%)
Query: 179 QQPLLKLTLVDILEDGGFGTVYKATLP------DGKTVAVKKF-SQAKTQGHRQFTAEME 231
+ P + V + +G FG V++A P VAVK +A F E
Sbjct: 43 EYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAA 102
Query: 232 TLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV------------ 279
+ + + N+V LLG C+ + L++EYM G L+ +LR+ + H V
Sbjct: 103 LMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMS-PHTVCSLSHSDLSTRA 161
Query: 280 ---------LDRAKRYKIACSSARGLAFLHQ------------------------DFGLA 306
L A++ IA A G+A+L + DFGL+
Sbjct: 162 RVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLS 221
Query: 307 RLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
R I + + + + + A + ++PPE TT DV+++GV+L E+ +
Sbjct: 222 RNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFS 271
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 101/273 (36%), Gaps = 38/273 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+LT V + G FG V+ + VA+K + F E E + K+ H LV
Sbjct: 9 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQ 67
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATG----------SHEVLDRAKRYKIACSSA 293
L G C LV E+M +G L +LR G +V + + AC
Sbjct: 68 LYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIH 127
Query: 294 RGLAFLH-----------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGD 342
R LA + DFG+ R + + ST + + PE +++ D
Sbjct: 128 RDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSD 187
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMM 402
V+SFGV++ E+ + + E + F+ K + A
Sbjct: 188 VWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLYKPRLAST--------------- 232
Query: 403 LKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
+ +I C + P RP +L+ L EI +
Sbjct: 233 -HVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264
>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|B Chain B, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|C Chain C, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|D Chain D, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|E Chain E, Aurora-2 T287d T288d Complexed With Pha-680632
pdb|2BMC|F Chain F, Aurora-2 T287d T288d Complexed With Pha-680632
Length = 306
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 45 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 104
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 105 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 161
Query: 305 LARLI--SACETHVST-------------DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ D+ GTL Y+PPE + RM + D++S GV+
Sbjct: 162 PENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 221
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 222 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 268
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 269 -----HNPSQRPMLREVLE 282
>pdb|1GJO|A Chain A, The Fgfr2 Tyrosine Kinase Domain
pdb|1OEC|A Chain A, Fgfr2 Kinase Domain
Length = 316
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 80/305 (26%), Positives = 129/305 (42%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 22 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 81
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 82 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 141
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 142 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 201
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 202 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 259
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 260 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 304
Query: 430 LHEIV 434
L I+
Sbjct: 305 LDRIL 309
>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form)
Length = 285
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 24 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 83
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G + L+ + E ++A C S R +H+D
Sbjct: 84 DATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 140
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 141 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 200
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 201 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 247
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 248 -----HNPSQRPMLREVLE 261
>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|3R22|A Chain A, Design, Synthesis, And Biological Evaluation Of
Pyrazolopyridine- Sulfonamides As Potent
Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I)
pdb|4DHF|A Chain A, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
pdb|4DHF|B Chain B, Structure Of Aurora A Mutant Bound To Biogenidec Cpd 15
Length = 271
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 22 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 81
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 82 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 138
Query: 305 LARLI--SACETHVST-------------DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ D+ GTL Y+PPE + RM + D++S GV+
Sbjct: 139 PENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 198
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 199 CYEFLVGK----PPFE----ANTYQETYKRISRVE---FTFPDFVTEGARDLISRLLK-- 245
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 246 -----HNPSQRPMLREVLE 259
>pdb|3B2T|A Chain A, Structure Of Phosphotransferase
pdb|3B2T|B Chain B, Structure Of Phosphotransferase
Length = 311
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 78/304 (25%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 17 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 76
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 77 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 136
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 137 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLTARNVLVTENNVMKIADFGLARDINN 196
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 197 IDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE-- 254
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D A + M+R DC P+ RPT +++ L
Sbjct: 255 -----LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVEDL 300
Query: 431 HEIV 434
I+
Sbjct: 301 DRIL 304
>pdb|2WQB|A Chain A, Structure Of The Tie2 Kinase Domain In Complex With A
Thiazolopyrimidine Inhibitor
Length = 324
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 189 DILEDGGFGTVYKATLP-DG--KTVAVKKFSQ-AKTQGHRQFTAEMETLGKVKHQ-NLVL 243
D++ +G FG V KA + DG A+K+ + A HR F E+E L K+ H N++
Sbjct: 28 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIIN 87
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRN------------ATGSHEVLDRAKRYKIACS 291
LLG C L EY +G+L +LR A + L + A
Sbjct: 88 LLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAAD 147
Query: 292 SARGL------AFLHQDFGLARLISACETHVS------------TDIAGTLGYIPPEYG- 332
ARG+ F+H++ AR I E +V+ + T+G +P +
Sbjct: 148 VARGMDYLSQKQFIHRNLA-ARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMA 206
Query: 333 ----QSRMSTTRGDVYSFGVILLELVT 355
+ TT DV+S+GV+L E+V+
Sbjct: 207 IESLNYSVYTTNSDVWSYGVLLWEIVS 233
>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A
Diaminopyrimidine
Length = 281
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 112/259 (43%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 20 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 79
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 80 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 136
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T ++GTL Y+PPE + RM + D++S GV+
Sbjct: 137 PENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVL 196
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 197 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 243
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 244 -----HNPSQRPMLREVLE 257
>pdb|3JY9|A Chain A, Janus Kinase 2 Inhibitors
Length = 311
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 40/221 (18%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTA 228
N++ F++ LK + L G FG+V L D G+ VAVKK + + R F
Sbjct: 21 NMTQFEERHLKF--LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 78
Query: 229 EMETLGKVKHQNLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRY 286
E+E L ++H N+V G C S L L+ EY+ GSL +L+ E +D K
Sbjct: 79 EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLL 135
Query: 287 KIACSSARGLAFL------HQ------------------DFGLARLISACETHVSTDIAG 322
+ +G+ +L H+ DFGL +++ + G
Sbjct: 136 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 195
Query: 323 ---TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
Y P +S+ S DV+SFGV+L EL T E +
Sbjct: 196 ESPIFWYAPESLTESKFSVA-SDVWSFGVVLYELFTYIEKS 235
>pdb|2PSQ|A Chain A, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
pdb|2PSQ|B Chain B, Crystal Structure Of Unphosphorylated Unactivated Wild
Type Fgf Receptor 2 (Fgfr2) Kinase Domain
Length = 370
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 102/225 (45%), Gaps = 47/225 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 76 WEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 135
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ EY G+L +LR + + V
Sbjct: 136 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRV 195
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 196 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 255
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ + +T+ + ++ PE R+ T + DV+SFGV++ E+ T
Sbjct: 256 IDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFT 300
>pdb|3IO7|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3IOK|A Chain A, 2-Aminopyrazolo[1,5-A]pyrimidines As Potent And Selective
Inhibitors Of Jak2
pdb|3KCK|A Chain A, A Novel Chemotype Of Kinase Inhibitors
Length = 313
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 94/221 (42%), Gaps = 40/221 (18%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTA 228
N++ F++ LK + L G FG+V L D G+ VAVKK + + R F
Sbjct: 21 NMTQFEERHLKF--LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFER 78
Query: 229 EMETLGKVKHQNLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRY 286
E+E L ++H N+V G C S L L+ EY+ GSL +L+ E +D K
Sbjct: 79 EIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLL 135
Query: 287 KIACSSARGLAFL------HQ------------------DFGLARLISACETHVSTDIAG 322
+ +G+ +L H+ DFGL +++ + G
Sbjct: 136 QYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPG 195
Query: 323 ---TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
Y P +S+ S DV+SFGV+L EL T E +
Sbjct: 196 ESPIFWYAPESLTESKFSVA-SDVWSFGVVLYELFTYIEKS 235
>pdb|2ZV7|A Chain A, Lyn Tyrosine Kinase Domain, Apo Form
pdb|2ZV8|A Chain A, Lyn Tyrosine Kinase Domain-Amp-Pnp Complex
pdb|2ZV9|A Chain A, Lyn Tyrosine Kinase Domain-Pp2 Complex
pdb|2ZVA|A Chain A, Lyn Tyrosine Kinase Domain-dasatinib Complex
Length = 279
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 27/202 (13%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P + LV L G FG V+ + VAVK T + F E + ++
Sbjct: 7 WEIPRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQ 65
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H LV L + +E ++ E+M GSL +L++ G +L K + A G+A
Sbjct: 66 HDKLVRLYAVVTKEEPIYIITEFMAKGSLLDFLKSDEGGKVLL--PKLIDFSAQIAEGMA 123
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
++ + DFGLAR+I E + + PE
Sbjct: 124 YIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAIN 183
Query: 334 SRMSTTRGDVYSFGVILLELVT 355
T + +V+SFG++L E+VT
Sbjct: 184 FGCFTIKSNVWSFGILLYEIVT 205
>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine-
Threonine Kinase
Length = 297
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 36 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 95
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 96 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 152
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 153 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 212
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 213 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 259
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 260 -----HNPSQRPMLREVLE 273
>pdb|1OL6|A Chain A, Structure Of Unphosphorylated D274n Mutant Of Aurora-a
Length = 282
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 21 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 80
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 81 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 137
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 138 PENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 197
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 198 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 244
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 245 -----HNPSQRPMLREVLE 258
>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
Gleevec
pdb|3HMI|A Chain A, The Crystal Structure Of Human Abl2 In Complex With
5-Amino-3-{[4-
(Aminosulfonyl)phenyl]amino}-N-(2,
6-Difluorophenyl)-1h-1,2,4- Triazole-1-Carbothioamide
pdb|2XYN|A Chain A, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|B Chain B, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
pdb|2XYN|C Chain C, Human Abl2 In Complex With Aurora Kinase Inhibitor Vx-680
Length = 292
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/289 (24%), Positives = 112/289 (38%), Gaps = 52/289 (17%)
Query: 159 NLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQ 217
NLY S R +I+M + L G +G VY TVAVK +
Sbjct: 18 NLYFQSMDKWEMERTDITMKHK----------LGGGQYGEVYVGVWKKYSLTVAVKTLKE 67
Query: 218 AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH 277
T +F E + ++KH NLV LLG C+ + +V EYM G+L +LR
Sbjct: 68 -DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTLEPPFYIVTEYMPYGNLLDYLREC-NRE 125
Query: 278 EV-----LDRAKRYKIACSSARGLAFLHQ------------------DFGLARLISACET 314
EV L A + A F+H+ DFGL+RL++
Sbjct: 126 EVTAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHVVKVADFGLSRLMTGDTY 185
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVG 374
+ + PE + + DV++FGV+L E+ T P + +L+
Sbjct: 186 TAHAGAKFPIKWTAPESLAYNTFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYDLLE 245
Query: 375 WVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTM 423
+ + +Q + G P + +++R C +PA RP+
Sbjct: 246 ---KGYRMEQPE----------GCPPKVYELMRA---CWKWSPADRPSF 278
>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626
pdb|2J4Z|B Chain B, Structure Of Aurora-2 In Complex With Pha-680626
Length = 306
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 45 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 104
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 105 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 161
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 162 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 221
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 222 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 268
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 269 -----HNPSQRPMLREVLE 282
>pdb|2J50|A Chain A, Structure Of Aurora-2 In Complex With Pha-739358
pdb|2J50|B Chain B, Structure Of Aurora-2 In Complex With Pha-739358
Length = 280
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
pdb|3QRJ|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain T315i
Mutant In Complex With Dcc-2036
Length = 277
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 167 SKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQ 225
S P N ++ +T+ L G +G VY+ TVAVK + T +
Sbjct: 2 SMDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEE 60
Query: 226 FTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----L 280
F E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L
Sbjct: 61 FLKEAAVMKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC-NRQEVNAVVLL 119
Query: 281 DRAKRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAG 322
A + A F+H+ DFGL+RL++
Sbjct: 120 YMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 179
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ + PE + + DV++FGV+L E+ T
Sbjct: 180 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
pdb|2HIW|B Chain B, Crystal Structure Of Inactive Conformation Abl Kinase
Catalytic Domain Complexed With Type Ii Inhibitor
Length = 287
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 26/211 (12%)
Query: 169 GPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFT 227
G + N ++ +T+ L G +G VY+ TVAVK + T +F
Sbjct: 1 GAMDPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFL 59
Query: 228 AEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDR 282
E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L
Sbjct: 60 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYM 118
Query: 283 AKRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTL 324
A + A F+H+ DFGL+RL++ +
Sbjct: 119 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 178
Query: 325 GYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ PE + + DV++FGV+L E+ T
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209
>pdb|4AW5|A Chain A, Complex Of The Ephb4 Kinase Domain With An Oxindole
Inhibitor
Length = 291
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 62/280 (22%), Positives = 122/280 (43%), Gaps = 46/280 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGK--TVAVKKFSQAKTQGHR-QFTAEMETLGKVKHQ 239
+ + +++ G FG V + L P K VA+K T+ R +F +E +G+ +H
Sbjct: 16 VKIEEVIGAGEFGEVCRGRLKAPGKKESCVAIKTLKGGYTERQRREFLSEASIMGQFEHP 75
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + +++ E+M NG+LD +LR G V+ + S R LA
Sbjct: 76 NIIRLEGVVTNSMPVMILTEFMENGALDSFLRLNDGQFTVIQLVGMLRGIASGMRYLAEM 135
Query: 298 -FLHQ------------------DFGLARLI--SACETHVSTDIAGTLG--YIPPEYGQS 334
++H+ DFGL+R + ++ + ++ + G + + PE
Sbjct: 136 SYVHRDLAARNILVNSNLVCKVSDFGLSRFLEENSSDPTYTSSLGGKIPIRWTAPEAIAF 195
Query: 335 RMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVL 394
R T+ D +S+G+++ E+++ E + + +++ + Q + D PT L
Sbjct: 196 RKFTSASDAWSYGIVMWEVMSFGERP---YWDMSNQDVINAIEQDYRLPPPPDC--PTSL 250
Query: 395 NAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
+ +ML DC + RP V+ L +++
Sbjct: 251 HQ----LML-------DCWQKDRNARPRFPQVVSALDKMI 279
>pdb|2XNE|A Chain A, Structure Of Aurora-A Bound To An Imidazopyrazine
Inhibitor
Length = 272
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 22 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 81
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 82 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 138
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 139 PENLLLGSAGELKIANFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 198
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 199 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 245
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 246 -----HNPSQRPMLREVLE 259
>pdb|2XNG|A Chain A, Structure Of Aurora-A Bound To A Selective Imidazopyrazine
Inhibitor
Length = 283
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 22 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 81
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 82 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 138
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 139 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 198
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 199 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 245
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 246 -----HNPSQRPMLREVLE 259
>pdb|3KMU|A Chain A, Crystal Structure Of The IlkALPHA-Parvin Core Complex
(Apo)
Length = 271
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 71/279 (25%), Positives = 111/279 (39%), Gaps = 46/279 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVK--KFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+L + L + G ++K G + VK K T+ R F E L H N+
Sbjct: 11 QLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNV 69
Query: 242 VLLLGYCSFDE--EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
+ +LG C L+ + GSL L G++ V+D+++ K A ARG AFL
Sbjct: 70 LPVLGACQSPPAPHPTLITHWXPYGSLYNVLHE--GTNFVVDQSQAVKFALDXARGXAFL 127
Query: 300 HQ-----------------DFGLARLISACETHVSTDIAGTL---GYIPPEYGQSRMSTT 339
H D IS + S G ++ PE Q + T
Sbjct: 128 HTLEPLIPRHALNSRSVXIDEDXTARISXADVKFSFQSPGRXYAPAWVAPEALQKKPEDT 187
Query: 340 R---GDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNA 396
D +SF V+L ELVT + P A+L ++ + A + L PT+
Sbjct: 188 NRRSADXWSFAVLLWELVTREVPF---------ADLSN---XEIGXKVALEGLRPTI-PP 234
Query: 397 GSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIVD 435
G P + K+ +I C ++PA RP ++ +L + D
Sbjct: 235 GISPHVSKLXKI---CXNEDPAKRPKFDXIVPILEKXQD 270
>pdb|3E5A|A Chain A, Crystal Structure Of Aurora A In Complex With Vx-680 And
Tpx2
Length = 268
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRTXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|2X6D|A Chain A, Aurora-A Bound To An Inhibitor
pdb|2X6E|A Chain A, Aurora-A Bound To An Inhibitor
Length = 285
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 24 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 83
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 84 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 140
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 141 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 200
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 201 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 247
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 248 -----HNPSQRPMLREVLE 261
>pdb|3O50|A Chain A, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O50|B Chain B, Crystal Structure Of Benzamide 9 Bound To Auroraa
pdb|3O51|A Chain A, Crystal Structure Of Anthranilamide 10 Bound To Auroraa
pdb|3EFW|A Chain A, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
pdb|3EFW|B Chain B, Structure Of Auroraa With Pyridyl-Pyrimidine Urea
Inhibitor
Length = 267
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 18 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 77
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 78 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 134
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 135 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 194
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 195 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 241
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 242 -----HNPSQRPMLREVLE 255
>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK6|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 173 INISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEME 231
+++ ++ +T+ L G FG VY+ TVAVK + T +F E
Sbjct: 1 MSLDKWEMERTDITMKHKLGGGQFGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAA 59
Query: 232 TLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRY 286
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 60 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQI 118
Query: 287 KIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIP 328
A F+H+ DFGL+RL++ + +
Sbjct: 119 SSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTA 178
Query: 329 PEYGQSRMSTTRGDVYSFGVILLELVT 355
PE + + DV++FGV+L E+ T
Sbjct: 179 PESLAYNKFSIKSDVWAFGVLLWEIAT 205
>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRI|B Chain B, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dcc- 2036
pdb|3QRK|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In
Complex With Dp- 987
Length = 277
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 87/213 (40%), Gaps = 26/213 (12%)
Query: 167 SKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQ 225
S P N ++ +T+ L G +G VY+ TVAVK + T +
Sbjct: 2 SMDPSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEE 60
Query: 226 FTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----L 280
F E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L
Sbjct: 61 FLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLL 119
Query: 281 DRAKRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAG 322
A + A F+H+ DFGL+RL++
Sbjct: 120 YMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKF 179
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ + PE + + DV++FGV+L E+ T
Sbjct: 180 PIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2F|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2H|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G2I|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
Length = 287
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 26/211 (12%)
Query: 169 GPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFT 227
G + N ++ +T+ L G +G VY+ TVAVK + T +F
Sbjct: 1 GHMSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFL 59
Query: 228 AEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDR 282
E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L
Sbjct: 60 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYM 118
Query: 283 AKRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTL 324
A + A F+H+ DFGL+RL++ +
Sbjct: 119 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPI 178
Query: 325 GYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ PE + + DV++FGV+L E+ T
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209
>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
pdb|2GQG|B Chain B, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To
Activated Abl Kinase Domain
Length = 278
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 170 PLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTA 228
P N ++ +T+ L G +G VY+ TVAVK + T +F
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLK 63
Query: 229 EMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRA 283
E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A
Sbjct: 64 EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMA 122
Query: 284 KRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLG 325
+ A F+H+ DFGL+RL++ +
Sbjct: 123 TQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIK 182
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ PE + + DV++FGV+L E+ T
Sbjct: 183 WTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase
pdb|2NP8|A Chain A, Structural Basis For The Inhibition Of Aurora A Kinase By
A Novel Class Of High Affinity Disubstituted Pyrimidine
Inhibitors
pdb|2X81|A Chain A, Structure Of Aurora A In Complex With Mln8054
pdb|3MYG|A Chain A, Aurora A Kinase Complexed With Sch 1473759
pdb|3VAP|A Chain A, Synthesis And Sar Studies Of Imidazo-[1,2-A]-Pyrazine
Aurora Kinase Inhibitors With Improved Off Target Kinase
Selectivity
Length = 272
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 45/262 (17%)
Query: 191 LEDGGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLG 246
L G FG VY A K + A+K +A+ + Q E+E ++H N++ L G
Sbjct: 20 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 79
Query: 247 YCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQ 301
Y L+ EY G++ L+ + E ++A C S R +H+
Sbjct: 80 YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHR 136
Query: 302 DFGLARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSF 346
D L+ SA E ++ T + GTL Y+PPE + RM + D++S
Sbjct: 137 DIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSL 196
Query: 347 GVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKML 406
GV+ E + K P F+ AN ++++ + + P + G++ ++ ++L
Sbjct: 197 GVLCYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLL 245
Query: 407 RIAADCVADNPATRPTMLHVLK 428
+ NP+ RP + VL+
Sbjct: 246 K-------HNPSQRPMLREVLE 260
>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPL|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 537
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 250 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 308
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 309 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN-RQEVNAVVLLYMATQIS 367
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 368 SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 427
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 428 ESLAYNKFSIKSDVWAFGVLLWEIAT 453
>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|B Chain B, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|C Chain C, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|2G1T|D Chain D, A Src-Like Inactive Conformation In The Abl Tyrosine
Kinase Domain
pdb|3UE4|A Chain A, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
pdb|3UE4|B Chain B, Structural And Spectroscopic Analysis Of The Kinase
Inhibitor Bosutinib Binding To The Abl Tyrosine Kinase
Domain
Length = 287
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 87/211 (41%), Gaps = 26/211 (12%)
Query: 169 GPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFT 227
G + N ++ +T+ L G +G VY+ TVAVK + T +F
Sbjct: 1 GHMSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFL 59
Query: 228 AEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDR 282
E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L
Sbjct: 60 KEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYM 118
Query: 283 AKRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTL 324
A + A F+H+ DFGL+RL++ +
Sbjct: 119 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPI 178
Query: 325 GYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ PE + + DV++FGV+L E+ T
Sbjct: 179 KWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 209
>pdb|2W1D|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1E|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1F|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 22 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 81
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 82 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 138
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 139 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 198
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 199 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 245
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 246 -----HNPSQRPMLREVLE 259
>pdb|2FB8|A Chain A, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
pdb|2FB8|B Chain B, Structure Of The B-Raf Kinase Domain Bound To Sb-590885
Length = 281
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 8 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 67
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 68 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 123
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 124 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 182
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEP 359
RM + + DVY+FG++L EL+T + P
Sbjct: 183 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 213
>pdb|2FO0|A Chain A, Organization Of The Sh3-Sh2 Unit In Active And Inactive
Forms Of The C-Abl Tyrosine Kinase
Length = 495
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 208 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 266
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 267 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN-RQEVNAVVLLYMATQIS 325
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 326 SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 385
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 386 ESLAYNKFSIKSDVWAFGVLLWEIAT 411
>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
Length = 495
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 211 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 269
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 270 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN-RQEVSAVVLLYMATQIS 328
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 329 SAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 388
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 389 ESLAYNKFSIKSDVWAFGVLLWEIAT 414
>pdb|3D4Q|A Chain A, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3D4Q|B Chain B, Pyrazole-Based Inhibitors Of B-Raf Kinase
pdb|3PSB|A Chain A, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PSB|B Chain B, Furo[2,3-C]pyridine-Based Indanone Oximes As Potent And
Selective B- Raf Inhibitors
pdb|3PPJ|A Chain A, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPJ|B Chain B, Human B-Raf Kinase In Complex With A Furopyridine
Inhibitor
pdb|3PPK|A Chain A, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PPK|B Chain B, Human B-Raf Kinase In Complex With A Non-Oxime
Furopyridine Inhibitor
pdb|3PRF|A Chain A, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRF|B Chain B, Crystal Structure Of Human B-Raf Kinase Domain In Complex
With A Non- Oxime Furopyridine Inhibitor
pdb|3PRI|A Chain A, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3PRI|B Chain B, Crystal Structure Of Human B-Raf Kinase In Complex With A
Non-Oxime Furopyridine Inhibitor
pdb|3Q4C|A Chain A, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3Q4C|B Chain B, Crystal Structure Of Wild Type Braf Kinase Domain In
Complex With Organometallic Inhibitor Cns292
pdb|3PSD|A Chain A, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3PSD|B Chain B, Non-Oxime Pyrazole Based Inhibitors Of B-Raf Kinase
pdb|3SKC|A Chain A, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3SKC|B Chain B, Human B-Raf Kinase In Complex With An Amide Linked
Pyrazolopyridine Inhibitor
pdb|3TV4|A Chain A, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV4|B Chain B, Human B-Raf Kinase Domain In Complex With An Bromopyridine
Benzamide Inhibitor
pdb|3TV6|A Chain A, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|3TV6|B Chain B, Human B-Raf Kinase Domain In Complex With A
Methoxypyrazolopyridinyl Benzamide Inhibitor
pdb|4E26|A Chain A, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E26|B Chain B, Braf In Complex With An Organic Inhibitor 7898734
pdb|4E4X|A Chain A, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4E4X|B Chain B, Crystal Structure Of B-Raf Kinase Domain In Complex With A
Dihydropyrido[2,3-D]pyrimidinone-Based Inhibitor
pdb|4G9C|A Chain A, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
pdb|4G9C|B Chain B, Human B-Raf Kinase Domain Bound To A Type Ii
Pyrazolopyridine Inhibitor
Length = 307
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 50/281 (17%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 31 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 90
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 91 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 146
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 147 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 205
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADD 387
RM + + DVY+FG++L EL+T + P + +VG +
Sbjct: 206 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY---------- 254
Query: 388 VLDPTVLNAGSK-PMMLKMLRIAADCVADNPATRPTMLHVL 427
L P + S P +K R+ A+C+ RP +L
Sbjct: 255 -LSPDLSKVRSNCPKAMK--RLMAECLKKKRDERPLFPQIL 292
>pdb|2QO7|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Dephosphorylated, Amp-Pnp Bound
pdb|2QOQ|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Base, Amp-Pnp
Bound Structure
Length = 373
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V E M NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 167 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|3II5|A Chain A, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
pdb|3II5|B Chain B, The Complex Of Wild-Type B-Raf With Pyrazolo Pyrimidine
Inhibitor
Length = 306
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 116/281 (41%), Gaps = 50/281 (17%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 30 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 89
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 90 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 145
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 146 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 204
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADD 387
RM + + DVY+FG++L EL+T + P + +VG +
Sbjct: 205 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY---------- 253
Query: 388 VLDPTVLNAGSK-PMMLKMLRIAADCVADNPATRPTMLHVL 427
L P + S P +K R+ A+C+ RP +L
Sbjct: 254 -LSPDLSKVRSNCPKAMK--RLMAECLKKKRDERPLFPQIL 291
>pdb|4H58|A Chain A, Braf In Complex With Compound 3
pdb|4H58|B Chain B, Braf In Complex With Compound 3
pdb|4H58|C Chain C, Braf In Complex With Compound 3
Length = 275
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 3 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 62
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 63 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 118
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 119 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 177
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEP 359
RM + + DVY+FG++L EL+T + P
Sbjct: 178 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208
>pdb|4DBN|A Chain A, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
pdb|4DBN|B Chain B, Crystal Structure Of The Kinase Domain Of Human B-Raf With
A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 284
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 8 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 67
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 68 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 123
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 124 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 182
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEP 359
RM + + DVY+FG++L EL+T + P
Sbjct: 183 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 213
>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
pdb|2E2B|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Inno-406
Length = 293
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 170 PLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTA 228
P N ++ +T+ L G +G VY+ TVAVK + T +F
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLK 63
Query: 229 EMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRA 283
E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A
Sbjct: 64 EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMA 122
Query: 284 KRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLG 325
+ A F+H+ DFGL+RL++ +
Sbjct: 123 TQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK 182
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ PE + + DV++FGV+L E+ T
Sbjct: 183 WTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
pdb|2V7A|B Chain B, Crystal Structure Of The T315i Abl Mutant In Complex With
The Inhibitor Pha-739358
Length = 286
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 5 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 63
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 64 MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQIS 122
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 123 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAP 182
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 183 ESLAYNKFSIKSDVWAFGVLLWEIAT 208
>pdb|3GQI|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 128/308 (41%), Gaps = 71/308 (23%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 23 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEFSFNPSHN 142
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 143 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIH- 201
Query: 312 CETHVSTDIAGTLGYIP-----PEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQE 366
H+ T G +P PE R+ T + DV+SFGV+L E+ T P
Sbjct: 202 ---HIDXXKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPV 258
Query: 367 KEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHV 426
+E +F+ +K+ D P+ N ++ M M+R DC P+ RPT +
Sbjct: 259 EE-------LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQL 302
Query: 427 LKLLHEIV 434
++ L IV
Sbjct: 303 VEDLDRIV 310
>pdb|3Q96|A Chain A, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
pdb|3Q96|B Chain B, B-Raf Kinase Domain In Complex With A
Tetrahydronaphthalene Inhibitor
Length = 282
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 5 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 64
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 65 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 120
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 121 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 179
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEP 359
RM + + DVY+FG++L EL+T + P
Sbjct: 180 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 210
>pdb|3CJF|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
3,4,5-Trimethoxy Aniline Containing Pyrimidine
Length = 309
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 80/306 (26%), Positives = 125/306 (40%), Gaps = 65/306 (21%)
Query: 171 LRINISMFQQPLLKLTLVDILEDGGFGTVYKA------TLPDGKTVAVKKFSQAKTQG-H 223
L + S ++ P +L L L G FG V +A +TVAVK + T H
Sbjct: 15 LPYDASKWEFPRDRLNLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEH 74
Query: 224 RQFTAEMETLGKVKHQ-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLD 281
R +E++ L + H N+V LLG C+ L+V E+ G+L +LR + +E +
Sbjct: 75 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLR--SKRNEFVP 132
Query: 282 RAKRYK----------IACSSARGLAFL------HQD------------------FGLAR 307
YK + A+G+ FL H+D FGLAR
Sbjct: 133 YKDLYKDFLTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKIXDFGLAR 192
Query: 308 LISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEF 364
I +V D L ++ PE R+ T + DV+SFGV+L E+ + A G +
Sbjct: 193 DIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI 252
Query: 365 QEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTML 424
E+ L ++ + +A D P +M + DC P+ RPT
Sbjct: 253 DEEFXRRL-----KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFS 295
Query: 425 HVLKLL 430
+++ L
Sbjct: 296 ELVEHL 301
>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1FPU|B Chain B, Crystal Structure Of Abl Kinase Domain In Complex With A
Small Molecule Inhibitor
pdb|1IEP|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1IEP|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Sti-571.
pdb|1M52|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1M52|B Chain B, Crystal Structure Of The C-Abl Kinase Domain In Complex
With Pd173955
pdb|1OPJ|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|1OPJ|B Chain B, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine
Kinase
pdb|2HZN|A Chain A, Abl Kinase Domain In Complex With Nvp-Afg210
pdb|3K5V|A Chain A, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3K5V|B Chain B, Structure Of Abl Kinase In Complex With Imatinib And Gnf-2
pdb|3MS9|A Chain A, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MS9|B Chain B, Abl Kinase In Complex With Imatinib And A Fragment (Frag1)
I Myristate Pocket
pdb|3MSS|A Chain A, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|B Chain B, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|C Chain C, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
pdb|3MSS|D Chain D, Abl Kinase In Complex With Imatinib And Fragment (Frag2)
In The Myristate Site
Length = 293
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/210 (25%), Positives = 86/210 (40%), Gaps = 26/210 (12%)
Query: 170 PLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTA 228
P N ++ +T+ L G +G VY+ TVAVK + T +F
Sbjct: 5 PSSPNYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLK 63
Query: 229 EMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRA 283
E + ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A
Sbjct: 64 EAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMA 122
Query: 284 KRYKIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLG 325
+ A F+H+ DFGL+RL++ +
Sbjct: 123 TQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIK 182
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ PE + + DV++FGV+L E+ T
Sbjct: 183 WTAPESLAYNKFSIKSDVWAFGVLLWEIAT 212
>pdb|2QOB|A Chain A, Human Epha3 Kinase Domain, Base Structure
Length = 344
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 90/202 (44%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 18 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 77
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V E M NGSLD +LR V+ + S + L+
Sbjct: 78 NIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 137
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRM 336
++H+ DFGL+R++ T G + + PE R
Sbjct: 138 GYVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 197
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 198 FTSASDVWSYGIVLWEVMSYGE 219
>pdb|2Q0B|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
pdb|2Q0B|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565a Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 128/305 (41%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ Y G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVAYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|4BBE|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBE|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|A Chain A, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|B Chain B, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|C Chain C, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
pdb|4BBF|D Chain D, Aminoalkylpyrimidine Inhibitor Complexes With Jak2
Length = 298
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 88/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 13 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 72
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 73 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 129
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + + G Y P
Sbjct: 130 YLGTKRYIHRNLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPES 189
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 190 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 218
>pdb|3VNT|A Chain A, Crystal Structure Of The Kinase Domain Of Human Vegfr2
With A [1, 3]thiazolo[5,4-B]pyridine Derivative
Length = 318
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 35 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 91
Query: 239 Q-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 92 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKEAPEDLYKDFLTLEH 151
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I +V D
Sbjct: 152 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 211
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 212 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 266
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 267 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 307
>pdb|1BYG|A Chain A, Kinase Domain Of Human C-Terminal Src Kinase (Csk) In
Complex With Inhibitor Staurosporine
Length = 278
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 116/272 (42%), Gaps = 44/272 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+L L+ + G FG V G VAVK T + F AE + +++H NLV
Sbjct: 22 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQ 78
Query: 244 LLGYCSFDEEK---LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA----RGL 296
LLG EEK +V EYM GSL +LR+ S D ++ + A G
Sbjct: 79 LLGVIV--EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 136
Query: 297 AFLHQDFGLARLISACETHV-------------STDIAGTL--GYIPPEYGQSRMSTTRG 341
F+H+D AR + E +V ST G L + PE + + +T+
Sbjct: 137 NFVHRDLA-ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKS 195
Query: 342 DVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPM 401
DV+SFG++L E+ + P K+ V +++K D D G P
Sbjct: 196 DVWSFGILLWEIYSFGRVPYPRIPLKD-------VVPRVEKGYKMDAPD------GCPPA 242
Query: 402 MLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
+ ++++ +C + A RP+ L + + L I
Sbjct: 243 VYEVMK---NCWHLDAAMRPSFLQLREQLEHI 271
>pdb|2WQE|A Chain A, Structure Of S155r Aurora-A Somatic Mutant
Length = 262
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/259 (24%), Positives = 111/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 16 GKFGNVYLAREKQRKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 75
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 76 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 132
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + RM + D++S GV+
Sbjct: 133 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 192
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 193 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 239
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 240 -----HNPSQRPMLREVLE 253
>pdb|3D7U|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
pdb|3D7U|C Chain C, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 263
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 116/272 (42%), Gaps = 44/272 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+L L+ + G FG V G VAVK T + F AE + +++H NLV
Sbjct: 7 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQ 63
Query: 244 LLGYCSFDEEK---LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA----RGL 296
LLG EEK +V EYM GSL +LR+ S D ++ + A G
Sbjct: 64 LLGVIV--EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 121
Query: 297 AFLHQDFGLARLISACETHV-------------STDIAGTL--GYIPPEYGQSRMSTTRG 341
F+H+D AR + E +V ST G L + PE + + +T+
Sbjct: 122 NFVHRDLA-ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKS 180
Query: 342 DVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPM 401
DV+SFG++L E+ + P K+ V +++K D D G P
Sbjct: 181 DVWSFGILLWEIYSFGRVPYPRIPLKD-------VVPRVEKGYKMDAPD------GCPPA 227
Query: 402 MLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
+ ++++ +C + A RP+ L + + L I
Sbjct: 228 VYEVMK---NCWHLDAAMRPSFLQLREQLEHI 256
>pdb|1UWH|A Chain A, The Complex Of Wild Type B-Raf And Bay439006
pdb|1UWH|B Chain B, The Complex Of Wild Type B-Raf And Bay439006
Length = 276
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 36/212 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 3 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 62
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 63 HVNILLFMGY-STAPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 118
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA + S +H ++G++ ++ PE
Sbjct: 119 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEV- 177
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEP 359
RM + + DVY+FG++L EL+T + P
Sbjct: 178 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208
>pdb|3TT0|A Chain A, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
pdb|3TT0|B Chain B, Co-Structure Of Fibroblast Growth Factor Receptor 1 Kinase
Domain With
3-(2,6-Dichloro-3,
5-Dimethoxy-Phenyl)-1-{6-[4-(4-Ethyl-Piperazin-1-
Yl)-Phenylamino]-Pyrimidin-4-Yl}-1-Methyl-Urea (Bgj398)
Length = 382
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 64 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 123
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 124 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 183
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 184 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 243
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 244 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 301
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 302 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 347
Query: 431 HEIV 434
IV
Sbjct: 348 DRIV 351
>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant
Abl Mutant In Complex With The Aurora Kinase Inhibitor
Vx-680
Length = 287
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 5 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 63
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 64 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQIS 122
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 123 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAPAGAKFPIKWTAP 182
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 183 ESLAYNKFSIKSDVWAFGVLLWEIAT 208
>pdb|2XYU|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Vuf 12058
Length = 285
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKATLP-DGK---TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYC 248
G FG V L GK VA+K T R+ F +E +G+ H N++ L G
Sbjct: 19 GEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVV 78
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR---GLAFLHQ---- 301
+ + +++ EYM NGSLD +LR G V+ + S + ++++H+
Sbjct: 79 TKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAA 138
Query: 302 --------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRMSTTRGDVYS 345
DFG++R++ T G + + PE R T+ DV+S
Sbjct: 139 RNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS 198
Query: 346 FGVILLELVTAKE 358
+G+++ E+++ E
Sbjct: 199 YGIVMWEVMSYGE 211
>pdb|4F63|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F63|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 1
pdb|4F64|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F64|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 6
pdb|4F65|A Chain A, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
pdb|4F65|B Chain B, Crystal Structure Of Human Fibroblast Growth Factor
Receptor 1 Kinase Domain In Complex With Compound 8
Length = 309
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 15 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 74
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 75 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 134
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 135 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 194
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 195 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 252
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 253 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 298
Query: 431 HEIV 434
IV
Sbjct: 299 DRIV 302
>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound
With Ppy-A
pdb|3IK3|A Chain A, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
pdb|3IK3|B Chain B, Ap24534, A Pan-Bcr-Abl Inhibitor For Chronic Myeloid
Leukemi Potently Inhibits The T315i Mutant And Overcomes
Mutation-B Resistance
Length = 288
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 62
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 63 MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQIS 121
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 122 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 182 ESLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
pdb|3PYY|B Chain B, Discovery And Characterization Of A Cell-Permeable,
Small-Molecule C- Abl Kinase Activator That Binds To The
Myristoyl Binding Site
Length = 298
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 89/221 (40%), Gaps = 33/221 (14%)
Query: 159 NLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQ 217
NLY S N ++ +T+ L G +G VY+ TVAVK +
Sbjct: 9 NLYFQGSP-------NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE 61
Query: 218 AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH 277
T +F E + ++KH NLV LLG C+ + ++ E+M G+L +LR
Sbjct: 62 -DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQ 119
Query: 278 EV-----LDRAKRYKIACSSARGLAFLHQ------------------DFGLARLISACET 314
EV L A + A F+H+ DFGL+RL++
Sbjct: 120 EVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTY 179
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ + PE + + DV++FGV+L E+ T
Sbjct: 180 TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIAT 220
>pdb|2Y6M|A Chain A, Crystal Structure Of Epha4 Kinase Domain
pdb|2Y6O|A Chain A, Crystal Structure Of Epha4 Kinase Domain In Complex With
Dasatinib
Length = 291
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 85/193 (44%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKATLP-DGK---TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYC 248
G FG V L GK VA+K T R+ F +E +G+ H N++ L G
Sbjct: 25 GEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVV 84
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR---GLAFLHQ---- 301
+ + +++ EYM NGSLD +LR G V+ + S + ++++H+
Sbjct: 85 TKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSYVHRDLAA 144
Query: 302 --------------DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYS 345
DFG++R++ T G + + PE R T+ DV+S
Sbjct: 145 RNILVNSNLVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASDVWS 204
Query: 346 FGVILLELVTAKE 358
+G+++ E+++ E
Sbjct: 205 YGIVMWEVMSYGE 217
>pdb|3D7T|A Chain A, Structural Basis For The Recognition Of C-Src By Its
Inactivator Csk
Length = 269
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 115/272 (42%), Gaps = 44/272 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+L L+ + G FG V G VAVK T + F AE + +++H NLV
Sbjct: 13 ELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDATA--QAFLAEASVMTQLRHSNLVQ 69
Query: 244 LLGYCSFDEEK---LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA----RGL 296
LLG EEK +V EYM GSL +LR+ S D ++ + A G
Sbjct: 70 LLGVIV--EEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGN 127
Query: 297 AFLHQDFGLARLISACETHV-------------STDIAGTL--GYIPPEYGQSRMSTTRG 341
F+H+D AR + E +V ST G L + PE + +T+
Sbjct: 128 NFVHRDLA-ARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREAAFSTKS 186
Query: 342 DVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPM 401
DV+SFG++L E+ + P K+ V +++K D D G P
Sbjct: 187 DVWSFGILLWEIYSFGRVPYPRIPLKD-------VVPRVEKGYKMDAPD------GCPPA 233
Query: 402 MLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
+ ++++ +C + A RP+ L + + L I
Sbjct: 234 VYEVMK---NCWHLDAAMRPSFLQLREQLEHI 262
>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
pdb|3OY3|B Chain B, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound
With A Dfg- Out Inhibitor Ap24589
Length = 284
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/205 (24%), Positives = 85/205 (41%), Gaps = 24/205 (11%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 62
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNA----TGSHEVLDRAKRYKI 288
+ ++KH NLV LLG C+ + ++ E+M G+L +LR + +L A +
Sbjct: 63 MKEIKHPNLVQLLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISS 122
Query: 289 ACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPPE 330
A F+H+ DFGL+RL++ + + PE
Sbjct: 123 AMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPE 182
Query: 331 YGQSRMSTTRGDVYSFGVILLELVT 355
+ + DV++FGV+L E+ T
Sbjct: 183 SLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|3KXX|A Chain A, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|B Chain B, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|C Chain C, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
pdb|3KXX|D Chain D, Structure Of The Mutant Fibroblast Growth Factor Receptor
1
Length = 317
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 23 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQAREPPGLEYSYNPSHN 142
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 143 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 202
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 203 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 260
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 261 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 306
Query: 431 HEIV 434
IV
Sbjct: 307 DRIV 310
>pdb|3JS2|A Chain A, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3JS2|B Chain B, Crystal Structure Of Minimal Kinase Domain Of Fibroblast
Growth Factor Receptor 1 In Complex With 5-(2-Thienyl)
Nicotinic Acid
pdb|3KY2|A Chain A, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
pdb|3KY2|B Chain B, Crystal Structure Of Fibroblast Growth Factor Receptor 1
Kinase Domain
Length = 317
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 23 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 142
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 143 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 202
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 203 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 260
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 261 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 306
Query: 431 HEIV 434
IV
Sbjct: 307 DRIV 310
>pdb|1IR3|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With Peptide Substrate And Atp Analog
pdb|1GAG|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With A Bisubstrate Inhibitor
Length = 306
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 18 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 78 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 137
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 138 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 197
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 253
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 254 PDNCPE----------RVTDLMRM---CWQFNPKMRPTFLEIVNLLKD 288
>pdb|3RHX|B Chain B, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
pdb|3RHX|A Chain A, Crystal Structure Of The Catalytic Domain Of Fgfr1 Kinase
In Complex With Arq 069
Length = 306
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 12 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 71
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 72 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 131
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 132 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 191
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 192 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 249
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 250 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 295
Query: 431 HEIV 434
IV
Sbjct: 296 DRIV 299
>pdb|3GQL|A Chain A, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|B Chain B, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
pdb|3GQL|C Chain C, Crystal Structure Of Activated Receptor Tyrosine Kinase In
Complex With Substrates
Length = 326
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 23 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 82
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 83 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHN 142
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 143 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 202
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 203 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 260
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 261 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 306
Query: 431 HEIV 434
IV
Sbjct: 307 DRIV 310
>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970
pdb|2HZI|B Chain B, Abl Kinase Domain In Complex With Pd180970
pdb|3CS9|A Chain A, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|B Chain B, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|C Chain C, Human Abl Kinase In Complex With Nilotinib
pdb|3CS9|D Chain D, Human Abl Kinase In Complex With Nilotinib
Length = 277
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 8 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 66
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 67 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQIS 125
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 126 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 185
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 186 ESLAYNKFSIKSDVWAFGVLLWEIAT 211
>pdb|3ETA|A Chain A, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
pdb|3ETA|B Chain B, Kinase Domain Of Insulin Receptor Complexed With A Pyrrolo
Pyridine Inhibitor
Length = 317
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 17 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 76
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 77 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 136
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 137 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 196
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 197 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 252
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 253 PDNCPE----------RVTDLMRM---CWQFNPKMRPTFLEIVNLLKD 287
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 123/330 (37%), Gaps = 84/330 (25%)
Query: 169 GPLRINISMF--------QQPLLKLTLVDILEDGGFGTVYKATLPDGK------TVAVKK 214
GPL +++ F + P L L L +G FG V KAT K TVAVK
Sbjct: 1 GPLSLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKM 60
Query: 215 FSQ-AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNA 273
+ A R +E L +V H +++ L G CS D LL+ EY GSL +LR +
Sbjct: 61 LKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRES 120
Query: 274 TG--------------------SHEVLDRAKRYKIACSSARGLAFLHQ------------ 301
L A ++G+ +L +
Sbjct: 121 RKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARN 180
Query: 302 ------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-----SRMSTTRGDVY 344
DFGL+R + +++V + G IP ++ + TT+ DV+
Sbjct: 181 ILVAEGRKMKISDFGLSRDVYEEDSYVKR----SQGRIPVKWMAIESLFDHIYTTQSDVW 236
Query: 345 SFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK 404
SFGV+L E+VT P + NL+ + ++ D+ + +
Sbjct: 237 SFGVLLWEIVTLGGNPYPGIPPERLFNLLK---TGHRMERPDNCSE-------------E 280
Query: 405 MLRIAADCVADNPATRPTMLHVLKLLHEIV 434
M R+ C P RP + K L +++
Sbjct: 281 MYRLMLQCWKQEPDKRPVFADISKDLEKMM 310
>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|2QOH|B Chain B, Crystal Structure Of Abl Kinase Bound With Ppy-a
pdb|3KF4|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KF4|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|A Chain A, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
pdb|3KFA|B Chain B, Structural Analysis Of Dfg-In And Dfg-Out Dual Src-Abl
Inhibitors Sharing A Common Vinyl Purine Template
Length = 288
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 62
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 63 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQIS 121
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 122 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 182 ESLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK7|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 277
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 82/194 (42%), Gaps = 24/194 (12%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+T+ L G +G VY+ TVAVK + T +F E + ++KH NLV
Sbjct: 13 ITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQ 71
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNA----TGSHEVLDRAKRYKIACSSARGLAFL 299
LLG C+ + ++ E+M G+L +LR + +L A + A F+
Sbjct: 72 LLGVCTREPPFYIIIEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFI 131
Query: 300 HQ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRG 341
H+ DFGL+RL++ + + PE + +
Sbjct: 132 HRDLAARNCLVGENHLVKVADFGLSRLMTGDTXTAHAGAKFPIKWTAPESLAYNKFSIKS 191
Query: 342 DVYSFGVILLELVT 355
DV++FGV+L E+ T
Sbjct: 192 DVWAFGVLLWEIAT 205
>pdb|1FGK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGK|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1
pdb|1FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su5402 Inhibitor
pdb|1AGW|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|1AGW|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of
Fibroblast Growth Factor Receptor 1 In Complex With
Su4984 Inhibitor
pdb|2FGI|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
pdb|2FGI|B Chain B, Crystal Structure Of The Tyrosine Kinase Domain Of Fgf
Receptor 1 In Complex With Inhibitor Pd173074
Length = 310
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 16 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 75
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 76 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHN 135
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 136 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 195
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 196 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 253
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 254 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 299
Query: 431 HEIV 434
IV
Sbjct: 300 DRIV 303
>pdb|2Z8C|A Chain A, Phosphorylated Insulin Receptor Tyrosine Kinase In Complex
With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin-2-
Yl]amino}phenyl)acetic Acid
Length = 303
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 15 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 74
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 75 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 134
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 135 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 194
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 195 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 250
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 251 PDNCPE----------RVTDLMRM---CWQFNPKMRPTFLEIVNLLKD 285
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 79/197 (40%), Gaps = 30/197 (15%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
+LT V + G FG V+ + VA+K + F E E + K+ H LV
Sbjct: 8 ELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQ 66
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIAC-SSARGLAFLHQ- 301
L G C LV+E+M +G L +LR G L A+ C G+A+L +
Sbjct: 67 LYGVCLEQAPICLVFEFMEHGCLSDYLRTQRG----LFAAETLLGMCLDVCEGMAYLEEA 122
Query: 302 -----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMST 338
DFG+ R + + ST + + PE +
Sbjct: 123 SVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYS 182
Query: 339 TRGDVYSFGVILLELVT 355
++ DV+SFGV++ E+ +
Sbjct: 183 SKSDVWSFGVLMWEVFS 199
>pdb|2PY3|A Chain A, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
pdb|2PY3|B Chain B, Crystal Strucure Of Fgf Receptor 2 (Fgfr2) Kinase Domain
Harboring The Pathogenic E565g Mutation Responsible For
Pfeiffer Syndrome
Length = 324
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 79/305 (25%), Positives = 128/305 (41%), Gaps = 65/305 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL--------PDGKTVAVKKFSQAKTQGH-RQFTA 228
++ P KLTL L +G FG V A + TVAVK T+ +
Sbjct: 30 WEFPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVS 89
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--------ATGSHEV 279
EME + + KH+N++ LLG C+ D ++ Y G+L +LR + + V
Sbjct: 90 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVGYASKGNLREYLRARRPPGMEYSYDINRV 149
Query: 280 LDRAKRYK--IACSS--ARGLAFL------HQ------------------DFGLARLISA 311
+ +K ++C+ ARG+ +L H+ DFGLAR I+
Sbjct: 150 PEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINN 209
Query: 312 CETHVSTDIAGTL--GYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEG 369
+ + T G L ++ PE R+ T + DV+SFGV++ E+ T P +E
Sbjct: 210 IDYYKKT-TNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEE- 267
Query: 370 ANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
+F+ +K+ D A + M+R DC P+ RPT +++
Sbjct: 268 ------LFKLLKEGHRMDK------PANCTNELYMMMR---DCWHAVPSQRPTFKQLVED 312
Query: 430 LHEIV 434
L I+
Sbjct: 313 LDRIL 317
>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A
Dfg-Out Inhibitor Ap24534
Length = 284
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 62
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 63 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQIS 121
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 122 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 182 ESLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|3EKK|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
pdb|3EKN|A Chain A, Insulin Receptor Kinase Complexed With An Inhibitor
Length = 307
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 19 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 78
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 79 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 138
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 139 EIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 198
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 199 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 254
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 255 PDNCPE----------RVTDLMRM---CWQFNPNMRPTFLEIVNLLKD 289
>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|B Chain B, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|C Chain C, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HYY|D Chain D, Human Abl Kinase Domain In Complex With Imatinib (Sti571,
Glivec)
pdb|2HZ4|A Chain A, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|B Chain B, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
pdb|2HZ4|C Chain C, Abl Kinase Domain Unligated And In Complex With
Tetrahydrostaurosporine
Length = 273
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 62
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 63 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQIS 121
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 122 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 182 ESLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|4EQM|A Chain A, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|B Chain B, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|C Chain C, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|D Chain D, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|E Chain E, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
pdb|4EQM|F Chain F, Structural Analysis Of Staphylococcus Aureus
SerineTHREONINE KINASE Pknb
Length = 294
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 30/203 (14%)
Query: 184 KLTLVDILEDGGFGTVYKA--TLPDGKTVAVKKF---SQAKTQGHRQFTAEMETLGKVKH 238
+ +VD L GG TVY A T+ + K VA+K + K + ++F E+ ++ H
Sbjct: 12 RYKIVDKLGGGGMSTVYLAEDTILNIK-VAIKAIFIPPREKEETLKRFEREVHNSSQLSH 70
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN---------ATGSHEVLDRAKR---- 285
QN+V ++ D+ LV EY+ +L ++ + ++++LD K
Sbjct: 71 QNIVSMIDVDEEDDCYYLVMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDM 130
Query: 286 ---------YKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRM 336
I S + L DFG+A+ +S + + GT+ Y PE +
Sbjct: 131 RIVHRDIKPQNILIDSNKTLKIF--DFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEA 188
Query: 337 STTRGDVYSFGVILLELVTAKEP 359
+ D+YS G++L E++ + P
Sbjct: 189 TDECTDIYSIGIVLYEMLVGEPP 211
>pdb|1RQQ|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|1RQQ|B Chain B, Crystal Structure Of The Insulin Receptor Kinase In
Complex With The Sh2 Domain Of Aps
pdb|2AUH|A Chain A, Crystal Structure Of The Grb14 Bps Region In Complex With
The Insulin Receptor Tyrosine Kinase
pdb|2B4S|B Chain B, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|2B4S|D Chain D, Crystal Structure Of A Complex Between Ptp1b And The
Insulin Receptor Tyrosine Kinase
pdb|3BU3|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide
pdb|3BU5|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Peptide And Atp
pdb|3BU6|A Chain A, Crystal Structure Of The Insulin Receptor Kinase In
Complex With Irs2 Krlb Phosphopeptide
Length = 306
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 18 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 78 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 137
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 138 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIXETDXXRKGGKGLLPVR 197
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 253
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 254 PDNCPE----------RVTDLMRM---CWQFNPNMRPTFLEIVNLLKD 288
>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082
pdb|2HZ0|B Chain B, Abl Kinase Domain In Complex With Nvp-Aeg082
Length = 270
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 26/206 (12%)
Query: 174 NISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEMET 232
N ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 4 NYDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAV 62
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRYK 287
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 63 MKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVNAVVLLYMATQIS 121
Query: 288 IACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIPP 329
A F+H+ DFGL+RL++ + + P
Sbjct: 122 SAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAP 181
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E + + DV++FGV+L E+ T
Sbjct: 182 ESLAYNKFSIKSDVWAFGVLLWEIAT 207
>pdb|1IRK|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The
Human Insulin Receptor
Length = 306
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 18 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 78 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 137
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 138 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 197
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 253
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 254 PDNCPE----------RVTDLMRM---CWQFNPKMRPTFLEIVNLLKD 288
>pdb|1P14|A Chain A, Crystal Structure Of A Catalytic-Loop Mutant Of The
Insulin Receptor Tyrosine Kinase
Length = 306
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 18 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 78 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 137
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 138 EIADGMAYLNAKKFVHRNLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVR 197
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 253
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 254 PDNCPE----------RVTDLMRM---CWQFNPNMRPTFLEIVNLLKD 288
>pdb|3COH|A Chain A, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
pdb|3COH|B Chain B, Crystal Structure Of Aurora-A In Complex With A
Pentacyclic Inhibitor
Length = 268
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 109/258 (42%), Gaps = 43/258 (16%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A + K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKNSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKI----ACSSARGLAFLHQDFGL 305
L+ EY G++ L+ + E R Y A S +H+D
Sbjct: 79 DSTRVYLILEYAPLGTVYRELQKLSKFDE--QRTATYITELANALSYCHSKKVIHRDIKP 136
Query: 306 ARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVIL 350
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 137 ENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVLC 196
Query: 351 LELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAA 410
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 197 YEFLVGK----PPFE----ANTYQDTYKRISRVE---FTFPDFVTEGARDLISRLLK--- 242
Query: 411 DCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 ----HNPSQRPMLREVLE 256
>pdb|1I44|A Chain A, Crystallographic Studies Of An Activation Loop Mutant Of
The Insulin Receptor Tyrosine Kinase
Length = 306
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/288 (23%), Positives = 119/288 (41%), Gaps = 56/288 (19%)
Query: 184 KLTLVDILEDGGFGTVYKATLPD------GKTVAVKKFSQAKTQGHR-QFTAEMETLGKV 236
K+TL+ L G FG VY+ D VAVK +++ + R +F E +
Sbjct: 18 KITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGF 77
Query: 237 KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHE------VLDRAKRYKIAC 290
++V LLG S + L+V E M +G L +LR+ E + ++A
Sbjct: 78 TCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAA 137
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------------- 325
A G+A+L+ + R ++A V+ D +G
Sbjct: 138 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETAYYRKGGKGLLPVR 197
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQ 384
++ PE + + TT D++SFGV+L E+ + A++P +Q ++ +V Q
Sbjct: 198 WMAPESLKDGVFTTSSDMWSFGVVLWEITSLAEQP----YQGLSNEQVLKFVMDGGYLDQ 253
Query: 385 ADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
D+ + + ++R+ C NP RPT L ++ LL +
Sbjct: 254 PDNCPE----------RVTDLMRM---CWQFNPKMRPTFLEIVNLLKD 288
>pdb|2XIR|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Pf-00337210 (N,2-Dimethyl-6-(7-(2-Morpholinoethoxy)
Quinolin-4-Yloxy)benzofuran-3-Carboxamide)
pdb|4AG8|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Axitinib (Ag-013736)
(N-Methyl-2-(3-((E)-2-Pyridin-2-
Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-Benzamide)
Length = 316
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 33 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 89
Query: 239 Q-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I +V D
Sbjct: 150 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 209
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 210 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 264
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 265 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 305
>pdb|2W1I|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1I|B Chain B, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 326
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/236 (27%), Positives = 97/236 (41%), Gaps = 40/236 (16%)
Query: 159 NLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKAT---LPD--GKTVAVK 213
NLY + + + F++ LK + L G FG+V L D G+ VAVK
Sbjct: 19 NLYFQGAMGSAFEDRDPTQFEERHLKF--LQQLGKGNFGSVEMCRYDPLQDNTGEVVAVK 76
Query: 214 KFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLR 271
K + + R F E+E L ++H N+V G C S L L+ EY+ GSL +L+
Sbjct: 77 KLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ 136
Query: 272 NATGSHEVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLAR 307
E +D K + +G+ +L H+ DFGL +
Sbjct: 137 KHK---ERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTK 193
Query: 308 LISACETHVSTDIAG---TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
++ + G Y P +S+ S DV+SFGV+L EL T E +
Sbjct: 194 VLPQDKEXXKVKEPGESPIFWYAPESLTESKFSVA-SDVWSFGVVLYELFTYIEKS 248
>pdb|3C4F|A Chain A, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
pdb|3C4F|B Chain B, Fgfr Tyrosine Kinase Domain In Complex With 3-(3-
Methoxybenzyl)-7-Azaindole
Length = 302
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 130/304 (42%), Gaps = 63/304 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL-------PDGKT-VAVKKF-SQAKTQGHRQFTA 228
++ P +L L L +G FG V A P+ T VAVK S A + +
Sbjct: 8 WELPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLIS 67
Query: 229 EMETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL--RNATG-------SH- 277
EME + + KH+N++ LLG C+ D ++ EY G+L +L R G SH
Sbjct: 68 EMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYCYNPSHN 127
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
E L A ARG+ +L H+ DFGLAR I
Sbjct: 128 PEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHH 187
Query: 312 CETH-VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+ + +T+ + ++ PE R+ T + DV+SFGV+L E+ T P +E
Sbjct: 188 IDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEE-- 245
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
+F+ +K+ D P+ N ++ M M+R DC P+ RPT +++ L
Sbjct: 246 -----LFKLLKEGHRMD--KPS--NCTNELYM--MMR---DCWHAVPSQRPTFKQLVEDL 291
Query: 431 HEIV 434
IV
Sbjct: 292 DRIV 295
>pdb|2WTV|A Chain A, Aurora-A Inhibitor Structure
pdb|2WTV|B Chain B, Aurora-A Inhibitor Structure
pdb|2WTV|C Chain C, Aurora-A Inhibitor Structure
pdb|2WTV|D Chain D, Aurora-A Inhibitor Structure
Length = 285
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 109/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 24 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 83
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G + L+ + E ++A C S R +H+D
Sbjct: 84 DATRVYLILEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 140
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 141 PENLLLGSAGELKIADFGWSVHAPSSRRXXLXGTLDYLPPEMIEGRMHDEKVDLWSLGVL 200
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 201 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 247
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 248 -----HNPSQRPMLREVLE 261
>pdb|4AGC|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Axitinib (Ag-013736)
(N-Methyl-2-(
3-((E)-2-Pyridin-2-Yl-Vinyl)-1h-Indazol-6-Ylsulfanyl)-
Benzamide)
pdb|4AGD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sunitinib (Su11248) (N-2-
Diethylaminoethyl)-5-((Z)-(5-Fluoro-2-Oxo-1h-Indol-3-
Ylidene)methyl)-2,4-Dimethyl-1h-Pyrrole-3-Carboxamide)
pdb|4ASD|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Sorafenib (Bay 43-9006)
pdb|4ASE|A Chain A, Crystal Structure Of Vegfr2 (Juxtamembrane And Kinase
Domains) In Complex With Tivozanib (Av-951)
Length = 353
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 70 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 126
Query: 239 Q-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 127 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 186
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I +V D
Sbjct: 187 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 246
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 247 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 301
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 302 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 342
>pdb|3IDP|A Chain A, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
pdb|3IDP|B Chain B, B-Raf V600e Kinase Domain In Complex With An
Aminoisoquinoline Inhibitor
Length = 300
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 115/281 (40%), Gaps = 50/281 (17%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 23 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 82
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 83 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 138
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA S +H ++G++ ++ PE
Sbjct: 139 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV- 197
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADD 387
RM + + DVY+FG++L EL+T + P + +VG +
Sbjct: 198 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY---------- 246
Query: 388 VLDPTVLNAGSK-PMMLKMLRIAADCVADNPATRPTMLHVL 427
L P + S P +K R+ A+C+ RP +L
Sbjct: 247 -LSPDLSKVRSNCPKAMK--RLMAECLKKKRDERPLFPQIL 284
>pdb|4G9R|A Chain A, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
pdb|4G9R|B Chain B, B-Raf V600e Kinase Domain Bound To A Type Ii
Dihydroquinazoline Inhibitor
Length = 307
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 68/281 (24%), Positives = 115/281 (40%), Gaps = 50/281 (17%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 31 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 90
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 91 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 146
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA S +H ++G++ ++ PE
Sbjct: 147 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV- 205
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADD 387
RM + + DVY+FG++L EL+T + P + +VG +
Sbjct: 206 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIFMVGRGY---------- 254
Query: 388 VLDPTVLNAGSK-PMMLKMLRIAADCVADNPATRPTMLHVL 427
L P + S P +K R+ A+C+ RP +L
Sbjct: 255 -LSPDLSKVRSNCPKAMK--RLMAECLKKKRDERPLFPQIL 292
>pdb|3UGC|A Chain A, Structural Basis Of Jak2 Inhibition By The Type Ii
Inhibtor Nvp-Bbt594
Length = 295
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 71
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 72 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 128
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 129 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPES 188
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 189 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 217
>pdb|3TJC|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJC|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 8
pdb|3TJD|A Chain A, Co-Crystal Structure Of Jak2 With Thienopyridine 19
pdb|3TJD|B Chain B, Co-Crystal Structure Of Jak2 With Thienopyridine 19
Length = 298
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 15 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 74
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 75 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 131
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 132 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 191
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 192 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 220
>pdb|1UWJ|A Chain A, The Complex Of Mutant V599e B-raf And Bay439006
pdb|1UWJ|B Chain B, The Complex Of Mutant V599e B-raf And Bay439006
Length = 276
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 93/212 (43%), Gaps = 36/212 (16%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK 237
++ P ++T+ + G FGTVYK V + + Q + F E+ L K +
Sbjct: 3 WEIPDGQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTR 62
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H N++L +GY S + +V ++ SL L E++ K IA +A+G+
Sbjct: 63 HVNILLFMGY-STKPQLAIVTQWCEGSSLYHHLHIIETKFEMI---KLIDIARQTAQGMD 118
Query: 298 FLHQ------------------------DFGLARLISACE-THVSTDIAGTLGYIPPEYG 332
+LH DFGLA S +H ++G++ ++ PE
Sbjct: 119 YLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEV- 177
Query: 333 QSRMS-----TTRGDVYSFGVILLELVTAKEP 359
RM + + DVY+FG++L EL+T + P
Sbjct: 178 -IRMQDKNPYSFQSDVYAFGIVLYELMTGQLP 208
>pdb|3C7Q|A Chain A, Structure Of Vegfr2 Kinase Domain In Complex With Bibf1120
Length = 316
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/306 (25%), Positives = 121/306 (39%), Gaps = 63/306 (20%)
Query: 171 LRINISMFQQPLLKLTLVDILEDGGFGTVYKA------TLPDGKTVAVKKFSQAKTQG-H 223
L + S ++ P +L L L G FG V +A +TVAVK + T H
Sbjct: 17 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATXRTVAVKMLKEGATHSEH 76
Query: 224 RQFTAEMETLGKVKHQ-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLD 281
R +E++ L + H N+V LLG C+ L+V E+ G+L +LR+
Sbjct: 77 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK 136
Query: 282 RAKRYK----------IACSSARGLAFL------HQD------------------FGLAR 307
YK + A+G+ FL H+D FGLAR
Sbjct: 137 PEDLYKDFLTLEHLIXYSFQVAKGMEFLASRKXIHRDLAARNILLSEKNVVKICDFGLAR 196
Query: 308 LISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEF 364
I V D L ++ PE R+ T + DV+SFGV+L E+ + A G +
Sbjct: 197 DIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI 256
Query: 365 QEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTML 424
E+ L ++ + +A D P +M + DC P+ RPT
Sbjct: 257 DEEFCRRL-----KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFS 299
Query: 425 HVLKLL 430
+++ L
Sbjct: 300 ELVEHL 305
>pdb|3NRM|A Chain A, Imidazo[1,2-A]pyrazine-Based Aurora Kinase Inhibitors
Length = 283
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 45/262 (17%)
Query: 191 LEDGGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLG 246
L G FG VY A K + A+K +A+ + Q E+E ++H N++ L G
Sbjct: 19 LGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYG 78
Query: 247 YCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQ 301
Y L+ EY G++ L+ + E ++A C S R +H+
Sbjct: 79 YFHDATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHR 135
Query: 302 DFGLARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSF 346
D L+ SA E ++ + GTL Y+PPE + RM + D++S
Sbjct: 136 DIKPENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSL 195
Query: 347 GVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKML 406
GV+ E + K P F+ AN ++++ + + P + G++ ++ ++L
Sbjct: 196 GVLCYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLL 244
Query: 407 RIAADCVADNPATRPTMLHVLK 428
+ NP+ RP + VL+
Sbjct: 245 K-------HNPSQRPMLREVLE 259
>pdb|4HGE|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
pdb|4HGE|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 8
Length = 300
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 17 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 76
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 77 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 133
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 134 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 193
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 194 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 222
>pdb|3U6J|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyrazolone Inhibitor
Length = 314
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 120/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 24 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 80
Query: 239 Q-NLVLLLGYCSFDEEKLLVY-EYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 81 HLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I +V D
Sbjct: 141 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGD 200
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 201 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 255
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 256 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 296
>pdb|1OL5|A Chain A, Structure Of Aurora-A 122-403, Phosphorylated On Thr287,
Thr288 And Bound To Tpx2 1-43
pdb|1OL7|A Chain A, Structure Of Human Aurora-A 122-403 Phosphorylated On
Thr287, Thr288
Length = 282
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 21 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 80
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 81 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 137
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 138 PENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 197
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 198 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 244
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 245 -----HNPSQRPMLREVLE 258
>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
pdb|3DK3|B Chain B, Crystal Structure Of Mutant Abl Kinase Domain In Complex
With Small Molecule Fragment
Length = 293
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 87/207 (42%), Gaps = 26/207 (12%)
Query: 173 INISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGK-TVAVKKFSQAKTQGHRQFTAEME 231
+++ ++ +T+ L G +G VY+ TVAVK + T +F E
Sbjct: 1 MSLDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAA 59
Query: 232 TLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV-----LDRAKRY 286
+ ++KH NLV LLG C+ + ++ E+M G+L +LR EV L A +
Sbjct: 60 VMKEIKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLREC-NRQEVSAVVLLYMATQI 118
Query: 287 KIACSSARGLAFLHQ------------------DFGLARLISACETHVSTDIAGTLGYIP 328
A F+H+ DFGL+RL++ + +
Sbjct: 119 SSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTFTAHAGAKFPIKWTA 178
Query: 329 PEYGQSRMSTTRGDVYSFGVILLELVT 355
PE + + DV++FGV+L E+ T
Sbjct: 179 PESLAYNKFSIKSDVWAFGVLLWEIAT 205
>pdb|4E4M|A Chain A, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|B Chain B, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|D Chain D, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4M|E Chain E, Jak2 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4F08|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F08|B Chain B, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
pdb|4F09|A Chain A, Discovery And Optimization Of C-2 Methyl
Imidazo-Pyrrolopyridines As Potent And Orally
Bioavailable Jak1 Inhibitors With Selectivity Over Jak2
Length = 302
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 19 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 78
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 79 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 135
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 136 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 195
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 196 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 224
>pdb|2B7A|A Chain A, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|2B7A|B Chain B, The Structural Basis Of Janus Kinase 2 Inhibition By A
Potent And Specific Pan-Janus Kinase Inhibitor
pdb|3FUP|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3FUP|B Chain B, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 293
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 10 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 69
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 70 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 126
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 127 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 186
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 187 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 215
>pdb|3E62|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E63|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
pdb|3E64|A Chain A, Fragment Based Discovery Of Jak-2 Inhibitors
Length = 293
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 11 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 70
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 71 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 127
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 128 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 187
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 188 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 216
>pdb|3RVG|A Chain A, Crystals Structure Of Jak2 With A
1-Amino-5h-Pyrido[4,3-B]indol-4- Carboxamide Inhibitor
Length = 303
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 16 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 75
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 76 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 132
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 133 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 192
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 193 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 221
>pdb|2YJR|A Chain A, Structure Of F1174l Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 43 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 102
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K+ HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 103 SKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 162
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 163 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 222
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 223 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 273
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 274 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 315
>pdb|3EWH|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridyl-Pyrimidine Benzimidazole Inhibitor
Length = 314
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 82/308 (26%), Positives = 125/308 (40%), Gaps = 65/308 (21%)
Query: 171 LRINISMFQQPLLKLTLVDILEDGGFGTVYKA------TLPDGKTVAVKKFSQAKTQG-H 223
L + S ++ P +L L L G FG V +A +TVAVK + T H
Sbjct: 6 LPYDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEH 65
Query: 224 RQFTAEMETLGKVKHQ-NLVLLLGYCSFDEEKLLVY-EYMVNGSLDLWLRNATGSHEVLD 281
R +E++ L + H N+V LLG C+ L+V E+ G+L +LR+
Sbjct: 66 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYK 125
Query: 282 RAKR--YK-------IACSS---ARGLAFL------HQD------------------FGL 305
A YK + C S A+G+ FL H+D FGL
Sbjct: 126 VAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGL 185
Query: 306 ARLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGP 362
AR I +V D L ++ PE R+ T + DV+SFGV+L E+ + A G
Sbjct: 186 ARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 245
Query: 363 EFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPT 422
+ E+ L ++ + +A D P +M + DC P+ RPT
Sbjct: 246 KIDEEFCRRL-----KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPT 288
Query: 423 MLHVLKLL 430
+++ L
Sbjct: 289 FSELVEHL 296
>pdb|3Q32|A Chain A, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
pdb|3Q32|B Chain B, Structure Of Janus Kinase 2 With A Pyrrolotriazine
Inhibitor
Length = 301
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 71
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 72 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 128
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 129 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 188
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 189 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 217
>pdb|3LPB|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3LPB|B Chain B, Crystal Structure Of Jak2 Complexed With A Potent
2,8-Diaryl Quinoxaline Inhibitor
pdb|3KRR|A Chain A, Crystal Structure Of Jak2 Complexed With A Potent
Quinoxaline Atp Site Inhibitor
Length = 295
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 12 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 71
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 72 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 128
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 129 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 188
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 189 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 217
>pdb|4AQC|A Chain A, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
pdb|4AQC|B Chain B, Triazolopyridine-Based Inhibitor Of Janus Kinase 2
Length = 301
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 18 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 77
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 78 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHK---ERIDHIKLLQYTSQICKGME 134
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 135 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 194
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 195 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 223
>pdb|3UNZ|A Chain A, Aurora A In Complex With Rpm1679
pdb|3UNZ|B Chain B, Aurora A In Complex With Rpm1679
pdb|3UO4|A Chain A, Aurora A In Complex With Rpm1680
pdb|3UO5|A Chain A, Aurora A In Complex With Yl1-038-31
pdb|3UO6|A Chain A, Aurora A In Complex With Yl5-083
pdb|3UO6|B Chain B, Aurora A In Complex With Yl5-083
pdb|3UOD|A Chain A, Aurora A In Complex With Rpm1693
pdb|3UOH|A Chain A, Aurora A In Complex With Rpm1722
pdb|3UOH|B Chain B, Aurora A In Complex With Rpm1722
pdb|3UOJ|A Chain A, Aurora A In Complex With Rpm1715
pdb|3UOJ|B Chain B, Aurora A In Complex With Rpm1715
pdb|3UOK|A Chain A, Aurora A In Complex With Yl5-81-1
pdb|3UOK|B Chain B, Aurora A In Complex With Yl5-81-1
pdb|3UOL|A Chain A, Aurora A In Complex With So2-162
pdb|3UOL|B Chain B, Aurora A In Complex With So2-162
pdb|3UP2|A Chain A, Aurora A In Complex With Rpm1686
pdb|3UP7|A Chain A, Aurora A In Complex With Yl1-038-09
pdb|4DEA|A Chain A, Aurora A In Complex With Yl1-038-18
pdb|4DEB|A Chain A, Aurora A In Complex With Rk2-17-01
pdb|4DED|A Chain A, Aurora A In Complex With Yl1-038-21
pdb|4DEE|A Chain A, Aurora A In Complex With Adp
Length = 279
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 20 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 79
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 80 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 136
Query: 305 LARLI--SACETHVST-------------DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 137 PENLLLGSAGELKIADFGWSVHAPSSRRDTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 196
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 197 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 243
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 244 -----HNPSQRPMLREVLE 257
>pdb|4FNW|A Chain A, Crystal Structure Of The Apo F1174l Anaplastic Lymphoma
Kinase Catalytic Domain
Length = 327
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 29 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 88
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K+ HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 89 SKLNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 148
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 149 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 208
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 209 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 259
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 260 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 301
>pdb|2W1C|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
pdb|2W1G|A Chain A, Structure Determination Of Aurora Kinase In Complex With
Inhibitor
Length = 275
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 22 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 81
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 82 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 138
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 139 PENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 198
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 199 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 245
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 246 -----HNPSQRPMLREVLE 259
>pdb|3HA6|A Chain A, Crystal Structure Of Aurora A In Complex With Tpx2 And
Compound 10
Length = 268
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRXXLCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|2XA4|A Chain A, Inhibitors Of Jak2 Kinase Domain
pdb|2XA4|B Chain B, Inhibitors Of Jak2 Kinase Domain
Length = 298
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 15 LKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 74
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ EY+ GSL +L+ E +D K + +G+
Sbjct: 75 NIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQ---AHAERIDHIKLLQYTSQICKGME 131
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 132 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 191
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 192 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 220
>pdb|3H0Y|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|A Chain A, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|B Chain B, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H0Z|C Chain C, Aurora A In Complex With A Bisanilinopyrimidine
pdb|3H10|A Chain A, Aurora A Inhibitor Complex
pdb|3H10|B Chain B, Aurora A Inhibitor Complex
pdb|3H10|D Chain D, Aurora A Inhibitor Complex
pdb|3P9J|A Chain A, Aurora A Kinase Domain With Phthalazinone Pyrazole
Inhibitor
Length = 268
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 19 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 78
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 79 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 135
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ + GTL Y+PPE + RM + D++S GV+
Sbjct: 136 PENLLLGSAGELKIADFGWSVHAPSSRRAALCGTLDYLPPEMIEGRMHDEKVDLWSLGVL 195
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 196 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 242
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 243 -----HNPSQRPMLREVLE 256
>pdb|2YJS|A Chain A, Structure Of C1156y Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 104/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQAKT-QGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + + Q F E +
Sbjct: 43 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVYSEQDELDFLMEALII 102
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 103 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 162
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 163 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 222
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 223 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 273
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 274 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 315
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 122/330 (36%), Gaps = 84/330 (25%)
Query: 169 GPLRINISMF--------QQPLLKLTLVDILEDGGFGTVYKATLPDGK------TVAVKK 214
GPL +++ F + P L L L +G FG V KAT K TVAVK
Sbjct: 1 GPLSLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKM 60
Query: 215 FSQ-AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNA 273
+ A R +E L +V H +++ L G CS D LL+ EY GSL +LR +
Sbjct: 61 LKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRES 120
Query: 274 TG--------------------SHEVLDRAKRYKIACSSARGLAFLHQ------------ 301
L A ++G+ +L +
Sbjct: 121 RKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMSLVHRDLAARN 180
Query: 302 ------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-----SRMSTTRGDVY 344
DFGL+R + ++ V + G IP ++ + TT+ DV+
Sbjct: 181 ILVAEGRKMKISDFGLSRDVYEEDSXVKR----SQGRIPVKWMAIESLFDHIYTTQSDVW 236
Query: 345 SFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK 404
SFGV+L E+VT P + NL+ + ++ D+ + +
Sbjct: 237 SFGVLLWEIVTLGGNPYPGIPPERLFNLLK---TGHRMERPDNCSE-------------E 280
Query: 405 MLRIAADCVADNPATRPTMLHVLKLLHEIV 434
M R+ C P RP + K L +++
Sbjct: 281 MYRLMLQCWKQEPDKRPVFADISKDLEKMM 310
>pdb|2DWB|A Chain A, Aurora-A Kinase Complexed With Amppnp
Length = 285
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 110/259 (42%), Gaps = 45/259 (17%)
Query: 194 GGFGTVYKATLPDGKTV-AVKKFSQAKTQG---HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + A+K +A+ + Q E+E ++H N++ L GY
Sbjct: 24 GKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 83
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAFLHQDFG 304
L+ EY G++ L+ + E ++A C S R +H+D
Sbjct: 84 DATRVYLILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKR---VIHRDIK 140
Query: 305 LARLI--SACETHVS-------------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
L+ SA E ++ T + GTL Y+PPE + R + D++S GV+
Sbjct: 141 PENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEXIEGRXHDEKVDLWSLGVL 200
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
E + K P F+ AN ++++ + + P + G++ ++ ++L+
Sbjct: 201 CYEFLVGK----PPFE----ANTYQETYKRISRV---EFTFPDFVTEGARDLISRLLK-- 247
Query: 410 ADCVADNPATRPTMLHVLK 428
NP+ RP + VL+
Sbjct: 248 -----HNPSQRPXLREVLE 261
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 89/202 (44%), Gaps = 28/202 (13%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGK--TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+++ ++ G FG V + LP K +VA+K T+ R+ F E +G+ H
Sbjct: 47 ISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHP 106
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA-- 297
N++ L G + + ++V E M NGSLD +LR V+ + S + L+
Sbjct: 107 NIIRLEGVVTKSKPVMIVTEXMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDM 166
Query: 298 -FLHQ------------------DFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRM 336
+H+ DFGL+R++ T G + + PE R
Sbjct: 167 GAVHRDLAARNILINSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRK 226
Query: 337 STTRGDVYSFGVILLELVTAKE 358
T+ DV+S+G++L E+++ E
Sbjct: 227 FTSASDVWSYGIVLWEVMSYGE 248
>pdb|4DCE|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4DCE|B Chain B, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With A Piperidine-Carboxamide Inhibitor
pdb|4FOD|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 36
Length = 333
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 35 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 94
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 95 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 154
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 155 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 214
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 215 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 265
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 266 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 307
>pdb|2XB7|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Nvp- Tae684
pdb|2XBA|A Chain A, Structure Of Human Anaplastic Lymphoma Kinase In Complex
With Pha-E429
Length = 315
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 20 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 79
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 80 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 139
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 140 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 199
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 200 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 250
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 251 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 292
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 78/330 (23%), Positives = 122/330 (36%), Gaps = 84/330 (25%)
Query: 169 GPLRINISMF--------QQPLLKLTLVDILEDGGFGTVYKATLPDGK------TVAVKK 214
GPL +++ F + P L L L +G FG V KAT K TVAVK
Sbjct: 1 GPLSLSVDAFKILEDPKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKM 60
Query: 215 FSQ-AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNA 273
+ A R +E L +V H +++ L G CS D LL+ EY GSL +LR +
Sbjct: 61 LKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFLRES 120
Query: 274 TG--------------------SHEVLDRAKRYKIACSSARGLAFLHQ------------ 301
L A ++G+ +L +
Sbjct: 121 RKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARN 180
Query: 302 ------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-----SRMSTTRGDVY 344
DFGL+R + ++ V + G IP ++ + TT+ DV+
Sbjct: 181 ILVAEGRKMKISDFGLSRDVYEEDSXVKR----SQGRIPVKWMAIESLFDHIYTTQSDVW 236
Query: 345 SFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK 404
SFGV+L E+VT P + NL+ + ++ D+ + +
Sbjct: 237 SFGVLLWEIVTLGGNPYPGIPPERLFNLLK---TGHRMERPDNCSE-------------E 280
Query: 405 MLRIAADCVADNPATRPTMLHVLKLLHEIV 434
M R+ C P RP + K L +++
Sbjct: 281 MYRLMLQCWKQEPDKRPVFADISKDLEKMM 310
>pdb|2YFX|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase In
Complex With Crizotinib
Length = 327
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 87
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 88 SKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 147
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 148 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 207
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 208 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 258
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 259 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 300
>pdb|2XP2|A Chain A, Structure Of The Human Anaplastic Lymphoma Kinase In
Complex With Crizotinib (Pf-02341066)
Length = 327
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 87
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 88 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 147
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 148 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 207
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 208 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 258
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 259 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 300
>pdb|2YHV|A Chain A, Structure Of L1196m Mutant Anaplastic Lymphoma Kinase
Length = 342
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 43 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 102
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 103 SKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 162
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 163 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 222
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 223 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 273
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 274 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 315
>pdb|2HEL|A Chain A, Crystal Structure Of A Mutant Epha4 Kinase Domain (Y742a)
Length = 306
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 34/196 (17%)
Query: 194 GGFGTVYKATLP-DGK---TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYC 248
G FG V L GK VA+K T R+ F +E +G+ H N++ L G
Sbjct: 40 GEFGEVCSGRLKVPGKREICVAIKTLKAGYTDKQRRDFLSEASIMGQFDHPNIIHLEGVV 99
Query: 249 SFDEEKLLVYEYMVNGSLDLWLRNATGSHEVL------------------------DRAK 284
+ + +++ EYM NGSLD +LR G V+ D A
Sbjct: 100 TKCKPVMIITEYMENGSLDAFLRKNDGRFTVIQLVGMLRGIGSGMKYLSDMSAVHRDLAA 159
Query: 285 RYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG--YIPPEYGQSRMSTTRGD 342
R + S+ L DFG++R++ T G + + PE R T+ D
Sbjct: 160 RNILVNSN---LVCKVSDFGMSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTSASD 216
Query: 343 VYSFGVILLELVTAKE 358
V+S+G+++ E+++ E
Sbjct: 217 VWSYGIVMWEVMSYGE 232
>pdb|3AOX|A Chain A, X-Ray Crystal Structure Of Human Anaplastic Lymphoma
Kinase In Complex With Ch5424802
Length = 344
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 45 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 104
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 105 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 164
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 165 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 224
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 225 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 275
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 276 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 317
>pdb|4FOB|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 1
pdb|4FOC|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Acyliminobenzimidazole Inhibitor 2
Length = 353
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 55 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 114
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 115 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 174
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 175 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 234
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 235 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 285
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 286 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 327
>pdb|1YWN|A Chain A, Vegfr2 In Complex With A Novel
4-amino-furo[2,3-d]pyrimidine
Length = 316
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 119/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 33 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 89
Query: 239 Q-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I V D
Sbjct: 150 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 209
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 210 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 264
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 265 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 305
>pdb|4FNZ|A Chain A, Crystal Structure Of Human Anaplastic Lymphoma Kinase In
Complex With Piperidine-Carboxamide Inhibitor 2
Length = 327
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 29 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 88
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 89 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 148
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 149 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAML 208
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 209 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 259
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 260 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 301
>pdb|2P2I|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|2P2I|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Nicotinamide Inhibitor
pdb|3EFL|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
pdb|3EFL|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With Motesanib
Length = 314
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 119/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 24 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 80
Query: 239 Q-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 81 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I V D
Sbjct: 141 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 200
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 201 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 255
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 256 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 296
>pdb|2P2H|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridinyl-Triazine Inhibitor
pdb|2QU5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzimidazole Inhibitor
pdb|2QU6|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|2QU6|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzoxazole Inhibitor
pdb|3B8Q|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8Q|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|3B8R|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Naphthamide Inhibitor
pdb|2RL5|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A 2,3-Dihydro-1,4-Benzoxazine Inhibitor
pdb|3BE2|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzamide Inhibitor
pdb|3CP9|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CP9|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPB|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPB|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Bisamide Inhibitor
pdb|3CPC|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3CPC|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Pyridone Inhibitor
pdb|3DTW|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
pdb|3DTW|B Chain B, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Benzisoxazole Inhibitor
Length = 314
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 119/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 24 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 80
Query: 239 Q-NLVLLLGYCSFDEEKLLVY-EYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 81 HLNVVNLLGACTKPGGPLMVITEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 140
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I V D
Sbjct: 141 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIXKDPDXVRKGD 200
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 201 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 255
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 256 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 296
>pdb|2OH4|A Chain A, Crystal Structure Of Vegfr2 With A Benzimidazole-Urea
Inhibitor
Length = 316
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 81/307 (26%), Positives = 123/307 (40%), Gaps = 64/307 (20%)
Query: 171 LRINISMFQQPLLKLTLVDILEDGGFGTVYKA------TLPDGKTVAVKKFSQAKTQG-H 223
L + S ++ P +L L L G FG V +A +TVAVK + T H
Sbjct: 16 LPYDASKWEFPRDRLNLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEH 75
Query: 224 RQFTAEMETLGKVKHQ-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNA-------- 273
R +E++ L + H N+V LLG C+ L+V E+ G+L +LR+
Sbjct: 76 RALMSELKILIHIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK 135
Query: 274 TGSHEVLDRAKRYKIACSS---ARGLAFL------HQD------------------FGLA 306
T D + C S A+G+ FL H+D FGLA
Sbjct: 136 TPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 195
Query: 307 RLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPE 363
R I V D L ++ PE R+ T + DV+SFGV+L E+ + A G +
Sbjct: 196 RDIXKDPDXVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVK 255
Query: 364 FQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTM 423
E+ L ++ + +A D P +M + DC P+ RPT
Sbjct: 256 IDEEFCRRL-----KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTF 298
Query: 424 LHVLKLL 430
+++ L
Sbjct: 299 SELVEHL 305
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 41/206 (19%)
Query: 184 KLTLVDILEDGGFGTVYKAT-LPDGKT----VAVKKFSQAK-TQGHRQFTAEMETLGKVK 237
+L V +L G FGTVYK +P+G+T VA+K ++ + + +F E + +
Sbjct: 39 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMD 98
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSAR 294
H +LV LLG C LV + M +G L ++ ++ GS +L+ A+
Sbjct: 99 HPHLVRLLGVC-LSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLN------WCVQIAK 151
Query: 295 GLAFLHQ------------------------DFGLARLISACETHVSTDIAGT-LGYIPP 329
G+ +L + DFGLARL+ E + D + ++
Sbjct: 152 GMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMAL 211
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E R T + DV+S+GV + EL+T
Sbjct: 212 ECIHYRKFTHQSDVWSYGVTIWELMT 237
>pdb|1VR2|A Chain A, Human Vascular Endothelial Growth Factor Receptor 2 (Kdr)
Kinase Domain
Length = 316
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 119/293 (40%), Gaps = 62/293 (21%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQG-HRQFTAEMETLGKVKH 238
+PL + ++E FG AT +TVAVK + T HR +E++ L + H
Sbjct: 33 KPLGRGAFGQVIEADAFGIDKTATC---RTVAVKMLKEGATHSEHRALMSELKILIHIGH 89
Query: 239 Q-NLVLLLGYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKR--YK------- 287
N+V LLG C+ L+V E+ G+L +LR+ A YK
Sbjct: 90 HLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEH 149
Query: 288 IACSS---ARGLAFL------HQD------------------FGLARLISACETHVST-D 319
+ C S A+G+ FL H+D FGLAR I V D
Sbjct: 150 LICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDXVRKGD 209
Query: 320 IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKEPTGPEFQEKEGANLVGWVF 377
L ++ PE R+ T + DV+SFGV+L E+ + A G + E+ L
Sbjct: 210 ARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRL----- 264
Query: 378 QKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
++ + +A D P +M + DC P+ RPT +++ L
Sbjct: 265 KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPSQRPTFSELVEHL 305
>pdb|3LCT|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
pdb|3LCS|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 344
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 46 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 105
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 106 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 165
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 166 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAML 225
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 226 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 276
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 277 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 318
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 56/206 (27%), Positives = 92/206 (44%), Gaps = 41/206 (19%)
Query: 184 KLTLVDILEDGGFGTVYKAT-LPDGKT----VAVKKFSQAK-TQGHRQFTAEMETLGKVK 237
+L V +L G FGTVYK +P+G+T VA+K ++ + + +F E + +
Sbjct: 16 ELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMD 75
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSAR 294
H +LV LLG C LV + M +G L ++ ++ GS +L+ A+
Sbjct: 76 HPHLVRLLGVC-LSPTIQLVTQLMPHGCLLEYVHEHKDNIGSQLLLN------WCVQIAK 128
Query: 295 GLAFLHQ------------------------DFGLARLISACETHVSTDIAGT-LGYIPP 329
G+ +L + DFGLARL+ E + D + ++
Sbjct: 129 GMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMAL 188
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVT 355
E R T + DV+S+GV + EL+T
Sbjct: 189 ECIHYRKFTHQSDVWSYGVTIWELMT 214
>pdb|3L9P|A Chain A, Crystal Structure Of The Anaplastic Lymphoma Kinase
Catalytic Domain
Length = 367
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 103/289 (35%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 69 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 128
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 129 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 188
Query: 285 RYKIACSSARGLAFLHQ---------------------DFGLARLISACETHVSTDIAG- 322
C F+H+ DFG+AR I + A
Sbjct: 189 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAML 248
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
+ ++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 249 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 299
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 300 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 341
>pdb|4E6D|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6D|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 7
pdb|4E6Q|A Chain A, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
pdb|4E6Q|B Chain B, Jak2 Kinase (Jh1 Domain) Triple Mutant In Complex With
Compound 12
Length = 298
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 87/210 (41%), Gaps = 38/210 (18%)
Query: 185 LTLVDILEDGGFGTVYKAT---LPD--GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V L D G+ VAVKK + + R F E+E L ++H
Sbjct: 15 LKFLRQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHD 74
Query: 240 NLVLLLGYC-SFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
N+V G C S L L+ E++ GSL +L+ E +D K + +G+
Sbjct: 75 NIVKYKGVCYSAGRRNLKLIMEFLPYGSLREYLQKHK---ERIDHIKLLQYTSQICKGME 131
Query: 298 FL------HQ------------------DFGLARLISACETHVSTDIAG---TLGYIPPE 330
+L H+ DFGL +++ + G Y P
Sbjct: 132 YLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEXXKVKEPGESPIFWYAPES 191
Query: 331 YGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
+S+ S DV+SFGV+L EL T E +
Sbjct: 192 LTESKFSVA-SDVWSFGVVLYELFTYIEKS 220
>pdb|2P0C|A Chain A, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|2P0C|B Chain B, Catalytic Domain Of The Proto-Oncogene Tyrosine-Protein
Kina
pdb|3BRB|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BRB|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Tyrosine- Protein Kinase Mer In Complex
With Adp
pdb|3BPR|A Chain A, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|B Chain B, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|C Chain C, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3BPR|D Chain D, Crystal Structure Of Catalytic Domain Of The
Proto-Oncogene Protein Kinase Mer In Complex With
Inhibitor C52
pdb|3TCP|A Chain A, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
pdb|3TCP|B Chain B, Crystal Structure Of The Catalytic Domain Of The
Proto-Oncogene Tyrosine-Protein Kinase Mer In Complex
With Inhibitor Unc569
Length = 313
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 118/294 (40%), Gaps = 60/294 (20%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKT--VAVK--KFSQAKTQGHRQFTAEMETLGKVKH 238
L L IL +G FG+V + L DG + VAVK K + + +F +E + H
Sbjct: 36 LILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSH 95
Query: 239 QNLVLLLGYCSFDEEK-----LLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIAC 290
N++ LLG C + +++ +M G L +L R TG + K
Sbjct: 96 PNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHI-PLQTLLKFMV 154
Query: 291 SSARGLA------FLHQD------------------FGLARLISACETHVSTDIAGT-LG 325
A G+ FLH+D FGL++ I + + + IA +
Sbjct: 155 DIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVK 214
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQA 385
+I E R+ T++ DV++FGV + E+ T P Q E + ++ + +Q
Sbjct: 215 WIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHE---MYDYLLHGHRLKQP 271
Query: 386 DDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTM----LHVLKLLHEIVD 435
+D LD ++ I C +P RPT L + KLL + D
Sbjct: 272 EDCLD-------------ELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312
>pdb|4FNX|A Chain A, Crystal Structure Of The Apo R1275q Anaplastic Lymphoma
Kinase Catalytic Domain
pdb|4FNY|A Chain A, Crystal Structure Of The R1275q Anaplastic Lymphoma Kinase
Catalytic Domain In Complex With A Benzoxazole Inhibitor
Length = 327
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/289 (21%), Positives = 98/289 (33%), Gaps = 54/289 (18%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQ-AKTQGHRQFTAEMETL 233
P +TL+ L G FG VY+ + P VAVK + Q F E +
Sbjct: 29 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALII 88
Query: 234 GKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSHEVLDRAK 284
K HQN+V +G + ++ E M G L +LR ++ ++L A+
Sbjct: 89 SKFNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVAR 148
Query: 285 RYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLG------------------- 325
C F+H+D + C G G
Sbjct: 149 DIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMAQDIYRASYYRKGGCAML 208
Query: 326 ---YIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
++PPE + T++ D +SFGV+L E+ + P +E V
Sbjct: 209 PVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFV--------- 259
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLH 431
+ +DP G + RI C P RP +L+ +
Sbjct: 260 -TSGGRMDPPKNCPGP------VYRIMTQCWQHQPEDRPNFAIILERIE 301
>pdb|3SXR|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXR|B Chain B, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complex With Dasatinib
pdb|3SXS|A Chain A, Crystal Structure Of Bmx Non-Receptor Tyrosine Kinase
Complexed With Pp2
Length = 268
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 28/196 (14%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
++TL+ L G FG V VAVK + + +F E +T+ K+ H LV
Sbjct: 9 EITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEG-SMSEDEFFQEAQTMMKLSHPKLVK 67
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL--HQ 301
G CS + +V EY+ NG L +LR+ L+ ++ ++ G+AFL HQ
Sbjct: 68 FYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKG---LEPSQLLEMCYDVCEGMAFLESHQ 124
Query: 302 ----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTT 339
DFG+ R + + S + + PE ++
Sbjct: 125 FIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYSS 184
Query: 340 RGDVYSFGVILLELVT 355
+ DV++FG+++ E+ +
Sbjct: 185 KSDVWAFGILMWEVFS 200
>pdb|3S95|A Chain A, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
pdb|3S95|B Chain B, Crystal Structure Of The Human Limk1 Kinase Domain In
Complex With Staurosporine
Length = 310
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/204 (22%), Positives = 85/204 (41%), Gaps = 41/204 (20%)
Query: 189 DILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGY 247
++L G FG K T + G+ + +K+ + + R F E++ + ++H N++ +G
Sbjct: 16 EVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGV 75
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------ 301
D+ + EY+ G+L +++ + ++R A A G+A+LH
Sbjct: 76 LYKDKRLNFITEYIKGGTLRGIIKSMDSQYPW---SQRVSFAKDIASGMAYLHSMNIIHR 132
Query: 302 ------------------DFGLARLISACETHVS-------------TDIAGTLGYIPPE 330
DFGLARL+ +T + G ++ PE
Sbjct: 133 DLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE 192
Query: 331 YGQSRMSTTRGDVYSFGVILLELV 354
R + DV+SFG++L E++
Sbjct: 193 MINGRSYDEKVDVFSFGIVLCEII 216
>pdb|3OMV|A Chain A, Crystal Structure Of C-Raf (Raf-1)
pdb|3OMV|B Chain B, Crystal Structure Of C-Raf (Raf-1)
Length = 307
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 103/264 (39%), Gaps = 48/264 (18%)
Query: 194 GGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEE 253
G FGTVYK V + K + + F E+ L K +H N++L +GY + D
Sbjct: 47 GSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTKDNL 106
Query: 254 KLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------------ 301
+V ++ SL L ++ + IA +A+G+ +LH
Sbjct: 107 A-IVTQWCEGSSLYKHLHVQETKFQMF---QLIDIARQTAQGMDYLHAKNIIHRDMKSNN 162
Query: 302 ------------DFGLARLISACE-THVSTDIAGTLGYIPPEYGQSRMS-----TTRGDV 343
DFGLA + S + G++ ++ PE RM + + DV
Sbjct: 163 IFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEV--IRMQDNNPFSFQSDV 220
Query: 344 YSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
YS+G++L EL+T + P + +VG + A L N P +
Sbjct: 221 YSYGIVLYELMTGELPYSHINNRDQIIFMVG-------RGYASPDLSKLYKNC---PKAM 270
Query: 404 KMLRIAADCVADNPATRPTMLHVL 427
K R+ ADCV RP +L
Sbjct: 271 K--RLVADCVKKVKEERPLFPQIL 292
>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Indirubin 3'-Monoxime Bound
Length = 313
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 32/207 (15%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFS-QAKTQG-HRQFTAEMETLGK 235
FQ + K ++ + +G +G VYKA G+ VA+K+ A+ +G E+ L +
Sbjct: 16 FQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARG 295
+ H N+V L+ + LV+E+M + N TG + + Y++ RG
Sbjct: 76 LHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQL----LRG 131
Query: 296 LAFLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEY 331
+A HQ DFGLAR + ++ TL Y P+
Sbjct: 132 VAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVV-TLWYRAPDV 190
Query: 332 GQ-SRMSTTRGDVYSFGVILLELVTAK 357
S+ +T D++S G I E++T K
Sbjct: 191 LMGSKKYSTSVDIWSIGCIFAEMITGK 217
>pdb|3MDY|A Chain A, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
pdb|3MDY|C Chain C, Crystal Structure Of The Cytoplasmic Domain Of The Bone
Morp Protein Receptor Type-1b (Bmpr1b) In Complex With
Fkbp12 An 193189
Length = 337
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 82/317 (25%), Positives = 134/317 (42%), Gaps = 68/317 (21%)
Query: 170 PLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAE 229
PL + ++ +Q + +V + G +G V+ G+ VAVK F + + T
Sbjct: 28 PLLVQRTIAKQ----IQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTTEEASWFRETEI 82
Query: 230 METLGKVKHQNLVLLLGYCSFD-------EEKLLVYEYMVNGSLDLWLRNATGSHEVLDR 282
+T+ ++H+N+ LG+ + D + L+ +Y NGSL +L++ T LD
Sbjct: 83 YQTV-LMRHENI---LGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKSTT-----LDA 133
Query: 283 AKRYKIACSSARGLAFLH--------------------------------QDFGLA-RLI 309
K+A SS GL LH D GLA + I
Sbjct: 134 KSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFI 193
Query: 310 SAC-ETHVSTDI-AGTLGYIPPEYGQSRM------STTRGDVYSFGVILLELVTAKEPTG 361
S E + + GT Y+PPE + S D+YSFG+IL E V + +G
Sbjct: 194 SDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWE-VARRCVSG 252
Query: 362 PEFQEKE--GANLV--GWVFQKMKKQQADDVLDPTVLNAGSKPMMLKML-RIAADCVADN 416
+E + +LV ++ M++ L P+ N S L+ + ++ +C A N
Sbjct: 253 GIVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWSSDECLRQMGKLMTECWAHN 312
Query: 417 PATRPTMLHVLKLLHEI 433
PA+R T L V K L ++
Sbjct: 313 PASRLTALRVKKTLAKM 329
>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510
With Adp Bound
Length = 311
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 32/207 (15%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFS-QAKTQG-HRQFTAEMETLGK 235
FQ + K ++ + +G +G VYKA G+ VA+K+ A+ +G E+ L +
Sbjct: 16 FQGLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKE 75
Query: 236 VKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARG 295
+ H N+V L+ + LV+E+M + N TG + + Y++ RG
Sbjct: 76 LHHPNIVSLIDVIHSERCLTLVFEFMEKDLKKVLDENKTGLQDSQIKIYLYQL----LRG 131
Query: 296 LAFLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEY 331
+A HQ DFGLAR + ++ TL Y P+
Sbjct: 132 VAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVV-TLWYRAPDV 190
Query: 332 GQ-SRMSTTRGDVYSFGVILLELVTAK 357
S+ +T D++S G I E++T K
Sbjct: 191 LMGSKKYSTSVDIWSIGCIFAEMITGK 217
>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain
pdb|4BBM|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
pdb|4BBM|B Chain B, Crystal Structure Of The Human Cdkl2 Kinase Domain With
Bound Tcs 2312
Length = 331
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 176 SMFQQPLLKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTA--EMET 232
+++ Q + K + ++ +G +G V K D G+ VA+KKF ++ + A E++
Sbjct: 18 NLYFQSMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKL 77
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLD------------------LWLRNAT 274
L +++H+NLV LL C + LV+E++ + LD + N
Sbjct: 78 LKQLRHENLVNLLEVCKKKKRWYLVFEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGI 137
Query: 275 G---SHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEY 331
G SH ++ R + + S G+ L DFG AR ++A V D T Y PE
Sbjct: 138 GFCHSHNIIHRDIKPENILVSQSGVVKL-CDFGFARTLAA-PGEVYDDEVATRWYRAPEL 195
Query: 332 GQSRMSTTRG-DVYSFGVILLELVTAKEPTGP 362
+ + DV++ G ++ E+ EP P
Sbjct: 196 LVGDVKYGKAVDVWAIGCLVTEMFMG-EPLFP 226
>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|B Chain B, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|C Chain C, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|D Chain D, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|E Chain E, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|F Chain F, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|G Chain G, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
pdb|3QA8|H Chain H, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta
Length = 676
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 34/205 (16%)
Query: 194 GGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLL------L 245
GGFG V + D G+ VA+K+ Q + +R+ + E++ + K+ H N+V L
Sbjct: 25 GGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGL 84
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGL---AFL 299
+ ++ LL EY G L +L N G E R I+ S+ R L +
Sbjct: 85 QKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDIS-SALRYLHENRII 143
Query: 300 HQDF---------GLARLISAC----------ETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
H+D G RLI + + T+ GTL Y+ PE + + T
Sbjct: 144 HRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVT 203
Query: 341 GDVYSFGVILLELVTAKEPTGPEFQ 365
D +SFG + E +T P P +Q
Sbjct: 204 VDYWSFGTLAFECITGFRPFLPNWQ 228
>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta
(I4122)
Length = 677
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 34/205 (16%)
Query: 194 GGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLL------L 245
GGFG V + D G+ VA+K+ Q + +R+ + E++ + K+ H N+V L
Sbjct: 26 GGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGL 85
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGL---AFL 299
+ ++ LL EY G L +L N G E R I+ S+ R L +
Sbjct: 86 QKLAPNDLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDIS-SALRYLHENRII 144
Query: 300 HQDF---------GLARLISAC----------ETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
H+D G RLI + + T+ GTL Y+ PE + + T
Sbjct: 145 HRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPELLEQKKYTVT 204
Query: 341 GDVYSFGVILLELVTAKEPTGPEFQ 365
D +SFG + E +T P P +Q
Sbjct: 205 VDYWSFGTLAFECITGFRPFLPNWQ 229
>pdb|1U54|A Chain A, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 20 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 79
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 80 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 137
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 138 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPESLK 197
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 198 TRTFSHASDTWMFGVTLWEMFTYGQEP 224
>pdb|4EWH|B Chain B, Co-Crystal Structure Of Ack1 With Inhibitor
pdb|4EWH|A Chain A, Co-Crystal Structure Of Ack1 With Inhibitor
Length = 275
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 10 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 69
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 70 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 127
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 128 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHXVMQEHRKVPFAWCAPESLK 187
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 188 TRTFSHASDTWMFGVTLWEMFTYGQEP 214
>pdb|1U46|A Chain A, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U46|B Chain B, Crystal Structure Of The Unphosphorylated Kinase Domain Of
The Tyrosine Kinase Ack1
pdb|1U4D|A Chain A, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U4D|B Chain B, Structure Of The Ack1 Kinase Domain Bound To
Debromohymenialdisine
pdb|1U54|B Chain B, Crystal Structures Of The Phosphorylated And
Unphosphorylated Kinase Domains Of The Cdc42-Associated
Tyrosine Kinase Ack1 Bound To Amp-Pcp
Length = 291
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 20 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 79
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 80 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 137
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 138 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK 197
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 198 TRTFSHASDTWMFGVTLWEMFTYGQEP 224
>pdb|3EQP|B Chain B, Crystal Structure Of Ack1 With Compound T95
pdb|3EQP|A Chain A, Crystal Structure Of Ack1 With Compound T95
pdb|3EQR|A Chain A, Crystal Structure Of Ack1 With Compound T74
pdb|3EQR|B Chain B, Crystal Structure Of Ack1 With Compound T74
Length = 276
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 10 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 69
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 70 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 127
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 128 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK 187
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 188 TRTFSHASDTWMFGVTLWEMFTYGQEP 214
>pdb|3BEA|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With A
Pyrimidinopyridone Inhibitor
Length = 333
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 115/304 (37%), Gaps = 70/304 (23%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF------SQAKTQGHRQFTAEM 230
++ P L L G FG V +AT GK AV K S A +E+
Sbjct: 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 100
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA 289
+ + + +H+N+V LLG C+ L++ EY G L +LR + VL+ + IA
Sbjct: 101 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKS---RVLETDPAFAIA 157
Query: 290 CSS-------------ARGLAFL------HQ------------------DFGLARLISAC 312
S+ A+G+AFL H+ DFGLAR I
Sbjct: 158 NSTLSTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 217
Query: 313 ETHVSTDIAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGAN 371
++ A + ++ PE + T + DV+S+G++L E+ + P
Sbjct: 218 SNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI------- 270
Query: 372 LVGWVFQKMKK---QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
LV F K+ K Q A P + I C A P RPT +
Sbjct: 271 LVNSKFYKLVKDGYQMAQPAFAPK-----------NIYSIMQACWALEPTHRPTFQQICS 319
Query: 429 LLHE 432
L E
Sbjct: 320 FLQE 323
>pdb|2I1M|A Chain A, Cfms Tyrosine Kinase (Tie2 Kid) In Complex With An
Arylamide Inhibitor
Length = 333
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 77/304 (25%), Positives = 115/304 (37%), Gaps = 70/304 (23%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF------SQAKTQGHRQFTAEM 230
++ P L L G FG V +AT GK AV K S A +E+
Sbjct: 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 100
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA 289
+ + + +H+N+V LLG C+ L++ EY G L +LR + VL+ + IA
Sbjct: 101 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKS---RVLETDPAFAIA 157
Query: 290 CSS-------------ARGLAFL------HQ------------------DFGLARLISAC 312
S+ A+G+AFL H+ DFGLAR I
Sbjct: 158 NSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMND 217
Query: 313 ETHVSTDIAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGAN 371
++ A + ++ PE + T + DV+S+G++L E+ + P
Sbjct: 218 SNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI------- 270
Query: 372 LVGWVFQKMKK---QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
LV F K+ K Q A P + I C A P RPT +
Sbjct: 271 LVNSKFYKLVKDGYQMAQPAFAPK-----------NIYSIMQACWALEPTHRPTFQQICS 319
Query: 429 LLHE 432
L E
Sbjct: 320 FLQE 323
>pdb|4HZR|A Chain A, Crystal Structure Of Ack1 Kinase Domain
pdb|4HZR|B Chain B, Crystal Structure Of Ack1 Kinase Domain
Length = 277
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 14 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 73
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 74 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 131
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 132 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK 191
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 192 TRTFSHASDTWMFGVTLWEMFTYGQEP 218
>pdb|4ID7|A Chain A, Ack1 Kinase In Complex With The Inhibitor
Cis-3-[8-amino-1-(4-
Phenoxyphenyl)imidazo[1,5-a]pyrazin-3-yl]cyclobutanol
Length = 273
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 10 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 69
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 70 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 127
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 128 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK 187
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 188 TRTFSHASDTWMFGVTLWEMFTYGQEP 214
>pdb|4HZS|A Chain A, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|B Chain B, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|C Chain C, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
pdb|4HZS|D Chain D, Crystal Structure Of Ack1 Kinase Domain With C-terminal
Sh3 Domain
Length = 341
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 84/207 (40%), Gaps = 34/207 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL--PDGKTVAV-----KKFSQAKTQGHRQFTAEMETLGKVK 237
L L++ L DG FG V + P GKTV+V K ++ + F E+ + +
Sbjct: 14 LRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLD 73
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL- 296
H+NL+ L G K+ V E GSL LR G H +L RY + + G
Sbjct: 74 HRNLIRLYGVVLTPPMKM-VTELAPLGSLLDRLRKHQG-HFLLGTLSRYAVQVAEGMGYL 131
Query: 297 ---AFLHQD------------------FGLARLISACETH--VSTDIAGTLGYIPPEYGQ 333
F+H+D FGL R + + H + + PE +
Sbjct: 132 ESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLK 191
Query: 334 SRMSTTRGDVYSFGVILLELVT-AKEP 359
+R + D + FGV L E+ T +EP
Sbjct: 192 TRTFSHASDTWMFGVTLWEMFTYGQEP 218
>pdb|1PY5|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With
Inhibitor
Length = 326
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 134/346 (38%), Gaps = 102/346 (29%)
Query: 158 YNLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQ 217
Y++ S S S PL + ++ + +L+ + + G FG V++ G+ VAVK FS
Sbjct: 8 YDMTTSGSGSGLPLLVQRTIARTIVLQ----ESIGKGRFGEVWRGKWR-GEEVAVKIFS- 61
Query: 218 AKTQGHRQFTAEMETLGKV--KHQNLVLLLGYCSFDEEK-------LLVYEYMVNGSLDL 268
++ R + E E V +H+N+ LG+ + D + LV +Y +GSL
Sbjct: 62 --SREERSWFREAEIYQTVMLRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFD 116
Query: 269 WLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------------- 301
+L T + E + K+A S+A GLA LH
Sbjct: 117 YLNRYTVTVEGM-----IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG 171
Query: 302 -----DFGLA-RLISACETHVSTDIA-----GTLGYIPPEYGQSRM------STTRGDVY 344
D GLA R SA +T DIA GT Y+ PE + S R D+Y
Sbjct: 172 TCCIADLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIY 228
Query: 345 SFGVILLELVTAKE----------------PTGPEFQEKEGANLVGWVFQKMKKQQADDV 388
+ G++ E+ P+ P +E M+K +
Sbjct: 229 AMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE-------------MRKVVCEQK 275
Query: 389 LDPTVLNAGSKPMMLK-MLRIAADCVADNPATRPTMLHVLKLLHEI 433
L P + N L+ M +I +C N A R T L + K L ++
Sbjct: 276 LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 321
>pdb|1T46|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C-kit Tyrosine Kinase
Length = 313
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 113/302 (37%), Gaps = 62/302 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQ-FTAEM 230
++ P +L+ L G FG V +AT TVAVK + R+ +E+
Sbjct: 18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL 77
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------------ 277
+ L + H N+V LLG C+ L++ EY G L +LR S
Sbjct: 78 KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 137
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQDFGL-------ARLISACETHVSTDIAG 322
LD + A+G+AFL H+D R+ C+ ++ DI
Sbjct: 138 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN 197
Query: 323 TLGYI------------PPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
Y+ PE + + T DV+S+G+ L EL + P
Sbjct: 198 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP----- 252
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
V F KM K + +L P A +M I C +P RPT +++L+
Sbjct: 253 --VDSKFYKMIK-EGFRMLSPEHAPA-------EMYDIMKTCWDADPLKRPTFKQIVQLI 302
Query: 431 HE 432
+
Sbjct: 303 EK 304
>pdb|1B6C|B Chain B, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|D Chain D, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|F Chain F, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1B6C|H Chain H, Crystal Structure Of The Cytoplasmic Domain Of The Type I
Tgf-Beta Receptor In Complex With Fkbp12
pdb|1IAS|A Chain A, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|B Chain B, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|C Chain C, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|D Chain D, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|1IAS|E Chain E, Cytoplasmic Domain Of Unphosphorylated Type I Tgf-Beta
Receptor Crystallized Without Fkbp12
pdb|3FAA|A Chain A, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|B Chain B, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|C Chain C, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|D Chain D, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3FAA|E Chain E, Crystal Structure Of Tgfbri Complexed With A 2-
Aminoimidazole Inhibitor
pdb|3KCF|A Chain A, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|B Chain B, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|C Chain C, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|D Chain D, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|3KCF|E Chain E, Crystal Structure Of Tgfbri Complexed With A Pyrazolone
Inhibitor
pdb|2X7O|A Chain A, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|B Chain B, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|C Chain C, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|D Chain D, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
pdb|2X7O|E Chain E, Crystal Structure Of Tgfbri Complexed With An Indolinone
Inhibitor
Length = 342
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 134/346 (38%), Gaps = 102/346 (29%)
Query: 158 YNLYLSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQ 217
Y++ S S S PL + ++ + +L+ + + G FG V++ G+ VAVK FS
Sbjct: 21 YDMTTSGSGSGLPLLVQRTIARTIVLQ----ESIGKGRFGEVWRGKW-RGEEVAVKIFS- 74
Query: 218 AKTQGHRQFTAEMETLGKV--KHQNLVLLLGYCSFDEEK-------LLVYEYMVNGSLDL 268
++ R + E E V +H+N+ LG+ + D + LV +Y +GSL
Sbjct: 75 --SREERSWFREAEIYQTVMLRHENI---LGFIAADNKDNGTWTQLWLVSDYHEHGSLFD 129
Query: 269 WLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------------- 301
+L T + E + K+A S+A GLA LH
Sbjct: 130 YLNRYTVTVEGM-----IKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNG 184
Query: 302 -----DFGLA-RLISACETHVSTDIA-----GTLGYIPPEYGQSRM------STTRGDVY 344
D GLA R SA +T DIA GT Y+ PE + S R D+Y
Sbjct: 185 TCCIADLGLAVRHDSATDT---IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIY 241
Query: 345 SFGVILLELVTAKE----------------PTGPEFQEKEGANLVGWVFQKMKKQQADDV 388
+ G++ E+ P+ P +E M+K +
Sbjct: 242 AMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEE-------------MRKVVCEQK 288
Query: 389 LDPTVLNAGSKPMMLK-MLRIAADCVADNPATRPTMLHVLKLLHEI 433
L P + N L+ M +I +C N A R T L + K L ++
Sbjct: 289 LRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQL 334
>pdb|3Q4T|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3Q4T|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dorsomorphin
pdb|3SOC|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|3SOC|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With A Quinazolin
pdb|4ASX|A Chain A, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
pdb|4ASX|B Chain B, Crystal Structure Of Activin Receptor Type-Iia (Acvr2a)
Kinase Domain In Complex With Dihydro-Bauerine C
Length = 322
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 62/221 (28%), Positives = 95/221 (42%), Gaps = 59/221 (26%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV 242
+ L L+++ G FG V+KA L + + VAVK F Q Q E+ +L +KH+N++
Sbjct: 24 MPLQLLEVKARGRFGCVWKAQLLN-EYVAVKIFPIQDKQS-WQNEYEVYSLPGMKHENIL 81
Query: 243 LLLGY----CSFDEEKLLVYEYMVNGSLDLWLR-NATGSHEVLDRAKRYKIACSSARGLA 297
+G S D + L+ + GSL +L+ N +E+ IA + ARGLA
Sbjct: 82 QFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKANVVSWNELC------HIAETMARGLA 135
Query: 298 FLHQ----------------------------------DFGLARLI----SACETHVSTD 319
+LH+ DFGLA SA +TH
Sbjct: 136 YLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQV- 194
Query: 320 IAGTLGYIPPEYGQ-----SRMSTTRGDVYSFGVILLELVT 355
GT Y+ PE + R + R D+Y+ G++L EL +
Sbjct: 195 --GTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELAS 233
>pdb|1PKG|A Chain A, Structure Of A C-kit Kinase Product Complex
pdb|1PKG|B Chain B, Structure Of A C-kit Kinase Product Complex
Length = 329
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 113/302 (37%), Gaps = 62/302 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQ-FTAEM 230
++ P +L+ L G FG V +AT TVAVK + R+ +E+
Sbjct: 34 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL 93
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------------ 277
+ L + H N+V LLG C+ L++ EY G L +LR S
Sbjct: 94 KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 153
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQDFGL-------ARLISACETHVSTDIAG 322
LD + A+G+AFL H+D R+ C+ ++ DI
Sbjct: 154 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN 213
Query: 323 TLGYI------------PPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
Y+ PE + + T DV+S+G+ L EL + P
Sbjct: 214 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP----- 268
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
V F KM K + +L P A +M I C +P RPT +++L+
Sbjct: 269 --VDSKFYKMIK-EGFRMLSPEHAPA-------EMYDIMKTCWDADPLKRPTFKQIVQLI 318
Query: 431 HE 432
+
Sbjct: 319 EK 320
>pdb|3G0E|A Chain A, Kit Kinase Domain In Complex With Sunitinib
Length = 336
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 113/302 (37%), Gaps = 62/302 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQ-FTAEM 230
++ P +L+ L G FG V +AT TVAVK + R+ +E+
Sbjct: 41 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL 100
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------------ 277
+ L + H N+V LLG C+ L++ EY G L +LR S
Sbjct: 101 KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 160
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQDFGL-------ARLISACETHVSTDIAG 322
LD + A+G+AFL H+D R+ C+ ++ DI
Sbjct: 161 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN 220
Query: 323 TLGYI------------PPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
Y+ PE + + T DV+S+G+ L EL + P
Sbjct: 221 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP----- 275
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
V F KM K + +L P A +M I C +P RPT +++L+
Sbjct: 276 --VDSKFYKMIK-EGFRMLSPEHAPA-------EMYDIMKTCWDADPLKRPTFKQIVQLI 325
Query: 431 HE 432
+
Sbjct: 326 EK 327
>pdb|1T45|A Chain A, Structural Basis For The Autoinhibition And Sti-571
Inhibition Of C- Kit Tyrosine Kinase
Length = 331
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 113/302 (37%), Gaps = 62/302 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQ-FTAEM 230
++ P +L+ L G FG V +AT TVAVK + R+ +E+
Sbjct: 36 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL 95
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------------ 277
+ L + H N+V LLG C+ L++ EY G L +LR S
Sbjct: 96 KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 155
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQDFGL-------ARLISACETHVSTDIAG 322
LD + A+G+AFL H+D R+ C+ ++ DI
Sbjct: 156 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKN 215
Query: 323 TLGYI------------PPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
Y+ PE + + T DV+S+G+ L EL + P
Sbjct: 216 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP----- 270
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
V F KM K + +L P A +M I C +P RPT +++L+
Sbjct: 271 --VDSKFYKMIK-EGFRMLSPEHAPA-------EMYDIMKTCWDADPLKRPTFKQIVQLI 320
Query: 431 HE 432
+
Sbjct: 321 EK 322
>pdb|3Q4Z|A Chain A, Structure Of Unphosphorylated Pak1 Kinase Domain
pdb|3Q4Z|B Chain B, Structure Of Unphosphorylated Pak1 Kinase Domain
Length = 306
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 88/214 (41%), Gaps = 32/214 (14%)
Query: 171 LRINISMFQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAE 229
LRI +S+ P K T + + G GTVY A + G+ VA+++ + + E
Sbjct: 10 LRIIVSV-GDPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINE 68
Query: 230 METLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA 289
+ + + K+ N+V L +E +V EY+ GSL + +D + +
Sbjct: 69 ILVMRENKNPNIVNYLDSYLVGDELWVVMEYLAGGSL-----TDVVTETCMDEGQIAAVC 123
Query: 290 CSSARGLAFLHQ------------------------DFGLARLISACETHVSTDIAGTLG 325
+ L FLH DFG I+ ++ ST + GT
Sbjct: 124 RECLQALEFLHSNQVIHRNIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST-MVGTPY 182
Query: 326 YIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
++ PE + + D++S G++ +E++ + P
Sbjct: 183 WMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPP 216
>pdb|3G0F|A Chain A, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
pdb|3G0F|B Chain B, Kit Kinase Domain Mutant D816h In Complex With Sunitinib
Length = 336
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 76/302 (25%), Positives = 115/302 (38%), Gaps = 62/302 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATL------PDGKTVAVKKFSQAKTQGHRQ-FTAEM 230
++ P +L+ L G FG V +AT TVAVK + R+ +E+
Sbjct: 41 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSEL 100
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------------ 277
+ L + H N+V LLG C+ L++ EY G L +LR S
Sbjct: 101 KVLSYLGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMED 160
Query: 278 --EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISA 311
LD + A+G+AFL H+ DFGLAR I
Sbjct: 161 DELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARHIKN 220
Query: 312 CETHVSTDIAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGA 370
+V A + ++ PE + + T DV+S+G+ L EL + P
Sbjct: 221 DSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMP----- 275
Query: 371 NLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLL 430
V F KM K + +L P A +M I C +P RPT +++L+
Sbjct: 276 --VDSKFYKMIK-EGFRMLSPEHAPA-------EMYDIMKTCWDADPLKRPTFKQIVQLI 325
Query: 431 HE 432
+
Sbjct: 326 EK 327
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 27 IKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 86
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 87 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 145
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 146 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 205
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 206 QSDVWSYGVTVWELMT 221
>pdb|3PP0|A Chain A, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3PP0|B Chain B, Crystal Structure Of The Kinase Domain Of Human Her2
(Erbb2).
pdb|3RCD|A Chain A, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|B Chain B, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|C Chain C, Her2 Kinase Domain Complexed With Tak-285
pdb|3RCD|D Chain D, Her2 Kinase Domain Complexed With Tak-285
Length = 338
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 29/200 (14%)
Query: 184 KLTLVDILEDGGFGTVYKAT-LPDGKT----VAVKKFSQAKT-QGHRQFTAEMETLGKVK 237
+L V +L G FGTVYK +PDG+ VA+K + + + +++ E + V
Sbjct: 18 ELRKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVG 77
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN---ATGSHEVLDRAKRYKIACSSAR 294
+ LLG C LV + M G L +R GS ++L+ + S
Sbjct: 78 SPYVSRLLGIC-LTSTVQLVTQLMPYGCLLDHVRENRGRLGSQDLLNWCMQIAKGMSYLE 136
Query: 295 GLAFLHQ------------------DFGLARLISACETHVSTDIAGT-LGYIPPEYGQSR 335
+ +H+ DFGLARL+ ET D + ++ E R
Sbjct: 137 DVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILRR 196
Query: 336 MSTTRGDVYSFGVILLELVT 355
T + DV+S+GV + EL+T
Sbjct: 197 RFTHQSDVWSYGVTVWELMT 216
>pdb|2A19|B Chain B, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A19|C Chain C, Pkr Kinase Domain- Eif2alpha- Amp-Pnp Complex.
pdb|2A1A|B Chain B, Pkr Kinase Domain-Eif2alpha Complex
Length = 284
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 84/208 (40%), Gaps = 49/208 (23%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLG 246
++++ GGFG V+KA DGKT +K+ + R E++ L K+ H N+V G
Sbjct: 16 IELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNNEKAER----EVKALAKLDHVNIVHYNG 71
Query: 247 -YCSFDEEK---------------LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIAC 290
+ FD + + E+ G+L+ W+ G E LD+ ++
Sbjct: 72 CWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG--EKLDKVLALELFE 129
Query: 291 SSARGLAFLHQ------------------------DFGLARLISACETHVSTDIAGTLGY 326
+G+ ++H DFGL + + GTL Y
Sbjct: 130 QITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRXRS--KGTLRY 187
Query: 327 IPPEYGQSRMSTTRGDVYSFGVILLELV 354
+ PE S+ D+Y+ G+IL EL+
Sbjct: 188 MSPEQISSQDYGKEVDLYALGLILAELL 215
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 20 IKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 80 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 198
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 199 QSDVWSYGVTVWELMT 214
>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PK9|C Chain C, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The
Phosphate-responsive Signal Transduction Pathway
pdb|2PMI|A Chain A, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
pdb|2PMI|C Chain C, Structure Of The Pho85-Pho80 Cdk-Cyclin Complex Of The
Phosphate- Responsive Signal Transduction Pathway With
Bound Atp-Gamma-S
Length = 317
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 44/221 (19%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQGHRQFTA-EMETLGKVKHQNLVLLL 245
++ L +G + TVYK G VA+K+ +G E+ + ++KH+N+V L
Sbjct: 10 LEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLY 69
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV--------LDRAKRYKIACSSARGLA 297
+ + LV+E+M N L+ S V L+ K ++ +GLA
Sbjct: 70 DVIHTENKLTLVFEFMDND-----LKKYMDSRTVGNTPRGLELNLVKYFQWQL--LQGLA 122
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ 333
F H+ DFGLAR S+++ TL Y P+
Sbjct: 123 FCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVV-TLWYRAPDVLM 181
Query: 334 -SRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLV 373
SR +T D++S G IL E++T K P P ++E L+
Sbjct: 182 GSRTYSTSIDIWSCGCILAEMITGK-PLFPGTNDEEQLKLI 221
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 27 IKVLSSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 86
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 87 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 145
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 146 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 205
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 206 QSDVWSYGVTVWELMT 221
>pdb|1VJY|A Chain A, Crystal Structure Of A Naphthyridine Inhibitor Of Human
Tgf- Beta Type I Receptor
pdb|3GXL|A Chain A, Alk-5 Kinase Complex With Gw857175
pdb|3HMM|A Chain A, Structure Of Alk5 + Gw855857
Length = 303
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 121/319 (37%), Gaps = 98/319 (30%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKV--KHQNLV 242
+ L + + G FG V++ G+ VAVK FS ++ R + E E V +H+N+
Sbjct: 5 IVLQESIGKGRFGEVWRGKWR-GEEVAVKIFS---SREERSWFREAEIYQTVMLRHENI- 59
Query: 243 LLLGYCSFDEEK-------LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARG 295
LG+ + D + LV +Y +GSL +L T + E + K+A S+A G
Sbjct: 60 --LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGM-----IKLALSTASG 112
Query: 296 LAFLHQ--------------------------------DFGLA-RLISACETHVSTDIA- 321
LA LH D GLA R SA +T DIA
Sbjct: 113 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT---IDIAP 169
Query: 322 ----GTLGYIPPEYGQSRM------STTRGDVYSFGVILLELVTAKE------------- 358
GT Y+ PE + S R D+Y+ G++ E+
Sbjct: 170 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 229
Query: 359 ---PTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK-MLRIAADCVA 414
P+ P +E M+K + L P + N L+ M +I +C
Sbjct: 230 DLVPSDPSVEE-------------MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 276
Query: 415 DNPATRPTMLHVLKLLHEI 433
N A R T L + K L ++
Sbjct: 277 ANGAARLTALRIKKTLSQL 295
>pdb|2WOT|A Chain A, Alk5 In Complex With 4-((5,6-Dimethyl-2-(2-Pyridyl)-3-
Pyridyl)oxy)-N-(3,4,5-Trimethoxyphenyl)pyridin-2-Amine
pdb|2WOU|A Chain A, Alk5 In Complex With
4-((4-((2,6-Dimethyl-3-Pyridyl)oxy)-2-
Pyridyl)amino)benzenesulfonamide
Length = 306
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 121/319 (37%), Gaps = 98/319 (30%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKV--KHQNLV 242
+ L + + G FG V++ G+ VAVK FS ++ R + E E V +H+N+
Sbjct: 8 IVLQESIGKGRFGEVWRGKWR-GEEVAVKIFS---SREERSWFREAEIYQTVMLRHENI- 62
Query: 243 LLLGYCSFDEEK-------LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARG 295
LG+ + D + LV +Y +GSL +L T + E + K+A S+A G
Sbjct: 63 --LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGM-----IKLALSTASG 115
Query: 296 LAFLHQ--------------------------------DFGLA-RLISACETHVSTDIA- 321
LA LH D GLA R SA +T DIA
Sbjct: 116 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT---IDIAP 172
Query: 322 ----GTLGYIPPEYGQSRM------STTRGDVYSFGVILLELVTAKE------------- 358
GT Y+ PE + S R D+Y+ G++ E+
Sbjct: 173 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 232
Query: 359 ---PTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK-MLRIAADCVA 414
P+ P +E M+K + L P + N L+ M +I +C
Sbjct: 233 DLVPSDPSVEE-------------MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 279
Query: 415 DNPATRPTMLHVLKLLHEI 433
N A R T L + K L ++
Sbjct: 280 ANGAARLTALRIKKTLSQL 298
>pdb|1RW8|A Chain A, Crystal Structure Of Tgf-Beta Receptor I Kinase With Atp
Site Inhibitor
Length = 301
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 121/319 (37%), Gaps = 98/319 (30%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKV--KHQNLV 242
+ L + + G FG V++ G+ VAVK FS ++ R + E E V +H+N+
Sbjct: 6 IVLQESIGKGRFGEVWRGKWR-GEEVAVKIFS---SREERSWFREAEIYQTVMLRHENI- 60
Query: 243 LLLGYCSFDEEK-------LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARG 295
LG+ + D + LV +Y +GSL +L T + E + K+A S+A G
Sbjct: 61 --LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGM-----IKLALSTASG 113
Query: 296 LAFLHQ--------------------------------DFGLA-RLISACETHVSTDIA- 321
LA LH D GLA R SA +T DIA
Sbjct: 114 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT---IDIAP 170
Query: 322 ----GTLGYIPPEYGQSRM------STTRGDVYSFGVILLELVTAKE------------- 358
GT Y+ PE + S R D+Y+ G++ E+
Sbjct: 171 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 230
Query: 359 ---PTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK-MLRIAADCVA 414
P+ P +E M+K + L P + N L+ M +I +C
Sbjct: 231 DLVPSDPSVEE-------------MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 277
Query: 415 DNPATRPTMLHVLKLLHEI 433
N A R T L + K L ++
Sbjct: 278 ANGAARLTALRIKKTLSQL 296
>pdb|3TZM|A Chain A, Tgf-Beta Receptor Type 1 In Complex With Sb431542
Length = 309
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 121/319 (37%), Gaps = 98/319 (30%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKV--KHQNLV 242
+ L + + G FG V++ G+ VAVK FS ++ R + E E V +H+N+
Sbjct: 11 IVLQESIGKGRFGEVWRGKWR-GEEVAVKIFS---SREERSWFREAEIYQTVMLRHENI- 65
Query: 243 LLLGYCSFDEEK-------LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARG 295
LG+ + D + LV +Y +GSL +L T + E + K+A S+A G
Sbjct: 66 --LGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGM-----IKLALSTASG 118
Query: 296 LAFLHQ--------------------------------DFGLA-RLISACETHVSTDIA- 321
LA LH D GLA R SA +T DIA
Sbjct: 119 LAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDT---IDIAP 175
Query: 322 ----GTLGYIPPEYGQSRM------STTRGDVYSFGVILLELVTAKE------------- 358
GT Y+ PE + S R D+Y+ G++ E+
Sbjct: 176 NHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYY 235
Query: 359 ---PTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK-MLRIAADCVA 414
P+ P +E M+K + L P + N L+ M +I +C
Sbjct: 236 DLVPSDPSVEE-------------MRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWY 282
Query: 415 DNPATRPTMLHVLKLLHEI 433
N A R T L + K L ++
Sbjct: 283 ANGAARLTALRIKKTLSQL 301
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 80 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 198
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 199 QSDVWSYGVTVWELMT 214
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 23 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 82
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 83 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 141
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 142 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 201
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 202 QSDVWSYGVTVWELMT 217
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 21 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 80
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 81 CRLLGICLTSTVQLIM-QLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 139
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 140 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 199
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 200 QSDVWSYGVTVWELMT 215
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 21 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 80
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 81 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 139
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 140 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 199
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 200 QSDVWSYGVTVWELMT 215
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 22 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 81
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 82 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 140
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 141 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 200
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 201 QSDVWSYGVTVWELMT 216
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 24 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 83
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 84 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 142
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 143 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 202
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 203 QSDVWSYGVTVWELMT 218
>pdb|1F3M|C Chain C, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1F3M|D Chain D, Crystal Structure Of Human SerineTHREONINE KINASE PAK1
pdb|1YHW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With One Point
Mutations (K299r)
Length = 297
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 82/204 (40%), Gaps = 31/204 (15%)
Query: 181 PLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
P K T + + G GTVY A + G+ VA+++ + + E+ + + K+
Sbjct: 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP 77
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
N+V L +E +V EY+ GSL + +D + + + L FL
Sbjct: 78 NIVNYLDSYLVGDELWVVMEYLAGGSL-----TDVVTETCMDEGQIAAVCRECLQALEFL 132
Query: 300 HQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
H DFG I+ ++ ST + GT ++ PE +
Sbjct: 133 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST-MVGTPYWMAPEVVTRK 191
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
+ D++S G++ +E++ + P
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|2OGV|A Chain A, Crystal Structure Of The Autoinhibited Human C-Fms Kinase
Domain
Length = 317
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 110/297 (37%), Gaps = 60/297 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF------SQAKTQGHRQFTAEM 230
++ P L L G FG V +AT GK AV K S A +E+
Sbjct: 33 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 92
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------EVLDRA 283
+ + + +H+N+V LLG C+ L++ EY G L +LR + L+
Sbjct: 93 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELR 152
Query: 284 KRYKIACSSARGLAFL------HQ------------------DFGLARLISACETHVSTD 319
+ A+G+AFL H+ DFGLAR I ++
Sbjct: 153 DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKG 212
Query: 320 IAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQ 378
A + ++ PE + T + DV+S+G++L E+ + P LV F
Sbjct: 213 NARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI-------LVNSKFY 265
Query: 379 KMKK---QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
K+ K Q A P + I C A P RPT + L E
Sbjct: 266 KLVKDGYQMAQPAFAPK-----------NIYSIMQACWALEPTHRPTFQQICSFLQE 311
>pdb|2I0V|A Chain A, C-Fms Tyrosine Kinase In Complex With A Quinolone
Inhibitor
pdb|2I0Y|A Chain A, Cfms Tyrosine Kinase (Fgf Kid) In Complex With An
Arylamide Inhibitor
pdb|3DPK|A Chain A, Cfms Tyrosine Kinase In Complex With A Pyridopyrimidinone
Inhibitor
pdb|3KRJ|A Chain A, Cfms Tyrosine Kinase In Complex With
4-Cyano-1h-Imidazole-2-Carboxylic Acid
(2-Cyclohex-1-Enyl-4-Piperidin-4-Yl-Phenyl)-Amide
pdb|3KRL|A Chain A, Cfms Tyrosine Kinase In Complex With
5-Cyano-Furan-2-Carboxylic Acid
[4-(4-Methyl-Piperazin-1-Yl)-2-Piperidin-1-Yl-Phenyl]-
Amide
Length = 335
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 112/303 (36%), Gaps = 66/303 (21%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF------SQAKTQGHRQFTAEM 230
++ P L L G FG V +AT GK AV K S A +E+
Sbjct: 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 100
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---------NATGSH--- 277
+ + + +H+N+V LLG C+ L++ EY G L +LR + SH
Sbjct: 101 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKRPPGLEYSYNPSHNPE 160
Query: 278 EVLDRAKRYKIACSSARGLAFL------HQ------------------DFGLARLISACE 313
E L + A+G+AFL H+ DFGLAR I
Sbjct: 161 EQLSSRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDS 220
Query: 314 THVSTDIAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANL 372
++ A + ++ PE + T + DV+S+G++L E+ + P L
Sbjct: 221 NYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI-------L 273
Query: 373 VGWVFQKMKK---QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKL 429
V F K+ K Q A P + I C A P RPT +
Sbjct: 274 VNSKFYKLVKDGYQMAQPAFAPK-----------NIYSIMQACWALEPTHRPTFQQICSF 322
Query: 430 LHE 432
L E
Sbjct: 323 LQE 325
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 23 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 82
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 83 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 141
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 142 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 201
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 202 QSDVWSYGVTVWELMT 217
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 80 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 198
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 199 QSDVWSYGVTVWELMT 214
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 23 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 82
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 83 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 141
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 142 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 201
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 202 QSDVWSYGVTVWELMT 217
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 30 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 89
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 90 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 148
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 149 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 208
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 209 QSDVWSYGVTVWELMT 224
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 80 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 198
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 199 QSDVWSYGVTVWELMT 214
>pdb|2VWI|A Chain A, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|B Chain B, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|C Chain C, Structure Of The Osr1 Kinase, A Hypertension Drug Target
pdb|2VWI|D Chain D, Structure Of The Osr1 Kinase, A Hypertension Drug Target
Length = 303
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/308 (21%), Positives = 117/308 (37%), Gaps = 62/308 (20%)
Query: 162 LSSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKT 220
+S S P IN ++ L +++ G V A P + VA+K+ + K
Sbjct: 1 MSEDSSALPWSINRDDYE-------LQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKC 53
Query: 221 Q-GHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--ATGSH 277
Q + E++ + + H N+V +E LV + + GS+ +++ A G H
Sbjct: 54 QTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEH 113
Query: 278 E--VLDRAKRYKIACSSARGLAFLHQ------------------------DFGLARLISA 311
+ VLD + I GL +LH+ DFG++ ++
Sbjct: 114 KSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLAT 173
Query: 312 ----CETHVSTDIAGTLGYIPPEY-GQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQE 366
V GT ++ PE Q R + D++SFG+ +EL T P + +
Sbjct: 174 GGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAP----YHK 229
Query: 367 KEGANLVGWVFQKMKKQQADDVLDPTVLNAG--SKPMMLK----MLRIAADCVADNPATR 420
++ Q DP L G K M+ K ++ + C+ +P R
Sbjct: 230 YPPMKVLMLTLQN----------DPPSLETGVQDKEMLKKYGKSFRKMISLCLQKDPEKR 279
Query: 421 PTMLHVLK 428
PT +L+
Sbjct: 280 PTAAELLR 287
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 23 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 82
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 83 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 141
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 142 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 201
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 202 QSDVWSYGVTVWELMT 217
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 45 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 104
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 105 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 163
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 164 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 223
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 224 QSDVWSYGVTVWELMT 239
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 27 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 86
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 87 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 145
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 146 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 205
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 206 QSDVWSYGVTVWELMT 221
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 80 CRLLGICLTSTVQLIT-QLMPFGXLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 198
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 199 QSDVWSYGVTVWELMT 214
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 22 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 81
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 82 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 140
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 141 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 200
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 201 QSDVWSYGVTVWELMT 216
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 26 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 85
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 86 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 144
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 145 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 204
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 205 QSDVWSYGVTVWELMT 220
>pdb|3LCD|A Chain A, Inhibitor Bound To A Dfg-In Structure Of The Kinase Domain
Of Csf-1r
Length = 329
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 73/297 (24%), Positives = 110/297 (37%), Gaps = 60/297 (20%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF------SQAKTQGHRQFTAEM 230
++ P L L G FG V +AT GK AV K S A +E+
Sbjct: 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 100
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH------EVLDRA 283
+ + + +H+N+V LLG C+ L++ EY G L +LR + L+
Sbjct: 101 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEADLDKEDGRPLELR 160
Query: 284 KRYKIACSSARGLAFL------HQ------------------DFGLARLISACETHVSTD 319
+ A+G+AFL H+ DFGLAR I ++
Sbjct: 161 DLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKG 220
Query: 320 IAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQ 378
A + ++ PE + T + DV+S+G++L E+ + P LV F
Sbjct: 221 NARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI-------LVNSKFY 273
Query: 379 KMKK---QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHE 432
K+ K Q A P + I C A P RPT + L E
Sbjct: 274 KLVKDGYQMAQPAFAPK-----------NIYSIMQACWALEPTHRPTFQQICSFLQE 319
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 17 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 76
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 77 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAEGMNYLEDRRL 135
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 136 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 195
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 196 QSDVWSYGVTVWELMT 211
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 89/196 (45%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 14 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 73
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 74 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 132
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 133 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 192
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 193 QSDVWSYGVTVWELMT 208
>pdb|1YHV|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Two Point
Mutations (K299r, T423e)
pdb|2HY8|1 Chain 1, Pak1 Complex With St2001
Length = 297
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 31/204 (15%)
Query: 181 PLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
P K T + + G GTVY A + G+ VA+++ + + E+ + + K+
Sbjct: 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP 77
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
N+V L +E +V EY+ GSL + +D + + + L FL
Sbjct: 78 NIVNYLDSYLVGDELWVVMEYLAGGSL-----TDVVTETCMDEGQIAAVCRECLQALEFL 132
Query: 300 HQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
H DFG I+ E +++ GT ++ PE +
Sbjct: 133 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-EQSKRSEMVGTPYWMAPEVVTRK 191
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
+ D++S G++ +E++ + P
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|4AF3|A Chain A, Human Aurora B Kinase In Complex With Incenp And Vx-680
Length = 292
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 74/195 (37%), Gaps = 37/195 (18%)
Query: 194 GGFGTVYKATLPDGKTVAVKKF---SQAKTQG-HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A + K SQ + +G Q E+E + H N++ L Y
Sbjct: 34 GKFGNVYLAREKKSHFIVALKVLFKSQIEKEGVEHQLRREIEIQAHLHHPNILRLYNYF- 92
Query: 250 FDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH-------- 300
+D ++ L+ EY G L L+ + D + I A L + H
Sbjct: 93 YDRRRIYLILEYAPRGELYKELQKSC----TFDEQRTATIMEELADALMYCHGKKVIHRD 148
Query: 301 ----------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVY 344
DFG + + A T + GTL Y+PPE + RM + D++
Sbjct: 149 IKPENLLLGLKGELKIADFGWS--VHAPSLRRKT-MCGTLDYLPPEMIEGRMHNEKVDLW 205
Query: 345 SFGVILLELVTAKEP 359
GV+ EL+ P
Sbjct: 206 CIGVLCYELLVGNPP 220
>pdb|4BC6|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Novel Bosutinib Isoform 1, Previously Thought
To Be Bosutinib
Length = 293
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 59/277 (21%)
Query: 187 LVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVLLL 245
+V L DG FG VYKA + +A K + K++ + E+E L H +V LL
Sbjct: 15 IVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 74
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRA---KRYKIACSSA-RGLAFLHQ 301
G D + ++ E+ G++D + LDR + ++ C L FLH
Sbjct: 75 GAYYHDGKLWIMIEFCPGGAVDAIMLE-------LDRGLTEPQIQVVCRQMLEALNFLHS 127
Query: 302 ------------------------DFGL-ARLISACETHVSTDIAGTLGYIPPEYGQSR- 335
DFG+ A+ + + S GT ++ PE
Sbjct: 128 KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDS--FIGTPYWMAPEVVMCET 185
Query: 336 MSTT----RGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDP 391
M T + D++S G+ L+E+ EP E V K+ K +L P
Sbjct: 186 MKDTPYDYKADIWSLGITLIEMAQI-EPPHHELNPMR-------VLLKIAKSDPPTLLTP 237
Query: 392 TVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
+ + + L+IA D NP TRP+ +L+
Sbjct: 238 SKWSVEFR----DFLKIALD---KNPETRPSAAQLLE 267
>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4987655 And Mgamp-Pnp
pdb|3OS3|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In
Complex With Ch4858061 And Mgatp
Length = 307
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 98/251 (39%), Gaps = 34/251 (13%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 76
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 77 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 132
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 192
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIA 409
L+E+ + P P KE + +F+ + D +++ S L+
Sbjct: 193 LVEMAVGRYPIPPP-DAKEDSRPPMAIFELL-----DYIVNEPPPKLPSGVFSLEFQDFV 246
Query: 410 ADCVADNPATR 420
C+ NPA R
Sbjct: 247 NKCLIKNPAER 257
>pdb|3DAK|A Chain A, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|B Chain B, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|C Chain C, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
pdb|3DAK|D Chain D, Crystal Structure Of Domain-Swapped Osr1 Kinase Domain
Length = 290
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 43/277 (15%)
Query: 187 LVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQ-GHRQFTAEMETLGKVKHQNLVLL 244
L +++ G V A P + VA+K+ + K Q + E++ + + H N+V
Sbjct: 14 LQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSY 73
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRN--ATGSHE--VLDRAKRYKIACSSARGLAFLH 300
+E LV + + GS+ +++ A G H+ VLD + I GL +LH
Sbjct: 74 YTSFVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLH 133
Query: 301 Q------------------------DFGLARLISA----CETHVSTDIAGTLGYIPPEY- 331
+ DFG++ ++ V GT ++ PE
Sbjct: 134 KNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVM 193
Query: 332 GQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDP 391
Q R + D++SFG+ +EL T P + + ++ Q V D
Sbjct: 194 EQVRGYDFKADIWSFGITAIELATGAAP----YHKYPPMKVLMLTLQNDPPSLETGVQDK 249
Query: 392 TVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
+L K KM+ + C+ +P RPT +L+
Sbjct: 250 EMLKKYGKSFR-KMISL---CLQKDPEKRPTAAELLR 282
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 51/279 (18%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGK----TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+ L IL +G FG VY+ + K VAVK + T +++ F +E + + H
Sbjct: 26 VVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHP 85
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
++V L+G +E ++ E G L +L S +VL C + +A+L
Sbjct: 86 HIVKLIGIIE-EEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQIC---KAMAYL 141
Query: 300 HQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
DFGL+R I + + ++ + ++ PE R
Sbjct: 142 ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFR 201
Query: 336 MSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVL 394
TT DV+ F V + E+++ K+P F E +++G V +K + D+ P +
Sbjct: 202 RFTTASDVWMFAVCMWEILSFGKQP----FFWLENKDVIG-VLEKGDRLPKPDLCPPVLY 256
Query: 395 NAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
++ C +P+ RP ++ L ++
Sbjct: 257 TLMTR------------CWDYDPSDRPRFTELVCSLSDV 283
>pdb|2J7T|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
Bound To Su11274
pdb|4AOT|A Chain A, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4AOT|B Chain B, Crystal Structure Of Human Serine Threonine Kinase-10
(Lok) Bound To Gw830263a
pdb|4EQU|A Chain A, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
pdb|4EQU|B Chain B, Human Stk-10 (Lok) Kinase Domain In Dfg-Out Conformation
With Inhibitor Dsa-7
Length = 302
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 107/277 (38%), Gaps = 59/277 (21%)
Query: 187 LVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVLLL 245
+V L DG FG VYKA + +A K + K++ + E+E L H +V LL
Sbjct: 23 IVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLL 82
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRA---KRYKIACSSA-RGLAFLHQ 301
G D + ++ E+ G++D + LDR + ++ C L FLH
Sbjct: 83 GAYYHDGKLWIMIEFCPGGAVDAIMLE-------LDRGLTEPQIQVVCRQMLEALNFLHS 135
Query: 302 ------------------------DFGL-ARLISACETHVSTDIAGTLGYIPPEYGQSR- 335
DFG+ A+ + + S GT ++ PE
Sbjct: 136 KRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDS--FIGTPYWMAPEVVMCET 193
Query: 336 MSTT----RGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDP 391
M T + D++S G+ L+E+ EP E V K+ K +L P
Sbjct: 194 MKDTPYDYKADIWSLGITLIEMAQI-EPPHHELNPMR-------VLLKIAKSDPPTLLTP 245
Query: 392 TVLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
+ + + L+IA D NP TRP+ +L+
Sbjct: 246 SKWSVEFR----DFLKIALD---KNPETRPSAAQLLE 275
>pdb|2VRX|A Chain A, Structure Of Aurora B Kinase In Complex With Zm447439
pdb|2VRX|B Chain B, Structure Of Aurora B Kinase In Complex With Zm447439
Length = 285
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/267 (22%), Positives = 99/267 (37%), Gaps = 51/267 (19%)
Query: 174 NISMFQQPLLKLTLVDI-----LEDGGFGTVYKATLPDGKTVAVKKF---SQAKTQG-HR 224
N ++ + P K T+ D L G FG VY A K + K SQ + +G
Sbjct: 1 NTALAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEH 60
Query: 225 QFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL---------RNATG 275
Q E+E ++H N++ + Y + L+ E+ G L L R+AT
Sbjct: 61 QLRREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATF 120
Query: 276 SHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACE-----------THVST----DI 320
E+ D A +H+D L+ + H + +
Sbjct: 121 MEELAD-------ALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRXM 173
Query: 321 AGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKM 380
GTL Y+PPE + + + D++ GV+ E + P + +V
Sbjct: 174 CGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV----- 228
Query: 381 KKQQADDVLDPTVLNAGSKPMMLKMLR 407
D+ P L+ GSK ++ K+LR
Sbjct: 229 ------DLKFPPFLSDGSKDLISKLLR 249
>pdb|3KEX|A Chain A, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
pdb|3KEX|B Chain B, Crystal Structure Of The Catalytically Inactive Kinase
Domain Of The Human Epidermal Growth Factor Receptor 3
(Her3)
Length = 325
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 97/218 (44%), Gaps = 37/218 (16%)
Query: 169 GPLRINISMFQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVK---KFSQAKT--QG 222
G +++ +F++ +L + +L G FGTV+K +P+G+++ + K + K+ Q
Sbjct: 1 GAMKVLARIFKE--TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQS 58
Query: 223 HRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDR 282
+ T M +G + H ++V LLG C +L V +Y+ GSL +R G+ L
Sbjct: 59 FQAVTDHMLAIGSLDHAHIVRLLGLCPGSSLQL-VTQYLPLGSLLDHVRQHRGA---LGP 114
Query: 283 AKRYKIACSSARGLAFL------HQDFGLARLISACETHVSTDIAGTLGYIPPE-----Y 331
A+G+ +L H++ ++ + V G +PP+ Y
Sbjct: 115 QLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLY 174
Query: 332 GQSRMS--------------TTRGDVYSFGVILLELVT 355
+++ T + DV+S+GV + EL+T
Sbjct: 175 SEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMT 212
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 22 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 81
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 82 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 140
Query: 299 LHQDFGLARLISACETHVS-TDI--AGTLGYIPPEYGQS----------------RMSTT 339
+H+D ++ HV TD A LG EY R+ T
Sbjct: 141 VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 200
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 201 QSDVWSYGVTVWELMT 216
>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
pdb|1S9I|B Chain B, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp
Length = 354
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/194 (26%), Positives = 78/194 (40%), Gaps = 30/194 (15%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V K P G +A K + K Q E++ L + +V G D
Sbjct: 27 GNGGVVTKVQHRPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 86
Query: 252 EEKLLVYEYMVNGSLDLWLRNATG-SHEVLDRAKRYKIACSSARGLAFL-------HQDF 303
E + E+M GSLD L+ A E+L K++ + RGLA+L H+D
Sbjct: 87 GEISICMEHMDGGSLDQVLKEAKRIPEEILG-----KVSIAVLRGLAYLREKHQIMHRDV 141
Query: 304 GLARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGV 348
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 142 KPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGL 201
Query: 349 ILLELVTAKEPTGP 362
L+EL + P P
Sbjct: 202 SLVELAVGRYPIPP 215
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 22 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 81
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 82 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 140
Query: 299 LHQDFGLARLISACETHVS-TDI--AGTLGYIPPEYGQS----------------RMSTT 339
+H+D ++ HV TD A LG EY R+ T
Sbjct: 141 VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 200
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 201 QSDVWSYGVTVWELMT 216
>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly,
Lys240->arg, Met302- >leu) In Complex With
1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]-
Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea
pdb|3DJ5|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 290.
pdb|3DJ6|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 823.
pdb|3DJ7|A Chain A, Crystal Structure Of The Mouse Aurora-A Catalytic Domain
(Asn186->gly, Lys240->arg, Met302->leu) In Complex With
Compound 130.
pdb|3D15|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
1-(3-Chloro-Phenyl)-3-
{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)-
Ethyl]-Thiazol-2- Yl}-Urea [sns-314]
pdb|3D2I|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With 1-{5-[2-(1-Methyl-1h-
Pyrazolo[4,
3-D]pyrimidin-7-Ylamino)-Ethyl]-Thiazol-2-Yl}-3-
(3-Trifluoromethyl-Phenyl)-Urea
pdb|3D2K|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240-
>arg, Met302->leu) In Complex With
[7-(2-{2-[3-(3-Chloro-
Phenyl)-Ureido]-Thiazol-5-Yl}-Ethylamino)-Pyrazolo[4,3-
D]pyrimidin-1-Yl]-Acetic Acid
Length = 272
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 93/240 (38%), Gaps = 37/240 (15%)
Query: 194 GGFGTVYKATLPDGKTVAVKKF---SQAKTQG-HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + K +Q + G Q E+E ++H N++ L GY
Sbjct: 23 GKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 82
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------- 301
L+ EY G++ L+ + D + A L++ H
Sbjct: 83 DATRVYLILEYAPLGTVYRELQKLSR----FDEQRTATYITELANALSYCHSKRVIHRDI 138
Query: 302 ----------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYS 345
DFG + + A + +T + GTL Y+PPE + RM + D++S
Sbjct: 139 KPENLLLGSNGELKIADFGWS--VHAPSSRRTT-LCGTLDYLPPEMIEGRMHDEKVDLWS 195
Query: 346 FGVILLELVTAKEP-TGPEFQEK-EGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
GV+ E + P +QE + V + F + A D++ + + S+ + L
Sbjct: 196 LGVLCYEFLVGMPPFEAHTYQETYRRISRVEFTFPDFVTEGARDLISRLLKHNASQRLTL 255
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 24 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 83
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L++ + M G L ++R + GS +L+ + +
Sbjct: 84 CRLLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 142
Query: 299 LHQDFGLARLISACETHVS-TDI--AGTLGYIPPEYGQS----------------RMSTT 339
+H+D ++ HV TD A LG EY R+ T
Sbjct: 143 VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 202
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 203 QSDVWSYGVTVWELMT 218
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/279 (21%), Positives = 112/279 (40%), Gaps = 51/279 (18%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGK----TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQ 239
+ L IL +G FG VY+ + K VAVK + T +++ F +E + + H
Sbjct: 14 VVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHP 73
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
++V L+G +E ++ E G L +L S +VL C + +A+L
Sbjct: 74 HIVKLIGIIE-EEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQIC---KAMAYL 129
Query: 300 HQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
DFGL+R I + + ++ + ++ PE R
Sbjct: 130 ESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFR 189
Query: 336 MSTTRGDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVL 394
TT DV+ F V + E+++ K+P F E +++G V +K + D+ P +
Sbjct: 190 RFTTASDVWMFAVCMWEILSFGKQP----FFWLENKDVIG-VLEKGDRLPKPDLCPPVLY 244
Query: 395 NAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
++ C +P+ RP ++ L ++
Sbjct: 245 TLMTR------------CWDYDPSDRPRFTELVCSLSDV 271
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 110/274 (40%), Gaps = 51/274 (18%)
Query: 190 ILEDGGFGTVYKATLPDGK----TVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLL 244
IL +G FG VY+ + K VAVK + T +++ F +E + + H ++V L
Sbjct: 15 ILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKL 74
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
+G +E ++ E G L +L S +VL C + +A+L
Sbjct: 75 IGIIE-EEPTWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQIC---KAMAYLESINC 130
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGL+R I + + ++ + ++ PE R TT
Sbjct: 131 VHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTA 190
Query: 341 GDVYSFGVILLELVT-AKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSK 399
DV+ F V + E+++ K+P F E +++G V +K + D+ P + ++
Sbjct: 191 SDVWMFAVCMWEILSFGKQP----FFWLENKDVIG-VLEKGDRLPKPDLCPPVLYTLMTR 245
Query: 400 PMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
C +P+ RP ++ L ++
Sbjct: 246 ------------CWDYDPSDRPRFTELVCSLSDV 267
>pdb|3G2F|A Chain A, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
pdb|3G2F|B Chain B, Crystal Structure Of The Kinase Domain Of Bone
Morphogenetic Protein Receptor Type Ii (Bmpr2) At 2.35 A
Resolution
Length = 336
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 65/133 (48%), Gaps = 24/133 (18%)
Query: 182 LLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAE--METLGKVKHQ 239
L L L++++ G +G VYK +L D + VAVK FS A Q F E + + ++H
Sbjct: 12 LDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFANRQN---FINEKNIYRVPLMEHD 67
Query: 240 NLV-LLLGYCSFDE--------EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIAC 290
N+ ++G DE E LLV EY NGSL +L T D ++A
Sbjct: 68 NIARFIVG----DERVTADGRMEYLLVMEYYPNGSLXKYLSLHTS-----DWVSSCRLAH 118
Query: 291 SSARGLAFLHQDF 303
S RGLA+LH +
Sbjct: 119 SVTRGLAYLHTEL 131
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 22 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 81
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 82 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 140
Query: 299 LHQDFGLARLISACETHVS-TDI--AGTLGYIPPEYGQS----------------RMSTT 339
+H+D ++ HV TD A LG EY R+ T
Sbjct: 141 VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 200
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 201 QSDVWSYGVTVWELMT 216
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 20 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 79
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 80 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 138
Query: 299 LHQDFGLARLISACETHVS-TDI--AGTLGYIPPEYGQS----------------RMSTT 339
+H+D ++ HV TD A LG EY R+ T
Sbjct: 139 VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 198
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 199 QSDVWSYGVTVWELMT 214
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+K+ +A + + +++ E + V + ++
Sbjct: 27 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHV 86
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 87 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 145
Query: 299 LHQDFGLARLISACETHVS-TDI--AGTLGYIPPEYGQS----------------RMSTT 339
+H+D ++ HV TD A LG EY R+ T
Sbjct: 146 VHRDLAARNVLVKTPQHVKITDFGRAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 205
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 206 QSDVWSYGVTVWELMT 221
>pdb|3DAJ|A Chain A, Crystal Structure Of Aurora A Complexed With An Inhibitor
Discovered Through Site-Directed Dynamic Tethering
Length = 272
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 92/240 (38%), Gaps = 37/240 (15%)
Query: 194 GGFGTVYKATLPDGKTVAVKKF---SQAKTQG-HRQFTAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A K + K +Q + G Q E+E ++H N++ L GY
Sbjct: 23 GKFGNVYLARERQSKFILALKVLFKTQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFH 82
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------- 301
L+ EY G++ L+ + D + A L++ H
Sbjct: 83 DATRVYLILEYAPLGTVYRELQKLSR----FDEQRTATYITELANALSYCHSKRVIHRDI 138
Query: 302 ----------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYS 345
DFG + + A + T + GTL Y+PPE + RM + D++S
Sbjct: 139 KPENLLLGSNGELKIADFGWS--VHAPSSRRDT-LCGTLDYLPPEMIEGRMHDEKVDLWS 195
Query: 346 FGVILLELVTAKEP-TGPEFQEK-EGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
GV+ E + P +QE + V + F + A D++ + + S+ + L
Sbjct: 196 LGVLCYEFLVGMPPFEAHTYQETYRRISRVEFTFPDFVTEGARDLISRLLKHNASQRLTL 255
>pdb|3FXZ|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Lambda-Fl172
pdb|3FY0|A Chain A, Crystal Structure Of Pak1 Kinase Domain With Ruthenium
Complex Dw1
pdb|4DAW|A Chain A, Crystal Structure Of Pak1 Kinase Domain With The Ruthenium
Phthalimide Complex
Length = 297
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 181 PLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
P K T + + G GTVY A + G+ VA+++ + + E+ + + K+
Sbjct: 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP 77
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
N+V L +E +V EY+ GSL + +D + + + L FL
Sbjct: 78 NIVNYLDSYLVGDELWVVMEYLAGGSL-----TDVVTETCMDEGQIAAVCRECLQALEFL 132
Query: 300 HQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
H DFG I+ E + + GT ++ PE +
Sbjct: 133 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-EQSKRSXMVGTPYWMAPEVVTRK 191
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
+ D++S G++ +E++ + P
Sbjct: 192 AYGPKVDIWSLGIMAIEMIEGEPP 215
>pdb|3Q52|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain
pdb|3Q53|A Chain A, Structure Of Phosphorylated Pak1 Kinase Domain In Complex
With Atp
Length = 306
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/204 (21%), Positives = 80/204 (39%), Gaps = 31/204 (15%)
Query: 181 PLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
P K T + + G GTVY A + G+ VA+++ + + E+ + + K+
Sbjct: 19 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNP 78
Query: 240 NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
N+V L +E +V EY+ GSL + +D + + + L FL
Sbjct: 79 NIVNYLDSYLVGDELWVVMEYLAGGSL-----TDVVTETCMDEGQIAAVCRECLQALEFL 133
Query: 300 HQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
H DFG I+ E + + GT ++ PE +
Sbjct: 134 HSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-EQSKRSXMVGTPYWMAPEVVTRK 192
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
+ D++S G++ +E++ + P
Sbjct: 193 AYGPKVDIWSLGIMAIEMIEGEPP 216
>pdb|3ORI|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|B Chain B, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|C Chain C, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORI|D Chain D, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 1)
pdb|3ORK|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 2)
pdb|3ORL|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 3)
pdb|3ORO|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 4)
pdb|3ORP|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 5)
pdb|3ORT|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant
(Crystal Form 6)
Length = 311
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 107/273 (39%), Gaps = 56/273 (20%)
Query: 184 KLTLVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQG---HRQFTAEMETLGKVKHQ 239
+ L +IL GG V+ A L D + VAVK + + +F E + + H
Sbjct: 13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHP 72
Query: 240 NLVLLLGYCSFDEE------KLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA 293
+V + Y + + E +V EY V+G + LR+ + + + ++ +
Sbjct: 73 AIVAV--YDTGEAETPAGPLPYIVMEY-VDG---VTLRDIVHTEGPMTPKRAIEVIADAC 126
Query: 294 RGLAFLHQ------------------------DFGLARLISACETHVSTDIA--GTLGYI 327
+ L F HQ DFG+AR I+ V+ A GT Y+
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186
Query: 328 PPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADD 387
PE + R DVYS G +L E++T + P G + V +Q +++
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF-------TGDSPVSVAYQHVRE----- 234
Query: 388 VLDPTVLNAGSKPMMLKMLRIAADCVADNPATR 420
DP +A + + + + +A NP R
Sbjct: 235 --DPIPPSARHEGLSADLDAVVLKALAKNPENR 265
>pdb|4APC|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4APC|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
pdb|4B9D|A Chain A, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor.
pdb|4B9D|B Chain B, Crystal Structure Of Human Nima-Related Kinase 1 (Nek1)
With Inhibitor
Length = 350
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 89/209 (42%), Gaps = 30/209 (14%)
Query: 176 SMFQQPLLKLTLVDILEDGGFG-TVYKATLPDGKTVAVKKF--SQAKTQGHRQFTAEMET 232
+++ Q + K + + +G FG + + DG+ +K+ S+ ++ + E+
Sbjct: 17 NLYFQSMEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAV 76
Query: 233 LGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVNGSLDLWLRNATG----SHEVLDRAKRY 286
L +KH N+V SF+E +V +Y G L + G ++LD +
Sbjct: 77 LANMKHPNIVQYRE--SFEENGSLYIVMDYCEGGDLFKRINAQKGVLFQEDQILDWFVQI 134
Query: 287 KIACSSARGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIP 328
+A LH+D FG+AR++++ ++ GT Y+
Sbjct: 135 CLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-VELARACIGTPYYLS 193
Query: 329 PEYGQSRMSTTRGDVYSFGVILLELVTAK 357
PE +++ + D+++ G +L EL T K
Sbjct: 194 PEICENKPYNNKSDIWALGCVLYELCTLK 222
>pdb|3LMG|A Chain A, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
pdb|3LMG|B Chain B, Crystal Structure Of The Erbb3 Kinase Domain In Complex
With Amp-Pnp
Length = 344
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 89/203 (43%), Gaps = 35/203 (17%)
Query: 184 KLTLVDILEDGGFGTVYKAT-LPDGKTVAVK---KFSQAKT--QGHRQFTAEMETLGKVK 237
+L + +L G FGTV+K +P+G+++ + K + K+ Q + T M +G +
Sbjct: 32 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLD 91
Query: 238 HQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLA 297
H ++V LLG C +L V +Y+ GSL +R G+ L A+G+
Sbjct: 92 HAHIVRLLGLCPGSSLQL-VTQYLPLGSLLDHVRQHRGA---LGPQLLLNWGVQIAKGMY 147
Query: 298 FL------HQDFGLARLISACETHVSTDIAGTLGYIPPE-----YGQSRMS--------- 337
+L H++ ++ + V G +PP+ Y +++
Sbjct: 148 YLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESI 207
Query: 338 -----TTRGDVYSFGVILLELVT 355
T + DV+S+GV + EL+T
Sbjct: 208 HFGKYTHQSDVWSYGVTVWELMT 230
>pdb|2J51|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To 5-
Amino-3-((4-(Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2,4-Triazole-1-Carbothioamide
Length = 325
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 74/195 (37%), Gaps = 26/195 (13%)
Query: 191 LEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVLLLGYCS 249
L DG FG VYKA + +A K K++ + E++ L H N+V LL
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 250 FDEEKLLVYEYMVNGSLD---LWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLA 306
++ ++ E+ G++D L L ++ K+ A + +H+D
Sbjct: 105 YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAG 164
Query: 307 RL--------------ISACETHV---STDIAGTLGYIPPEYGQSRMSTTR-----GDVY 344
+ +SA T GT ++ PE S R DV+
Sbjct: 165 NILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVW 224
Query: 345 SFGVILLELVTAKEP 359
S G+ L+E+ + P
Sbjct: 225 SLGITLIEMAEIEPP 239
>pdb|3F69|A Chain A, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
pdb|3F69|B Chain B, Crystal Structure Of The Mycobacterium Tuberculosis Pknb
Mutant Kinase Domain In Complex With Kt5720
Length = 311
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/273 (22%), Positives = 107/273 (39%), Gaps = 56/273 (20%)
Query: 184 KLTLVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQG---HRQFTAEMETLGKVKHQ 239
+ L +IL GG V+ A L D + VAVK + + +F E + + H
Sbjct: 13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHP 72
Query: 240 NLVLLLGYCSFDEE------KLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA 293
+V + Y + + E +V EY V+G + LR+ + + + ++ +
Sbjct: 73 AIVAV--YDTGEAETPAGPLPYIVMEY-VDG---VTLRDIVHTEGPMTPKRAIEVIADAC 126
Query: 294 RGLAFLHQ------------------------DFGLARLISACETHV--STDIAGTLGYI 327
+ L F HQ DFG+AR I+ V + + GT Y+
Sbjct: 127 QALNFSHQNGIIHRDVKPANILISATNAVKVVDFGIARAIADSGNSVXQTAAVIGTAQYL 186
Query: 328 PPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADD 387
PE + R DVYS G +L E++T + P G + V +Q +++
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPPF-------TGDSPVSVAYQHVRE----- 234
Query: 388 VLDPTVLNAGSKPMMLKMLRIAADCVADNPATR 420
DP +A + + + + +A NP R
Sbjct: 235 --DPIPPSARHEGLSADLDAVVLKALAKNPENR 265
>pdb|3COK|A Chain A, Crystal Structure Of Plk4 Kinase
pdb|3COK|B Chain B, Crystal Structure Of Plk4 Kinase
Length = 278
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/269 (24%), Positives = 108/269 (40%), Gaps = 54/269 (20%)
Query: 189 DILEDGGFGTVYKA-TLPDGKTVAVK---KFSQAKTQGHRQFTAEMETLGKVKHQNLVLL 244
++L G F VY+A ++ G VA+K K + K ++ E++ ++KH +++ L
Sbjct: 17 NLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILEL 76
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRN-----------------ATG-----SHEVLDR 282
Y LV E NG ++ +L+N TG SH +L R
Sbjct: 77 YNYFEDSNYVYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHR 136
Query: 283 AKRYKIACSS---ARGLAFLHQDFGLA-RLISACETHVSTDIAGTLGYIPPEYGQSRMST 338
+ S+ R + DFGLA +L E H + + GT YI PE
Sbjct: 137 ----DLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYT--LCGTPNYISPEIATRSAHG 190
Query: 339 TRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGS 398
DV+S G + L+ + P + V + K D P+ L+ +
Sbjct: 191 LESDVWSLGCMFYTLLIGRPPFDTD-----------TVKNTLNKVVLADYEMPSFLSIEA 239
Query: 399 KPMMLKMLRIAADCVADNPATRPTMLHVL 427
K ++ ++LR NPA R ++ VL
Sbjct: 240 KDLIHQLLR-------RNPADRLSLSSVL 261
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 107/270 (39%), Gaps = 45/270 (16%)
Query: 187 LVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAK--TQGHRQFTAEMETLGKVKHQNLVL 243
L + L G F V + +P G+ A K + K + H++ E +KH N+V
Sbjct: 8 LFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVR 67
Query: 244 LLGYCSFDEEKLLVYEYMVNGSL--DLWLR----NATGSH---EVLDRAKRYKIA----- 289
L S + LV++ + G L D+ R A SH ++L+ +
Sbjct: 68 LHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHR 127
Query: 290 ---------CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
S ++G A DFGLA + + AGT GY+ PE +
Sbjct: 128 DLKPENLLLASKSKGAAVKLADFGLAIEVQG-DQQAWFGFAGTPGYLSPEVLRKDPYGKP 186
Query: 341 GDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGS 398
D+++ GVIL L+ P E Q + ++Q++ K A D P + +
Sbjct: 187 VDMWACGVILYILLVGYPPFWDEDQHR--------LYQQI-KAGAYDFPSPEWDTVTPEA 237
Query: 399 KPMMLKMLRIAADCVADNPATRPTMLHVLK 428
K ++ KML I NPA R T LK
Sbjct: 238 KDLINKMLTI-------NPAKRITASEALK 260
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 69/270 (25%), Positives = 107/270 (39%), Gaps = 45/270 (16%)
Query: 187 LVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAK--TQGHRQFTAEMETLGKVKHQNLVL 243
L + L G F V + +P G+ A K + K + H++ E +KH N+V
Sbjct: 8 LFEELGKGAFSVVRRCMKIPTGQEYAAKIINTKKLSARDHQKLEREARICRLLKHPNIVR 67
Query: 244 LLGYCSFDEEKLLVYEYMVNGSL--DLWLR----NATGSH---EVLDRAKRYKIA----- 289
L S + LV++ + G L D+ R A SH ++L+ +
Sbjct: 68 LHDSISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIVHR 127
Query: 290 ---------CSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
S ++G A DFGLA + + AGT GY+ PE +
Sbjct: 128 DLKPENLLLASKSKGAAVKLADFGLAIEVQG-DQQAWFGFAGTPGYLSPEVLRKDPYGKP 186
Query: 341 GDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGS 398
D+++ GVIL L+ P E Q + ++Q++K A D P + +
Sbjct: 187 VDMWACGVILYILLVGYPPFWDEDQHR--------LYQQIKA-GAYDFPSPEWDTVTPEA 237
Query: 399 KPMMLKMLRIAADCVADNPATRPTMLHVLK 428
K ++ KML I NPA R T LK
Sbjct: 238 KDLINKMLTI-------NPAKRITASEALK 260
>pdb|2JFM|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (Unliganded
Form)
Length = 325
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 26/195 (13%)
Query: 191 LEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVLLLGYCS 249
L DG FG VYKA + +A K K++ + E++ L H N+V LL
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 250 FDEEKLLVYEYMVNGSLD---LWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQD---- 302
++ ++ E+ G++D L L ++ K+ A + +H+D
Sbjct: 105 YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAG 164
Query: 303 ---FGLARLISACETHVST----------DIAGTLGYIPPEYGQSRMSTTR-----GDVY 344
F L I + VS GT ++ PE S R DV+
Sbjct: 165 NILFTLDGDIKLADFGVSAKNTRXIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVW 224
Query: 345 SFGVILLELVTAKEP 359
S G+ L+E+ + P
Sbjct: 225 SLGITLIEMAEIEPP 239
>pdb|3F61|A Chain A, Crystal Structure Of M. Tuberculosis Pknb
Leu33aspVAL222ASP DOUBLE MUTANT IN COMPLEX WITH ADP
Length = 311
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 42/212 (19%)
Query: 184 KLTLVDILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQG---HRQFTAEMETLGKVKHQ 239
+ L +IL GG V+ A L D + VAVK + + +F E + + H
Sbjct: 13 RYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHP 72
Query: 240 NLVLLLGYCSFDEE------KLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA 293
+V + Y + + E +V EY V+G + LR+ + + + ++ +
Sbjct: 73 AIVAV--YDTGEAETPAGPLPYIVMEY-VDG---VTLRDIVHTEGPMTPKRAIEVIADAC 126
Query: 294 RGLAFLHQ------------------------DFGLARLISACETHVSTDIA--GTLGYI 327
+ L F HQ DFG+AR I+ V+ A GT Y+
Sbjct: 127 QALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYL 186
Query: 328 PPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
PE + R DVYS G +L E++T + P
Sbjct: 187 SPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 74/196 (37%), Gaps = 33/196 (16%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKK---FSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCS 249
G F VY+A L DG VA+KK F + E++ L ++ H N++ Y S
Sbjct: 43 GQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKY--YAS 100
Query: 250 F--DEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------ 301
F D E +V E G L +++ ++ +K L +H
Sbjct: 101 FIEDNELNIVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHR 160
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
D GL R S+ +T + + GT Y+ PE + D+
Sbjct: 161 DIKPANVFITATGVVKLGDLGLGRFFSS-KTTAAHSLVGTPYYMSPERIHENGYNFKSDI 219
Query: 344 YSFGVILLELVTAKEP 359
+S G +L E+ + P
Sbjct: 220 WSLGCLLYEMAALQSP 235
>pdb|2JFL|A Chain A, Crystal Structure Of Human Ste20-Like Kinase (
Diphosphorylated Form) Bound To 5- Amino-3-((4-(
Aminosulfonyl)phenyl)amino)-N-(2,6-
Difluorophenyl)-1h-1,2, 4-Triazole-1-Carbothioamide
Length = 325
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 75/195 (38%), Gaps = 26/195 (13%)
Query: 191 LEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVLLLGYCS 249
L DG FG VYKA + +A K K++ + E++ L H N+V LL
Sbjct: 45 LGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFY 104
Query: 250 FDEEKLLVYEYMVNGSLD---LWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQD---- 302
++ ++ E+ G++D L L ++ K+ A + +H+D
Sbjct: 105 YENNLWILIEFCAGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAG 164
Query: 303 ---FGLARLISACETHVSTD----------IAGTLGYIPPEYGQSRMSTTR-----GDVY 344
F L I + VS GT ++ PE S R DV+
Sbjct: 165 NILFTLDGDIKLADFGVSAKNTRXIQRRDXFIGTPYWMAPEVVMCETSKDRPYDYKADVW 224
Query: 345 SFGVILLELVTAKEP 359
S G+ L+E+ + P
Sbjct: 225 SLGITLIEMAEIEPP 239
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 88/196 (44%), Gaps = 29/196 (14%)
Query: 188 VDILEDGGFGTVYKA-TLPDGKTV----AVKKFSQAKT-QGHRQFTAEMETLGKVKHQNL 241
+ +L G FGTVYK +P+G+ V A+ + +A + + +++ E + V + ++
Sbjct: 54 IKVLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVDNPHV 113
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLR---NATGSHEVLDRAKRYKIACSSARGLAF 298
LLG C +L+ + M G L ++R + GS +L+ + +
Sbjct: 114 CRLLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRL 172
Query: 299 LHQD------------------FGLARLISACETHVSTDIAGT-LGYIPPEYGQSRMSTT 339
+H+D FGLA+L+ A E + + ++ E R+ T
Sbjct: 173 VHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTH 232
Query: 340 RGDVYSFGVILLELVT 355
+ DV+S+GV + EL+T
Sbjct: 233 QSDVWSYGVTVWELMT 248
>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To
Appcp From D. Discoideum
pdb|4F0G|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum
pdb|4F1T|A Chain A, Crystal Structure Of The Roco4 Kinase Domain From D.
Discoideum Bound To The Rock Inhibitor H1152
Length = 287
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 109/281 (38%), Gaps = 64/281 (22%)
Query: 194 GGFGTVYKATL-PDGKTVAVKKFSQAKTQGH-------RQFTAEMETLGKVKHQNLVLLL 245
GGFG V+K L D VA+K ++G ++F E+ + + H N+V L
Sbjct: 30 GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ---- 301
G +V E++ G DL+ R +H + + + ++ A G+ ++
Sbjct: 90 GL--MHNPPRMVMEFVPCG--DLYHRLLDKAHPI-KWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 302 ---------------------------DFGLARLISACETHVSTDIAGTLGYIPPEY--G 332
DFGL S H + + G ++ PE
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFGL----SQQSVHSVSGLLGNFQWMAPETIGA 200
Query: 333 QSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT 392
+ T + D YSF +IL ++T + P F E + F M +++ L PT
Sbjct: 201 EEESYTEKADTYSFAMILYTILTGEGP----FDEYSYGKI---KFINMIREEG---LRPT 250
Query: 393 VLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
+ P + ++ + C + +P RP +++K L E+
Sbjct: 251 I-PEDCPPRLRNVIEL---CWSGDPKKRPHFSYIVKELSEL 287
>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN3|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4AN9|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs.
pdb|4ANB|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based
Allosteric Inhibitor Xl518 (Gdc-0973), Or Related
Analogs
Length = 301
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 79/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 20 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 79
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 80 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 135
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS + GT Y+ PE Q + + D++S G+
Sbjct: 136 PSNILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 195
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 196 LVEMAVGRYPRPP 208
>pdb|2F57|A Chain A, Crystal Structure Of The Human P21-activated Kinase 5
pdb|2F57|B Chain B, Crystal Structure Of The Human P21-activated Kinase 5
Length = 317
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 74/192 (38%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT GK VAVKK K Q E+ + H N+V +
Sbjct: 55 EGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHDNVVDMYSSYLVG 114
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ---------- 301
+E +V E++ G+L +H ++ + + S R L++LH
Sbjct: 115 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKS 169
Query: 302 --------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE T D++S G
Sbjct: 170 DSILLTSDGRIKLSDFGFCAQVSK-EVPKRKXLVGTPYWMAPEVISRLPYGTEVDIWSLG 228
Query: 348 VILLELVTAKEP 359
++++E++ + P
Sbjct: 229 IMVIEMIDGEPP 240
>pdb|1RJB|A Chain A, Crystal Structure Of Flt3
Length = 344
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 93/230 (40%), Gaps = 52/230 (22%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKATLPD-GKT-----VAVKKFSQAKTQGHRQ-FTAEM 230
++ P L +L G FG V AT KT VAVK + R+ +E+
Sbjct: 40 WEFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSEL 99
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNAT---GSHEV-LDRAKR 285
+ + ++ H+N+V LLG C+ L++EY G L +LR+ E+ + KR
Sbjct: 100 KMMTQLGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKR 159
Query: 286 YK---------------IACSSARGLAFL------HQDFGL-------ARLISACETHVS 317
+ A A+G+ FL H+D +++ C+ ++
Sbjct: 160 LEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLA 219
Query: 318 TDIAGTLGYI------------PPEYGQSRMSTTRGDVYSFGVILLELVT 355
DI Y+ PE + T + DV+S+G++L E+ +
Sbjct: 220 RDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFS 269
>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|B Chain B, Crystal Structure Of The Human Cdkl1 Kinase Domain
pdb|4AGU|C Chain C, Crystal Structure Of The Human Cdkl1 Kinase Domain
Length = 311
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 82/192 (42%), Gaps = 35/192 (18%)
Query: 193 DGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYCS 249
+G +G V+K D G+ VA+KKF +++ + A E+ L ++KH NLV LL
Sbjct: 13 EGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFR 72
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------- 301
LV+EY + L R G E L ++ I + + + F H+
Sbjct: 73 RKRRLHLVFEYCDHTVLHELDRYQRGVPEHLVKS----ITWQTLQAVNFCHKHNCIHRDV 128
Query: 302 ----------------DFGLARLISACETHVSTDIAGTLGYIPPE--YGQSRMSTTRGDV 343
DFG ARL++ + ++A T Y PE G ++ DV
Sbjct: 129 KPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVA-TRWYRSPELLVGDTQYGPP-VDV 186
Query: 344 YSFGVILLELVT 355
++ G + EL++
Sbjct: 187 WAIGCVFAELLS 198
>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp
pdb|3PP1|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgatp
Length = 328
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 76
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 77 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 132
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 192
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 193 LVEMAVGRYPIPP 205
>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound
Length = 322
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 76
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 77 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 132
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 192
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 193 LVEMAVGRYPIPP 205
>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3EQB|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
Length = 333
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 76
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 77 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 132
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 192
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 193 LVEMAVGRYPIPP 205
>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3DY7|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Complex With Ligand And
Mgatp
pdb|3E8N|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) Complexed With A Potent Inhibitor
Rdea119 And Mgatp
pdb|3V01|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions.
pdb|3V04|A Chain A, Discovery Of Novel Allosteric Mek Inhibitors Possessing
Classical And Non-Classical Bidentate Ser212
Interactions
Length = 341
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 17 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 76
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 77 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 132
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 133 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 192
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 193 LVEMAVGRYPIPP 205
>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer
Length = 395
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 79 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 138
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 139 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 194
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 195 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 254
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 255 LVEMAVGRYPIPP 267
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 110/277 (39%), Gaps = 56/277 (20%)
Query: 194 GGFGTVYKATL-PDGKTVAVKKFSQAKTQGH-------RQFTAEMETLGKVKHQNLVLLL 245
GGFG V+K L D VA+K ++G ++F E+ + + H N+V L
Sbjct: 30 GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL------ 299
G +V E++ G DL+ R +H + + + ++ A G+ ++
Sbjct: 90 GL--MHNPPRMVMEFVPCG--DLYHRLLDKAHPI-KWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 300 --HQDFGLARL-------------------ISACETHVSTDIAGTLGYIPPEY--GQSRM 336
H+D + +S H + + G ++ PE +
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFSLSQQSVHSVSGLLGNFQWMAPETIGAEEES 204
Query: 337 STTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNA 396
T + D YSF +IL ++T + P F E + F M +++ L PT+
Sbjct: 205 YTEKADTYSFAMILYTILTGEGP----FDEYSYGKI---KFINMIREEG---LRPTI-PE 253
Query: 397 GSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
P + ++ + C + +P RP +++K L E+
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYIVKELSEL 287
>pdb|3LCO|A Chain A, Inhibitor Bound To A Dfg-Out Structure Of The Kinase
Domain Of Csf-1r
Length = 324
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 78/310 (25%), Positives = 115/310 (37%), Gaps = 73/310 (23%)
Query: 178 FQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF------SQAKTQGHRQFTAEM 230
++ P L L G FG V +AT GK AV K S A +E+
Sbjct: 26 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSEL 85
Query: 231 ETLGKV-KHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSH-----------E 278
+ + + +H+N+V LLG C+ L++ EY G L +LR + E
Sbjct: 86 KIMSHLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKAEAMLGPSLAPGQDPE 145
Query: 279 VLDRAK------RYKIACSS--ARGLAFL------HQ------------------DFGLA 306
LD+ R + SS A+G+AFL H+ DFGLA
Sbjct: 146 GLDKEDGRPLELRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLA 205
Query: 307 RLISACETHVSTDIAG-TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQ 365
R I ++ A + ++ PE + T + DV+S+G++L E+ + P
Sbjct: 206 RDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGI- 264
Query: 366 EKEGANLVGWVFQKMKK---QQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRPT 422
LV F K+ K Q A P + I C A P RPT
Sbjct: 265 ------LVNSKFYKLVKDGYQMAQPAFAPK-----------NIYSIMQACWALEPTHRPT 307
Query: 423 MLHVLKLLHE 432
+ L E
Sbjct: 308 FQQICSFLQE 317
>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With
Compound 1, Atp-Gs And Mg2p
pdb|3EQD|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Atp-Gs
And Mg2p
pdb|3EQF|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With K252a
And Mg2p
pdb|3EQG|A Chain A, X-ray Structure Of The Human Mitogen-activated Protein
Kinase Kinase 1 (mek1) In A Ternary Complex With Pd, Adp
And Mg2p
pdb|3EQH|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Ternary Complex With U0126,
Adp And Mg2p
pdb|3EQI|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein
Kinase Kinase 1 (Mek1) In A Binary Complex With Adp And
Mg2p
Length = 360
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 78/193 (40%), Gaps = 28/193 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 44 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 103
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 104 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 159
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 160 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 219
Query: 350 LLELVTAKEPTGP 362
L+E+ + P P
Sbjct: 220 LVEMAVGRYPIPP 232
>pdb|2BFX|A Chain A, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2BFX|B Chain B, Mechanism Of Aurora-B Activation By Incenp And Inhibition
By Hesperidin.
pdb|2VGP|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGP|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With A
Aminothiazole Inhibitor
pdb|2VGO|A Chain A, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|2VGO|B Chain B, Crystal Structure Of Aurora B Kinase In Complex With
Reversine Inhibitor
pdb|3ZTX|A Chain A, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen.
pdb|3ZTX|B Chain B, Aurora Kinase Selective Inhibitors Identified Using A
Taxol- Induced Checkpoint Sensitivity Screen
Length = 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 51/265 (19%)
Query: 176 SMFQQPLLKLTLVDI-----LEDGGFGTVYKATLPDGKTVAVKKF---SQAKTQG-HRQF 226
++ + P K T+ D L G FG VY A K + K SQ + +G Q
Sbjct: 2 ALAEMPKRKFTIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQL 61
Query: 227 TAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL---------RNATGSH 277
E+E ++H N++ + Y + L+ E+ G L L R+AT
Sbjct: 62 RREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFME 121
Query: 278 EVLDRAKRYKIACSSARGLAFLHQDFGLARLISACE-----------THVST----DIAG 322
E+ D A +H+D L+ + H + + G
Sbjct: 122 ELAD-------ALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRXMCG 174
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
TL Y+PPE + + + D++ GV+ E + P + +V
Sbjct: 175 TLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV------- 227
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLR 407
D+ P L+ GSK ++ K+LR
Sbjct: 228 ----DLKFPPFLSDGSKDLISKLLR 248
>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
pdb|3SLS|B Chain B, Crystal Structure Of Human Mek-1 Kinase In Complex With
Ucb1353770 And Amppnp
Length = 304
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 78/192 (40%), Gaps = 28/192 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFS-QAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G G V+K + P G +A K + K Q E++ L + +V G D
Sbjct: 36 GNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD 95
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL-------HQDFG 304
E + E+M GSLD L+ A E + K++ + +GL +L H+D
Sbjct: 96 GEISICMEHMDGGSLDQVLKKAGRIPEQI----LGKVSIAVIKGLTYLREKHKIMHRDVK 151
Query: 305 LARL-------ISACETHVS--------TDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVI 349
+ + I C+ VS GT Y+ PE Q + + D++S G+
Sbjct: 152 PSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLS 211
Query: 350 LLELVTAKEPTG 361
L+E+ + P G
Sbjct: 212 LVEMAVGRYPIG 223
>pdb|2BFY|A Chain A, Complex Of Aurora-B With Incenp And Hesperidin.
pdb|2BFY|B Chain B, Complex Of Aurora-B With Incenp And Hesperidin
Length = 284
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 98/265 (36%), Gaps = 51/265 (19%)
Query: 176 SMFQQPLLKLTLVDI-----LEDGGFGTVYKATLPDGKTVAVKKF---SQAKTQG-HRQF 226
++ + P K T+ D L G FG VY A K + K SQ + +G Q
Sbjct: 2 ALAEMPKRKFTIDDFDIVRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQL 61
Query: 227 TAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWL---------RNATGSH 277
E+E ++H N++ + Y + L+ E+ G L L R+AT
Sbjct: 62 RREIEIQSHLRHPNILRMYNYFHDRKRIYLMLEFAPRGELYKELQKHGRFDEQRSATFME 121
Query: 278 EVLDRAKRYKIACSSARGLAFLHQDFGLARLISACE-----------THVST----DIAG 322
E+ D A +H+D L+ + H + + G
Sbjct: 122 ELAD-------ALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRXMCG 174
Query: 323 TLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
TL Y+PPE + + + D++ GV+ E + P + +V
Sbjct: 175 TLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNV------- 227
Query: 383 QQADDVLDPTVLNAGSKPMMLKMLR 407
D+ P L+ GSK ++ K+LR
Sbjct: 228 ----DLKFPPFLSDGSKDLISKLLR 248
>pdb|3NYX|A Chain A, Non-Phosphorylated Tyk2 Jh1 Domain With
Quinoline-Thiadiazole- Thiophene Inhibitor
Length = 302
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 41/259 (15%)
Query: 207 GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVN 263
G+ VAVK HR + E++ L + H++++ G C EK LV EY+
Sbjct: 43 GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPL 102
Query: 264 GSLDLWL-RNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------- 301
GSL +L R++ G ++L A++ G+A+LH
Sbjct: 103 GSLRDYLPRHSIGLAQLLLFAQQI------CEGMAYLHSQHYIHRNLAARNVLLDNDRLV 156
Query: 302 ---DFGLARLISACETH--VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTA 356
DFGLA+ + + V D + + PE + DV+SFGV L EL+T
Sbjct: 157 KIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTH 216
Query: 357 KEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADN 416
+ + + + L+G +M + ++L+ ++ + +C
Sbjct: 217 CDSS--QSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETE 274
Query: 417 PATRPT---MLHVLKLLHE 432
+ RPT ++ +LK +HE
Sbjct: 275 ASFRPTFENLIPILKTVHE 293
>pdb|1VZO|A Chain A, The Structure Of The N-Terminal Kinase Domain Of Msk1
Reveals A Novel Autoinhibitory Conformation For A Dual
Kinase Protein
Length = 355
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 84/206 (40%), Gaps = 35/206 (16%)
Query: 187 LVDILEDGGFGTVY---KATLPD-GKTVAVKKF------SQAKTQGHRQFTAEMETLGKV 236
L+ +L G +G V+ K + D GK A+K +AKT H + E + L +
Sbjct: 58 LLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTR--TERQVLEHI 115
Query: 237 KHQNLVLLLGYCSFDEEKL-LVYEYMVNGSL--DLWLRNATGSHEVLDRAKRYKIACSSA 293
+ ++ L Y E KL L+ +Y+ G L L R HEV +A
Sbjct: 116 RQSPFLVTLHYAFQTETKLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHL 175
Query: 294 RGLAFLHQD------------------FGLARLISACETHVSTDIAGTLGYIPPEY--GQ 333
L +++D FGL++ A ET + D GT+ Y+ P+ G
Sbjct: 176 HKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGG 235
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEP 359
D +S GV++ EL+T P
Sbjct: 236 DSGHDKAVDWWSLGVLMYELLTGASP 261
>pdb|3NZ0|A Chain A, Non-Phosphorylated Tyk2 Kinase With Cmp6
Length = 302
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/259 (23%), Positives = 107/259 (41%), Gaps = 41/259 (15%)
Query: 207 GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVN 263
G+ VAVK HR + E++ L + H++++ G C EK LV EY+
Sbjct: 43 GEMVAVKALKADCGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDQGEKSLQLVMEYVPL 102
Query: 264 GSLDLWL-RNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------- 301
GSL +L R++ G ++L A++ G+A+LH
Sbjct: 103 GSLRDYLPRHSIGLAQLLLFAQQI------CEGMAYLHAQHYIHRNLAARNVLLDNDRLV 156
Query: 302 ---DFGLARLISACETH--VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTA 356
DFGLA+ + + V D + + PE + DV+SFGV L EL+T
Sbjct: 157 KIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTH 216
Query: 357 KEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADN 416
+ + + + L+G +M + ++L+ ++ + +C
Sbjct: 217 CDSS--QSPPTKFLELIGIAQGQMTVLRLTELLERGERLPRPDKCPCEVYHLMKNCWETE 274
Query: 417 PATRPT---MLHVLKLLHE 432
+ RPT ++ +LK +HE
Sbjct: 275 ASFRPTFENLIPILKTVHE 293
>pdb|2UV2|A Chain A, Crystal Structure Of Human Ste20-Like Kinase Bound To
4-(4-(
5-Cyclopropyl-1h-Pyrazol-3-Ylamino)-Quinazolin-2-
Ylamino)- Phenyl)-Acetonitrile
Length = 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/203 (21%), Positives = 74/203 (36%), Gaps = 43/203 (21%)
Query: 192 EDGGFGTVYKATLPDGKTVAVKKFSQAKTQGH-RQFTAEMETLGKVKHQNLVLLLGYCSF 250
E G FG VYKA + +A K K++ + E++ L H N+V LL +
Sbjct: 19 ELGDFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYY 78
Query: 251 DEEKLLVYEYMVNGSLDLWL----RNATGSHEVLDRAKRYKIACSSA-RGLAFLHQ---- 301
+ ++ E+ G++D + R T S + ++ C L +LH
Sbjct: 79 ENNLWILIEFCAGGAVDAVMLELERPLTES--------QIQVVCKQTLDALNYLHDNKII 130
Query: 302 --------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR- 340
DFG++ + GT ++ PE S R
Sbjct: 131 HRDLKAGNILFTLDGDIKLADFGVSAKNTRTXIQRRDSFIGTPYWMAPEVVMCETSKDRP 190
Query: 341 ----GDVYSFGVILLELVTAKEP 359
DV+S G+ L+E+ + P
Sbjct: 191 YDYKADVWSLGITLIEMAEIEPP 213
>pdb|1YVJ|A Chain A, Crystal Structure Of The Jak3 Kinase Domain In Complex
With A Staurosporine Analogue
Length = 290
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/205 (23%), Positives = 78/205 (38%), Gaps = 38/205 (18%)
Query: 185 LTLVDILEDGGFGTVYKATLPD-----GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V G VAVK+ + R F E++ L K H
Sbjct: 9 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL-KALHS 67
Query: 240 NLVLL---LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
+ ++ + Y E LV EY+ +G L +L+ LD ++ + +G+
Sbjct: 68 DFIVKYRGVSYGPGRPELRLVMEYLPSGCLRDFLQRHRAR---LDASRLLLYSSQICKGM 124
Query: 297 AFL------HQDFGLARLISACETHVSTDIAGTLGYIP--------------------PE 330
+L H+D ++ E HV G +P PE
Sbjct: 125 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDXXVVREPGQSPIFWYAPE 184
Query: 331 YGQSRMSTTRGDVYSFGVILLELVT 355
+ + + DV+SFGV+L EL T
Sbjct: 185 SLSDNIFSRQSDVWSFGVVLYELFT 209
>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain
From D. Discoideum Bound To Appcp
Length = 287
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 109/277 (39%), Gaps = 56/277 (20%)
Query: 194 GGFGTVYKATL-PDGKTVAVKKFSQAKTQGH-------RQFTAEMETLGKVKHQNLVLLL 245
GGFG V+K L D VA+K ++G ++F E+ + + H N+V L
Sbjct: 30 GGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLY 89
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL------ 299
G +V E++ G DL+ R +H + + + ++ A G+ ++
Sbjct: 90 GL--MHNPPRMVMEFVPCG--DLYHRLLDKAHPI-KWSVKLRLMLDIALGIEYMQNQNPP 144
Query: 300 --HQDFGLARLI-------------------SACETHVSTDIAGTLGYIPPEY--GQSRM 336
H+D + S H + + G ++ PE +
Sbjct: 145 IVHRDLRSPNIFLQSLDENAPVCAKVADFGTSQQSVHSVSGLLGNFQWMAPETIGAEEES 204
Query: 337 STTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNA 396
T + D YSF +IL ++T + P F E + F M +++ L PT+
Sbjct: 205 YTEKADTYSFAMILYTILTGEGP----FDEYSYGKI---KFINMIREEG---LRPTI-PE 253
Query: 397 GSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
P + ++ + C + +P RP +++K L E+
Sbjct: 254 DCPPRLRNVIEL---CWSGDPKKRPHFSYIVKELSEL 287
>pdb|1MRU|A Chain A, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb.
pdb|1MRU|B Chain B, Intracellular SerTHR PROTEIN KINASE DOMAIN OF
Mycobacterium Tuberculosis Pknb
Length = 311
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 302 DFGLARLISACETHVSTDIA--GTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
DFG+AR I+ V+ A GT Y+ PE + R DVYS G +L E++T + P
Sbjct: 159 DFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 360 TGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPAT 419
G + V +Q +++ DP +A + + + + +A NP
Sbjct: 219 F-------TGDSPVSVAYQHVRE-------DPIPPSARHEGLSADLDAVVLKALAKNPEN 264
Query: 420 R 420
R
Sbjct: 265 R 265
>pdb|3ORM|A Chain A, Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
Length = 311
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 302 DFGLARLISACETHVSTDIA--GTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
DFG+AR I+ V+ A GT Y+ PE + R DVYS G +L E++T + P
Sbjct: 159 DFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 218
Query: 360 TGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPAT 419
G + V +Q +++ DP +A + + + + +A NP
Sbjct: 219 F-------TGDSPVSVAYQHVRE-------DPIPPSARHEGLSADLDAVVLKALAKNPEN 264
Query: 420 R 420
R
Sbjct: 265 R 265
>pdb|1O6Y|A Chain A, Catalytic Domain Of Pknb Kinase From Mycobacterium
Tuberculosis
pdb|2FUM|A Chain A, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|B Chain B, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|C Chain C, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
pdb|2FUM|D Chain D, Catalytic Domain Of Protein Kinase Pknb From Mycobacterium
Tuberculosis In Complex With Mitoxantrone
Length = 299
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 53/121 (43%), Gaps = 16/121 (13%)
Query: 302 DFGLARLISACETHVSTDIA--GTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
DFG+AR I+ V+ A GT Y+ PE + R DVYS G +L E++T + P
Sbjct: 176 DFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPP 235
Query: 360 TGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPAT 419
G + V +Q +++ DP +A + + + + +A NP
Sbjct: 236 F-------TGDSPVSVAYQHVRE-------DPIPPSARHEGLSADLDAVVLKALAKNPEN 281
Query: 420 R 420
R
Sbjct: 282 R 282
>pdb|3UIU|A Chain A, Crystal Structure Of Apo-Pkr Kinase Domain
pdb|3UIU|B Chain B, Crystal Structure Of Apo-Pkr Kinase Domain
Length = 306
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 62/221 (28%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLG 246
++++ GGFG V+KA DGKT +++ + R E++ L K+ H N+V G
Sbjct: 17 IELIGSGGFGQVFKAKHRIDGKTYVIRRVKYNNEKAER----EVKALAKLDHVNIVHYNG 72
Query: 247 -----------------YCSFDEEK------------LLVYEYMVNGSLDLWLRNATGSH 277
+D E + E+ G+L+ W+ G
Sbjct: 73 CWDGFDYDPETSDDSLESSDYDPENSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG-- 130
Query: 278 EVLDRAKRYKIACSSARGLAFLHQ------------------------DFGLARLISACE 313
E LD+ ++ +G+ ++H DFGL + S
Sbjct: 131 EKLDKVLALELFEQITKGVDYIHSKKLIHRDLKPSNIFLVDTKQVKIGDFGL--VTSLKN 188
Query: 314 THVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELV 354
T GTL Y+ PE S+ D+Y+ G+IL EL+
Sbjct: 189 DGKRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELL 229
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 93/228 (40%), Gaps = 53/228 (23%)
Query: 181 PLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQN 240
P L L++I G FG V+KA L + VAVK F Q Q E+ + +KH+N
Sbjct: 13 PRGSLQLLEIKARGRFGCVWKAQLMN-DFVAVKIFPLQDKQSW-QSEREIFSTPGMKHEN 70
Query: 241 LVLLLGY----CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
L+ + + + E L+ + GSL +L+ ++ + +A + +RGL
Sbjct: 71 LLQFIAAEKRGSNLEVELWLITAFHDKGSLTDYLKG-----NIITWNELCHVAETMSRGL 125
Query: 297 AFLHQDFGLAR------------------LISACETHVSTDI------------------ 320
++LH+D R L+ + T V D
Sbjct: 126 SYLHEDVPWCRGEGHKPSIAHRDFKSKNVLLKSDLTAVLADFGLAVRFEPGKPPGDTHGQ 185
Query: 321 AGTLGYIPPEYGQ-----SRMSTTRGDVYSFGVILLELVT-AKEPTGP 362
GT Y+ PE + R + R D+Y+ G++L ELV+ K GP
Sbjct: 186 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGP 233
>pdb|2GCD|A Chain A, Tao2 Kinase Domain-Staurosporine Structure
pdb|2GCD|B Chain B, Tao2 Kinase Domain-Staurosporine Structure
Length = 309
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 46/200 (23%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQF---TAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A + + + VA+KK S + Q + ++ E+ L K++H N + G
Sbjct: 26 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL 85
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------- 301
+ LV EY + + DL + EV A + + +GLA+LH
Sbjct: 86 REHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA----VTHGALQGLAYLHSHNMIHRDV 141
Query: 302 ----------------DFGLARLISACETHVSTDIAGTLGYIPPEY------GQSRMSTT 339
DFG A +++ V GT ++ PE GQ
Sbjct: 142 KAGNILLSEPGLVKLGDFGSASIMAPANXFV-----GTPYWMAPEVILAMDEGQ---YDG 193
Query: 340 RGDVYSFGVILLELVTAKEP 359
+ DV+S G+ +EL K P
Sbjct: 194 KVDVWSLGITCIELAERKPP 213
>pdb|3PLS|A Chain A, Ron In Complex With Ligand Amp-Pnp
Length = 298
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 110/281 (39%), Gaps = 58/281 (20%)
Query: 190 ILEDGGFGTVYKATLPDGKT----VAVKKFSQ-AKTQGHRQFTAEMETLGKVKHQNLVLL 244
++ G FG VY D A+K S+ + Q F E + + H N++ L
Sbjct: 28 VIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLAL 87
Query: 245 LGYCSFDEEKL--LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ- 301
+G E L ++ YM +G L ++R+ + V D ARG+ +L +
Sbjct: 88 IG-IMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKDLIS---FGLQVARGMEYLAEQ 143
Query: 302 -----------------------DFGLARLI-----SACETHVSTDIAGTLGYIPPEYGQ 333
DFGLAR I + + H + + + E Q
Sbjct: 144 KFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLP--VKWTALESLQ 201
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTV 393
+ TT+ DV+SFGV+L EL+T P ++ + +L ++ Q + Q + D
Sbjct: 202 TYRFTTKSDVWSFGVLLWELLTRG---APPYRHIDPFDLTHFLAQGRRLPQPEYCPD--- 255
Query: 394 LNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEIV 434
+ ++ C +PA RPT ++ + +IV
Sbjct: 256 ----------SLYQVMQQCWEADPAVRPTFRVLVGEVEQIV 286
>pdb|1U5Q|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5Q|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|A Chain A, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
pdb|1U5R|B Chain B, Crystal Structure Of The Tao2 Kinase Domain: Activation
And Specifity Of A Ste20p Map3k
Length = 348
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/200 (25%), Positives = 80/200 (40%), Gaps = 46/200 (23%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQF---TAEMETLGKVKHQNLVLLLGYCS 249
G FG VY A + + + VA+KK S + Q + ++ E+ L K++H N + G
Sbjct: 65 GSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYL 124
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------- 301
+ LV EY + + DL + EV A + + +GLA+LH
Sbjct: 125 REHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAA----VTHGALQGLAYLHSHNMIHRDV 180
Query: 302 ----------------DFGLARLISACETHVSTDIAGTLGYIPPEY------GQSRMSTT 339
DFG A +++ V GT ++ PE GQ
Sbjct: 181 KAGNILLSEPGLVKLGDFGSASIMAPANXFV-----GTPYWMAPEVILAMDEGQ---YDG 232
Query: 340 RGDVYSFGVILLELVTAKEP 359
+ DV+S G+ +EL K P
Sbjct: 233 KVDVWSLGITCIELAERKPP 252
>pdb|4E4L|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|E Chain E, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4L|D Chain D, Jak1 Kinase (Jh1 Domain) In Complex With Compound 30
pdb|4E4N|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E4N|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 49
pdb|4E5W|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4E5W|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 26
pdb|4EHZ|A Chain A, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|B Chain B, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|C Chain C, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EHZ|D Chain D, The Jak1 Kinase Domain In Complex With Inhibitor
pdb|4EI4|A Chain A, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4EI4|B Chain B, Jak1 Kinase (jh1 Domain) In Complex With Compound 20
pdb|4FK6|A Chain A, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
pdb|4FK6|B Chain B, Jak1 Kinase (Jh1 Domain) In Complex With Compound 72
Length = 302
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 57/225 (25%), Positives = 89/225 (39%), Gaps = 39/225 (17%)
Query: 165 SRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATL-PDG----KTVAVKKFSQAK 219
S K ++ + F++ LK + L +G FG V P+G + VAVK
Sbjct: 5 SEKKPATEVDPTHFEKRFLKR--IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPES 62
Query: 220 TQGH-RQFTAEMETLGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVNGSLDLWLRNATGS 276
H E+E L + H+N+V G C+ D L+ E++ +GSL +L
Sbjct: 63 GGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNK 122
Query: 277 HEVLDRAKRYKIACSSARGLAFL--------------------HQ----DFGLARLISAC 312
++ ++ K A +G+ +L HQ DFGL + I
Sbjct: 123 ---INLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETD 179
Query: 313 ETH--VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
+ V D + + PE DV+SFGV L EL+T
Sbjct: 180 KEXXTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 224
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 35/199 (17%)
Query: 193 DGGFGTVYKATLPDG-KTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYCS 249
+G +GTV+KA + + VA+K+ +A E+ L ++KH+N+V L
Sbjct: 12 EGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH 71
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-------- 301
D++ LV+E+ + L + + G LD +GL F H
Sbjct: 72 SDKKLTLVFEF-CDQDLKKYFDSCNGD---LDPEIVKSFLFQLLKGLGFCHSRNVLHRDL 127
Query: 302 ----------------DFGLARLISACETHVSTDIAGTLGYIPPE--YGQSRMSTTRGDV 343
DFGLAR S ++ TL Y PP+ +G +++ +T D+
Sbjct: 128 KPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVV-TLWYRPPDVLFG-AKLYSTSIDM 185
Query: 344 YSFGVILLELVTAKEPTGP 362
+S G I EL A P P
Sbjct: 186 WSAGCIFAELANAARPLFP 204
>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated
Protein Kinase And Immunoglobulin Domains
Length = 491
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 37/210 (17%)
Query: 185 LTLVDILED---GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQN 240
L DI E+ G FG V++ T G A K E++T+ ++H
Sbjct: 50 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 109
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH 300
LV L D E +++YE+M G L H + + + +GL +H
Sbjct: 110 LVNLHDAFEDDNEMVMIYEFMSGGEL---FEKVADEHNKMSEDEAVEYMRQVCKGLCHMH 166
Query: 301 Q--------------------------DFGL-ARLISACETHVSTDIAGTLGYIPPEYGQ 333
+ DFGL A L V+T GT + PE +
Sbjct: 167 ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTT---GTAEFAAPEVAE 223
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPTGPE 363
+ D++S GV+ L++ P G E
Sbjct: 224 GKPVGYYTDMWSVGVLSYILLSGLSPFGGE 253
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 37/210 (17%)
Query: 185 LTLVDILED---GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQN 240
L DI E+ G FG V++ T G A K E++T+ ++H
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH 300
LV L D E +++YE+M G L H + + + +GL +H
Sbjct: 216 LVNLHDAFEDDNEMVMIYEFMSGGEL---FEKVADEHNKMSEDEAVEYMRQVCKGLCHMH 272
Query: 301 Q--------------------------DFGL-ARLISACETHVSTDIAGTLGYIPPEYGQ 333
+ DFGL A L V+T GT + PE +
Sbjct: 273 ENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTT---GTAEFAAPEVAE 329
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPTGPE 363
+ D++S GV+ L++ P G E
Sbjct: 330 GKPVGYYTDMWSVGVLSYILLSGLSPFGGE 359
>pdb|2BVA|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
pdb|2BVA|B Chain B, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 292
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT+ GK VAVKK K Q E+ + +H+N+V +
Sbjct: 30 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG 89
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH----------- 300
+E +V E++ G+L +H ++ + + + + L+ LH
Sbjct: 90 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKS 144
Query: 301 -------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE D++S G
Sbjct: 145 DSILLTHDGRVKLSDFGFCAQVSK-EVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 203
Query: 348 VILLELVTAKEP 359
++++E+V + P
Sbjct: 204 IMVIEMVDGEPP 215
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 97/247 (39%), Gaps = 45/247 (18%)
Query: 207 GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSL 266
K + KK S + H++ E +KH N+V L S + LV++ + G L
Sbjct: 61 AKIINTKKLS---ARDHQKLEREARICRLLKHPNIVRLHDSISEEGFHYLVFDLVTGGEL 117
Query: 267 --DLWLR----NATGSH------EVLDRAKRYKIA-----------CSSARGLAFLHQDF 303
D+ R A SH E ++ ++ I S +G A DF
Sbjct: 118 FEDIVAREYYSEADASHCIHQILESVNHIHQHDIVHRDLKPENLLLASKCKGAAVKLADF 177
Query: 304 GLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPE 363
GLA + E AGT GY+ PE + D+++ GVIL L+ P E
Sbjct: 178 GLAIEVQG-EQQAWFGFAGTPGYLSPEVLRKDPYGKPVDIWACGVILYILLVGYPPFWDE 236
Query: 364 FQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGSKPMMLKMLRIAADCVADNPATRP 421
Q K ++Q++K A D P + +K ++ +ML I NPA R
Sbjct: 237 DQHK--------LYQQIKA-GAYDFPSPEWDTVTPEAKNLINQMLTI-------NPAKRI 280
Query: 422 TMLHVLK 428
T LK
Sbjct: 281 TADQALK 287
>pdb|2CDZ|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Cgp74514a
pdb|2J0I|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4
Length = 303
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT+ GK VAVKK K Q E+ + +H+N+V +
Sbjct: 41 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG 100
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH----------- 300
+E +V E++ G+L +H ++ + + + + L+ LH
Sbjct: 101 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKS 155
Query: 301 -------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE D++S G
Sbjct: 156 DSILLTHDGRVKLSDFGFCAQVSK-EVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 214
Query: 348 VILLELVTAKEP 359
++++E+V + P
Sbjct: 215 IMVIEMVDGEPP 226
>pdb|2X4Z|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With Pf-03758309
pdb|4APP|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 4 In
Complex With (S)-N-(5-(3-Benzyl-1-Methylpiperazine-4-
Carbonyl)-6,6-Dimethyl-1,4,5,6-Tetrahydropyrrolo(3,4-C)
Pyrazol-3-Yl)-3-Phenoxybenzamide
Length = 296
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT+ GK VAVKK K Q E+ + +H+N+V +
Sbjct: 34 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG 93
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH----------- 300
+E +V E++ G+L +H ++ + + + + L+ LH
Sbjct: 94 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKS 148
Query: 301 -------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE D++S G
Sbjct: 149 DSILLTHDGRVKLSDFGFCAQVSK-EVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 207
Query: 348 VILLELVTAKEP 359
++++E+V + P
Sbjct: 208 IMVIEMVDGEPP 219
>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7
pdb|1UA2|B Chain B, Crystal Structure Of Human Cdk7
pdb|1UA2|C Chain C, Crystal Structure Of Human Cdk7
pdb|1UA2|D Chain D, Crystal Structure Of Human Cdk7
Length = 346
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/203 (27%), Positives = 89/203 (43%), Gaps = 46/203 (22%)
Query: 188 VDILEDGGFGTVYKATLPD-GKTVAVKKF-----SQAKTQGHRQFTAEMETLGKVKHQNL 241
+D L +G F TVYKA + + VA+KK S+AK +R E++ L ++ H N+
Sbjct: 15 LDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNI 74
Query: 242 VLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN----ATGSHEVLDRAKRYKIACSSARGLA 297
+ LL LV+++M L++ +++ T SH K Y + + +GL
Sbjct: 75 IGLLDAFGHKSNISLVFDFM-ETDLEVIIKDNSLVLTPSH-----IKAYMLM--TLQGLE 126
Query: 298 FLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPE--Y 331
+LHQ DFGLA+ + + T Y PE +
Sbjct: 127 YLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYXHQVV-TRWYRAPELLF 185
Query: 332 GQSRMSTTRGDVYSFGVILLELV 354
G +RM D+++ G IL EL+
Sbjct: 186 G-ARMYGVGVDMWAVGCILAELL 207
>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5
pdb|1OB3|B Chain B, Structure Of P. Falciparum Pfpk5
pdb|1V0P|A Chain A, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
pdb|1V0P|B Chain B, Structure Of P. Falciparum Pfpk5-Purvalanol B Ligand
Complex
Length = 288
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 83/190 (43%), Gaps = 34/190 (17%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFS-QAKTQGHRQFTA-EMETLGKVKHQNLVLLLGYCSF 250
+G +G VYKA G+T A+KK + + +G T E+ L ++KH N+V L
Sbjct: 12 EGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT 71
Query: 251 DEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------- 301
+ +LV+E++ + L L G E + AK + + + G+A+ H
Sbjct: 72 KKRLVLVFEHL-DQDLKKLLDVCEGGLESVT-AKSFLLQLLN--GIAYCHDRRVLHRDLK 127
Query: 302 ---------------DFGLARLISACETHVSTDIAGTLGYIPPEY--GQSRMSTTRGDVY 344
DFGLAR + +I TL Y P+ G + STT D++
Sbjct: 128 PQNLLINREGELKIADFGLARAFGIPVRKYTHEIV-TLWYRAPDVLMGSKKYSTTI-DIW 185
Query: 345 SFGVILLELV 354
S G I E+V
Sbjct: 186 SVGCIFAEMV 195
>pdb|2Q0N|A Chain A, Structure Of Human P21 Activating Kinase 4 (Pak4) In
Complex With A Consensus Peptide
Length = 301
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT+ GK VAVKK K Q E+ + +H+N+V +
Sbjct: 39 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG 98
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH----------- 300
+E +V E++ G+L +H ++ + + + + L+ LH
Sbjct: 99 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKS 153
Query: 301 -------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE D++S G
Sbjct: 154 DSILLTHDGRVKLSDFGFCAQVSK-EVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 212
Query: 348 VILLELVTAKEP 359
++++E+V + P
Sbjct: 213 IMVIEMVDGEPP 224
>pdb|3ORX|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|E Chain E, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|F Chain F, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|G Chain G, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORX|H Chain H, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Inhibitor 1f8
pdb|3ORZ|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|B Chain B, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|C Chain C, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3ORZ|D Chain D, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator 2a2
pdb|3OTU|A Chain A, Pdk1 Mutant Bound To Allosteric Disulfide Fragment
Activator Js30
Length = 316
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 39/225 (17%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 44 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLY 103
Query: 246 GYCSFDEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQD 302
+C D+EKL Y NG L ++R E R +I A G +H+D
Sbjct: 104 -FCFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRD 162
Query: 303 ------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGDV 343
FG A+++S + GT Y+ PE + + D+
Sbjct: 163 LKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSDL 222
Query: 344 YSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 223 WALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 257
>pdb|3COM|A Chain A, Crystal Structure Of Mst1 Kinase
pdb|3COM|B Chain B, Crystal Structure Of Mst1 Kinase
Length = 314
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 176 SMFQQPLLKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLG 234
S+ +QP +++ L +G +G+VYKA + G+ VA+K+ ++ E+ +
Sbjct: 22 SLTKQPEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQ 79
Query: 235 KVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLD--LWLRNATGSHEVLDRAKRYKIACSS 292
+ ++V G + + +V EY GS+ + LRN T + + + I S+
Sbjct: 80 QCDSPHVVKYYGSYFKNTDLWIVMEYCGAGSVSDIIRLRNKTLTEDEI-----ATILQST 134
Query: 293 ARGLAFLH------QDFGLARLISACETHVS----------TD-------IAGTLGYIPP 329
+GL +LH +D ++ E H TD + GT ++ P
Sbjct: 135 LKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDXMAKRNXVIGTPFWMAP 194
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
E Q D++S G+ +E+ K P
Sbjct: 195 EVIQEIGYNCVADIWSLGITAIEMAEGKPP 224
>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|1VYW|C Chain C, Structure Of Cdk2CYCLIN A WITH PNU-292137
pdb|2C4G|A Chain A, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2C4G|C Chain C, Structure Of Cdk2-Cyclin A With Pha-533514
pdb|2BPM|A Chain A, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BPM|C Chain C, Structure Of Cdk2-Cyclin A With Pha-630529
pdb|2BKZ|A Chain A, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2BKZ|C Chain C, Structure Of Cdk2-Cyclin A With Pha-404611
pdb|2WIH|A Chain A, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIH|C Chain C, Structure Of Cdk2-Cyclin A With Pha-848125
pdb|2WIP|A Chain A, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WIP|C Chain C, Structure Of Cdk2-Cyclin A Complexed With 8-Anilino-1-
Methyl-4,5-Dihydro-1h-Pyrazolo[4,3-H] Quinazoline-3-
Carboxylic Acid
pdb|2WPA|A Chain A, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WPA|C Chain C, Optimisation Of 6,6-Dimethyl Pyrrolo 3,4-C Pyrazoles:
Identification Of Pha-793887, A Potent Cdk Inhibitor
Suitable For Intravenous Dosing
pdb|2WXV|A Chain A, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
pdb|2WXV|C Chain C, Structure Of Cdk2-Cyclin A With A Pyrazolo(4,3-H)
Quinazoline-3-Carboxamide Inhibitor
Length = 309
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 93/217 (42%), Gaps = 40/217 (18%)
Query: 169 GPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQ 225
GPL +++ FQ+ V+ + +G +G VYKA G+ VA+KK +T+G
Sbjct: 1 GPL-VDMENFQK-------VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPST 52
Query: 226 FTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR 285
E+ L ++ H N+V LL + + LV+E++ + L ++ + + L K
Sbjct: 53 AIREISLLKELNHPNIVKLLDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKS 111
Query: 286 YKIACSSARGLAFLHQ------------------------DFGLARLISACETHVSTDIA 321
Y +GLAF H DFGLAR + ++
Sbjct: 112 YLFQL--LQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV 169
Query: 322 GTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAK 357
TL Y PE + +T D++S G I E+VT +
Sbjct: 170 -TLWYRAPEILLGCKYYSTAVDIWSLGCIFAEMVTRR 205
>pdb|4FIF|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIF|B Chain B, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIG|A Chain A, Catalytic Domain Of Human Pak4
pdb|4FIG|B Chain B, Catalytic Domain Of Human Pak4
pdb|4FIH|A Chain A, Catalytic Domain Of Human Pak4 With Qkftglprqw Peptide
pdb|4FII|A Chain A, Catalytic Domain Of Human Pak4 With Rpkplvdp Peptide
pdb|4FIJ|A Chain A, Catalytic Domain Of Human Pak4
Length = 346
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT+ GK VAVKK K Q E+ + +H+N+V +
Sbjct: 84 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG 143
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH----------- 300
+E +V E++ G+L +H ++ + + + + L+ LH
Sbjct: 144 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKS 198
Query: 301 -------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE D++S G
Sbjct: 199 DSILLTHDGRVKLSDFGFCAQVSK-EVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 257
Query: 348 VILLELVTAKEP 359
++++E+V + P
Sbjct: 258 IMVIEMVDGEPP 269
>pdb|3PJC|A Chain A, Crystal Structure Of Jak3 Complexed With A Potent Atp Site
Inhibitor Showing High Selectivity Within The Janus
Kinase Family
Length = 315
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 38/205 (18%)
Query: 185 LTLVDILEDGGFGTVYKATLPD-----GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V G VAVK+ + R F E++ L K H
Sbjct: 13 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL-KALHS 71
Query: 240 NLVLL---LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
+ ++ + Y + LV EY+ +G L +L+ LD ++ + +G+
Sbjct: 72 DFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRAR---LDASRLLLYSSQICKGM 128
Query: 297 AFL------HQDFGLARLISACETHVSTDIAGTLGYIP--------------------PE 330
+L H+D ++ E HV G +P PE
Sbjct: 129 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPE 188
Query: 331 YGQSRMSTTRGDVYSFGVILLELVT 355
+ + + DV+SFGV+L EL T
Sbjct: 189 SLSDNIFSRQSDVWSFGVVLYELFT 213
>pdb|2OZO|A Chain A, Autoinhibited Intact Human Zap-70
Length = 613
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 104/256 (40%), Gaps = 61/256 (23%)
Query: 162 LSSSRSKGPLRINISMFQQPL------------LK---LTLVDI-LEDGGFGTVYKATLP 205
++S P+ ++ S+F+ P LK L + DI L G FG+V +
Sbjct: 299 ITSPDKPRPMPMDTSVFESPFSDPEELKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYR 358
Query: 206 DGKT---VAVKKFSQAKTQGHRQFTAEMETLGKVKHQ----NLVLLLGYCSFDEEKLLVY 258
K VA+K Q + T EM ++ HQ +V L+G C E +LV
Sbjct: 359 MRKKQIDVAIKVLKQGTEKAD---TEEMMREAQIMHQLDNPYIVRLIGVCQ-AEALMLVM 414
Query: 259 EYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ----------------- 301
E G L +L G E + + ++ + G+ +L +
Sbjct: 415 EMAGGGPLHKFL---VGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVN 471
Query: 302 -------DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A +++ + AG L + PE R ++R DV+S+GV + E
Sbjct: 472 RHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWE 531
Query: 353 LVT-----AKEPTGPE 363
++ K+ GPE
Sbjct: 532 ALSYGQKPYKKMKGPE 547
>pdb|4HVD|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-1,2,2-trimethyl-propyl)-amide
pdb|4HVG|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((s)-2-hydroxy-1,2-dimethyl-propyl)- Amide
pdb|4HVH|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-2-hydroxy-1,2-dimethyl-propyl
pdb|4HVI|A Chain A, Jak3 Kinase Domain In Complex With
2-cyclopropyl-5h-pyrrolo[2,3- B]pyrazine-7-carboxylic
Acid ((r)-1-methyl-2-oxo-2-piperidin-1-yl- Ethyl)-amide
Length = 314
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 38/205 (18%)
Query: 185 LTLVDILEDGGFGTVYKATLPD-----GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V G VAVK+ + R F E++ L K H
Sbjct: 12 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL-KALHS 70
Query: 240 NLVLL---LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
+ ++ + Y + LV EY+ +G L +L+ LD ++ + +G+
Sbjct: 71 DFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRAR---LDASRLLLYSSQICKGM 127
Query: 297 AFL------HQDFGLARLISACETHVSTDIAGTLGYIP--------------------PE 330
+L H+D ++ E HV G +P PE
Sbjct: 128 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPE 187
Query: 331 YGQSRMSTTRGDVYSFGVILLELVT 355
+ + + DV+SFGV+L EL T
Sbjct: 188 SLSDNIFSRQSDVWSFGVVLYELFT 212
>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
pdb|1V0O|B Chain B, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate
Ligand Complex
Length = 288
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 34/190 (17%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFS-QAKTQGHRQFTA-EMETLGKVKHQNLVLLLGYCSF 250
+G +G VYKA G+T A+KK + + +G T E+ L ++KH N+V L
Sbjct: 12 EGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT 71
Query: 251 DEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------- 301
+ +LV+E++ + L L G E + AK + + + G+A+ H
Sbjct: 72 KKRLVLVFEHL-DQDLKKLLDVCEGGLESVT-AKSFLLQLLN--GIAYCHDRRVLHRDLK 127
Query: 302 ---------------DFGLARLISACETHVSTDIAGTLGYIPPEY--GQSRMSTTRGDVY 344
DFGLAR + ++ TL Y P+ G + STT D++
Sbjct: 128 PQNLLINREGELKIADFGLARAFGIPVRKYTHEVV-TLWYRAPDVLMGSKKYSTTI-DIW 185
Query: 345 SFGVILLELV 354
S G I E+V
Sbjct: 186 SVGCIFAEMV 195
>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5
pdb|1V0B|B Chain B, Crystal Structure Of The T198a Mutant Of Pfpk5
Length = 288
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/190 (27%), Positives = 83/190 (43%), Gaps = 34/190 (17%)
Query: 193 DGGFGTVYKATLPDGKTVAVKKFS-QAKTQGHRQFTA-EMETLGKVKHQNLVLLLGYCSF 250
+G +G VYKA G+T A+KK + + +G T E+ L ++KH N+V L
Sbjct: 12 EGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT 71
Query: 251 DEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------- 301
+ +LV+E++ + L L G E + AK + + + G+A+ H
Sbjct: 72 KKRLVLVFEHL-DQDLKKLLDVCEGGLESVT-AKSFLLQLLN--GIAYCHDRRVLHRDLK 127
Query: 302 ---------------DFGLARLISACETHVSTDIAGTLGYIPPEY--GQSRMSTTRGDVY 344
DFGLAR + ++ TL Y P+ G + STT D++
Sbjct: 128 PQNLLINREGELKIADFGLARAFGIPVRKYTHEVV-TLWYRAPDVLMGSKKYSTTI-DIW 185
Query: 345 SFGVILLELV 354
S G I E+V
Sbjct: 186 SVGCIFAEMV 195
>pdb|3LXK|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXL|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 327
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/205 (23%), Positives = 78/205 (38%), Gaps = 38/205 (18%)
Query: 185 LTLVDILEDGGFGTVYKATLPD-----GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQ 239
L + L G FG+V G VAVK+ + R F E++ L K H
Sbjct: 25 LKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQIL-KALHS 83
Query: 240 NLVLL---LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
+ ++ + Y + LV EY+ +G L +L+ LD ++ + +G+
Sbjct: 84 DFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRAR---LDASRLLLYSSQICKGM 140
Query: 297 AFL------HQDFGLARLISACETHVSTDIAGTLGYIP--------------------PE 330
+L H+D ++ E HV G +P PE
Sbjct: 141 EYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPE 200
Query: 331 YGQSRMSTTRGDVYSFGVILLELVT 355
+ + + DV+SFGV+L EL T
Sbjct: 201 SLSDNIFSRQSDVWSFGVVLYELFT 225
>pdb|3IS5|A Chain A, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|B Chain B, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|C Chain C, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|D Chain D, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|E Chain E, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
pdb|3IS5|F Chain F, Crystal Structure Of Cdpk Kinase Domain From Toxoplasma
Gondii, Tgme49_018720
Length = 285
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 101/264 (38%), Gaps = 49/264 (18%)
Query: 194 GGFGTVY-KATLPDGKTVAVKKFSQAKTQ-GHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G FG V+ G +K ++ ++Q Q AE+E L + H N++ +
Sbjct: 33 GAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDY 92
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ---------- 301
+V E G L + +A + L ++ LA+ H
Sbjct: 93 HNMYIVMETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKP 152
Query: 302 -----------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVY 344
DFGLA L + E ST+ AGT Y+ PE + R T + D++
Sbjct: 153 ENILFQDTSPHSPIKIIDFGLAELFKSDEH--STNAAGTALYMAPEVFK-RDVTFKCDIW 209
Query: 345 SFGVILLELVTAKEP-TGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMML 403
S GV++ L+T P TG +E V QK ++ + ++ +P+
Sbjct: 210 SAGVVMYFLLTGCLPFTGTSLEE---------VQQKATYKEPNYAVE-------CRPLTP 253
Query: 404 KMLRIAADCVADNPATRPTMLHVL 427
+ + + + +P RP+ VL
Sbjct: 254 QAVDLLKQMLTKDPERRPSAAQVL 277
>pdb|4E1Z|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 291
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 36/179 (20%)
Query: 207 GKTVAVKKFSQ-AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVN 263
G+ VAVK + Q + E+E L + H+++V G C EK LV EY+
Sbjct: 38 GEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPL 97
Query: 264 GSLDLWL-RNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------- 301
GSL +L R+ G ++L A++ G+A+LH
Sbjct: 98 GSLRDYLPRHCVGLAQLLLFAQQ------ICEGMAYLHAQHYIHRALAARNVLLDNDRLV 151
Query: 302 ---DFGLARLISACETH--VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
DFGLA+ + + V D + + PE + DV+SFGV L EL+T
Sbjct: 152 KIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLT 210
>pdb|2W5A|A Chain A, Human Nek2 Kinase Adp-Bound
pdb|2WQO|A Chain A, Structure Of Nek2 Bound To The Aminopyridine Cct241950
pdb|2XK3|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 35
pdb|2XK4|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 17
pdb|2XK6|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 36
pdb|2XK7|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 23
pdb|2XK8|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 15
pdb|2XKC|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 14
pdb|2XKD|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 12
pdb|2XKF|A Chain A, Structure Of Nek2 Bound To Aminopyrazine Compound 2
pdb|2XKE|A Chain A, Structure Of Nek2 Bound To Aminipyrazine Compound 5
pdb|2XNM|A Chain A, Structure Of Nek2 Bound To Cct
pdb|2XNN|A Chain A, Structure Of Nek2 Bound To Cct242430
pdb|2XNO|A Chain A, Structure Of Nek2 Bound To Cct243779
pdb|2XNP|A Chain A, Structure Of Nek2 Bound To Cct244858
pdb|4AFE|A Chain A, Nek2 Bound To Hybrid Compound 21
Length = 279
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 206 DGKTVAVKKFSQ-AKTQGHRQ-FTAEMETLGKVKHQNLV---------------LLLGYC 248
DGK + K+ + T+ +Q +E+ L ++KH N+V +++ YC
Sbjct: 30 DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYC 89
Query: 249 S-----------------FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRA-KRYKIAC 290
DEE +L + +L R + G H VL R K +
Sbjct: 90 EGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFL 149
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS-TTRGDVYSFGVI 349
+ + DFGLAR+++ +T + GT Y+ PE +RMS + D++S G +
Sbjct: 150 DGKQNVKL--GDFGLARILNH-DTSFAKTFVGTPYYMSPE-QMNRMSYNEKSDIWSLGCL 205
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDV 388
L EL P Q++ + F+++ + +D++
Sbjct: 206 LYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDEL 244
>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk-1 Bound To Amp-Pcp
pdb|2Z7R|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Staurosporine
pdb|2Z7S|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human
Rsk1 Bound To Purvalnol A
Length = 321
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 86/207 (41%), Gaps = 39/207 (18%)
Query: 185 LTLVDILEDGGFGTVY---KATLPD-GKTVAVKKFSQAKTQGHRQFTAEME--TLGKVKH 238
L+ +L G FG V+ K T PD G A+K +A + + +ME L V H
Sbjct: 30 FELLKVLGQGSFGKVFLVRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNH 89
Query: 239 QNLVLLLGYCSFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSS-ARGL 296
V+ L Y E KL L+ +++ G DL+ R S EV+ + K + A GL
Sbjct: 90 P-FVVKLHYAFQTEGKLYLILDFLRGG--DLFTRL---SKEVMFTEEDVKFYLAELALGL 143
Query: 297 AFLHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYG 332
LH DFGL++ E + GT+ Y+ PE
Sbjct: 144 DHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYS-FCGTVEYMAPEVV 202
Query: 333 QSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + D +S+GV++ E++T P
Sbjct: 203 NRQGHSHSADWWSYGVLMFEMLTGSLP 229
>pdb|3EYG|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
pdb|3EYH|A Chain A, Crystal Structures Of Jak1 And Jak2 Inhibitor Complexes
Length = 290
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 87/217 (40%), Gaps = 39/217 (17%)
Query: 173 INISMFQQPLLKLTLVDILEDGGFGTVYKATL-PDG----KTVAVKKFSQAKTQGH-RQF 226
++ + F++ LK + L +G FG V P+G + VAVK H
Sbjct: 1 VDPTHFEKRFLKR--IRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADL 58
Query: 227 TAEMETLGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVNGSLDLWLRNATGSHEVLDRAK 284
E+E L + H+N+V G C+ D L+ E++ +GSL +L ++ +
Sbjct: 59 KKEIEILRNLYHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNK---INLKQ 115
Query: 285 RYKIACSSARGLAFL--------------------HQ----DFGLARLISACETH--VST 318
+ K A +G+ +L HQ DFGL + I + V
Sbjct: 116 QLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEXXTVKD 175
Query: 319 DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
D + + PE DV+SFGV L EL+T
Sbjct: 176 DRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLT 212
>pdb|4E20|A Chain A, Structure Of Mouse Tyk-2 Complexed To A 3-Aminoindazole
Inhibitor
Length = 290
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 75/179 (41%), Gaps = 36/179 (20%)
Query: 207 GKTVAVKKFSQ-AKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEK--LLVYEYMVN 263
G+ VAVK + Q + E+E L + H+++V G C EK LV EY+
Sbjct: 37 GEMVAVKALKEGCGPQLRSGWQREIEILRTLYHEHIVKYKGCCEDQGEKSVQLVMEYVPL 96
Query: 264 GSLDLWL-RNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------- 301
GSL +L R+ G ++L A++ G+A+LH
Sbjct: 97 GSLRDYLPRHCVGLAQLLLFAQQ------ICEGMAYLHAQHYIHRALAARNVLLDNDRLV 150
Query: 302 ---DFGLARLISACETH--VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT 355
DFGLA+ + + V D + + PE + DV+SFGV L EL+T
Sbjct: 151 KIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKECKFYYASDVWSFGVTLYELLT 209
>pdb|4FIE|A Chain A, Full-Length Human Pak4
pdb|4FIE|B Chain B, Full-Length Human Pak4
Length = 423
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 31/192 (16%)
Query: 193 DGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
+G G V AT+ GK VAVKK K Q E+ + +H+N+V +
Sbjct: 161 EGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG 220
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH----------- 300
+E +V E++ G+L +H ++ + + + + L+ LH
Sbjct: 221 DELWVVMEFLEGGAL-----TDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKS 275
Query: 301 -------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
DFG +S E + GT ++ PE D++S G
Sbjct: 276 DSILLTHDGRVKLSDFGFCAQVSK-EVPRRKXLVGTPYWMAPELISRLPYGPEVDIWSLG 334
Query: 348 VILLELVTAKEP 359
++++E+V + P
Sbjct: 335 IMVIEMVDGEPP 346
>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOI|C Chain C, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 299
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNA-TGSHEVLDRAKRYKIACSSARGLAFLHQ-- 301
L + + LV+E++ D +A TG L ++ +++ +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFLHQDLKDFMDASALTGIPLPLIKSYLFQL----LQGLAFCHSHR 123
Query: 302 ----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMST 338
DFGLAR ++ TL Y PE + +
Sbjct: 124 VLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYS 182
Query: 339 TRGDVYSFGVILLELVTAK 357
T D++S G I E+VT +
Sbjct: 183 TAVDIWSLGCIFAEMVTRR 201
>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1GIJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|2DS1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
Length = 298
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E+ V+ L ++ + + L K Y +GLAF H
Sbjct: 67 LDVIHTENKLYLVFEH-VHQDLKTFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 123
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 182
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 183 AVDIWSLGCIFAEMVTRR 200
>pdb|2JAV|A Chain A, Human Kinase With Pyrrole-Indolinone Ligand
pdb|2W5B|A Chain A, Human Nek2 Kinase Atpgammas-bound
pdb|2W5H|A Chain A, Human Nek2 Kinase Apo
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 92/219 (42%), Gaps = 40/219 (18%)
Query: 206 DGKTVAVKKFSQ-AKTQGHRQ-FTAEMETLGKVKHQNLV---------------LLLGYC 248
DGK + K+ + T+ +Q +E+ L ++KH N+V +++ YC
Sbjct: 30 DGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYIVMEYC 89
Query: 249 S-----------------FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRA-KRYKIAC 290
DEE +L + +L R + G H VL R K +
Sbjct: 90 EGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFL 149
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS-TTRGDVYSFGVI 349
+ + DFGLAR+++ +T + GT Y+ PE +RMS + D++S G +
Sbjct: 150 DGKQNVKL--GDFGLARILNH-DTSFAKAFVGTPYYMSPE-QMNRMSYNEKSDIWSLGCL 205
Query: 350 LLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDV 388
L EL P Q++ + F+++ + +D++
Sbjct: 206 LYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDEL 244
>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOK|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Nu6102
pdb|4EOL|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EOL|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 69
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNA-TGSHEVLDRAKRYKIACSSARGLAFLHQ-- 301
L + + LV+E++ D +A TG L ++ +++ +GLAF H
Sbjct: 70 LDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQL----LQGLAFCHSHR 125
Query: 302 ----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMST 338
DFGLAR ++ TL Y PE + +
Sbjct: 126 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYS 184
Query: 339 TRGDVYSFGVILLELVTAK 357
T D++S G I E+VT +
Sbjct: 185 TAVDIWSLGCIFAEMVTRR 203
>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
pdb|4EOJ|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human
Cyclin A3 Complex With Atp
Length = 302
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 34/199 (17%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 70
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNA-TGSHEVLDRAKRYKIACSSARGLAFLHQ-- 301
L + + LV+E++ D +A TG L ++ +++ +GLAF H
Sbjct: 71 LDVIHTENKLYLVFEFLSMDLKDFMDASALTGIPLPLIKSYLFQL----LQGLAFCHSHR 126
Query: 302 ----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMST 338
DFGLAR ++ TL Y PE + +
Sbjct: 127 VLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYS 185
Query: 339 TRGDVYSFGVILLELVTAK 357
T D++S G I E+VT +
Sbjct: 186 TAVDIWSLGCIFAEMVTRR 204
>pdb|1U59|A Chain A, Crystal Structure Of The Zap-70 Kinase Domain In Complex
With Staurosporine
Length = 287
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 90/218 (41%), Gaps = 46/218 (21%)
Query: 185 LTLVDI-LEDGGFGTVYKATLPDGKT---VAVKKFSQAKTQGHRQFTAEMETLGKVKHQ- 239
L + DI L G FG+V + K VA+K Q + T EM ++ HQ
Sbjct: 11 LLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKAD---TEEMMREAQIMHQL 67
Query: 240 ---NLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGL 296
+V L+G C E +LV E G L +L G E + + ++ + G+
Sbjct: 68 DNPYIVRLIGVCQ-AEALMLVMEMAGGGPLHKFL---VGKREEIPVSNVAELLHQVSMGM 123
Query: 297 AFLHQ------------------------DFGLARLISACETHVSTDIAGT--LGYIPPE 330
+L + DFGL++ + A +++ + AG L + PE
Sbjct: 124 KYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPE 183
Query: 331 YGQSRMSTTRGDVYSFGVILLELVT-----AKEPTGPE 363
R ++R DV+S+GV + E ++ K+ GPE
Sbjct: 184 CINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPE 221
>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/247 (25%), Positives = 94/247 (38%), Gaps = 54/247 (21%)
Query: 194 GGFGTVYKATLPDG------KTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGY 247
G +GTVYKA P K+V V + + A + L +H N+V L+
Sbjct: 15 GAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVRLMDV 74
Query: 248 CS---FDEE--KLLVYEYMVNGSLDLWLRNAT----GSHEVLDRAKRYKIACSSARGLAF 298
C+ D E LV+E+ V+ L +L A + + D +++ RGL F
Sbjct: 75 CATSRTDREIKVTLVFEH-VDQDLRTYLDKAPPPGLPAETIKDLMRQF------LRGLDF 127
Query: 299 LH------------------------QDFGLARLISACETHVSTD-IAGTLGYIPPEYGQ 333
LH DFGLAR+ S ++ D + TL Y PE
Sbjct: 128 LHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS---YQMALDPVVVTLWYRAPEVLL 184
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTV 393
T D++S G I E+ K P F A+ +G +F + DD
Sbjct: 185 QSTYATPVDMWSVGCIFAEMFRRK----PLFCGNSEADQLGKIFDLIGLPPEDDWPRDVS 240
Query: 394 LNAGSKP 400
L G+ P
Sbjct: 241 LPRGAFP 247
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/263 (25%), Positives = 99/263 (37%), Gaps = 45/263 (17%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAK--TQGHRQFTAEMETLGKVKHQNLVLLLGYCSF 250
G F V + L G A K + K + H++ E +KH N+V L S
Sbjct: 15 GAFSVVRRCVKLCTGHEYAAKIINTKKLSARDHQKLEREARICRLLKHSNIVRLHDSISE 74
Query: 251 DEEKLLVYEYMVNGSL--DLWLRN----ATGSHEV-----------------LDRAKRYK 287
+ LV++ + G L D+ R A SH + D
Sbjct: 75 EGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRDLKPENL 134
Query: 288 IACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFG 347
+ S +G A DFGLA + + AGT GY+ PE + D+++ G
Sbjct: 135 LLASKCKGAAVKLADFGLAIEVQG-DQQAWFGFAGTPGYLSPEVLRKEAYGKPVDIWACG 193
Query: 348 VILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGSKPMMLKM 405
VIL L+ P E Q K ++Q++K A D P + +K ++ +M
Sbjct: 194 VILYILLVGYPPFWDEDQHK--------LYQQIKA-GAYDFPSPEWDTVTPEAKNLINQM 244
Query: 406 LRIAADCVADNPATRPTMLHVLK 428
L I NPA R T LK
Sbjct: 245 LTI-------NPAKRITAHEALK 260
>pdb|4A4X|A Chain A, Nek2-Ede Bound To Cct248662
Length = 279
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 96/232 (41%), Gaps = 41/232 (17%)
Query: 194 GGFGTVYKATLP-DGKTVAVKKFSQ-AKTQGHRQ-FTAEMETLGKVKHQNLV-------- 242
G +G K DGK + K+ + T+ +Q +E+ L ++KH N+V
Sbjct: 17 GSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIID 76
Query: 243 -------LLLGYCS-----------------FDEEKLLVYEYMVNGSLDLWLRNATGSHE 278
+++ YC DEE +L + +L R + G H
Sbjct: 77 RTNTTLYIVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHT 136
Query: 279 VLDRA-KRYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
VL R K + + + DFGLAR+++ E + + GT Y+ PE +RMS
Sbjct: 137 VLHRDLKPANVFLDGKQNVKL--GDFGLARILNHDED-FAKEFVGTPYYMSPE-QMNRMS 192
Query: 338 -TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDV 388
+ D++S G +L EL P Q++ + F+++ + +D++
Sbjct: 193 YNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKFRRIPYRYSDEL 244
>pdb|2CLQ|A Chain A, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
pdb|2CLQ|B Chain B, Structure Of Mitogen-Activated Protein Kinase Kinase
Kinase 5
Length = 295
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/207 (23%), Positives = 81/207 (39%), Gaps = 48/207 (23%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
+L G +G VY L + +A+K+ + ++ + E+ +KH+N+V LG
Sbjct: 29 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-- 86
Query: 249 SFDEEKL--LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA-RGLAFLHQ---- 301
SF E + E + GSL LR+ G + D + GL +LH
Sbjct: 87 SFSENGFIKIFMEQVPGGSLSALLRSKWGP--LKDNEQTIGFYTKQILEGLKYLHDNQIV 144
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPE--------YG 332
DFG ++ ++ T GTL Y+ PE YG
Sbjct: 145 HRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTET-FTGTLQYMAPEIIDKGPRGYG 203
Query: 333 QSRMSTTRGDVYSFGVILLELVTAKEP 359
++ D++S G ++E+ T K P
Sbjct: 204 KA------ADIWSLGCTIIEMATGKPP 224
>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 34/199 (17%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 15 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 74
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 75 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 131
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEY--GQSRMST 338
DFGLAR + ++ TL Y PE G ST
Sbjct: 132 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGXKYYST 190
Query: 339 TRGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 191 A-VDIWSLGCIFAEMVTRR 208
>pdb|2Y4I|B Chain B, Ksr2-Mek1 Heterodimer
Length = 319
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 7/148 (4%)
Query: 157 DYNLYLSSSRSKGPLRINISMFQQ----PLLKLTLVDILEDGGFGTVYKATLPDGKTVAV 212
+ NL L S+RS S+F Q P +L + +++ G FG VY + +
Sbjct: 3 EMNLSLLSARSFPRKASQTSIFLQEWDIPFEQLEIGELIGKGRFGQVYHGRWHGEVAIRL 62
Query: 213 KKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN 272
+ + F E+ + +H+N+VL +G C ++ +L +R+
Sbjct: 63 IDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAIITSLCKGRTLYSVVRD 122
Query: 273 ATGSHEVLDRAKRYKIACSSARGLAFLH 300
A VLD K +IA +G+ +LH
Sbjct: 123 AKI---VLDVNKTRQIAQEIVKGMGYLH 147
>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine
pdb|2R3Q|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3M|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3I|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3N|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3O|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3P|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3K|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3J|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3L|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|1W8C|A Chain A, Co-crystal Structure Of
6-cyclohexylmethoxy-8-isopropyl-9h- Purin-2-ylamine And
Monomeric Cdk2
Length = 299
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 84/199 (42%), Gaps = 34/199 (17%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEY--GQSRMST 338
DFGLAR + ++ TL Y PE G ST
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGXKYYST 183
Query: 339 TRGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 A-VDIWSLGCIFAEMVTRR 201
>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXQ|A Chain A, Cdk2 In Complex With 3 Molecules Of
8-Anilino-1-Naphthalene Sulfonate
pdb|3PXR|A Chain A, Apo Cdk2 Crystallized From Jeffamine
pdb|3PXY|A Chain A, Cdk2 In Complex With Inhibitor Jws648
pdb|3PXZ|A Chain A, Cdk2 Ternary Complex With Jws648 And Ans
pdb|3PY0|A Chain A, Cdk2 In Complex With Inhibitor Su9516
pdb|3PY1|A Chain A, Cdk2 Ternary Complex With Su9516 And Ans
pdb|3QL8|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-260
pdb|3QQF|A Chain A, Cdk2 In Complex With Inhibitor L1
pdb|3QQG|A Chain A, Cdk2 In Complex With Inhibitor L2-5
pdb|3QQH|A Chain A, Cdk2 In Complex With Inhibitor L2-2
pdb|3QQJ|A Chain A, Cdk2 In Complex With Inhibitor L2
pdb|3QQL|A Chain A, Cdk2 In Complex With Inhibitor L3
pdb|3QRT|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc2-55
pdb|3QRU|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-12
pdb|3QWJ|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-142
pdb|3QWK|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-150
pdb|3QX2|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-190
pdb|3QX4|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-78
pdb|3QXO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-84
pdb|3QZF|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-52
pdb|3QZG|A Chain A, Cdk2 In Complex With Inhibitor Jws-6-76
pdb|3QZH|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-124
pdb|3QZI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-126
pdb|3R1Q|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-102
pdb|3R1S|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-127
pdb|3R1Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-134
pdb|3R28|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-140
pdb|3R6X|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-158
pdb|3R71|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-162
pdb|3R73|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-164
pdb|3R7E|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-67
pdb|3R7I|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-74
pdb|3R7U|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-75
pdb|3R7V|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-9
pdb|3R7Y|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-88
pdb|3R83|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-92
pdb|3R8L|A Chain A, Cdk2 In Complex With Inhibitor L3-4
pdb|3R8M|A Chain A, Cdk2 In Complex With Inhibitor L3-3
pdb|3R8P|A Chain A, Cdk2 In Complex With Inhibitor Nsk-Mc1-6
pdb|3RAI|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-160
pdb|3RM6|A Chain A, Cdk2 In Complex With Inhibitor Kvr-2-80
pdb|3RM7|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-91
pdb|3ROY|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-154
pdb|3RPO|A Chain A, Cdk2 In Complex With Inhibitor Kvr-1-156
pdb|4EZ3|A Chain A, Cdk2 In Complex With Nsc 134199
pdb|4EZ7|A Chain A, Cdk2 In Complex With Staurosporine And 2 Molecules Of
8-Anilino-1- Naphthalene Sulfonic Acid
pdb|3QQK|A Chain A, Cdk2 In Complex With Inhibitor L4
pdb|3QTQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-137
pdb|3QTR|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-148
pdb|3QTS|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-12
pdb|3QTU|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-132
pdb|3QTW|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-13
pdb|3QTX|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-35
pdb|3QTZ|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-36
pdb|3QU0|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-38
pdb|3QXP|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
pdb|3R8U|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-132
pdb|3R8V|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-135
pdb|3R8Z|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-136
pdb|3R9D|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-135
pdb|3R9H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-142
pdb|3R9N|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-21
pdb|3R9O|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-143
pdb|3RAH|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-22
pdb|3RAK|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-32
pdb|3RAL|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-34
pdb|3RJC|A Chain A, Cdk2 In Complex With Inhibitor L4-12
pdb|3RK5|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-72
pdb|3RK7|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-71
pdb|3RK9|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-74
pdb|3RKB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-73
pdb|3RMF|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-33
pdb|3RNI|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-86
pdb|3RPR|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-49
pdb|3RPV|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-88
pdb|3RPY|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-40
pdb|3RZB|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-23
pdb|3S00|A Chain A, Cdk2 In Complex With Inhibitor L4-14
pdb|3S0O|A Chain A, Cdk2 In Complex With Inhibitor Rc-1-138
pdb|3S1H|A Chain A, Cdk2 In Complex With Inhibitor Rc-2-39
pdb|3SQQ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-96
pdb|4GCJ|A Chain A, Cdk2 In Complex With Inhibitor Rc-3-89
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 15 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 74
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 75 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 131
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 132 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 190
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 191 AVDIWSLGCIFAEMVTRR 208
>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3
pdb|3G33|C Chain C, Crystal Structure Of Cdk4CYCLIN D3
Length = 308
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/249 (26%), Positives = 93/249 (37%), Gaps = 55/249 (22%)
Query: 194 GGFGTVYKATLP-DGKTVAVKKFSQAKTQGHR--------QFTAEMETLGKVKHQNLVLL 244
G +GTVYKA P G VA+K G + A + L +H N+V L
Sbjct: 20 GAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRL 79
Query: 245 LGYCS---FDEE--KLLVYEYMVNGSLDLWLRNAT----GSHEVLDRAKRYKIACSSARG 295
+ C+ D E LV+E+ V+ L +L A + + D +++ RG
Sbjct: 80 MDVCATSRTDREIKVTLVFEH-VDQDLRTYLDKAPPPGLPAETIKDLMRQF------LRG 132
Query: 296 LAFLH------------------------QDFGLARLISACETHVSTDIAGTLGYIPPEY 331
L FLH DFGLAR+ S T + TL Y PE
Sbjct: 133 LDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSY--QMALTPVVVTLWYRAPEV 190
Query: 332 GQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDP 391
T D++S G I E+ K P F A+ +G +F + DD
Sbjct: 191 LLQSTYATPVDMWSVGCIFAEMFRRK----PLFCGNSEADQLGKIFDLIGLPPEDDWPRD 246
Query: 392 TVLNAGSKP 400
L G+ P
Sbjct: 247 VSLPRGAFP 255
>pdb|3VW6|A Chain A, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
pdb|3VW6|B Chain B, Crystal Structure Of Human Apoptosis Signal-Regulating
Kinase 1 (Ask1) With Imidazopyridine Inhibitor
Length = 269
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 36/201 (17%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
+L G +G VY L + +A+K+ + ++ + E+ +KH+N+V LG
Sbjct: 15 VLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLG-- 72
Query: 249 SFDEEKL--LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSA-RGLAFLHQ---- 301
SF E + E + GSL LR+ G + D + GL +LH
Sbjct: 73 SFSENGFIKIFMEQVPGGSLSALLRSKWGP--LKDNEQTIGFYTKQILEGLKYLHDNQIV 130
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQS--RMST 338
DFG ++ ++ T GTL Y+ PE R
Sbjct: 131 HRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTET-FTGTLQYMAPEIIDKGPRGYG 189
Query: 339 TRGDVYSFGVILLELVTAKEP 359
D++S G ++E+ T K P
Sbjct: 190 KAADIWSLGCTIIEMATGKPP 210
>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide,
Compound (S)-8b
pdb|3IG7|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efp With Cdk-2
pdb|3IGG|A Chain A, Novel Cdk-5 Inhibitors - Crystal Structure Of Inhibitor
Efq With Cdk-2
pdb|1B38|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1B39|A Chain A, Human Cyclin-Dependent Kinase 2 Phosphorylated On Thr 160
pdb|1E1V|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu2058
pdb|1E1X|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Nu6027
pdb|1H00|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H07|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1H08|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|2R3R|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|4ACM|A Chain A, Cdk2 In Complex With
3-Amino-6-(4-{[2-(Dimethylamino)ethyl]
Sulfamoyl}-Phenyl)-N-Pyridin-3-Ylpyrazine-2-Carboxamide
pdb|3SW4|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|3SW7|A Chain A, Crystal Structure Of The Cdk2 In Complex With
Thiazolylpyrimidine Inhibitor
pdb|1OIQ|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
pdb|1V1K|A Chain A, Cdk2 In Complex With A Disubstituted 4, 6-Bis Anilino
Pyrimidine Cdk4 Inhibitor
pdb|1URW|A Chain A, Cdk2 In Complex With An Imidazo[1,2-B]pyridazine
pdb|2VV9|A Chain A, Cdk2 In Complex With An Imidazole Piperazine
pdb|2W06|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5c
pdb|2R3G|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3H|A Chain A, Crystal Structure Of Cyclin-Dependent Kinase 2 With
Inhibitor
pdb|2R3F|A Chain A, Crystal Structure Of Cyclin-dependent Kinase 2 With
Inhibitor
Length = 299
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1FIN|C Chain C, Cyclin A-Cyclin-Dependent Kinase 2 Complex
pdb|1CKP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Purvalanol B
pdb|1BUH|A Chain A, Crystal Structure Of The Human Cdk2 Kinase Complex With
Cell Cycle-Regulatory Protein Ckshs1
pdb|1DM2|A Chain A, Human Cyclin-Dependent Kinase 2 Complexed With The
Inhibitor Hymenialdisine
pdb|1DI8|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With
4-[3-Hydroxyanilino]-6,7-Dimethoxyquinazoline
pdb|1F5Q|A Chain A, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1F5Q|C Chain C, Crystal Structure Of Murine Gamma Herpesvirus Cyclin
Complexed To Human Cyclin Dependent Kinase 2
pdb|1FVT|A Chain A, The Structure Of Cyclin-Dependent Kinase 2 (Cdk2) In
Complex With An Oxindole Inhibitor
pdb|1FVV|A Chain A, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1FVV|C Chain C, The Structure Of Cdk2CYCLIN A IN COMPLEX WITH AN OXINDOLE
Inhibitor
pdb|1JSV|A Chain A, The Structure Of Cyclin-dependent Kinase 2 (cdk2) In
Complex With 4-[(6-amino-4-pyrimidinyl)
Amino]benzenesulfonamide
pdb|1G5S|A Chain A, Crystal Structure Of Human Cyclin Dependent Kinase 2
(Cdk2) In Complex With The Inhibitor H717
pdb|1JVP|P Chain P, Crystal Structure Of Human Cdk2 (Unphosphorylated) In
Complex With Pkf049-365
pdb|1GIH|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4
Inhibitor
pdb|1KE5|A Chain A, Cdk2 Complexed With N-methyl-4-{[(2-oxo-1,2-dihydro-3h-
Indol-3-ylidene)methyl]amino}benzenesulfonamide
pdb|1KE6|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
N-Methyl-{4-
[2-(7-Oxo-6,7-Dihydro-8h-[1,3]thiazolo[5,4-E]indol-8-
Ylidene)hydrazino]phenyl}methanesulfonamide
pdb|1KE7|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[(2,2-
Dioxido-1,
3-Dihydro-2-Benzothien-5-Yl)amino]methylene}-5-
(1,3-Oxazol-5-Yl)-1,3-Dihydro-2h-Indol-2-One
pdb|1KE8|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With
4-{[(2-Oxo-
1,2-Dihydro-3h-Indol-3-Ylidene)methyl]amino}-N-(1,3-
Thiazol-2-Yl)benzenesulfonamide
pdb|1KE9|A Chain A, Cyclin-Dependent Kinase 2 (Cdk2) Complexed With 3-{[4-
({[amino(Imino)methyl]aminosulfonyl)anilino]methylene}-
2- Oxo-2,3-Dihydro-1h-Indole
pdb|1H0V|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor
2-Amino-6-[(R)-Pyrrolidino-5'-Yl]methoxypurine
pdb|1H0W|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 2-Amino-6-[cyclohex-3-Enyl]methoxypurine
pdb|1P2A|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Trisubstituted Naphthostyril Inhibitor
pdb|1OKV|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKV|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Ile-Phe-Nh2
pdb|1OKW|A Chain A, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OKW|C Chain C, Cyclin A Binding Groove Inhibitor
Ac-Arg-Arg-Leu-Asn-(M-Cl-Phe)-Nh2
pdb|1OL1|A Chain A, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL1|C Chain C, Cyclin A Binding Groove Inhibitor
H-Cit-Cit-Leu-Ile-(P-F-Phe)-Nh2
pdb|1OL2|A Chain A, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1OL2|C Chain C, Cyclin A Binding Groove Inhibitor
H-Arg-Arg-Leu-Asn-(P-F-Phe)-Nh2
pdb|1PW2|A Chain A, Apo Structure Of Human Cyclin-Dependent Kinase 2
pdb|1PXI|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-(2,5-dichloro-thiophen-3-yl)-pyrimidin-2-
Ylamine
pdb|1PXJ|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Ylamine
pdb|1PXK|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-dimethyl-thiazol-5-yl)pyrimidin-2-yl]-
N'-hydroxyiminoformamide
pdb|1PXL|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2,4-dimethyl-thiazol-5-yl)-pyrimidin-2-yl]-
(4-trifluoromethyl-phenyl)-amine
pdb|1R78|A Chain A, Cdk2 Complex With A 4-alkynyl Oxindole Inhibitor
pdb|1PXM|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 3-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-
Ylamino]-Phenol
pdb|1PXN|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor 4-[4-(4-Methyl-2-Methylamino-Thiazol-5-Yl)-
Pyrimidin-2-Ylamino]-Phenol
pdb|1PXO|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
[4-(2-Amino-4-Methyl-Thiazol-5-Yl)-Pyrimidin-2-
Yl]-(3-Nitro-Phenyl)-Amine
pdb|1PXP|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor
N-[4-(2,4-Dimethyl-Thiazol-5-Yl)-Pyrimidin-2-Yl]-
N',N'-Dimethyl-Benzene-1,4-Diamine
pdb|1VYZ|A Chain A, Structure Of Cdk2 Complexed With Pnu-181227
pdb|1PYE|A Chain A, Crystal Structure Of Cdk2 With Inhibitor
pdb|1URC|A Chain A, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1URC|C Chain C, Cyclin A Binding Groove Inhibitor Ace-Arg-Lys-Leu- Phe-Gly
pdb|1W0X|C Chain C, Crystals Structure Of Human Cdk2 In Complex With The
Inhibitor Olomoucine.
pdb|1WCC|A Chain A, Screening For Fragment Binding By X-Ray Crystallography
pdb|1Y8Y|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|1Y91|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Pyrazolo[1, 5-A]pyrimidine Inhibitor
pdb|2BHE|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 5-Bromo-Indirubine
pdb|2BHH|A Chain A, Human Cyclin Dependent Protein Kinase 2 In Complex With
The Inhibitor 4-Hydroxypiperindinesulfonyl-Indirubine
pdb|2B52|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Dph-
042562
pdb|2B53|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With Din-
234325
pdb|2B54|A Chain A, Human Cyclin Dependent Kinase 2 (Ckd2)complexed With Din-
232305
pdb|2B55|A Chain A, Human Cyclin Dependent Kinase 2 (Cdk2) Complexed With
Indenopyraxole Din-101312
pdb|2BTR|A Chain A, Structure Of Cdk2 Complexed With Pnu-198873
pdb|2BTS|A Chain A, Structure Of Cdk2 Complexed With Pnu-230032
pdb|2C68|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C69|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6I|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6K|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6L|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6M|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6O|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2EXM|A Chain A, Human Cdk2 In Complex With Isopentenyladenine
pdb|1YKR|A Chain A, Crystal Structure Of Cdk2 With An Aminoimidazo Pyridine
Inhibitor
pdb|2A0C|X Chain X, Human Cdk2 In Complex With Olomoucine Ii, A Novel 2,6,9-
Trisubstituted Purine Cyclin-Dependent Kinase Inhibitor
pdb|2C5N|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5N|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5O|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5V|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5X|C Chain C, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2C5Y|A Chain A, Differential Binding Of Inhibitors To Active And Inactive
Cdk2 Provides Insights For Drug Design
pdb|2A4L|A Chain A, Human Cyclin-Dependent Kinase 2 In Complex With
Roscovitine
pdb|2FVD|A Chain A, Cyclin Dependent Kinase 2 (Cdk2) With Diaminopyrimidine
Inhibitor
pdb|2I40|A Chain A, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2I40|C Chain C, Cdk2CYCLIN A COMPLEXED WITH A THIOPHENE CARBOXAMIDE
INHIBITOR
pdb|2CLX|A Chain A, 4-Arylazo-3,5-Diamino-1h-Pyrazole Cdk Inhibitors: Sar
Study, Crystal Structure In Complex With Cdk2,
Selectivity, And Cellular Effects
pdb|2DUV|A Chain A, Structure Of Cdk2 With A 3-Hydroxychromones
pdb|2UUE|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UUE|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2UZN|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZO|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2V0D|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|1AQ1|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The
Inhibitor Staurosporine
pdb|1HCK|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|1HCL|A Chain A, Human Cyclin-Dependent Kinase 2
pdb|2J9M|A Chain A, Crystal Structure Of Cdk2 In Complex With Macrocyclic
Aminopyrimidine
pdb|2V22|A Chain A, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2V22|C Chain C, Replace: A Strategy For Iterative Design Of Cyclin Binding
Groove Inhibitors
pdb|2VTA|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTH|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design
pdb|2VTI|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTJ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTL|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTM|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTN|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTO|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTP|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTQ|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTR|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTS|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VTT|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2VU3|A Chain A, Identification Of N-(4-Piperidinyl)-4-(2,6-
Dichlorobenzoylamino)-1h-Pyrazole-3-Carboxamide
(At7519), A Novel Cyclin Dependent Kinase Inhibitor
Using Fragment- Based X-Ray Crystallography And
Structure Based Drug Design.
pdb|2R64|A Chain A, Crystal Structure Of A 3-Aminoindazole Compound With Cdk2
pdb|2W05|A Chain A, Structure Of Cdk2 In Complex With An Imidazolyl
Pyrimidine, Compound 5b
pdb|3EID|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EID|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|A Chain A, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EJ1|C Chain C, Cdk2CYCLINA COMPLEXED WITH A PYRAZOLOPYRIDAZINE INHIBITOR
pdb|3EOC|A Chain A, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|3EOC|C Chain C, Cdk2/cyclina Complexed With A Imidazo Triazin-2-amine
pdb|2W1H|A Chain A, Fragment-Based Discovery Of The Pyrazol-4-Yl Urea
(At9283), A Multi-Targeted Kinase Inhibitor With Potent
Aurora Kinase Activity
pdb|3F5X|A Chain A, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3F5X|C Chain C, Cdk-2-Cyclin Complex With Indazole Inhibitor 9 Bound At
Its Active Site
pdb|3FZ1|A Chain A, Crystal Structure Of A Benzthiophene Inhibitor Bound To
Human Cyclin-Dependent Kinase-2 (Cdk-2)
pdb|2WEV|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WEV|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WFY|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2WHB|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|A Chain A, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|2X1N|C Chain C, Truncation And Optimisation Of Peptide Inhibitors Of Cdk2,
Cyclin A Through Structure Guided Design
pdb|3LFN|A Chain A, Crystal Structure Of Cdk2 With Sar57, An Aminoindazole
Type Inhibitor
pdb|3LFQ|A Chain A, Crystal Structure Of Cdk2 With Sar60, An Aminoindazole
Type Inhibitor
pdb|3LFS|A Chain A, Crystal Structure Of Cdk2 With Sar37, An Aminoindazole
Type Inhibitor
pdb|2XMY|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|2XNB|A Chain A, Discovery And Characterisation Of
2-Anilino-4-(Thiazol-5-Yl) Pyrimidine Transcriptional
Cdk Inhibitors As Anticancer Agents
pdb|3LE6|A Chain A, The Structure Of Cyclin Dependent Kinase 2 (Ckd2) With A
Pyrazolobenzodiazepine Inhibitor
pdb|3NS9|A Chain A, Crystal Structure Of Cdk2 In Complex With Inhibitor Bs-194
pdb|3S2P|A Chain A, Crystal Structure Of Cdk2 With A 2-Aminopyrimidine
Compound
pdb|3UNJ|A Chain A, Cdk2 In Complex With Inhibitor Yl1-038-31
pdb|3UNK|A Chain A, Cdk2 In Complex With Inhibitor Yl5-083
pdb|3TI1|A Chain A, Cdk2 In Complex With Sunitinib
pdb|3TIY|A Chain A, Cdk2 In Complex With Nsc 35676
pdb|3TIZ|A Chain A, Cdk2 In Complex With Nsc 111848
Length = 298
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 67 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 123
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 182
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 183 AVDIWSLGCIFAEMVTRR 200
>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
pdb|2W9Z|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 91/246 (36%), Gaps = 52/246 (21%)
Query: 194 GGFGTVYKATLPDG------KTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGY 247
G +GTVYKA P K+V V + + A + L +H N+V L+
Sbjct: 15 GAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVRLMDV 74
Query: 248 CS---FDEE--KLLVYEYMVNGSLDLWLRNAT----GSHEVLDRAKRYKIACSSARGLAF 298
C+ D E LV+E+ V+ L +L A + + D +++ RGL F
Sbjct: 75 CATSRTDREIKVTLVFEH-VDQDLRTYLDKAPPPGLPAETIKDLMRQF------LRGLDF 127
Query: 299 LH------------------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQS 334
LH DFGLAR+ S + TL Y PE
Sbjct: 128 LHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSY--QMALAPVVVTLWYRAPEVLLQ 185
Query: 335 RMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVL 394
T D++S G I E+ K P F A+ +G +F + DD L
Sbjct: 186 STYATPVDMWSVGCIFAEMFRRK----PLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSL 241
Query: 395 NAGSKP 400
G+ P
Sbjct: 242 PRGAFP 247
>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A
Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine
Length = 299
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site
pdb|3EZV|A Chain A, Cdk-2 With Indazole Inhibitor 9 Bound At Its Active Site
Length = 300
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 68
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 69 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 125
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 126 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 184
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 185 AVDIWSLGCIFAEMVTRR 202
>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2
Complexed With A Nucleoside Inhibitor
Length = 298
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 84/198 (42%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 67 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 123
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 182
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 183 AVDIWSLGCIFAEMVTRR 200
>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW6|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
pdb|2IW9|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed
With A Bisanilinopyrimidine Inhibitor
Length = 302
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 70
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 71 LDVIHTENKLYLVFEFL-HQDLKTFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 127
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 128 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 186
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 187 AVDIWSLGCIFAEMVTRR 204
>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
pdb|4EOM|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With Atp
Length = 301
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 70
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDL--WLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ- 301
L + + LV+E++ S+DL ++ + + L K Y +GLAF H
Sbjct: 71 LDVIHTENKLYLVFEFL---SMDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSH 125
Query: 302 -----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMS 337
DFGLAR ++ TL Y PE +
Sbjct: 126 RVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYY 184
Query: 338 TTRGDVYSFGVILLELVTAK 357
+T D++S G I E+VT +
Sbjct: 185 STAVDIWSLGCIFAEMVTRR 204
>pdb|3A60|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A60|B Chain B, Crystal Structure Of Unphosphorylated P70s6k1 (Form I)
pdb|3A61|A Chain A, Crystal Structure Of Unphosphorylated P70s6k1 (Form Ii)
Length = 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 48/239 (20%)
Query: 163 SSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKAT----LPDGKTVAVKKFSQA 218
+S ++GP +I F+ L+ +L GG+G V++ GK A+K +A
Sbjct: 4 ETSVNRGPEKIRPECFE-------LLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA 56
Query: 219 ------KTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN 272
K H + AE L +VKH +V L+ + L+ EY+ G L + L
Sbjct: 57 MIVRNAKDTAHTK--AERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLER 114
Query: 273 ATGSHEVLDRAKRYKIACSSARGLAFLHQ------------------------DFGLARL 308
E D A Y S A L LHQ DFGL +
Sbjct: 115 EGIFME--DTACFYLAEISMA--LGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170
Query: 309 ISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEK 367
S + V+ GT+ Y+ PE D +S G ++ +++T P E ++K
Sbjct: 171 -SIHDGTVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK 228
>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
pdb|4EON|C Chain C, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human
Cyclin A3 Complex With The Inhibitor Ro3306
Length = 300
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 85/200 (42%), Gaps = 36/200 (18%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 68
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDL--WLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ- 301
L + + LV+E++ S+DL ++ + + L K Y +GLAF H
Sbjct: 69 LDVIHTENKLYLVFEFL---SMDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSH 123
Query: 302 -----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMS 337
DFGLAR ++ TL Y PE +
Sbjct: 124 RVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYY 182
Query: 338 TTRGDVYSFGVILLELVTAK 357
+T D++S G I E+VT +
Sbjct: 183 STAVDIWSLGCIFAEMVTRR 202
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 84/199 (42%), Gaps = 35/199 (17%)
Query: 193 DGGFGTVYKA-TLPDGKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYCS 249
+G +GTV+KA + VA+K+ +A E+ L ++KH+N+V L
Sbjct: 12 EGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLH 71
Query: 250 FDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAF------LHQD- 302
D++ LV+E+ + L + + G LD +GL F LH+D
Sbjct: 72 SDKKLTLVFEF-CDQDLKKYFDSCNGD---LDPEIVKSFLFQLLKGLGFCHSRNVLHRDL 127
Query: 303 -----------------FGLARLISACETHVSTDIAGTLGYIPPE--YGQSRMSTTRGDV 343
FGLAR S ++ TL Y PP+ +G +++ +T D+
Sbjct: 128 KPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVV-TLWYRPPDVLFG-AKLYSTSIDM 185
Query: 344 YSFGVILLELVTAKEPTGP 362
+S G I EL A P P
Sbjct: 186 WSAGCIFAELANAGRPLFP 204
>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human
Pdk1 Complex 2
Length = 311
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 88/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 39 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 97
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 98 -YFTFQDDEKLYFGLSYAKNGCLLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 156
Query: 302 D------------------FGLARLISACETHV-STDIAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + ++ D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSD 216
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 252
>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
pdb|2IW8|C Chain C, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v-
H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor
Length = 302
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 70
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E+ V+ L ++ + + L K Y +GLAF H
Sbjct: 71 LDVIHTENKLYLVFEH-VDQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 127
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 128 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 186
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 187 AVDIWSLGCIFAEMVTRR 204
>pdb|3A62|A Chain A, Crystal Structure Of Phosphorylated P70s6k1
Length = 327
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 48/239 (20%)
Query: 163 SSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKAT----LPDGKTVAVKKFSQA 218
+S ++GP +I F+ L+ +L GG+G V++ GK A+K +A
Sbjct: 4 ETSVNRGPEKIRPECFE-------LLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA 56
Query: 219 ------KTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN 272
K H + AE L +VKH +V L+ + L+ EY+ G L + L
Sbjct: 57 MIVRNAKDTAHTK--AERNILEEVKHPFIVDLIYAFQTGGKLYLILEYLSGGELFMQLER 114
Query: 273 ATGSHEVLDRAKRYKIACSSARGLAFLHQ------------------------DFGLARL 308
E D A Y S A L LHQ DFGL +
Sbjct: 115 EGIFME--DTACFYLAEISMA--LGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKE 170
Query: 309 ISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEK 367
S + V+ GT+ Y+ PE D +S G ++ +++T P E ++K
Sbjct: 171 -SIHDGTVTHXFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKK 228
>pdb|3QC4|A Chain A, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
pdb|3QC4|B Chain B, Pdk1 In Complex With Dfg-Out Inhibitor Xxx
Length = 314
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 60/250 (24%), Positives = 97/250 (38%), Gaps = 44/250 (17%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 42 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 100
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 101 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 159
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 160 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 219
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKP 400
+++ G I+ +LV P G E+ +FQK+ K + D P ++
Sbjct: 220 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD---FPAAFFPKARD 266
Query: 401 MMLKMLRIAA 410
++ K+L + A
Sbjct: 267 LVEKLLVLDA 276
>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1P|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu2058
pdb|1H1Q|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1Q|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6094
pdb|1H1R|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1R|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6086
pdb|1H1S|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H1S|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With The Inhibitor Nu6102
pdb|1H24|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H24|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH A 9 RESIDUE RECRUITMENT
Peptide From E2f
pdb|1H25|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H25|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From Retinoblastoma-Associated Protein
pdb|1H26|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H26|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P53
pdb|1H27|A Chain A, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H27|C Chain C, Cdk2CYCLIN A IN COMPLEX WITH AN 11-Residue Recruitment
Peptide From P27
pdb|1H28|A Chain A, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|1H28|C Chain C, Cdk2/cyclin A In Complex With An 11-residue Recruitment
Peptide From P107
pdb|2WMA|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMA|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|A Chain A, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
pdb|2WMB|C Chain C, Structural And Thermodynamic Consequences Of Cyclization
Of Peptide Ligands For The Recruitment Site Of Cyclin A
Length = 303
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 12 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 71
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 72 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 128
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 129 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 187
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 188 AVDIWSLGCIFAEMVTRR 205
>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OGU|C Chain C, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed
With A
2-arylamino-4-cyclohexylmethyl-5-nitroso-6-
aminopyrimidine Inhibitor
pdb|1OI9|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OI9|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIU|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
pdb|1OIY|C Chain C, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED
With A 6-Cyclohexylmethyloxy-2-Anilino-Purine Inhibitor
Length = 302
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 70
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 71 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 127
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 128 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 186
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 187 AVDIWSLGCIFAEMVTRR 204
>pdb|3VID|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With
Compound A
Length = 356
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 20/132 (15%)
Query: 302 DFGLARLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVT--AKE 358
DFGLAR I +V D L ++ PE R+ T + DV+SFGV+L E+ + A
Sbjct: 234 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 293
Query: 359 PTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPA 418
G + E+ L ++ + +A D P +M + DC P+
Sbjct: 294 YPGVKIDEEFCRRL-----KEGTRMRAPDYTTP------------EMYQTMLDCWHGEPS 336
Query: 419 TRPTMLHVLKLL 430
RPT +++ L
Sbjct: 337 QRPTFSELVEHL 348
>pdb|3VHE|A Chain A, Crystal Structure Of Human Vegfr2 Kinase Domain With A
Novel Pyrrolopyrimidine Inhibitor
Length = 359
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 302 DFGLARLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
DFGLAR I +V D L ++ PE R+ T + DV+SFGV+L E+ +
Sbjct: 236 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 295
Query: 361 GPEFQEKEGANLVGWVFQKMK---KQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNP 417
P G + +++K + +A D P +M + DC P
Sbjct: 296 YP------GVKIDEEFCRRLKEGTRMRAPDYTTP------------EMYQTMLDCWHGEP 337
Query: 418 ATRPTMLHVLKLL 430
+ RPT +++ L
Sbjct: 338 SQRPTFSELVEHL 350
>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
pdb|4EOS|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 69
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 70 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 126
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 127 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 185
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 186 AVDIWSLGCIFAEMVTRR 203
>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JST|C Chain C, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A
pdb|1JSU|A Chain A, P27(Kip1)CYCLIN ACDK2 COMPLEX
pdb|1FQ1|B Chain B, Crystal Structure Of Kinase Associated Phosphatase (Kap)
In Complex With Phospho-Cdk2
pdb|2C6T|A Chain A, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2C6T|C Chain C, Crystal Structure Of The Human Cdk2 Complexed With The
Triazolopyrimidine Inhibitor
pdb|2CJM|A Chain A, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2CJM|C Chain C, Mechanism Of Cdk Inhibition By Active Site
Phosphorylation: Cdk2 Y15p T160p In Complex With Cyclin
A Structure
pdb|2UZB|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZB|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZD|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZE|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|A Chain A, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|2UZL|C Chain C, Crystal Structure Of Human Cdk2 Complexed With A
Thiazolidinone Inhibitor
pdb|4II5|A Chain A, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
pdb|4II5|C Chain C, Structure Of Pcdk2/cyclina Bound To Adp And 1 Magnesium
Ion
Length = 298
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 67 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 123
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 182
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 183 AVDIWSLGCIFAEMVTRR 200
>pdb|2VZ6|A Chain A, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
pdb|2VZ6|B Chain B, Structure Of Human Calcium Calmodulin Dependent Protein
Kinase Type Ii Alpha (Camk2a) In Complex With Indirubin
E804
Length = 313
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 71/281 (25%), Positives = 109/281 (38%), Gaps = 52/281 (18%)
Query: 176 SMFQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAK--TQGHRQFTAEMET 232
SM+Q L + L G F V + + G+ A K + K + H++ E
Sbjct: 22 SMYQ-------LFEELGKGAFSVVRRCVKVLAGQEYAAKIINTKKLSARDHQKLEREARI 74
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSL--DLWLR----NATGSH---EVL--- 280
+KH N+V L S + L+++ + G L D+ R A SH ++L
Sbjct: 75 CRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFEDIVAREYYSEADASHCIQQILEAV 134
Query: 281 -----------DRAKRYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPP 329
D + S +G A DFGLA + E AGT GY+ P
Sbjct: 135 LHCHQMGVVHRDLKPENLLLASKLKGAAVKLADFGLAIEVEG-EQQAWFGFAGTPGYLSP 193
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVL 389
E + D+++ GVIL L+ P E Q + ++Q++K A D
Sbjct: 194 EVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHR--------LYQQIKA-GAYDFP 244
Query: 390 DPT--VLNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
P + +K ++ KML I NP+ R T LK
Sbjct: 245 SPEWDTVTPEAKDLINKMLTI-------NPSKRITAAEALK 278
>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
pdb|4EOP|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With The Inhibitor Ro3306
Length = 300
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 69
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 70 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 126
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 127 LHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 185
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 186 AVDIWSLGCIFAEMVTRR 203
>pdb|1Y6A|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
pdb|1Y6B|A Chain A, Crystal Structure Of Vegfr2 In Complex With A
2-Anilino-5-Aryl-Oxazole Inhibitor
Length = 366
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 302 DFGLARLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
DFGLAR I +V D L ++ PE R+ T + DV+SFGV+L E+ +
Sbjct: 241 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 300
Query: 361 GPEFQEKEGANLVGWVFQKMK---KQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNP 417
P G + +++K + +A D P +M + DC P
Sbjct: 301 YP------GVKIDEEFCRRLKEGTRMRAPDYTTP------------EMYQTMLDCWHGEP 342
Query: 418 ATRPTMLHVLKLL 430
+ RPT +++ L
Sbjct: 343 SQRPTFSELVEHL 355
>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
pdb|4EOO|C Chain C, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3
Complex With Atp
Length = 299
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 68
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 69 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 125
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 126 LHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 184
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 185 AVDIWSLGCIFAEMVTRR 202
>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1QMZ|C Chain C, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex
pdb|1GY3|A Chain A, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1GY3|C Chain C, Pcdk2CYCLIN A IN COMPLEX WITH MGADP, NITRATE AND PEPTIDE
SUBSTRATE
pdb|1P5E|A Chain A, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|1P5E|C Chain C, The Strucure Of Phospho-Cdk2CYCLIN A IN COMPLEX WITH THE
Inhibitor 4,5,6,7-Tetrabromobenzotriazole (Tbs)
pdb|2CCH|A Chain A, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCH|C Chain C, The Crystal Structure Of Cdk2 Cyclin A In Complex With A
Substrate Peptide Derived From Cdc Modified With A
Gamma- Linked Atp Analogue
pdb|2CCI|A Chain A, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2CCI|C Chain C, Crystal Structure Of Phospho-Cdk2 Cyclin A In Complex With
A Peptide Containing Both The Substrate And Recruitment
Sites Of Cdc6
pdb|2G9X|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|2G9X|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
COMPLEX WITH THE Inhibitor Nu6271
pdb|3DDP|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDP|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Cr8
pdb|3DDQ|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DDQ|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Roscovitine
pdb|3DOG|A Chain A, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
pdb|3DOG|C Chain C, Structure Of Thr 160 Phosphorylated Cdk2CYCLIN A IN
Complex With The Inhibitor N-&-N1
Length = 299
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHT|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 3
pdb|3BHU|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHU|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
WITH THE Inhibitor Meriolin 5
pdb|3BHV|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3BHV|C Chain C, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX
With The Inhibitor Variolin B
pdb|3MY5|A Chain A, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3MY5|C Chain C, Cdk2CYCLINA IN COMPLEX WITH DRB
pdb|3TNW|A Chain A, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|3TNW|C Chain C, Structure Of Cdk2CYCLIN A IN COMPLEX WITH CAN508
pdb|4BCO|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCO|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 300
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 68
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 69 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 125
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 126 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 184
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 185 AVDIWSLGCIFAEMVTRR 202
>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
pdb|4EOQ|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With Atp
Length = 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 11 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 70
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 71 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 127
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 128 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 186
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 187 AVDIWSLGCIFAEMVTRR 204
>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCQ|C Chain C, Structure Of Cdk2 In Complex With Cyclin A And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 301
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 10 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 69
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 70 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 126
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 127 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 185
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 186 AVDIWSLGCIFAEMVTRR 203
>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis
Length = 394
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 47/215 (21%)
Query: 179 QQPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKH 238
+Q + T ++ +G FG V++A L + VA+KK Q K +R E++ + VKH
Sbjct: 36 EQREIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNR----ELQIMRIVKH 91
Query: 239 QNLVLLLGYCSFDEEKL------LVYEYM---VNGSLDLWLRNATGSHEVLDRAKRYKIA 289
N+V L + + +K LV EY+ V + + + +L + Y++
Sbjct: 92 PNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQL- 150
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+++ A E +VS +
Sbjct: 151 ---LRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSX--ICSR 205
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELVTAK 357
Y PE +G + TT D++S G ++ EL+ +
Sbjct: 206 YYRAPELIFGATNY-TTNIDIWSTGCVMAELMQGQ 239
>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1E9H|C Chain C, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With
The Inhibitor Indirubin-5-Sulphonate Bound
pdb|1PKD|A Chain A, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
pdb|1PKD|C Chain C, The Crystal Structure Of Ucn-01 In Complex With Phospho-
Cdk2CYCLIN A
Length = 297
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|3VHK|A Chain A, Crystal Structure Of The Vegfr2 Kinase Domain In Complex
With A Back Pocket Binder
Length = 368
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 22/133 (16%)
Query: 302 DFGLARLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
DFGLAR I +V D L ++ PE R+ T + DV+SFGV+L E+ +
Sbjct: 243 DFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASP 302
Query: 361 GPEFQEKEGANLVGWVFQKMK---KQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNP 417
P G + +++K + +A D P +M + DC P
Sbjct: 303 YP------GVKIDEEFCRRLKEGTRMRAPDYTTP------------EMYQTMLDCWHGEP 344
Query: 418 ATRPTMLHVLKLL 430
+ RPT +++ L
Sbjct: 345 SQRPTFSELVEHL 357
>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E
pdb|4EOR|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
pdb|4EOR|C Chain C, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex
With The Inhibitor Nu6102
Length = 298
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|3IOP|A Chain A, Pdk-1 In Complex With The Inhibitor Compound-8i
pdb|3QCQ|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-(3-
Amino-1h-Indazol-6-Yl)-N4-Ethyl-2,4-Pyrimidinediamine
pdb|3QCS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-[2-
Amino-6-(4-Morpholinyl)-4-Pyrimidinyl]-1h-Indazol-3-
Amine
pdb|3QCX|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 6-{2-
Amino-6-[(3r)-3-Methyl-4-Morpholinyl]-4-Pyrimidinyl}-1h-
Indazol-3- Amine
pdb|3QCY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 4-[2-
Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-N-
Phenyl-2- Morpholinecarboxamide
pdb|3QD0|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With (2r,5s)-
1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-Pyrimidinyl]-6-
Methyl-N- Phenyl-3-Piperidinecarboxamide
pdb|3QD3|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1- Dimethylethyl
{(3r,6s)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-6-Methyl-3-Piperidinyl}carbamate
pdb|3QD4|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) Kinase Domain
With 1,1-
Dimethylethyl{(3r,
5r)-1-[2-Amino-6-(3-Amino-1h-Indazol-6-Yl)-4-
Pyrimidinyl]-5-Methyl-3-Piperidinyl}carbamate
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 40 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 98
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 99 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 157
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 158 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 217
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 218 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 253
>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin
Length = 306
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 91/246 (36%), Gaps = 52/246 (21%)
Query: 194 GGFGTVYKATLPDG------KTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGY 247
G +GTVYKA P K+V V + + A + L +H N+V L+
Sbjct: 15 GAYGTVYKARDPHSGHFVALKSVRVPNGEEGLPISTVREVALLRRLEAFEHPNVVRLMDV 74
Query: 248 CS---FDEE--KLLVYEYMVNGSLDLWLRNAT----GSHEVLDRAKRYKIACSSARGLAF 298
C+ D E LV+E+ V+ L +L A + + D +++ RGL F
Sbjct: 75 CATSRTDREIKVTLVFEH-VDQDLRTYLDKAPPPGLPAETIKDLMRQF------LRGLDF 127
Query: 299 LH------------------------QDFGLARLISACETHVSTDIAGTLGYIPPEYGQS 334
LH DFGLAR+ S + TL Y PE
Sbjct: 128 LHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSY--QMALFPVVVTLWYRAPEVLLQ 185
Query: 335 RMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVL 394
T D++S G I E+ K P F A+ +G +F + DD L
Sbjct: 186 STYATPVDMWSVGCIFAEMFRRK----PLFCGNSEADQLGKIFDLIGLPPEDDWPRDVSL 241
Query: 395 NAGSKP 400
G+ P
Sbjct: 242 PRGAFP 247
>pdb|3RWP|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 39 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 97
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 98 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 156
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 252
>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHR|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
pdb|3QHW|C Chain C, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic
Length = 298
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 9 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 68
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 69 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 125
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 126 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 184
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 185 AVDIWSLGCIFAEMVTRR 202
>pdb|2R7B|A Chain A, Crystal Structure Of The Phosphoinositide-Dependent
Kinase- 1 (Pdk-1)catalytic Domain Bound To A
Dibenzonaphthyridine Inhibitor
pdb|3ION|A Chain A, Pdk1 In Complex With Compound 8h
Length = 312
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 40 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 98
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 99 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 157
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 158 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSD 217
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 218 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 253
>pdb|3SC1|A Chain A, Novel Isoquinolone Pdk1 Inhibitors Discovered Through
Fragment-Based Lead Discovery
pdb|3RWQ|A Chain A, Discovery Of A Novel, Potent And Selective Inhibitor Of 3-
Phosphoinositide Dependent Kinase (Pdk1)
Length = 311
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 39 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 97
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 98 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 156
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 252
>pdb|2XCH|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 37 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 95
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 96 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 154
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 214
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 250
>pdb|1UU3|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ly333531
pdb|1UU7|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-2
pdb|1UU8|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-1
pdb|1OKY|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Staurosporine
pdb|1OKZ|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Ucn-01
Length = 310
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 37 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 95
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 96 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 154
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 214
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 250
>pdb|1H1W|A Chain A, High Resolution Crystal Structure Of The Human Pdk1
Catalytic Domain
pdb|1UVR|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-8
Length = 289
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 17 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 75
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 76 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 134
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 135 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 194
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 195 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 230
>pdb|3H9O|A Chain A, Phosphoinositide-Dependent Protein Kinase 1 (Pdk-1) In
Complex With Compound 9
Length = 311
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 39 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 97
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 98 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 156
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 217 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 252
>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B
Length = 289
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|1Z5M|A Chain A, Crystal Structure Of
N1-[3-[[5-bromo-2-[[3-[(1-pyrrolidinylcarbonyl)
Amino]phenyl]amino]-4-pyrimidinyl]amino]propyl]-2,2-
Dimethylpropanediamide Complexed With Human Pdk1
pdb|2PE0|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
5-Hydroxy-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-1,
3-Dihydro- Indol-2-One Complex
pdb|2PE1|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
{2-Oxo-3-[1-(1h-Pyrrol-2-Yl)-Eth-(Z)-Ylidene]-2,
3-Dihydro-1h- Indol-5-Yl}-Urea {bx-517} Complex
pdb|2PE2|A Chain A, Crystal Structure Of Human Phosphoinositide-Dependent
Protein Kinase 1 (Pdk1)
3-{5-[2-Oxo-5-Ureido-1,
2-Dihydro-Indol-(3z)-Ylidenemethyl]-1h-
Pyrrol-3-Yl}-N-(2-Piperidin-1-Yl-Ethyl)-Benzamide
Complex
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 14 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 72
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 73 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 131
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 132 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 191
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 192 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 227
>pdb|2BIY|A Chain A, Structure Of Pdk1-S241a Mutant Kinase Domain
Length = 310
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 37 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 95
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 96 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 154
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANAFVGTAQYVSPELLTEKSACKSSD 214
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 250
>pdb|3FME|A Chain A, Crystal Structure Of Human Mitogen-Activated Protein
Kinase Kinase 6 (Mek6) Activated Mutant (S207d, T211d)
Length = 290
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/272 (20%), Positives = 105/272 (38%), Gaps = 48/272 (17%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKF-SQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G +G V K +P G+ +AVK+ + +Q ++ +++ + + F
Sbjct: 18 GAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR 77
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLAR---- 307
E + + +++ SLD + + + + KIA S + L LH +
Sbjct: 78 EGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVK 137
Query: 308 ----LISA------CE--------THVSTDI-AGTLGYIPPEYGQSRMS----TTRGDVY 344
LI+A C+ V+ DI AG Y+ PE ++ + + D++
Sbjct: 138 PSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELNQKGYSVKSDIW 197
Query: 345 SFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK 404
S G+ ++EL + P + G FQ++K+ V++ + +
Sbjct: 198 SLGITMIELAILRFPY----------DSWGTPFQQLKQ-----VVEEPSPQLPADKFSAE 242
Query: 405 MLRIAADCVADNPATRPT----MLHVLKLLHE 432
+ + C+ N RPT M H LHE
Sbjct: 243 FVDFTSQCLKKNSKERPTYPELMQHPFFTLHE 274
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/280 (21%), Positives = 98/280 (35%), Gaps = 54/280 (19%)
Query: 185 LTLVDILEDGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGKVKHQNLV 242
L L + + G FG V+ L D VAVK + + +F E L + H N+V
Sbjct: 116 LVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIV 175
Query: 243 LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ- 301
L+G C+ + +V E + G +LR V ++ +A G+ +L
Sbjct: 176 RLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRV---KTLLQMVGDAAAGMEYLESK 232
Query: 302 -----------------------DFGLARLISACETHVSTDIAGTLGYIP-----PEYGQ 333
DFG++R E +G L +P PE
Sbjct: 233 CCIHRDLAARNCLVTEKNVLKISDFGMSRE----EADGVXAASGGLRQVPVKWTAPEALN 288
Query: 334 SRMSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTV 393
++ DV+SFG++L E + P ++ V +K + ++ V
Sbjct: 289 YGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFV----EKGGRLPCPELCPDAV 344
Query: 394 LNAGSKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
R+ C A P RP+ + + L I
Sbjct: 345 ------------FRLMEQCWAYEPGQRPSFSTIYQELQSI 372
>pdb|2C30|A Chain A, Crystal Structure Of The Human P21-Activated Kinase 6
Length = 321
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 88/231 (38%), Gaps = 37/231 (16%)
Query: 159 NLYLSS-----SRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKATLP-DGKTVAV 212
NLY S + K LR+ + LL + V I E G G V A G+ VAV
Sbjct: 17 NLYFQSGVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGE-GSTGIVCLAREKHSGRQVAV 75
Query: 213 KKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN 272
K K Q E+ + +H N+V + EE ++ E++ G+L
Sbjct: 76 KMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYLVGEELWVLMEFLQGGAL-----T 130
Query: 273 ATGSHEVLDRAKRYKIACSSARGLAFLH------------------------QDFGLARL 308
S L+ + + + + LA+LH DFG
Sbjct: 131 DIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQ 190
Query: 309 ISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
IS + + GT ++ PE + T D++S G++++E+V + P
Sbjct: 191 ISK-DVPKRKXLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPP 240
>pdb|1UU9|A Chain A, Structure Of Human Pdk1 Kinase Domain In Complex With
Bim-3
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 16 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 74
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 75 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 133
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 134 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 193
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 194 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 229
>pdb|3NUN|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Lead
Compound
Length = 292
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 21 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 79
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 80 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 138
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 139 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 198
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 199 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 234
>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-dependent Kinase Inhibitors Identified Through
Structure-based Hybridisation
Length = 299
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 84/196 (42%), Gaps = 28/196 (14%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEY--------------------MVNGSLDLWLRNAT--GSHEVLDR 282
L + + LV+E+ ++ L L+ + SH VL R
Sbjct: 68 LDVIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPLIKSYLFQLLQGLSFCHSHRVLHR 127
Query: 283 AKRYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRG 341
+ + + G A DFGLAR + ++ TL Y PE + +T
Sbjct: 128 DLKPQNLLINTEG-AIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYSTAV 185
Query: 342 DVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 186 DIWSLGCIFAEMVTRR 201
>pdb|4FVP|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain (Apo
Form)
pdb|4FVQ|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain
(Mg-Atp-Bound Form)
Length = 289
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 192 EDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
E G +G +++ V +K +A F + K+ H++LVL G C
Sbjct: 31 EVGDYGQLHETE------VLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG 84
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
+E +LV E++ GSLD +L+ +L + ++A A + FL ++
Sbjct: 85 DENILVQEFVKFGSLDTYLKKNKNCINIL---WKLEVAKQLAAAMHFLEEN 132
>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
pdb|4I3Z|C Chain C, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM
IONS
Length = 296
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+KK +T+G E+ L ++ H N+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 67 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 123
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR ++ TL Y PE + +T
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVV-TLWYRAPEILLGCKYYST 182
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 183 AVDIWSLGCIFAEMVTRR 200
>pdb|3NUS|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment8
pdb|3NUU|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment11
pdb|3NUY|A Chain A, Phosphoinositide-Dependent Kinase-1 (Pdk1) With Fragment17
Length = 286
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 15 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 73
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 74 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 132
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 133 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 192
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 193 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 228
>pdb|3NAX|A Chain A, Pdk1 In Complex With Inhibitor Mp7
Length = 311
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 36 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 94
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 95 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 153
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 154 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSD 213
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 214 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 249
>pdb|3NAY|A Chain A, Pdk1 In Complex With Inhibitor Mp6
pdb|3NAY|B Chain B, Pdk1 In Complex With Inhibitor Mp6
Length = 311
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 87/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 36 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 94
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 95 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 153
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 154 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 213
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 214 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 249
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/276 (20%), Positives = 98/276 (35%), Gaps = 46/276 (16%)
Query: 185 LTLVDILEDGGFGTVYKATL-PDGKTVAVKKFSQAKTQGHR-QFTAEMETLGKVKHQNLV 242
L L + + G FG V+ L D VAVK + + +F E L + H N+V
Sbjct: 116 LVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIV 175
Query: 243 LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
L+G C+ + +V E + G +LR V ++ +A G+ +L
Sbjct: 176 RLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARLRV---KTLLQMVGDAAAGMEYLESK 232
Query: 303 FGLARLISACETHVSTD--------------------IAGTLGYIP-----PEYGQSRMS 337
+ R ++A V+ +G L +P PE
Sbjct: 233 CCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRY 292
Query: 338 TTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAG 397
++ DV+SFG++L E + P ++ V +K + ++ V
Sbjct: 293 SSESDVWSFGILLWETFSLGASPYPNLSNQQTREFV----EKGGRLPCPELCPDAV---- 344
Query: 398 SKPMMLKMLRIAADCVADNPATRPTMLHVLKLLHEI 433
R+ C A P RP+ + + L I
Sbjct: 345 --------FRLMEQCWAYEPGQRPSFSTIYQELQSI 372
>pdb|3VN9|A Chain A, Rifined Crystal Structure Of Non-Phosphorylated Map2k6 In
A Putative Auto-Inhibition State
Length = 340
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/272 (19%), Positives = 104/272 (38%), Gaps = 48/272 (17%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKF-SQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
G +G V K +P G+ +AVK+ + +Q ++ +++ + + F
Sbjct: 62 GAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFR 121
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLAR---- 307
E + + +++ SLD + + + + KIA S + L LH +
Sbjct: 122 EGDVWICMELMDTSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVK 181
Query: 308 ----LISA------CETHVS---------TDIAGTLGYIPPEYGQSRMS----TTRGDVY 344
LI+A C+ +S T AG Y+ PE ++ + + D++
Sbjct: 182 PSNVLINALGQVKMCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELNQKGYSVKSDIW 241
Query: 345 SFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLK 404
S G+ ++EL + P + G FQ++K+ V++ + +
Sbjct: 242 SLGITMIELAILRFPY----------DSWGTPFQQLKQ-----VVEEPSPQLPADKFSAE 286
Query: 405 MLRIAADCVADNPATRPT----MLHVLKLLHE 432
+ + C+ N RPT M H LHE
Sbjct: 287 FVDFTSQCLKKNSKERPTYPELMQHPFFTLHE 318
>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia
pdb|3GC0|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia In
Complex With Amp
Length = 329
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 94/232 (40%), Gaps = 45/232 (19%)
Query: 163 SSSRSKGPLRINISMFQQPLLKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQ 221
S S S P +I +++ + L +G +G VYKA +TVA+K+ +
Sbjct: 21 SMSVSAAPSATSIDRYRR-------ITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEE 73
Query: 222 GHRQFTA--EMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEV 279
TA E+ L +++H+N++ L + L++EY N +N S V
Sbjct: 74 EGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHLIFEYAENDLKKYMDKNPDVSMRV 133
Query: 280 LDRAKRYKIA-----CSSARGLAFLHQ-----------------------DFGLARLISA 311
+ ++ Y++ C S R LH+ DFGLAR
Sbjct: 134 I-KSFLYQLINGVNFCHSRRC---LHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGI 189
Query: 312 CETHVSTDIAGTLGYIPPEY-GQSRMSTTRGDVYSFGVILLELVTAKEPTGP 362
+ +I TL Y PPE SR +T D++S I E++ K P P
Sbjct: 190 PIRQFTHEII-TLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLM-KTPLFP 239
>pdb|4FVR|A Chain A, Crystal Structure Of The Jak2 Pseudokinase Domain Mutant
V617f (Mg- Atp-Bound Form)
Length = 289
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 51/111 (45%), Gaps = 9/111 (8%)
Query: 192 EDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFD 251
E G +G +++ V +K +A F + K+ H++LVL G C
Sbjct: 31 EVGDYGQLHETE------VLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCFCG 84
Query: 252 EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
+E +LV E++ GSLD +L+ +L + ++A A + FL ++
Sbjct: 85 DENILVQEFVKFGSLDTYLKKNKNCINIL---WKLEVAKQLAWAMHFLEEN 132
>pdb|3LXN|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
pdb|3LXP|A Chain A, Structural And Thermodynamic Characterization Of The Tyk2
And Jak3 Kinase Domains In Complex With Cp-690550 And
Cmp-6
Length = 318
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 76/181 (41%), Gaps = 40/181 (22%)
Query: 207 GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGYC--SFDEEKLLVYEYMVN 263
G+ VAVK HR + E++ L + H++++ G C + LV EY+
Sbjct: 60 GEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQLVMEYVPL 119
Query: 264 GSLDLWL-RNATGSHEVLDRAKRYKIACSSARGLAFLHQ--------------------- 301
GSL +L R++ G ++L A++ G+A+LH
Sbjct: 120 GSLRDYLPRHSIGLAQLLLFAQQI------CEGMAYLHAQHYIHRDLAARNVLLDNDRLV 173
Query: 302 ---DFGLARLISACETH----VSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELV 354
DFGLA+ + E H V D + + PE + DV+SFGV L EL+
Sbjct: 174 KIGDFGLAKAVP--EGHEXYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELL 231
Query: 355 T 355
T
Sbjct: 232 T 232
>pdb|4A07|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps171 Bound To The Pif-Pocket
pdb|4AW0|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps182 Bound To The Pif-Pocket
Length = 311
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 39 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 97
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 98 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 156
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSAXKSSD 216
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P F+ A G +F K+ K + D
Sbjct: 217 LWALGCIIYQLVAGL----PPFR----AGNEGLIFAKIIKLEYD 252
>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex
With Flavonoid Glycoside Sl0101
Length = 304
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 184 KLTLVDILEDGGFGTVY---KATLPDGKTV-AVKKFSQAKTQGHRQFTAEME--TLGKVK 237
+ L+ +L G FG V+ K + D + + A+K +A + + +ME L +V
Sbjct: 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN 84
Query: 238 HQNLVLLLGYCSFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRY----KIACSS 292
H ++ L Y E KL L+ +++ G DL+ R + + K Y +A
Sbjct: 85 HP-FIVKLHYAFQTEGKLYLILDFLRGG--DLFTRLSKEVMFTEEDVKFYLAELALALDH 141
Query: 293 ARGLAFLHQDFGLARLISACETHVS-TDIA----------------GTLGYIPPEYGQSR 335
L +++D ++ E H+ TD GT+ Y+ PE R
Sbjct: 142 LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 201
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
T D +SFGV++ E++T P
Sbjct: 202 GHTQSADWWSFGVLMFEMLTGTLP 225
>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin
pdb|4GUE|A Chain A, Structure Of N-terminal Kinase Domain Of Rsk2 With
Flavonoid Glycoside Quercitrin
Length = 305
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 184 KLTLVDILEDGGFGTVY---KATLPDGKTV-AVKKFSQAKTQGHRQFTAEME--TLGKVK 237
+ L+ +L G FG V+ K + D + + A+K +A + + +ME L +V
Sbjct: 26 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN 85
Query: 238 HQNLVLLLGYCSFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRY----KIACSS 292
H ++ L Y E KL L+ +++ G DL+ R + + K Y +A
Sbjct: 86 HP-FIVKLHYAFQTEGKLYLILDFLRGG--DLFTRLSKEVMFTEEDVKFYLAELALALDH 142
Query: 293 ARGLAFLHQDFGLARLISACETHVS-TDIA----------------GTLGYIPPEYGQSR 335
L +++D ++ E H+ TD GT+ Y+ PE R
Sbjct: 143 LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 202
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
T D +SFGV++ E++T P
Sbjct: 203 GHTQSADWWSFGVLMFEMLTGTLP 226
>pdb|3HRC|A Chain A, Crystal Structure Of A Mutant Of Human Pdk1 Kinase Domain
In Complex With Atp
pdb|3HRF|A Chain A, Crystal Structure Of Human Pdk1 Kinase Domain In Complex
With An Allosteric Activator Bound To The Pif-Pocket
pdb|3RCJ|A Chain A, Rapid Preparation Of Triazolyl Substituted Nh-Heterocyclic
Kinase Inhibitors Via One-Pot Sonogashira Coupling
Tms-Deprotection Cuaac Sequence
pdb|4A06|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Activator Ps114 Bound To The Pif-Pocket
pdb|4AW1|A Chain A, Human Pdk1 Kinase Domain In Complex With Allosteric
Compound Ps210 Bound To The Pif-Pocket
Length = 311
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/224 (25%), Positives = 87/224 (38%), Gaps = 37/224 (16%)
Query: 190 ILEDGGFGTVYKA-TLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F TV A L + A+K + K T E + + ++ H V L
Sbjct: 39 ILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 97
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 98 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 156
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 157 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 216
Query: 343 VYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P F+ A G +F K+ K + D
Sbjct: 217 LWALGCIIYQLVAGL----PPFR----AGNEGLIFAKIIKLEYD 252
>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of
Cyclin-Dependent Kinase Inhibitors Identified Through
Structure-Based Hybridisation
Length = 299
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+ K +T+G E+ L ++ H N+V L
Sbjct: 8 VEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 67
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 68 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 124
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 125 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 183
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 184 AVDIWSLGCIFAEMVTRR 201
>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino
Pyrimidine Cdk4 Inhibitor
Length = 298
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 83/198 (41%), Gaps = 32/198 (16%)
Query: 188 VDILEDGGFGTVYKATLP-DGKTVAVKKFS-QAKTQG-HRQFTAEMETLGKVKHQNLVLL 244
V+ + +G +G VYKA G+ VA+ K +T+G E+ L ++ H N+V L
Sbjct: 7 VEKIGEGTYGVVYKARNKLTGEVVALXKIRLDTETEGVPSTAIREISLLKELNHPNIVKL 66
Query: 245 LGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
L + + LV+E++ + L ++ + + L K Y +GLAF H
Sbjct: 67 LDVIHTENKLYLVFEFL-HQDLKKFMDASALTGIPLPLIKSYLFQL--LQGLAFCHSHRV 123
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
DFGLAR + ++ TL Y PE + +T
Sbjct: 124 LHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVV-TLWYRAPEILLGCKYYST 182
Query: 340 RGDVYSFGVILLELVTAK 357
D++S G I E+VT +
Sbjct: 183 AVDIWSLGCIFAEMVTRR 200
>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex
pdb|3F88|B Chain B, Glycogen Synthase Kinase 3beta Inhibitor Complex
Length = 349
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K +VY +N LD RAK+ Y++ R L
Sbjct: 83 YSSGEKKDVVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 135
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 193
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 194 IFGATDY-TSSIDVWSAGCVLAELL 217
>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N-
Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2
Length = 325
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 31/204 (15%)
Query: 184 KLTLVDILEDGGFGTVY---KATLPDGKTV-AVKKFSQAKTQGHRQFTAEME--TLGKVK 237
+ L+ +L G FG V+ K + D + + A+K +A + + +ME L +V
Sbjct: 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVN 84
Query: 238 HQNLVLLLGYCSFDEEKL-LVYEYMVNGSLDLWLRNATGSHEVLDRAKRY----KIACSS 292
H ++ L Y E KL L+ +++ G DL+ R + + K Y +A
Sbjct: 85 HP-FIVKLHYAFQTEGKLYLILDFLRGG--DLFTRLSKEVMFTEEDVKFYLAELALALDH 141
Query: 293 ARGLAFLHQDFGLARLISACETHVS-TDIA----------------GTLGYIPPEYGQSR 335
L +++D ++ E H+ TD GT+ Y+ PE R
Sbjct: 142 LHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRR 201
Query: 336 MSTTRGDVYSFGVILLELVTAKEP 359
T D +SFGV++ E++T P
Sbjct: 202 GHTQSADWWSFGVLMFEMLTGTLP 225
>pdb|2XCK|A Chain A, Crystal Structure Of Pdk1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 309
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 86/226 (38%), Gaps = 41/226 (18%)
Query: 190 ILEDGGFGT-VYKATLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQNLVLLL 245
IL +G F T V L + A+K + K T E + + ++ H V L
Sbjct: 37 ILGEGSFSTTVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKL- 95
Query: 246 GYCSF-DEEKLLV-YEYMVNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGLAFLHQ 301
Y +F D+EKL Y NG L ++R E R +I A G +H+
Sbjct: 96 -YFTFQDDEKLYFGLSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHR 154
Query: 302 D------------------FGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGD 342
D FG A+++S + GT Y+ PE + + D
Sbjct: 155 DLKPENILLNEDMHIQITDFGTAKVLSPESKQARANXFVGTAQYVSPELLTEKSACKSSD 214
Query: 343 VYSFGVILLELVTAKEP--TGPEFQEKEGANLVGWVFQKMKKQQAD 386
+++ G I+ +LV P G E+ +FQK+ K + D
Sbjct: 215 LWALGCIIYQLVAGLPPFRAGNEY----------LIFQKIIKLEYD 250
>pdb|3KL8|A Chain A, Camkiintide Inhibitor Complex
pdb|3KL8|C Chain C, Camkiintide Inhibitor Complex
pdb|3KL8|E Chain E, Camkiintide Inhibitor Complex
pdb|3KL8|G Chain G, Camkiintide Inhibitor Complex
pdb|3KL8|I Chain I, Camkiintide Inhibitor Complex
Length = 269
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVIL 350
S A+G A DFGLA I ++ AGT GY+ PE + + D+++ GVIL
Sbjct: 140 SKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVIL 197
Query: 351 LELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGSKPMMLKMLRI 408
L+ P E Q + A + K A D P + +K ++ ML +
Sbjct: 198 YILLVGYPPFWDEDQHRLYAQI---------KAGAYDYPSPEWDTVTPEAKSLIDSMLTV 248
Query: 409 AADCVADNPATRPTMLHVLKL 429
NP R T LK+
Sbjct: 249 -------NPKKRITADQALKV 262
>pdb|2BDW|A Chain A, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
pdb|2BDW|B Chain B, Crystal Structure Of The Auto-Inhibited Kinase Domain Of
CalciumCALMODULIN ACTIVATED KINASE II
Length = 362
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 207 GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKL--LVYEYMVNG 264
K + KK S Q + E K++H N+V L + S EE LV++ + G
Sbjct: 59 AKIINTKKLSARDFQ---KLEREARICRKLQHPNIVRL--HDSIQEESFHYLVFDLVTGG 113
Query: 265 SL--DLWLRN----ATGSH---EVLDRAKRYK--------------IACSSARGLAFLHQ 301
L D+ R A SH ++L+ + S A+G A
Sbjct: 114 ELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLA 173
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
DFGLA I ++ AGT GY+ PE + + D+++ GVIL L+ P
Sbjct: 174 DFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFW 231
Query: 362 PEFQEK 367
E Q +
Sbjct: 232 DEDQHR 237
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 13/126 (10%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
SIPS +++K L L NN++T L + L L LT N + S +L
Sbjct: 18 NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 63 LSHLDLSSNF---FDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRN 119
L HLDLS N+ W + L +L T+L+L N + + LG + HL L+
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSSL---TFLNLLGNPY-----KTLGETSLFSHLTKLQI 127
Query: 120 MLCGKI 125
+ G +
Sbjct: 128 LRVGNM 133
>pdb|3KK8|A Chain A, Camkii Substrate Complex A
Length = 284
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVIL 350
S A+G A DFGLA I ++ AGT GY+ PE + + D+++ GVIL
Sbjct: 140 SKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVIL 197
Query: 351 LELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGSKPMMLKMLRI 408
L+ P E Q + A + K A D P + +K ++ ML +
Sbjct: 198 YILLVGYPPFWDEDQHRLYAQI---------KAGAYDYPSPEWDTVTPEAKSLIDSMLTV 248
Query: 409 AADCVADNPATRPTMLHVLKL 429
NP R T LK+
Sbjct: 249 -------NPKKRITADQALKV 262
>pdb|3KK9|A Chain A, Camkii Substrate Complex B
Length = 282
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 20/141 (14%)
Query: 291 SSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVIL 350
S A+G A DFGLA I ++ AGT GY+ PE + + D+++ GVIL
Sbjct: 139 SKAKGAAVKLADFGLA--IEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVIL 196
Query: 351 LELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPT--VLNAGSKPMMLKMLRI 408
L+ P E Q + A + K A D P + +K ++ ML +
Sbjct: 197 YILLVGYPPFWDEDQHRLYAQI---------KAGAYDYPSPEWDTVTPEAKSLIDSMLTV 247
Query: 409 AADCVADNPATRPTMLHVLKL 429
NP R T LK+
Sbjct: 248 -------NPKKRITADQALKV 261
>pdb|3HNG|A Chain A, Crystal Structure Of Vegfr1 In Complex With
N-(4-chlorophenyl)-2-
((pyridin-4-ylmethyl)amino)benzamide
Length = 360
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 302 DFGLARLISACETHVST-DIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
DFGLAR I +V D L ++ PE ++ +T+ DV+S+GV+L E+ +
Sbjct: 242 DFGLARDIYKNPDYVRKGDTRLPLKWMAPESIFDKIYSTKSDVWSYGVLLWEIFSLGGSP 301
Query: 361 GPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATR 420
P Q E + + + M + +A + P + +I DC +P R
Sbjct: 302 YPGVQMDE--DFCSRLREGM-RMRAPEYSTPEI------------YQIMLDCWHRDPKER 346
Query: 421 PTMLHVLKLLHEIV 434
P +++ L +++
Sbjct: 347 PRFAELVEKLGDLL 360
>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With
6-Bromoindirubin-3'-Oxime
Length = 350
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 83 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 135
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSRYYRAPEL 193
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 194 IFGATDY-TSSIDVWSAGCVLAELL 217
>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta.
pdb|1H8F|B Chain B, Glycogen Synthase Kinase 3 Beta
Length = 352
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 83 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 135
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSRYYRAPEL 193
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 194 IFGATDY-TSSIDVWSAGCVLAELL 217
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 62/141 (43%), Gaps = 15/141 (10%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
SIPS +++K L L NN++T L + L L LT N + S +L
Sbjct: 44 NSIPSGLTEAVK--SLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 101
Query: 63 LSHLDLSSNF---FDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRN 119
L HLDLS N+ W + L +L T+L+L N + + LG + HL L+
Sbjct: 102 LEHLDLSYNYLSNLSSSWFKPLSSL---TFLNLLGNPY-----KTLGETSLFSHLTKLQI 153
Query: 120 MLCGKIP--EKICKSRLEGLV 138
+ G + KI + GL
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLT 174
>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide
Length = 350
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 85/199 (42%), Gaps = 42/199 (21%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYC 248
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQGKAFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 249 SFDEEKL------LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ- 301
EK LV +Y V ++ R+ + + + L R LA++H
Sbjct: 83 YSSGEKKDEVYLNLVLDY-VPATVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF 141
Query: 302 ------------------------DFGLARLISACETHVSTDIAGTLGYIPPE--YGQSR 335
DFG A+ + E +VS + Y PE +G +
Sbjct: 142 GICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPELIFGATD 199
Query: 336 MSTTRGDVYSFGVILLELV 354
T+ DV+S G +L EL+
Sbjct: 200 Y-TSSIDVWSAGCVLAELL 217
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 86/197 (43%), Gaps = 32/197 (16%)
Query: 188 VDILEDGGFGTVYK--ATLPDGKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVL 243
+D L +G + TVYK + L D VA+K+ +G TA E+ L +KH N+V
Sbjct: 7 LDKLGEGTYATVYKGKSKLTDN-LVALKEIRLEHEEG-APCTAIREVSLLKDLKHANIVT 64
Query: 244 LLGYCSFDEEKLLVYEY-----------------MVNGSLDLW--LRNATGSH--EVLDR 282
L ++ LV+EY M N L L+ LR H +VL R
Sbjct: 65 LHDIIHTEKSLTLVFEYLDKDLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHR 124
Query: 283 AKRYKIACSSARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEY--GQSRMSTTR 340
+ + + RG L DFGLAR S ++ TL Y PP+ G + S T+
Sbjct: 125 DLKPQNLLINERGELKL-ADFGLARAKSIPTKTYDNEVV-TLWYRPPDILLGSTDYS-TQ 181
Query: 341 GDVYSFGVILLELVTAK 357
D++ G I E+ T +
Sbjct: 182 IDMWGVGCIFYEMATGR 198
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
LTG P+ F + +Q L LG N++ + L L LNL N+ S +P S +L
Sbjct: 66 LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125
Query: 61 KGLSHLDLSSNFFD 74
L+ L+L+SN F+
Sbjct: 126 NSLTSLNLASNPFN 139
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 39/98 (39%), Gaps = 2/98 (2%)
Query: 3 GSIPSE--FGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNL 60
G I S+ FG L L L NQLTG P + + +L L NK L
Sbjct: 42 GRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGL 101
Query: 61 KGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFT 98
L L+L N P S +L+ T L+L N F
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
>pdb|2OU7|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|2OWB|A Chain A, Structure Of The Catalytic Domain Of Human Polo-Like
Kinase 1
pdb|3FC2|A Chain A, Plk1 In Complex With Bi6727
Length = 335
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 58/262 (22%), Positives = 97/262 (37%), Gaps = 43/262 (16%)
Query: 190 ILEDGGFGTVYKATLPDGKTVAVKKFSQA----KTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF ++ + D K V K K + + E+ + HQ++V
Sbjct: 48 FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 107
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
G+ ++ +V E SL L L R A E ++ + C +H+D
Sbjct: 108 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 166
Query: 303 FGLARLI-----------SACETHVSTD------IAGTLGYIPPEYGQSRMSTTRGDVYS 345
L L T V D + GT YI PE + + DV+S
Sbjct: 167 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 226
Query: 346 FGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKM 405
G I+ L+ K P F+ + + + ++KK + P +N + ++ KM
Sbjct: 227 IGCIMYTLLVGK----PPFE----TSCLKETYLRIKKNEYS---IPKHINPVAASLIQKM 275
Query: 406 LRIAADCVADNPATRPTMLHVL 427
L+ +P RPT+ +L
Sbjct: 276 LQT-------DPTARPTINELL 290
>pdb|3THB|A Chain A, Structure Of Plk1 Kinase Domain In Complex With A
Benzolactam-Derived Inhibitor
Length = 333
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 43/262 (16%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF ++ + D K V V K K + + E+ + HQ++V
Sbjct: 46 FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 105
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
G+ ++ +V E SL L L R A E ++ + C +H+D
Sbjct: 106 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 164
Query: 303 FGLARLI-----------SACETHVSTD------IAGTLGYIPPEYGQSRMSTTRGDVYS 345
L L T V D + GT YI PE + + DV+S
Sbjct: 165 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 224
Query: 346 FGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKM 405
G I+ L+ K P F+ + + + ++KK + P +N + ++ KM
Sbjct: 225 IGCIMYTLLVGK----PPFE----TSCLKETYLRIKKNEYS---IPKHINPVAASLIQKM 273
Query: 406 LRIAADCVADNPATRPTMLHVL 427
L+ +P RPT+ +L
Sbjct: 274 LQT-------DPTARPTINELL 288
>pdb|3KB7|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
Pyrazoloquinazoline Inhibitor
Length = 311
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 43/262 (16%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF ++ + D K V V K K + + E+ + HQ++V
Sbjct: 24 FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 83
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
G+ ++ +V E SL L L R A E ++ + C +H+D
Sbjct: 84 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 142
Query: 303 FGLARLI-----------SACETHVSTD------IAGTLGYIPPEYGQSRMSTTRGDVYS 345
L L T V D + GT YI PE + + DV+S
Sbjct: 143 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWS 202
Query: 346 FGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKM 405
G I+ L+ K P F+ + + + ++KK + P +N + ++ KM
Sbjct: 203 IGCIMYTLLVGK----PPFE----TSCLKETYLRIKKNEYS---IPKHINPVAASLIQKM 251
Query: 406 LRIAADCVADNPATRPTMLHVL 427
L+ +P RPT+ +L
Sbjct: 252 LQT-------DPTARPTINELL 266
>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1I09|B Chain B, Structure Of Glycogen Synthase Kinase-3 (Gsk3b)
pdb|1J1B|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1B|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Amppnp
pdb|1J1C|A Chain A, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|1J1C|B Chain B, Binary Complex Structure Of Human Tau Protein Kinase I
With Adp
pdb|2JLD|A Chain A, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|2JLD|B Chain B, Extremely Tight Binding Of Ruthenium Complex To Glycogen
Synthase Kinase 3
pdb|3M1S|A Chain A, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3M1S|B Chain B, Structure Of Ruthenium Half-Sandwich Complex Bound To
Glycogen Synthase Kinase 3
pdb|3PUP|A Chain A, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
pdb|3PUP|B Chain B, Structure Of Glycogen Synthase Kinase 3 Beta (Gsk3b) In
Complex With A Ruthenium Octasporine Ligand (Os1)
Length = 420
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 109
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 110 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 165
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 166 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSR 220
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 221 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 251
>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
pdb|3SAY|B Chain B, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta
(Gsk3b) In Complex With Inhibitor 142
Length = 430
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 109
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 110 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 165
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 166 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSR 220
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 221 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 251
>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACC|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACD|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACD|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACG|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACG|B Chain B, Gsk3b In Complex With Inhibitor
pdb|4ACH|A Chain A, Gsk3b In Complex With Inhibitor
pdb|4ACH|B Chain B, Gsk3b In Complex With Inhibitor
Length = 465
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 99 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 154
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 155 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 210
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 211 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSR 265
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 266 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 296
>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRK|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRL|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As
Gsk-3beta Inhibitors
pdb|3ZRM|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
pdb|3ZRM|B Chain B, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-
3beta Inhibitors
Length = 371
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 32 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 87
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 88 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 143
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 144 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSR 198
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 199 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 229
>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
pdb|4AFJ|B Chain B, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective
Gsk-3 Inhibitors
Length = 367
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 35 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 90
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 91 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 143
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 144 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 201
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 202 IFGATDY-TSSIDVWSAGCVLAELL 225
>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
pdb|1GNG|B Chain B, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With
Frattide Peptide
Length = 378
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 46 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 101
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 102 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 154
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 155 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 212
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 213 IFGATDY-TSSIDVWSAGCVLAELL 236
>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
pdb|3F7Z|B Chain B, X-ray Co-crystal Structure Of Glycogen Synthase Kinase
3beta In Complex With An Inhibitor
Length = 350
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 28 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 83
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 84 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 136
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 137 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 194
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 195 IFGATDY-TSSIDVWSAGCVLAELL 218
>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Inhibitor 7d
Length = 350
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 83 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 135
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 193
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 194 IFGATDY-TSSIDVWSAGCVLAELL 217
>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp
pdb|1PYX|B Chain B, Gsk-3 Beta Complexed With Amp-Pnp
pdb|3DU8|A Chain A, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
pdb|3DU8|B Chain B, Crystal Structure Of Gsk-3 Beta In Complex With
Nms-869553a
Length = 422
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 56 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 111
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 112 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 167
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 168 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSR 222
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 223 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 253
>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Imidazopyridine Inhibitor
Length = 382
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 88/209 (42%), Gaps = 54/209 (25%)
Query: 186 TLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-L 243
T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L
Sbjct: 35 TDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRL 90
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSS 292
+ S E+K VY +N LD RAK+ Y++
Sbjct: 91 RYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL---- 143
Query: 293 ARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYI 327
R LA++H DFG A+ + E +VS + Y
Sbjct: 144 FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYR 201
Query: 328 PPE--YGQSRMSTTRGDVYSFGVILLELV 354
PE +G + T+ DV+S G +L EL+
Sbjct: 202 APELIFGATDY-TSSIDVWSAGCVLAELL 229
>pdb|2YAC|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With
Nms-P937
pdb|4A4L|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
5-(2-Amino-Pyrimidin-4-Yl)-1h-Pyrrole Inhibitor
pdb|4A4O|A Chain A, Crystal Structure Of Polo-Like Kinase 1 In Complex With A
2-
(2-Amino-Pyrimidin-4-Yl)-1,5,6,
7-Tetrahydro-Pyrrolopyridin- 4-One Inhibitor
Length = 311
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 43/262 (16%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF ++ + D K V V K K + + E+ + HQ++V
Sbjct: 24 FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 83
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
G+ ++ +V E SL L L R A E ++ + C +H+D
Sbjct: 84 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 142
Query: 303 FGLARLI-----------SACETHVSTD------IAGTLGYIPPEYGQSRMSTTRGDVYS 345
L L T V D + GT YI PE + + DV+S
Sbjct: 143 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWS 202
Query: 346 FGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKM 405
G I+ L+ K P F+ + + + ++KK + P +N + ++ KM
Sbjct: 203 IGCIMYTLLVGK----PPFE----TSCLKETYLRIKKNEYS---IPKHINPVAASLIQKM 251
Query: 406 LRIAADCVADNPATRPTMLHVL 427
L+ +P RPT+ +L
Sbjct: 252 LQT-------DPTARPTINELL 266
>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3D|B Chain B, Gsk-3 Beta Complexed With Staurosporine
pdb|1Q3W|A Chain A, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q3W|B Chain B, Gsk-3 Beta Complexed With Alsterpaullone
pdb|1Q41|A Chain A, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q41|B Chain B, Gsk-3 Beta Complexed With Indirubin-3'-Monoxime
pdb|1Q4L|A Chain A, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|1Q4L|B Chain B, Gsk-3 Beta Complexed With Inhibitor I-5
pdb|3Q3B|A Chain A, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
pdb|3Q3B|B Chain B, 6-Amino-4-(Pyrimidin-4-Yl)pyridones: Novel Glycogen
Synthase Kinase-3 Inhibitors
Length = 424
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 58 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 113
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 114 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 169
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 170 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSR 224
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 225 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 255
>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
pdb|2OW3|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With Bis-
(Indole)maleimide Pyridinophane Inhibitor
Length = 352
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 83 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 135
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 193
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 194 IFGATDY-TSSIDVWSAGCVLAELL 217
>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|1Q5K|B Chain B, Crystal Structure Of Glycogen Synthase Kinase 3 In
Complexed With Inhibitor
pdb|3I4B|A Chain A, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3I4B|B Chain B, Crystal Structure Of Gsk3b In Complex With A
Pyrimidylpyrrole Inhibitor
pdb|3L1S|A Chain A, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
pdb|3L1S|B Chain B, 3-Aryl-4-(Arylhydrazono)-1h-Pyrazol-5-Ones: Highly Ligand
Efficient And Potent Inhibitors Of Gsk3
Length = 414
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 48 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 103
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 104 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 159
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 160 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSR 214
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 215 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 245
>pdb|2V5Q|A Chain A, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|B Chain B, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 315
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 59/262 (22%), Positives = 98/262 (37%), Gaps = 43/262 (16%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF ++ + D K V V K K + + E+ + HQ++V
Sbjct: 28 FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 87
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
G+ ++ +V E SL L L R A E ++ + C +H+D
Sbjct: 88 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 146
Query: 303 FGLARLI-----------SACETHVSTD------IAGTLGYIPPEYGQSRMSTTRGDVYS 345
L L T V D + GT YI PE + + DV+S
Sbjct: 147 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKTLCGTPNYIAPEVLSKKGHSFEVDVWS 206
Query: 346 FGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKM 405
G I+ L+ K P F+ + + + ++KK + P +N + ++ KM
Sbjct: 207 IGCIMYTLLVGK----PPFE----TSCLKETYLRIKKNEYS---IPKHINPVAASLIQKM 255
Query: 406 LRIAADCVADNPATRPTMLHVL 427
L+ +P RPT+ +L
Sbjct: 256 LQT-------DPTARPTINELL 270
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 1/104 (0%)
Query: 18 LYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFFDGGW 77
LYL NQ T +P+ L L ++L+ N+ S S N+ L L LS N
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 78 PRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNML 121
PR+ L L LH N + +L+ L HL + N L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A
Benzoimidazol Inhibitor
Length = 372
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 40 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 95
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 96 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 148
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 149 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSRYYRAPEL 206
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 207 IFGATDY-TSSIDVWSAGCVLAELL 230
>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex
Length = 353
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 31 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 86
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 87 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 139
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 140 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSX--ICSRYYRAPEL 197
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 198 IFGATDY-TSSIDVWSAGCVLAELL 221
>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
pdb|1R0E|B Chain B, Glycogen Synthase Kinase-3 Beta In Complex With
3-Indolyl-4- Arylmaleimide Inhibitor
Length = 391
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 89/212 (41%), Gaps = 54/212 (25%)
Query: 183 LKLTLVDILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNL 241
+ T ++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+
Sbjct: 25 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNI 80
Query: 242 V-LLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIA 289
V L + S E+K VY +N LD RAK+ Y++
Sbjct: 81 VRLRYFFYSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL- 136
Query: 290 CSSARGLAFLHQ-------------------------DFGLARLISACETHVSTDIAGTL 324
R LA++H DFG A+ + E +VS +
Sbjct: 137 ---FRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSR 191
Query: 325 GYIPPE--YGQSRMSTTRGDVYSFGVILLELV 354
Y PE +G + T+ DV+S G +L EL+
Sbjct: 192 YYRAPELIFGATDY-TSSIDVWSAGCVLAELL 222
>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|3SD0|B Chain B, Identification Of A Glycogen Synthase Kinase-3b Inhibitor
That Attenuates Hyperactivity In Clock Mutant Mice
pdb|4B7T|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin
Peptide And Leucettine L4
Length = 350
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 87/205 (42%), Gaps = 54/205 (26%)
Query: 190 ILEDGGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV-LLLGY 247
++ +G FG VY+A L D G+ VA+KK Q K +R E++ + K+ H N+V L +
Sbjct: 27 VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNR----ELQIMRKLDHCNIVRLRYFF 82
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKR-----------YKIACSSARGL 296
S E+K VY +N LD RAK+ Y++ R L
Sbjct: 83 YSSGEKKDEVY---LNLVLDYVPETVYRVARHYSRAKQTLPVIYVKLYMYQL----FRSL 135
Query: 297 AFLHQ-------------------------DFGLARLISACETHVSTDIAGTLGYIPPE- 330
A++H DFG A+ + E +VS + Y PE
Sbjct: 136 AYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVS--YICSRYYRAPEL 193
Query: 331 -YGQSRMSTTRGDVYSFGVILLELV 354
+G + T+ DV+S G +L EL+
Sbjct: 194 IFGATDY-TSSIDVWSAGCVLAELL 217
>pdb|2RKU|A Chain A, Structure Of Plk1 In Complex With Bi2536
Length = 294
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 96/258 (37%), Gaps = 43/258 (16%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF ++ + D K V V K K + + E+ + HQ++V
Sbjct: 22 FLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFH 81
Query: 246 GYCSFDEEKLLVYEYMVNGSLDLWL---RNATGSHEVLDRAKRYKIACSSARGLAFLHQD 302
G+ ++ +V E SL L L R A E ++ + C +H+D
Sbjct: 82 GFFEDNDFVFVVLELCRRRSL-LELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRD 140
Query: 303 FGLARLI-----------SACETHVSTD------IAGTLGYIPPEYGQSRMSTTRGDVYS 345
L L T V D + GT YI PE + + DV+S
Sbjct: 141 LKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 200
Query: 346 FGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKM 405
G I+ L+ K P F+ + + + ++KK + P +N + ++ KM
Sbjct: 201 IGCIMYTLLVGK----PPFE----TSCLKETYLRIKKNEYS---IPKHINPVAASLIQKM 249
Query: 406 LRIAADCVADNPATRPTM 423
L+ +P RPT+
Sbjct: 250 LQ-------TDPTARPTI 260
>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution.
pdb|2JED|B Chain B, The Crystal Structure Of The Kinase Domain Of The Protein
Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a
Resolution
Length = 352
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 42/186 (22%)
Query: 247 YCSFD--EEKLLVYEYMVNGSLDLWLRNATGSHEV-LDRAKRYKIACSSARGLAFLH--- 300
+C+F E V EY+ G L + + H+ L RA Y A GL FLH
Sbjct: 85 FCTFQTKENLFFVMEYLNGGDL---MYHIQSCHKFDLSRATFY--AAEIILGLQFLHSKG 139
Query: 301 ---QDFGLARLISACETHV-----------------STDIAGTLGYIPPEYGQSRMSTTR 340
+D L ++ + H+ + + GT YI PE +
Sbjct: 140 IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNEFCGTPDYIAPEILLGQKYNHS 199
Query: 341 GDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKP 400
D +SFGV+L E++ + P + +E+ +F ++ D+ P L +K
Sbjct: 200 VDWWSFGVLLYEMLIGQSPFHGQDEEE--------LFHSIR---MDNPFYPRWLEKEAKD 248
Query: 401 MMLKML 406
+++K+
Sbjct: 249 LLVKLF 254
>pdb|3SOA|A Chain A, Full-Length Human Camkii
Length = 444
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 61/244 (25%), Positives = 95/244 (38%), Gaps = 45/244 (18%)
Query: 210 VAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSL--D 267
+ KK S + H++ E +KH N+V L S + L+++ + G L D
Sbjct: 44 INTKKLS---ARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLIFDLVTGGELFED 100
Query: 268 LWLR----NATGSH---EVLDRAKRYK--------------IACSSARGLAFLHQDFGLA 306
+ R A SH ++L+ + S +G A DFGLA
Sbjct: 101 IVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLA 160
Query: 307 RLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTGPEFQE 366
+ E AGT GY+ PE + D+++ GVIL L+ P E Q
Sbjct: 161 IEVEG-EQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQH 219
Query: 367 KEGANLVGWVFQKMKKQQADDVLDPT--VLNAGSKPMMLKMLRIAADCVADNPATRPTML 424
+ ++Q++K A D P + +K ++ KML I NP+ R T
Sbjct: 220 R--------LYQQIKA-GAYDFPSPEWDTVTPEAKDLINKMLTI-------NPSKRITAA 263
Query: 425 HVLK 428
LK
Sbjct: 264 EALK 267
>pdb|3DB6|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 902
pdb|3D5X|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Wortmannin.
pdb|3DBE|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 557
pdb|3DBF|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 562
Length = 301
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 35/199 (17%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF Y+ T D K V V K K + + E+ + + ++V
Sbjct: 33 FLGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFH 92
Query: 246 GYCSFDEEKLLVYEYMVNGSL-DLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
G+ D+ +V E SL +L R V + RY + + +G+ +LH
Sbjct: 93 GFFEDDDFVYVVLEICRRRSLLELHKRRKA----VTEPEARYFMR-QTIQGVQYLHNNRV 147
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGLA I + D+ GT YI PE + +
Sbjct: 148 IHRDLKLGNLFLNDDMDVKIGDFGLATKIEF-DGERKKDLCGTPNYIAPEVLCKKGHSFE 206
Query: 341 GDVYSFGVILLELVTAKEP 359
D++S G IL L+ K P
Sbjct: 207 VDIWSLGCILYTLLVGKPP 225
>pdb|3D5V|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain.
pdb|3DB8|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 041
pdb|3DBC|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 257
pdb|3DBD|A Chain A, Crystal Structure Of An Activated (Thr->asp) Polo-Like
Kinase 1 (Plk1) Catalytic Domain In Complex With
Compound 094
Length = 317
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 74/199 (37%), Gaps = 35/199 (17%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF Y+ T D K V V K K + + E+ + + ++V
Sbjct: 49 FLGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFH 108
Query: 246 GYCSFDEEKLLVYEYMVNGSL-DLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
G+ D+ +V E SL +L R V + RY + + +G+ +LH
Sbjct: 109 GFFEDDDFVYVVLEICRRRSLLELHKRRKA----VTEPEARYFMR-QTIQGVQYLHNNRV 163
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGLA I + D+ GT YI PE + +
Sbjct: 164 IHRDLKLGNLFLNDDMDVKIGDFGLATKIEF-DGERKKDLCGTPNYIAPEVLCKKGHSFE 222
Query: 341 GDVYSFGVILLELVTAKEP 359
D++S G IL L+ K P
Sbjct: 223 VDIWSLGCILYTLLVGKPP 241
>pdb|4GT4|A Chain A, Structure Of Unliganded, Inactive Ror2 Kinase Domain
pdb|4GT4|B Chain B, Structure Of Unliganded, Inactive Ror2 Kinase Domain
Length = 308
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 183 LKLTLVDILEDGG---FGTVYKATL----PDGKTVAVK-KFSQAKTQG--HRQFTAEMET 232
+ L+ V +E+ G FG VYK L P +T AV K + K +G +F E
Sbjct: 23 ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAML 82
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSL 266
+++H N+V LLG + D+ +++ Y +G L
Sbjct: 83 RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDL 116
>pdb|1TKI|A Chain A, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
pdb|1TKI|B Chain B, Autoinhibited Serine Kinase Domain Of The Giant Muscle
Protein Titin
Length = 321
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 87/219 (39%), Gaps = 35/219 (15%)
Query: 184 KLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
K + + L G FG V++ K + KF + K E+ L +H+N++
Sbjct: 6 KYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQVLVKKEISILNIARHRNILH 65
Query: 244 LLGYCSFD--EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ 301
L + SF+ EE ++++E++ LD++ R T + E+ +R + L FLH
Sbjct: 66 L--HESFESMEELVMIFEFI--SGLDIFERINTSAFELNER-EIVSYVHQVCEALQFLHS 120
Query: 302 --------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSR 335
+FG AR + + A Y PE Q
Sbjct: 121 HNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPE--YYAPEVHQHD 178
Query: 336 MSTTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVG 374
+ +T D++S G ++ L++ P E ++ N++
Sbjct: 179 VVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMN 217
>pdb|3ZZW|A Chain A, Crystal Structure Of The Kinase Domain Of Ror2
pdb|3ZZW|B Chain B, Crystal Structure Of The Kinase Domain Of Ror2
Length = 289
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 183 LKLTLVDILEDGG---FGTVYKATL----PDGKTVAVK-KFSQAKTQG--HRQFTAEMET 232
+ L+ V +E+ G FG VYK L P +T AV K + K +G +F E
Sbjct: 6 ISLSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAML 65
Query: 233 LGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSL 266
+++H N+V LLG + D+ +++ Y +G L
Sbjct: 66 RARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDL 99
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES
BY Mimicking Host Substrates
Length = 319
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 30/199 (15%)
Query: 187 LVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLGKVKHQNLVL 243
L+ + G F V A + GK VAVK +Q + ++ E+ + + H N+V
Sbjct: 11 LLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVK 70
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDF 303
L ++ LV EY G + +L E RAK +I + + + HQ F
Sbjct: 71 LFEVIETEKTLYLVMEYASGGEVFDYLVAHGWMKEKEARAKFRQIVSA----VQYCHQKF 126
Query: 304 GLARLISACETHVSTDI----------------------AGTLGYIPPEYGQ-SRMSTTR 340
+ R + A + D+ G+ Y PE Q +
Sbjct: 127 IVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPE 186
Query: 341 GDVYSFGVILLELVTAKEP 359
DV+S GVIL LV+ P
Sbjct: 187 VDVWSLGVILYTLVSGSLP 205
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 179 QQPLL-KLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLG 234
+QP + L+ + G F V A + GK VAVK +Q + ++ E+ +
Sbjct: 9 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMK 68
Query: 235 KVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR 294
+ H N+V L ++ LV EY G + +L E RAK +I +
Sbjct: 69 VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSA--- 125
Query: 295 GLAFLHQDFGLARLISACETHVSTDI----------------------AGTLGYIPPEYG 332
+ + HQ F + R + A + D+ G+ Y PE
Sbjct: 126 -VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELF 184
Query: 333 Q-SRMSTTRGDVYSFGVILLELVTAKEP 359
Q + DV+S GVIL LV+ P
Sbjct: 185 QGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 76/199 (38%), Gaps = 30/199 (15%)
Query: 187 LVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLGKVKHQNLVL 243
L+ + G F V A + GK VAVK +Q + ++ E+ + + H N+V
Sbjct: 18 LLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMKVLNHPNIVK 77
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDF 303
L ++ LV EY G + +L E RAK +I + + + HQ F
Sbjct: 78 LFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSA----VQYCHQKF 133
Query: 304 GLARLISACETHVSTDI----------------------AGTLGYIPPEYGQ-SRMSTTR 340
+ R + A + D+ G+ Y PE Q +
Sbjct: 134 IVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPE 193
Query: 341 GDVYSFGVILLELVTAKEP 359
DV+S GVIL LV+ P
Sbjct: 194 VDVWSLGVILYTLVSGSLP 212
>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With
Staurosporine At 2a Resolution
Length = 345
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 73/186 (39%), Gaps = 42/186 (22%)
Query: 247 YCSFD--EEKLLVYEYMVNGSLDLWLRNATGSHEV-LDRAKRYKIACSSARGLAFLH--- 300
+C+F E V EY+ G L + + H+ L RA Y A GL FLH
Sbjct: 84 FCTFQTKENLFFVMEYLNGGDL---MYHIQSCHKFDLSRATFY--AAEIILGLQFLHSKG 138
Query: 301 ---QDFGLARLISACETHV-----------------STDIAGTLGYIPPEYGQSRMSTTR 340
+D L ++ + H+ + GT YI PE +
Sbjct: 139 IVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNXFCGTPDYIAPEILLGQKYNHS 198
Query: 341 GDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKP 400
D +SFGV+L E++ + P + +E+ +F ++ D+ P L +K
Sbjct: 199 VDWWSFGVLLYEMLIGQSPFHGQDEEE--------LFHSIR---MDNPFYPRWLEKEAKD 247
Query: 401 MMLKML 406
+++K+
Sbjct: 248 LLVKLF 253
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 6 PSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSH 65
P F + LQ LY +N+LT +L L +L+L N + NLK L+H
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTH 109
Query: 66 LDLSSNFFD 74
+ L +N +D
Sbjct: 110 IYLYNNPWD 118
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 6/101 (5%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSL-GNLK 61
S+P+ G Q L+L NNQ+T P L L +L NK + +PT + L
Sbjct: 25 ASVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT 81
Query: 62 GLSHLDLSSNFFDGGWPR-SLGNLSYSTYLDLHDNKFTREI 101
L+ LDL+ N PR + NL T++ L++N + E
Sbjct: 82 QLTQLDLNDNHLKSI-PRGAFDNLKSLTHIYLYNNPWDCEC 121
>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B)
pdb|3LM5|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B
(STK17B) IN Complex With Quercetin
Length = 327
Score = 35.8 bits (81), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 302 DFGLARLI-SACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP- 359
DFG++R I ACE +I GT Y+ PE TT D+++ G+I L+T P
Sbjct: 177 DFGMSRKIGHACELR---EIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPF 233
Query: 360 TGPEFQE 366
G + QE
Sbjct: 234 VGEDNQE 240
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 59/132 (44%), Gaps = 5/132 (3%)
Query: 7 SEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHL 66
S++ D L L L N Q+ +I ++ + L +L L N + +P + NL L L
Sbjct: 219 SKYDDQL-WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE-LPAEIKNLSNLRVL 275
Query: 67 DLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNMLCGKIP 126
DLS N P LG+ Y DN T +P GNL L+ L V N L +
Sbjct: 276 DLSHNRL-TSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFL 333
Query: 127 EKICKSRLEGLV 138
+ + + + GL+
Sbjct: 334 KILTEKSVTGLI 345
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 79/208 (37%), Gaps = 31/208 (14%)
Query: 179 QQPLL-KLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLG 234
+QP + L+ + G F V A + GK VAVK +Q + ++ E+ +
Sbjct: 9 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIMK 68
Query: 235 KVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR 294
+ H N+V L ++ LV EY G + +L E RAK +I +
Sbjct: 69 VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSA--- 125
Query: 295 GLAFLHQDFGLARLISACETHVSTDI----------------------AGTLGYIPPEYG 332
+ + HQ F + R + A + D+ G Y PE
Sbjct: 126 -VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDAFCGAPPYAAPELF 184
Query: 333 Q-SRMSTTRGDVYSFGVILLELVTAKEP 359
Q + DV+S GVIL LV+ P
Sbjct: 185 QGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 179 QQPLL-KLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLG 234
+QP + L+ + G F V A + GK VAV+ +Q + ++ E+ +
Sbjct: 9 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMK 68
Query: 235 KVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR 294
+ H N+V L ++ LV EY G + +L E RAK +I +
Sbjct: 69 VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSA--- 125
Query: 295 GLAFLHQDFGLARLISACETHVSTDI----------------------AGTLGYIPPEYG 332
+ + HQ F + R + A + D+ G+ Y PE
Sbjct: 126 -VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDTFCGSPPYAAPELF 184
Query: 333 Q-SRMSTTRGDVYSFGVILLELVTAKEP 359
Q + DV+S GVIL LV+ P
Sbjct: 185 QGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 35.0 bits (79), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 80/208 (38%), Gaps = 31/208 (14%)
Query: 179 QQPLL-KLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLG 234
+QP + L+ + G F V A + GK VAV+ +Q + ++ E+ +
Sbjct: 9 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVRIIDKTQLNSSSLQKLFREVRIMK 68
Query: 235 KVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR 294
+ H N+V L ++ LV EY G + +L E RAK +I +
Sbjct: 69 VLNHPNIVKLFEVIETEKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKFRQIVSA--- 125
Query: 295 GLAFLHQDFGLARLISACETHVSTDI----------------------AGTLGYIPPEYG 332
+ + HQ F + R + A + D+ G+ Y PE
Sbjct: 126 -VQYCHQKFIVHRDLKAENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELF 184
Query: 333 Q-SRMSTTRGDVYSFGVILLELVTAKEP 359
Q + DV+S GVIL LV+ P
Sbjct: 185 QGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 28/71 (39%)
Query: 51 GPVPTSLGNLKGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQ 110
P L G DL G PR L +LS +D H +F+R GN+A
Sbjct: 255 APALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIAS 314
Query: 111 LEHLDVLRNML 121
LD LR +
Sbjct: 315 AVVLDALRRLF 325
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 6 PSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLS 64
P F L+ L +L +GQL L KLN+ N S +P NL L
Sbjct: 92 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 151
Query: 65 HLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQ 103
H+DLS N Y + ++D +F RE PQ
Sbjct: 152 HVDLSYN--------------YIQTITVNDLQFLRENPQ 176
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 15/99 (15%)
Query: 6 PSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLS 64
P F L+ L +L +GQL L KLN+ N S +P NL L
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 65 HLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQ 103
H+DLS N Y + ++D +F RE PQ
Sbjct: 157 HVDLSYN--------------YIQTITVNDLQFLRENPQ 181
>pdb|1FOT|A Chain A, Structure Of The Unliganded Camp-Dependent Protein Kinase
Catalytic Subunit From Saccharomyces Cerevisiae
Length = 318
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 18/107 (16%)
Query: 253 EKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISAC 312
E L EY+ S D+ R+ + +LD+ KI DFG A+ +
Sbjct: 114 EVCLALEYL--HSKDIIYRDLKPENILLDKNGHIKIT------------DFGFAKYVP-- 157
Query: 313 ETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
V+ + GT YI PE ++ D +SFG+++ E++ P
Sbjct: 158 --DVTYXLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTP 202
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PD--GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 11 RIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 70
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 71 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 129
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 130 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 189
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 190 TSASDVWMFGVCMWEIL 206
>pdb|3MN3|A Chain A, An Inhibited Conformation For The Protein Kinase Domain Of
The Saccharomyces Cerevisiae Ampk Homolog Snf1
Length = 271
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 187 LVDILEDGGFGTV---YKATLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQN 240
+V L +G FG V Y T G+ VA+K ++ AK+ + E+ L ++H +
Sbjct: 8 IVKTLGEGSFGKVKLAYHTT--TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPH 65
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH 300
++ L +E ++V EY N D ++ S + A+R+ SA H
Sbjct: 66 IIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ---EARRFFQQIISAVEYCHRH 122
Query: 301 Q----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRM-S 337
+ DFGL+ +++ + + G+ Y PE ++ +
Sbjct: 123 KIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTSCGSPNYAAPEVISGKLYA 180
Query: 338 TTRGDVYSFGVILLELVTAKEPTGPE 363
DV+S GVIL ++ + P E
Sbjct: 181 GPEVDVWSCGVILYVMLCRRLPFDDE 206
>pdb|2FH9|A Chain A, Structure And Dimerization Of The Kinase Domain From Yeast
Snf1
Length = 274
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 187 LVDILEDGGFGTV---YKATLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQN 240
+V L +G FG V Y T G+ VA+K ++ AK+ + E+ L ++H +
Sbjct: 12 IVKTLGEGSFGKVKLAYHTT--TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPH 69
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH 300
++ L +E ++V EY N D ++ S + A+R+ SA H
Sbjct: 70 IIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ---EARRFFQQIISAVEYCHRH 126
Query: 301 Q----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRM-S 337
+ DFGL+ +++ + + G+ Y PE ++ +
Sbjct: 127 KIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTSCGSPNYAAPEVISGKLYA 184
Query: 338 TTRGDVYSFGVILLELVTAKEPTGPE 363
DV+S GVIL ++ + P E
Sbjct: 185 GPEVDVWSCGVILYVMLCRRLPFDDE 210
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 39 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 98
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 99 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 157
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 158 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 217
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 218 TSASDVWMFGVCMWEIL 234
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 11 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 70
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 71 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 129
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 130 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 189
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 190 TSASDVWMFGVCMWEIL 206
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 16 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 75
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 76 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 134
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 135 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 194
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 195 TSASDVWMFGVCMWEIL 211
>pdb|3DAE|A Chain A, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
pdb|3DAE|B Chain B, Crystal Structure Of Phosphorylated Snf1 Kinase Domain
Length = 283
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 187 LVDILEDGGFGTV---YKATLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQN 240
+V L +G FG V Y T G+ VA+K ++ AK+ + E+ L ++H +
Sbjct: 18 IVKTLGEGSFGKVKLAYHTT--TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPH 75
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH 300
++ L +E ++V EY N D ++ S + A+R+ SA H
Sbjct: 76 IIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ---EARRFFQQIISAVEYCHRH 132
Query: 301 Q----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRM-S 337
+ DFGL+ +++ + + G+ Y PE ++ +
Sbjct: 133 KIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTSCGSPNYAAPEVISGKLYA 190
Query: 338 TTRGDVYSFGVILLELVTAKEPTGPE 363
DV+S GVIL ++ + P E
Sbjct: 191 GPEVDVWSCGVILYVMLCRRLPFDDE 216
>pdb|3HYH|A Chain A, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
pdb|3HYH|B Chain B, Crystal Structure Of The Protein Kinase Domain Of Yeast
Amp-Activated Protein Kinase Snf1
Length = 275
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 36/206 (17%)
Query: 187 LVDILEDGGFGTV---YKATLPDGKTVAVKKFSQ---AKTQGHRQFTAEMETLGKVKHQN 240
+V L +G FG V Y T G+ VA+K ++ AK+ + E+ L ++H +
Sbjct: 17 IVKTLGEGSFGKVKLAYHTT--TGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPH 74
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLH 300
++ L +E ++V EY N D ++ S + A+R+ SA H
Sbjct: 75 IIKLYDVIKSKDEIIMVIEYAGNELFDYIVQRDKMSEQ---EARRFFQQIISAVEYCHRH 131
Query: 301 Q----------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRM-S 337
+ DFGL+ +++ + + G+ Y PE ++ +
Sbjct: 132 KIVHRDLKPENLLLDEHLNVKIADFGLSNIMT--DGNFLKTSCGSPNYAAPEVISGKLYA 189
Query: 338 TTRGDVYSFGVILLELVTAKEPTGPE 363
DV+S GVIL ++ + P E
Sbjct: 190 GPEVDVWSCGVILYVMLCRRLPFDDE 215
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 8 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 67
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 68 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 126
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 127 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 186
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 187 TSASDVWMFGVCMWEIL 203
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 14 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 73
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 74 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 132
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 133 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 192
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 193 TSASDVWMFGVCMWEIL 209
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 27/197 (13%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PDGKT--VAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 13 RIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 72
Query: 239 QNLVLLLGY------------CSFDEEK--LLVYEYMVN-GSLDLWLRNATGSHEVLDRA 283
++V L+G C+ E + L V +Y ++ SL L+ + + L+ +
Sbjct: 73 PHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLE-S 131
Query: 284 KRYKIACSSARGLAFLHQD------FGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
KR+ +AR + D FGL+R + + ++ + ++ PE R
Sbjct: 132 KRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRF 191
Query: 338 TTRGDVYSFGVILLELV 354
T+ DV+ FGV + E++
Sbjct: 192 TSASDVWMFGVCMWEIL 208
>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
pdb|2H34|B Chain B, Apoenzyme Crystal Structure Of The Tuberculosis
SerineTHREONINE Kinase, Pkne
Length = 309
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 292 SARGLAFLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILL 351
SA A+L DFG+A + + + GTL Y PE +T R D+Y+ +L
Sbjct: 168 SADDFAYL-VDFGIASATTDEKLTQLGNTVGTLYYXAPERFSESHATYRADIYALTCVLY 226
Query: 352 ELVTAKEP 359
E +T P
Sbjct: 227 ECLTGSPP 234
>pdb|2X4F|A Chain A, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156.
pdb|2X4F|B Chain B, The Crystal Structure Of The Human Myosin Light Chain
Kinase Loc340156
Length = 373
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 76/202 (37%), Gaps = 32/202 (15%)
Query: 185 LTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVL 243
++ +IL G FG V+K G +A K + + E+ + ++ H NL+
Sbjct: 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQ 150
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-- 301
L + +LV EY+ G L + + + + LD K C G+ +HQ
Sbjct: 151 LYDAFESKNDIVLVMEYVDGGELFDRIIDESYNLTELDTILFMKQIC---EGIRHMHQMY 207
Query: 302 ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMS 337
DFGLAR E + + GT ++ PE
Sbjct: 208 ILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK-LKVNF-GTPEFLAPEVVNYDFV 265
Query: 338 TTRGDVYSFGVILLELVTAKEP 359
+ D++S GVI L++ P
Sbjct: 266 SFPTDMWSVGVIAYMLLSGLSP 287
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 80/200 (40%), Gaps = 33/200 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PD--GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 11 RIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 70
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
++V L+G + + ++ E G L +L+ S LD A A + LA+
Sbjct: 71 PHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKFS---LDLASLILYAYQLSTALAY 126
Query: 299 LHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQS 334
L DFGL+R + + ++ + ++ PE
Sbjct: 127 LESKRFVHRDIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINF 186
Query: 335 RMSTTRGDVYSFGVILLELV 354
R T+ DV+ FGV + E++
Sbjct: 187 RRFTSASDVWMFGVCMWEIL 206
>pdb|1Y8G|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
pdb|1Y8G|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Inactive Double Mutant With Selenomethionine
Length = 327
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 77/208 (37%), Gaps = 31/208 (14%)
Query: 179 QQPLL-KLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLG 234
+QP + L+ + G F V A + GK VAVK +Q + ++ E+
Sbjct: 9 EQPHIGNYRLLKTIGKGNFAKVKLARHILTGKEVAVKIIDKTQLNSSSLQKLFREVRIXK 68
Query: 235 KVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSAR 294
+ H N+V L ++ LV EY G + +L E RAK +I +
Sbjct: 69 VLNHPNIVKLFEVIETEKTLYLVXEYASGGEVFDYLVAHGRXKEKEARAKFRQIVSA--- 125
Query: 295 GLAFLHQDFGLARLISACETHVSTD----------------------IAGTLGYIPPEYG 332
+ + HQ F + R + A + D G Y PE
Sbjct: 126 -VQYCHQKFIVHRDLKAENLLLDADXNIKIADFGFSNEFTFGNKLDAFCGAPPYAAPELF 184
Query: 333 Q-SRMSTTRGDVYSFGVILLELVTAKEP 359
Q + DV+S GVIL LV+ P
Sbjct: 185 QGKKYDGPEVDVWSLGVILYTLVSGSLP 212
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 193 DGGFGTVYKATL--PD--GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGY 247
+G FG V++ P+ VA+K + R+ F E T+ + H ++V L+G
Sbjct: 400 EGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGV 459
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------ 301
+ + ++ E G L +L+ S LD A A + LA+L
Sbjct: 460 IT-ENPVWIIMELCTLGELRSFLQVRKFS---LDLASLILYAYQLSTALAYLESKRFVHR 515
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + + ++ + ++ PE R T+ DV
Sbjct: 516 DIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDV 575
Query: 344 YSFGVILLELV 354
+ FGV + E++
Sbjct: 576 WMFGVCMWEIL 586
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 76/191 (39%), Gaps = 33/191 (17%)
Query: 193 DGGFGTVYKATL--PD--GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKHQNLVLLLGY 247
+G FG V++ P+ VA+K + R+ F E T+ + H ++V L+G
Sbjct: 400 EGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGV 459
Query: 248 CSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ------ 301
+ + ++ E G L +L+ S LD A A + LA+L
Sbjct: 460 IT-ENPVWIIMELCTLGELRSFLQVRKFS---LDLASLILYAYQLSTALAYLESKRFVHR 515
Query: 302 ------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDV 343
DFGL+R + + ++ + ++ PE R T+ DV
Sbjct: 516 DIAARNVLVSATDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDV 575
Query: 344 YSFGVILLELV 354
+ FGV + E++
Sbjct: 576 WMFGVCMWEIL 586
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 79/200 (39%), Gaps = 33/200 (16%)
Query: 184 KLTLVDILEDGGFGTVYKATL--PD--GKTVAVKKFSQAKTQGHRQ-FTAEMETLGKVKH 238
++ L + +G FG V++ P+ VA+K + R+ F E T+ + H
Sbjct: 11 RIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDH 70
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
++V L+G + + ++ E G L +L+ S LD A A + LA+
Sbjct: 71 PHIVKLIGVIT-ENPVWIIMELCTLGELRSFLQVRKFS---LDLASLILYAYQLSTALAY 126
Query: 299 LHQ------------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQS 334
L DFGL+R + ++ + ++ PE
Sbjct: 127 LESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTXXKASKGKLPIKWMAPESINF 186
Query: 335 RMSTTRGDVYSFGVILLELV 354
R T+ DV+ FGV + E++
Sbjct: 187 RRFTSASDVWMFGVCMWEIL 206
>pdb|1YXS|A Chain A, Crystal Structure Of Kinase Pim1 With P123m Mutation
Length = 293
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 78/200 (39%), Gaps = 31/200 (15%)
Query: 190 ILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFT------AEMETLGKVK--HQN 240
+L GGFG+VY + D VA+K + + + E+ L KV
Sbjct: 15 LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 74
Query: 241 LVLLLGYCSFDEEKLLVYEYM--VNGSLDLWLRNATGSHEVLDRAKRYKI--ACSSARGL 296
++ LL + + +L+ E M V D + E L R+ +++ A
Sbjct: 75 VIRLLDWFERPDSFVLILERMEPVQDLFDF-ITERGALQEELARSFFWQVLEAVRHCHNC 133
Query: 297 AFLHQDF-----------GLARLI-----SACETHVSTDIAGTLGYIPPEYGQ-SRMSTT 339
LH+D G +LI + + V TD GT Y PPE+ + R
Sbjct: 134 GVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGR 193
Query: 340 RGDVYSFGVILLELVTAKEP 359
V+S G++L ++V P
Sbjct: 194 SAAVWSLGILLYDMVCGDIP 213
>pdb|3D5W|A Chain A, Crystal Structure Of A Phosphorylated Polo-Like Kinase 1
(Plk1) Catalytic Domain In Complex With Adp
Length = 317
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 73/199 (36%), Gaps = 35/199 (17%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF Y+ T D K V V K K + + E+ + + ++V
Sbjct: 49 FLGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFH 108
Query: 246 GYCSFDEEKLLVYEYMVNGSL-DLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
G+ D+ +V E SL +L R V + RY + + +G+ +LH
Sbjct: 109 GFFEDDDFVYVVLEICRRRSLLELHKRRKA----VTEPEARYFMR-QTIQGVQYLHNNRV 163
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGLA I + + GT YI PE + +
Sbjct: 164 IHRDLKLGNLFLNDDMDVKIGDFGLATKIEF-DGERKKXLCGTPNYIAPEVLCKKGHSFE 222
Query: 341 GDVYSFGVILLELVTAKEP 359
D++S G IL L+ K P
Sbjct: 223 VDIWSLGCILYTLLVGKPP 241
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 3 GSIPSE-FGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLK 61
S+PS+ F KL+ LYL +N+L +L L L +T NK L
Sbjct: 50 SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLV 109
Query: 62 GLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNL-GNLAQLEHLDVLRNM 120
L+ L L N PR +L+ TYL L N+ + +P+ + L L+ L + N
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLYNNQ 168
Query: 121 LCGKIPE 127
L ++PE
Sbjct: 169 L-KRVPE 174
>pdb|3D5U|A Chain A, Crystal Structure Of A Wildtype Polo-Like Kinase 1 (Plk1)
Catalytic Domain
Length = 317
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 73/199 (36%), Gaps = 35/199 (17%)
Query: 190 ILEDGGFGTVYKATLPDGKTV----AVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLL 245
L GGF Y+ T D K V V K K + + E+ + + ++V
Sbjct: 49 FLGKGGFAKCYEITDMDTKEVFAGKVVPKSMLLKPHQKEKMSTEIAIHKSLDNPHVVGFH 108
Query: 246 GYCSFDEEKLLVYEYMVNGSL-DLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
G+ D+ +V E SL +L R V + RY + + +G+ +LH
Sbjct: 109 GFFEDDDFVYVVLEICRRRSLLELHKRRKA----VTEPEARYFMR-QTIQGVQYLHNNRV 163
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFGLA I T + GT YI PE + +
Sbjct: 164 IHRDLKLGNLFLNDDMDVKIGDFGLATKIEFDGERKKT-LCGTPNYIAPEVLCKKGHSFE 222
Query: 341 GDVYSFGVILLELVTAKEP 359
D++S G IL L+ K P
Sbjct: 223 VDIWSLGCILYTLLVGKPP 241
>pdb|3GGF|A Chain A, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
pdb|3GGF|B Chain B, Crystal Structure Of Human SerineTHREONINE-Protein Kinase
Mst4 In Complex With An Quinazolin
Length = 301
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
DFG+A ++ + +T GT ++ PE Q ++ D++S G+ +EL + P
Sbjct: 163 DFGVAGQLTDTQIKRNT-FVGTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPP 219
>pdb|2ACX|A Chain A, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
pdb|2ACX|B Chain B, Crystal Structure Of G Protein Coupled Receptor Kinase 6
Bound To Amppnp
Length = 576
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
D GLA + E GT+GY+ PE ++ T D ++ G +L E++ + P
Sbjct: 329 DLGLA--VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP-- 384
Query: 362 PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATR 420
FQ+++ +K+K+++ + ++ V S+ + + + + +PA R
Sbjct: 385 --FQQRK---------KKIKREEVERLVK-EVPEEYSERFSPQARSLCSQLLCKDPAER 431
>pdb|3P23|A Chain A, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|B Chain B, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|C Chain C, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
pdb|3P23|D Chain D, Crystal Structure Of The Human Kinase And Rnase Domains In
Complex With Adp
Length = 432
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 56/133 (42%), Gaps = 21/133 (15%)
Query: 302 DFGLARLISACETHVS--TDIAGTLGYIPPEY---GQSRMSTTRGDVYSFGVILLELVT- 355
DFGL + ++ S + + GT G+I PE T D++S G + +++
Sbjct: 166 DFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISE 225
Query: 356 AKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVAD 415
P G Q + L + ++ +DV+ ++ ++ KM +A
Sbjct: 226 GSHPFGKSLQRQANILLGACSLDCLHPEKHEDVI--------ARELIEKM-------IAM 270
Query: 416 NPATRPTMLHVLK 428
+P RP+ HVLK
Sbjct: 271 DPQKRPSAKHVLK 283
>pdb|3NYN|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYN|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Sangivamycin
pdb|3NYO|A Chain A, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
pdb|3NYO|B Chain B, Crystal Structure Of G Protein-Coupled Receptor Kinase 6
In Complex With Amp
Length = 576
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
D GLA + E GT+GY+ PE ++ T D ++ G +L E++ + P
Sbjct: 329 DLGLA--VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSP-- 384
Query: 362 PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATR 420
FQ+++ +K+K+++ + ++ V S+ + + + + +PA R
Sbjct: 385 --FQQRK---------KKIKREEVERLVK-EVPEEYSERFSPQARSLCSQLLCKDPAER 431
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 5/120 (4%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSL-GNLK 61
S+P+ G Q LYL +NQ+T P L L +L L N+ G +P + +L
Sbjct: 32 ASVPA--GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 62 GLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNML 121
L+ LDL +N L + L + NK T E+P+ + L L HL + +N L
Sbjct: 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQL 147
>pdb|3ZGW|A Chain A, Crystal Structure Of Maternal Embryonic Leucine Zipper
Kinase (melk) In Complex With Amp-pnp
Length = 347
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 79/191 (41%), Gaps = 27/191 (14%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHR--QFTAEMETLGKVKHQNLVLLLGYCSF 250
GGF V A + G+ VA+K + T G + E+E L ++HQ++ L
Sbjct: 21 GGFAKVKLACHILTGEMVAIKIMDK-NTLGSDLPRIKTEIEALKNLRHQHICQLYHVLET 79
Query: 251 DEEKLLVYEYMVNGSLDLWL----RNATGSHEVLDRAKRYKIACSSARGLAF-------- 298
+ +V EY G L ++ R + V+ R +A ++G A
Sbjct: 80 ANKIFMVLEYCPGGELFDYIISQDRLSEEETRVVFRQIVSAVAYVHSQGYAHRDLKPENL 139
Query: 299 ----LHQ----DFGL-ARLISACETHVSTDIAGTLGYIPPEYGQSRMST-TRGDVYSFGV 348
H+ DFGL A+ + H+ T G+L Y PE Q + + DV+S G+
Sbjct: 140 LFDEYHKLKLIDFGLCAKPKGNKDYHLQT-CCGSLAYAAPELIQGKSYLGSEADVWSMGI 198
Query: 349 ILLELVTAKEP 359
+L L+ P
Sbjct: 199 LLYVLMCGFLP 209
>pdb|4DFL|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A Sulfonamidopyrazine Piperidine Inhibitor
pdb|4DFN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
An Adamantylpyrazine Inhibitor
Length = 274
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 150 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 202
>pdb|4F4P|A Chain A, Syk In Complex With Ligand Lasw836
Length = 273
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 148 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 200
>pdb|3SRV|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 154 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 206
>pdb|1XBA|A Chain A, Crystal Structure Of Apo Syk Tyrosine Kinase Domain
pdb|1XBB|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Gleevec
pdb|1XBC|A Chain A, Crystal Structure Of The Syk Tyrosine Kinase Domain With
Staurosporin
pdb|3FQE|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
Ym193306
pdb|3FQH|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQH|B Chain B, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
A 2-Substituted 7-Azaindole
pdb|3FQS|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
R406
pdb|4FL1|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
pdb|4FYN|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
3-(8-{4-
[ethyl-(2-hydroxy-ethyl)-amino]-phenylamino}-imidazo[1,
2-a]pyrazin-5- Yl)-phenol
pdb|4FYO|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
N-{(s)-1-
[7-(3,4-dimethoxy-phenylamino)-thiazolo[5,
4-d]pyrimidin-5-yl]- Pyrrolidin-3-yl}-terephthalamic
Acid
pdb|4FZ6|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Complexed With
[6-((s)-2-
Methyl-pyrrolidin-1-yl)-pyridin-2-yl]-(6-phenyl-
imidazo[1,2- B]pyridazin-8-yl)-amine
Length = 291
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 160 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 212
>pdb|3EMG|A Chain A, Discovery And Sar Of Novel 4-Thiazolyl-2-
Phenylaminopyrimidines As Potent Inhibitors Of Spleen
Tyrosine Kinase (Syk)
Length = 291
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 168 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 220
>pdb|3TUB|A Chain A, Crystal Structure Of Syk Kinase Domain With 1-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-3-((1r,2s)-2-
Phenylcyclopropyl)urea
Length = 293
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 170 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 222
>pdb|3VF8|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Pyrazolylbenzimidazole Inhibitor 416
pdb|3VF9|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase Syk Catalytic
Domain With Thienopyrazolylindole Inhibitor 027
pdb|3TUC|A Chain A, Crystal Structure Of Syk Kinase Domain With
1-Benzyl-N-(5-(6,7-
Dimethoxyquinolin-4-Yloxy)pyridin-2-Yl)-2-Oxo-1,
2-Dihydropyridine-3- Carboxamide
pdb|3TUD|A Chain A, Crystal Structure Of Syk Kinase Domain With
N-(4-Methyl-3-(8-Methyl-7-
Oxo-2-(Phenylamino)-7,8-Dihydropyrido[2,
3-D]pyrimidin-6-Yl)phenyl)-3- (Trifluoromethyl)benzamide
Length = 299
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E + G + + PE +++ DV+SFGV++ E
Sbjct: 170 DFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 222
>pdb|3CKW|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24)
Length = 304
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
DFG+A ++ + +T GT ++ PE + ++ D++S G+ +EL EP
Sbjct: 147 DFGVAGQLTDTQIKRNT-FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARG-EPPH 204
Query: 362 PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRP 421
E + L+ K PT+ SKP+ C+ P+ RP
Sbjct: 205 SELHPMKVLFLI-------PKNNP-----PTLEGNYSKPLK----EFVEACLNKEPSFRP 248
Query: 422 TMLHVLK 428
T +LK
Sbjct: 249 TAKELLK 255
>pdb|4FL3|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 635
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 29/199 (14%)
Query: 185 LTLVDI-LEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR-----QFTAEMETLGKVKH 238
LTL D L G FGTV K K V K + + + AE + ++ +
Sbjct: 370 LTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDN 429
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--ATGSHEVLDRAKRYKIACSSARGL 296
+V ++G C E +LV E G L+ +L+ +++ + +
Sbjct: 430 PYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES 488
Query: 297 AFLHQD------------------FGLARLISACETHVSTDIAGT--LGYIPPEYGQSRM 336
F+H+D FGL++ + A E + G + + PE
Sbjct: 489 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK 548
Query: 337 STTRGDVYSFGVILLELVT 355
+++ DV+SFGV++ E +
Sbjct: 549 FSSKSDVWSFGVLMWEAFS 567
>pdb|3ZHP|C Chain C, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|D Chain D, Human Mst3 (stk24) In Complex With Mo25beta
Length = 294
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 18/127 (14%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
DFG+A ++ + +T GT ++ PE + ++ D++S G+ +EL EP
Sbjct: 167 DFGVAGQLTDTQIKRNT-FVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARG-EPPH 224
Query: 362 PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRP 421
E + L+ K PT+ SKP+ C+ P+ RP
Sbjct: 225 SELHPMKVLFLI-------PKNNP-----PTLEGNYSKPLK----EFVEACLNKEPSFRP 268
Query: 422 TMLHVLK 428
T +LK
Sbjct: 269 TAKELLK 275
>pdb|3TXO|A Chain A, Pkc Eta Kinase In Complex With A Naphthyridine
Length = 353
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 51/143 (35%), Gaps = 31/143 (21%)
Query: 247 YCSFD--EEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ--- 301
+C F + V E++ G L ++ + E RA+ Y SA L FLH
Sbjct: 90 FCCFQTPDRLFFVMEFVNGGDLMFHIQKSRRFDEA--RARFYAAEIISA--LMFLHDKGI 145
Query: 302 ---------------------DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTR 340
DFG+ + C + GT YI PE Q +
Sbjct: 146 IYRDLKLDNVLLDHEGHCKLADFGMCKE-GICNGVTTATFCGTPDYIAPEILQEMLYGPA 204
Query: 341 GDVYSFGVILLELVTAKEPTGPE 363
D ++ GV+L E++ P E
Sbjct: 205 VDWWAMGVLLYEMLCGHAPFEAE 227
>pdb|4FL2|A Chain A, Structural And Biophysical Characterization Of The Syk
Activation Switch
Length = 636
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 78/199 (39%), Gaps = 29/199 (14%)
Query: 185 LTLVDI-LEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR-----QFTAEMETLGKVKH 238
LTL D L G FGTV K K V K + + + AE + ++ +
Sbjct: 371 LTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDN 430
Query: 239 QNLVLLLGYCSFDEEKLLVYEYMVNGSLDLWLRN--ATGSHEVLDRAKRYKIACSSARGL 296
+V ++G C E +LV E G L+ +L+ +++ + +
Sbjct: 431 PYIVRMIGICE-AESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEES 489
Query: 297 AFLHQD------------------FGLARLISACETHVSTDIAGT--LGYIPPEYGQSRM 336
F+H+D FGL++ + A E + G + + PE
Sbjct: 490 NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYK 549
Query: 337 STTRGDVYSFGVILLELVT 355
+++ DV+SFGV++ E +
Sbjct: 550 FSSKSDVWSFGVLMWEAFS 568
>pdb|2JAM|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
pdb|2JAM|B Chain B, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase I G
Length = 304
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 37/223 (16%)
Query: 185 LTLVDILEDGGFGTVY--KATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLV 242
+++L G F V+ K L GK A+K ++ E+ L K+KH+N+V
Sbjct: 11 FIFMEVLGSGAFSEVFLVKQRL-TGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIV 69
Query: 243 LLLGYCSFDEEKLLVYEYMVNGSL-DLWLRNATGS--------HEVLDRAKRYKIACSSA 293
L LV + + G L D L + +VL K
Sbjct: 70 TLEDIYESTTHYYLVMQLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVH 129
Query: 294 RGLA--------------FLHQDFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTT 339
R L + DFGL+++ + + + GT GY+ PE + +
Sbjct: 130 RDLKPENLLYLTPEENSKIMITDFGLSKME---QNGIMSTACGTPGYVAPEVLAQKPYSK 186
Query: 340 RGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKK 382
D +S GVI L+ P E + K +F+K+K+
Sbjct: 187 AVDCWSIGVITYILLCGYPPFYEETESK--------LFEKIKE 221
>pdb|2GNG|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase
pdb|2GNH|A Chain A, Pka Five Fold Mutant Model Of Rho-Kinase With H1152p
pdb|2GNI|A Chain A, Pka Fivefold Mutant Model Of Rho-Kinase With Inhibitor
Fasudil (Ha1077)
Length = 350
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+A DFG A+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLLIDQQGYIKVA------------DFGFAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2GNF|A Chain A, Protein Kinase A Fivefold Mutant Model Of Rho-Kinase With
Y- 27632
Length = 350
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+A DFG A+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLLIDQQGYIKVA------------DFGFAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|2GNJ|A Chain A, Pka Three Fold Mutant Model Of Rho-Kinase With Y-27632
pdb|2GNL|A Chain A, Pka Threefold Mutant Model Of Rho-Kinase With Inhibitor H-
1152p
Length = 350
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+A DFG A+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLLIDQQGYIKVA------------DFGFAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3AMA|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Jnj- 7706621
pdb|3AMB|A Chain A, Protein Kinase A Sixfold Mutant Model Of Aurora B With
Inhibitor Vx- 680
Length = 351
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+A DFG A+ +
Sbjct: 152 VLTFEYL--HSLDLIYRDLKPENLLIDQQGYIKVA------------DFGFAKRVKGR-- 195
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 196 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
pdb|2I6L|B Chain B, Crystal Structure Of Human Mitogen Activated Protein
Kinase 6 (Mapk6)
Length = 320
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 75/202 (37%), Gaps = 39/202 (19%)
Query: 194 GGFGTVYKATLPD-GKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDE 252
GG G V+ A D K VA+KK Q + E++ + ++ H N+V +
Sbjct: 22 GGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSG 81
Query: 253 EKL---------LVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQ-- 301
+L L Y+V ++ L N +L+ R RGL ++H
Sbjct: 82 SQLTDDVGSLTELNSVYIVQEYMETDLANVLEQGPLLEEHARL-FMYQLLRGLKYIHSAN 140
Query: 302 -----------------------DFGLARLISACETHVSTDIAG--TLGYIPPEYGQSRM 336
DFGLAR++ +H G T Y P S
Sbjct: 141 VLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPN 200
Query: 337 STTRG-DVYSFGVILLELVTAK 357
+ T+ D+++ G I E++T K
Sbjct: 201 NYTKAIDMWAAGCIFAEMLTGK 222
>pdb|3SRV|A Chain A, Crystal Structure Of Spleen Tyrosine Kinase (Syk) In
Complex With A Diaminopyrimidine Carboxamide Inhibitor
Length = 277
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 302 DFGLARLISACETHVSTDIAGT--LGYIPPEYGQSRMSTTRGDVYSFGVILLE 352
DFGL++ + A E G + + PE +++ DV+SFGV++ E
Sbjct: 154 DFGLSKALRADENXYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 206
>pdb|4ALU|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 201 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 256
>pdb|4ALV|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
pdb|4ALW|A Chain A, Benzofuropyrimidinone Inhibitors Of Pim-1
Length = 328
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 201 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 256
>pdb|1XH9|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFGLA+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGLAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3CXW|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand I
pdb|3CY2|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Beta Carboline Ligand Ii
Length = 314
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 187 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 242
>pdb|2OBJ|A Chain A, Crystal Structure Of Human Pim-1 Kinase In Complex With
Inhibitor
pdb|3BGP|A Chain A, Human Pim-1 Complexed With A Benzoisoxazole Inhibitor Vx1
pdb|3BGQ|A Chain A, Human Pim-1 Kinase In Complex With An Triazolo Pyridazine
Inhibitor Vx2
pdb|3BGZ|A Chain A, Human Pim-1 Kinase In Complex With Diphenyl Indole
Inhibitor Vx3
Length = 333
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 206 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 261
>pdb|3DCV|A Chain A, Crystal Structure Of Human Pim1 Kinase Complexed With
4-(4-
Hydroxy-3-Methyl-Phenyl)-6-Phenylpyrimidin-2(1h)-One
pdb|3T9I|A Chain A, Pim1 Complexed With A Novel 3,6-Disubstituted Indole At
2.6 Ang Resolution
Length = 328
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 201 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 256
>pdb|1XWS|A Chain A, Crystal Structure Of The Human Pim1 Kinase Domain
Length = 313
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 186 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 241
>pdb|2BIL|B Chain B, The Human Protein Kinase Pim1 In Complex With Its
Consensus Peptide Pimtide
pdb|2BZJ|A Chain A, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru3
pdb|2BZK|B Chain B, Crystal Structure Of The Human Pim1 In Complex With Amppnp
And Pimtide
pdb|2C3I|B Chain B, Crystal Structure Of Human Pim1 In Complex With
Imidazopyridazin I
pdb|2BZH|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru1
pdb|2OI4|X Chain X, Crystal Structure Of Human Pim1 In Complex With
Fluorinated Ruthenium Pyridocarbazole
pdb|3BWF|A Chain A, Crystal Structure Of The Human Pim1 In Complex With An
Osmium Compound
Length = 313
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 186 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 241
>pdb|3CY3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And
The Jnk Inhibitor V
Length = 314
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 187 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 242
>pdb|2BIK|B Chain B, Human Pim1 Phosphorylated On Ser261
pdb|2BZI|B Chain B, Crystal Structure Of The Human Pim1 In Complex With A
Ruthenium Organometallic Ligand Ru2
Length = 313
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 186 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 241
>pdb|3A99|A Chain A, Structure Of Pim-1 Kinase Crystallized In The Presence Of
P27kip1 Carboxy-Terminal Peptide
Length = 320
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 193 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 248
>pdb|2HAK|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|C Chain C, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|D Chain D, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|E Chain E, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|F Chain F, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|G Chain G, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
pdb|2HAK|H Chain H, Catalytic And Ubiqutin-Associated Domains Of Mark1PAR-1
Length = 328
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 67/178 (37%), Gaps = 29/178 (16%)
Query: 207 GKTVAVKKF--SQAKTQGHRQFTAEMETLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNG 264
G+ VAVK +Q ++ E+ + + H N+V L ++ LV EY G
Sbjct: 40 GREVAVKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLVMEYASGG 99
Query: 265 SLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACETHVSTDI---- 320
+ +L E RAK +I + + + HQ + + R + A + D+
Sbjct: 100 EVFDYLVAHGRMKEKEARAKFRQIVSA----VQYCHQKYIVHRDLKAENLLLDGDMNIKI 155
Query: 321 ------------------AGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
G+ Y PE Q + DV+S GVIL LV+ P
Sbjct: 156 ADFGFSNEFTVGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLP 213
>pdb|1YHS|A Chain A, Crystal Structure Of Pim-1 Bound To Staurosporine
pdb|1YI3|A Chain A, Crystal Structure Of Pim-1 Bound To Ly294002
pdb|1YI4|A Chain A, Structure Of Pim-1 Bound To Adenosine
Length = 273
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 154 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 209
>pdb|4DTK|A Chain A, Novel And Selective Pan-Pim Kinase Inhibitor
Length = 276
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 157 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 212
>pdb|4A7C|A Chain A, Crystal Structure Of Pim1 Kinase With Etp46546
Length = 308
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 181 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 236
>pdb|3MA3|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Naphtho-Difuran Ligand
Length = 313
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 187 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 242
>pdb|3F2A|A Chain A, Crystal Structure Of Human Pim-1 In Complex With Dappa
Length = 300
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 173 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 228
>pdb|2J2I|B Chain B, Crystal Structure Of The Humab Pim1 In Complex With
Ly333531
Length = 312
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 186 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 241
>pdb|3JXW|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JY0|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
pdb|3JYA|A Chain A, Discovery Of 3h-Benzo[4,5]thieno[3,2-D]pyrimidin-4-Ones As
Potent, Highly Selective And Orally Bioavailable Pim
Kinases Inhibitors
Length = 294
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 159 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 214
>pdb|3JPV|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Pyrrolo[2,3- A]carbazole Ligand
pdb|3QF9|A Chain A, Crystal Structure Of Human Proto-Oncogene Serine Threonine
Kinase (Pim1) In Complex With A Consensus Peptide And A
Furan- Thiazolidinedione Ligand
pdb|4GW8|A Chain A, Human Proto-Oncogene Serine Threonine Kinase (Pim1) In
Complex With A Consensus Peptide And Leucettine L41
Length = 313
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 187 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 242
>pdb|3C4E|A Chain A, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|B Chain B, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|C Chain C, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
pdb|3C4E|D Chain D, Pim-1 Kinase Domain In Complex With 3-Aminophenyl-7-
Azaindole
Length = 273
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 154 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 209
>pdb|2XIY|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-2 From
Crystallographic Fragment Screen
pdb|2XIZ|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-3 From
Crystallographic Fragment Screen
pdb|2XJ1|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inibitor
pdb|2XJ2|A Chain A, Protein Kinase Pim-1 In Complex With Small Molecule
Inhibitor
Length = 301
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 174 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 229
>pdb|1YWV|A Chain A, Crystal Structures Of Proto-Oncogene Kinase Pim1: A Target
Of Aberrant Somatic Hypermutations In Diffuse Large Cell
Lymphoma
pdb|1YXT|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amppnp
pdb|1YXU|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|B Chain B, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|C Chain C, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXU|D Chain D, Crystal Structure Of Kinase Pim1 In Complex With Amp
pdb|1YXV|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
3,4-Dihydroxy-1- Methylquinolin-2(1h)-One
pdb|1YXX|A Chain A, Crystal Structure Of Kinase Pim1 In Complex With
(3e)-3-[(4- Hydroxyphenyl)imino]-1h-Indol-2(3h)-One
pdb|2O3P|A Chain A, Crystal Structure Of Pim1 With Quercetin
pdb|2O63|A Chain A, Crystal Structure Of Pim1 With Myricetin
pdb|2O64|A Chain A, Crystal Structure Of Pim1 With Quercetagetin
pdb|2O65|A Chain A, Crystal Structure Of Pim1 With Pentahydroxyflavone
Length = 293
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 158 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 213
>pdb|4AS0|A Chain A, Cyclometalated Phthalimides As Protein Kinase Inhibitors
Length = 273
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 154 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 209
>pdb|2XIX|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-1 From
Crystallographic Fragment Screen
Length = 301
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 174 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 229
>pdb|1XQZ|A Chain A, Crystal Structure Of Hpim-1 Kinase At 2.1 A Resolution
pdb|1XR1|A Chain A, Crystal Structure Of Hpim-1 Kinase In Complex With Amp-Pnp
At 2.1 A Resolution
Length = 300
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 173 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 228
>pdb|3UIX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Small
Molecule Inhibitor
pdb|3UMX|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indol-3-Yl)methylene]-7-(Azepan-1-Ylmethyl)-6-
Hydroxybenzofuran- 3(2h)-One
pdb|4ENX|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
Inhibitor (2e,5z)-2-
(2-Chlorophenylimino)-5-(4-Hydroxy-3-
Nitrobenzylidene)thiazolidin-4- One
pdb|4ENY|A Chain A, Crystal Structure Of Pim-1 Kinase In Complex With
(2e,5z)-2-(2-
Chlorophenylimino)-5-(4-Hydroxy-3-
Methoxybenzylidene)thiazolidin-4- One
pdb|3UMW|A Chain A, Crystal Structure Of Pim1 Kinase In Complex With Inhibitor
(Z)-2-[(1h-
Indazol-3-Yl)methylene]-6-Methoxy-7-(Piperazin-1-
Ylmethyl)benzofuran- 3(2h)-One
Length = 298
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 159 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 214
>pdb|3R00|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R01|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R02|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3R04|A Chain A, The Discovery Of Novel Benzofuran-2-Carboxylic Acids As
Potent Pim-1 Inhibitors
pdb|3VBQ|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBT|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBV|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBW|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBX|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VBY|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
pdb|3VC4|A Chain A, Exploitation Of Hydrogen Bonding Constraints And Flat
Hydrophobic Energy Landscapes In Pim-1 Kinase Needle
Screening And Inhibitor Design
Length = 299
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 159 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 214
>pdb|2XJ0|A Chain A, Protein Kinase Pim-1 In Complex With Fragment-4 From
Crystallographic Fragment Screen
Length = 301
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQ-SRMSTTRGDVYSFGVILLELVTAKEP 359
DFG L+ V TD GT Y PPE+ + R V+S G++L ++V P
Sbjct: 174 DFGSGALLKDT---VYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIP 229
>pdb|2PML|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp Analogue
pdb|2PMN|X Chain X, Crystal Structure Of Pfpk7 In Complex With An Atp-Site
Inhibitor
pdb|2PMO|X Chain X, Crystal Structure Of Pfpk7 In Complex With Hymenialdisine
Length = 348
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 39/209 (18%), Positives = 78/209 (37%), Gaps = 46/209 (22%)
Query: 187 LVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHRQFTA-----------------E 229
++ L G F + D K A+KK+ ++ + R FT E
Sbjct: 35 IIRTLNQGKFNKIILCE-KDNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNE 93
Query: 230 METLGKVKHQNLVLLLGYCSFDEEKLLVYEYMVNGSL---DLWLRNATGSHEVLDRAKRY 286
++ + +K++ + G + +E ++YEYM N S+ D + ++ +
Sbjct: 94 LQIITDIKNEYCLTCEGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVI 153
Query: 287 KIACSSA-RGLAFLHQD-----------------FGLARLISACETHVSTDIA-----GT 323
K S +++H + G +L E+ D GT
Sbjct: 154 KCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKGSRGT 213
Query: 324 LGYIPPEY--GQSRMSTTRGDVYSFGVIL 350
++PPE+ +S + + D++S G+ L
Sbjct: 214 YEFMPPEFFSNESSYNGAKVDIWSLGICL 242
>pdb|3LL6|A Chain A, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
pdb|3LL6|B Chain B, Crystal Structure Of The Human Cyclin G Associated Kinase
(gak)
Length = 337
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Query: 183 LKLTLVDILEDGGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVK-HQN 240
L+L + +L +GGF VY+A + G+ A+K+ + + +R E+ + K+ H N
Sbjct: 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPN 87
Query: 241 LVLLLGYCSFDEEK 254
+V S +E+
Sbjct: 88 IVQFCSAASIGKEE 101
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 132 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3A7F|A Chain A, Human Mst3 Kinase
pdb|3A7G|A Chain A, Human Mst3 Kinase
pdb|3A7G|B Chain B, Human Mst3 Kinase
pdb|3A7H|A Chain A, Human Mst3 Kinase In Complex With Atp
pdb|3A7H|B Chain B, Human Mst3 Kinase In Complex With Atp
pdb|3A7I|A Chain A, Human Mst3 Kinase In Complex With Adenine
pdb|3A7J|A Chain A, Human Mst3 Kinase In Complex With Mnadp
Length = 303
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 61/272 (22%), Positives = 97/272 (35%), Gaps = 53/272 (19%)
Query: 185 LTLVDILEDGGFGTVYKATLPDGKT---VAVKKFS-QAKTQGHRQFTAEMETLGKVKHQN 240
T ++ + G FG V+K D +T VA+K + E+ L +
Sbjct: 24 FTKLEKIGKGSFGEVFKGI--DNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPY 81
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGS-LDLWLRNATGSHEVLDRAKRYKIACSSARGLAFL 299
+ G D + ++ EY+ GS LDL LD + I +GL +L
Sbjct: 82 VTKYYGSYLKDTKLWIIMEYLGGGSALDLLEPGP------LDETQIATILREILKGLDYL 135
Query: 300 HQDFGLARLISACETHVS----------------TD-------IAGTLGYIPPEYGQSRM 336
H + + R I A +S TD GT ++ PE +
Sbjct: 136 HSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSA 195
Query: 337 STTRGDVYSFGVILLELVTAKEPTGPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNA 396
++ D++S G+ +EL EP E + L+ K PT+
Sbjct: 196 YDSKADIWSLGITAIELARG-EPPHSELHPMKVLFLI-------PKNNP-----PTLEGN 242
Query: 397 GSKPMMLKMLRIAADCVADNPATRPTMLHVLK 428
SKP+ C+ P+ RPT +LK
Sbjct: 243 YSKPLK----EFVEACLNKEPSFRPTAKELLK 270
>pdb|3CKX|A Chain A, Crystal Structure Of Sterile 20-Like Kinase 3 (Mst3,
Stk24) In Complex With Staurosporine
Length = 304
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 20/128 (15%)
Query: 302 DFGLARLISACETHVSTD-IAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPT 360
DFG+A ++ +T + + GT ++ PE + ++ D++S G+ +EL EP
Sbjct: 147 DFGVAGQLT--DTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARG-EPP 203
Query: 361 GPEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATR 420
E + L+ K PT+ SKP+ C+ P+ R
Sbjct: 204 HSELHPMKVLFLI-------PKNNP-----PTLEGNYSKPLK----EFVEACLNKEPSFR 247
Query: 421 PTMLHVLK 428
PT +LK
Sbjct: 248 PTAKELLK 255
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 183
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 133 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 5 IPSEFGDSLK-LQGLYLGNNQLTGSIPRSL-GQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
+PS D L+ L+ + G+N+L +PR + G++ L +LNL N+ L
Sbjct: 161 MPSHLFDDLENLESIEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTS 219
Query: 63 LSHLDLSSNFFDGGWPR 79
L + L +N +D PR
Sbjct: 220 LQKIWLHTNPWDCSCPR 236
>pdb|3FHI|A Chain A, Crystal Structure Of A Complex Between The Catalytic And
Regulatory (Ri{alpha}) Subunits Of Pka
Length = 350
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ ++ DFG A+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLLIDQQGYIQVT------------DFGFAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ +AGT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLAGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 130 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 130 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 155 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 6 PSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSH 65
P F +L L L NNQLT +L L +L+L N+ + NLK L+H
Sbjct: 55 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 114
Query: 66 LDLSSNFFD 74
+ L +N +D
Sbjct: 115 IWLLNNPWD 123
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 28/118 (23%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
S+P+ G Q LYL +NQ+T P +L L +L+L N+ +
Sbjct: 30 ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV----------- 76
Query: 63 LSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQN-LGNLAQLEHLDVLRN 119
L + FD L+ T L L+DN+ + IP+ NL L H+ +L N
Sbjct: 77 -----LPAGVFD--------KLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 120
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 6 PSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSH 65
P F +L L L NNQLT +L L +L+L N+ + NLK L+H
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTH 106
Query: 66 LDLSSNFFD 74
+ L +N +D
Sbjct: 107 IWLLNNPWD 115
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 28/118 (23%)
Query: 3 GSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKG 62
S+P+ G Q LYL +NQ+T P +L L +L+L N+ +
Sbjct: 22 ASVPT--GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV----------- 68
Query: 63 LSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQN-LGNLAQLEHLDVLRN 119
L + FD L+ T L L+DN+ + IP+ NL L H+ +L N
Sbjct: 69 -----LPAGVFD--------KLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIWLLNN 112
>pdb|2JDT|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
Isoquinoline-5- Sulfonic Acid (2-(2-(4-Chlorobenzyloxy)
Ethylamino)ethyl) Amide
pdb|2JDV|A Chain A, Structure Of Pka-Pkb Chimera Complexed With A-443654
pdb|2UVX|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 7-Azaindole
pdb|2UW4|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
2-(4-(5-Methyl- 1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW7|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-Chloro-
Phenyl)-4-(4-(1h-Pyrazol-4-Yl)-Phenyl)-Piperidine
pdb|4AXA|A Chain A, Structure Of Pka-pkb Chimera Complexed With
(1s)-2-amino-1-(
4-chlorophenyl)-1-(4-(1h-pyrazol-4-yl)phenyl)ethan-1-ol
Length = 351
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFG A+ +
Sbjct: 152 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGFAKRVKGR-- 195
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 196 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
>pdb|2VO0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
Length = 351
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFG A+ +
Sbjct: 152 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGFAKRVKGR-- 195
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 196 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|2UVY|A Chain A, Structure Of Pka-pkb Chimera Complexed With Methyl-(4-(9h-
Purin-6-yl)-benzyl)-amine
pdb|2UVZ|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
C-Phenyl-C-(4-( 9h-Purin-6-Yl)-Phenyl)-Methylamine
pdb|2UW0|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 6-(4-(4-(4-
Chloro-Phenyl)-Piperidin-4-Yl)-Phenyl)-9h-Purine
pdb|2UW3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 5-Methyl-4-
Phenyl-1h-Pyrazole
pdb|2UW5|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (R)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With (S)-2-(4-
Chloro-Phenyl)-2-(4-1h-Pyrazol-4-Yl)-Phenyl)-Ethylamine
pdb|2UW8|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 2-(4-Chloro-
Phenyl)-2-Phenyl-Ethylamine
pdb|2VNW|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)methanamine
pdb|2VNY|A Chain A, Structure Of Pka-Pkb Chimera Complexed With
(1-(9h-Purin-6- Yl)piperidin-4-Yl)amine
pdb|2VO3|A Chain A, Structure Of Pka-Pkb Chimera Complexed With C-(4-(4-
Chlorophenyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Yl)methylamine
pdb|2VO6|A Chain A, Structure Of Pka-Pkb Chimera Complexed With 4-(4-
Chlorobenzyl)-1-(7h-Pyrrolo(2,
3-D)pyrimidin-4-Yl)piperidin- 4-Ylamine
Length = 351
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFG A+ +
Sbjct: 152 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGFAKRVKGR-- 195
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 196 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 10/118 (8%)
Query: 13 LKLQGLYL--GNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSS 70
L LQG + GN Q T S+ ++LG+L LV L+ S + +LK ++H+DLS
Sbjct: 454 LNLQGNHFPKGNIQKTNSL-QTLGRLEILV---LSFCDLSSIDQHAFTSLKMMNHVDLSH 509
Query: 71 NFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRNML---CGKI 125
N +L +L YL+L N + +P L L+Q +++ +N L C I
Sbjct: 510 NRLTSSSIEALSHLK-GIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 15 LQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNF-- 72
LQ L L L+ +P L L L KL L+ NKF S N L+HL + N
Sbjct: 280 LQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338
Query: 73 --FDGGWPRSLGNLSYSTYLDL-HDNKFTREIPQ-NLGNLAQLEHLDVLRN 119
G +L NL LDL HD+ T + L NL+ L+ L++ N
Sbjct: 339 LELGTGCLENLENLR---ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386
>pdb|3L9M|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9M|B Chain B, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 18
pdb|3L9N|A Chain A, Crystal Structure Of Pkab3 (Pka Triple Mutant V123a,
L173m, Q181k) With Compound 27
Length = 351
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFG A+ +
Sbjct: 152 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGFAKRVKGR-- 195
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 196 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 238
>pdb|1Q61|A Chain A, Pka Triple Mutant Model Of Pkb
Length = 350
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFG A+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGFAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 160
>pdb|1SZM|A Chain A, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
pdb|1SZM|B Chain B, Dual Binding Mode Of Bisindolylmaleimide 2 To Protein
Kinase A (Pka)
Length = 350
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ K+ DFG A+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIKVT------------DFGFAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 33 LGQLGGLVKLNLTRNKF-SGPVPTSLGNLKGLSHLDLSSN 71
+G L L +LN+ N S +P NL L HLDLSSN
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 161
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
>pdb|4DFY|A Chain A, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
pdb|4DFY|E Chain E, Crystal Structure Of R194a Mutant Of Camp-Dependent
Protein Kinase With Unphosphorylated Activation Loop
Length = 371
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 45/105 (42%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ ++ DFG A+ +
Sbjct: 172 VLTFEYL--HSLDLIYRDLKPENLLIDQQGYIQVT------------DFGFAKRVKGA-- 215
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 216 --TWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 258
>pdb|3MI9|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Human P-Tefb
pdb|3MIA|A Chain A, Crystal Structure Of Hiv-1 Tat Complexed With Atp-Bound
Human P-Tefb
Length = 351
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYC 248
G FG V+KA G+ VA+KK + TA E++ L +KH+N+V L+ C
Sbjct: 28 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEIC 85
>pdb|4BCF|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYC 248
G FG V+KA G+ VA+KK + TA E++ L +KH+N+V L+ C
Sbjct: 29 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEIC 86
>pdb|1SMH|A Chain A, Protein Kinase A Variant Complex With Completely Ordered
N- Terminal Helix
pdb|1XHA|A Chain A, Crystal Structures Of Protein Kinase B Selective
Inhibitors In Complex With Protein Kinase A And Mutants
Length = 350
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 255 LLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIACSSARGLAFLHQDFGLARLISACET 314
+L +EY+ SLDL R+ + ++D+ ++ DFGLA+ +
Sbjct: 151 VLTFEYL--HSLDLIYRDLKPENLMIDQQGYIQVT------------DFGLAKRVKGR-- 194
Query: 315 HVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + GT Y+ PE S+ D ++ GV++ E+ P
Sbjct: 195 --TWXLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEMAAGYPP 237
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 6 PSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSH 65
P F +L L L NNQLT +L L +L+L N+ + NL+ L+H
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLRSLTH 106
Query: 66 LDLSSNFFD 74
+ L +N +D
Sbjct: 107 IWLLNNPWD 115
>pdb|3BLH|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1
pdb|3BLQ|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
ATP
pdb|3BLR|A Chain A, Crystal Structure Of Human Cdk9CYCLINT1 IN COMPLEX WITH
Flavopiridol
pdb|3MY1|A Chain A, Structure Of Cdk9CYCLINT1 IN COMPLEX WITH DRB
pdb|3LQ5|A Chain A, Structure Of Cdk9CYCLINT IN COMPLEX WITH S-Cr8
pdb|3TN8|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNH|A Chain A, Cdk9CYCLIN T IN COMPLEX WITH CAN508
pdb|3TNI|A Chain A, Structure Of Cdk9CYCLIN T F241L
pdb|4BCH|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCI|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
pdb|4BCJ|A Chain A, Structure Of Cdk9 In Complex With Cyclin T And A
2-amino-4- Heteroaryl-pyrimidine Inhibitor
Length = 331
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYC 248
G FG V+KA G+ VA+KK + TA E++ L +KH+N+V L+ C
Sbjct: 29 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEIC 86
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 153 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 153 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ S VP L L L +L LS N
Sbjct: 153 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 1 LTGSIPSEFGDSLKLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSL-GN 59
L S+ S F D L+ L L N++ + L L+KLNL++N F G + + + N
Sbjct: 290 LLKSVFSHFTD---LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFEN 345
Query: 60 LKGLSHLDLSSNFFDGGWPRSLGNLSY 86
L L LDLS N R+LG+ S+
Sbjct: 346 LDKLEVLDLSYNHI-----RALGDQSF 367
>pdb|4EC8|A Chain A, Structure Of Full Length Cdk9 In Complex With Cyclint And
Drb
pdb|4EC9|A Chain A, Crystal Structure Of Full-Length Cdk9 In Complex With
Cyclin T
Length = 373
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 194 GGFGTVYKAT-LPDGKTVAVKKFSQAKTQGHRQFTA--EMETLGKVKHQNLVLLLGYC 248
G FG V+KA G+ VA+KK + TA E++ L +KH+N+V L+ C
Sbjct: 29 GTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEIC 86
>pdb|2QNJ|A Chain A, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
pdb|2QNJ|B Chain B, Kinase And Ubiquitin-Associated Domains Of Mark3PAR-1
Length = 328
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 73/198 (36%), Gaps = 28/198 (14%)
Query: 187 LVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLGKVKHQNLVL 243
L+ + G F V A + G+ VA+K +Q ++ E+ + + H N+V
Sbjct: 16 LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVK 75
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAF 298
L ++ L+ EY G + +L E R+K +I C R
Sbjct: 76 LFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKR---I 132
Query: 299 LHQDFGLARLISACETHVST----------------DIAGTLGYIPPEYGQ-SRMSTTRG 341
+H+D L+ + ++ G+ Y PE Q +
Sbjct: 133 VHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDTFCGSPPYAAPELFQGKKYDGPEV 192
Query: 342 DVYSFGVILLELVTAKEP 359
DV+S GVIL LV+ P
Sbjct: 193 DVWSLGVILYTLVSGSLP 210
>pdb|3FR7|A Chain A, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+
pdb|3FR7|B Chain B, Ketol-Acid Reductoisomerase (Kari) In Complex With Mg2+
pdb|3FR8|A Chain A, Rice Ketolacid Reductoisomerase In Complex With Mg2+-Nadph
pdb|3FR8|B Chain B, Rice Ketolacid Reductoisomerase In Complex With Mg2+-Nadph
Length = 525
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 50/113 (44%), Gaps = 20/113 (17%)
Query: 146 NLSKISLAGNKDY------NLY-LSSSRSKGPLRINISMF--QQPLLKLTLVDILEDGGF 196
N K+SLAG+++Y NL+ L KG +I + + Q P L D L +
Sbjct: 23 NKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKS 82
Query: 197 GTVYKATLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGK----VKHQNLVLLL 245
V K L G K F +A+ G FT E TLG V +LVLLL
Sbjct: 83 DIVVKIGLRKGS----KSFDEARAAG---FTEESGTLGDIWETVSGSDLVLLL 128
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 184 KLTLVDILEDGGFGTVYKA---TLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQN 240
+ +V +L G FG V K V V + AK + E+E L K+ H N
Sbjct: 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN 82
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSL--DLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
++ L +V E G L ++ R H D A+ K S G+ +
Sbjct: 83 IMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEH---DAARIIKQVFS---GITY 136
Query: 299 LHQ---------------------------DFGLARLISACETHVSTDIAGTLGYIPPEY 331
+H+ DFGL+ + D GT YI PE
Sbjct: 137 MHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ--QNTKMKDRIGTAYYIAPEV 194
Query: 332 GQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + DV+S GVIL L++ P
Sbjct: 195 LRGTYD-EKCDVWSAGVILYILLSGTPP 221
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 75/210 (35%), Gaps = 45/210 (21%)
Query: 184 KLTLVDILEDGGFGTVYKA---TLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQN 240
+ +V +L G FG V K V V + AK + E+E L K+ H N
Sbjct: 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN 82
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSL--DLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
++ L +V E G L ++ R H D A+ K S G+ +
Sbjct: 83 IMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEH---DAARIIKQVFS---GITY 136
Query: 299 LHQ---------------------------DFGLARLISAC--ETHVSTDIAGTLGYIPP 329
+H+ DFGL S C + D GT YI P
Sbjct: 137 MHKHNIVHRDLKPENILLESKEKDCDIKIIDFGL----STCFQQNTKMKDRIGTAYYIAP 192
Query: 330 EYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
E + + DV+S GVIL L++ P
Sbjct: 193 EVLRGTYD-EKCDVWSAGVILYILLSGTPP 221
>pdb|3FE3|A Chain A, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
pdb|3FE3|B Chain B, Crystal Structure Of The Kinase Mark3PAR-1: T211a-S215a
Double Mutant
Length = 328
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 75/198 (37%), Gaps = 28/198 (14%)
Query: 187 LVDILEDGGFGTVYKAT-LPDGKTVAVKKF--SQAKTQGHRQFTAEMETLGKVKHQNLVL 243
L+ + G F V A + G+ VA+K +Q ++ E+ + + H N+V
Sbjct: 19 LLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVK 78
Query: 244 LLGYCSFDEEKLLVYEYMVNGSLDLWLRNATGSHEVLDRAKRYKIA-----CSSARGLAF 298
L ++ L+ EY G + +L E R+K +I C R
Sbjct: 79 LFEVIETEKTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKR---I 135
Query: 299 LHQDFGLARLISACETHVSTDIAG-----TLG-----------YIPPEYGQ-SRMSTTRG 341
+H+D L+ + ++ G T+G Y PE Q +
Sbjct: 136 VHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEV 195
Query: 342 DVYSFGVILLELVTAKEP 359
DV+S GVIL LV+ P
Sbjct: 196 DVWSLGVILYTLVSGSLP 213
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 74/208 (35%), Gaps = 41/208 (19%)
Query: 184 KLTLVDILEDGGFGTVYKA---TLPDGKTVAVKKFSQAKTQGHRQFTAEMETLGKVKHQN 240
+ +V +L G FG V K V V + AK + E+E L K+ H N
Sbjct: 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPN 82
Query: 241 LVLLLGYCSFDEEKLLVYEYMVNGSL--DLWLRNATGSHEVLDRAKRYKIACSSARGLAF 298
++ L +V E G L ++ R H D A+ K S G+ +
Sbjct: 83 IMKLFEILEDSSSFYIVGELYTGGELFDEIIKRKRFSEH---DAARIIKQVFS---GITY 136
Query: 299 LHQ---------------------------DFGLARLISACETHVSTDIAGTLGYIPPEY 331
+H+ DFGL+ + D GT YI PE
Sbjct: 137 MHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ--QNTKMKDRIGTAYYIAPEV 194
Query: 332 GQSRMSTTRGDVYSFGVILLELVTAKEP 359
+ + DV+S GVIL L++ P
Sbjct: 195 LRGTYD-EKCDVWSAGVILYILLSGTPP 221
>pdb|2JC6|A Chain A, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
pdb|2JC6|C Chain C, Crystal Structure Of Human Calmodulin-Dependent Protein
Kinase 1d
Length = 334
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP 359
DFGL+++ + V + GT GY+ PE + + D +S GVI L+ P
Sbjct: 166 DFGLSKMEGKGD--VMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVIAYILLCGYPP 221
>pdb|2GIA|B Chain B, Crystal Structures Of Trypanosoma Bruciei Mrp1MRP2
pdb|2GIA|D Chain D, Crystal Structures Of Trypanosoma Bruciei Mrp1MRP2
Length = 187
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 13/78 (16%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR---------QFTAEM 230
Q L K + D+ +D GT+ + + DGK + + ++ Q G R QF A+
Sbjct: 8 QSLPKFEIHDVRDDPAEGTMTRVAV-DGKLLLISQYPQL---GPRKVDPNDLSPQFDADR 63
Query: 231 ETLGKVKHQNLVLLLGYC 248
+++H +L L+G C
Sbjct: 64 RISVRLRHVDLAYLVGVC 81
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 35/91 (38%)
Query: 31 RSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSNFFDGGWPRSLGNLSYSTYL 90
R L L LNL NK + + L L L+LS N + + L Y+
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI 343
Query: 91 DLHDNKFTREIPQNLGNLAQLEHLDVLRNML 121
DL N Q L +L+ LD+ N L
Sbjct: 344 DLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374
>pdb|2LW4|A Chain A, Solution Nmr Structure Of Human Transcription Elongation
Factor A Protein 2, Central Domain, Northeast Structural
Genomics Consortium (Nesg) Target Hr8682b
Length = 113
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 94 DNKFTREIPQNLGNLAQLEHLDVLRNMLCGKI-PEKICKSRLEGLVS 139
D K+ + + NL ++ D+ RN+LCG I P++I E + S
Sbjct: 56 DMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMAS 102
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 4 SIPSEFGDSLKLQGLYLGNNQLT----GSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGN 59
SIPS G + ++ L L N++T G + R+ L L+ + N G SLG+
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGS 101
Query: 60 LKGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRN 119
L+ HLDLS N G LS YL+L N + Q LG + +L L+
Sbjct: 102 LE---HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTNLQT 153
Query: 120 MLCGKI 125
+ G +
Sbjct: 154 LRIGNV 159
>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In
Complex With Ca2+ And Amppnp
Length = 494
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 58/123 (47%), Gaps = 18/123 (14%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
DFGL+ + + + GT YI PE + + + DV+S GVIL L+ P G
Sbjct: 182 DFGLSAVFENQKKM--KERLGTAYYIAPEVLRKKYDE-KCDVWSIGVILFILLAGYPPFG 238
Query: 362 PEFQEKEGANLVGWVFQKMKK-QQADDVLDPTVLNAGSKPMMLKML------RIAADCVA 414
+ ++ + +K++K + D + ++ G+K ++ +ML RI+A
Sbjct: 239 GQTDQE--------ILRKVEKGKYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQAL 290
Query: 415 DNP 417
++P
Sbjct: 291 EHP 293
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 15/126 (11%)
Query: 4 SIPSEFGDSLKLQGLYLGNNQLT----GSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGN 59
SIPS G + ++ L L N++T G + R+ L L+ + N G SLG+
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGS 75
Query: 60 LKGLSHLDLSSNFFDGGWPRSLGNLSYSTYLDLHDNKFTREIPQNLGNLAQLEHLDVLRN 119
L+ HLDLS N G LS YL+L N + Q LG + +L L+
Sbjct: 76 LE---HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY-----QTLGVTSLFPNLTNLQT 127
Query: 120 MLCGKI 125
+ G +
Sbjct: 128 LRIGNV 133
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 14 KLQGLYLGNNQLTGSIPRSLGQLGGLVKLNLTRNKFSGPVPTSLGNLKGLSHLDLSSN 71
+L+ LYLGNN++T L +L L L+L N+ VP L L L +L LS N
Sbjct: 133 QLESLYLGNNKITDIT--VLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
>pdb|2GID|B Chain B, Crystal Structures Of Trypanosoma Bruciei Mrp1/mrp2
pdb|2GID|D Chain D, Crystal Structures Of Trypanosoma Bruciei Mrp1/mrp2
pdb|2GID|K Chain K, Crystal Structures Of Trypanosoma Bruciei Mrp1/mrp2
pdb|2GID|J Chain J, Crystal Structures Of Trypanosoma Bruciei Mrp1/mrp2
pdb|2GJE|D Chain D, Structure Of A Guiderna-Binding Protein Complex Bound To A
Grna
Length = 187
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 36/78 (46%), Gaps = 13/78 (16%)
Query: 180 QPLLKLTLVDILEDGGFGTVYKATLPDGKTVAVKKFSQAKTQGHR---------QFTAEM 230
Q L K + D+ +D GT + + DGK + + ++ Q G R QF A+
Sbjct: 8 QSLPKFEIHDVRDDPAEGTXTRVAV-DGKLLLISQYPQL---GPRKVDPNDLSPQFDADR 63
Query: 231 ETLGKVKHQNLVLLLGYC 248
+++H +L L+G C
Sbjct: 64 RISVRLRHVDLAYLVGVC 81
>pdb|2XIK|A Chain A, Structure Of Human Ysk1 (Yeast Sps1-Ste20-Related Kinase
1)
Length = 294
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 48/127 (37%), Gaps = 18/127 (14%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEPTG 361
DFG+A ++ + + GT ++ PE + + D++S G+ +EL EP
Sbjct: 159 DFGVAGQLTDTQIKRNX-FVGTPFWMAPEVIKQSAYDFKADIWSLGITAIELAKG-EPPN 216
Query: 362 PEFQEKEGANLVGWVFQKMKKQQADDVLDPTVLNAGSKPMMLKMLRIAADCVADNPATRP 421
+ L+ K PT+ SKP C+ +P RP
Sbjct: 217 SDLHPMRVLFLI-------PKNSP-----PTLEGQHSKPFK----EFVEACLNKDPRFRP 260
Query: 422 TMLHVLK 428
T +LK
Sbjct: 261 TAKELLK 267
>pdb|2QR8|A Chain A, 2.0a X-ray Structure Of C-terminal Kinase Domain Of P90
Ribosomal S6 Kinase 2 (rsk2)
pdb|4D9U|A Chain A, Rsk2 C-Terminal Kinase Domain, (E)-Tert-Butyl
3-(4-Amino-7-(3-
Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
pdb|4D9T|A Chain A, Rsk2 C-Terminal Kinase Domain With Inhibitor (E)-Methyl
3-(4-Amino-7-
(3-Hydroxypropyl)-5-P-Tolyl-7h-Pyrrolo[2,
3-D]pyrimidin-6-Yl)-2- Cyanoacrylate
Length = 342
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Query: 302 DFGLARLISACETHVSTDIAGTLGYIPPEYGQSRMSTTRGDVYSFGVILLELVTAKEP-- 359
DFG A+ + A E + T ++ PE + + D++S GV+L ++T P
Sbjct: 163 DFGFAKQLRA-ENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFA 221
Query: 360 TGPEFQEKEGANLVG 374
GP+ +E +G
Sbjct: 222 NGPDDTPEEILARIG 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,908,535
Number of Sequences: 62578
Number of extensions: 543712
Number of successful extensions: 2503
Number of sequences better than 100.0: 734
Number of HSP's better than 100.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 385
Number of HSP's that attempted gapping in prelim test: 1440
Number of HSP's gapped (non-prelim): 842
length of query: 435
length of database: 14,973,337
effective HSP length: 102
effective length of query: 333
effective length of database: 8,590,381
effective search space: 2860596873
effective search space used: 2860596873
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)