BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040642
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3K25|A Chain A, Crystal Structure Of Slr1438 Protein From Synechocystis
           Sp. Pcc 6803, Northeast Structural Genomics Consortium
           Target Sgr112
 pdb|3K25|B Chain B, Crystal Structure Of Slr1438 Protein From Synechocystis
           Sp. Pcc 6803, Northeast Structural Genomics Consortium
           Target Sgr112
          Length = 289

 Score = 28.1 bits (61), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 8/50 (16%)

Query: 161 TMARPSNEEPSQQVEKSFGFDGQMNMEAMQKQQWLVDLMST---PPQQHF 207
           T+A P+N+   Q+     G+DGQ+N+ + +     +DL  T    P+ HF
Sbjct: 176 TLAIPANDYLDQKTGDCHGYDGQLNLTSPE-----LDLAFTQISQPRAHF 220


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,840,505
Number of Sequences: 62578
Number of extensions: 203817
Number of successful extensions: 405
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 4
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)