Query 040642
Match_columns 233
No_of_seqs 183 out of 1511
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:41:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040642.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040642hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 2.9E-36 1E-40 216.5 -0.7 78 2-81 1-78 (90)
2 1egw_A MADS box transcription 100.0 2.3E-35 7.9E-40 206.9 -0.0 73 2-76 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 3.3E-34 1.1E-38 209.2 -0.5 76 1-78 16-91 (100)
4 1hbx_A SRF, serum response fac 100.0 1.9E-33 6.6E-38 202.6 -0.7 71 1-73 10-80 (92)
5 1k6o_B SRF, serum response fac 100.0 6.7E-33 2.3E-37 203.6 -0.4 71 1-73 9-79 (103)
6 1deq_A Fibrinogen (alpha chain 82.3 9.1 0.00031 33.7 9.7 40 28-72 23-62 (390)
7 1j1d_C Troponin I, TNI; THIN f 74.3 25 0.00085 26.3 9.8 57 94-152 24-80 (133)
8 1j1e_C Troponin I, TNI; THIN f 64.9 45 0.0015 26.2 8.8 57 94-152 24-80 (180)
9 1p9i_A Cortexillin I/GCN4 hybr 61.5 12 0.00041 20.0 3.3 27 133-159 2-28 (31)
10 3nrf_A APAG protein; structura 52.6 3.7 0.00013 29.5 0.5 50 11-69 21-70 (106)
11 3twe_A Alpha4H; unknown functi 46.6 30 0.001 17.8 3.4 19 89-107 5-23 (27)
12 2l5g_B Putative uncharacterize 44.3 29 0.00099 20.5 3.4 30 130-159 2-31 (42)
13 1m1j_A Fibrinogen alpha subuni 42.0 2E+02 0.0067 26.0 10.4 29 39-72 32-60 (491)
14 1fxk_A Prefoldin; archaeal pro 40.2 89 0.003 21.5 7.1 12 63-74 2-13 (107)
15 3efg_A Protein SLYX homolog; x 37.7 25 0.00084 23.7 2.8 17 89-105 11-27 (78)
16 2wvr_A Geminin; DNA replicatio 36.2 45 0.0015 26.7 4.5 23 88-110 118-140 (209)
17 3ghg_A Fibrinogen alpha chain; 35.9 75 0.0026 29.2 6.4 14 58-71 45-58 (562)
18 1ytz_I Troponin I; muscle, THI 34.2 1.7E+02 0.0057 22.9 9.6 56 94-152 22-77 (182)
19 2zvv_Y Cyclin-dependent kinase 33.3 9.9 0.00034 19.8 0.2 12 15-26 15-26 (26)
20 2p63_A Cell division control p 31.0 35 0.0012 21.2 2.4 29 113-147 26-54 (56)
21 3tso_C RAB11 family-interactin 29.5 1.2E+02 0.0041 20.2 5.0 32 127-158 11-42 (75)
22 1dd4_C 50S ribosomal protein L 28.7 34 0.0011 20.0 2.0 20 127-146 10-29 (40)
23 2ky6_A Mediator of RNA polymer 27.1 29 0.00099 26.9 1.9 26 36-61 116-142 (166)
24 1j1d_B Troponin T, TNT; THIN f 25.1 83 0.0028 22.4 3.9 27 126-152 38-64 (106)
25 2ygg_A Sodium/hydrogen exchang 23.8 1.2E+02 0.0039 20.0 4.1 28 129-156 3-30 (70)
26 3rmq_A Uncharacterized protein 23.6 19 0.00064 26.1 0.2 16 33-48 30-45 (116)
27 1m1j_C Fibrinogen gamma chain; 22.4 2.4E+02 0.0083 24.9 7.3 20 54-73 15-34 (409)
28 2k1v_A Insulin-like peptide IN 21.6 24 0.00082 18.6 0.4 9 32-40 14-22 (26)
29 3ghg_C Fibrinogen gamma chain; 21.4 4.3E+02 0.015 23.4 8.9 31 131-161 106-136 (411)
30 2zqm_A Prefoldin beta subunit 20.9 2.1E+02 0.0073 19.7 6.7 12 62-73 6-17 (117)
31 3ghg_A Fibrinogen alpha chain; 20.6 3.7E+02 0.013 24.7 8.1 18 129-146 172-189 (562)
32 2oqq_A Transcription factor HY 20.3 1.4E+02 0.0049 17.5 4.1 30 132-161 5-34 (42)
33 4gfh_A DNA topoisomerase 2; to 20.2 2.3E+02 0.0078 28.8 7.4 43 26-74 958-1000(1177)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=2.9e-36 Score=216.52 Aligned_cols=78 Identities=33% Similarity=0.587 Sum_probs=72.3
Q ss_pred CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhhhhh
Q 040642 2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEMEKSK 81 (233)
Q Consensus 2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~~~k 81 (233)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+|||||+|++++ |+| ++|+.||+||+..++....+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~-f~s-~~~~~il~rY~~~~~~~~~~ 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNEPHESR 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHCCSCCCEE
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEE-eCC-CCHHHHHHHHHhcCcccccC
Confidence 8999999999999999999999999999999999999999999999999999887 666 68999999999987765444
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.3e-35 Score=206.89 Aligned_cols=73 Identities=34% Similarity=0.608 Sum_probs=67.7
Q ss_pred CCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChh
Q 040642 2 TRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPE 76 (233)
Q Consensus 2 gR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~ 76 (233)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||+||||++|++++ |+| ++++.||+||+..++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~-~~s-~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQ-YAS-TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEE-EES-SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEee-CCC-CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999887 665 679999999988654
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.97 E-value=3.3e-34 Score=209.22 Aligned_cols=76 Identities=25% Similarity=0.423 Sum_probs=69.5
Q ss_pred CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccChhhh
Q 040642 1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKMPEME 78 (233)
Q Consensus 1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~~~~~ 78 (233)
|||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|++++ |+| +++..||++|.....++
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~s-ps~~~il~r~~G~~lw~ 91 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYT-FST-PKFEPIVTQQEGRNLIQ 91 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEE-EEC-TTTTHHHHSHHHHHHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcce-ecC-CCHHHHHHHhhCCcHHH
Confidence 89999999999999999999999999999999999999999999999999999887 544 67999999997754443
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.97 E-value=1.9e-33 Score=202.65 Aligned_cols=71 Identities=31% Similarity=0.431 Sum_probs=66.6
Q ss_pred CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhcc
Q 040642 1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKK 73 (233)
Q Consensus 1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~ 73 (233)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|++++ |++ ++++.||++|..
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~-f~s-~~~~~~i~~~~G 80 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FAT-RKLQPMITSETG 80 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEE-EEC-GGGGGGTSSHHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEE-ecC-CCHHHHHhhhcc
Confidence 89999999999999999999999999999999999999999999999999999877 554 689999997755
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.97 E-value=6.7e-33 Score=203.59 Aligned_cols=71 Identities=31% Similarity=0.424 Sum_probs=66.0
Q ss_pred CCCcccceeeecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhcc
Q 040642 1 MTRKKVKLAYISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKK 73 (233)
Q Consensus 1 mgR~Ki~i~~I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~ 73 (233)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+|||||||++|++++ |+ +++++.||+++..
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~-f~-s~~~~~vi~~~~G 79 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYT-FA-TRKLQPMITSETG 79 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEE-EE-CGGGGGGTSSHHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeee-ec-CccHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999887 54 4689999997643
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=82.31 E-value=9.1 Score=33.71 Aligned_cols=40 Identities=15% Similarity=0.252 Sum_probs=24.4
Q ss_pred hhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhc
Q 040642 28 LLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFK 72 (233)
Q Consensus 28 L~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~ 72 (233)
+..++..-|---|+..|+ ++ ..-..+|+-..++.+|++..
T Consensus 23 ~vE~~~s~Ck~~d~~~C~---De--DwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 23 LVERQQSACKETGWPFCS---DE--DWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred hhhhhccccCCCCCCCCc---hh--hccCCCCccchHHHHHHHhh
Confidence 344566655555677776 22 22233677777898988775
No 7
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=74.30 E-value=25 Score=26.31 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040642 94 IAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRR 152 (233)
Q Consensus 94 i~Kl~e~l~kl~~~n~e~e~~~lm~~~l~~~~~l~~Ls~~eL~~L~~~Le~~lk~ir~R 152 (233)
+.++.+.|++.+....+..-+.+-..+ .--++++||.++|+++...|-+.+..+..-
T Consensus 24 l~kA~e~l~kE~e~k~eeKkkiLaER~--~pL~id~ls~~~L~e~~keLh~~I~~LEeE 80 (133)
T 1j1d_C 24 LQIAKQELEREAEERRGEKGRALSTRA--QPLELAGLGFAELQDLARQLHARVDKVDEE 80 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT--CCCCCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666555444433333333333 133689999999999998888877766544
No 8
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=64.89 E-value=45 Score=26.23 Aligned_cols=57 Identities=12% Similarity=0.244 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040642 94 IAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRR 152 (233)
Q Consensus 94 i~Kl~e~l~kl~~~n~e~e~~~lm~~~l~~~~~l~~Ls~~eL~~L~~~Le~~lk~ir~R 152 (233)
+.++.+.|++.+....+..-+.+...+ .--+|++||.++|+++...|-+.+..+..-
T Consensus 24 l~kA~e~L~~E~e~k~eEKkkiLaER~--kPLnid~Lse~~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 24 LQIAKQELEREAEERRGEKGRALSTRA--QPLELAGLGFAELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345556665555444333333333333 123688999999999998887776655433
No 9
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=61.46 E-value=12 Score=19.97 Aligned_cols=27 Identities=22% Similarity=0.190 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040642 133 IGLNDLGLQIEHNIREICRRMETLNNI 159 (233)
Q Consensus 133 ~eL~~L~~~Le~~lk~ir~R~~~L~~~ 159 (233)
++|+.|...|+..-+.+++++++|..+
T Consensus 2 dqlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888889999989999998888643
No 10
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=52.57 E-value=3.7 Score=29.54 Aligned_cols=50 Identities=22% Similarity=0.240 Sum_probs=37.9
Q ss_pred ecCCccccccccccccchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhh
Q 040642 11 ISNDSARKATFKKRKKGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLS 69 (233)
Q Consensus 11 I~n~~~R~~TF~KRr~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ 69 (233)
|.++.....||.-.-.-|.++.-+|+.+| ++.|+|.|+.+.. ..|+..|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l----dTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL----DTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE----EEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe----cccchhhh
Confidence 44555667788888899999999999888 9999999985442 23554444
No 11
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.59 E-value=30 Score=17.85 Aligned_cols=19 Identities=32% Similarity=0.394 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040642 89 FLRQRIAKAYEQLKKQRKD 107 (233)
Q Consensus 89 ~l~q~i~Kl~e~l~kl~~~ 107 (233)
-+..+++.+++++.|++++
T Consensus 5 elykeledlqerlrklrkk 23 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3556777788888887765
No 12
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=44.30 E-value=29 Score=20.53 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 040642 130 MNMIGLNDLGLQIEHNIREICRRMETLNNI 159 (233)
Q Consensus 130 Ls~~eL~~L~~~Le~~lk~ir~R~~~L~~~ 159 (233)
+|-+||.+=...++.-+..++++|..|+.+
T Consensus 2 ~tk~~l~qkI~kVdrEI~Kte~kI~~lqkK 31 (42)
T 2l5g_B 2 LSKEELIQNMDRVDREITMVEQQISKLKKK 31 (42)
T ss_dssp CSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777777777654
No 13
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=42.01 E-value=2e+02 Score=26.00 Aligned_cols=29 Identities=21% Similarity=0.236 Sum_probs=17.0
Q ss_pred cCCceeeeeecCCCCCCccCCCCcchhHHhhhhc
Q 040642 39 CGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFK 72 (233)
Q Consensus 39 Cd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~ 72 (233)
.|+..| ..+..-..+|+-..++.+|++-.
T Consensus 32 ~D~pgC-----aDeDwGvkCPSGCrLqglL~kqe 60 (491)
T 1m1j_A 32 KNWPIC-----VDDDWGTKCPSGCRMQGIIDDTD 60 (491)
T ss_dssp TCCCBC-----CTTSTTTEECCSTTHHHHHHHHH
T ss_pred CCCCCC-----ccccccCCCCCccchhhHHHHhh
Confidence 455566 33333334687777888887653
No 14
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=40.17 E-value=89 Score=21.49 Aligned_cols=12 Identities=33% Similarity=0.695 Sum_probs=8.1
Q ss_pred chhHHhhhhccC
Q 040642 63 GVQRVLSRFKKM 74 (233)
Q Consensus 63 ~v~~Vl~ry~~~ 74 (233)
.++..+.+|..+
T Consensus 2 ~~Q~~i~~f~~l 13 (107)
T 1fxk_A 2 NVQHQLAQFQQL 13 (107)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 467777777663
No 15
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=37.66 E-value=25 Score=23.73 Aligned_cols=17 Identities=24% Similarity=0.208 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040642 89 FLRQRIAKAYEQLKKQR 105 (233)
Q Consensus 89 ~l~q~i~Kl~e~l~kl~ 105 (233)
-+.+++..|+.++.-+.
T Consensus 11 ~le~Ri~~LE~klAfqE 27 (78)
T 3efg_A 11 ELEARLVELETRLSFQE 27 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45566776666554444
No 16
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=36.16 E-value=45 Score=26.68 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 040642 88 SFLRQRIAKAYEQLKKQRKDNRE 110 (233)
Q Consensus 88 ~~l~q~i~Kl~e~l~kl~~~n~e 110 (233)
.-|++++..+++++..++.+|.+
T Consensus 118 ~~Lh~~ie~l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 118 EKLHKEIEQKDNEIARLKKENKE 140 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777777777766654
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=35.93 E-value=75 Score=29.20 Aligned_cols=14 Identities=14% Similarity=0.297 Sum_probs=8.0
Q ss_pred CCCCcchhHHhhhh
Q 040642 58 WPSPLGVQRVLSRF 71 (233)
Q Consensus 58 ~ps~~~v~~Vl~ry 71 (233)
+|+-..++.+|++.
T Consensus 45 CPSGCrLQglLdkq 58 (562)
T 3ghg_A 45 CPSGCRMKGLIDEV 58 (562)
T ss_dssp EECHHHHHHHHHHH
T ss_pred CCcccchhhhHHhh
Confidence 34444566666655
No 18
>1ytz_I Troponin I; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.2 PDB: 2w49_2 2w4u_2 1yv0_I 1vdi_A 1vdj_A
Probab=34.25 E-value=1.7e+02 Score=22.95 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040642 94 IAKAYEQLKKQRKDNREKEMERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIREICRR 152 (233)
Q Consensus 94 i~Kl~e~l~kl~~~n~e~e~~~lm~~~l~~~~~l~~Ls~~eL~~L~~~Le~~lk~ir~R 152 (233)
+.++.+.|++.+....+..-+.+...+ . --++++ |.++|+++...|-..+..+..-
T Consensus 22 l~kA~e~L~~E~e~k~eeKkkiLaER~-k-PLnid~-se~~L~e~ckELh~~I~~LEeE 77 (182)
T 1ytz_I 22 LQLAVTEIEKEAAAKEVEKQNYLAEHS-P-PLSLPG-SMQELQELSKKLHAKIDSVDEE 77 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-C-CCCCCC-SHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-C-CCCCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666555444433333443333 1 236888 9999999999998888877654
No 19
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=33.29 E-value=9.9 Score=19.78 Aligned_cols=12 Identities=25% Similarity=0.338 Sum_probs=9.4
Q ss_pred cccccccccccc
Q 040642 15 SARKATFKKRKK 26 (233)
Q Consensus 15 ~~R~~TF~KRr~ 26 (233)
+.|++.|+|||.
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 568888888873
No 20
>2p63_A Cell division control protein 4; ubiquitination, helix bundle, SCF complex, cell cycle; 2.67A {Saccharomyces cerevisiae}
Probab=30.96 E-value=35 Score=21.23 Aligned_cols=29 Identities=31% Similarity=0.589 Sum_probs=23.9
Q ss_pred HHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHH
Q 040642 113 MERVMFQSLTGSNVFLNMNMIGLNDLGLQIEHNIR 147 (233)
Q Consensus 113 ~~~lm~~~l~~~~~l~~Ls~~eL~~L~~~Le~~lk 147 (233)
+++++++. +.+|+-.||.+|.-.|-..||
T Consensus 26 ~knLiF~L------vs~m~RseLSDl~TlikDNLK 54 (56)
T 2p63_A 26 FKNLLFRL------VANMDRSELSDLGTLIKDNLK 54 (56)
T ss_dssp HHHHHHHH------HHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------HHhccHHHHHHHHHHHHhhhc
Confidence 34677777 778999999999999988876
No 21
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=29.47 E-value=1.2e+02 Score=20.22 Aligned_cols=32 Identities=6% Similarity=0.091 Sum_probs=22.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040642 127 FLNMNMIGLNDLGLQIEHNIREICRRMETLNN 158 (233)
Q Consensus 127 l~~Ls~~eL~~L~~~Le~~lk~ir~R~~~L~~ 158 (233)
..++|-+||.++.-.++..+..-..++.+|..
T Consensus 11 y~~ltreELi~l~lk~~~~l~~k~~~v~eLEd 42 (75)
T 3tso_C 11 YRSLTYEEVLQELVKHKELLRRKDTHIRELED 42 (75)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888877777777777777666653
No 22
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=28.68 E-value=34 Score=20.02 Aligned_cols=20 Identities=15% Similarity=0.275 Sum_probs=17.7
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 040642 127 FLNMNMIGLNDLGLQIEHNI 146 (233)
Q Consensus 127 l~~Ls~~eL~~L~~~Le~~l 146 (233)
+.+||+-|+.+|...|++.+
T Consensus 10 i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 10 IEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HTTSCHHHHHHHHHHHHHHT
T ss_pred HHhCcHHHHHHHHHHHHHHH
Confidence 78999999999999988765
No 23
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=27.09 E-value=29 Score=26.86 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=18.9
Q ss_pred hcccCCceeeeeecCCCCCCc-cCCCC
Q 040642 36 KTLCGIDVCAIIFSPYDDQPE-IWPSP 61 (233)
Q Consensus 36 s~LCd~evavIvfsp~gk~~~-~~ps~ 61 (233)
+.-|++.|-+++||+..+.+- +-|.+
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnD 142 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYD 142 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESS
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCC
Confidence 456999999999999877442 23544
No 24
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=25.11 E-value=83 Score=22.45 Aligned_cols=27 Identities=11% Similarity=0.076 Sum_probs=22.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040642 126 VFLNMNMIGLNDLGLQIEHNIREICRR 152 (233)
Q Consensus 126 ~l~~Ls~~eL~~L~~~Le~~lk~ir~R 152 (233)
++++||.++|.++...|-+.+..+.+-
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeE 64 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAE 64 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 388999999999999988888776654
No 25
>2ygg_A Sodium/hydrogen exchanger 1; metal binding protein-transport protein complex; HET: TAM; 2.23A {Homo sapiens}
Probab=23.79 E-value=1.2e+02 Score=20.01 Aligned_cols=28 Identities=7% Similarity=0.210 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040642 129 NMNMIGLNDLGLQIEHNIREICRRMETL 156 (233)
Q Consensus 129 ~Ls~~eL~~L~~~Le~~lk~ir~R~~~L 156 (233)
.|+.+++.++-..|...|-.||+|...-
T Consensus 3 ~ls~~~~e~ir~IL~~NLykiRqr~~SY 30 (70)
T 2ygg_A 3 ALSKDKEEEIRKILRNNLQKTRQRLRSY 30 (70)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3788999999999999999999996654
No 26
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=23.62 E-value=19 Score=26.10 Aligned_cols=16 Identities=25% Similarity=0.380 Sum_probs=12.5
Q ss_pred hhhhcccCCceeeeee
Q 040642 33 SELKTLCGIDVCAIIF 48 (233)
Q Consensus 33 ~ELs~LCd~evavIvf 48 (233)
..+.+|||++|..=.-
T Consensus 30 ~~ftaLCG~~VTp~~~ 45 (116)
T 3rmq_A 30 RPFTALCGETVTPQTE 45 (116)
T ss_dssp CCEECTTSCEECCCGG
T ss_pred CccccccCCeecCCCC
Confidence 5789999999876543
No 27
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=22.42 E-value=2.4e+02 Score=24.90 Aligned_cols=20 Identities=10% Similarity=0.378 Sum_probs=15.5
Q ss_pred CCccCCCCcchhHHhhhhcc
Q 040642 54 QPEIWPSPLGVQRVLSRFKK 73 (233)
Q Consensus 54 ~~~~~ps~~~v~~Vl~ry~~ 73 (233)
+-.++|...++.+.|.+|+.
T Consensus 15 ~G~~CPT~C~i~d~L~k~e~ 34 (409)
T 1m1j_C 15 FGSYCPTTCGIADFFNKYRL 34 (409)
T ss_dssp GCCEEECTTHHHHHHHHHHH
T ss_pred cCCcCCCcccHHHHHHHHHh
Confidence 33456777889999999977
No 28
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=21.63 E-value=24 Score=18.58 Aligned_cols=9 Identities=33% Similarity=0.933 Sum_probs=6.8
Q ss_pred hhhhhcccC
Q 040642 32 VSELKTLCG 40 (233)
Q Consensus 32 a~ELs~LCd 40 (233)
.+|||.||.
T Consensus 14 msDLs~lC~ 22 (26)
T 2k1v_A 14 MTDLSALCX 22 (26)
T ss_dssp HHHHTTTC-
T ss_pred HHHHHHHHh
Confidence 469999995
No 29
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=21.36 E-value=4.3e+02 Score=23.36 Aligned_cols=31 Identities=10% Similarity=0.124 Sum_probs=20.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040642 131 NMIGLNDLGLQIEHNIREICRRMETLNNIAT 161 (233)
Q Consensus 131 s~~eL~~L~~~Le~~lk~ir~R~~~L~~~~~ 161 (233)
++.+|+.+....+.++..+...+.+|...-.
T Consensus 106 ~i~~l~~~~~~~~~~i~~L~~~v~~l~~~~~ 136 (411)
T 3ghg_C 106 SIRYLQEIYNSNNQKIVNLKEKVAQLEAQCQ 136 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456666666667777777777777766544
No 30
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=20.89 E-value=2.1e+02 Score=19.72 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=7.3
Q ss_pred cchhHHhhhhcc
Q 040642 62 LGVQRVLSRFKK 73 (233)
Q Consensus 62 ~~v~~Vl~ry~~ 73 (233)
+.++..+.+|..
T Consensus 6 ~e~Q~~i~~~~~ 17 (117)
T 2zqm_A 6 PQVQAMLGQLES 17 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 346666776655
No 31
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=20.56 E-value=3.7e+02 Score=24.71 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=12.9
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 040642 129 NMNMIGLNDLGLQIEHNI 146 (233)
Q Consensus 129 ~Ls~~eL~~L~~~Le~~l 146 (233)
.+++++...+.++|++..
T Consensus 172 ~vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 172 EVDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred ecchHHHHHHHHHHHHHh
Confidence 677777777777777654
No 32
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=20.30 E-value=1.4e+02 Score=17.48 Aligned_cols=30 Identities=23% Similarity=0.285 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 040642 132 MIGLNDLGLQIEHNIREICRRMETLNNIAT 161 (233)
Q Consensus 132 ~~eL~~L~~~Le~~lk~ir~R~~~L~~~~~ 161 (233)
+.||..-...|+....++..|+..|+....
T Consensus 5 l~eLE~r~k~le~~naeLEervstLq~EN~ 34 (42)
T 2oqq_A 5 LSELENRVKDLENKNSELEERLSTLQNENQ 34 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346666667777777777777777765443
No 33
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=20.23 E-value=2.3e+02 Score=28.75 Aligned_cols=43 Identities=19% Similarity=0.341 Sum_probs=29.6
Q ss_pred cchhhhhhhhhcccCCceeeeeecCCCCCCccCCCCcchhHHhhhhccC
Q 040642 26 KGLLKKVSELKTLCGIDVCAIIFSPYDDQPEIWPSPLGVQRVLSRFKKM 74 (233)
Q Consensus 26 ~GL~KKa~ELs~LCd~evavIvfsp~gk~~~~~ps~~~v~~Vl~ry~~~ 74 (233)
.+|+|+- .|.+-.++ ..+++|++.|+.|.+ .+++.||+.|..+
T Consensus 958 ~~L~k~t-~L~~s~~~-~Nm~~~d~~g~i~k~----~~l~eiL~~f~~~ 1000 (1177)
T 4gfh_A 958 IGFYERF-KLISPISL-MNMVAFDPHGKIKKY----NSVNEILSEFYYV 1000 (1177)
T ss_dssp HCHHHHT-TCEEEECC-SCCEEECTTSCEEEC----SSHHHHHHHHHHH
T ss_pred HhHHHhc-cCcceecc-eEEEEEcCCCCccCc----CCHHHHHHHHHHH
Confidence 4566554 45554443 268899999988774 3589999999664
Done!