BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040643
(968 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 93 GRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGN--VAVQCVNQIHGLIISHGFGGSPLI 150
R +F QMI D V+PNEATF R + + +A V Q+ FG P +
Sbjct: 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQM------KAFGIQPRL 140
Query: 151 SN--PLIDLYAKNGFIDSAKKV 170
+ P + + + G D A +V
Sbjct: 141 RSYGPALFGFCRKGDADKAYEV 162
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 34.3 bits (77), Expect = 0.33, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 11/87 (12%)
Query: 226 KIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQ----------IFSKM 275
K+E FE F+G + ++ + CN YS+ GN A Q +SK
Sbjct: 24 KVENFEAAVHFYGKAIELNPANAVYFCNRAAA-YSKLGNYAGAVQDCERAICIDPAYSKA 82
Query: 276 QQRDGVTYNSLISGLAQCGYSDKALEL 302
R G+ +SL + Y KALEL
Sbjct: 83 YGRMGLALSSLNKHVEAVAYYKKALEL 109
>pdb|4FSX|A Chain A, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
pdb|4FSX|B Chain B, Crystal Structure Of Se-Substituted Zea Mays Zmet2 In
Complex With Sah
Length = 784
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 ELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGV 281
E FE +Q H +W F +E V N+LV++ S G+ ++F ++ D V
Sbjct: 81 EFFEGTDQCHYFTCRWFFRAEDTVINSLVSI-SVDGHKHDPRRVFLSEEKNDNV 133
>pdb|4FT2|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT2|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-15)k9me2 Peptide And Sah
pdb|4FT4|B Chain B, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
pdb|4FT4|A Chain A, Crystal Structure Of Zea Mays Zmet2 In Complex
H3(1-32)k9me2 Peptide And Sah
Length = 784
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 228 ELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGV 281
E FE +Q H +W F +E V N+LV++ S G+ ++F ++ D V
Sbjct: 81 EFFEGTDQCHYFTCRWFFRAEDTVINSLVSI-SVDGHKHDPRRVFLSEEKNDNV 133
>pdb|3RM3|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257
pdb|3RLI|A Chain A, Crystal Structure Of Monoacylglycerol Lipase From Bacillus
Sp. H257 In Complex With Pmsf
Length = 270
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 124 SGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGF 163
SG N G+++ HGF G+P PL + YAK G+
Sbjct: 29 SGAEPFYAENGPVGVLLVHGFTGTPHSMRPLAEAYAKAGY 68
>pdb|2IIU|A Chain A, Crystal Structure Of A Putative Phou-Like Phosphate
Regulatory Protein (Np_719307.1) From Shewanella
Oneidensis Mr-1 At 2.28 A Resolution.
pdb|2IIU|B Chain B, Crystal Structure Of A Putative Phou-Like Phosphate
Regulatory Protein (Np_719307.1) From Shewanella
Oneidensis Mr-1 At 2.28 A Resolution.
pdb|2IIU|C Chain C, Crystal Structure Of A Putative Phou-Like Phosphate
Regulatory Protein (Np_719307.1) From Shewanella
Oneidensis Mr-1 At 2.28 A Resolution.
pdb|2OLT|A Chain A, Crystal Structure Of A Phou-Like Protein (So_3770) From
Shewanella Oneidensis Mr-1 At 2.00 A Resolution
pdb|2OLT|B Chain B, Crystal Structure Of A Phou-Like Protein (So_3770) From
Shewanella Oneidensis Mr-1 At 2.00 A Resolution
pdb|2OLT|C Chain C, Crystal Structure Of A Phou-Like Protein (So_3770) From
Shewanella Oneidensis Mr-1 At 2.00 A Resolution
Length = 227
Score = 30.8 bits (68), Expect = 3.9, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 9/61 (14%)
Query: 88 AKKLSGRVLGLFLQMIDDDVIPN--EATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFG 145
AK +SGRV+G L +IP + F+ L+ CI + +A Q +N++ L + GF
Sbjct: 100 AKDISGRVIGRQL------LIPQALQVPFIAYLQRCIDAVGLAQQVINELDDL-LEAGFR 152
Query: 146 G 146
G
Sbjct: 153 G 153
>pdb|2WKE|A Chain A, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|B Chain B, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|C Chain C, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2WKE|D Chain D, Crystal Structure Of The Actinomadura R39 Dd-Peptidase
Inhibited By 6-Beta-Iodopenicillanate.
pdb|2XDM|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XDM|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39 Dd
Peptidase And A Peptidoglycan Mimetic Boronate Inhibitor
pdb|2XK1|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2XK1|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd- Peptidase And A Boronate Inhibitor
pdb|2Y4A|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y4A|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y55|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|2Y59|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVT|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|A Chain A, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|B Chain B, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|C Chain C, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
pdb|3ZVW|D Chain D, Unexpected Tricovalent Binding Mode Of Boronic Acids
Within The Active Site Of A Penicillin Binding Protein
Length = 466
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM 759
VGV A S +G+ GL + G + + VVDLLG+AG A+ ++ +
Sbjct: 324 LVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTAD---TVVDLLGQAGSAPWAQTWSASL 380
Query: 760 PI--EPDAMVWRTLLSACR 776
P+ E D V TL + R
Sbjct: 381 PVAGESDPFVGGTLANRMR 399
>pdb|4GXX|A Chain A, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
pdb|4GXX|C Chain C, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
pdb|4GXX|E Chain E, Crystal Structure Of The "avianized" 1918 Influenza Virus
Hemagglutinin
Length = 331
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 679 LEAINLFEKMK---KHDVMPNHVTFVGVLSACSHVG 711
L +++ FEK + K PNH T GV +ACS+ G
Sbjct: 109 LSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAG 144
>pdb|2WRG|H Chain H, Structure Of H1 1918 Hemagglutinin With Human Receptor
pdb|2WRG|J Chain J, Structure Of H1 1918 Hemagglutinin With Human Receptor
pdb|2WRG|L Chain L, Structure Of H1 1918 Hemagglutinin With Human Receptor
Length = 326
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 679 LEAINLFEKMK---KHDVMPNHVTFVGVLSACSHVG 711
L +++ FEK + K PNH T GV +ACS+ G
Sbjct: 105 LSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAG 140
>pdb|1RD8|A Chain A, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
pdb|1RD8|C Chain C, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
pdb|1RD8|E Chain E, Crystal Sructure Of The 1918 Human H1 Hemagglutinin
Precursor (Ha0)
Length = 335
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 679 LEAINLFEKMK---KHDVMPNHVTFVGVLSACSHVG 711
L +++ FEK + K PNH T GV +ACS+ G
Sbjct: 113 LSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAG 148
>pdb|3GBN|A Chain A, Crystal Structure Of Fab Cr6261 In Complex With The 1918
H1n1 Influenza Virus Hemagglutinin
pdb|3LZF|A Chain A, Crystal Structure Of Fab 2d1 In Complex With The 1918
Influenza Virus Hemagglutinin
pdb|3R2X|A Chain A, Crystal Structure Of The De Novo Designed Binding Protein
Hb36.3 In Complex The The 1918 Influenza Virus
Hemagglutinin
pdb|4EEF|A Chain A, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|C Chain C, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4EEF|E Chain E, Crystal Structure Of The Designed Inhibitor Protein
F-Hb80.4 In Complex With The 1918 Influenza Virus
Hemagglutinin.
pdb|4GXU|A Chain A, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|C Chain C, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|E Chain E, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|G Chain G, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|I Chain I, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
pdb|4GXU|K Chain K, Crystal Structure Of Antibody 1f1 Bound To The 1918
Influenza Hemagglutinin
Length = 331
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 679 LEAINLFEKMK---KHDVMPNHVTFVGVLSACSHVG 711
L +++ FEK + K PNH T GV +ACS+ G
Sbjct: 109 LSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAG 144
>pdb|1RUZ|H Chain H, 1918 H1 Hemagglutinin
pdb|1RUZ|J Chain J, 1918 H1 Hemagglutinin
pdb|1RUZ|L Chain L, 1918 H1 Hemagglutinin
Length = 328
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 679 LEAINLFEKMK---KHDVMPNHVTFVGVLSACSHVG 711
L +++ FEK + K PNH T GV +ACS+ G
Sbjct: 109 LSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAG 144
>pdb|1Y56|A Chain A, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 493
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 592 VQANLYTFGSVVSAAANLANIKQGKQVHAMIIKT-GYDSET 631
++ +Y GS VS + AN +GK V A I+K GYD++
Sbjct: 342 IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKEFGYDAQP 382
>pdb|1W79|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W79|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|A Chain A, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|B Chain B, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|C Chain C, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Q|D Chain D, Crystal Structure Of The
Dd-Transpeptidase-Carboxypeptidase From Actinomadura R39
pdb|1W8Y|A Chain A, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|B Chain B, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|C Chain C, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|1W8Y|D Chain D, Crystal Structure Of The Nitrocefin Acyl-Dd-Peptidase From
Actinomadura R39.
pdb|2VGJ|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGJ|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|A Chain A, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|B Chain B, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|C Chain C, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2VGK|D Chain D, Crystal Structure Of Actinomadura R39 Dd-Peptidase
Complexed With A Peptidoglycan-Mimetic Cephalosporin
pdb|2XLN|A Chain A, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|B Chain B, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|C Chain C, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
pdb|2XLN|D Chain D, Crystal Structure Of A Complex Between Actinomadura R39
Dd-Peptidase And A Boronate Inhibitor
Length = 489
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 5/79 (6%)
Query: 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM 759
VGV A S +G+ GL + G + + VVDLLG+AG A+ ++ +
Sbjct: 324 LVGVEEALSGLGVDTAGLVLNDGSGLSRGNLVTAD---TVVDLLGQAGSAPWAQTWSASL 380
Query: 760 PI--EPDAMVWRTLLSACR 776
P+ E D V TL + R
Sbjct: 381 PVAGESDPFVGGTLANRMR 399
>pdb|3MKQ|B Chain B, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|D Chain D, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|F Chain F, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 177
Score = 29.6 bits (65), Expect = 8.2, Method: Composition-based stats.
Identities = 26/113 (23%), Positives = 46/113 (40%), Gaps = 10/113 (8%)
Query: 560 DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQ-V 618
D+I+W LI G A ++ + LY V+ + + NI Q ++
Sbjct: 33 DSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDF 92
Query: 619 HAMIIKTGYDSETEASNSLIT---------LYAKCGSIDDAKREFLEMPEKNE 662
+M++ T Y++ T+ +S+ AK + A FLE E +E
Sbjct: 93 GSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFLEQAEVDE 145
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,930,968
Number of Sequences: 62578
Number of extensions: 1142243
Number of successful extensions: 2660
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2653
Number of HSP's gapped (non-prelim): 19
length of query: 968
length of database: 14,973,337
effective HSP length: 108
effective length of query: 860
effective length of database: 8,214,913
effective search space: 7064825180
effective search space used: 7064825180
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)