Query 040643
Match_columns 968
No_of_seqs 937 out of 5620
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 10:24:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-165 2E-169 1506.8 89.8 810 73-966 48-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-135 4E-140 1217.7 67.2 613 277-968 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 3.2E-94 6.9E-99 882.9 71.6 649 1-735 77-728 (857)
4 PLN03081 pentatricopeptide (PP 100.0 3E-69 6.6E-74 646.2 53.6 476 175-732 83-562 (697)
5 PLN03218 maturation of RBCL 1; 100.0 4.9E-68 1.1E-72 635.1 51.8 528 145-766 367-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 1.2E-66 2.6E-71 623.2 49.1 528 41-698 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 5.9E-39 1.3E-43 404.2 78.6 799 8-825 54-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.1E-38 1.1E-42 395.7 78.7 803 9-829 21-867 (899)
9 PF14432 DYW_deaminase: DYW fa 100.0 4.4E-42 9.5E-47 300.5 8.2 106 835-958 2-116 (116)
10 PRK11447 cellulose synthase su 99.9 8.6E-22 1.9E-26 248.2 64.0 451 331-831 251-744 (1157)
11 PRK11447 cellulose synthase su 99.9 9.6E-22 2.1E-26 247.8 55.4 601 186-828 35-700 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 4.2E-20 9.2E-25 221.5 58.7 650 59-824 58-736 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.4E-19 3.1E-24 217.1 58.7 334 474-826 356-704 (987)
14 KOG4626 O-linked N-acetylgluco 99.8 2.2E-18 4.7E-23 181.9 32.2 382 381-818 116-509 (966)
15 KOG4626 O-linked N-acetylgluco 99.8 2.9E-16 6.3E-21 166.1 33.2 356 460-827 116-485 (966)
16 PRK11788 tetratricopeptide rep 99.8 3.2E-17 6.9E-22 184.5 26.0 244 463-715 110-365 (389)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.6E-15 3.5E-20 179.8 39.8 248 574-827 307-570 (615)
18 PRK11788 tetratricopeptide rep 99.8 7.2E-17 1.6E-21 181.6 25.8 292 539-836 44-355 (389)
19 KOG2002 TPR-containing nuclear 99.8 7.4E-14 1.6E-18 156.5 46.5 548 164-758 146-741 (1018)
20 KOG4318 Bicoid mRNA stability 99.7 1.9E-14 4.2E-19 158.8 38.6 697 96-828 10-808 (1088)
21 PRK10049 pgaA outer membrane p 99.7 3.7E-15 8E-20 179.8 36.4 182 642-827 248-455 (765)
22 KOG2002 TPR-containing nuclear 99.7 1.1E-12 2.3E-17 147.3 49.9 554 195-808 146-759 (1018)
23 TIGR00990 3a0801s09 mitochondr 99.7 6.6E-14 1.4E-18 166.1 39.8 269 543-827 307-596 (615)
24 PRK15174 Vi polysaccharide exp 99.7 2E-14 4.4E-19 169.6 34.7 328 463-799 45-386 (656)
25 KOG4422 Uncharacterized conser 99.7 4.8E-14 1E-18 143.4 29.2 341 180-541 117-479 (625)
26 KOG4318 Bicoid mRNA stability 99.7 8.2E-13 1.8E-17 146.2 40.1 711 2-774 17-823 (1088)
27 PRK15174 Vi polysaccharide exp 99.7 4.4E-14 9.5E-19 166.8 31.9 324 495-828 42-381 (656)
28 PRK14574 hmsH outer membrane p 99.6 1.7E-12 3.7E-17 153.3 41.8 407 355-828 73-513 (822)
29 PRK10049 pgaA outer membrane p 99.6 1.1E-12 2.3E-17 158.5 39.1 398 222-726 23-456 (765)
30 KOG4422 Uncharacterized conser 99.6 3.9E-12 8.4E-17 129.7 35.7 332 77-427 117-479 (625)
31 PRK14574 hmsH outer membrane p 99.5 7E-11 1.5E-15 139.8 41.9 425 260-726 45-513 (822)
32 KOG0495 HAT repeat protein [RN 99.5 1.2E-07 2.6E-12 102.6 54.5 369 461-842 517-892 (913)
33 KOG2076 RNA polymerase III tra 99.4 1.1E-09 2.3E-14 123.0 38.7 148 258-409 149-308 (895)
34 KOG0495 HAT repeat protein [RN 99.4 1.2E-08 2.7E-13 110.0 43.5 460 257-807 414-893 (913)
35 KOG2003 TPR repeat-containing 99.4 2.6E-10 5.5E-15 117.1 29.0 477 286-815 207-710 (840)
36 PF13429 TPR_15: Tetratricopep 99.4 5.5E-13 1.2E-17 141.9 9.9 250 571-825 18-274 (280)
37 KOG0985 Vesicle coat protein c 99.4 1.6E-06 3.4E-11 98.2 55.9 737 53-839 368-1260(1666)
38 KOG2076 RNA polymerase III tra 99.3 8.1E-10 1.8E-14 123.9 29.4 356 467-839 146-523 (895)
39 KOG0547 Translocase of outer m 99.3 3.4E-09 7.3E-14 110.7 30.1 209 610-824 340-562 (606)
40 KOG2003 TPR repeat-containing 99.3 1.7E-09 3.7E-14 111.2 27.4 273 468-747 427-708 (840)
41 KOG1126 DNA-binding cell divis 99.3 2.1E-10 4.5E-15 124.8 21.4 221 599-827 356-585 (638)
42 KOG1126 DNA-binding cell divis 99.3 2.2E-10 4.7E-15 124.7 21.4 273 545-827 334-619 (638)
43 PRK10747 putative protoheme IX 99.3 4.9E-10 1.1E-14 124.8 24.9 120 473-593 97-219 (398)
44 KOG0985 Vesicle coat protein c 99.3 4.4E-06 9.5E-11 94.8 52.1 737 17-811 475-1325(1666)
45 TIGR00540 hemY_coli hemY prote 99.3 9.2E-10 2E-14 123.4 24.3 291 471-793 95-398 (409)
46 KOG1915 Cell cycle control pro 99.2 1E-07 2.3E-12 99.3 35.4 481 292-826 85-623 (677)
47 KOG1155 Anaphase-promoting com 99.2 3.6E-09 7.9E-14 109.9 24.8 242 573-823 274-531 (559)
48 KOG1173 Anaphase-promoting com 99.2 2.9E-08 6.3E-13 106.1 31.9 248 570-824 253-514 (611)
49 PF13041 PPR_2: PPR repeat fam 99.2 3.4E-11 7.3E-16 89.3 6.9 50 660-709 1-50 (50)
50 TIGR02521 type_IV_pilW type IV 99.2 8.6E-10 1.9E-14 114.1 20.0 196 630-827 30-231 (234)
51 TIGR00540 hemY_coli hemY prote 99.2 1.2E-08 2.6E-13 114.4 29.5 275 542-825 96-396 (409)
52 PF13429 TPR_15: Tetratricopep 99.2 8.8E-11 1.9E-15 124.9 11.4 252 535-794 13-277 (280)
53 KOG1155 Anaphase-promoting com 99.2 1E-07 2.3E-12 99.3 32.5 116 608-725 376-494 (559)
54 KOG3616 Selective LIM binding 99.2 7.6E-07 1.6E-11 97.2 40.2 525 161-822 457-1018(1636)
55 PRK10747 putative protoheme IX 99.2 2.5E-08 5.5E-13 111.2 30.1 270 543-824 97-386 (398)
56 KOG2047 mRNA splicing factor [ 99.2 8.9E-06 1.9E-10 88.5 46.9 537 164-783 91-712 (835)
57 PF13041 PPR_2: PPR repeat fam 99.1 1.1E-10 2.3E-15 86.7 5.9 50 177-226 1-50 (50)
58 KOG1915 Cell cycle control pro 99.1 2.4E-06 5.3E-11 89.3 39.2 414 161-658 86-534 (677)
59 KOG3616 Selective LIM binding 99.1 1.3E-06 2.9E-11 95.3 38.5 481 59-666 545-1032(1636)
60 PRK12370 invasion protein regu 99.1 1.8E-08 3.9E-13 117.4 23.7 241 577-827 277-534 (553)
61 COG2956 Predicted N-acetylgluc 99.1 1.3E-07 2.9E-12 94.1 25.8 311 471-850 46-369 (389)
62 KOG1174 Anaphase-promoting com 99.0 1.6E-06 3.5E-11 89.1 33.6 399 397-802 59-508 (564)
63 KOG1840 Kinesin light chain [C 99.0 3.7E-08 8.1E-13 109.0 21.8 229 597-825 200-476 (508)
64 KOG4162 Predicted calmodulin-b 99.0 2.2E-05 4.9E-10 87.6 41.9 421 345-826 318-781 (799)
65 COG3071 HemY Uncharacterized e 99.0 5.5E-07 1.2E-11 92.9 26.4 277 473-758 97-386 (400)
66 KOG1173 Anaphase-promoting com 98.9 8.3E-07 1.8E-11 95.2 28.6 218 529-776 311-533 (611)
67 PRK11189 lipoprotein NlpI; Pro 98.9 5.9E-08 1.3E-12 103.4 20.5 208 611-827 41-264 (296)
68 PRK12370 invasion protein regu 98.9 7.7E-08 1.7E-12 112.2 21.9 209 610-826 275-500 (553)
69 KOG3785 Uncharacterized conser 98.9 7.6E-06 1.6E-10 82.5 30.8 310 445-796 167-492 (557)
70 KOG2047 mRNA splicing factor [ 98.9 0.00031 6.7E-09 76.9 47.8 547 148-748 102-709 (835)
71 TIGR02521 type_IV_pilW type IV 98.8 3.4E-07 7.4E-12 94.5 21.6 195 562-795 32-233 (234)
72 KOG0547 Translocase of outer m 98.8 1.2E-06 2.6E-11 92.2 24.8 342 464-822 119-526 (606)
73 COG3071 HemY Uncharacterized e 98.8 2.1E-06 4.5E-11 88.7 26.0 204 459-695 186-394 (400)
74 COG3063 PilF Tfp pilus assembl 98.8 2.8E-07 6.1E-12 87.9 17.4 162 664-830 37-204 (250)
75 KOG2376 Signal recognition par 98.8 3.9E-05 8.4E-10 83.2 35.3 379 292-720 91-514 (652)
76 COG2956 Predicted N-acetylgluc 98.8 2E-06 4.4E-11 86.0 23.9 249 573-826 47-310 (389)
77 KOG2376 Signal recognition par 98.8 4E-05 8.7E-10 83.1 34.5 182 632-821 310-513 (652)
78 KOG1129 TPR repeat-containing 98.8 2.6E-07 5.6E-12 91.9 16.7 154 672-829 300-459 (478)
79 KOG3617 WD40 and TPR repeat-co 98.8 5E-05 1.1E-09 84.7 35.7 433 54-579 737-1189(1416)
80 KOG1127 TPR repeat-containing 98.7 0.00035 7.5E-09 80.3 41.2 175 132-307 475-657 (1238)
81 KOG3785 Uncharacterized conser 98.7 8.9E-06 1.9E-10 82.0 25.7 23 464-486 289-311 (557)
82 KOG1840 Kinesin light chain [C 98.7 8.9E-07 1.9E-11 98.2 20.6 161 633-793 285-478 (508)
83 KOG4162 Predicted calmodulin-b 98.7 8.9E-05 1.9E-09 83.0 35.2 498 191-799 239-788 (799)
84 PRK11189 lipoprotein NlpI; Pro 98.7 2.3E-06 4.9E-11 91.3 22.8 201 601-809 69-281 (296)
85 KOG1156 N-terminal acetyltrans 98.6 0.00034 7.4E-09 76.9 34.1 157 328-499 20-183 (700)
86 COG3063 PilF Tfp pilus assembl 98.5 1.3E-05 2.7E-10 76.9 19.9 193 605-801 44-243 (250)
87 KOG1129 TPR repeat-containing 98.5 3.5E-06 7.7E-11 84.0 16.4 226 533-764 226-461 (478)
88 KOG1127 TPR repeat-containing 98.5 0.00025 5.4E-09 81.4 32.3 564 233-821 475-1097(1238)
89 KOG1156 N-terminal acetyltrans 98.5 0.00078 1.7E-08 74.3 33.6 234 227-506 20-263 (700)
90 KOG3617 WD40 and TPR repeat-co 98.5 0.0018 4E-08 72.8 36.4 300 147-482 725-1057(1416)
91 PRK15359 type III secretion sy 98.4 2.4E-06 5.2E-11 79.9 11.5 122 683-811 14-138 (144)
92 TIGR03302 OM_YfiO outer membra 98.4 1.4E-05 3.1E-10 82.5 18.4 179 631-828 33-232 (235)
93 PF12854 PPR_1: PPR repeat 98.4 2.8E-07 6.1E-12 61.2 3.6 33 244-276 2-34 (34)
94 PF04733 Coatomer_E: Coatomer 98.4 7.3E-06 1.6E-10 86.0 14.9 246 540-827 11-264 (290)
95 KOG1174 Anaphase-promoting com 98.4 0.00036 7.8E-09 72.4 26.3 287 574-873 209-519 (564)
96 PF04733 Coatomer_E: Coatomer 98.4 2E-05 4.4E-10 82.7 18.2 212 536-759 41-262 (290)
97 PF12569 NARP1: NMDA receptor- 98.3 0.00015 3.3E-09 81.9 25.8 281 538-825 12-331 (517)
98 cd05804 StaR_like StaR_like; a 98.3 0.00014 3E-09 80.7 25.3 288 534-826 10-334 (355)
99 KOG1914 mRNA cleavage and poly 98.3 0.0062 1.3E-07 65.9 34.5 176 577-753 347-530 (656)
100 PF12854 PPR_1: PPR repeat 98.3 1.1E-06 2.3E-11 58.4 3.8 32 692-723 2-33 (34)
101 cd05804 StaR_like StaR_like; a 98.3 0.00057 1.2E-08 75.7 28.2 265 561-828 6-293 (355)
102 KOG0624 dsRNA-activated protei 98.3 0.00035 7.6E-09 70.7 23.0 207 466-698 44-257 (504)
103 PLN02789 farnesyltranstransfer 98.2 0.00011 2.5E-09 78.1 20.7 168 640-812 80-268 (320)
104 KOG1125 TPR repeat-containing 98.2 5.3E-05 1.1E-09 82.2 17.1 190 530-723 319-524 (579)
105 PRK15179 Vi polysaccharide bio 98.2 0.0001 2.2E-09 86.5 21.1 124 696-822 85-211 (694)
106 KOG1125 TPR repeat-containing 98.2 2.6E-05 5.7E-10 84.5 14.4 209 609-821 298-520 (579)
107 PF12569 NARP1: NMDA receptor- 98.2 0.0003 6.4E-09 79.5 23.4 283 438-725 13-333 (517)
108 PRK10370 formate-dependent nit 98.2 8.3E-05 1.8E-09 73.7 16.8 116 710-828 52-173 (198)
109 KOG1128 Uncharacterized conser 98.2 3.3E-05 7.2E-10 85.8 15.1 230 525-804 393-626 (777)
110 PRK04841 transcriptional regul 98.2 0.024 5.3E-07 71.5 42.9 325 470-797 384-763 (903)
111 KOG0548 Molecular co-chaperone 98.1 0.0011 2.5E-08 71.6 24.9 212 601-827 229-454 (539)
112 KOG0548 Molecular co-chaperone 98.1 0.0018 3.8E-08 70.2 25.4 173 637-821 304-482 (539)
113 TIGR00756 PPR pentatricopeptid 98.1 5.1E-06 1.1E-10 56.2 4.3 35 663-697 1-35 (35)
114 KOG1070 rRNA processing protei 98.1 0.00016 3.4E-09 85.8 18.9 216 628-871 1455-1683(1710)
115 PRK10370 formate-dependent nit 98.1 0.00012 2.7E-09 72.4 15.9 154 639-805 24-184 (198)
116 PRK04841 transcriptional regul 98.1 0.0011 2.3E-08 83.8 28.4 355 467-827 348-759 (903)
117 TIGR03302 OM_YfiO outer membra 98.1 0.00013 2.9E-09 75.3 16.6 180 596-796 33-234 (235)
118 TIGR00756 PPR pentatricopeptid 98.0 7.8E-06 1.7E-10 55.2 4.1 35 562-596 1-35 (35)
119 PRK15359 type III secretion sy 98.0 3.9E-05 8.5E-10 71.7 9.9 97 729-827 22-120 (144)
120 PRK15363 pathogenicity island 98.0 9.1E-05 2E-09 68.0 11.3 117 733-872 35-153 (157)
121 COG4783 Putative Zn-dependent 97.9 0.00052 1.1E-08 73.5 17.6 110 709-821 318-430 (484)
122 PRK15179 Vi polysaccharide bio 97.9 0.0005 1.1E-08 80.8 19.3 136 661-801 85-224 (694)
123 KOG1128 Uncharacterized conser 97.9 0.00038 8.3E-09 77.7 16.9 195 626-827 393-615 (777)
124 KOG1070 rRNA processing protei 97.9 0.0011 2.5E-08 78.9 21.3 226 561-793 1458-1699(1710)
125 PRK14720 transcript cleavage f 97.9 0.00081 1.8E-08 79.7 20.5 148 664-832 118-288 (906)
126 KOG2053 Mitochondrial inherita 97.9 0.097 2.1E-06 60.6 38.6 166 600-771 440-619 (932)
127 KOG0624 dsRNA-activated protei 97.9 0.003 6.5E-08 64.2 21.1 249 636-929 43-315 (504)
128 COG5010 TadD Flp pilus assembl 97.9 0.0007 1.5E-08 66.8 16.3 134 693-828 62-197 (257)
129 KOG4340 Uncharacterized conser 97.9 0.0065 1.4E-07 60.6 22.7 189 318-527 13-210 (459)
130 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00033 7.2E-09 76.0 15.3 121 700-825 172-294 (395)
131 PF13812 PPR_3: Pentatricopept 97.8 2.7E-05 5.8E-10 52.1 4.3 33 663-695 2-34 (34)
132 PLN02789 farnesyltranstransfer 97.8 0.0011 2.3E-08 70.8 18.4 169 639-812 45-230 (320)
133 COG5010 TadD Flp pilus assembl 97.8 0.00078 1.7E-08 66.5 15.6 179 630-815 66-251 (257)
134 COG4783 Putative Zn-dependent 97.8 0.0027 5.8E-08 68.2 20.4 144 664-829 308-455 (484)
135 TIGR02552 LcrH_SycD type III s 97.8 0.00013 2.9E-09 67.8 9.5 95 733-827 17-113 (135)
136 PF13812 PPR_3: Pentatricopept 97.8 4.2E-05 9E-10 51.2 4.3 34 179-212 1-34 (34)
137 KOG2053 Mitochondrial inherita 97.7 0.17 3.7E-06 58.7 38.4 90 533-623 439-534 (932)
138 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00052 1.1E-08 74.6 13.5 126 634-764 172-299 (395)
139 PF01535 PPR: PPR repeat; Int 97.6 6.1E-05 1.3E-09 49.1 3.4 31 663-693 1-31 (31)
140 KOG1914 mRNA cleavage and poly 97.6 0.14 3E-06 56.0 29.6 128 561-690 366-500 (656)
141 TIGR02552 LcrH_SycD type III s 97.6 0.00092 2E-08 62.0 12.3 114 684-802 5-122 (135)
142 PF01535 PPR: PPR repeat; Int 97.6 9.7E-05 2.1E-09 48.1 3.6 31 180-210 1-31 (31)
143 PLN03088 SGT1, suppressor of 97.5 0.00081 1.8E-08 73.5 12.2 84 742-825 11-96 (356)
144 PRK10153 DNA-binding transcrip 97.4 0.0043 9.4E-08 70.8 16.2 135 658-823 333-477 (517)
145 PF12895 Apc3: Anaphase-promot 97.3 0.00017 3.8E-09 60.3 3.4 76 747-823 3-82 (84)
146 PF09976 TPR_21: Tetratricopep 97.3 0.0033 7.2E-08 59.0 12.3 49 774-823 94-142 (145)
147 PF13431 TPR_17: Tetratricopep 97.3 0.00011 2.4E-09 48.6 1.6 32 788-819 2-33 (34)
148 COG3898 Uncharacterized membra 97.3 0.13 2.7E-06 53.9 23.8 246 574-837 133-399 (531)
149 cd00189 TPR Tetratricopeptide 97.3 0.0016 3.4E-08 55.5 9.3 91 736-826 3-95 (100)
150 PF09976 TPR_21: Tetratricopep 97.3 0.0034 7.3E-08 59.0 11.9 112 644-758 24-143 (145)
151 PRK02603 photosystem I assembl 97.2 0.004 8.8E-08 60.4 12.4 131 661-815 34-167 (172)
152 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0025 5.4E-08 57.4 10.3 34 767-800 78-111 (119)
153 KOG4340 Uncharacterized conser 97.2 0.0068 1.5E-07 60.5 13.4 195 635-835 14-214 (459)
154 KOG0553 TPR repeat-containing 97.2 0.0033 7.2E-08 63.4 11.3 100 670-806 89-190 (304)
155 KOG3060 Uncharacterized conser 97.2 0.031 6.8E-07 55.0 17.3 157 641-802 62-228 (289)
156 PF04840 Vps16_C: Vps16, C-ter 97.2 0.44 9.6E-06 50.8 30.2 105 637-758 183-287 (319)
157 TIGR02795 tol_pal_ybgF tol-pal 97.2 0.0028 6E-08 57.1 10.1 94 735-828 4-105 (119)
158 KOG3081 Vesicle coat complex C 97.2 0.06 1.3E-06 53.5 19.0 114 638-758 115-232 (299)
159 KOG3060 Uncharacterized conser 97.1 0.012 2.7E-07 57.7 13.9 171 644-819 25-208 (289)
160 PLN03088 SGT1, suppressor of 97.1 0.0038 8.2E-08 68.3 11.8 105 670-811 10-116 (356)
161 PF13414 TPR_11: TPR repeat; P 97.1 0.0011 2.3E-08 53.0 5.4 61 764-824 2-63 (69)
162 CHL00033 ycf3 photosystem I as 97.1 0.014 3.1E-07 56.3 14.2 110 662-799 35-154 (168)
163 COG4235 Cytochrome c biogenesi 97.0 0.0031 6.8E-08 64.0 9.4 108 730-837 152-265 (287)
164 PRK14720 transcript cleavage f 97.0 0.056 1.2E-06 64.6 21.1 148 496-673 117-268 (906)
165 KOG0553 TPR repeat-containing 97.0 0.0041 8.9E-08 62.8 10.0 93 639-736 89-185 (304)
166 COG3898 Uncharacterized membra 97.0 0.16 3.4E-06 53.2 20.9 250 563-821 84-351 (531)
167 KOG0550 Molecular chaperone (D 97.0 0.0083 1.8E-07 62.9 11.8 88 740-827 256-350 (486)
168 PF13432 TPR_16: Tetratricopep 97.0 0.0015 3.3E-08 51.4 5.3 56 772-827 4-59 (65)
169 KOG1538 Uncharacterized conser 97.0 0.12 2.5E-06 57.4 20.7 97 636-764 708-805 (1081)
170 COG4700 Uncharacterized protei 96.9 0.0093 2E-07 55.4 10.7 105 722-826 78-187 (251)
171 PF13432 TPR_16: Tetratricopep 96.9 0.0023 4.9E-08 50.4 6.0 61 739-799 3-65 (65)
172 CHL00033 ycf3 photosystem I as 96.9 0.0038 8.3E-08 60.4 8.7 89 733-821 35-135 (168)
173 PRK02603 photosystem I assembl 96.9 0.0054 1.2E-07 59.5 9.7 79 736-814 38-121 (172)
174 cd00189 TPR Tetratricopeptide 96.9 0.0071 1.5E-07 51.3 9.4 88 665-757 3-92 (100)
175 PF14559 TPR_19: Tetratricopep 96.8 0.0011 2.3E-08 52.8 3.4 24 775-798 35-58 (68)
176 KOG2041 WD40 repeat protein [G 96.8 1.3 2.9E-05 49.9 27.3 203 527-771 849-1063(1189)
177 PRK15363 pathogenicity island 96.7 0.012 2.7E-07 54.2 9.8 91 636-728 40-134 (157)
178 PF05843 Suf: Suppressor of fo 96.7 0.034 7.4E-07 58.6 14.7 144 663-810 2-151 (280)
179 PF04840 Vps16_C: Vps16, C-ter 96.7 0.89 1.9E-05 48.6 25.2 105 534-654 181-285 (319)
180 PRK15331 chaperone protein Sic 96.7 0.019 4.1E-07 53.2 10.7 100 728-827 31-133 (165)
181 PF12895 Apc3: Anaphase-promot 96.7 0.0019 4.1E-08 54.0 3.9 78 675-758 2-83 (84)
182 PF14938 SNAP: Soluble NSF att 96.7 0.13 2.9E-06 54.4 18.8 98 711-808 129-241 (282)
183 PF13371 TPR_9: Tetratricopept 96.6 0.004 8.7E-08 50.3 5.6 55 773-827 3-57 (73)
184 PF14559 TPR_19: Tetratricopep 96.6 0.0034 7.3E-08 49.9 5.0 51 777-827 3-53 (68)
185 KOG1538 Uncharacterized conser 96.6 0.23 5E-06 55.2 19.8 229 385-690 602-845 (1081)
186 KOG3081 Vesicle coat complex C 96.6 0.24 5.1E-06 49.4 17.8 141 670-820 116-262 (299)
187 PF05843 Suf: Suppressor of fo 96.5 0.031 6.8E-07 58.9 12.9 137 563-703 3-146 (280)
188 PF12688 TPR_5: Tetratrico pep 96.5 0.036 7.8E-07 49.3 10.9 92 667-758 6-100 (120)
189 PF13281 DUF4071: Domain of un 96.4 0.29 6.3E-06 52.6 19.3 160 637-799 147-339 (374)
190 PF07079 DUF1347: Protein of u 96.3 2 4.4E-05 46.4 29.4 131 259-393 16-179 (549)
191 PF13414 TPR_11: TPR repeat; P 96.3 0.0054 1.2E-07 48.9 4.4 63 734-796 4-69 (69)
192 PF08579 RPM2: Mitochondrial r 96.3 0.031 6.8E-07 47.8 8.8 80 182-261 28-116 (120)
193 PF10037 MRP-S27: Mitochondria 96.3 0.044 9.6E-07 60.1 12.5 120 591-710 61-186 (429)
194 PRK10153 DNA-binding transcrip 96.3 0.052 1.1E-06 62.1 13.7 49 781-829 400-450 (517)
195 PF08579 RPM2: Mitochondrial r 96.3 0.015 3.3E-07 49.6 6.7 87 384-506 28-115 (120)
196 PF06239 ECSIT: Evolutionarily 96.2 0.057 1.2E-06 52.3 11.3 103 595-712 46-153 (228)
197 PF06239 ECSIT: Evolutionarily 96.2 0.045 9.7E-07 53.0 10.4 98 651-749 34-154 (228)
198 PF14938 SNAP: Soluble NSF att 96.2 0.82 1.8E-05 48.4 21.1 60 665-724 158-223 (282)
199 KOG2280 Vacuolar assembly/sort 96.1 2.4 5.3E-05 48.6 24.8 329 308-653 425-792 (829)
200 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.21 4.5E-06 54.4 16.1 211 661-877 74-329 (453)
201 KOG2796 Uncharacterized conser 96.1 0.25 5.4E-06 49.0 14.8 239 75-322 68-326 (366)
202 PF13428 TPR_14: Tetratricopep 96.0 0.009 2E-07 42.5 3.8 42 766-807 2-43 (44)
203 PF10037 MRP-S27: Mitochondria 96.0 0.072 1.6E-06 58.5 12.4 82 282-363 105-186 (429)
204 PF13371 TPR_9: Tetratricopept 96.0 0.018 3.8E-07 46.5 5.8 65 741-805 3-69 (73)
205 PRK10803 tol-pal system protei 96.0 0.048 1E-06 56.4 10.2 62 665-728 146-211 (263)
206 KOG2280 Vacuolar assembly/sort 95.9 4.7 0.0001 46.5 28.8 268 458-757 505-794 (829)
207 PF12688 TPR_5: Tetratrico pep 95.9 0.071 1.5E-06 47.5 9.6 82 740-821 8-97 (120)
208 PF12921 ATP13: Mitochondrial 95.8 0.068 1.5E-06 48.1 9.2 54 727-780 46-103 (126)
209 PRK10866 outer membrane biogen 95.8 1.5 3.3E-05 44.9 20.3 52 775-826 185-239 (243)
210 PLN03098 LPA1 LOW PSII ACCUMUL 95.7 0.036 7.9E-07 60.1 8.1 64 762-825 71-138 (453)
211 COG0457 NrfG FOG: TPR repeat [ 95.6 2.9 6.3E-05 42.1 24.2 192 631-826 59-263 (291)
212 PRK10803 tol-pal system protei 95.6 0.055 1.2E-06 56.0 9.0 90 736-825 146-243 (263)
213 KOG2796 Uncharacterized conser 95.6 0.35 7.5E-06 48.0 13.6 170 533-704 139-326 (366)
214 PRK11906 transcriptional regul 95.5 0.38 8.3E-06 52.5 15.0 156 663-822 252-430 (458)
215 PF03704 BTAD: Bacterial trans 95.0 0.26 5.7E-06 46.2 11.0 60 767-826 64-123 (146)
216 PRK10866 outer membrane biogen 94.9 1.1 2.4E-05 46.0 16.0 170 537-723 39-238 (243)
217 KOG2041 WD40 repeat protein [G 94.9 9.2 0.0002 43.6 27.2 149 329-518 748-901 (1189)
218 KOG1920 IkappaB kinase complex 94.8 1.5 3.3E-05 52.9 18.5 157 544-759 894-1052(1265)
219 KOG0550 Molecular chaperone (D 94.8 1.7 3.7E-05 46.3 16.7 239 539-820 178-435 (486)
220 KOG2114 Vacuolar assembly/sort 94.7 12 0.00025 44.0 28.9 175 254-458 339-519 (933)
221 COG4700 Uncharacterized protei 94.7 1.4 3E-05 41.6 14.0 50 770-820 165-214 (251)
222 KOG0543 FKBP-type peptidyl-pro 94.6 0.2 4.3E-06 53.3 9.6 83 766-874 258-340 (397)
223 KOG4555 TPR repeat-containing 94.6 0.2 4.4E-06 43.9 7.9 88 742-829 52-145 (175)
224 PF03704 BTAD: Bacterial trans 94.5 0.18 4E-06 47.2 8.7 70 664-735 64-138 (146)
225 smart00299 CLH Clathrin heavy 94.3 1.1 2.4E-05 41.5 13.3 68 696-776 68-136 (140)
226 KOG1130 Predicted G-alpha GTPa 94.3 0.31 6.7E-06 51.3 10.0 127 698-824 196-340 (639)
227 KOG3941 Intermediate in Toll s 94.2 0.33 7.2E-06 48.6 9.5 101 649-750 52-175 (406)
228 KOG2066 Vacuolar assembly/sort 94.0 15 0.00033 42.7 23.7 48 351-398 393-440 (846)
229 PRK11906 transcriptional regul 94.0 0.46 9.9E-06 52.0 11.0 113 712-824 273-397 (458)
230 PF13424 TPR_12: Tetratricopep 94.0 0.069 1.5E-06 43.7 3.9 26 664-689 7-32 (78)
231 COG4235 Cytochrome c biogenesi 93.8 0.47 1E-05 48.6 10.2 30 661-690 155-184 (287)
232 PF09205 DUF1955: Domain of un 93.6 2.8 6E-05 37.2 12.9 140 673-831 13-152 (161)
233 PF13525 YfiO: Outer membrane 93.5 2.7 5.9E-05 41.9 15.2 47 774-820 150-199 (203)
234 PRK12798 chemotaxis protein; R 93.5 11 0.00024 40.9 19.9 208 644-875 125-347 (421)
235 COG0457 NrfG FOG: TPR repeat [ 93.4 9.5 0.00021 38.2 22.3 193 600-797 63-268 (291)
236 COG5107 RNA14 Pre-mRNA 3'-end 93.3 15 0.00032 40.0 27.1 144 633-779 399-549 (660)
237 PF04053 Coatomer_WDAD: Coatom 93.2 0.71 1.5E-05 51.7 11.3 131 672-829 271-403 (443)
238 PF12921 ATP13: Mitochondrial 93.1 0.76 1.7E-05 41.4 9.4 94 632-741 3-96 (126)
239 PF08631 SPO22: Meiosis protei 93.1 7.3 0.00016 41.0 18.3 132 564-697 39-192 (278)
240 PF13424 TPR_12: Tetratricopep 93.1 0.11 2.3E-06 42.5 3.6 25 699-723 7-31 (78)
241 COG4105 ComL DNA uptake lipopr 92.8 12 0.00026 37.8 18.9 56 773-828 175-233 (254)
242 PF04184 ST7: ST7 protein; In 92.7 2.1 4.5E-05 47.0 13.4 219 674-911 180-412 (539)
243 KOG1130 Predicted G-alpha GTPa 92.5 0.61 1.3E-05 49.2 8.8 255 469-723 26-341 (639)
244 COG1729 Uncharacterized protei 92.3 0.77 1.7E-05 46.5 9.0 93 664-759 144-241 (262)
245 PF07079 DUF1347: Protein of u 92.2 21 0.00044 39.1 33.3 73 751-824 442-520 (549)
246 KOG4279 Serine/threonine prote 92.1 1.4 3E-05 50.2 11.5 184 564-799 204-400 (1226)
247 COG3118 Thioredoxin domain-con 92.1 2.6 5.5E-05 43.3 12.3 117 707-827 144-265 (304)
248 PF07719 TPR_2: Tetratricopept 91.5 0.39 8.5E-06 31.5 4.2 33 766-798 2-34 (34)
249 PF00515 TPR_1: Tetratricopept 91.5 0.3 6.4E-06 32.2 3.6 33 766-798 2-34 (34)
250 smart00299 CLH Clathrin heavy 91.4 8.2 0.00018 35.6 14.6 42 321-363 13-54 (140)
251 PF13525 YfiO: Outer membrane 91.2 8.1 0.00018 38.5 15.2 68 663-732 6-77 (203)
252 PF10300 DUF3808: Protein of u 90.9 1.3 2.8E-05 50.5 10.2 153 665-821 191-362 (468)
253 KOG1941 Acetylcholine receptor 90.5 3.5 7.5E-05 43.2 11.5 14 925-941 405-418 (518)
254 COG5107 RNA14 Pre-mRNA 3'-end 90.4 30 0.00066 37.7 29.6 67 246-312 39-108 (660)
255 KOG3941 Intermediate in Toll s 90.1 2.4 5.3E-05 42.7 9.8 113 369-510 53-173 (406)
256 KOG2114 Vacuolar assembly/sort 89.8 50 0.0011 39.2 29.0 141 153-302 339-485 (933)
257 PF13512 TPR_18: Tetratricopep 89.7 5.4 0.00012 36.5 11.0 19 781-799 115-133 (142)
258 KOG0543 FKBP-type peptidyl-pro 89.7 3.4 7.4E-05 44.3 11.1 91 736-826 260-353 (397)
259 PF04184 ST7: ST7 protein; In 89.6 7 0.00015 43.2 13.6 102 701-802 263-383 (539)
260 COG4785 NlpI Lipoprotein NlpI, 89.6 11 0.00024 36.7 13.3 179 641-827 75-265 (297)
261 KOG4234 TPR repeat-containing 89.2 2.5 5.5E-05 40.4 8.7 88 741-828 103-197 (271)
262 KOG4648 Uncharacterized conser 89.2 1.9 4E-05 44.6 8.5 109 671-819 106-215 (536)
263 PF00637 Clathrin: Region in C 89.2 0.12 2.7E-06 48.2 0.2 86 320-408 12-97 (143)
264 KOG1920 IkappaB kinase complex 89.1 38 0.00083 41.7 20.1 95 364-487 894-992 (1265)
265 PRK15331 chaperone protein Sic 89.0 1.6 3.4E-05 40.9 7.2 83 642-725 48-133 (165)
266 COG4105 ComL DNA uptake lipopr 89.0 27 0.00059 35.4 16.2 80 662-744 34-117 (254)
267 KOG2610 Uncharacterized conser 88.8 3.1 6.7E-05 43.0 9.6 159 674-835 115-283 (491)
268 PF13512 TPR_18: Tetratricopep 88.6 1.6 3.5E-05 39.8 6.9 59 742-800 19-82 (142)
269 PF13170 DUF4003: Protein of u 88.4 29 0.00064 36.7 17.3 135 578-742 79-226 (297)
270 PF09613 HrpB1_HrpK: Bacterial 88.4 9.5 0.00021 35.6 11.8 93 701-796 14-108 (160)
271 PRK09687 putative lyase; Provi 87.9 39 0.00084 35.6 23.1 203 560-775 67-277 (280)
272 PF13428 TPR_14: Tetratricopep 87.8 1.6 3.5E-05 30.7 5.2 34 663-698 2-35 (44)
273 PF14853 Fis1_TPR_C: Fis1 C-te 87.8 1.7 3.7E-05 32.1 5.3 35 771-805 7-41 (53)
274 PF00515 TPR_1: Tetratricopept 87.4 1.2 2.7E-05 29.1 4.2 32 663-696 2-33 (34)
275 COG3118 Thioredoxin domain-con 87.2 34 0.00073 35.4 15.8 155 668-825 140-299 (304)
276 COG1729 Uncharacterized protei 86.8 4.9 0.00011 40.9 9.8 95 707-801 151-251 (262)
277 KOG1941 Acetylcholine receptor 86.6 38 0.00083 35.9 15.9 91 563-653 85-184 (518)
278 COG3629 DnrI DNA-binding trans 86.0 3.4 7.4E-05 42.7 8.3 75 631-705 153-235 (280)
279 PF04053 Coatomer_WDAD: Coatom 86.0 17 0.00037 40.9 14.6 104 384-523 298-401 (443)
280 KOG4555 TPR repeat-containing 85.4 6.3 0.00014 34.9 8.3 85 672-758 53-140 (175)
281 COG3947 Response regulator con 85.3 24 0.00053 36.2 13.5 55 773-827 287-341 (361)
282 PF13176 TPR_7: Tetratricopept 85.1 1.9 4.1E-05 28.8 4.2 27 664-690 1-27 (36)
283 PF04097 Nic96: Nup93/Nic96; 85.0 57 0.0012 38.8 19.1 40 467-508 265-304 (613)
284 PF13176 TPR_7: Tetratricopept 84.9 1 2.2E-05 30.2 2.7 24 801-824 1-24 (36)
285 PF10300 DUF3808: Protein of u 84.7 9.1 0.0002 43.7 12.0 81 645-725 247-333 (468)
286 KOG1585 Protein required for f 83.8 51 0.0011 33.1 16.6 156 632-812 92-265 (308)
287 PF09613 HrpB1_HrpK: Bacterial 83.4 5.9 0.00013 37.0 7.8 54 776-829 21-74 (160)
288 PF08631 SPO22: Meiosis protei 83.2 65 0.0014 33.9 20.0 25 664-689 249-273 (278)
289 PF13181 TPR_8: Tetratricopept 83.0 1.9 4.2E-05 28.1 3.5 31 767-797 3-33 (34)
290 KOG0276 Vesicle coat complex C 82.9 12 0.00027 42.0 11.2 147 363-554 599-745 (794)
291 PF07719 TPR_2: Tetratricopept 82.8 2.7 6E-05 27.3 4.2 31 664-696 3-33 (34)
292 cd00923 Cyt_c_Oxidase_Va Cytoc 81.8 10 0.00022 31.8 7.7 67 753-831 30-96 (103)
293 PF02259 FAT: FAT domain; Int 81.2 88 0.0019 34.1 21.1 146 660-811 144-304 (352)
294 PF13281 DUF4071: Domain of un 81.0 90 0.002 34.1 18.7 174 567-764 147-337 (374)
295 COG3629 DnrI DNA-binding trans 80.7 10 0.00022 39.3 9.3 72 662-735 153-229 (280)
296 PRK10941 hypothetical protein; 80.4 8.3 0.00018 40.0 8.7 81 768-871 184-264 (269)
297 PF07035 Mic1: Colon cancer-as 79.6 57 0.0012 31.0 14.4 57 463-523 92-148 (167)
298 PF09205 DUF1955: Domain of un 79.5 47 0.001 29.9 13.8 136 471-627 13-151 (161)
299 TIGR02561 HrpB1_HrpK type III 79.1 7.6 0.00016 35.6 6.8 53 777-829 22-74 (153)
300 PRK11619 lytic murein transgly 78.7 1.5E+02 0.0033 35.4 29.2 261 534-807 103-384 (644)
301 PF02284 COX5A: Cytochrome c o 78.6 14 0.00031 31.3 7.7 68 752-831 32-99 (108)
302 KOG1258 mRNA processing protei 78.4 1.3E+02 0.0029 34.4 30.2 182 630-814 296-490 (577)
303 KOG2610 Uncharacterized conser 77.9 33 0.00071 35.9 11.6 146 574-722 116-272 (491)
304 KOG4570 Uncharacterized conser 77.3 17 0.00036 37.6 9.3 97 625-725 58-163 (418)
305 PF07035 Mic1: Colon cancer-as 77.1 69 0.0015 30.5 13.6 134 199-344 14-149 (167)
306 PF13170 DUF4003: Protein of u 76.9 52 0.0011 34.9 13.5 129 477-638 79-224 (297)
307 COG4649 Uncharacterized protei 76.8 32 0.00069 32.5 10.1 55 158-212 68-127 (221)
308 COG1747 Uncharacterized N-term 76.0 1.3E+02 0.0029 33.7 16.0 163 629-798 64-238 (711)
309 PF00637 Clathrin: Region in C 75.6 3.2 6.9E-05 38.6 3.8 85 220-307 13-97 (143)
310 PF13181 TPR_8: Tetratricopept 75.3 4.4 9.5E-05 26.3 3.4 31 664-696 3-33 (34)
311 PF10602 RPN7: 26S proteasome 74.9 20 0.00044 34.6 9.1 92 632-723 37-139 (177)
312 PF04097 Nic96: Nup93/Nic96; 74.8 1.9E+02 0.0041 34.5 21.2 29 461-489 325-356 (613)
313 PF02259 FAT: FAT domain; Int 74.6 58 0.0013 35.5 14.2 65 763-827 144-212 (352)
314 COG4455 ImpE Protein of avirul 74.2 65 0.0014 31.8 11.8 127 664-799 3-139 (273)
315 TIGR02561 HrpB1_HrpK type III 73.9 46 0.001 30.7 10.3 83 709-795 22-107 (153)
316 KOG1585 Protein required for f 73.4 1.1E+02 0.0023 30.9 13.8 194 604-822 39-250 (308)
317 KOG4570 Uncharacterized conser 72.5 22 0.00048 36.8 8.8 101 244-345 59-165 (418)
318 PF07721 TPR_4: Tetratricopept 72.5 4.4 9.5E-05 24.7 2.6 24 800-823 2-25 (26)
319 KOG1308 Hsp70-interacting prot 72.5 2.8 6E-05 43.7 2.6 86 746-831 127-214 (377)
320 TIGR02508 type_III_yscG type I 72.0 42 0.00092 28.4 8.7 61 639-702 47-107 (115)
321 PF13431 TPR_17: Tetratricopep 71.5 3.5 7.7E-05 27.1 2.1 18 699-716 15-32 (34)
322 KOG4648 Uncharacterized conser 70.9 4.6 9.9E-05 41.9 3.7 80 741-820 105-186 (536)
323 COG4649 Uncharacterized protei 70.6 99 0.0022 29.4 15.1 119 672-793 68-195 (221)
324 PF13374 TPR_10: Tetratricopep 70.0 10 0.00022 25.8 4.5 28 663-690 3-30 (42)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 69.6 28 0.0006 29.3 7.2 63 677-741 22-84 (103)
326 PF10602 RPN7: 26S proteasome 69.5 39 0.00085 32.7 9.7 59 182-240 39-99 (177)
327 PF02284 COX5A: Cytochrome c o 67.4 32 0.00069 29.3 7.2 61 679-741 27-87 (108)
328 PF15161 Neuropep_like: Neurop 67.1 2.6 5.6E-05 30.4 0.8 18 923-941 11-28 (65)
329 PF06552 TOM20_plant: Plant sp 66.5 13 0.00029 35.3 5.5 64 678-743 51-123 (186)
330 PF11207 DUF2989: Protein of u 66.5 22 0.00048 34.6 7.1 69 750-818 123-197 (203)
331 KOG4642 Chaperone-dependent E3 66.0 61 0.0013 32.5 9.9 78 644-723 23-104 (284)
332 TIGR02508 type_III_yscG type I 65.9 33 0.00071 29.1 6.9 60 256-318 46-105 (115)
333 KOG1550 Extracellular protein 65.4 1.3E+02 0.0029 35.3 14.9 88 748-837 343-435 (552)
334 KOG0276 Vesicle coat complex C 63.6 88 0.0019 35.7 11.8 23 464-486 725-747 (794)
335 PF13934 ELYS: Nuclear pore co 63.6 1.1E+02 0.0023 31.1 11.9 102 666-779 80-186 (226)
336 smart00028 TPR Tetratricopepti 63.2 11 0.00024 23.1 3.4 27 770-796 6-32 (34)
337 KOG0376 Serine-threonine phosp 62.9 12 0.00027 41.1 5.2 85 740-824 11-97 (476)
338 KOG1586 Protein required for f 62.6 1.7E+02 0.0038 29.3 14.0 97 712-808 129-240 (288)
339 PRK15180 Vi polysaccharide bio 62.5 39 0.00084 37.1 8.6 120 675-799 302-425 (831)
340 KOG4718 Non-SMC (structural ma 62.4 3.6 7.9E-05 39.3 1.0 11 923-933 179-189 (235)
341 PF13762 MNE1: Mitochondrial s 61.9 83 0.0018 29.1 9.6 51 177-227 77-128 (145)
342 PF07721 TPR_4: Tetratricopept 60.6 13 0.00028 22.6 3.0 21 737-757 5-25 (26)
343 PF04910 Tcf25: Transcriptiona 60.4 58 0.0012 35.7 10.0 64 764-827 99-167 (360)
344 KOG0292 Vesicle coat complex C 60.4 19 0.00042 42.4 6.4 123 675-832 606-728 (1202)
345 PF11768 DUF3312: Protein of u 59.6 67 0.0014 36.5 10.2 128 635-786 412-544 (545)
346 PF13934 ELYS: Nuclear pore co 59.2 72 0.0016 32.3 9.8 115 644-767 91-206 (226)
347 PF13174 TPR_6: Tetratricopept 58.2 14 0.0003 23.6 3.1 23 668-690 6-28 (33)
348 PRK11509 hydrogenase-1 operon 57.6 12 0.00026 33.9 3.4 68 842-926 34-102 (132)
349 PF06957 COPI_C: Coatomer (COP 57.5 39 0.00086 37.3 8.0 108 673-798 215-333 (422)
350 PRK09687 putative lyase; Provi 57.4 2.5E+02 0.0055 29.5 23.6 60 347-409 203-262 (280)
351 KOG2063 Vacuolar assembly/sort 57.2 3.8E+02 0.0083 33.0 16.5 128 181-327 506-638 (877)
352 PF14427 Pput2613-deam: Pput_2 56.9 25 0.00055 29.9 4.8 59 894-952 44-102 (118)
353 KOG0890 Protein kinase of the 56.3 7E+02 0.015 34.3 29.0 60 765-826 1670-1729(2382)
354 KOG0403 Neoplastic transformat 56.2 2.5E+02 0.0054 31.0 13.1 58 534-591 513-573 (645)
355 KOG3364 Membrane protein invol 56.1 1.6E+02 0.0035 26.8 10.5 34 771-804 77-110 (149)
356 PRK13800 putative oxidoreducta 55.8 5.2E+02 0.011 32.6 22.3 48 732-779 788-835 (897)
357 PF13374 TPR_10: Tetratricopep 54.6 22 0.00048 24.1 3.9 27 181-207 4-30 (42)
358 KOG0545 Aryl-hydrocarbon recep 53.8 1.3E+02 0.0029 30.2 9.9 45 777-821 242-286 (329)
359 smart00028 TPR Tetratricopepti 53.8 23 0.00049 21.6 3.7 27 664-690 3-29 (34)
360 KOG1586 Protein required for f 53.6 2.5E+02 0.0054 28.3 12.9 148 640-799 23-188 (288)
361 COG4976 Predicted methyltransf 52.9 18 0.0004 35.7 4.0 59 742-800 4-64 (287)
362 PF13929 mRNA_stabil: mRNA sta 52.2 2.6E+02 0.0056 29.2 12.2 113 474-586 142-263 (292)
363 KOG4234 TPR repeat-containing 51.5 1.2E+02 0.0026 29.5 9.0 22 669-690 102-123 (271)
364 PRK13342 recombination factor 51.5 3.2E+02 0.0069 30.7 14.4 112 196-325 154-275 (413)
365 PHA02875 ankyrin repeat protei 51.5 3.8E+02 0.0083 30.0 15.4 69 32-100 17-89 (413)
366 PF09670 Cas_Cas02710: CRISPR- 51.3 1.2E+02 0.0026 33.5 10.8 122 672-794 141-270 (379)
367 PF13174 TPR_6: Tetratricopept 50.3 24 0.00052 22.4 3.2 23 803-825 4-26 (33)
368 COG4785 NlpI Lipoprotein NlpI, 50.3 29 0.00064 34.0 4.9 105 706-816 74-181 (297)
369 KOG1464 COP9 signalosome, subu 50.1 3E+02 0.0065 28.2 13.0 229 543-778 40-317 (440)
370 KOG1258 mRNA processing protei 50.0 4.6E+02 0.01 30.3 27.9 180 529-711 296-489 (577)
371 COG3947 Response regulator con 49.9 2.4E+02 0.0051 29.4 11.2 40 512-553 150-189 (361)
372 PF11207 DUF2989: Protein of u 49.9 89 0.0019 30.6 8.1 42 675-716 153-197 (203)
373 KOG4642 Chaperone-dependent E3 48.4 43 0.00093 33.5 5.8 66 760-825 38-104 (284)
374 PF06552 TOM20_plant: Plant sp 47.8 34 0.00074 32.7 4.9 34 781-814 51-84 (186)
375 PF10345 Cohesin_load: Cohesin 47.7 5.6E+02 0.012 30.6 34.6 22 804-825 582-603 (608)
376 PRK14015 pepN aminopeptidase N 47.2 3.6E+02 0.0078 33.7 14.8 148 667-820 687-845 (875)
377 PF09477 Type_III_YscG: Bacter 47.0 1.9E+02 0.0042 25.0 9.0 87 611-701 21-107 (116)
378 COG4455 ImpE Protein of avirul 46.9 52 0.0011 32.4 5.9 63 739-801 7-71 (273)
379 TIGR02414 pepN_proteo aminopep 46.6 3.5E+02 0.0076 33.7 14.5 149 666-820 676-835 (863)
380 PF14853 Fis1_TPR_C: Fis1 C-te 46.5 57 0.0012 24.2 4.9 37 667-705 6-42 (53)
381 KOG3824 Huntingtin interacting 46.5 27 0.00059 35.9 4.2 62 743-804 126-189 (472)
382 PRK13342 recombination factor 46.0 2.9E+02 0.0062 31.1 13.0 48 562-609 228-278 (413)
383 TIGR01503 MthylAspMut_E methyl 46.0 67 0.0014 35.6 7.3 123 611-740 69-218 (480)
384 KOG2063 Vacuolar assembly/sort 46.0 6.7E+02 0.015 31.0 25.3 28 563-590 506-533 (877)
385 KOG3364 Membrane protein invol 45.6 81 0.0017 28.6 6.4 75 778-878 48-124 (149)
386 KOG0551 Hsp90 co-chaperone CNS 45.5 70 0.0015 33.7 7.0 91 733-823 81-177 (390)
387 PF04190 DUF410: Protein of un 45.3 3.7E+02 0.0081 27.9 14.2 37 528-564 88-124 (260)
388 PF14561 TPR_20: Tetratricopep 45.2 37 0.0008 28.5 4.3 36 786-821 9-44 (90)
389 KOG3824 Huntingtin interacting 45.1 31 0.00067 35.5 4.4 55 707-764 126-182 (472)
390 PHA02875 ankyrin repeat protei 43.8 5.1E+02 0.011 29.0 15.5 78 190-275 10-91 (413)
391 PF11838 ERAP1_C: ERAP1-like C 43.6 4.4E+02 0.0094 28.2 15.8 104 706-809 139-246 (324)
392 PF10366 Vps39_1: Vacuolar sor 42.9 1.8E+02 0.0039 25.4 8.4 27 462-488 41-67 (108)
393 KOG0686 COP9 signalosome, subu 42.9 4.9E+02 0.011 28.6 13.7 58 633-690 152-215 (466)
394 PF13762 MNE1: Mitochondrial s 42.5 2.1E+02 0.0045 26.6 8.9 49 697-746 79-128 (145)
395 PF15469 Sec5: Exocyst complex 42.4 1.4E+02 0.0029 29.0 8.5 88 702-805 91-179 (182)
396 KOG4077 Cytochrome c oxidase, 42.3 1.7E+02 0.0036 26.2 7.7 50 751-800 70-119 (149)
397 KOG2758 Translation initiation 41.4 4.5E+02 0.0099 27.8 12.5 165 616-794 20-196 (432)
398 PF04910 Tcf25: Transcriptiona 40.6 5.3E+02 0.011 28.3 14.6 97 696-796 99-224 (360)
399 PF10579 Rapsyn_N: Rapsyn N-te 40.5 47 0.001 26.8 3.9 46 674-719 18-65 (80)
400 PF11838 ERAP1_C: ERAP1-like C 40.4 4.9E+02 0.011 27.8 18.1 110 610-721 144-261 (324)
401 cd02965 HyaE HyaE family; HyaE 39.8 45 0.00098 29.2 4.1 71 838-926 23-94 (111)
402 PF10366 Vps39_1: Vacuolar sor 39.6 1.7E+02 0.0036 25.6 7.6 28 562-589 40-67 (108)
403 PF14863 Alkyl_sulf_dimr: Alky 38.9 97 0.0021 28.6 6.3 70 750-822 58-127 (141)
404 KOG1550 Extracellular protein 38.3 7.2E+02 0.016 29.2 19.0 44 677-722 379-422 (552)
405 PF10579 Rapsyn_N: Rapsyn N-te 38.2 73 0.0016 25.8 4.6 48 709-756 18-66 (80)
406 KOG0991 Replication factor C, 38.2 3.3E+02 0.0072 27.4 9.9 135 256-414 137-271 (333)
407 PF08225 Antimicrobial19: Pseu 38.2 22 0.00048 20.0 1.2 12 929-940 10-21 (23)
408 PRK10941 hypothetical protein; 38.1 1.5E+02 0.0032 30.9 8.3 66 739-804 187-254 (269)
409 PF07720 TPR_3: Tetratricopept 37.9 62 0.0013 21.7 3.6 32 767-798 3-36 (36)
410 PF11663 Toxin_YhaV: Toxin wit 37.3 36 0.00077 30.7 3.1 32 191-224 107-138 (140)
411 PF09477 Type_III_YscG: Bacter 37.1 2.2E+02 0.0047 24.7 7.4 78 230-310 22-99 (116)
412 KOG4507 Uncharacterized conser 37.1 1.1E+02 0.0024 34.8 7.3 72 739-810 648-721 (886)
413 cd00280 TRFH Telomeric Repeat 36.6 2.5E+02 0.0055 27.1 8.6 36 770-806 116-151 (200)
414 KOG1498 26S proteasome regulat 36.4 6.1E+02 0.013 27.8 17.4 199 629-852 50-265 (439)
415 TIGR02710 CRISPR-associated pr 36.2 5.3E+02 0.011 28.4 12.3 30 670-699 138-167 (380)
416 TIGR03504 FimV_Cterm FimV C-te 35.7 63 0.0014 22.8 3.5 25 466-490 5-29 (44)
417 PF09986 DUF2225: Uncharacteri 35.4 1.4E+02 0.003 29.9 7.4 63 765-827 118-193 (214)
418 KOG2034 Vacuolar sorting prote 35.0 9.3E+02 0.02 29.5 23.0 50 533-587 507-556 (911)
419 PF11663 Toxin_YhaV: Toxin wit 34.9 37 0.0008 30.6 2.8 32 674-707 107-138 (140)
420 PF07575 Nucleopor_Nup85: Nup8 34.0 8.5E+02 0.018 28.7 15.6 70 451-522 396-465 (566)
421 KOG3507 DNA-directed RNA polym 33.7 11 0.00025 27.7 -0.4 10 925-934 20-29 (62)
422 COG5159 RPN6 26S proteasome re 33.6 5.7E+02 0.012 26.6 11.7 153 571-723 13-191 (421)
423 KOG2471 TPR repeat-containing 33.2 5.7E+02 0.012 28.8 11.7 103 775-885 216-329 (696)
424 KOG2659 LisH motif-containing 32.4 5.3E+02 0.012 25.9 10.7 91 665-758 29-128 (228)
425 smart00386 HAT HAT (Half-A-TPR 31.7 69 0.0015 19.9 3.2 28 779-806 1-28 (33)
426 COG2976 Uncharacterized protei 31.7 5.1E+02 0.011 25.4 14.0 90 705-799 97-193 (207)
427 PF14561 TPR_20: Tetratricopep 31.5 3E+02 0.0064 23.1 7.6 62 765-826 22-86 (90)
428 PF01147 Crust_neurohorm: Crus 31.1 13 0.00029 29.4 -0.5 13 923-935 18-30 (73)
429 TIGR03504 FimV_Cterm FimV C-te 30.5 1E+02 0.0022 21.8 3.9 25 668-692 5-29 (44)
430 KOG4077 Cytochrome c oxidase, 30.4 2.2E+02 0.0047 25.5 6.5 60 680-741 67-126 (149)
431 COG4890 Predicted outer membra 30.1 28 0.0006 22.5 0.9 10 903-912 11-20 (37)
432 PF13971 Mei4: Meiosis-specifi 29.6 27 0.00058 37.6 1.3 29 893-921 12-41 (375)
433 PF11525 CopK: Copper resistan 29.4 20 0.00044 27.6 0.3 20 944-963 8-27 (73)
434 PF09045 L27_2: L27_2; InterP 29.2 89 0.0019 23.4 3.4 35 860-914 4-38 (58)
435 PF11848 DUF3368: Domain of un 29.0 1.5E+02 0.0033 21.3 4.7 34 189-222 12-45 (48)
436 PRK15180 Vi polysaccharide bio 29.0 4.4E+02 0.0094 29.4 10.0 138 710-852 302-442 (831)
437 COG3019 Predicted metal-bindin 28.9 80 0.0017 28.5 3.8 47 903-951 8-58 (149)
438 PF11846 DUF3366: Domain of un 28.0 1.3E+02 0.0028 29.5 5.8 36 761-796 140-175 (193)
439 PF05119 Terminase_4: Phage te 28.0 1.4E+02 0.0031 25.3 5.4 40 852-891 57-96 (100)
440 PF11846 DUF3366: Domain of un 28.0 1.4E+02 0.003 29.3 6.0 32 693-724 140-171 (193)
441 PF15015 NYD-SP12_N: Spermatog 28.0 1.1E+02 0.0024 33.3 5.4 43 777-819 240-282 (569)
442 KOG0292 Vesicle coat complex C 27.9 8.9E+02 0.019 29.6 12.7 154 615-793 623-781 (1202)
443 PF13929 mRNA_stabil: mRNA sta 27.7 7.3E+02 0.016 26.0 13.6 52 347-398 199-255 (292)
444 TIGR00686 phnA alkylphosphonat 27.6 17 0.00037 30.9 -0.4 31 923-953 17-48 (109)
445 PF14689 SPOB_a: Sensor_kinase 27.5 91 0.002 24.0 3.6 29 697-725 23-51 (62)
446 KOG0890 Protein kinase of the 27.3 1.9E+03 0.04 30.6 32.7 104 699-806 1672-1796(2382)
447 cd08819 CARD_MDA5_2 Caspase ac 26.8 1.4E+02 0.0031 24.7 4.7 63 29-96 21-86 (88)
448 PRK11639 zinc uptake transcrip 26.4 96 0.0021 29.7 4.4 58 3-61 19-76 (169)
449 COG0735 Fur Fe2+/Zn2+ uptake r 26.2 89 0.0019 29.0 4.0 58 2-60 13-70 (145)
450 PF04123 DUF373: Domain of unk 26.2 3E+02 0.0065 29.8 8.3 83 782-892 28-112 (344)
451 PHA03100 ankyrin repeat protei 25.6 9.2E+02 0.02 27.5 13.4 208 199-418 48-280 (480)
452 COG3058 FdhE Uncharacterized p 25.5 38 0.00082 34.4 1.4 18 926-943 253-270 (308)
453 PF10345 Cohesin_load: Cohesin 25.5 1.2E+03 0.026 27.8 31.1 30 661-690 571-605 (608)
454 PF04090 RNA_pol_I_TF: RNA pol 25.2 5.7E+02 0.012 25.2 9.3 131 662-809 41-188 (199)
455 PRK10564 maltose regulon perip 25.1 1.2E+02 0.0026 31.7 5.0 45 660-704 254-299 (303)
456 COG2912 Uncharacterized conser 25.0 3.2E+02 0.007 28.2 7.9 53 773-825 189-241 (269)
457 KOG2297 Predicted translation 24.9 8.3E+02 0.018 25.7 14.1 159 639-820 174-342 (412)
458 PF07163 Pex26: Pex26 protein; 24.9 3.6E+02 0.0078 28.0 8.0 20 186-205 90-109 (309)
459 PF11768 DUF3312: Protein of u 24.7 4.9E+02 0.011 29.9 9.9 27 282-308 410-436 (545)
460 KOG1515 Arylacetamide deacetyl 24.6 1.5E+02 0.0032 32.0 5.8 47 816-866 283-329 (336)
461 PF07163 Pex26: Pex26 protein; 24.4 4.6E+02 0.01 27.3 8.7 21 467-487 90-110 (309)
462 PRK14700 recombination factor 24.1 8.7E+02 0.019 25.7 11.5 139 394-555 78-226 (300)
463 KOG1497 COP9 signalosome, subu 24.0 3.6E+02 0.0078 28.5 7.9 21 803-823 107-127 (399)
464 PF11848 DUF3368: Domain of un 24.0 2.2E+02 0.0048 20.5 4.8 35 469-503 11-45 (48)
465 PF14689 SPOB_a: Sensor_kinase 23.9 92 0.002 23.9 3.0 30 661-690 22-51 (62)
466 PF08967 DUF1884: Domain of un 23.8 85 0.0018 25.4 2.7 25 859-883 8-32 (85)
467 PRK13800 putative oxidoreducta 23.5 1.6E+03 0.034 28.4 21.1 239 169-429 625-865 (897)
468 COG4472 Uncharacterized protei 23.4 1.5E+02 0.0033 23.7 4.0 38 843-883 5-42 (88)
469 PF12862 Apc5: Anaphase-promot 23.1 1.4E+02 0.0031 25.1 4.4 48 776-823 9-65 (94)
470 KOG0119 Splicing factor 1/bran 22.9 1.3E+02 0.0028 33.4 4.9 91 843-967 203-294 (554)
471 PF02847 MA3: MA3 domain; Int 22.8 2.3E+02 0.005 24.6 5.9 21 567-587 8-28 (113)
472 KOG2471 TPR repeat-containing 22.6 9E+02 0.02 27.3 10.9 34 777-811 521-554 (696)
473 PF10925 DUF2680: Protein of u 22.5 94 0.002 23.7 2.7 29 851-879 31-59 (59)
474 PHA02537 M terminase endonucle 22.5 5.9E+02 0.013 25.8 9.1 36 661-697 83-119 (230)
475 PF04034 DUF367: Domain of unk 22.3 4.9E+02 0.011 23.5 7.4 65 727-791 60-125 (127)
476 KOG4334 Uncharacterized conser 22.3 57 0.0012 35.8 2.1 127 411-543 410-573 (650)
477 COG5431 Uncharacterized metal- 22.0 27 0.00059 29.3 -0.2 11 957-967 47-57 (117)
478 PF08311 Mad3_BUB1_I: Mad3/BUB 21.8 5.9E+02 0.013 22.9 8.3 43 614-656 81-124 (126)
479 COG5108 RPO41 Mitochondrial DN 21.8 4.3E+02 0.0094 30.8 8.7 120 386-557 33-160 (1117)
480 PRK10564 maltose regulon perip 21.8 1.4E+02 0.003 31.4 4.6 41 462-502 259-299 (303)
481 KOG2422 Uncharacterized conser 21.8 4.5E+02 0.0097 30.3 8.7 35 776-810 353-388 (665)
482 cd08819 CARD_MDA5_2 Caspase ac 21.6 4.8E+02 0.01 21.8 6.7 39 362-401 48-86 (88)
483 PF12069 DUF3549: Protein of u 21.4 1E+03 0.023 25.6 11.7 89 153-243 171-259 (340)
484 PF14376 Haem_bd: Haem-binding 20.9 28 0.0006 32.0 -0.5 8 926-933 42-49 (137)
485 PF14669 Asp_Glu_race_2: Putat 20.5 8.1E+02 0.018 24.0 14.9 93 555-657 101-207 (233)
486 COG2976 Uncharacterized protei 20.4 8.3E+02 0.018 24.0 12.5 87 606-692 99-189 (207)
487 KOG4334 Uncharacterized conser 20.3 38 0.00083 37.0 0.4 100 59-161 461-573 (650)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8.4e-165 Score=1506.76 Aligned_cols=810 Identities=36% Similarity=0.655 Sum_probs=786.0
Q ss_pred CCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchh
Q 040643 73 KRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISN 152 (968)
Q Consensus 73 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 152 (968)
.++..++|.++.+|++.|.+++|+.+|++|.+.|+.|+..+|..++++|...+... .+.++|..+++.+..++..++|
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~n 125 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVE--EGSRVCSRALSSHPSLGVRLGN 125 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHH--HHHHHHHHHHHcCCCCCchHHH
Confidence 55777899999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHH
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEI 232 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 232 (968)
+|+.+|+++|+++.|.++|++|+.||+++||+||.+|++.|++++|+++|++|...|+.||.+||++++++|+..+++..
T Consensus 126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~ 205 (857)
T PLN03077 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR 205 (857)
T ss_pred HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccC
Q 040643 233 GEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLK 312 (968)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 312 (968)
++++|..+++.|+.||+.++|+||.+|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|.+|.+.|+.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~ 285 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVD 285 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHH
Q 040643 313 PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYG 392 (968)
Q Consensus 313 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 392 (968)
||..||++++.+|++.|+++.|+++|..+.+.|+.||..++|+||++|+++|++++|.++|++|..||+++
T Consensus 286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s--------- 356 (857)
T PLN03077 286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS--------- 356 (857)
T ss_pred CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee---------
Confidence 99999999999999999999999999999999999999999999999999999999999999988777664
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHh
Q 040643 393 QLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQ 472 (968)
Q Consensus 393 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 472 (968)
||+||.+|++
T Consensus 357 ----------------------------------------------------------------------~n~li~~~~~ 366 (857)
T PLN03077 357 ----------------------------------------------------------------------WTAMISGYEK 366 (857)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHh
Confidence 5555555555
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666677777777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChh
Q 040643 553 FNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETE 632 (968)
Q Consensus 553 f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 632 (968)
|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.|+++|..+.+.|+.+|..
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~ 525 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGF 525 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccce
Confidence 9999999999999999999999999999999999985 699999999999999999999999999999999999999999
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
++|+||++|+|||++++|.++|+.+ +||+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||++++.+|++.|+
T Consensus 526 ~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~ 604 (857)
T PLN03077 526 LPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM 604 (857)
T ss_pred echHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh
Confidence 9999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLL 792 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 792 (968)
+++|+++|++|.+++|+.|+.+||+||||+|+|+|+++||++++++||++||..+|++|+++|+.|||+++|+.++++++
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~ 684 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIF 684 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99999999999989999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 040643 793 ELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRV 872 (968)
Q Consensus 793 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 872 (968)
+++|+++++|++|+|+|+..|+|++|.++|+.|+++|++|+|||||||++|++|.|++||++||++++||.+|++|..+|
T Consensus 685 ~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 764 (857)
T PLN03077 685 ELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKM 764 (857)
T ss_pred hhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCCCCEEEecccccCChhhHHHHHHHHhhcceEEEecCC
Q 040643 873 AEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDAN 952 (968)
Q Consensus 873 ~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 952 (968)
++.||+||+++++ |++||+||+.|++||||||||||||+||||+||||+||||||+|||+++||||||++|||||||++
T Consensus 765 ~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~ 843 (857)
T PLN03077 765 KASGLAGSESSSM-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTE 843 (857)
T ss_pred HhCCcCCCcchhc-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCC
Confidence 9999999999999 458899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCCC
Q 040643 953 RFHHFEGGVCSCRD 966 (968)
Q Consensus 953 ~~h~f~~g~csc~d 966 (968)
|||||+||+|||||
T Consensus 844 rfh~f~~g~csc~d 857 (857)
T PLN03077 844 QFHHFKDGECSCGD 857 (857)
T ss_pred cceeCCCCcccCCC
Confidence 99999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-135 Score=1217.74 Aligned_cols=613 Identities=38% Similarity=0.712 Sum_probs=594.0
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccc-cCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhH
Q 040643 277 QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDC-LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGS 355 (968)
Q Consensus 277 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 355 (968)
.++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.+.++|..+.+.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 4578899999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhh
Q 040643 356 MLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLG 435 (968)
Q Consensus 356 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 435 (968)
|+++|+++|++++|.++|++|++||+++|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~--------------------------------------------------- 192 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASW--------------------------------------------------- 192 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeH---------------------------------------------------
Confidence 99999999999999999999888777655
Q ss_pred HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhh
Q 040643 436 EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGR 515 (968)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 515 (968)
|+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.++
T Consensus 193 ----------------------------n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 193 ----------------------------GTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred ----------------------------HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 5555555555666667777777777888999999999999999999999999
Q ss_pred hhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 516 QIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 516 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|.+.|+.||
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
..||++++.+|++.|.+++|+++|..+.+.|+.+|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|+++
T Consensus 325 ~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~ 404 (697)
T PLN03081 325 QFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNH 404 (697)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
|+.++|+++|++|.+.|+.||.+||++++++|++.|++++|.++|+.|.+++|+.|+..||+|||++|+|+|++++|.++
T Consensus 405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~ 484 (697)
T PLN03081 405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM 484 (697)
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCc
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPG 835 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g 835 (968)
+++||++|+..+|++|+++|+.+|+++.|+.+++++++++|++.++|+.|+|+|++.|+|++|.++++.|+++|++|.||
T Consensus 485 ~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g 564 (697)
T PLN03081 485 IRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPA 564 (697)
T ss_pred HHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCC
Q 040643 836 QSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSD 915 (968)
Q Consensus 836 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~ 915 (968)
|||||+++++|.|++||++||+.++||.+|++|..+|++.||+||+++++||++||+|++.|++||||||||||||+|||
T Consensus 565 ~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~~ 644 (697)
T PLN03081 565 CTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTSE 644 (697)
T ss_pred eeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEecccccCChhhHHHHHHHHhhcceEEEecCCcccccCCCcCCCCCCC
Q 040643 916 SMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCSCRDYW 968 (968)
Q Consensus 916 ~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~csc~d~w 968 (968)
|+||||+||||||+|||+++||||||+||||||||++|||||+||+|||||||
T Consensus 645 ~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 645 WTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.2e-94 Score=882.87 Aligned_cols=649 Identities=29% Similarity=0.498 Sum_probs=619.9
Q ss_pred CccCCCCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCCCCccchH
Q 040643 1 MEERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWN 80 (968)
Q Consensus 1 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~ 80 (968)
|.+.|+.|+..+|..++++|.+.+.+..|.++|..+++.+..++..++|.++.+|+++|+++.|+++|++|+.||+++||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHh
Q 040643 81 KLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAK 160 (968)
Q Consensus 81 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~ 160 (968)
++|.+|++.|++++|+++|++|...|+.||.+||+.+|++|+..+++. .++++|..+++.|+.||++++|+||.+|++
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k 234 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLA--RGREVHAHVVRFGFELDVDVVNALITMYVK 234 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchh--hHHHHHHHHHHcCCCcccchHhHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred cCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHH
Q 040643 161 NGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240 (968)
Q Consensus 161 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 240 (968)
+|++++|.++|++|+.||.++||+||.+|+++|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|+++|..+
T Consensus 235 ~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~ 314 (857)
T PLN03077 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314 (857)
T ss_pred CCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHH
Q 040643 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVAS 320 (968)
Q Consensus 241 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 320 (968)
.+.|+.||+.+||+||.+|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++
T Consensus 315 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ 394 (857)
T PLN03077 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394 (857)
T ss_pred HHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHH
Q 040643 321 LVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSES 400 (968)
Q Consensus 321 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 400 (968)
++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+++|++++|.++|++|.++|+++||+||.+|+
T Consensus 395 ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~-------- 466 (857)
T PLN03077 395 VLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR-------- 466 (857)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH--------
Confidence 999999999999999999999999999999999999999999999999999999988887775555555555
Q ss_pred HHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHH
Q 040643 401 FQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEAL 480 (968)
Q Consensus 401 ~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 480 (968)
++|+.++|+
T Consensus 467 -----------------------------------------------------------------------~~g~~~eA~ 475 (857)
T PLN03077 467 -----------------------------------------------------------------------LNNRCFEAL 475 (857)
T ss_pred -----------------------------------------------------------------------HCCCHHHHH
Confidence 455555666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC
Q 040643 481 ELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD 560 (968)
Q Consensus 481 ~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d 560 (968)
.+|++|.. ++.||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+|+++|+|+|++++|.++|+.+ .+|
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d 553 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKD 553 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCC
Confidence 66666654 5899999999999999999999999999999999999999999999999999999999999999999 899
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHH-HhCCCCChhHHhHHhh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMII-KTGYDSETEASNSLIT 639 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~ 639 (968)
+++||+||.+|+++|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.++++.|. +.|+.|+..+|+++++
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~ 633 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998 6899999999999999
Q ss_pred HHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~ 717 (968)
+|+++|++++|.++|++|+ +||..+|++|+.+|..+|+.+.+....+++.+ +.|+.. +|..+.+.|...|+++++.
T Consensus 634 ~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~--l~p~~~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 634 LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFE--LDPNSVGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred HHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCcchHHHHHHHHHHCCChHHHH
Confidence 9999999999999999997 89999999999999999999999999999998 788755 5777778999999999999
Q ss_pred HHHHHhhhhcCCCCCcch
Q 040643 718 RYFESMSTEYGLVPKPEH 735 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~~~~ 735 (968)
++.+.|++. |+++++..
T Consensus 712 ~vr~~M~~~-g~~k~~g~ 728 (857)
T PLN03077 712 RVRKTMREN-GLTVDPGC 728 (857)
T ss_pred HHHHHHHHc-CCCCCCCc
Confidence 999999665 88887543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3e-69 Score=646.20 Aligned_cols=476 Identities=27% Similarity=0.418 Sum_probs=447.4
Q ss_pred CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcC-CCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHH
Q 040643 175 CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILG-TVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCN 253 (968)
Q Consensus 175 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 253 (968)
..++.++|+++|.+|.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++++.++++|..+.+.|+.||+.+||
T Consensus 83 ~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 34577899999999999999999999999998864 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHH
Q 040643 254 ALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRT 333 (968)
Q Consensus 254 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 333 (968)
.|+++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..|+.+.
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~ 242 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLT 413 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 413 (968)
++++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|
T Consensus 243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y---------------------- 300 (697)
T PLN03081 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGY---------------------- 300 (697)
T ss_pred HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHH----------------------
Confidence 9999999999999999999999999999999999999999999888777555555555
Q ss_pred CCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 040643 414 PNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQS 493 (968)
Q Consensus 414 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 493 (968)
++.|++++|+++|++|.+.|+.|
T Consensus 301 ---------------------------------------------------------~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 301 ---------------------------------------------------------ALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred ---------------------------------------------------------HhCCCHHHHHHHHHHHHHcCCCC
Confidence 55555566666677777778889
Q ss_pred ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHh
Q 040643 494 DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQ 573 (968)
Q Consensus 494 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~ 573 (968)
|..||++++.+|++.|.++.|+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH-hCCCCChhHHhHHhhHHHhcCCHHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIK-TGYDSETEASNSLITLYAKCGSIDDAKR 652 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~ 652 (968)
+|+.++|+++|++|.+.|+.||.+||+++|.+|++.|.+++|.+++..|.+ .|+.|+..+|+++|++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999986 7999999999999999999999999999
Q ss_pred HHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCC
Q 040643 653 EFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLV 730 (968)
Q Consensus 653 ~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 730 (968)
+|++|+ .||..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.|++.|.+.|++++|.++++.|.+. |++
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~ 560 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLS 560 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCc
Confidence 999998 89999999999999999999999999999976 7786 569999999999999999999999999665 775
Q ss_pred CC
Q 040643 731 PK 732 (968)
Q Consensus 731 p~ 732 (968)
+.
T Consensus 561 k~ 562 (697)
T PLN03081 561 MH 562 (697)
T ss_pred cC
Confidence 43
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.9e-68 Score=635.10 Aligned_cols=528 Identities=16% Similarity=0.246 Sum_probs=435.5
Q ss_pred CCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeeh-----HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 040643 145 GGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVS-----WVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISS 219 (968)
Q Consensus 145 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 219 (968)
.++...+..++..|+++|++++|.++|++|+.++.+. ++.++.+|.+.|..++|+.+|+.|.. ||..||+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 3455667778888888888888888888887665544 44556678888888888888888864 88888888
Q ss_pred HHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC----CCCcccHHHHHHHHHcCCC
Q 040643 220 ALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ----QRDGVTYNSLISGLAQCGY 295 (968)
Q Consensus 220 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~ 295 (968)
+|.+|++.|+++.|.++|..|.+.|+.||..+||+||.+|+++|++++|.++|++|. .||+++||+||.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 888888888888888888888888888888888888888888888888888888887 4688888888888888888
Q ss_pred hhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHH--hCCCCChhhHhHHHHHHHhcCChhHHHHHH
Q 040643 296 SDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIK--VGISKDIIVEGSMLDLYVKCSDVETAYKFF 373 (968)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 373 (968)
+++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|+.|.+ .|+.||
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD------------------------ 578 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD------------------------ 578 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc------------------------
Confidence 888888888888888888888888888888888888888888877765 345555
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh
Q 040643 374 LTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR 453 (968)
Q Consensus 374 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 453 (968)
.++|+++|.+|++.|++++|.++|++|.+.|+.|+
T Consensus 579 -------~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~-------------------------------------- 613 (1060)
T PLN03218 579 -------HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT-------------------------------------- 613 (1060)
T ss_pred -------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC--------------------------------------
Confidence 45555555555555666666666666776666654
Q ss_pred hCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 454 RLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 454 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.+++..|.+.|+.||..+|
T Consensus 614 ------~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ty 687 (1060)
T PLN03218 614 ------PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSY 687 (1060)
T ss_pred ------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 44667788888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCC----CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 534 NALISLYARCGRIQEAYLVFNKID----AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.
T Consensus 688 nsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 688 SSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK 767 (1060)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 999999999999999999999995 6799999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhH----HHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITL----YAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~----y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
|+++.|.++|..|.+.|+.||..+|++|+++ |.+++.+.++...|+.+..++...|+ ++|+.+|
T Consensus 768 G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al~lf 835 (1060)
T PLN03218 768 DDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWALMVY 835 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHHHHH
Confidence 9999999999999999999999999999987 45666666666666655555555665 4599999
Q ss_pred HHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCC
Q 040643 686 EKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---PIE 762 (968)
Q Consensus 686 ~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~ 762 (968)
++|++.|+.||.+||..++.++...+.++.+..+++.|... +..|+..+|+++++.+++. .++|..++++| ++.
T Consensus 836 ~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~ 912 (1060)
T PLN03218 836 RETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVV 912 (1060)
T ss_pred HHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCC
Confidence 99999999999999999997766777777766666666322 4556677899999988543 46899999999 778
Q ss_pred CCHH
Q 040643 763 PDAM 766 (968)
Q Consensus 763 p~~~ 766 (968)
|+..
T Consensus 913 p~~~ 916 (1060)
T PLN03218 913 PSVS 916 (1060)
T ss_pred CCcc
Confidence 8754
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.2e-66 Score=623.23 Aligned_cols=528 Identities=17% Similarity=0.286 Sum_probs=435.2
Q ss_pred CCCCcccchhhHHhhhhCCCcchHHHhhhccCCCCccc-----hHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHH
Q 040643 41 FDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFS-----WNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFV 115 (968)
Q Consensus 41 ~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~-----~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 115 (968)
..++...+..++..++++|++++|+++|++|+.++... ++.++.+|.+.|..++|+.+|..|.. |+..||+
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn 441 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFN 441 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHH
Confidence 34566778889999999999999999999998876654 45567779999999999999999974 9999999
Q ss_pred HHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCC----CCCeehHHHHHHHHHc
Q 040643 116 GVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLC----FKDSVSWVAMISGFSQ 191 (968)
Q Consensus 116 ~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~ 191 (968)
.+|++|++.++.. .+.++|..|.+.|+.||.++||+||.+|+++|+++.|.++|++|. .||.++||+||.+|++
T Consensus 442 ~LL~a~~k~g~~e--~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 442 MLMSVCASSQDID--GALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHHHHHhCcCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999999999999999999995 6899999999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHH--hcCCCchhHHHHHHHHhhccCChhHHH
Q 040643 192 NGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFK--WGFSSETFVCNALVTLYSRSGNLTSAE 269 (968)
Q Consensus 192 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~ 269 (968)
.|++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++||.+|+++|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999987 578999999999999999999999999
Q ss_pred HHHhhCCC----CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040643 270 QIFSKMQQ----RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVG 345 (968)
Q Consensus 270 ~~f~~m~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 345 (968)
++|++|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999975 46689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhh
Q 040643 346 ISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT 425 (968)
Q Consensus 346 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 425 (968)
+.||..+|++||++|+++|++++|.++|++| ...|+.|
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM-------------------------------~~~g~~P----------- 717 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDI-------------------------------KSIKLRP----------- 717 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------------------------------HHcCCCC-----------
Confidence 9888877777777777777666666665554 4333333
Q ss_pred hccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 040643 426 CTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC 505 (968)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 505 (968)
|.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|
T Consensus 718 ---------------------------------dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 718 ---------------------------------TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred ---------------------------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 33355666666666666666666666666666777777777777777
Q ss_pred hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH----HHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHH
Q 040643 506 AGIQALNQGRQIHAQSYISGFSDDLSIGNALISL----YARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGAL 581 (968)
Q Consensus 506 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~----y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 581 (968)
++.|+++.|.++|..|.+.|+.||..+|++|+.+ |.+++...++...|+.+...+...|+ ++|+
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~------------~~Al 832 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT------------SWAL 832 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH------------HHHH
Confidence 7777777777777777777777777777777665 44555555555556555444555555 4599
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---
Q 040643 582 QVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--- 658 (968)
Q Consensus 582 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 658 (968)
.+|++|.+.|+.||..||+.+|.++.. .+..+.+..+++.|.
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~-----------------------------------~~~~~~~~~m~~~m~~~~ 877 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQL-----------------------------------PHDATLRNRLIENLGISA 877 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcc-----------------------------------cccHHHHHHHHHHhccCC
Confidence 999999999999999999888844333 333445555555543
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 040643 659 -EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698 (968)
Q Consensus 659 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 698 (968)
.|+..+||++|.++.+. .++|+.+|++|.+.|+.|+..
T Consensus 878 ~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 878 DSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred CCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 45677888888887433 468999999999999999865
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.9e-39 Score=404.18 Aligned_cols=799 Identities=13% Similarity=0.052 Sum_probs=498.4
Q ss_pred CChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCCC----CccchHHHH
Q 040643 8 ANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKR----TVFSWNKLI 83 (968)
Q Consensus 8 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~----~~~~~~~li 83 (968)
.++..+..+-..+...|++++|...+.++.+.++.+ ......+...|...|++++|...|...... ....+..+.
T Consensus 54 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 132 (899)
T TIGR02917 54 NDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPK-NQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRG 132 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCh-hhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHH
Confidence 455566667777888899999999999988877643 344456677788888888888888766521 234666777
Q ss_pred HHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCC
Q 040643 84 SGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGF 163 (968)
Q Consensus 84 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 163 (968)
..+...|++++|...|+++.+.... +...+..+...+...|+.. .+..+...+++.. +.+...+..+...+.+.|+
T Consensus 133 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~--~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~ 208 (899)
T TIGR02917 133 LAYLGLGQLELAQKSYEQALAIDPR-SLYAKLGLAQLALAENRFD--EARALIDEVLTAD-PGNVDALLLKGDLLLSLGN 208 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHCCCHH--HHHHHHHHHHHhC-CCChHHHHHHHHHHHhcCC
Confidence 7888888888898888888765432 3345666667777788887 7777777776643 3445566777777888888
Q ss_pred chHHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHH
Q 040643 164 IDSAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLI 240 (968)
Q Consensus 164 ~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 240 (968)
++.|...|+.. ...+...|..++..+...|++++|...++.+.+.... +..........+...|+++.|...+..+
T Consensus 209 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 209 IELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN-SPLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888765 2335567777788888888888888888887765322 2222222222334567777777777776
Q ss_pred HHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC--C-CcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCccc
Q 040643 241 FKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ--R-DGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVT 317 (968)
Q Consensus 241 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 317 (968)
.+.+.. +...+..+...+...|++++|...|++..+ | +...+..+...+.+.|++++|+..+.++.... ..+...
T Consensus 288 l~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 365 (899)
T TIGR02917 288 LKSAPE-YLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAA 365 (899)
T ss_pred HHhCCC-chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 665422 122233344556667777777777766542 2 34456666667777777777777777765442 233445
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCC---CcchHHHHHHHHHhc
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETE---NVVLWNVMLVAYGQL 394 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~ 394 (968)
+..+...+...|++++|.+++..+.+.. +.+...+..+...|...|++++|.+.|+..... +...+..++..+.+.
T Consensus 366 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 444 (899)
T TIGR02917 366 LSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRS 444 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhc
Confidence 6666666677777777777777766653 334555666666777777777777777665432 234455566667777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh---------------------CChHHHHHHHh
Q 040643 395 NDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL---------------------GNLNTAQEILR 453 (968)
Q Consensus 395 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~---------------------~~~~~a~~~~~ 453 (968)
|++++|+.+++++... .+++..++..+...+...|+.+.+.+.+... |++++|.+.++
T Consensus 445 ~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 523 (899)
T TIGR02917 445 GQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFE 523 (899)
T ss_pred CCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777776553 2334455666666666666655555554432 45555555555
Q ss_pred hCC---CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCc
Q 040643 454 RLP---EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDL 530 (968)
Q Consensus 454 ~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 530 (968)
++. +.+..+++.+...+.+.|+.++|..+|+++.+.+ +.+...+..+...+...|+++.+.+++..+.+.. +.+.
T Consensus 524 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 601 (899)
T TIGR02917 524 KVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP 601 (899)
T ss_pred HHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence 443 2344556666666666666666666666665532 2233445555566666666666666666665433 2344
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh
Q 040643 531 SIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA 607 (968)
Q Consensus 531 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 607 (968)
..+..+...|.+.|++++|...|+++.+ .+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+...+.
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 5566666666666666666666665432 244456666666666666666666666665432 223445555556666
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
..|++++|..++..+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++..+...|+.++|++.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 759 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTL 759 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHH
Confidence 6666666666666665543 3345555566666666666666666666654 344455556666666666666666666
Q ss_pred HHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 040643 686 EKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP 763 (968)
Q Consensus 686 ~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p 763 (968)
+++.+ ..|+ ...+..+...|...|+.++|..+|+.+.+.. +++...+..+..++...|+ ++|.++++++ ...|
T Consensus 760 ~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~ 834 (899)
T TIGR02917 760 EAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP 834 (899)
T ss_pred HHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence 66665 2343 4455556666666666666666666664431 2235556666666666666 6666666655 3334
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 764 D-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 764 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+ ..+|..+...+...|+++.|...++++++++|.++..+..++.+|...|++++|.++.+.|
T Consensus 835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 4555555555666666666666666666666666666666666666666666666665555
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.1e-38 Score=395.68 Aligned_cols=803 Identities=13% Similarity=0.062 Sum_probs=626.3
Q ss_pred ChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCC--C-CccchHHHHHH
Q 040643 9 NSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSK--R-TVFSWNKLISG 85 (968)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~ 85 (968)
++..+-..-..+...|++..|...+.+.++..+. +...+..+...|.+.|++++|...|+.... | +...+..+...
T Consensus 21 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 99 (899)
T TIGR02917 21 SPESLIEAAKSYLQKNKYKAAIIQLKNALQKDPN-DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARA 99 (899)
T ss_pred CHHHHHHHHHHHHHcCChHhHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHH
Confidence 4444555556677789999999999998876433 456677888899999999999999988753 2 33455667788
Q ss_pred HHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCch
Q 040643 86 FVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFID 165 (968)
Q Consensus 86 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 165 (968)
+...|++++|+..+..............+..+-.++...|+.. .+...+..++.... .+...+..+...+...|+++
T Consensus 100 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~ 176 (899)
T TIGR02917 100 YLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLE--LAQKSYEQALAIDP-RSLYAKLGLAQLALAENRFD 176 (899)
T ss_pred HHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCC-CChhhHHHHHHHHHHCCCHH
Confidence 9999999999999976543333333445566667777888888 88888888876543 34567788888899999999
Q ss_pred HHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHH
Q 040643 166 SAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFK 242 (968)
Q Consensus 166 ~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 242 (968)
+|.++++.+ ..++...|..+...+...|++++|...|++..... +.+..++..+...+...|+++.|.+.+..+.+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 255 (899)
T TIGR02917 177 EARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALR-PNNPAVLLALATILIEAGEFEEAEKHADALLK 255 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999876 33455678888889999999999999999987753 34566777888888899999999999999888
Q ss_pred hcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHH
Q 040643 243 WGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRD---GVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVA 319 (968)
Q Consensus 243 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 319 (968)
.... +..........+...|++++|...|+++.+.+ ...+..+...+.+.|++++|...|.+..... +.+...+.
T Consensus 256 ~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 333 (899)
T TIGR02917 256 KAPN-SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARR 333 (899)
T ss_pred hCCC-CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHH
Confidence 6533 33344444455677899999999998876432 2344555667888999999999999987653 23345566
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCC
Q 040643 320 SLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLND 396 (968)
Q Consensus 320 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 396 (968)
.+...+...|+++.|.+.+..+.+.. +.+...++.+...|.+.|++++|.+.|+++.. .+...|..+...+...|+
T Consensus 334 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 412 (899)
T TIGR02917 334 LLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGD 412 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCC
Confidence 77778889999999999999988765 45677888999999999999999999988653 356678888999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh---------------------CChHHHHHHHhhC
Q 040643 397 LSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL---------------------GNLNTAQEILRRL 455 (968)
Q Consensus 397 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~---------------------~~~~~a~~~~~~~ 455 (968)
+++|++.|+++.+....+. .....++..+...|+.+.+..++... |+.++|...|++.
T Consensus 413 ~~~A~~~~~~a~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 491 (899)
T TIGR02917 413 PSEAIADLETAAQLDPELG-RADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA 491 (899)
T ss_pred hHHHHHHHHHHHhhCCcch-hhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999887653322 33444566677777777766655443 7777787777765
Q ss_pred C---CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchh
Q 040643 456 P---EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSI 532 (968)
Q Consensus 456 ~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 532 (968)
. +.+...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|+.+.+...+..+.+.+. .+...
T Consensus 492 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 569 (899)
T TIGR02917 492 LSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEP 569 (899)
T ss_pred HhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhH
Confidence 3 3455567777778888888888888888887653 33456667777777778888888888888776653 34566
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
+..++..|.+.|+.++|..+++.+.. .+...|..+...|.+.|++++|+..|+++.+.. ..+...+..+...+...
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 648 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM 648 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 67788888888888888888887753 356678888888999999999999998887653 22445566777778888
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
|+.++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.+. .++...|..+...+...|++++|++.|+
T Consensus 649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 727 (899)
T TIGR02917 649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR 727 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89999998888887753 4457788888888999999999999988876 3466788888889999999999999999
Q ss_pred HHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-C
Q 040643 687 KMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-D 764 (968)
Q Consensus 687 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~ 764 (968)
++.. ..|+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++++|.+.|+.++|.+.++++ ...| +
T Consensus 728 ~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 803 (899)
T TIGR02917 728 KALK--RAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDN 803 (899)
T ss_pred HHHh--hCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 9988 5677777888888999999999999999988664 2344778888999999999999999999987 3344 5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
+.++..+...+...|+ +.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+.+
T Consensus 804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 8888999999999999 789999999999999999999999999999999999999888776644
No 9
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=4.4e-42 Score=300.54 Aligned_cols=106 Identities=56% Similarity=0.987 Sum_probs=99.8
Q ss_pred cccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhh--------cccchhccHHHHH
Q 040643 835 GQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQK--------DPCVYIHSEKLAI 906 (968)
Q Consensus 835 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~--------~~~~~~hse~la~ 906 (968)
||||+++ |.|++||++||+. ++..++...||.|+++.++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999998 9999999999998 555677788999999999999988776 6799999999999
Q ss_pred HHHhhcCCCCCCEEEeccc-ccCChhhHHHHHHHHhhcceEEEecCCcccccC
Q 040643 907 AFGLLSLSDSMPILVIKNL-RVCNDCHNWIKFVSKISNRTIVVRDANRFHHFE 958 (968)
Q Consensus 907 ~~~~~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~ 958 (968)
|||||+| ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.94 E-value=8.6e-22 Score=248.24 Aligned_cols=451 Identities=11% Similarity=0.062 Sum_probs=320.9
Q ss_pred hHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 331 FRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIFKQM 407 (968)
Q Consensus 331 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m 407 (968)
...+...+....+....|+. ....+...+...|++++|...|++... .+...+..+...|.+.|++++|+..|++.
T Consensus 251 ~~~A~~~L~~~~~~~~dp~~-~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~A 329 (1157)
T PRK11447 251 VAAARSQLAEQQKQLADPAF-RARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKA 329 (1157)
T ss_pred HHHHHHHHHHHHHhccCcch-HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455555544443333332 223345667788999999999987653 36678889999999999999999999988
Q ss_pred HhcCCCCCc-cchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeH--HHHHHHHHhcCChhHHHHHHH
Q 040643 408 QTEGLTPNQ-YTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSW--TAMIVGFVQHGMFGEALELFE 484 (968)
Q Consensus 408 ~~~g~~p~~-~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~l~~ 484 (968)
.+....... ..+..++.. ...| ......+.+.|++++|+..|+
T Consensus 330 l~~~p~~~~~~~~~~ll~~----------------------------------~~~~~~~~~g~~~~~~g~~~eA~~~~~ 375 (1157)
T PRK11447 330 LALDPHSSNRDKWESLLKV----------------------------------NRYWLLIQQGDAALKANNLAQAERLYQ 375 (1157)
T ss_pred HHhCCCccchhHHHHHHHh----------------------------------hhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 765322111 111111110 0011 122345567777778888877
Q ss_pred HHHhcCCCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC---
Q 040643 485 EMENQGIQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD--- 560 (968)
Q Consensus 485 ~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d--- 560 (968)
+..+. .| +...+..+-..+...|+++.|.+.+..+++.... +...+..+...|. .++.++|...++.++...
T Consensus 376 ~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~ 451 (1157)
T PRK11447 376 QARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRS 451 (1157)
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHH
Confidence 77764 33 3344555666677777777787777777765433 3445556666664 457788888887765331
Q ss_pred ---------cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC
Q 040643 561 ---------NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE 630 (968)
Q Consensus 561 ---------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~ 630 (968)
...+..+...+...|++++|++.|++..+. .|+. ..+..+...+.+.|+.++|...++.+++.. +.+
T Consensus 452 ~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~ 528 (1157)
T PRK11447 452 IDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PND 528 (1157)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC
Confidence 123555677788899999999999998865 5654 445567778889999999999999988743 334
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCCCC----CHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMPEK----NEV---------SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----d~~---------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 697 (968)
......+...+.+.|+.++|...++.++.. +.. .+..+...+...|+.++|+++++. .+++.
T Consensus 529 ~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~ 603 (1157)
T PRK11447 529 PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPST 603 (1157)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCc
Confidence 555555666678899999999999988632 111 123456778899999999999872 23345
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSA 774 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~ 774 (968)
..+..+...+...|++++|+..|+...+. .|+ ...+..++.+|...|++++|++.++.. ...|+ ..++..+..+
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~ 680 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALA 680 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 56777888999999999999999988653 565 778888999999999999999999987 35565 6677777778
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcc------hHHHHHHHHhhcCCcchHHHH-HHHHHhCCCc
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSA------TYVLLSNIYAAAGKWDCRDQI-RQIMKDRGVK 831 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~-~~~m~~~g~~ 831 (968)
+...|+.+.|...++++++..|+++. .+..++.+|...|++++|... ++.|...|+.
T Consensus 681 ~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 681 WAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGIT 744 (1157)
T ss_pred HHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCC
Confidence 88999999999999999999876653 556679999999999999986 6666656553
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.93 E-value=9.6e-22 Score=247.79 Aligned_cols=601 Identities=11% Similarity=0.043 Sum_probs=387.5
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCCh
Q 040643 186 ISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNL 265 (968)
Q Consensus 186 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 265 (968)
++-+...++.+.|.+.+.++.... +-|+..+..+...+...|+.++|.+.+..+.+.... +........
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~--------- 103 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRT--------- 103 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHH---------
Confidence 345556777777777777766531 224455666666666777777777777777665521 111110000
Q ss_pred hHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 266 TSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCV-TVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 266 ~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
.+. ...++...+..+...+.+.|++++|++.|+++.... .|+.. ............++.++|...++.+++.
T Consensus 104 -----~~~-~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~ 176 (1157)
T PRK11447 104 -----TML-LSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD 176 (1157)
T ss_pred -----HHH-hcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh
Confidence 000 000111112223334445555555555555554321 11111 0000011112235555555555555554
Q ss_pred CCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCC-----------------------cchHHHHHHHHHhcCCHHHHH
Q 040643 345 GISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETEN-----------------------VVLWNVMLVAYGQLNDLSESF 401 (968)
Q Consensus 345 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-----------------------~~~~~~li~~~~~~g~~~~A~ 401 (968)
. +.+......+..++...|+.++|...|+++.... +..+...+..+-.....++|.
T Consensus 177 ~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 177 Y-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred C-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 3 2334445555555555555555555555543211 111122222222222334455
Q ss_pred HHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC---CCCceeHHHHHHHHHhcCChhH
Q 040643 402 QIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP---EDDVVSWTAMIVGFVQHGMFGE 478 (968)
Q Consensus 402 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 478 (968)
..+.++......|+.... .. + ..+...|++++|...|++.. +.+...+..+...|.+.|++++
T Consensus 256 ~~L~~~~~~~~dp~~~~~---~~----------G-~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~e 321 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRAR---AQ----------G-LAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRAR 321 (1157)
T ss_pred HHHHHHHHhccCcchHHH---HH----------H-HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 555444333222221110 00 1 22233477777777776654 3467788999999999999999
Q ss_pred HHHHHHHHHhcCCCC-ChhhHH------------HHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 479 ALELFEEMENQGIQS-DNIGFS------------SAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 479 A~~l~~~m~~~g~~p-d~~t~~------------~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
|+..|++..+..-.. +...+. ..-..+...|++++|.+.+..+++.... +...+..|...|...|+
T Consensus 322 A~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~ 400 (1157)
T PRK11447 322 AVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKD 400 (1157)
T ss_pred HHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCC
Confidence 999999988753221 111111 1123566789999999999999987643 55677788999999999
Q ss_pred HHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC--------CcchHHHHHHHHhhhhhHHH
Q 040643 546 IQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA--------NLYTFGSVVSAAANLANIKQ 614 (968)
Q Consensus 546 ~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--------~~~t~~~ll~a~~~~~~~~~ 614 (968)
+++|.+.|++.... +...+..+...|. .++.++|+.+++.+......+ ....+......+...|+.++
T Consensus 401 ~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e 479 (1157)
T PRK11447 401 YAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ 479 (1157)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence 99999999987643 4456777777774 467899999988765431110 01123445566778899999
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040643 615 GKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKH 691 (968)
Q Consensus 615 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 691 (968)
|.+.+..+++.. +.+..++..+...|.+.|++++|...|+++. .| +...+..+...+...|+.++|+..++++...
T Consensus 480 A~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~ 558 (1157)
T PRK11447 480 AAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRA 558 (1157)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCch
Confidence 999999998864 3456778889999999999999999999874 33 5666666666778899999999999886543
Q ss_pred CCCCChH---------HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 040643 692 DVMPNHV---------TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PI 761 (968)
Q Consensus 692 g~~Pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~ 761 (968)
...++.. .+..+..++...|+.++|..+++. .+++...+..+.+.+.+.|++++|.+.+++. ..
T Consensus 559 ~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~ 632 (1157)
T PRK11447 559 QWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR 632 (1157)
T ss_pred hcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2222221 234556778899999999999872 2445667788999999999999999999987 55
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 762 EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 762 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.|+ ...+..+...+...|+.+.|+..++++++..|+++..+..++++|...|++++|.++.+.+...
T Consensus 633 ~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 633 EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 665 7889999999999999999999999999999999999999999999999999999987776553
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=4.2e-20 Score=221.53 Aligned_cols=650 Identities=13% Similarity=0.055 Sum_probs=388.0
Q ss_pred CCcchHHHhhhccCC--C-CccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHH
Q 040643 59 GDLDSAMKIFDDMSK--R-TVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQI 135 (968)
Q Consensus 59 g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i 135 (968)
|++++|...|+...+ | +...+..+...|.+.|+.++|+..+++..+. .|+...|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~~~~L----------------- 118 (987)
T PRK09782 58 NDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARLERSL----------------- 118 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH-----------------
Confidence 666666666665532 2 2345566666666666666666666665543 23322222222
Q ss_pred HHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCC--CC-CeehHHHHHHH--------HHcCCCHHHHHHHHHH
Q 040643 136 HGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLC--FK-DSVSWVAMISG--------FSQNGYEREAILLFCQ 204 (968)
Q Consensus 136 ~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~--~~-~~~~~~~li~~--------~~~~g~~~~A~~~~~~ 204 (968)
+..++.+.|..+++++. .| +...+..+... |.+.+ +|.+.++
T Consensus 119 -----------------------a~i~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~e---qAl~AL~- 171 (987)
T PRK09782 119 -----------------------AAIPVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLP---VARAQLN- 171 (987)
T ss_pred -----------------------HHhccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHH---HHHHHHH-
Confidence 11155555555555551 12 12222222222 44443 3333333
Q ss_pred HHhcCCCCChhhHHHH-HHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhc-cCChhHHHHHHhhCCCCCccc
Q 040643 205 MHILGTVPTPYAISSA-LSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSR-SGNLTSAEQIFSKMQQRDGVT 282 (968)
Q Consensus 205 m~~~g~~p~~~t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~-~g~~~~A~~~f~~m~~~~~~~ 282 (968)
.......|++.+.... .+.+...++++.+..++..+.+.+.. +......|-.+|.. .++ +++..+++...+.|...
T Consensus 172 lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l 249 (987)
T PRK09782 172 DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQS 249 (987)
T ss_pred HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHH
Confidence 2222233334433333 56666666666666666666666522 23334455556666 355 77777766544457778
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHhhccccC-CCcccHHHHHHHHhccCChHH-HHHHHHHHHHhCCCCC-hhhHhHHHHH
Q 040643 283 YNSLISGLAQCGYSDKALELFEKMQLDCLK-PDCVTVASLVSACASVGAFRT-GEQLHSYAIKVGISKD-IIVEGSMLDL 359 (968)
Q Consensus 283 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~a~~~~~~~~~-a~~~~~~~~~~g~~~~-~~~~~~Li~~ 359 (968)
+.++...|.+.|+.++|.++++++...-.. |+..++.-++.-. +.... +..-+ .+ .+.++ ....-.+++.
T Consensus 250 ~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~---~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~ 322 (987)
T PRK09782 250 RITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKY---SANPVQALANY---TV-QFADNRQYVVGATLPV 322 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhc---cCchhhhccch---hh-hhHHHHHHHHHHHHHH
Confidence 888888888888888888888887654333 5555555444332 22211 11000 01 11111 2334455888
Q ss_pred HHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHH
Q 040643 360 YVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIH 439 (968)
Q Consensus 360 y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~ 439 (968)
+.+.++++.|.++.+ ....+.. .-.-..+....+...++...+..|.+.. |
T Consensus 323 ~~~~~~~~~~~~~~~-~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~y~~~--~------------------------- 373 (987)
T PRK09782 323 LLKEGQYDAAQKLLA-TLPANEM-LEERYAVSVATRNKAEALRLARLLYQQE--P------------------------- 373 (987)
T ss_pred HHhccHHHHHHHHhc-CCCcchH-HHHHHhhccccCchhHHHHHHHHHHhcC--C-------------------------
Confidence 999999998887744 3322321 1111112223355555655555554331 0
Q ss_pred HhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCCChhhHHHHHHHhhcccchhhhhhh
Q 040643 440 TQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQ-G-IQSDNIGFSSAISACAGIQALNQGRQI 517 (968)
Q Consensus 440 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~~pd~~t~~~ll~a~~~~~~~~~a~~i 517 (968)
.+....--+--...+.|+.++|..+|+..... + ..++......++..+...+.+.....+
T Consensus 374 ------------------~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 374 ------------------ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred ------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 01111111222235677888888888877652 1 223333333566666665553333322
Q ss_pred hHhhhhhcCCCCchhhhhHHHHH-HHcCCHHHHHHHHHhCCCC-CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 518 HAQSYISGFSDDLSIGNALISLY-ARCGRIQEAYLVFNKIDAK-DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 518 ~~~~~~~g~~~~~~~~~~Li~~y-~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
..... +++...-..+..-+ ...+..+.+...+..++.. +...|..+..++.. ++.++|+..|.+.... .|+
T Consensus 436 ~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 436 AILSK----PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred HHhcc----ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 22111 11111001111100 0111122222222222221 55677777777776 7888888877776654 466
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH---HHHHHHHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNE---VSWNAMITGF 672 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~---~~~~~li~~~ 672 (968)
......+..++...|+.++|...+..+... +|+...+..+...+.+.|++++|.+.|+...+.++ ..+..+....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 554444444556788889888888876553 34444456667788889999999999987763322 2222233334
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e 751 (968)
...|++++|+..|++.++ +.|+...+..+..++.+.|++++|...|+.... +.|+ ...+..+..+|...|++++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~---l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE---LEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHH
Confidence 455999999999999998 788877888899999999999999999998754 4676 6778888889999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 752 AREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 752 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
|.+.+++. ...|+ +.+|..+..++...|+++.|+..++++++++|+++......+++.....+++.|.+-.+.
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999887 56665 788889999999999999999999999999999999999999999999999999885443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.4e-19 Score=217.06 Aligned_cols=334 Identities=9% Similarity=-0.009 Sum_probs=222.0
Q ss_pred CChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhh-c-CCCCchhhhhHHHHHHHcCCHHHHHH
Q 040643 474 GMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYIS-G-FSDDLSIGNALISLYARCGRIQEAYL 551 (968)
Q Consensus 474 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~k~g~~~~A~~ 551 (968)
+...++...++.|.+.. +-+....--+---....|+.++|.+++...... + -..+..+.+-|+..|.+.+.+....+
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 434 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAK 434 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHH
Confidence 44555555555554431 112111212222233455566666666655542 1 11233344456666666666333333
Q ss_pred H---HHhCCCCCcccHHHHHHHHHhcCChhhH---HHHHHHhhhcCCcCC--cchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 552 V---FNKIDAKDNISWNGLISGFAQSGYCEGA---LQVFSQMTQVGVQAN--LYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 552 ~---f~~m~~~d~~~~~~li~~~~~~g~~~~A---~~l~~~m~~~g~~p~--~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+ -..+..+.... -.|+..++ ...+.... +..|+ .......+..|...+..++|...+....
T Consensus 435 ~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al 503 (987)
T PRK09782 435 VAILSKPLPLAEQRQ---------WQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAE 503 (987)
T ss_pred HHHhccccccchhHH---------HHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 2 22232222211 12222222 22232322 22344 3332233333444478888998777776
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HH
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TF 700 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~ 700 (968)
... |+......+...+...|++++|...|+++. .|+...|..+...+.+.|+.++|+..|++.++ ..|+.. .+
T Consensus 504 ~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~--l~P~~~~l~ 579 (987)
T PRK09782 504 QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQ--RGLGDNALY 579 (987)
T ss_pred HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCccHHHH
Confidence 643 454444444555678999999999999766 35556788888889999999999999999998 456654 34
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH 778 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 778 (968)
..+.......|++++|...|+... .+.|+...|..+..++.+.|+.++|.+.+++. ...|+ ...+..+..++...
T Consensus 580 ~~La~~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 580 WWLHAQRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDS 656 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 445556667899999999999875 45788889999999999999999999999987 67787 66777777789999
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|+.+.|...++++++++|+++..+..++++|...|+.++|....+..-
T Consensus 657 G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 657 GDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998755543
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.85 E-value=2.2e-18 Score=181.93 Aligned_cols=382 Identities=13% Similarity=0.140 Sum_probs=314.2
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCc
Q 040643 381 VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDV 460 (968)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 460 (968)
..+|..+...+-..|++++|+.+++.|.+.. +..+
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~---------------------------------------------p~fi 150 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELK---------------------------------------------PKFI 150 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcC---------------------------------------------chhh
Confidence 4567778888888888888888888877532 2244
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh-hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH
Q 040643 461 VSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC-AGIQALNQGRQIHAQSYISGFSDDLSIGNALISL 539 (968)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~-~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 539 (968)
..|..+..++...|+.+.|.+.|.+.++ +.|+.+...+-+.-. ...|.+.+++..+-.+++.... =..+|+.|...
T Consensus 151 da~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~ 227 (966)
T KOG4626|consen 151 DAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCV 227 (966)
T ss_pred HHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchH
Confidence 5677788888888888888888888776 567665554433322 3356777777777776665432 24568889999
Q ss_pred HHHcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHH
Q 040643 540 YARCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 540 y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a 615 (968)
+-..|++..|...|++...-| ...|-.|...|...+.+++|+..+.+.... .|+. +.+..+...|-..|.++.|
T Consensus 228 f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlA 305 (966)
T KOG4626|consen 228 FNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLA 305 (966)
T ss_pred HhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHH
Confidence 999999999999999877544 347888999999999999999998887654 6764 5566666667889999999
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHD 692 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 692 (968)
...++..++.. +.-...|+.|..++-..|++.+|.+.+++.. .| -..+.+.|...|...|..++|..+|....+
T Consensus 306 I~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~-- 382 (966)
T KOG4626|consen 306 IDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE-- 382 (966)
T ss_pred HHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--
Confidence 99999988843 2236688999999999999999999999876 34 456889999999999999999999999999
Q ss_pred CCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHH
Q 040643 693 VMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVW 768 (968)
Q Consensus 693 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~ 768 (968)
+.|. ...++.|.+.+-+.|.+++|+..+++.. .|.|+ .+.|+.|...|-..|+.+.|.+.+.+. .+.|. +...
T Consensus 383 v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 383 VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 8998 5689999999999999999999999664 78999 889999999999999999999999887 78888 7888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchH
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 818 (968)
+.|.+.++..||+++|+...+.+++++|+.+.+|-.|.....---.|.+-
T Consensus 460 sNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 460 SNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY 509 (966)
T ss_pred hhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999998888888888874
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.79 E-value=2.9e-16 Score=166.06 Aligned_cols=356 Identities=15% Similarity=0.185 Sum_probs=298.9
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHH
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALIS 538 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 538 (968)
..+|..+.+.+-..|++++|+.+++.|++. +| ....|..+-.++...|+.+.+.+.+...++.++. ...+.+.+..
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgn 192 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGN 192 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhH
Confidence 347888999999999999999999999984 56 4567888888999999999999999998876542 2334455667
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQ 614 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 614 (968)
.....|++++|...+.+..+. =.+.|+.|...+-.+|+..+|+..|.+.... .|+- -.|..+-..+...+..+.
T Consensus 193 Llka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 193 LLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred HHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchH
Confidence 777889999999888765533 3578999999999999999999999998754 5653 345555556666666666
Q ss_pred HHHHHHHHHHhCCCC-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 615 GKQVHAMIIKTGYDS-ETEASNSLITLYAKCGSIDDAKREFLEMP--EKN-EVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 615 a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
|...+..+.. ..| ...++..|...|-..|.++-|+..+++.. +|+ ...||.|..++-..|+..+|...|.+.+.
T Consensus 271 Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 6666655544 344 46677788889999999999999999877 453 67999999999999999999999999999
Q ss_pred CCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HH
Q 040643 691 HDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AM 766 (968)
Q Consensus 691 ~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~ 766 (968)
+.|+. -..+.|...+...|.+++|..+|... +.+.|. ....+.+..+|-..|++++|..-+++. .++|+ +.
T Consensus 349 --l~p~hadam~NLgni~~E~~~~e~A~~ly~~a---l~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd 423 (966)
T KOG4626|consen 349 --LCPNHADAMNNLGNIYREQGKIEEATRLYLKA---LEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD 423 (966)
T ss_pred --hCCccHHHHHHHHHHHHHhccchHHHHHHHHH---HhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH
Confidence 88985 47999999999999999999999966 466788 777899999999999999999999987 89999 78
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH-HHHHHh
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI-RQIMKD 827 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~-~~~m~~ 827 (968)
.++.+-+.+...|+++.|.....+++..+|.-+.++..|+.+|-.+|+..+|..- +..+|-
T Consensus 424 a~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 424 ALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 8999999999999999999999999999999999999999999999999999885 555543
No 16
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.78 E-value=3.2e-17 Score=184.47 Aligned_cols=244 Identities=11% Similarity=0.069 Sum_probs=161.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCC----chhhhhHHH
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDD----LSIGNALIS 538 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~----~~~~~~Li~ 538 (968)
+..+...|.+.|++++|+.+|+++.+. -+++..++..+...+...|+++.|.+.+..+.+.+..+. ...+..+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 444455555555555555555555443 122334444455555555555555555555544432221 113445677
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
.|.+.|+.++|.+.|+++.+. +...+..+...|.+.|++++|+++|+++...+......++..+..++...|+.++|
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A 268 (389)
T PRK11788 189 QALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG 268 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence 788888888888888876532 34567778888888899999999988887653222234566777788888888888
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQ---HGYALEAINLFEKMKK 690 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~---~g~~~~A~~l~~~m~~ 690 (968)
...+..+.+.. |+...+..++..|.+.|++++|.++|+++. .|+..+++.++..+.. +|+..+++.+|++|.+
T Consensus 269 ~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 269 LEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 88888777653 455556778888888888888888887665 5777788877776654 5578888888888888
Q ss_pred CCCCCChHHHHHHHHHHcccCcHHH
Q 040643 691 HDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 691 ~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
.+++||+. .+|+|.|.+-+
T Consensus 347 ~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 347 EQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred HHHhCCCC------EECCCCCCCCc
Confidence 77777765 45777776644
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=1.6e-15 Score=179.82 Aligned_cols=248 Identities=13% Similarity=0.120 Sum_probs=193.8
Q ss_pred cCChhhHHHHHHHhhhcC-CcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVG-VQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g-~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 651 (968)
.+++++|++.|++....+ ..|+. ..+..+-..+...|++++|...+..+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 367888888888887654 33433 345555556667888888888888887743 223557778888889999999999
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
..|+++. ..+...|..+...|...|++++|+..|++.++ +.|+. ..+..+..++...|++++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 9998765 34678899999999999999999999999998 67864 46777788889999999999999987653
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-------HHHH-HHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-------AMVW-RTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-------~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
.|+ ...|..+..++...|++++|.+.+++. .+.|+ ...| +..+..+...|+++.|+...+++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 455 678888999999999999999999885 44443 1111 22222234469999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+...+..|+.+|...|++++|.+..+...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999997665543
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=7.2e-17 Score=181.58 Aligned_cols=292 Identities=13% Similarity=0.087 Sum_probs=210.9
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC---cchHHHHHHHHhhhhhH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN---LYTFGSVVSAAANLANI 612 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~a~~~~~~~ 612 (968)
.+...|++++|...|+++.+. +..+|..+...|.+.|++++|+.+++.+...+..++ ..++..+...+...|+.
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445666777777777766533 334566667777777777777777777765432221 13455556666777777
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHH
Q 040643 613 KQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KN------EVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 613 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d------~~~~~~li~~~~~~g~~~~A~~l 684 (968)
+.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+ |+ ...|..+...+...|+.++|++.
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 77777777766542 34566777788888888888888888887652 21 12456677778888999999999
Q ss_pred HHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 685 FEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 685 ~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
|+++.+ ..|+. .++..+...+.+.|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|.+.++++ .
T Consensus 203 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 203 LKKALA--ADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred HHHHHh--HCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 998887 45664 46777778888889999999999888643 343 456778888899999999999998887 5
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh--cCCcchHHHHHHHHHhCCCccCCcc
Q 040643 761 IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA--AGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 761 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..|+...+..+...+...|+.+.|...++++++..|++.....++...+.. .|+.+++..+.+.|.+++++..|.+
T Consensus 278 ~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 278 EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 677766667777888899999999999999999999887554444433322 5699999999999999999888873
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.4e-14 Score=156.47 Aligned_cols=548 Identities=12% Similarity=0.087 Sum_probs=322.2
Q ss_pred chHHHHHHhhCC--CCCeehHHHHHHH--HHcCCCHHHHHHHHHHHHhc--CCCCChhhHHHHHHhhcccCchHHHHHHH
Q 040643 164 IDSAKKVFNNLC--FKDSVSWVAMISG--FSQNGYEREAILLFCQMHIL--GTVPTPYAISSALSACTKIELFEIGEQFH 237 (968)
Q Consensus 164 ~~~A~~~f~~~~--~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 237 (968)
++.|.+.|.... .|+-+. ..+..+ ....|++..|+.+|...... ..+||+..- +-..+.+.++.+.|+..|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil-~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNIL-ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchH-HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 578888887762 232221 112222 33467889999999886543 345554321 123445778888888888
Q ss_pred HHHHHhcCCCchhHHHHHHHHh---hcc---CChhHHHHHHhhCC---CCCcccHHHHHHHHHcCCChhHHHHHHHHhhc
Q 040643 238 GLIFKWGFSSETFVCNALVTLY---SRS---GNLTSAEQIFSKMQ---QRDGVTYNSLISGLAQCGYSDKALELFEKMQL 308 (968)
Q Consensus 238 ~~~~~~g~~~~~~~~~~Li~~y---~~~---g~~~~A~~~f~~m~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (968)
..+.+.. | ...++++..+ ... ..+..+..++...- ..|++..|.|.+-|...|+++.+..+...+..
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8877654 2 3333333221 112 23444555554432 34788888899999999999999999888765
Q ss_pred cccC--CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC--C-Ccch
Q 040643 309 DCLK--PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET--E-NVVL 383 (968)
Q Consensus 309 ~g~~--p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~-~~~~ 383 (968)
.... .-...|-.+-+++-..|+++.|...|....+..-..-+.-+--|..+|.+.|+++.|...|+.+.. | +..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 4311 112346677888888999999999988877664333344456788999999999999999998764 3 3455
Q ss_pred HHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhh-CCCC
Q 040643 384 WNVMLVAYGQLND----LSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRR-LPED 458 (968)
Q Consensus 384 ~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~ 458 (968)
-..+...|+..+. .+.|..++.+..+.- +.|...|..+-..+-. ...+..++-+..|..++.. +.+.
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-------~d~~~sL~~~~~A~d~L~~~~~~i 450 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-------TDPWASLDAYGNALDILESKGKQI 450 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-------cChHHHHHHHHHHHHHHHHcCCCC
Confidence 5556666666653 344444444433321 1222233332222222 2222223445556644433 3446
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCCCh-----hhHHHHHH-HhhcccchhhhhhhhHhhhhhcCCCC
Q 040643 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQ---GIQSDN-----IGFSSAIS-ACAGIQALNQGRQIHAQSYISGFSDD 529 (968)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~ 529 (968)
.+...|.+...+...|.+++|...|...... -..+|. .|...-+. ..-..++.+.|.+++..+++..+
T Consensus 451 p~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp--- 527 (1018)
T KOG2002|consen 451 PPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP--- 527 (1018)
T ss_pred CHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc---
Confidence 6778899999999999999999999998765 233444 22222233 33445678888888888887643
Q ss_pred chhhhhHHHHHHHc-------CCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhc-CCcCCcch
Q 040643 530 LSIGNALISLYARC-------GRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQV-GVQANLYT 598 (968)
Q Consensus 530 ~~~~~~Li~~y~k~-------g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t 598 (968)
..|++|.+. +...+|...+.... ..|+..|+-+...|.....+..|.+-|....+. ...+|..+
T Consensus 528 -----~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ys 602 (1018)
T KOG2002|consen 528 -----GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYS 602 (1018)
T ss_pred -----hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhH
Confidence 245555555 45567777776554 346667777777888888887777766665443 22356555
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQH 675 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~ 675 (968)
..+|-+.|.+. +.. +.... -...+..++|.+.|.++. .+|...=|-+.-.++..
T Consensus 603 liaLGN~~~~~------------l~~---~~rn~--------ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 603 LIALGNVYIQA------------LHN---PSRNP--------EKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEK 659 (1018)
T ss_pred HHHhhHHHHHH------------hcc---cccCh--------HHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhc
Confidence 55554433221 000 00000 112234555555555444 23444555555556666
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
|++.+|..+|.+.++... -+.-+|..+...|...|.+-.|++.|+...+.+.-.-+.+...||..++.++|.+.+|.+.
T Consensus 660 g~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred cCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHH
Confidence 666666666666655432 2233455666666666666666666666555555555566666666666666666666654
Q ss_pred HHh
Q 040643 756 TEQ 758 (968)
Q Consensus 756 ~~~ 758 (968)
...
T Consensus 739 ll~ 741 (1018)
T KOG2002|consen 739 LLK 741 (1018)
T ss_pred HHH
Confidence 433
No 20
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.74 E-value=1.9e-14 Score=158.80 Aligned_cols=697 Identities=11% Similarity=0.033 Sum_probs=393.0
Q ss_pred HHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCC
Q 040643 96 LGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLC 175 (968)
Q Consensus 96 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 175 (968)
.+++-.|...|+.|+.+||.++|-.||..|++. .+. |+..|.-..++....+++.++.+....++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdie--aat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIE--AAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCc--ccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------
Confidence 356778888999999999999999999999998 676 9999988888888899999999999999887776
Q ss_pred CCCeehHHHHHHHHHcCCCHHHHHHHHHH-HH-------hcCCCCChhhHHHHHHhhcccC-c------hHHHHHHHHHH
Q 040643 176 FKDSVSWVAMISGFSQNGYEREAILLFCQ-MH-------ILGTVPTPYAISSALSACTKIE-L------FEIGEQFHGLI 240 (968)
Q Consensus 176 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~t~~~ll~~~~~~~-~------~~~a~~~~~~~ 240 (968)
.|-..+|+.|..+|.++|+... ++.-++ |. ..|+.--..-|...++.|...- + ..--+.+++..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5667799999999999998765 333333 22 1233222233333333332211 1 11123344444
Q ss_pred HHhcCCCchhHHHHHHHHhhcc-----CChhHHHHHHhhCC-CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCC
Q 040643 241 FKWGFSSETFVCNALVTLYSRS-----GNLTSAEQIFSKMQ-QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPD 314 (968)
Q Consensus 241 ~~~g~~~~~~~~~~Li~~y~~~-----g~~~~A~~~f~~m~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 314 (968)
++.+....+..++.=...+.+. ..+++-...-.... .++..++.+++.+-..+|+.+.|..++.+|.+.|+..+
T Consensus 159 lkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 159 LKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 4444211111111111111221 12222222222223 37888999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhc
Q 040643 315 CVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQL 394 (968)
Q Consensus 315 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 394 (968)
.+-|..++-+ .++......+..-|.+.|+.|+..++...+--..+.|....+....+.-..-....+..+..+..-+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~ 315 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLAN 315 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhH
Confidence 9888888765 7888888899999999999999988887776666655533322211110000111223333321111
Q ss_pred CCH-----HHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh--------C-C----hHHHHHHHhhCC
Q 040643 395 NDL-----SESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL--------G-N----LNTAQEILRRLP 456 (968)
Q Consensus 395 g~~-----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~--------~-~----~~~a~~~~~~~~ 456 (968)
.+. .-....+.+..-.|+......|....+ ....|.-+...++-..+ + + -..+.+.|.+..
T Consensus 316 k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e 394 (1088)
T KOG4318|consen 316 KRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIE 394 (1088)
T ss_pred HHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHH
Confidence 111 111222222222233322222222111 22233333333333333 1 0 112334444443
Q ss_pred CCCce-eHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCh----------------------------hhHHHHHHH
Q 040643 457 EDDVV-SWTAMIVGFVQ---HGMFGEALELFEEMENQGIQSDN----------------------------IGFSSAISA 504 (968)
Q Consensus 457 ~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~----------------------------~t~~~ll~a 504 (968)
.+... .++ .-.+... .....+..++.... .||. ..-..++..
T Consensus 395 ~~~~~~i~~-~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~ 468 (1088)
T KOG4318|consen 395 RHICSRIYY-AGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLT 468 (1088)
T ss_pred hhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHH
Confidence 33211 111 1111111 11222222222222 1221 112233334
Q ss_pred hhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC------cccHHHHHHHHHhcCChh
Q 040643 505 CAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD------NISWNGLISGFAQSGYCE 578 (968)
Q Consensus 505 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d------~~~~~~li~~~~~~g~~~ 578 (968)
|.+..+...+.+.-+.....-+ ...|..|++......+.++|..+.++...+| ..-+..+.....+.+...
T Consensus 469 l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~ 545 (1088)
T KOG4318|consen 469 LNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILY 545 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHH
Confidence 4443333333322222111111 1567889999999999999999999988774 345788888999999999
Q ss_pred hHHHHHHHhhhcCC-cCC-cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhc
Q 040643 579 GALQVFSQMTQVGV-QAN-LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLE 656 (968)
Q Consensus 579 ~A~~l~~~m~~~g~-~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 656 (968)
.+..++.+|.+.-. .|+ ..++-.+++.-+..|..+.-+++++.+...|+..+ .-|+....+.++...|.++++.
T Consensus 546 dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et----gPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 546 DLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET----GPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred HHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc----ccceEEEeeccchhhhhhcchH
Confidence 99999999987422 222 34555677778888999999999999988887553 3345556677888888888775
Q ss_pred CC---CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HCC--CCCChHHH-HHHH-----HHHcccCcHHHHHHH
Q 040643 657 MP---EK---NEVSWNAMITGFSQHGYALEAINLFEKMK---KHD--VMPNHVTF-VGVL-----SACSHVGLVNEGLRY 719 (968)
Q Consensus 657 ~~---~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~---~~g--~~Pd~~t~-~~ll-----~a~~~~g~~~~a~~~ 719 (968)
.. ++ +...|..++.-- ...+.+++..+-.... +.| ..|-.++= -++. .-|...|.+.--...
T Consensus 622 ~~qkyk~~P~~~e~lcrlv~ke-~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll 700 (1088)
T KOG4318|consen 622 EEQKYKPYPKDLEGLCRLVYKE-TTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELL 700 (1088)
T ss_pred HHHHhcCChHHHHHHHHHHHhh-ccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCccccHHHH
Confidence 54 22 223333332210 0112222222211111 111 00000000 0000 011112222111122
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccCC
Q 040643 720 FESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK---NMEIGEYAANHLLELEP 796 (968)
Q Consensus 720 ~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~p 796 (968)
.+.+.+ ..+..-+...|-+.|+++.|..+++++++-|+......|+.-.+.+. |+..+...-+++-++.|
T Consensus 701 ~elt~~-------lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~ 773 (1088)
T KOG4318|consen 701 LELTHE-------LGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRT 773 (1088)
T ss_pred HHHHhH-------hHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccc
Confidence 222211 12233477789999999999999999999999998888888888766 67788888888888877
Q ss_pred CCcch--HHHHHHHHhhcCCcc-hHHHHHHHHHhC
Q 040643 797 EDSAT--YVLLSNIYAAAGKWD-CRDQIRQIMKDR 828 (968)
Q Consensus 797 ~~~~~--~~~l~~~y~~~g~~~-~a~~~~~~m~~~ 828 (968)
..+.+ |+.=--..+.+++.. .|.+.....+++
T Consensus 774 ~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq 808 (1088)
T KOG4318|consen 774 LFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQ 808 (1088)
T ss_pred ccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHc
Confidence 65432 222212344555555 455566666665
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.74 E-value=3.7e-15 Score=179.81 Aligned_cols=182 Identities=10% Similarity=0.059 Sum_probs=131.7
Q ss_pred HhcCCHHHHHHHHhcCCCC-----C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHccc
Q 040643 642 AKCGSIDDAKREFLEMPEK-----N-EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-----VTFVGVLSACSHV 710 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~~~-----d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-----~t~~~ll~a~~~~ 710 (968)
...|+.++|++.|+.+... + ...| +...|...|++++|+..|+++.+. .|.. .....+..++...
T Consensus 248 l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 248 LARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhc
Confidence 3457777777777776632 1 1122 455677777777777777777652 3322 2345555667777
Q ss_pred CcHHHHHHHHHHhhhhcC----------CCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYG----------LVPK---PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSAC 775 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~----------i~p~---~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~ 775 (968)
|.+++|..+++.+..... -.|+ ...+..++.++...|++++|++.++++ ...|+ ...|..+...+
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 888888877777754310 0122 223456778888999999999999987 44554 77888888889
Q ss_pred HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 776 RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...|+.+.|+...+++++++|++...++.++.++...|+|++|..+.+.+.+
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999988766654
No 22
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.1e-12 Score=147.34 Aligned_cols=554 Identities=15% Similarity=0.086 Sum_probs=349.1
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHhhc--ccCchHHHHHHHHHHHHhc--CCCchhHHHHHHHHhhccCChhHHHH
Q 040643 195 EREAILLFCQMHILGTVPTPYAISSALSACT--KIELFEIGEQFHGLIFKWG--FSSETFVCNALVTLYSRSGNLTSAEQ 270 (968)
Q Consensus 195 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~ 270 (968)
.+.|...|....+.. ++| ....+.+||. ..+++..+..++..++... ..+|+.+... ..+.++|+.+.|..
T Consensus 146 ~~~A~a~F~~Vl~~s-p~N--il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~~ 220 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDN--ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKALL 220 (1018)
T ss_pred HHHHHHHHHHHHhhC-Ccc--hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHHH
Confidence 588888888877642 233 3444556655 4578999999999866653 4667655433 56678899999999
Q ss_pred HHhhCCCCCcccHHHHHHHHH---c---CCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 271 IFSKMQQRDGVTYNSLISGLA---Q---CGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 271 ~f~~m~~~~~~~~~~li~~~~---~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
.|.+..+-|...-++++.-.. . ...+..++.++...-... .-|+...+.|-+-+...|++..+..+...++..
T Consensus 221 a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 221 AFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 998887766655555443211 1 122334444443332211 234455566666666677777777776666655
Q ss_pred CCCCC--hhhHhHHHHHHHhcCChhHHHHHHhhCCCC---C-cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 040643 345 GISKD--IIVEGSMLDLYVKCSDVETAYKFFLTTETE---N-VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYT 418 (968)
Q Consensus 345 g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 418 (968)
..... ...+--+..+|-..|+++.|...|-+.... + +..+--+...|.+.|+++.+...|+...+. .||.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~-- 375 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNN-- 375 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccch--
Confidence 42111 123445566666667777776666554321 1 233444556666666666666666665543 2222
Q ss_pred hhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcC----ChhHHHHHHHHHHhcCCCCC
Q 040643 419 YPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHG----MFGEALELFEEMENQGIQSD 494 (968)
Q Consensus 419 ~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~pd 494 (968)
..+...|...|...+ ..+.|..++.+..+.- +-|
T Consensus 376 -----------------------------------------~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d 413 (1018)
T KOG2002|consen 376 -----------------------------------------YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVD 413 (1018)
T ss_pred -----------------------------------------HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-ccc
Confidence 222233333333332 2234444444433321 223
Q ss_pred hhhHHHHHHHhhcccchhhhhhhh----HhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC-------Ccc-
Q 040643 495 NIGFSSAISACAGIQALNQGRQIH----AQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK-------DNI- 562 (968)
Q Consensus 495 ~~t~~~ll~a~~~~~~~~~a~~i~----~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-------d~~- 562 (968)
...|..+-..+.....+. ....+ ..+...+-.+.+.+.|.+...+...|++++|...|++...+ |.-
T Consensus 414 ~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 333333333332222111 12222 23344555577888899999999999999999999865432 221
Q ss_pred -----cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh-hhhhHHHHHHHHHHHHHhCCCCChhHHhH
Q 040643 563 -----SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA-NLANIKQGKQVHAMIIKTGYDSETEASNS 636 (968)
Q Consensus 563 -----~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 636 (968)
+--.+...+-..++++.|.+.++...+. .|+-++-..=+.+.+ ..+.+.++...+..+.... ..++.+++-
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 1122444555667899999999998876 454433222221122 2345667777776666532 456667777
Q ss_pred HhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCC-ChH
Q 040643 637 LITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQ------------HGYALEAINLFEKMKKHDVMP-NHV 698 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~------------~g~~~~A~~l~~~m~~~g~~P-d~~ 698 (968)
+.+.|.+...+.-|.+-|+.+. .+|..+.-+|.+.|.+ .+..++|+++|.+.++ ..| |..
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~y 647 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMY 647 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhh
Confidence 8888988888888888665543 3466666566654442 2457889999999998 566 566
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--C--CCCCHHHHHHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--P--IEPDAMVWRTLLSA 774 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~--~~p~~~~~~~ll~~ 774 (968)
.=+++.-.+++.|.+.+|..+|.+.++... -....|-.+..+|...|++-.|.++++.. . -+.+..+..-|..+
T Consensus 648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~--~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara 725 (1018)
T KOG2002|consen 648 AANGIGIVLAEKGRFSEARDIFSQVREATS--DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARA 725 (1018)
T ss_pred hccchhhhhhhccCchHHHHHHHHHHHHHh--hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 788888899999999999999999977532 34566888999999999999999999875 2 23458888889999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
....|.+..+..++.++..+.|.|+..-..++-+
T Consensus 726 ~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v 759 (1018)
T KOG2002|consen 726 WYEAGKLQEAKEALLKARHLAPSNTSVKFNLALV 759 (1018)
T ss_pred HHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHH
Confidence 9999999999999999999999999876666544
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.70 E-value=6.6e-14 Score=166.07 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=202.8
Q ss_pred cCCHHHHHHHHHhCCCC------CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHH
Q 040643 543 CGRIQEAYLVFNKIDAK------DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a 615 (968)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+. .++..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 35677777777765432 3446777777888888888888888887654 4553 3566666677788888888
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHD 692 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 692 (968)
...+..+++.. +.+..++..+...|...|++++|...|++.. .| +...|..+...+.+.|+.++|+..|++.++
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-- 461 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK-- 461 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence 88888887753 4457788889999999999999999999876 33 567888899999999999999999999988
Q ss_pred CCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc--chH------HHHHHHHhhcCChHHHHHHHHhC-CCC
Q 040643 693 VMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP--EHY------ACVVDLLGRAGCLSRAREFTEQM-PIE 762 (968)
Q Consensus 693 ~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y------~~lv~~l~r~G~~~eA~~~~~~m-~~~ 762 (968)
..|+ ...+..+..++...|++++|.+.|+.... +.|+. .++ ......+...|++++|.+++++. .+.
T Consensus 462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 6776 56788888899999999999999998653 34431 111 11222344579999999999985 667
Q ss_pred CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 763 PD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 763 p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|+ ...|..+...+...|+++.|...+++++++.+.....+ .+..|.++.+++...++
T Consensus 539 p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 539 PECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 76 55788888889999999999999999999988654422 22345567777665554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.70 E-value=2e-14 Score=169.64 Aligned_cols=328 Identities=8% Similarity=-0.007 Sum_probs=261.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
...++..+.+.|++++|+.+++........+.. .+..+..++...|+++.|.+.+..+++..+. +...+..+...|..
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~ 122 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLK 122 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHH
Confidence 445677888899999999999998876433333 3344445666789999999999999887654 45677888999999
Q ss_pred cCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~ 619 (968)
.|+.++|...|++... .+...|..+...+.+.|++++|...++.+.... |+.......+..+...|++++|...+
T Consensus 123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~--P~~~~a~~~~~~l~~~g~~~eA~~~~ 200 (656)
T PRK15174 123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV--PPRGDMIATCLSFLNKSRLPEDHDLA 200 (656)
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999988754 356688899999999999999999999887653 44333332334577889999999999
Q ss_pred HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCC
Q 040643 620 AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALE----AINLFEKMKKHD 692 (968)
Q Consensus 620 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g 692 (968)
..+++....++......+...+.+.|+.++|.+.|+++. ..+...+..+...|...|+.++ |+..|++..+
T Consensus 201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~-- 278 (656)
T PRK15174 201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ-- 278 (656)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--
Confidence 888775433344455556778889999999999999876 3467788999999999999886 8999999998
Q ss_pred CCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHH
Q 040643 693 VMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWR 769 (968)
Q Consensus 693 ~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~ 769 (968)
+.|+. ..+..+...+...|++++|..+++.... +.|+ ...+..+..+|.+.|++++|.+.++++ ...|+...|.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 77874 4788888999999999999999998865 3566 556777889999999999999999987 4677754544
Q ss_pred H-HHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 770 T-LLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 770 ~-ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
. +..++...|+.+.|...++++++.+|++.
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 4 44568899999999999999999999875
No 25
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=4.8e-14 Score=143.36 Aligned_cols=341 Identities=14% Similarity=0.159 Sum_probs=248.8
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhc--ccCchHHH-HHHHHHHHHhcCCCchhHHHHHH
Q 040643 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACT--KIELFEIG-EQFHGLIFKWGFSSETFVCNALV 256 (968)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~Li 256 (968)
++=|.|+. ...+|...++.-+|++|+..|+..++..-..+++.-+ .....--+ ++.|-.|.+.|-. +..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc----
Confidence 34555554 4467899999999999999999888776666655422 22222222 2333334444422 22222
Q ss_pred HHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHH
Q 040643 257 TLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQ 336 (968)
Q Consensus 257 ~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 336 (968)
|.|.+.+ ++-+...+...++..||.|+|+-...+.|.+++.+-.....+.+..+|+.+|.+.+- ..++.
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHH
Confidence 3455444 444444466779999999999999999999999999998899999999999987653 34589
Q ss_pred HHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh----C----CCCCcchHHHHHHHHHhcCCHHH-HHHHHHHH
Q 040643 337 LHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT----T----ETENVVLWNVMLVAYGQLNDLSE-SFQIFKQM 407 (968)
Q Consensus 337 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~----~----~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m 407 (968)
+..+|+...+.||.+++|+++.+.++.|+++.|++.+-+ | .+|...+|..+|..+.+.++..+ |..++.++
T Consensus 260 Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI 339 (625)
T KOG4422|consen 260 LVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI 339 (625)
T ss_pred HHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence 999999999999999999999999999999988877644 3 26888999999999999888643 45555554
Q ss_pred Hh----cCCCC----CccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC--CCCceeHHHHHHHHHhcCChh
Q 040643 408 QT----EGLTP----NQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP--EDDVVSWTAMIVGFVQHGMFG 477 (968)
Q Consensus 408 ~~----~g~~p----~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~ 477 (968)
+. +.++| |...|.+.+..|.+..+.+.|.+++..+..-+. .+.+. ....+.|..+....++....+
T Consensus 340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N----~~~ig~~~~~~fYyr~~~~licq~es~~ 415 (625)
T KOG4422|consen 340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDN----WKFIGPDQHRNFYYRKFFDLICQMESID 415 (625)
T ss_pred HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc----hhhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33444 344577788889999999999988876611110 11111 112345677888899999999
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHH
Q 040643 478 EALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYA 541 (968)
Q Consensus 478 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 541 (968)
.-+.+|+.|.-+-.-|+..+...+++|....+.++...+++..++..|......+..-++...+
T Consensus 416 ~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 416 VTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 9999999999998999999999999999999999999999999988876554444443433333
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.67 E-value=8.2e-13 Score=146.19 Aligned_cols=711 Identities=13% Similarity=0.029 Sum_probs=396.2
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCCCCccchHH
Q 040643 2 EERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWNK 81 (968)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~ 81 (968)
.+.|+.|+.+||.++|..|+.-|+.+-|. +|.-|.-.........++.++......++.+.|. +|...+|+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~ 88 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTN 88 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHH
Confidence 45688888888888888888888887777 8887776666667777888888888777777764 677789999
Q ss_pred HHHHHHhcCChhh---HHHHHHHhH----hCCCCCCcccHHHHHHHhhcCCCccc-----hhhhHHHHHHHHhCCCCCcc
Q 040643 82 LISGFVAKKLSGR---VLGLFLQMI----DDDVIPNEATFVGVLRACIGSGNVAV-----QCVNQIHGLIISHGFGGSPL 149 (968)
Q Consensus 82 li~~~~~~g~~~~---a~~~~~~m~----~~~~~p~~~~~~~ll~~~~~~~~~~~-----~~~~~i~~~~~~~g~~~~~~ 149 (968)
+..+|...|+... ..+.+.... ..|+......|...+.+|-..-.-.+ ...+.+++..++.+..-.++
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvs 168 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVS 168 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcc
Confidence 9999999998654 333222221 23333333344444444432211000 02345566666666333333
Q ss_pred chhHHHHH-HHhcC-CchHHHHHHhh---C-CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHh
Q 040643 150 ISNPLIDL-YAKNG-FIDSAKKVFNN---L-CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSA 223 (968)
Q Consensus 150 ~~~~li~~-y~~~g-~~~~A~~~f~~---~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 223 (968)
.++.-... +..+- .....+++.+. . ..++..++.+++.+-..+|+.+.|..++.+|.+.|++.++.-|-.+|-+
T Consensus 169 a~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g 248 (1088)
T KOG4318|consen 169 AWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG 248 (1088)
T ss_pred cccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc
Confidence 33222111 22221 12222333222 2 2478889999999999999999999999999999999999988888766
Q ss_pred hcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHH
Q 040643 224 CTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELF 303 (968)
Q Consensus 224 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~ 303 (968)
.++...+..+..-|...|+.|+..++.--+-...+.|....+... .++...+++-+..-+-.| ..|.+.+
T Consensus 249 ---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~-----sq~~hg~tAavrsaa~rg--~~a~k~l 318 (1088)
T KOG4318|consen 249 ---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG-----SQLAHGFTAAVRSAACRG--LLANKRL 318 (1088)
T ss_pred ---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc-----cchhhhhhHHHHHHHhcc--cHhHHHH
Confidence 777888888899999999999999998877777665553322221 122222222222222222 2222222
Q ss_pred ------------HHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHH
Q 040643 304 ------------EKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYK 371 (968)
Q Consensus 304 ------------~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 371 (968)
.+..-.|+.-....|.... -....|.-+...++-+.+.. |.....+.-++.| ...+++
T Consensus 319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~n----pt~r~s~~~V~a~-----~~~lrq 388 (1088)
T KOG4318|consen 319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLN----PTLRDSGQNVDAF-----GALLRQ 388 (1088)
T ss_pred HHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcC----CccccCcchHHHH-----HHHHHH
Confidence 2211223222222222111 11223444444444444332 1111111122222 123455
Q ss_pred HHhhCCCCCcc-hHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHH
Q 040643 372 FFLTTETENVV-LWNVMLVAYGQ---LNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNT 447 (968)
Q Consensus 372 ~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~ 447 (968)
.|.+...+... .++ .-.+... .....+..++.... .||..- ..+.. +..
T Consensus 389 yFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~l-----rkns~l-r~lv~--------------------Lss 441 (1088)
T KOG4318|consen 389 YFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENL-----RKNSFL-RQLVG--------------------LSS 441 (1088)
T ss_pred HHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHh-----CcchHH-HHHhh--------------------hhH
Confidence 56555544332 222 2222222 22223333333322 222110 00000 000
Q ss_pred HHHHHhhCC------CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhh
Q 040643 448 AQEILRRLP------EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQS 521 (968)
Q Consensus 448 a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~ 521 (968)
+ ++.+... .+-...-+.++..++..-+..+++..-+.....- -| ..|..+|+-|.....++.|..+.++.
T Consensus 442 ~-Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~l-f~--g~ya~Li~l~~~hdkle~Al~~~~e~ 517 (1088)
T KOG4318|consen 442 T-ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLL-FA--GLYALLIKLMDLHDKLEYALSFVDEI 517 (1088)
T ss_pred H-HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hh--hHHHHHhhhHHHHHHHHHHHhchhhh
Confidence 0 0000000 0001123445566666656666654444433321 11 55788888888888888888888877
Q ss_pred hhh--cCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC----C--cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 522 YIS--GFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK----D--NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 522 ~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~----d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
... .+..|...+..+.+...+.+...++.+++.++.+. + ..+.--|..+-+..|+.+.-.++++-+...|+.
T Consensus 518 d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~ 597 (1088)
T KOG4318|consen 518 DTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLS 597 (1088)
T ss_pred cccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhh
Confidence 553 34567777889999999999999999999988753 1 123444667778889988888888887776654
Q ss_pred CCcch-------------HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHH---hHHhhHHHhcCCHHHHHHHHhcC
Q 040643 594 ANLYT-------------FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEAS---NSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 594 p~~~t-------------~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
-+-.. .-.-...|-+..-.....+.+..++..+-..++... ..=+.+|.|+|+..+|.++.+.-
T Consensus 598 etgPl~~vhLrkdd~s~a~ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etp 677 (1088)
T KOG4318|consen 598 ETGPLWMVHLRKDDQSAAQEAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETP 677 (1088)
T ss_pred hcccceEEEeeccchhhhhhcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccC
Confidence 32110 001111222233333344444444443322222211 12234689999999998887642
Q ss_pred C-----CCC--------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc---
Q 040643 658 P-----EKN--------------------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH--- 709 (968)
Q Consensus 658 ~-----~~d--------------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~--- 709 (968)
- .+| ..-..-++..|...|+.+.|..++.+|. +.|+..+...|.+.+..
T Consensus 678 G~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~Q---V~k~~~~l~~LAsIlr~~n~ 754 (1088)
T KOG4318|consen 678 GVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQ---VSKSPMKLFHLASILRRMNE 754 (1088)
T ss_pred cccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCc---CCcchHHHHHHHHHHHhhch
Confidence 1 111 1112337889999999999999999998 78888877766666554
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCCcchHHH-HHHHHhhcCChHHHHHHHHhCC--CCC-CHHHHHHHHHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPKPEHYAC-VVDLLGRAGCLSRAREFTEQMP--IEP-DAMVWRTLLSA 774 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~-lv~~l~r~G~~~eA~~~~~~m~--~~p-~~~~~~~ll~~ 774 (968)
.-++-+++..-+...+.+..-|..++|.. -+-...+..+.+-|.+.+.+.. ..| ++..+..++..
T Consensus 755 evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~v~tad~ls~f~k~ 823 (1088)
T KOG4318|consen 755 EVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLTVSTADELSDFLKC 823 (1088)
T ss_pred hccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 33566666666666555555666555432 2233444555557788887762 222 34444444443
No 27
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.67 E-value=4.4e-14 Score=166.78 Aligned_cols=324 Identities=11% Similarity=-0.018 Sum_probs=262.9
Q ss_pred hhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHH
Q 040643 495 NIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGF 571 (968)
Q Consensus 495 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~ 571 (968)
......++..+...|+++.+..++..++.....+....++ ++......|+.++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445667778889999999999999998887776544444 55666779999999999998864 3556788899999
Q ss_pred HhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 572 AQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 572 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.+.|++++|+..|++.... .|+. ..+..+..++...|+.++|...+..+...... +...+..+. .+...|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999865 5554 45667778889999999999999887765432 233333333 47889999999
Q ss_pred HHHHhcCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHH----HHHHHH
Q 040643 651 KREFLEMPEK----NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNE----GLRYFE 721 (968)
Q Consensus 651 ~~~f~~~~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~----a~~~~~ 721 (968)
..+++.+.+. +...+..+...+...|+.++|+..|+++.+ ..|+ ...+..+..++...|++++ |...|+
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 9999986532 334455567788999999999999999998 5676 4567788889999999986 799999
Q ss_pred HhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 722 SMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 722 ~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
...+ +.|+ ...+..++.+|.+.|++++|...+++. ...|+ ..++..|..++...|+++.|...++++++.+|++
T Consensus 275 ~Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 275 HALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred HHHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 8754 4666 678889999999999999999999987 56666 6677778888999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 799 SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+..+..++.+|...|++++|....+...+.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 888888899999999999999986665443
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.65 E-value=1.7e-12 Score=153.29 Aligned_cols=407 Identities=10% Similarity=0.069 Sum_probs=231.9
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCCCcch-HHHH--HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCc
Q 040643 355 SMLDLYVKCSDVETAYKFFLTTETENVVL-WNVM--LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGA 431 (968)
Q Consensus 355 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~-~~~l--i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 431 (968)
.++..+...|+.++|+..+++...|+... +..+ ...|...|++++|+++|+++.+.. |+
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~---------------- 134 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PT---------------- 134 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC----------------
Confidence 66666666677777777777766553332 2222 335666677777777777776542 21
Q ss_pred hhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch
Q 040643 432 LSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL 511 (968)
Q Consensus 432 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 511 (968)
|...+..++..+.+.++.++|++.++++... .|+...+..++......++.
T Consensus 135 ---------------------------n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 135 ---------------------------NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred ---------------------------CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 2223334445555555666666666555443 33333332222222223333
Q ss_pred hhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCC-CcccHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 040643 512 NQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAK-DNISWNGLISGFAQSGYCEGALQVFSQMTQV 590 (968)
Q Consensus 512 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 590 (968)
..+.+.+..+++..+ .+...+..++....+.|-...|.++..+-+.- +...+.-+ . .+.|-+ +.+.
T Consensus 186 ~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l-~-------~~~~a~----~vr~ 252 (822)
T PRK14574 186 YDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL-E-------RDAAAE----QVRM 252 (822)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH-H-------HHHHHH----HHhh
Confidence 335555555554432 24445555666666677666666666554321 00000000 0 011111 1111
Q ss_pred CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHH-hCC-CCChh-HHhHHhh---HHHhcCCHHHHHHHHhcCCCCC---
Q 040643 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIK-TGY-DSETE-ASNSLIT---LYAKCGSIDDAKREFLEMPEKN--- 661 (968)
Q Consensus 591 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~-~g~-~~~~~-~~~~li~---~y~k~g~~~~A~~~f~~~~~~d--- 661 (968)
+..|+..- -.+-.-++.+..-.+.+.. .+- ++... ...+.+| ++.+.|+..++++.|+.+..+.
T Consensus 253 a~~~~~~~-------~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~ 325 (822)
T PRK14574 253 AVLPTRSE-------TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM 325 (822)
T ss_pred cccccccc-------hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC
Confidence 11111000 0000112333333333332 111 11111 1233333 4557778888888888877221
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcC-------
Q 040643 662 -EVSWNAMITGFSQHGYALEAINLFEKMKKHD----VMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYG------- 728 (968)
Q Consensus 662 -~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~------- 728 (968)
..+--+...+|...+++++|+.+|++..... ..|+ ......|..|+..++.+++|..+++.+.+.-.
T Consensus 326 P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~ 405 (822)
T PRK14574 326 PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYG 405 (822)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccC
Confidence 2344567778888888888888888876532 1122 22356778888888888888888888865211
Q ss_pred ---CCCC---cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 729 ---LVPK---PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 729 ---i~p~---~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
-.|+ .+.+..++..+...|++.+|++.++++ ...| |..++..+....+..|+...|+...+.+..++|++..
T Consensus 406 ~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~ 485 (822)
T PRK14574 406 LPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI 485 (822)
T ss_pred CCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence 0122 333455677788899999999998888 3444 4777888888889999999999999998899999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.++.++..+-..|+|++|.++.+...+.
T Consensus 486 ~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 486 LERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999998876555443
No 29
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.63 E-value=1.1e-12 Score=158.55 Aligned_cols=398 Identities=10% Similarity=0.039 Sum_probs=199.8
Q ss_pred HhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC--C-CcccHHHHHHHHHcCCChhH
Q 040643 222 SACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ--R-DGVTYNSLISGLAQCGYSDK 298 (968)
Q Consensus 222 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~~~~ 298 (968)
......|+.++|.+++....... +.+...+..+...+.+.|++++|..+|++... | +...+..+...+...|++++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e 101 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE 101 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33344444444444444443311 22333455555566666666666666665321 2 33445556666666666666
Q ss_pred HHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC
Q 040643 299 ALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET 378 (968)
Q Consensus 299 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~ 378 (968)
|+..+++.... .|+...+..+..++...|+.+.|...+..+++.. +.+..+...+...+.+.|..+.|.+.++....
T Consensus 102 A~~~l~~~l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~ 178 (765)
T PRK10049 102 ALVKAKQLVSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL 178 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence 66666666544 2332225555555566666666666666666654 33444555566777777778888887776664
Q ss_pred CCcc--------hHHHHHHHHH-----hcCCH---HHHHHHHHHHHhc-CCCCCccchhhhhhhhccCCchhhhHHHHHh
Q 040643 379 ENVV--------LWNVMLVAYG-----QLNDL---SESFQIFKQMQTE-GLTPNQYTYPTILRTCTSLGALSLGEQIHTQ 441 (968)
Q Consensus 379 ~~~~--------~~~~li~~~~-----~~g~~---~~A~~l~~~m~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 441 (968)
+.. ....++.... ..+++ ++|++.++.+.+. ...|+... ...
T Consensus 179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~------------------ 237 (765)
T PRK10049 179 -TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DYQ------------------ 237 (765)
T ss_pred -CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HHH------------------
Confidence 211 1111111111 11223 5566666666543 12221110 000
Q ss_pred hCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-CChhhHHHHHHHhhcccchhhhhhhhHh
Q 040643 442 LGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQ-SDNIGFSSAISACAGIQALNQGRQIHAQ 520 (968)
Q Consensus 442 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 520 (968)
......+..+...|++++|+..|+++.+.+.. |+..-
T Consensus 238 -------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~----------------------- 275 (765)
T PRK10049 238 -------------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ----------------------- 275 (765)
T ss_pred -------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH-----------------------
Confidence 01111133445668899999999998876421 32111
Q ss_pred hhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCc-------ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 521 SYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDN-------ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 521 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
-.+...|...|++++|...|+++...+. ..+..+..++.+.|++++|+++++++....
T Consensus 276 -------------~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-- 340 (765)
T PRK10049 276 -------------RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-- 340 (765)
T ss_pred -------------HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC--
Confidence 1134456666666666666665533221 224445556777777788877777776542
Q ss_pred CCcc-hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC---hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHH
Q 040643 594 ANLY-TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE---TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWN 666 (968)
Q Consensus 594 p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~ 666 (968)
|... .+.... -.|+ ......+..++...|++++|+++|+++. ..+...|.
T Consensus 341 P~~~~~~~~~~-----------------------~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 341 PPFLRLYGSPT-----------------------SIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred CceEeecCCCC-----------------------CCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 2111 111000 0111 1122333444445555555555555543 22344555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
.+...+...|++++|++.+++.++ +.||.. .+..........|++++|...++.+.+.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 555555555555555555555555 445432 3334444555555555555555555443
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=3.9e-12 Score=129.74 Aligned_cols=332 Identities=18% Similarity=0.193 Sum_probs=233.3
Q ss_pred cchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhh--cCCCccchhhh-HHHHHHHHhCCCCCccchhH
Q 040643 77 FSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACI--GSGNVAVQCVN-QIHGLIISHGFGGSPLISNP 153 (968)
Q Consensus 77 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--~~~~~~~~~~~-~i~~~~~~~g~~~~~~~~~~ 153 (968)
.+=|.++. ...+|..+++.-+|+.|+..|+..++..-..+++.-+ .+.+.. .++ +-+-.+.+.|- .+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~--~~E~~~Fv~~~~~~E-~S~~sW-- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVP--FAEWEEFVGMRNFGE-DSTSSW-- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCc--chhHHHHhhcccccc-cccccc--
Confidence 35566665 4558899999999999999998877766666655332 333333 221 12222223332 222222
Q ss_pred HHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHH
Q 040643 154 LIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIG 233 (968)
Q Consensus 154 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 233 (968)
|.|.+.+ -+|+..| +...++.+||.|+++-...+.|.++|.+-.....+.+..+||.+|.+-+- ..+
T Consensus 191 ------K~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~ 257 (625)
T KOG4422|consen 191 ------KSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVG 257 (625)
T ss_pred ------ccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hcc
Confidence 4555544 5555555 45578999999999999999999999999999899999999999988653 345
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHh----hCC----CCCcccHHHHHHHHHcCCChhH-HHHHHH
Q 040643 234 EQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFS----KMQ----QRDGVTYNSLISGLAQCGYSDK-ALELFE 304 (968)
Q Consensus 234 ~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~m~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~ 304 (968)
+.+..+|+...+.||.+++|+++...++.|+++.|++.+- +|+ +|...+|..+|.-+++.+++.+ |..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 8999999999999999999999999999999988876654 443 5888899999999999988854 444444
Q ss_pred Hhhc----cccCC----CcccHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCC---hhhHhHHHHHHHhcCChhHH
Q 040643 305 KMQL----DCLKP----DCVTVASLVSACASVGAFRTGEQLHSYAIKVG----ISKD---IIVEGSMLDLYVKCSDVETA 369 (968)
Q Consensus 305 ~m~~----~g~~p----~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~---~~~~~~Li~~y~~~g~~~~A 369 (968)
+... ..++| |...|.+.+..|.+..+.+.|.++++....-. +.++ .+-|..+....+....++.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4432 22333 33458899999999999999999998664321 2232 24556677777777778877
Q ss_pred HHHHhhCCC----CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhc
Q 040643 370 YKFFLTTET----ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCT 427 (968)
Q Consensus 370 ~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 427 (968)
...++.|.. |+..+-..++.+..-+|.++-.-+++.+|+..|..-+.....-++..++
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 777777653 4555566677777777777777777777777665444443333333333
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=7e-11 Score=139.83 Aligned_cols=425 Identities=10% Similarity=0.081 Sum_probs=209.3
Q ss_pred hccCChhHHHHHHhhCCCCCcc---cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHH---HHHHhccCChHH
Q 040643 260 SRSGNLTSAEQIFSKMQQRDGV---TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASL---VSACASVGAFRT 333 (968)
Q Consensus 260 ~~~g~~~~A~~~f~~m~~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l---l~a~~~~~~~~~ 333 (968)
.+.|+++.|+..|++..+.+.. ....++..+...|+.++|+..+++.. .|+...+..+ ...+...|+++.
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4455555555555555432221 12255555555555555555555554 2322222211 223444455556
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHh--cCCHHHHHHHHHHHHhcC
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQ--LNDLSESFQIFKQMQTEG 411 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g 411 (968)
|.++++.+++.. +.+..++..++..|...++.++|.+.++++...+......+..+|.. .++..+|++.++++.+..
T Consensus 121 Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 121 ALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred HHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 666665555554 22344455666666666777777777766654433222223333333 344444777777776653
Q ss_pred CCCC-ccchhhhhhhhccCCchhhhHHHHHhhCCh-----------HHHHHHHhhCCCCCceeHHHHHHHHHhcCC---h
Q 040643 412 LTPN-QYTYPTILRTCTSLGALSLGEQIHTQLGNL-----------NTAQEILRRLPEDDVVSWTAMIVGFVQHGM---F 476 (968)
Q Consensus 412 ~~p~-~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~-----------~~a~~~~~~~~~~~~~~~~~li~~~~~~g~---~ 476 (968)
|+ ...+..+..++.+.|-...+.++.....++ +.+.+..+....++. ...++ .
T Consensus 200 --P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~----------~~~~r~~~~ 267 (822)
T PRK14574 200 --PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTR----------SETERFDIA 267 (822)
T ss_pred --CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccc----------cchhhHHHH
Confidence 43 333444555555555544444443322110 001111100000000 00111 2
Q ss_pred hHHHHHHHHHHhc-CCCCCh-hhH----HHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHH
Q 040643 477 GEALELFEEMENQ-GIQSDN-IGF----SSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAY 550 (968)
Q Consensus 477 ~~A~~l~~~m~~~-g~~pd~-~t~----~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 550 (968)
+.|+.-++.+... +-.|.. .-| .--+-+....++...+.+.+..+...+.+....+.-++.++|...++.++|.
T Consensus 268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence 3445555554431 111221 111 1223344555555555555655555555444455556666666666666666
Q ss_pred HHHHhCCCC---------CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhhhHHHHHHHHH
Q 040643 551 LVFNKIDAK---------DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLANIKQGKQVHA 620 (968)
Q Consensus 551 ~~f~~m~~~---------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~ 620 (968)
.++.++... +......|.-+|..++++++|..+++++.+. .|..+. |..- .
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~~~~----~------------- 408 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVYGLP----G------------- 408 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEeccCCC----C-------------
Confidence 666654221 1111344556666666666666666666542 221000 0000 0
Q ss_pred HHHHhCCCCC-hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 621 MIIKTGYDSE-TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 621 ~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
....|| ......++..+...|++.+|++.++++. .-|...+..+...+...|.+.+|.+.++.... +.|+
T Consensus 409 ----~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~ 482 (822)
T PRK14574 409 ----KEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVES--LAPR 482 (822)
T ss_pred ----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCc
Confidence 000111 1223344555667777777777777765 23666777777777777777777777766555 5665
Q ss_pred h-HHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 697 H-VTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 697 ~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
. .+......+....|++++|....+.....
T Consensus 483 ~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 483 SLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 4 35666666666777777777777666544
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.47 E-value=1.2e-07 Score=102.57 Aligned_cols=369 Identities=9% Similarity=0.083 Sum_probs=279.1
Q ss_pred eeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHH
Q 040643 461 VSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLY 540 (968)
Q Consensus 461 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 540 (968)
.+|+.-...|.+.+.++-|..+|...++- .+-+...|..+...--..|..+....++..++..-.. ....|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHHH
Confidence 47777788888888888888888777663 2224444555555545556666666666666665443 334455555566
Q ss_pred HHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHH
Q 040643 541 ARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQ 617 (968)
Q Consensus 541 ~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 617 (968)
-+.|++..|+.++++.-+. +...|-+-+..-..+.++++|..+|.+... ..|+...|.--+..---++..++|.+
T Consensus 595 w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~r 672 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALR 672 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHH
Confidence 6789999999888776543 445688888888899999999999998876 46676666655555566788999999
Q ss_pred HHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040643 618 VHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM 694 (968)
Q Consensus 618 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 694 (968)
+++..++. ++.-...|-.+...|-..++++.|.+.|..-.. | .+..|-.+...--+.|..-+|..+|++.+.. .
T Consensus 673 llEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--N 749 (913)
T KOG0495|consen 673 LLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--N 749 (913)
T ss_pred HHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--C
Confidence 99888775 455567888888999999999999999887653 3 4568888888888899999999999998873 5
Q ss_pred C-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 040643 695 P-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLS 773 (968)
Q Consensus 695 P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~ 773 (968)
| |...|...+..=.+.|..++|.....+..++ .+-+...|+--|.+..|.++-..+.+-+++..-.| .+.-+...
T Consensus 750 Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~dp--hVllaia~ 825 (913)
T KOG0495|consen 750 PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDP--HVLLAIAK 825 (913)
T ss_pred CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccCCc--hhHHHHHH
Confidence 6 4668899999999999999999988877665 23346678888888889888887777777764444 44455566
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEc
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVK 842 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~ 842 (968)
.+.....++.|..-++++++.+|++..++..+-..+...|.-++-.+|+++-.... ..-|-.|+-+.
T Consensus 826 lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 826 LFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 67777889999999999999999999999999999999999999999988765432 23477777543
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.44 E-value=1.1e-09 Score=123.01 Aligned_cols=148 Identities=21% Similarity=0.236 Sum_probs=107.8
Q ss_pred HhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCc-ccHHHHHHHHhccCChHH
Q 040643 258 LYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDC-VTVASLVSACASVGAFRT 333 (968)
Q Consensus 258 ~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~ 333 (968)
.+++ |++++|.+++.++.. ++...|.+|-..|-+.|+.++++..+-. .....|.. .-|..+-.-....|.+.+
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~ll--AAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLL--AAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHH--HHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3444 999999999998864 3567899999999999999999877643 34445554 446666666678889999
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCc--------chHHHHHHHHHhcCCHHHHHHHHH
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENV--------VLWNVMLVAYGQLNDLSESFQIFK 405 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~l~~ 405 (968)
|.-.+..+++.. +++....---..+|-+.|+...|..-|.++...+. ..--.+++.|...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999886 45555555667889999999999888877654322 122234566667777777877777
Q ss_pred HHHh
Q 040643 406 QMQT 409 (968)
Q Consensus 406 ~m~~ 409 (968)
....
T Consensus 305 ~~~s 308 (895)
T KOG2076|consen 305 GALS 308 (895)
T ss_pred HHHh
Confidence 6654
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.42 E-value=1.2e-08 Score=110.01 Aligned_cols=460 Identities=13% Similarity=0.098 Sum_probs=287.1
Q ss_pred HHhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHHHH----hhccccCCCcccHHHHHHHHhccC
Q 040643 257 TLYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELFEK----MQLDCLKPDCVTVASLVSACASVG 329 (968)
Q Consensus 257 ~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~ll~a~~~~~ 329 (968)
-+|++...++.|..+++...+ .+...|-+-..---++|+.+....+..+ +...|+..|...|..=..+|-..|
T Consensus 414 lAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag 493 (913)
T KOG0495|consen 414 LALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG 493 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence 344444555566666555442 2445565555544556665555555443 234455666555555555565556
Q ss_pred ChHHHHHHHHHHHHhCCCCC--hhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHH
Q 040643 330 AFRTGEQLHSYAIKVGISKD--IIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIF 404 (968)
Q Consensus 330 ~~~~a~~~~~~~~~~g~~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 404 (968)
..-.+..+...++..|++.. ..+++.-.+.+.+.+.++-|+.+|....+ .+...|...+..--..|..++-..+|
T Consensus 494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All 573 (913)
T KOG0495|consen 494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL 573 (913)
T ss_pred ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH
Confidence 65555555555555554332 23444444444444444444444433221 12223333332222233333333333
Q ss_pred HHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHH
Q 040643 405 KQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFE 484 (968)
Q Consensus 405 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 484 (968)
++.... .+...+.|-.....+-..|+...|..++.
T Consensus 574 qkav~~---------------------------------------------~pkae~lwlM~ake~w~agdv~~ar~il~ 608 (913)
T KOG0495|consen 574 QKAVEQ---------------------------------------------CPKAEILWLMYAKEKWKAGDVPAARVILD 608 (913)
T ss_pred HHHHHh---------------------------------------------CCcchhHHHHHHHHHHhcCCcHHHHHHHH
Confidence 222211 01223344444444444555555555555
Q ss_pred HHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcc
Q 040643 485 EMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA--KDNI 562 (968)
Q Consensus 485 ~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~ 562 (968)
+.. ..... +..+|-+-+..-.....++.|+.+|.+... +...
T Consensus 609 ~af-----------------------------------~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeR 652 (913)
T KOG0495|consen 609 QAF-----------------------------------EANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTER 652 (913)
T ss_pred HHH-----------------------------------HhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcch
Confidence 444 43332 445566666666677777777777766543 2334
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc-hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY-TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
.|.--+..---.+..++|++++++..+. -|+-. .|..+-..+-+.++++.|+..+..=.+. .+..+..|-.|.+.=
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakle 729 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLE 729 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHH
Confidence 4554444445567788888888776654 45544 3444445566777777777776554442 355678899999999
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLR 718 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 718 (968)
-+.|++-.|+.+|++.. .+|...|-..|..-.++|+.++|..+..+.++. ++-+...|.--+...-+.+.-.....
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHH
Confidence 99999999999999876 347889999999999999999999999988873 33345667777776677776555555
Q ss_pred HHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 719 YFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 719 ~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
.+++. +-++...-.+..++....++++|.+.|++. ...|| ..+|--+......||+-+.-+.+..+...-+|
T Consensus 809 ALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 809 ALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 55433 344555667778889999999999999887 67787 78999999999999999999999999999999
Q ss_pred CCcchHHHHHH
Q 040643 797 EDSATYVLLSN 807 (968)
Q Consensus 797 ~~~~~~~~l~~ 807 (968)
.....+...|.
T Consensus 883 ~hG~~W~avSK 893 (913)
T KOG0495|consen 883 THGELWQAVSK 893 (913)
T ss_pred CCCcHHHHHhh
Confidence 98887766653
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.42 E-value=2.6e-10 Score=117.09 Aligned_cols=477 Identities=14% Similarity=0.125 Sum_probs=306.7
Q ss_pred HHHHHHcCCChhHHHHHHHHhhccccCCCcccH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhhHhHHHHHH
Q 040643 286 LISGLAQCGYSDKALELFEKMQLDCLKPDCVTV-ASLVSACASVGAFRTGEQLHSYAIKVGISKD----IIVEGSMLDLY 360 (968)
Q Consensus 286 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~Li~~y 360 (968)
|.+-|..+....+|+..++-+.+...-||.-.. ..+-..+.+...+..|.+.+...+..-...+ +.+.+.+--.+
T Consensus 207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf 286 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF 286 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence 445677777888999999988888777776543 2233345566677888888877765532222 23445555567
Q ss_pred HhcCChhHHHHHHhhCCC--CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHH
Q 040643 361 VKCSDVETAYKFFLTTET--ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQI 438 (968)
Q Consensus 361 ~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 438 (968)
.+.|++++|..-|+.+.+ ||..+--.++-++.--|+.++..+.|.+|..-...||..-|..
T Consensus 287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~----------------- 349 (840)
T KOG2003|consen 287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK----------------- 349 (840)
T ss_pred EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-----------------
Confidence 788999999999988653 5665544455556667888999999999988776666654421
Q ss_pred HHhhCChHHHHHHHhhCCCCCceeHHH-----HHHHHHhcC--ChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch
Q 040643 439 HTQLGNLNTAQEILRRLPEDDVVSWTA-----MIVGFVQHG--MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL 511 (968)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-----li~~~~~~g--~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 511 (968)
.-..|+....|- ++.-+-+.. +.++++-.--+++.--+.||-.. -.
T Consensus 350 ---------------~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~ 402 (840)
T KOG2003|consen 350 ---------------EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GC 402 (840)
T ss_pred ---------------CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------cc
Confidence 001122222211 111111111 12222222222332223333110 00
Q ss_pred hhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHH----H-HHHHHhcC-ChhhHHHHHH
Q 040643 512 NQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNG----L-ISGFAQSG-YCEGALQVFS 585 (968)
Q Consensus 512 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~----l-i~~~~~~g-~~~~A~~l~~ 585 (968)
+...+.+....-..+..+.. -.-..-|.+.|+++.|.+++.-...+|..+-++ | .--|.+-| ++..|.+.-+
T Consensus 403 dwcle~lk~s~~~~la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad 480 (840)
T KOG2003|consen 403 DWCLESLKASQHAELAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYAD 480 (840)
T ss_pred HHHHHHHHHhhhhhhhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHH
Confidence 11111111111000111111 112345789999999998888777665443322 2 22233333 4555555544
Q ss_pred HhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCH
Q 040643 586 QMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNE 662 (968)
Q Consensus 586 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~ 662 (968)
...... +-|....+.--+.....|++++|.+.+..++...-......|| +.-.|-+.|++++|.+.|-++. ..++
T Consensus 481 ~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~ 558 (840)
T KOG2003|consen 481 IALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNA 558 (840)
T ss_pred HHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhH
Confidence 433211 1111111111112234689999999998887654222223333 2335778999999999998765 5577
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVV 740 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv 740 (968)
...-.+.+.|-...+..+|++++-+... +.|+ +..+.-|...|-+.|+-.+|.++.- ..|..-|. +++..-+.
T Consensus 559 evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~y---dsyryfp~nie~iewl~ 633 (840)
T KOG2003|consen 559 EVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHY---DSYRYFPCNIETIEWLA 633 (840)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhh---hcccccCcchHHHHHHH
Confidence 7777888999999999999999988776 6775 6677788889999999999998876 34566665 88888888
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc
Q 040643 741 DLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSAC-RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
.-|....-.++|..++++. -+.|+.+-|..++.+| |..||++.|....+.+...-|+|....-.|..+....|.-
T Consensus 634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 8899999999999999998 5899999999999987 6789999999999999999999999999999998888764
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.41 E-value=5.5e-13 Score=141.87 Aligned_cols=250 Identities=18% Similarity=0.193 Sum_probs=104.0
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHH-HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHH
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS-AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDD 649 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 649 (968)
+.+.|++++|++++++-......|+...|-.++. .+-..++.+.|.+.+..+...+- .++..+..++.. ...+++++
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~ 95 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEE 95 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-cccccccc
Confidence 3344444444444433322221233333332222 22334455555555555544332 134455566665 57778888
Q ss_pred HHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChHHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 650 AKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDV-MPNHVTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 650 A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
|.+++...- .++...|..++..+...|+.+++.+++++.....- .+|...|..+...+.+.|+.++|.+.++...+.
T Consensus 96 A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 96 ALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 887777653 34666777788888888888888888888765332 234556667777778888888888888877543
Q ss_pred cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 727 YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 727 ~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
.|+ ......++.++...|+.++|.++++.. ..++|+..|..+..++...|+.+.|....+++++..|+|+....
T Consensus 176 ---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~ 252 (280)
T PF13429_consen 176 ---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLL 252 (280)
T ss_dssp ----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHH
T ss_pred ---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccc
Confidence 665 666777888888888888877777665 12345668889999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHH
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.++.++...|+.++|.++|+..
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHT---------------
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999997754
No 37
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=1.6e-06 Score=98.24 Aligned_cols=737 Identities=12% Similarity=0.120 Sum_probs=377.8
Q ss_pred HhhhhCCCcchHHHhhhccCC---CCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccc
Q 040643 53 NIYLTSGDLDSAMKIFDDMSK---RTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAV 129 (968)
Q Consensus 53 ~~~~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 129 (968)
+.+..+|++++|-++-..-|+ +++-|-|.+-..=...|.....+..|..+...|..-...|. .+.+.-...+...
T Consensus 368 neLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqGkLNk~ETL-EL~RpVL~Q~Rkq- 445 (1666)
T KOG0985|consen 368 NELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQGKLNKYETL-ELCRPVLQQGRKQ- 445 (1666)
T ss_pred HHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcccccHHHHH-HHHHHHHhhhHHH-
Confidence 334446777777777666554 34444444444444556666666666666666522111121 1111111111111
Q ss_pred hhhhHHHH-----HHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhC--------------CCCCeehHHHHHHHHH
Q 040643 130 QCVNQIHG-----LIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNL--------------CFKDSVSWVAMISGFS 190 (968)
Q Consensus 130 ~~~~~i~~-----~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--------------~~~~~~~~~~li~~~~ 190 (968)
..+.... -..+.|-...++-.+.-++.|.+.+-+..+...|.+. ..|| |-.+|+...
T Consensus 446 -LlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPd---ymflLq~l~ 521 (1666)
T KOG0985|consen 446 -LLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPD---YMFLLQQLK 521 (1666)
T ss_pred -HHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCcc---HHHHHHHHH
Confidence 1111100 0111221111111222334444444444444444333 1233 455666665
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHH
Q 040643 191 QNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQ 270 (968)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 270 (968)
+ -.++++.++...|.+..- ...-++.+...+........+..+.-.+++..-+....+.+.|+.+-...+ ++-|..
T Consensus 522 r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~a-PqVADA 597 (1666)
T KOG0985|consen 522 R-SSPDQALQFAMMLVQDEE--PLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHA-PQVADA 597 (1666)
T ss_pred c-cChhHHHHHHHHhhccCC--CcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccc-hHHHHH
Confidence 5 567777777766665321 222334444444444444444444444444332223344455554433221 222222
Q ss_pred HHh-hCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhcc---ccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 040643 271 IFS-KMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD---CLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGI 346 (968)
Q Consensus 271 ~f~-~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 346 (968)
++- .|- .-.-|-.+.+-|.++|-...|++.+.....- -+..+...-..++ .+...-.++...+.+..|...++
T Consensus 598 ILgN~mF--tHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~Ni 674 (1666)
T KOG0985|consen 598 ILGNDMF--THYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANI 674 (1666)
T ss_pred HHhcccc--ccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHH
Confidence 211 111 1112777777888888888888777665321 0000000011111 22223355667777777777777
Q ss_pred CCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---------------CCcchHHHHHHHHHhcCCHHHHHHHHHHH----
Q 040643 347 SKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---------------ENVVLWNVMLVAYGQLNDLSESFQIFKQM---- 407 (968)
Q Consensus 347 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m---- 407 (968)
..+..+.-.+..-|...=..+.-.++|+.... .|...--..|.+-++.|++.+..++-++-
T Consensus 675 rqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~Yd 754 (1666)
T KOG0985|consen 675 RQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYD 754 (1666)
T ss_pred HhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCC
Confidence 77766666666666666556666666655432 23444456678888888888777665431
Q ss_pred --------HhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCC---------------------
Q 040643 408 --------QTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPED--------------------- 458 (968)
Q Consensus 408 --------~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--------------------- 458 (968)
++.. -+|.. .++-.|-+-+-.... -++-.-+++..-.+++-+-..|
T Consensus 755 pErvKNfLkeAk-L~Dql---PLiiVCDRf~fVhdl-vlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik 829 (1666)
T KOG0985|consen 755 PERVKNFLKEAK-LTDQL---PLIIVCDRFDFVHDL-VLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIK 829 (1666)
T ss_pred HHHHHHHHHhcc-ccccC---ceEEEecccccHHHH-HHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHH
Confidence 1111 11111 111222222111110 0111113333333333322221
Q ss_pred -------CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhh----------hhhhHhh
Q 040643 459 -------DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQG----------RQIHAQS 521 (968)
Q Consensus 459 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a----------~~i~~~~ 521 (968)
..+.-+-|+.-.-+.++..--+.+++...++|. -|..|++.+-..+..+++-.+. +-+-.+.
T Consensus 830 ~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYC 908 (1666)
T KOG0985|consen 830 NLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYC 908 (1666)
T ss_pred HHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhh
Confidence 111222233333344445555555666666663 4667777777777766542211 1111111
Q ss_pred hhhcCCC----------C---------chhhhhHHHHHHHcCCHHHHHHHH-----------HhC-----C-CCCcccHH
Q 040643 522 YISGFSD----------D---------LSIGNALISLYARCGRIQEAYLVF-----------NKI-----D-AKDNISWN 565 (968)
Q Consensus 522 ~~~g~~~----------~---------~~~~~~Li~~y~k~g~~~~A~~~f-----------~~m-----~-~~d~~~~~ 565 (968)
.++.+.. | -..+..+..-..+..+.+--.+++ ++. + ..|+..-+
T Consensus 909 EKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS 988 (1666)
T KOG0985|consen 909 EKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVS 988 (1666)
T ss_pred cccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHH
Confidence 1211100 0 111112222222333333322332 111 1 12445556
Q ss_pred HHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHH-HH---------------------------HHHhhhhhHHHHH
Q 040643 566 GLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGS-VV---------------------------SAAANLANIKQGK 616 (968)
Q Consensus 566 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~-ll---------------------------~a~~~~~~~~~a~ 616 (968)
.-+.++...+-..+-++++++..-..-..+. ..+-. ++ ..+...+-.++|.
T Consensus 989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHH
Confidence 6678888888888888888887643211111 11111 11 1111122233333
Q ss_pred HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 617 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
.++.. +..+....+-||+ .-++++.|.+.-++..+| ..|..+..+-.+.|...+|++-|-+ .-|
T Consensus 1069 ~ifkk-----f~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------adD 1132 (1666)
T KOG0985|consen 1069 AIFKK-----FDMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ADD 1132 (1666)
T ss_pred HHHHH-----hcccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------cCC
Confidence 33322 2233333333333 446677777776666655 4699999999999999999998743 225
Q ss_pred hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 040643 697 HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACR 776 (968)
Q Consensus 697 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~ 776 (968)
+..|.-++.+++++|.+++-.+|+...+++ .-+|.++ +.++-+|++.+++.|-++++. -||..-......-|.
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf 1205 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCF 1205 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHh
Confidence 678999999999999999999999866554 6677765 678999999999999999884 477777778888899
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI 839 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 839 (968)
..|.++.|+.... +.+.|-.|+..+...|.+..|...-++...-.+-|+-+.+-|
T Consensus 1206 ~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCv 1260 (1666)
T KOG0985|consen 1206 EEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACV 1260 (1666)
T ss_pred hhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHh
Confidence 9999988877765 456788899999999999888775443333333333333333
No 38
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.34 E-value=8.1e-10 Score=123.94 Aligned_cols=356 Identities=15% Similarity=0.164 Sum_probs=226.9
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI 546 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 546 (968)
.+...-.|+.++|.+++.+.++. .+-....|.++-..+-..|+.+.+...+-.+...... |...|..+.+...+.|.+
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 33344448888888888888775 2345566777777788888777776665544444333 457778888888888888
Q ss_pred HHHHHHHHhCCCCCcccHHH---HHHHHHhcCChhhHHHHHHHhhhcCCcCCcch----HHHHHHHHhhhhhHHHHHHHH
Q 040643 547 QEAYLVFNKIDAKDNISWNG---LISGFAQSGYCEGALQVFSQMTQVGVQANLYT----FGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 547 ~~A~~~f~~m~~~d~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~a~~~~~~~~~a~~~~ 619 (968)
+.|+-.|.+..+.++.-|-. -+..|-+.|+...|+.-|.+|.+.....|..- .-.++..+...+.-+.|.+++
T Consensus 224 ~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 224 NQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 88888887766554444433 35667777888888888888776532112222 222333344444445555555
Q ss_pred HHHHH-hCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CC
Q 040643 620 AMIIK-TGYDSETEASNSLITLYAKCGSIDDAKREFLEMP----EKNEVSWNAMITGFSQHGYALEAINLFEKMKK--HD 692 (968)
Q Consensus 620 ~~~~~-~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g 692 (968)
..... .+-..+...++.++.+|.+...++.|......+. ++|..-|.+-= .++ .-+.-... .+
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~-----~~~-----~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDE-----RRR-----EEPNALCEVGKE 373 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhh-----hcc-----ccccccccCCCC
Confidence 44433 2223344555666666666666666655544333 23333331100 000 00000000 11
Q ss_pred CCCChHHHHHHHHHHc---ccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC---CCCCC
Q 040643 693 VMPNHVTFVGVLSACS---HVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGCLSRAREFTEQM---PIEPD 764 (968)
Q Consensus 693 ~~Pd~~t~~~ll~a~~---~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p~ 764 (968)
+.++-.. .-+..|. ..+...+++..|- .++...|. .+.|.-++++|-+.|++++|..++..+ |..-+
T Consensus 374 ~s~~l~v--~rl~icL~~L~~~e~~e~ll~~l---~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 374 LSYDLRV--IRLMICLVHLKERELLEALLHFL---VEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCccchh--HhHhhhhhcccccchHHHHHHHH---HHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 2233211 1122232 2333444444333 34454444 788999999999999999999999887 33445
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI 839 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 839 (968)
..+|--+...+...|..+.|....++++.+.|++..+-+.|+.+|...|+.++|.++...|-.-+-++.++|+|-
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~ 523 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE 523 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc
Confidence 889999999999999999999999999999999999999999999999999999999888766666666777774
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=3.4e-09 Score=110.74 Aligned_cols=209 Identities=17% Similarity=0.177 Sum_probs=160.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
|+.-.+.+-++.+++.... +...|--+..+|....+.++-.+.|+... ..|+.+|.--...+...+++++|+.=|+
T Consensus 340 g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 4555556666666654322 22224555566778888888888888765 2355566666666777788999999999
Q ss_pred HHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 687 KMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 687 ~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
+.+. +.|+. ..|.-+..+..+.+.++++...|+...+++ +-.++.|+-...+|.-.+++++|.+.++.. .++|+
T Consensus 419 Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 419 KAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988 78864 478888888888999999999999987763 333888999999999999999999999876 45554
Q ss_pred ---------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 765 ---------AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 765 ---------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+.+-.+++-.- -.+|+..|+...++++++||....+|..|+.+-...|+.++|.++.+.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEk 562 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEK 562 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 44545555433 448999999999999999999999999999999999999999997664
No 40
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.7e-09 Score=111.16 Aligned_cols=273 Identities=14% Similarity=0.162 Sum_probs=138.4
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChh--hHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 468 VGFVQHGMFGEALELFEEMENQGIQSDNI--GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 468 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
.-|.++|+++.|+++++-..+..-+.-+. +-.+.|.-.....++..+.+.-...+...-- +....+.-.+.-...|+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd 505 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGD 505 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCc
Confidence 34678899999998888876653222111 1112222222334445555544444322110 11111111111223567
Q ss_pred HHHHHHHHHhCCCCCcccHHHH---HHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 546 IQEAYLVFNKIDAKDNISWNGL---ISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 546 ~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
+++|.+.+.+....|...-.+| .-.+-..|+.++|++.|-++..- +.-+...+..+.+.|..+.+..+|.+++..+
T Consensus 506 ~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 506 LDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 7777777777666554433333 22345567777777777665321 1223334444555555555666665555444
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhc-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLE-MP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT 699 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~-~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 699 (968)
... ++.|+.+.+-|.+.|-+.|+-..|.+..-. .. .-|+.+..-|..-|.....+++|+..|++..- +.|+.+-
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~k 661 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSK 661 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHH
Confidence 332 345666666666666666666666654322 22 22443333355555555566666666666555 5666666
Q ss_pred HHHHHHHHc-ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcC
Q 040643 700 FVGVLSACS-HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAG 747 (968)
Q Consensus 700 ~~~ll~a~~-~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G 747 (968)
|..++..|. ++|.+.+|.++++...++ .+-+.+..--+|.+.+..|
T Consensus 662 wqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 662 WQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcccc
Confidence 655554443 456666666666555432 2333444444454444444
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.1e-10 Score=124.84 Aligned_cols=221 Identities=14% Similarity=0.129 Sum_probs=118.7
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhC-C-CCChhHHhHHhhHHHhcCCHH-HHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKTG-Y-DSETEASNSLITLYAKCGSID-DAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~-~~~~~~~~~li~~y~k~g~~~-~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
..-+-.+|..+++.++++.+|+.+.+.. . --+..+|++.+--+-+.=.+. -|..+.+.. .-.+.+|.++.++|..+
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-PNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-CCCcHHHHHhcchhhhh
Confidence 3344445555555555555555554421 1 113344444332221111111 122222222 22455666666666666
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH---HHHHhhcCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV---VDLLGRAGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l---v~~l~r~G~~~e 751 (968)
++.+.|++.|++.++ +.|+ ..+|+.+..-+.....+|.|..+|+.. +..+..||+++ +-.|.+.++++.
T Consensus 435 kdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A-----l~~~~rhYnAwYGlG~vy~Kqek~e~ 507 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA-----LGVDPRHYNAWYGLGTVYLKQEKLEF 507 (638)
T ss_pred hHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh-----hcCCchhhHHHHhhhhheeccchhhH
Confidence 666666666666666 5663 456666655566666666666666643 23444555543 345566666666
Q ss_pred HHHHHHhC-CCCCCHHHHH-HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 752 AREFTEQM-PIEPDAMVWR-TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 752 A~~~~~~m-~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|+-.|+++ .+.|...+.. .+...+...|..|.|....++++.++|.|+-.-+..+.++...+++++|....+.+|+
T Consensus 508 Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 508 AEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 66666665 5666533333 3333355566666666666666666666666666666666666666666666666654
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.2e-10 Score=124.66 Aligned_cols=273 Identities=15% Similarity=0.102 Sum_probs=207.3
Q ss_pred CHHHHHHHHHhCCCC--Ccc-cHHHHHHHHHhcCChhhHHHHHHHhhhcC-C-cCCcchHHHHHHHHhhhhhHHHHHHHH
Q 040643 545 RIQEAYLVFNKIDAK--DNI-SWNGLISGFAQSGYCEGALQVFSQMTQVG-V-QANLYTFGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 545 ~~~~A~~~f~~m~~~--d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~~~ll~a~~~~~~~~~a~~~~ 619 (968)
+..+|...|..++.. |+- ....+..+|...+++++|.++|+...+.. . .-+...|+++|--.-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467788888876543 333 33446778888889999999998887642 1 11345566655432211 111111
Q ss_pred -HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040643 620 -AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695 (968)
Q Consensus 620 -~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 695 (968)
..+++. -+..+.+|-++.+.|+-.++.+.|++.|++..+ | ...+|+-+..-+.....+++|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 122222 245688999999999999999999999999874 3 567888888888999999999999999887 888
Q ss_pred ChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHH
Q 040643 696 NHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTL 771 (968)
Q Consensus 696 d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~l 771 (968)
++. .|.++...|.+.+.++.|...|+... .|.|. .....++...+.+.|+.|+|+.+++++ .++|. +..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 754 89999999999999999999999764 78888 666777888999999999999999998 44443 2222223
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.......++.+.|....|.+.++-|+++..|.+|+.+|-..|+.+.|..-...|-+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 33355678899999999999999999999999999999999999999876555544
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.29 E-value=4.9e-10 Score=124.83 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=71.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++++|.+.+....+..-.| ...|.....+....|+.+.+.+.+..+.+................+...|+.+.|...
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477777776666544321111 1222222333455666666666666665543332222222335677778888888887
Q ss_pred HHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 553 FNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 553 f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
++++.+. +......+...|.+.|++++|++++..+.+.+..
T Consensus 176 l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~ 219 (398)
T PRK10747 176 VDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG 219 (398)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 7766533 4556667777888888888888888888776544
No 44
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=4.4e-06 Score=94.76 Aligned_cols=737 Identities=12% Similarity=0.112 Sum_probs=355.3
Q ss_pred HHHHhcCCChHHHHHHHHH----------HHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCC--CCccchHHHHH
Q 040643 17 LEGCLSYGSLLEAKKIHGK----------ILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSK--RTVFSWNKLIS 84 (968)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~----------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~ 84 (968)
+..|.+++-+..+..+|.+ ..+.|..||-. -+++..-+ -+.+.+.++...+.. +...-++.+..
T Consensus 475 L~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdym---flLq~l~r-~sPD~~~qFa~~l~Q~~~~~~die~I~D 550 (1666)
T KOG0985|consen 475 LSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYM---FLLQQLKR-SSPDQALQFAMMLVQDEEPLADIEQIVD 550 (1666)
T ss_pred HHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHH---HHHHHHHc-cChhHHHHHHHHhhccCCCcccHHHHHH
Confidence 4455555555555544442 23567777642 23333333 456666666655543 23344555666
Q ss_pred HHHhcCChhhHHHHHHHhHhCCCCCCcccHHH-HHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCC
Q 040643 85 GFVAKKLSGRVLGLFLQMIDDDVIPNEATFVG-VLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGF 163 (968)
Q Consensus 85 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~ 163 (968)
.+......+.+..++-.... +-.|+.....+ +|.-- +. .+.++-+.++.++.-.. +-+..+...+.+.|-
T Consensus 551 lFme~N~iQq~TSFLLdaLK-~~~Pd~g~LQTrLLE~N-----L~--~aPqVADAILgN~mFtH-yDra~IAqLCEKAGL 621 (1666)
T KOG0985|consen 551 LFMELNLIQQCTSFLLDALK-LNSPDEGHLQTRLLEMN-----LV--HAPQVADAILGNDMFTH-YDRAEIAQLCEKAGL 621 (1666)
T ss_pred HHHHHHhhhhhHHHHHHHhc-CCChhhhhHHHHHHHHH-----hc--cchHHHHHHHhcccccc-ccHHHHHHHHHhcch
Confidence 66666666666666555443 33444433322 22111 11 33444444443332211 226778888999999
Q ss_pred chHHHHHHhhCCC--CCeehHHHH-----HHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHH
Q 040643 164 IDSAKKVFNNLCF--KDSVSWVAM-----ISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQF 236 (968)
Q Consensus 164 ~~~A~~~f~~~~~--~~~~~~~~l-----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~ 236 (968)
...|++.+..+.. +.++ .+.+ +-+|.-.-.++++++.++.|...+++.|..+...+..-+...-..+...++
T Consensus 622 ~qraLehytDl~DIKR~vV-hth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~l 700 (1666)
T KOG0985|consen 622 LQRALEHYTDLYDIKRVVV-HTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIEL 700 (1666)
T ss_pred HHHHHHhcccHHHHHHHHH-HhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999988887632 1111 1111 234555667899999999999988887766655554444433222222333
Q ss_pred HHHHHH-----------hcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC-------------------C-----Ccc
Q 040643 237 HGLIFK-----------WGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ-------------------R-----DGV 281 (968)
Q Consensus 237 ~~~~~~-----------~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-------------------~-----~~~ 281 (968)
|+.... -++..|+.+.-..|.+-++.|++.+.+++-++-.- | |..
T Consensus 701 FE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf 780 (1666)
T KOG0985|consen 701 FESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRF 780 (1666)
T ss_pred HHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEeccc
Confidence 332211 13567777888889999999999998888654320 1 111
Q ss_pred cH-HH------------HHHHHHcCCChhHHHHHHHHhhccccC-----------CCcccHHHHHHHHhccCChHHHHHH
Q 040643 282 TY-NS------------LISGLAQCGYSDKALELFEKMQLDCLK-----------PDCVTVASLVSACASVGAFRTGEQL 337 (968)
Q Consensus 282 ~~-~~------------li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~a~~~~~~~~~a~~~ 337 (968)
-+ +- .|..|.+.=++...-.+...+...... -..+...-+..-+-+.++++.-...
T Consensus 781 ~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~ 860 (1666)
T KOG0985|consen 781 DFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPW 860 (1666)
T ss_pred ccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHH
Confidence 11 11 233333333322222222222111000 0011122233334445555555666
Q ss_pred HHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC
Q 040643 338 HSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTE----GLT 413 (968)
Q Consensus 338 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~ 413 (968)
++..+..| ..|..++|+|...|...++-.+ +.+.+ |..-=+..+.-||...++--|.-.+++=+-. ++-
T Consensus 861 LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE--~fLke----N~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vc 933 (1666)
T KOG0985|consen 861 LESLIQEG-SQDPATHNALAKIYIDSNNNPE--RFLKE----NPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVC 933 (1666)
T ss_pred HHHHHhcc-CcchHHHhhhhheeecCCCChH--Hhccc----CCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhc
Confidence 66666667 5677888888888876654322 11111 1111111122223222221111111100000 000
Q ss_pred CCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC------CCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 040643 414 PNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP------EDDVVSWTAMIVGFVQHGMFGEALELFEEME 487 (968)
Q Consensus 414 p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 487 (968)
-....|....+-+....+.+.=.++...- -..-+.+.++.. ..|+..-..-+.++...+-+.+-++++++..
T Consensus 934 NeNSlfK~~aRYlv~R~D~~LW~~VL~e~--n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv 1011 (1666)
T KOG0985|consen 934 NENSLFKSQARYLVERSDPDLWAKVLNEE--NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV 1011 (1666)
T ss_pred CchhHHHHHHHHHHhccChHHHHHHHhcc--ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 00011111111111111111111111100 011112222221 1355555667888899999999999999876
Q ss_pred hcCCC-CChhhHHHHH-HHhhcccchhhhhhhhHhhhhh-----------------------cCCCCchhhhhHHHHHHH
Q 040643 488 NQGIQ-SDNIGFSSAI-SACAGIQALNQGRQIHAQSYIS-----------------------GFSDDLSIGNALISLYAR 542 (968)
Q Consensus 488 ~~g~~-pd~~t~~~ll-~a~~~~~~~~~a~~i~~~~~~~-----------------------g~~~~~~~~~~Li~~y~k 542 (968)
-..-. .....+..++ -...+. +.....+....+-.- .+..+....+.|++ .
T Consensus 1012 L~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~ 1087 (1666)
T KOG0985|consen 1012 LDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---N 1087 (1666)
T ss_pred cCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---H
Confidence 43211 1111111111 111111 111111111111000 01111111111111 2
Q ss_pred cCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
-+.++.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|...|.-++.++.+.|.+++-..++.++
T Consensus 1088 i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred hhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2334444444443333 356999999999999999999877553 35667899999999999999999999988
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVG 702 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ 702 (968)
.+..-+|.+. +.||-+|+|.+++.+-++... -||+.-......-|...|.++.|.-+|... ..|.-
T Consensus 1160 Rkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~ 1225 (1666)
T KOG0985|consen 1160 RKKVREPYID--SELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAK 1225 (1666)
T ss_pred HHhhcCccch--HHHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHH
Confidence 8877666544 789999999999888766543 344444444445555555555544444321 12334
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNME 782 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 782 (968)
|.+.+.+.|.+..|...-++. -+..+|--+-.++...+.+.-|. +-...+--.+.-..-|+.-|...|-+|
T Consensus 1226 La~TLV~LgeyQ~AVD~aRKA-------ns~ktWK~VcfaCvd~~EFrlAQ--iCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1226 LASTLVYLGEYQGAVDAARKA-------NSTKTWKEVCFACVDKEEFRLAQ--ICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred HHHHHHHHHHHHHHHHHhhhc-------cchhHHHHHHHHHhchhhhhHHH--hcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 444444444444444333222 11223333333333333322221 001111112222334444455555555
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
+-....+..+.++--+-|.+.-|+-+|++
T Consensus 1297 ElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred HHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 55555555555555555556556555554
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.25 E-value=9.2e-10 Score=123.36 Aligned_cols=291 Identities=11% Similarity=0.007 Sum_probs=145.1
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhh-HHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDNIG-FSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEA 549 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 549 (968)
...|+++.|.+.+.+..+. .|+... +...-.+....|+.+.+.+.+..+.+....+...+.-.....+...|+.+.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 3568888888888776553 344322 2333344555667777777776665544333333334446666667777777
Q ss_pred HHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 040643 550 YLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626 (968)
Q Consensus 550 ~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 626 (968)
...++.+.+. +...+..+...|.+.|++++|.+++..+.+.++.+.......-..+. .+.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~--~~~--------------- 235 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAE--IGL--------------- 235 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHH---------------
Confidence 7777665432 44456666677777777777777777776665322211111111111 000
Q ss_pred CCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH---
Q 040643 627 YDSETEASNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF--- 700 (968)
Q Consensus 627 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~--- 700 (968)
++.-......+...+..+..+. +++..+..++..+...|+.++|.+++++..+ ..||....
T Consensus 236 -----------l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~~~ 302 (409)
T TIGR00540 236 -----------LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAISLP 302 (409)
T ss_pred -----------HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccchhH
Confidence 1000111112233333333331 2455555555555555555555555555555 34443321
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh---CCCCCCHHHHHHHHHHHHh
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ---MPIEPDAMVWRTLLSACRV 777 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~---m~~~p~~~~~~~ll~~~~~ 777 (968)
..........++.+++.+.++...+...-.|+.....++..++.+.|++++|.+.++. ....|+..++..|...+..
T Consensus 303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~ 382 (409)
T TIGR00540 303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ 382 (409)
T ss_pred HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence 1111122223555555555555443322222213344555555556666666665552 2345555555555555555
Q ss_pred cCChhHHHHHHHHHHc
Q 040643 778 HKNMEIGEYAANHLLE 793 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~ 793 (968)
.|+.+.|....++.++
T Consensus 383 ~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 383 AGDKAEAAAMRQDSLG 398 (409)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666555555443
No 46
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.23 E-value=1e-07 Score=99.25 Aligned_cols=481 Identities=12% Similarity=0.082 Sum_probs=319.0
Q ss_pred cCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHH
Q 040643 292 QCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYK 371 (968)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 371 (968)
..++...|..+|++.+... .-+...|.--+..=.+...+..|+.+++.++..-... ...|-..+-|=-..|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV-dqlWyKY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV-DQLWYKYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhcccHHHHH
Confidence 3455556666666665432 1122223333334445566666777776666552222 2334444555555667777777
Q ss_pred HHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHH
Q 040643 372 FFLTTE--TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQ 449 (968)
Q Consensus 372 ~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~ 449 (968)
+|++.. +|+...|++.|..=.+-...+.|..++++..
T Consensus 163 iferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV----------------------------------------- 201 (677)
T KOG1915|consen 163 IFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFV----------------------------------------- 201 (677)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh-----------------------------------------
Confidence 776643 4666667666666666666666666655543
Q ss_pred HHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhh----cccchhhhhhhhHhhhhhc
Q 040643 450 EILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA----GIQALNQGRQIHAQSYISG 525 (968)
Q Consensus 450 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~----~~~~~~~a~~i~~~~~~~g 525 (968)
+..|++.+|--....=.++|....|..+|....+. -.|...-..++.+++ .....+.++-++..++..-
T Consensus 202 -----~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~ 274 (677)
T KOG1915|consen 202 -----LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI 274 (677)
T ss_pred -----eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 23577888888888888999999999999987763 223333444444444 4566788888998888765
Q ss_pred CCCC-chhhhhHHHHHHHcCC---HHHHHHH-----HHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 526 FSDD-LSIGNALISLYARCGR---IQEAYLV-----FNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 526 ~~~~-~~~~~~Li~~y~k~g~---~~~A~~~-----f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
+... ..++..+...=-+.|+ ++++.-- ++.+... |-.+|--.+..--..|+.+...++|.+.... +.
T Consensus 275 pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vp 353 (677)
T KOG1915|consen 275 PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VP 353 (677)
T ss_pred CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CC
Confidence 4432 3444455544445565 4444322 2222233 5567877788778889999999999998864 55
Q ss_pred CCc-------chHH---HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH----hcCCHHHHHHHHhcCC-
Q 040643 594 ANL-------YTFG---SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA----KCGSIDDAKREFLEMP- 658 (968)
Q Consensus 594 p~~-------~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~f~~~~- 658 (968)
|-. ..|. ..+-.-....+.+..++++...++ -++...+++.-+--||+ ++-++..|.+++....
T Consensus 354 p~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG 432 (677)
T KOG1915|consen 354 PASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG 432 (677)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc
Confidence 532 1121 122222356789999999999988 35556777777777776 5789999999998876
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchH
Q 040643 659 -EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHY 736 (968)
Q Consensus 659 -~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y 736 (968)
-|-.-++...|..-.+.+.++....++++.++ ..| |..++......=...|+.|.|+.+|+-....-.+.-..-.+
T Consensus 433 ~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellw 510 (677)
T KOG1915|consen 433 KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLW 510 (677)
T ss_pred cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHH
Confidence 56677888888888999999999999999999 667 46678877777778899999999999887653333334456
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-----hcC-----------ChhHHHHHHHHHHcc----C
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACR-----VHK-----------NMEIGEYAANHLLEL----E 795 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~-----~~g-----------~~~~a~~~~~~~~~l----~ 795 (968)
-..||-=...|.+++|..++++. .-.+...+|-++..--. ..+ ++..|..+++++... +
T Consensus 511 kaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~ 590 (677)
T KOG1915|consen 511 KAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKEST 590 (677)
T ss_pred HHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcC
Confidence 66777778899999999999997 55566668988876533 233 456677777765543 4
Q ss_pred CCCc--chHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 796 PEDS--ATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 796 p~~~--~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|... ...-..-|+=...|.-.+...|.++|-
T Consensus 591 ~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP 623 (677)
T KOG1915|consen 591 PKEERLMLLEAWKNMEETFGTEGDVERVQSKMP 623 (677)
T ss_pred cHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence 4322 223334456677788888888888773
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=3.6e-09 Score=109.88 Aligned_cols=242 Identities=13% Similarity=0.170 Sum_probs=168.3
Q ss_pred hcCChhhHHHHHHHhhhcC-Cc-CCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 573 QSGYCEGALQVFSQMTQVG-VQ-ANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 573 ~~g~~~~A~~l~~~m~~~g-~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.+.++++|+.+|+++.++. .+ -|..||+.+|-.-.....+.---+....+ ..+ -+.+...+.+-|+-.++.++|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--dKy--R~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--DKY--RPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--ccC--CccceeeehhHHHHHHhHHHH
Confidence 3455666666666666552 11 13345555553322211111111111111 112 233445566778888888888
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 651 KREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 651 ~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
...|++.. ++-...|+.|..-|....+...|++-++..++ +.| |...|.+|..+|.-.++..=|+-+|++..
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~-- 425 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKAL-- 425 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHH--
Confidence 88888766 33456888888888888888889999988888 777 56788889999988888888888888664
Q ss_pred cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHc-------cCC
Q 040643 727 YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMP--IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLE-------LEP 796 (968)
Q Consensus 727 ~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------l~p 796 (968)
..+|+ ...+..|++.|.+.++++||.+-+++.- -..+..++..|...+...++.+.|....++-++ .+|
T Consensus 426 -~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 426 -ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred -hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 45665 7788888899999999999998888872 233457777888888888888888888888777 445
Q ss_pred CCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 797 EDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 797 ~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
+-..+-..|++-+.+.++|++|...-.
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYAT 531 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 555566778888889999999887544
No 48
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.9e-08 Score=106.10 Aligned_cols=248 Identities=14% Similarity=0.115 Sum_probs=175.2
Q ss_pred HHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHH
Q 040643 570 GFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDD 649 (968)
Q Consensus 570 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~ 649 (968)
-+-..+++.+.++++.+..+.. .++...+..=|..+..+|+-.+-..+-..+++. .+..+.+|-++.--|.-.|..++
T Consensus 253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se 330 (611)
T KOG1173|consen 253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE 330 (611)
T ss_pred HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence 3444455555555555554431 222222222233333444433333332223222 45567778888888888899999
Q ss_pred HHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 650 AKREFLEMPEK---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 650 A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|++.|.+...- =...|-.....|+-.|..++|+..+...-+ +.|- +..+..+..-|...+..+-|.++|.+.
T Consensus 331 ARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar--l~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A-- 406 (611)
T KOG1173|consen 331 ARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR--LMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQA-- 406 (611)
T ss_pred HHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH--hccCCcchHHHHHHHHHHhccHHHHHHHHHHH--
Confidence 99999886633 245899999999999999999998888877 5554 456677777888899999999999866
Q ss_pred hcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--C------CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 040643 726 EYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--P------IEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELE 795 (968)
Q Consensus 726 ~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~------~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 795 (968)
++|-|. +-.+.-+.-+....+.+.+|...++.. + -.+ -..+|..|..+||+.+..+.|...+++++.+.
T Consensus 407 -~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 407 -LAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred -HhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 477776 444444555556677888888777765 1 112 24567788888999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 796 PEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 796 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
|.++.+|..++-+|.-.|+.+.|.+...+
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999999999999999986553
No 49
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=3.4e-11 Score=89.35 Aligned_cols=50 Identities=28% Similarity=0.561 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH 709 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 709 (968)
||+++||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999974
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.21 E-value=8.6e-10 Score=114.08 Aligned_cols=196 Identities=13% Similarity=0.098 Sum_probs=165.1
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
....+..+...|.+.|++++|.+.|++.. +.+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALT--LNPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHH
Confidence 35567778889999999999999999765 33577888999999999999999999999998 4454 557778888
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
.+...|++++|.++|+...+..........+..+...+.+.|++++|.+.+++. ...|+ ...|..+...+...|+.+.
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 999999999999999998654222223556778899999999999999999887 44554 6678888888999999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
|....++++++.|.++..+..++.++...|++++|..+.+.+..
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998877654
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.19 E-value=1.2e-08 Score=114.42 Aligned_cols=275 Identities=11% Similarity=0.028 Sum_probs=172.6
Q ss_pred HcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc--hHHHHHHHHhhhhhHHHHH
Q 040643 542 RCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY--TFGSVVSAAANLANIKQGK 616 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~~~a~ 616 (968)
..|+++.|.+.+.+..+.. ...+-.....+.+.|+.++|.+.+.+..+. .|+.. .-..........|+.+.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 3455566655555443321 112222233444556666666666665443 23332 1222344455566666666
Q ss_pred HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 040643 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWN----AMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 617 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~----~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
..+..+.+.. +.+..+...+..+|...|++++|.+.+....+ .+...+. ....+....+..+++.+.+.++.
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~ 252 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW 252 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 6666666654 33555666777777777777777777766552 2222221 11122233344445556666666
Q ss_pred HCCCCC-----ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch---HHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 690 KHDVMP-----NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH---YACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 690 ~~g~~P-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~---y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
+. .| +...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+++.+.+++. .
T Consensus 253 ~~--~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 253 KN--QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HH--CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 63 34 5667888889999999999999999988654 455331 111222223457888888888776 3
Q ss_pred CCCC-H--HHHHHHHHHHHhcCChhHHHHHHH--HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 761 IEPD-A--MVWRTLLSACRVHKNMEIGEYAAN--HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 761 ~~p~-~--~~~~~ll~~~~~~g~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
..|+ + ....+|...|...|+++.|...++ ..++..|++.. +..|+.+|.+.|+.++|.++++.-
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444 3 667788888999999999999999 68888896654 669999999999999999987753
No 52
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.19 E-value=8.8e-11 Score=124.91 Aligned_cols=252 Identities=15% Similarity=0.180 Sum_probs=105.1
Q ss_pred hHHHHHHHcCCHHHHHHHHHh-CC----CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 535 ALISLYARCGRIQEAYLVFNK-ID----AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 535 ~Li~~y~k~g~~~~A~~~f~~-m~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
.+..++.+.|++++|.+++++ +. ..|..-|..+.......++.++|.+.++++...+.. +...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 456777788888888888843 22 224555666666666678888888888888765432 33344444444 577
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
++.++|..+.....+.. ++...+..++..|.+.|+++++.++++.+. +++...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 78888887776554432 455666778888888999999988888743 35778888899999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 040643 685 FEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIE 762 (968)
Q Consensus 685 ~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 762 (968)
|++.++ ..|| ......++..+...|+.+++.+.++...+.. +++...+..+..++...|+.++|...+++. ...
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 999998 7886 4567788889999999999888888886653 445667788899999999999999999887 445
Q ss_pred C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 040643 763 P-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 763 p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 794 (968)
| |+.+...+..+....|+.+.|..+.+++++.
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp TT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccc
Confidence 6 5677777888889999999999988887653
No 53
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1e-07 Score=99.31 Aligned_cols=116 Identities=14% Similarity=0.104 Sum_probs=58.0
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
...+...|.+-+..+++-. +.|-..|-.|..+|.-.+...-|.-.|++.. +.|...|.+|..+|.+.++.++|++.
T Consensus 376 EmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKC 454 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKC 454 (559)
T ss_pred HhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHH
Confidence 3333333333333333321 2344455555555555555555555555443 22555555555555555555555555
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 685 FEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 685 ~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|.+....| ..+...+..|...+-+.++.++|..+|+.-.+
T Consensus 455 ykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 455 YKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 55555543 22334555555555555555555555554433
No 54
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=7.6e-07 Score=97.19 Aligned_cols=525 Identities=17% Similarity=0.180 Sum_probs=281.8
Q ss_pred cCCchHHHHHHhhCC-CCCe-ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHH
Q 040643 161 NGFIDSAKKVFNNLC-FKDS-VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHG 238 (968)
Q Consensus 161 ~g~~~~A~~~f~~~~-~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 238 (968)
-|+++.|...++... .|+. ..|-.+...-...|+.--|...| +..|++..++.+|+
T Consensus 457 ~~df~ra~afles~~~~~da~amw~~laelale~~nl~iaercf----------------------aai~dvak~r~lhd 514 (1636)
T KOG3616|consen 457 DGDFDRATAFLESLEMGPDAEAMWIRLAELALEAGNLFIAERCF----------------------AAIGDVAKARFLHD 514 (1636)
T ss_pred cCchHHHHHHHHhhccCccHHHHHHHHHHHHHHhccchHHHHHH----------------------HHHHHHHHHHHHHH
Confidence 466677766666542 2332 24555554444444444443333 33345555555554
Q ss_pred HHH-------Hhc-CCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccc
Q 040643 239 LIF-------KWG-FSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDC 310 (968)
Q Consensus 239 ~~~-------~~g-~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 310 (968)
-.. +.| -..|.+-..+++.+..+ ++.+|..+|-+-. + -...|..|....++++|+.+-+.. |
T Consensus 515 ~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn--~---te~aigmy~~lhkwde~i~lae~~---~ 584 (1636)
T KOG3616|consen 515 ILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN--A---TEEAIGMYQELHKWDEAIALAEAK---G 584 (1636)
T ss_pred HHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc--c---HHHHHHHHHHHHhHHHHHHHHHhc---C
Confidence 322 112 23344445555555544 5677777774321 1 123455666667777777765432 1
Q ss_pred cCCCc-ccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh--CCCCCcchHHHH
Q 040643 311 LKPDC-VTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT--TETENVVLWNVM 387 (968)
Q Consensus 311 ~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~--~~~~~~~~~~~l 387 (968)
.|.- ..-.+.++++...|+-+.|-++- .+..-.-+-|..|.|.|.+-.|.+.-.. ....|......+
T Consensus 585 -~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~i 654 (1636)
T KOG3616|consen 585 -HPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHI 654 (1636)
T ss_pred -ChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHH
Confidence 1211 11234455555555555444331 1222234567889999988877665422 222344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeH-HHH
Q 040643 388 LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSW-TAM 466 (968)
Q Consensus 388 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~l 466 (968)
..++.+..-++.|=++|+++. +++.+.+.+..-.-+.+|.++-+-..+..++.. ..-
T Consensus 655 a~alik~elydkagdlfeki~----------------------d~dkale~fkkgdaf~kaielarfafp~evv~lee~w 712 (1636)
T KOG3616|consen 655 AAALIKGELYDKAGDLFEKIH----------------------DFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAW 712 (1636)
T ss_pred HHHHHhhHHHHhhhhHHHHhh----------------------CHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHH
Confidence 566666666666666666653 223333333333333333333322222222211 122
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI 546 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 546 (968)
-..+.+.|+++.|+..|-+... ....+.+......+..+..|.+-+...... ..-|..+.+-|+..|++
T Consensus 713 g~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~df 781 (1636)
T KOG3616|consen 713 GDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDF 781 (1636)
T ss_pred hHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhH
Confidence 3344555666666665544321 122333444445555555555544333211 12233455556666666
Q ss_pred HHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 040643 547 QEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626 (968)
Q Consensus 547 ~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 626 (968)
+.|.++|-+.. .++--|..|.++|+|++|.++-.+.. |
T Consensus 782 e~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~-------------------------------------~ 819 (1636)
T KOG3616|consen 782 EIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH-------------------------------------G 819 (1636)
T ss_pred HHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc-------------------------------------C
Confidence 66666654432 23444555666666666555543322 1
Q ss_pred CCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHH
Q 040643 627 YDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH--VTFVGVL 704 (968)
Q Consensus 627 ~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll 704 (968)
.+..+..|-+-..-+-+.|++.+|.+++-.+..|+. -|..|-++|..+..+++.++ ..||. .|...+.
T Consensus 820 ~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k-----~h~d~l~dt~~~f~ 889 (1636)
T KOG3616|consen 820 PEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEK-----HHGDHLHDTHKHFA 889 (1636)
T ss_pred chhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHH-----hChhhhhHHHHHHH
Confidence 122233333334445567888888888888877775 36778888888888887765 46664 4677777
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCC---CC-CHHHHHHHHHH------
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPI---EP-DAMVWRTLLSA------ 774 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~---~p-~~~~~~~ll~~------ 774 (968)
.-+...|++.+|...|-+.. -+-.-|.+|-.+|.+++|+.+-+.-+- +. -...|..-+++
T Consensus 890 ~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkl 959 (1636)
T KOG3616|consen 890 KELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKL 959 (1636)
T ss_pred HHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHH
Confidence 78888888888888876552 256678888888888888887765421 11 14445433332
Q ss_pred HHhcCChhHHHHHH------HHHHcc-----CCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 775 CRVHKNMEIGEYAA------NHLLEL-----EPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 775 ~~~~g~~~~a~~~~------~~~~~l-----~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
..+||-++.|...+ +-++++ ...-+..++.++--+...|++++|.+-.
T Consensus 960 lnk~gll~~~id~a~d~~afd~afdlari~~k~k~~~vhlk~a~~ledegk~edaskhy 1018 (1636)
T KOG3616|consen 960 LNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHY 1018 (1636)
T ss_pred HHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCccchhHHhhhhhhccchhhhhHhh
Confidence 23455554444321 222222 2345677888999999999999997743
No 55
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.17 E-value=2.5e-08 Score=111.17 Aligned_cols=270 Identities=11% Similarity=0.068 Sum_probs=149.2
Q ss_pred cCCHHHHHHHHHhCCCC--C-cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHH--HHHHHHhhhhhHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDAK--D-NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFG--SVVSAAANLANIKQGKQ 617 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~--d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~a~~ 617 (968)
.|+++.|++.....+.. + ...+-.......+.|+++.|...|.++.+. .|+..... .....+...|+.+.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666555544332 1 112221222234556666666666666543 34443222 12334455666666666
Q ss_pred HHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC---CH--------HHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 618 VHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK---NE--------VSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 618 ~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---d~--------~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+. +. ..|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 666665543 334556666666666667777666666655521 11 123333333333344444455555
Q ss_pred HHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHh--hcCChHHHHHHHHhC-CCCC
Q 040643 687 KMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLG--RAGCLSRAREFTEQM-PIEP 763 (968)
Q Consensus 687 ~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~--r~G~~~eA~~~~~~m-~~~p 763 (968)
+.-+. .+.+......+..++...|+.++|.+.++...+ ..|+.. ++.+++ ..|+.+++.+.+++. .-.|
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~----l~~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDER----LVLLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHH----HHHHHhhccCCChHHHHHHHHHHHhhCC
Confidence 54331 222445566666677777777777777765543 233332 222222 347777777777665 4455
Q ss_pred C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 764 D-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 764 ~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+ +....++...|...++++.|+..++++++++|++ ..|..|+.++.+.|+-++|.+.++.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~ 386 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRD 386 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 3445555556777777777888888888877754 4466778888888888877776553
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=8.9e-06 Score=88.51 Aligned_cols=537 Identities=16% Similarity=0.186 Sum_probs=278.9
Q ss_pred chHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHh-cCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHH
Q 040643 164 IDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHI-LGTVPTPYAISSALSACTKIELFEIGEQFHGLIFK 242 (968)
Q Consensus 164 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 242 (968)
++.+......||+ .|-.-+..+..+|+.-.....|++.+. ..+.-....|...++.....+-++.+..++...++
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk 166 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK 166 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 3455555666653 677777777778888777777777544 23334445666666666666666666666666554
Q ss_pred hcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHH
Q 040643 243 WGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLV 322 (968)
Q Consensus 243 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 322 (968)
. ++..-+--|..+++.+++++|.+.+......|... .+.|. .+...|.-+.
T Consensus 167 ~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~--------sk~gk-----------------Sn~qlw~elc 217 (835)
T KOG2047|consen 167 V----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFV--------SKKGK-----------------SNHQLWLELC 217 (835)
T ss_pred c----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhh--------hhccc-----------------chhhHHHHHH
Confidence 3 23335555666666777777776666655332211 01110 1111111111
Q ss_pred HHHhccCChHHHHHHHHHHHHhCC--CCC--hhhHhHHHHHHHhcCChhHHHHHHhhCCCC--CcchHHHHHHHHHhcCC
Q 040643 323 SACASVGAFRTGEQLHSYAIKVGI--SKD--IIVEGSMLDLYVKCSDVETAYKFFLTTETE--NVVLWNVMLVAYGQLND 396 (968)
Q Consensus 323 ~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~ 396 (968)
...++..+.-...+ .+.+++.|+ -+| -+.|++|.+.|.+.|.++.|+.+|++.... .+.-++.+..+|++-..
T Consensus 218 dlis~~p~~~~sln-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE 296 (835)
T KOG2047|consen 218 DLISQNPDKVQSLN-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEE 296 (835)
T ss_pred HHHHhCcchhcccC-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHH
Confidence 11111111111111 112222332 223 367889999999999999999998775432 23335555555554322
Q ss_pred HHHHHHHHHHHH--hcCCCCCccchhhhhhhhccCCchhhhHHHHHhh--CChHHHHHHHhhCCCCCceeHHHHHHHHHh
Q 040643 397 LSESFQIFKQMQ--TEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL--GNLNTAQEILRRLPEDDVVSWTAMIVGFVQ 472 (968)
Q Consensus 397 ~~~A~~l~~~m~--~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 472 (968)
..-+..+ ++. +.|-.-+...+..-+ .-++.+ +..-..-.+.-+-.+.++..|..-+.. .
T Consensus 297 ~~~~~~m--e~a~~~~~n~ed~~dl~~~~-------------a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~ 359 (835)
T KOG2047|consen 297 SCVAAKM--ELADEESGNEEDDVDLELHM-------------ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--Y 359 (835)
T ss_pred HHHHHHH--hhhhhcccChhhhhhHHHHH-------------HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--h
Confidence 1111111 010 001111111111100 000000 011111112222223344555544433 3
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++.+-...|.+..+. +.|-.. ...-...|..+.+.|-..|+++.|+.+
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka-----------------------------~Gs~~~Lw~~faklYe~~~~l~~aRvi 409 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKA-----------------------------VGSPGTLWVEFAKLYENNGDLDDARVI 409 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccC-----------------------------CCChhhHHHHHHHHHHhcCcHHHHHHH
Confidence 45666666677666553 333211 001123455667777777777777777
Q ss_pred HHhCCCCCcc-------cHHHHHHHHHhcCChhhHHHHHHHhhhcCCc----------C-------CcchHHHHHHHHhh
Q 040643 553 FNKIDAKDNI-------SWNGLISGFAQSGYCEGALQVFSQMTQVGVQ----------A-------NLYTFGSVVSAAAN 608 (968)
Q Consensus 553 f~~m~~~d~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p-------~~~t~~~ll~a~~~ 608 (968)
|++...-+-. .|-.-...=.++.+++.|+++.+.....--. | +...++..++---.
T Consensus 410 feka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs 489 (835)
T KOG2047|consen 410 FEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEES 489 (835)
T ss_pred HHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHH
Confidence 7766543322 2333333444556667777766554321111 1 11223344444455
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHH-HHHHHHHHHHhc---CCHHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP----EKNEV-SWNAMITGFSQH---GYALE 680 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~-~~~~li~~~~~~---g~~~~ 680 (968)
.|-++..+.+++.+++..+.....+-| ..-.+-...-+++|.+++++-. -|++. .||+.+.-+.+. -..+.
T Consensus 490 ~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 490 LGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred hccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 677888888888888866543222222 1112344556889999999755 45654 788877766542 27899
Q ss_pred HHHHHHHHHHCCCCCChHHHHHHHHHHc--ccCcHHHHHHHHHHhhh--------------------hcCCCCCcchHHH
Q 040643 681 AINLFEKMKKHDVMPNHVTFVGVLSACS--HVGLVNEGLRYFESMST--------------------EYGLVPKPEHYAC 738 (968)
Q Consensus 681 A~~l~~~m~~~g~~Pd~~t~~~ll~a~~--~~g~~~~a~~~~~~m~~--------------------~~~i~p~~~~y~~ 738 (968)
|..+|++.++ |.+|...-+..|+.|-. .-|+...|..+++.... .||+.-+.+.|.-
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYek 647 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEK 647 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHH
Confidence 9999999999 78888765555555422 34777777777765532 2455544444432
Q ss_pred H----------------HHHHhhcCChHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCChhH
Q 040643 739 V----------------VDLLGRAGCLSRAREFTEQM--PIEP--DAMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 739 l----------------v~~l~r~G~~~eA~~~~~~m--~~~p--~~~~~~~ll~~~~~~g~~~~ 783 (968)
- .++=.+.|..+.|..++.-. -..| +...|.+.=.--..|||-+-
T Consensus 648 aIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 648 AIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred HHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 1 23334566777777666544 1223 36667666666667777433
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.12 E-value=1.1e-10 Score=86.67 Aligned_cols=50 Identities=30% Similarity=0.494 Sum_probs=48.0
Q ss_pred CCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcc
Q 040643 177 KDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTK 226 (968)
Q Consensus 177 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 226 (968)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
No 58
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=2.4e-06 Score=89.34 Aligned_cols=414 Identities=11% Similarity=0.101 Sum_probs=197.6
Q ss_pred cCCchHHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHH
Q 040643 161 NGFIDSAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFH 237 (968)
Q Consensus 161 ~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 237 (968)
.+++..|+.+|+.. ..++...|---+..=.++.....|..++++....=...|.. |-..+..=-..|++..|+++|
T Consensus 86 q~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdql-WyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQL-WYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHH-HHHHHHHHHHhcccHHHHHHH
Confidence 35667778888765 34556667666777777777777877777765421111111 111111112234455555555
Q ss_pred HHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC--CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCc
Q 040643 238 GLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ--QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDC 315 (968)
Q Consensus 238 ~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 315 (968)
..-.+ .+||...|++.|++-.+...++.|+.++++.. +|++.+|---.+---++|+..-|..+|..
T Consensus 165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer---------- 232 (677)
T KOG1915|consen 165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER---------- 232 (677)
T ss_pred HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH----------
Confidence 54433 24555555555555555555555555555432 45555554444444445555555544444
Q ss_pred ccHHHHHHHHhccCChHHHHHHHHHHHHh-CC-CCChhhHhHHHHHHHhcCChhHHHHHHh----hCCCCC-cchHHHHH
Q 040643 316 VTVASLVSACASVGAFRTGEQLHSYAIKV-GI-SKDIIVEGSMLDLYVKCSDVETAYKFFL----TTETEN-VVLWNVML 388 (968)
Q Consensus 316 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~~~~~~-~~~~~~li 388 (968)
+++. |- ..+..++++....=.++..++.|+-+|. .+|... ...|....
T Consensus 233 -------------------------Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~ 287 (677)
T KOG1915|consen 233 -------------------------AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYT 287 (677)
T ss_pred -------------------------HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 4332 10 1112233344444444555555555553 233221 22232222
Q ss_pred HHHHhcCCHH---HHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhC---CCCCcee
Q 040643 389 VAYGQLNDLS---ESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRL---PEDDVVS 462 (968)
Q Consensus 389 ~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~ 462 (968)
.-=-+.|+.. +++--=++++ ++.. .+-|-.+
T Consensus 288 ~fEKqfGd~~gIEd~Iv~KRk~q-------------------------------------------YE~~v~~np~nYDs 324 (677)
T KOG1915|consen 288 AFEKQFGDKEGIEDAIVGKRKFQ-------------------------------------------YEKEVSKNPYNYDS 324 (677)
T ss_pred HHHHHhcchhhhHHHHhhhhhhH-------------------------------------------HHHHHHhCCCCchH
Confidence 2222333322 2221111111 0111 1224456
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCh-------hhHHH---HHHHhhcccchhhhhhhhHhhhhhcCCCCchh
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDN-------IGFSS---AISACAGIQALNQGRQIHAQSYISGFSDDLSI 532 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~---ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 532 (968)
|-..+..--..|+.+...++|++.+.. ++|-. +.|.- .+-.-....+.+.+++++...++ -++...++
T Consensus 325 WfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPHkkFt 402 (677)
T KOG1915|consen 325 WFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPHKKFT 402 (677)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCcccch
Confidence 666777777778888888888887764 44422 11111 11112345666777777777666 33444555
Q ss_pred hhhHHHHHH----HcCCHHHHHHHHHhCCC--CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 040643 533 GNALISLYA----RCGRIQEAYLVFNKIDA--KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 533 ~~~Li~~y~----k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 606 (968)
+..+--||+ ++-++..|++++..... |..-.+-.-|..=.+.++++..-.++.+.+.-+ .-|..++.-....-
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHH
Confidence 555555554 44566666666554331 223334444444444555555555555554432 12334444443334
Q ss_pred hhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC
Q 040643 607 ANLANIKQGKQVHAMIIKT-GYDSETEASNSLITLYAKCGSIDDAKREFLEMP 658 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 658 (968)
..+|+.+.++.++..++.. .++....++.+.|+.=..+|.++.|..+++++.
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL 534 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL 534 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence 4455555555555555442 122233344455555555555555555555544
No 59
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.11 E-value=1.3e-06 Score=95.32 Aligned_cols=481 Identities=16% Similarity=0.175 Sum_probs=254.1
Q ss_pred CCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhhHHHHH
Q 040643 59 GDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGL 138 (968)
Q Consensus 59 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~~i~~~ 138 (968)
.++.+|..+|-+-... ...|..|....+|++++.+-+.. |...-...-.+.++++...|.-. .+-.+
T Consensus 545 kkfk~ae~ifleqn~t-----e~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~--ka~el--- 611 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQNAT-----EEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDE--KAAEL--- 611 (1636)
T ss_pred hhhhHHHHHHHhcccH-----HHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchh--hhhhh---
Confidence 4788888888654322 24566677777888888765432 22111122234456665555433 11111
Q ss_pred HHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhh--CCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhh
Q 040643 139 IISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNN--LCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYA 216 (968)
Q Consensus 139 ~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 216 (968)
..+.--.-+-|..|.|.|.+..|.+.-.. ....|.....-+..++.+..-++.|=++|+++..
T Consensus 612 ------k~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d--------- 676 (1636)
T KOG3616|consen 612 ------KESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD--------- 676 (1636)
T ss_pred ------ccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------
Confidence 11111224567789999998887776422 2223433444455566666667777777776542
Q ss_pred HHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhH-HHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCC
Q 040643 217 ISSALSACTKIELFEIGEQFHGLIFKWGFSSETFV-CNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGY 295 (968)
Q Consensus 217 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~ 295 (968)
+-..+..+.+-..+..|.++-... ++..+.. -..--.-+...|+++.|..-|-+.. ..-..|.+-.....
T Consensus 677 ~dkale~fkkgdaf~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~ake 747 (1636)
T KOG3616|consen 677 FDKALECFKKGDAFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKE 747 (1636)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhh
Confidence 122233333322333333332211 1111111 0111122334466666666654421 12223455566778
Q ss_pred hhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh
Q 040643 296 SDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT 375 (968)
Q Consensus 296 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 375 (968)
+.+|+.+++.++.... -.--|..+..-|++.|+++.|+++|-.. ..++.-|+||.+.|++++|.++-.+
T Consensus 748 w~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e 816 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEE 816 (1636)
T ss_pred hhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHH
Confidence 8888888887765432 2234677778888888988888887532 2345678899999999999988888
Q ss_pred CCCCC--cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh
Q 040643 376 TETEN--VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR 453 (968)
Q Consensus 376 ~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 453 (968)
...|. .++|-+-..-+-+.|++.+|.++|-. .|.++.+.++
T Consensus 817 ~~~~e~t~~~yiakaedldehgkf~eaeqlyit----------------------i~~p~~aiqm--------------- 859 (1636)
T KOG3616|consen 817 CHGPEATISLYIAKAEDLDEHGKFAEAEQLYIT----------------------IGEPDKAIQM--------------- 859 (1636)
T ss_pred hcCchhHHHHHHHhHHhHHhhcchhhhhheeEE----------------------ccCchHHHHH---------------
Confidence 76653 34455555555666666666665322 2233333333
Q ss_pred hCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 454 RLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 454 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
|-+.|..+..+++..+-.-.-+. .|-..+-.-+...|++..+++-+-.. .-+
T Consensus 860 ----------------ydk~~~~ddmirlv~k~h~d~l~---dt~~~f~~e~e~~g~lkaae~~flea---------~d~ 911 (1636)
T KOG3616|consen 860 ----------------YDKHGLDDDMIRLVEKHHGDHLH---DTHKHFAKELEAEGDLKAAEEHFLEA---------GDF 911 (1636)
T ss_pred ----------------HHhhCcchHHHHHHHHhChhhhh---HHHHHHHHHHHhccChhHHHHHHHhh---------hhH
Confidence 34445555555544443211111 12222223333345555544433221 124
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
.+-++||...+.+++|.++-..--..|..-- ..-.++++=-.+.|.+++++. |+ +...+.-.+..+.++
T Consensus 912 kaavnmyk~s~lw~dayriaktegg~n~~k~--v~flwaksiggdaavkllnk~---gl------l~~~id~a~d~~afd 980 (1636)
T KOG3616|consen 912 KAAVNMYKASELWEDAYRIAKTEGGANAEKH--VAFLWAKSIGGDAAVKLLNKH---GL------LEAAIDFAADNCAFD 980 (1636)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccccccHHHH--HHHHHHHhhCcHHHHHHHHhh---hh------HHHHhhhhhcccchh
Confidence 6788999999999999988765433332111 111223333346667766652 10 112223344556666
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH--HHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNE--VSWN 666 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~--~~~~ 666 (968)
.|..+-....+... +.+ .-.+.-.+-..|++++|.+-+-+..+-|. ++|.
T Consensus 981 ~afdlari~~k~k~-~~v--hlk~a~~ledegk~edaskhyveaiklntynitwc 1032 (1636)
T KOG3616|consen 981 FAFDLARIAAKDKM-GEV--HLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWC 1032 (1636)
T ss_pred hHHHHHHHhhhccC-ccc--hhHHhhhhhhccchhhhhHhhHHHhhcccccchhh
Confidence 66666655555432 222 22333445678999999877766654332 4554
No 60
>PRK12370 invasion protein regulator; Provisional
Probab=99.06 E-value=1.8e-08 Score=117.44 Aligned_cols=241 Identities=14% Similarity=0.085 Sum_probs=176.2
Q ss_pred hhhHHHHHHHhhhcCCcCCcch-HHHHHHHHh---------hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC
Q 040643 577 CEGALQVFSQMTQVGVQANLYT-FGSVVSAAA---------NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS 646 (968)
Q Consensus 577 ~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~---------~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 646 (968)
.++|+.+|++..+. .|+... +..+..++. ..++.++|...+..+++.. +.+...+..+..++...|+
T Consensus 277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 45677777776643 454432 222222222 2244778888888887754 4467778888889999999
Q ss_pred HHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHH
Q 040643 647 IDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 647 ~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
+++|...|++.. .| +...|..+...+...|++++|+..|++.++ +.|+.. .+..++.++...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999876 44 567899999999999999999999999999 778754 334445556678999999999998
Q ss_pred hhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 723 MSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLL-SACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 723 m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
..+. ..|+ +..+..+..+|...|++++|.+.++++ +..|+......++ ..+...| +.+....+++++..-..+
T Consensus 432 ~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 7543 1354 555777889999999999999999987 6677754444444 4456666 478888888887655555
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.....+..+|+-.|+-+.+..+ +.+++
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 5555589999999999988888 44544
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=1.3e-07 Score=94.13 Aligned_cols=311 Identities=14% Similarity=0.151 Sum_probs=168.2
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCCh-hhHHHHHHHhhcccchhhhhhhhHhhhhhc-CCCC--chhhhhHHHHHHHcCCH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDN-IGFSSAISACAGIQALNQGRQIHAQSYISG-FSDD--LSIGNALISLYARCGRI 546 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~--~~~~~~Li~~y~k~g~~ 546 (968)
.-++++++|.++|-+|.+. .|.. .+-.++-+.+-+.|..+.|..+|.-+.++. +..+ ....-.|..=|.+.|-+
T Consensus 46 LLs~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HhhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999873 2221 122233344445555555555555544431 1111 11222333444444555
Q ss_pred HHHHHHHHhCCCCCcc---cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 547 QEAYLVFNKIDAKDNI---SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 547 ~~A~~~f~~m~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+.|+.+|..+.+.+.. +...|+..|-+..+|++|++.-+++.+.+-++..+-+
T Consensus 124 DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI------------------------ 179 (389)
T COG2956 124 DRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI------------------------ 179 (389)
T ss_pred hHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH------------------------
Confidence 5555555444432222 2233444444444444444444444433322222111
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--H
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH--V 698 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~ 698 (968)
...|--|...+.-..+++.|..++.+..+ | .+..--.+...+...|++++|++.++...+ -.|+. .
T Consensus 180 -------AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e--Qn~~yl~e 250 (389)
T COG2956 180 -------AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLE--QNPEYLSE 250 (389)
T ss_pred -------HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHH--hChHHHHH
Confidence 11223344444455667777777776652 2 333333455667788888888888888887 45664 3
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHh
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFT-EQMPIEPDAMVWRTLLSACRV 777 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~-~~m~~~p~~~~~~~ll~~~~~ 777 (968)
+...|..+|.+.|+.+++..++..+.+. .|..+.-..|.++.....-.++|...+ +...-+|+......|+..-..
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~ 327 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA 327 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc
Confidence 5667777888888888888888877544 444444444545444333344444433 333445665544444432111
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEec
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFV 850 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~ 850 (968)
=++.|+|.+...+.+.|....++..|-+.--.-+=+.|+|.-
T Consensus 328 -------------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~W 369 (389)
T COG2956 328 -------------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLYW 369 (389)
T ss_pred -------------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeeee
Confidence 123466777777777777777888887766666666676653
No 62
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.6e-06 Score=89.13 Aligned_cols=399 Identities=13% Similarity=0.065 Sum_probs=255.5
Q ss_pred HHHHHHHHHHHHh---cCCCCCccchhhhhhhhccCCchhhh---HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHH-H
Q 040643 397 LSESFQIFKQMQT---EGLTPNQYTYPTILRTCTSLGALSLG---EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIV-G 469 (968)
Q Consensus 397 ~~~A~~l~~~m~~---~g~~p~~~t~~~ll~a~~~~~~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~-~ 469 (968)
+..|.+-|..... ....|...+..++=...+..++.+.. .+.+..+++-..|.......++.-...-+.|+. -
T Consensus 59 yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~ 138 (564)
T KOG1174|consen 59 YRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLAR 138 (564)
T ss_pred HHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHH
Confidence 3444444444332 23556666666666666666655443 355667788889998888887654444444443 3
Q ss_pred HHhcC-Ch-hH-------------HHHHHHHHHhcCCC---------------CChhhHHHHHHHhhc--ccchhhhhhh
Q 040643 470 FVQHG-MF-GE-------------ALELFEEMENQGIQ---------------SDNIGFSSAISACAG--IQALNQGRQI 517 (968)
Q Consensus 470 ~~~~g-~~-~~-------------A~~l~~~m~~~g~~---------------pd~~t~~~ll~a~~~--~~~~~~a~~i 517 (968)
+-+.| +- ++ |++.+.-..+.++. |...+...-+.+++. .++-..+.+.
T Consensus 139 l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t 218 (564)
T KOG1174|consen 139 LQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQT 218 (564)
T ss_pred HHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhH
Confidence 33332 21 11 22222222222222 222333333333332 2222233333
Q ss_pred hHhh-hhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHH---HHHHHhcCChhhHHHHHHHhhhcCCc
Q 040643 518 HAQS-YISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGL---ISGFAQSGYCEGALQVFSQMTQVGVQ 593 (968)
Q Consensus 518 ~~~~-~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~ 593 (968)
+-.+ ...-++.|+....++.+.|...|+.++|...|++...-|+.+..+| .--+.+.|+.+....+...+....-
T Consensus 219 ~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~- 297 (564)
T KOG1174|consen 219 FLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK- 297 (564)
T ss_pred HHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-
Confidence 3333 3345677889999999999999999999999998876666555444 3345677888888877777654321
Q ss_pred CCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHH
Q 040643 594 ANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMIT 670 (968)
Q Consensus 594 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~ 670 (968)
-...-+..-+...-...+.+.|..+-+..++.. +.++..+-.-...+...|+.++|.-.|.... .| +..+|.-++.
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~h 376 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFH 376 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 111111111222234455666666655555532 1223333333356667899999999998755 44 7889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHH-HHHcc-cCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVL-SACSH-VGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA 746 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~ 746 (968)
.|...|...+|.-+-....+ .-|+. .|...+. ..|.- .-.-++|.+++++- ..+.|+ ......+..++.+-
T Consensus 377 sYLA~~~~kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~---L~~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 377 SYLAQKRFKEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS---LKINPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHhhchHHHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhh---hccCCccHHHHHHHHHHHHhh
Confidence 99999999999998888776 45554 4444442 23332 33458888888855 366888 66677788999999
Q ss_pred CChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 747 GCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 747 G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
|+.+++..++++. ...||....+.|....+..+.++.|..-+.+++.++|+|-.+.
T Consensus 452 g~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred CccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 9999999999987 7889999999999999999999999999999999999886443
No 63
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.00 E-value=3.7e-08 Score=108.99 Aligned_cols=229 Identities=16% Similarity=0.217 Sum_probs=169.4
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHh-----CC-CCCh-hHHhHHhhHHHhcCCHHHHHHHHhcCCC----------
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKT-----GY-DSET-EASNSLITLYAKCGSIDDAKREFLEMPE---------- 659 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g~-~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~---------- 659 (968)
.|+..+...|...|+++.|.+.++..++. |. .|.+ ...+.+..+|...+++++|..+|+++..
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45556777888888888888888776653 21 1222 2334567788999999999999887651
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC
Q 040643 660 KN-EVSWNAMITGFSQHGYALEAINLFEKMKK-----HDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP 731 (968)
Q Consensus 660 ~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 731 (968)
|. ..+++.|...|...|++++|...+++..+ .|..+..+ -+..+...|.+.+.+++|..++....+.+.-.|
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 22 34788888899999999998888777654 23333332 467777789999999999999998766665333
Q ss_pred C------cchHHHHHHHHhhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 040643 732 K------PEHYACVVDLLGRAGCLSRAREFTEQM---------PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL- 794 (968)
Q Consensus 732 ~------~~~y~~lv~~l~r~G~~~eA~~~~~~m---------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 794 (968)
. ..+|+.|..+|...|+++||++++++. ...+. ....+.|..+|...++.+.|...++..+.+
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3 456999999999999999999999986 12333 556667888898888888888777765554
Q ss_pred ---CCCC---cchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 795 ---EPED---SATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 795 ---~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.|++ ..+|-.|+-+|...|++++|.++-...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4555 456777888999999999999976554
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.98 E-value=2.2e-05 Score=87.63 Aligned_cols=421 Identities=12% Similarity=0.095 Sum_probs=237.6
Q ss_pred CCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhh
Q 040643 345 GISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPT 421 (968)
Q Consensus 345 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 421 (968)
.+..|..+|..|.-....+|+++.+.+.|++... .....|+.+-..|...|.-..|..+++.-....-.|+..+--.
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 3567888999999999999999999999998653 2456799999999999999999999887665543444433322
Q ss_pred hh-hhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhc------CCCCC
Q 040643 422 IL-RTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQ------GIQSD 494 (968)
Q Consensus 422 ll-~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~pd 494 (968)
+. +.|.. +.+..++++++-.+.... .+.|-
T Consensus 398 masklc~e-------------------------------------------~l~~~eegldYA~kai~~~~~~~~~l~~~ 434 (799)
T KOG4162|consen 398 MASKLCIE-------------------------------------------RLKLVEEGLDYAQKAISLLGGQRSHLKPR 434 (799)
T ss_pred HHHHHHHh-------------------------------------------chhhhhhHHHHHHHHHHHhhhhhhhhhhh
Confidence 22 22221 112223333333322220 11121
Q ss_pred hhhHHHHHHHh--hccc-------chhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhC----CCCCc
Q 040643 495 NIGFSSAISAC--AGIQ-------ALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKI----DAKDN 561 (968)
Q Consensus 495 ~~t~~~ll~a~--~~~~-------~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m----~~~d~ 561 (968)
..-+..+--.. .... ...++.+.++..++.+.. |+.+.--+.--|+..++++.|.....+. ...+.
T Consensus 435 ~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~ 513 (799)
T KOG4162|consen 435 GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSA 513 (799)
T ss_pred HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccH
Confidence 11111111000 0011 112344444455444433 2222223444577778888887666543 33467
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC-cchHHHHHHHHhhhhhHHHHHHHHHHHHHhC-CCCChhHHhHHhh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN-LYTFGSVVSAAANLANIKQGKQVHAMIIKTG-YDSETEASNSLIT 639 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~li~ 639 (968)
..|.-+.-.+...+++.+|+.+.+....+ -|+ ......=+..-...++.+++......+...- -.+.
T Consensus 514 ~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~--------- 582 (799)
T KOG4162|consen 514 KAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYG--------- 582 (799)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhh---------
Confidence 78888888888888888888887765543 111 1000000111111333333333332222210 0000
Q ss_pred HHHhcCCHHHHHHHHhcCC----C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH--------HHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMP----E-KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV--------TFVGVLSA 706 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~----~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--------t~~~ll~a 706 (968)
....|+-....+.+..+. + .|.++-..-+.+... -+.+.+..-.. |...-+.|+.. .+......
T Consensus 583 -~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a-~~~~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~ 659 (799)
T KOG4162|consen 583 -VQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVA-SQLKSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADL 659 (799)
T ss_pred -HhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHH-hhhhhcccccc-cCcccccCCCCchHHHHHHHHHHHHHH
Confidence 001111222333333332 1 122211111222221 11111110000 22222333321 23344556
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
+...+..++|+..+.+.. ++.|. ...|.--.+.+...|+++||.+.+... .+.|+ ..+..+|...+...|+..+
T Consensus 660 ~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~l 736 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRL 736 (799)
T ss_pred HHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcch
Confidence 788888899987777553 55555 555666678889999999999877665 78888 6667777777888999989
Q ss_pred HHH--HHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 784 GEY--AANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 784 a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|+. +...+++++|.|+.+|..|+.+.-+.|+.++|.+-...--
T Consensus 737 a~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 737 AEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 988 9999999999999999999999999999999999766553
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.95 E-value=5.5e-07 Score=92.87 Aligned_cols=277 Identities=14% Similarity=0.125 Sum_probs=185.4
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLV 552 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 552 (968)
.|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+-.....+.+..-.++..+.-+........|+.+.|+.-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 589999999998877765444 3456666677888899999999999988886677788888888889999999999877
Q ss_pred HHh---CCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-------chHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 553 FNK---IDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-------YTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 553 f~~---m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
.++ |..+++.........|.+.|++.+.+.+..+|.+.|+--|+ .++..++.-+...+..+.-+..++..
T Consensus 176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 765 45567888888999999999999999999999998865554 45666666555555554444444433
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK--NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVT 699 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t 699 (968)
-+. ...++.+..+++.-+..||+.++|.++..+..++ |.. -...-.+.+-++.+.-++..++-.+ -.|+ +-.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~--~h~~~p~L 330 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLK--QHPEDPLL 330 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHH--hCCCChhH
Confidence 221 2345555566666677777777777666554421 222 1122334455566655555555554 2332 345
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+..|...|.+.+.+.+|.++|+... ...|+..+|+-+.+.|.+.|+.++|.+..++
T Consensus 331 ~~tLG~L~~k~~~w~kA~~~leaAl---~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 331 LSTLGRLALKNKLWGKASEALEAAL---KLRPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH---hcCCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 5566666666666666666666443 3466666666666666666666666665554
No 66
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.3e-07 Score=95.23 Aligned_cols=218 Identities=15% Similarity=0.116 Sum_probs=119.0
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHH
Q 040643 529 DLSIGNALISLYARCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA 605 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 605 (968)
...+|-++.--|.-.|+..+|++.|.+...-| ...|-.....|+-.|..|.|+..+...-+.= .-...-+..+---
T Consensus 311 ~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgme 389 (611)
T KOG1173|consen 311 KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGME 389 (611)
T ss_pred CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHH
Confidence 45556667777777788888888887655433 3478888888988899998888776654320 1111112222233
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 606 AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
|.+.++++.|.+++..+.... +.|+.+.+-+.-++-+.+.+.+|...|+...++ .
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~------------------------i 444 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV------------------------I 444 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH------------------------h
Confidence 555666677777666665432 445666666666566666666666666543310 0
Q ss_pred HHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC
Q 040643 686 EKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP 763 (968)
Q Consensus 686 ~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p 763 (968)
+.... -+| -..|++.|..+|.+.+.+++|+.+|+..... .+-+..+|+.++-+|.-.|+++.|.+.+.+. .+.|
T Consensus 445 k~~~~--e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 445 KSVLN--EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hhccc--cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 00000 001 1123444445555555555555555543321 1222455555555555555555555555554 5566
Q ss_pred CHHHHHHHHHHHH
Q 040643 764 DAMVWRTLLSACR 776 (968)
Q Consensus 764 ~~~~~~~ll~~~~ 776 (968)
|..+-..+|+.+.
T Consensus 521 ~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 521 DNIFISELLKLAI 533 (611)
T ss_pred ccHHHHHHHHHHH
Confidence 6655566665543
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.95 E-value=5.9e-08 Score=103.37 Aligned_cols=208 Identities=15% Similarity=0.096 Sum_probs=150.3
Q ss_pred hHHHHHHHHHHHHHh-CCCCC--hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 611 NIKQGKQVHAMIIKT-GYDSE--TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 611 ~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
..+.+..-+..++.. ...|+ ...+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445555555555542 22222 4567778888999999999999999875 34678999999999999999999999
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CC
Q 040643 685 FEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PI 761 (968)
Q Consensus 685 ~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~ 761 (968)
|++.++ +.|+ ..++..+..++...|++++|.+.|+...+ +.|+-........++.+.++.++|.+.+++. ..
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999998 7897 45788888899999999999999998754 4565332222333456678999999999664 23
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHH-------HccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 762 EPDAMVWRTLLSACRVHKNMEIGEYAANHL-------LELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 762 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~-------~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|+...|. + .....|+...++ +.+.+ .++.|+.+.+|..|+.+|...|++++|....++..+
T Consensus 196 ~~~~~~~~--~-~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~ 264 (296)
T PRK11189 196 DKEQWGWN--I-VEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALA 264 (296)
T ss_pred CccccHHH--H-HHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44433332 1 222345554432 33333 366777889999999999999999999998665544
No 68
>PRK12370 invasion protein regulator; Provisional
Probab=98.92 E-value=7.7e-08 Score=112.18 Aligned_cols=209 Identities=11% Similarity=0.030 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH---------hcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYA---------KCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY 677 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~---------k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~ 677 (968)
+++++|...+..+++.. +.+...+..+...|. ..+++++|...+++.. ..+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 45678888888888743 223445555555443 2345889999999876 3377889999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHHhhcCChHHHHHH
Q 040643 678 ALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
+++|+..|++.++ +.|+. ..+..+..++...|++++|...++...+ +.|.. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~---l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANL--LSPISADIKYYYGWNLFMAGQLEEALQTINECLK---LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 9999999999999 77875 4678888899999999999999998864 46663 2333445567778999999999
Q ss_pred HHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 756 TEQM--PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 756 ~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+++. ...|+ +..+..+..++...|+.+.|+..++++....|++......|+..|...| ++|....+.+.
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll 500 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFL 500 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHH
Confidence 9886 22465 4445555556778999999999999999999998888899999999888 46766433343
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.88 E-value=7.6e-06 Score=82.52 Aligned_cols=310 Identities=13% Similarity=0.114 Sum_probs=155.0
Q ss_pred hHHHHHHHhhCCC--CCceeHHH-HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhccc--chhhhhhhhH
Q 040643 445 LNTAQEILRRLPE--DDVVSWTA-MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQ--ALNQGRQIHA 519 (968)
Q Consensus 445 ~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~--~~~~a~~i~~ 519 (968)
.++|..++.+... |+....|. |.-+|.+.+-++-+.++++--.+. -||+ |+..=+.+|..-. +-..+.+-..
T Consensus 167 YQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 167 YQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHH
Confidence 3445555555443 33334443 445677888888888887776653 3443 3444444443221 1122222222
Q ss_pred hhhhhcCCCCchhhhhHHHHHHHc-----CCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC
Q 040643 520 QSYISGFSDDLSIGNALISLYARC-----GRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA 594 (968)
Q Consensus 520 ~~~~~g~~~~~~~~~~Li~~y~k~-----g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 594 (968)
.+...+-.. -..+.-.++. ..-+.|.+++-.+...=+.+--.|+--|.+.++..+|..+.+++.. ..|
T Consensus 244 ~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP 316 (557)
T KOG3785|consen 244 ELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP 316 (557)
T ss_pred HHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CCh
Confidence 222221110 0011111221 1234455544333222122233355567888888888888777642 233
Q ss_pred CcchHHHHHHHH-----hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHH
Q 040643 595 NLYTFGSVVSAA-----ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMI 669 (968)
Q Consensus 595 ~~~t~~~ll~a~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li 669 (968)
-....-.+..+- .....+.-|.+.+..+-.++.+.|... --.+|.
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp------------------------------GRQsmA 366 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP------------------------------GRQSMA 366 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc------------------------------chHHHH
Confidence 333333332221 112234455555555544444433221 122333
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
+.+.-.-++++.+-.+.....- +.-|.+--..+..|....|.+.+|.++|-.+... .++-+.--...+...|.+.|+.
T Consensus 367 s~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCc
Confidence 3333334444444444444331 2223333344566677777777777777655321 2222222233445677788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCC
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLL-SACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
+-|.+++-++.-..+..+...|+ +-|.+.+.+--|-++++.+-.++|
T Consensus 445 ~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP 492 (557)
T KOG3785|consen 445 QLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP 492 (557)
T ss_pred hHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence 88888877776555555444444 448888888888888888888887
No 70
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.88 E-value=0.00031 Score=76.93 Aligned_cols=547 Identities=15% Similarity=0.182 Sum_probs=314.8
Q ss_pred ccchhHHHHHHHhcCCchHHHHHHhhC----CC-CCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040643 148 PLISNPLIDLYAKNGFIDSAKKVFNNL----CF-KDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALS 222 (968)
Q Consensus 148 ~~~~~~li~~y~~~g~~~~A~~~f~~~----~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 222 (968)
+.+|-.-+....+.|++..-+..|++. |. -....|.-.+.-....|-++-++.+|++..+- ++..-.--|.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 456666677778889999999999864 22 13346888888888899999999999998763 3344666677
Q ss_pred hhcccCchHHHHHHHHHHHHhc------CCCchhHHHHHHHHhhccCCh---hHHHHHHhhCCCC--C--cccHHHHHHH
Q 040643 223 ACTKIELFEIGEQFHGLIFKWG------FSSETFVCNALVTLYSRSGNL---TSAEQIFSKMQQR--D--GVTYNSLISG 289 (968)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~Li~~y~~~g~~---~~A~~~f~~m~~~--~--~~~~~~li~~ 289 (968)
-+...+++++|.+.+..++... .+.+-..|.-+-+..++.-+. -....++..+..+ | ...|++|...
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdY 257 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADY 257 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHH
Confidence 7778888888888887766432 134445566665555554322 2334445555433 3 2479999999
Q ss_pred HHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHH
Q 040643 290 LAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETA 369 (968)
Q Consensus 290 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A 369 (968)
|.+.|.+++|.++|++-...- ....-|+.+..+|+.......+..+- ...+.+..+. ..-+++-.
T Consensus 258 YIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~ 322 (835)
T KOG2047|consen 258 YIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELH 322 (835)
T ss_pred HHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHH
Confidence 999999999999998876542 22333666666665433222221111 0111111110 00112222
Q ss_pred HHHHhhCCC---------------CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--chhhhhhhhccCCch
Q 040643 370 YKFFLTTET---------------ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY--TYPTILRTCTSLGAL 432 (968)
Q Consensus 370 ~~~f~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~~~~~~~ 432 (968)
..-|+.+.+ .++..|..-... ..|+..+-...|.+..+. +.|-.. ....+-.
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~-------- 391 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWV-------- 391 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHH--------
Confidence 333333221 244455444332 356677777777776653 222211 1111111
Q ss_pred hhhHHHHHhhCChHHHHHHHhhCCCCCce-------eHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 040643 433 SLGEQIHTQLGNLNTAQEILRRLPEDDVV-------SWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC 505 (968)
Q Consensus 433 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 505 (968)
.-..++..-|+++.|+.+|++...-+-. .|..-...=.+..+++.|+++.+.... .|.... +..+
T Consensus 392 -~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~---vP~~~~----~~~y 463 (835)
T KOG2047|consen 392 -EFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH---VPTNPE----LEYY 463 (835)
T ss_pred -HHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc---CCCchh----hhhh
Confidence 1123344446666666666665543222 344444444455666667666555443 222211 1111
Q ss_pred hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHH---HHHhcCChhhHHH
Q 040643 506 AGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLIS---GFAQSGYCEGALQ 582 (968)
Q Consensus 506 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~---~~~~~g~~~~A~~ 582 (968)
+....+ +..+..+..+|+..++.--.+|-++....+++++.+--+.|-..++. -+-.+..++++++
T Consensus 464 ------d~~~pv-----Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk 532 (835)
T KOG2047|consen 464 ------DNSEPV-----QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFK 532 (835)
T ss_pred ------cCCCcH-----HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHH
Confidence 111100 01111244566667777778889999999999887765555444433 1234566888998
Q ss_pred HHHHhhhcCCcCCcc-hHHHHHHHH---hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH----hcCCHHHHHHHH
Q 040643 583 VFSQMTQVGVQANLY-TFGSVVSAA---ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA----KCGSIDDAKREF 654 (968)
Q Consensus 583 l~~~m~~~g~~p~~~-t~~~ll~a~---~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~----k~g~~~~A~~~f 654 (968)
.+++-...=--|+.. .++..|.-+ .....++.++.+|+++++ |.+|.-. ..+--.|+ +-|-...|..++
T Consensus 533 ~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiy 609 (835)
T KOG2047|consen 533 AYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIY 609 (835)
T ss_pred HHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 888765543334432 233333322 233479999999999999 6565422 22333344 458888999999
Q ss_pred hcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH---HHHcccCcHHHHHHHHHHhhhh
Q 040643 655 LEMPEK-----NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL---SACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 655 ~~~~~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
++.... -...||..|.--+..=-.....++|++.++ .-||...-...+ ..=+..|.++.|+.++.--.+-
T Consensus 610 erat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 610 ERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 987622 245789888754443333456678888888 578765433333 2346789999999998765443
Q ss_pred cCCCCCcchHHHHHHHHhhcCC
Q 040643 727 YGLVPKPEHYACVVDLLGRAGC 748 (968)
Q Consensus 727 ~~i~p~~~~y~~lv~~l~r~G~ 748 (968)
..-.-+.+.|...=+-=.|.|+
T Consensus 688 ~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 688 CDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred CCCcCChHHHHHHHHHHHhcCC
Confidence 2222336667777777788888
No 71
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.85 E-value=3.4e-07 Score=94.46 Aligned_cols=195 Identities=17% Similarity=0.169 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
..+..+...|...|++++|.+.|++..+. .|+ +...+..+...|
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~la~~~ 75 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPD----------------------------------DYLAYLALALYY 75 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc----------------------------------cHHHHHHHHHHH
Confidence 34666666777777777777777766543 122 233344445555
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
...|++++|.+.|++.. ..+...|..+...+...|++++|++.|++..+....|. ...+..+...+...|++++|.
T Consensus 76 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 155 (234)
T TIGR02521 76 QQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAE 155 (234)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555443 22444555566666666666666666666665322222 234444555566666666666
Q ss_pred HHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 040643 718 RYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 794 (968)
.+|+...+. .|+ ...+..+..++...|++++|.+.+++. ...| +...|..+.......|+.+.|....+.+.+.
T Consensus 156 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 156 KYLTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666655432 232 445556666666667777766666654 2222 3444445555566667777776666665554
Q ss_pred C
Q 040643 795 E 795 (968)
Q Consensus 795 ~ 795 (968)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 72
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=1.2e-06 Score=92.17 Aligned_cols=342 Identities=12% Similarity=0.081 Sum_probs=209.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-hhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSD-NIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
-...+-|.++|.+++|++.|.+.++ ..|| .+.|+..-.+|...|+|+.+.+--...++..+. -+-.+.--..++-.
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHEQ 195 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHHh
Confidence 3445668889999999999999887 5788 555666667778889998888776666654332 11222333445666
Q ss_pred cCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCCh--------hhHHHHHHHhhh-c--CCcCCcchHHHHHHHHhh---
Q 040643 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYC--------EGALQVFSQMTQ-V--GVQANLYTFGSVVSAAAN--- 608 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~--------~~A~~l~~~m~~-~--g~~p~~~t~~~ll~a~~~--- 608 (968)
.|++++|..- +|-.++..++..+.-. ..|.+-.++-.. . -+-|+.....+.+..+-.
T Consensus 196 lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~ 266 (606)
T KOG0547|consen 196 LGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK 266 (606)
T ss_pred hccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc
Confidence 6777766431 1112222222111111 111111222111 1 123333333333322211
Q ss_pred ----------hhhHHHHHHHH------------HHHHHh--C--CCC--C---------hhHHhHHhhHHHhcCCHHHHH
Q 040643 609 ----------LANIKQGKQVH------------AMIIKT--G--YDS--E---------TEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 609 ----------~~~~~~a~~~~------------~~~~~~--g--~~~--~---------~~~~~~li~~y~k~g~~~~A~ 651 (968)
-..+..+.+.+ ..+.+. + ..+ + ......-...+.-+|+.-.|.
T Consensus 267 ~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~ 346 (606)
T KOG0547|consen 267 PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQ 346 (606)
T ss_pred ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhh
Confidence 00111111111 111111 0 011 1 111112223455688888898
Q ss_pred HHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.-|+... .| ++..|--+...|++..+.++-.+.|.+..+ +.|. +-+|..-.....-.+++++|..=|++..
T Consensus 347 ~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai--- 421 (606)
T KOG0547|consen 347 EDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAI--- 421 (606)
T ss_pred hhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHh---
Confidence 8888766 23 333377788889999999999999999888 7774 6678877777777888999999998764
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------C
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE------D 798 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~ 798 (968)
.+.|. +..|.-+.-++.|.+++++++..|++. .++--+-+++-.....--+++++.|.+..+++++|+|. +
T Consensus 422 ~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~ 501 (606)
T KOG0547|consen 422 SLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVN 501 (606)
T ss_pred hcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccccc
Confidence 56776 666777778888999999999998887 23223566666777788889999999999999999999 8
Q ss_pred cchHHHHHHHHhh-cCCcchHHHHH
Q 040643 799 SATYVLLSNIYAA-AGKWDCRDQIR 822 (968)
Q Consensus 799 ~~~~~~l~~~y~~-~g~~~~a~~~~ 822 (968)
++++|.-+-+... .++.+.|..+.
T Consensus 502 ~~plV~Ka~l~~qwk~d~~~a~~Ll 526 (606)
T KOG0547|consen 502 AAPLVHKALLVLQWKEDINQAENLL 526 (606)
T ss_pred chhhhhhhHhhhchhhhHHHHHHHH
Confidence 8888776665554 13444555543
No 73
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.84 E-value=2.1e-06 Score=88.74 Aligned_cols=204 Identities=10% Similarity=0.035 Sum_probs=123.8
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHH
Q 040643 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALIS 538 (968)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 538 (968)
++........+|.+.|++.+...++..|.+.|+-.|+..-.. ...+++.+++
T Consensus 186 ~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l----------------------------e~~a~~glL~ 237 (400)
T COG3071 186 HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL----------------------------EQQAWEGLLQ 237 (400)
T ss_pred ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH----------------------------HHHHHHHHHH
Confidence 444556666777777888888888888877775544321100 0111222222
Q ss_pred HHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
-....+..+.-...+++.+.+ ++..-.+++.-+.+.|+.++|.++..+-.+.+..|+ ...+-.+.+.++.+.-
T Consensus 238 q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l 313 (400)
T COG3071 238 QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPL 313 (400)
T ss_pred HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHH
Confidence 222222222233344444422 344455666777777888888888877777777666 2223345555655555
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDV 693 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 693 (968)
.+..+.-.+. .+.++..+.+|...|.|.+.+.+|.+.|+... .|+..+|+-+..+|.+.|+..+|.+.+++.+..-.
T Consensus 314 ~k~~e~~l~~-h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 314 IKAAEKWLKQ-HPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHHh-CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhc
Confidence 5555444442 23344677788888888888888888888655 67778888888888888888888888777664333
Q ss_pred CC
Q 040643 694 MP 695 (968)
Q Consensus 694 ~P 695 (968)
.|
T Consensus 393 ~~ 394 (400)
T COG3071 393 QP 394 (400)
T ss_pred CC
Confidence 33
No 74
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=2.8e-07 Score=87.93 Aligned_cols=162 Identities=16% Similarity=0.132 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVD 741 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~ 741 (968)
....+.-+|.+.|+...|..-+++.++ ..|+. -++..+...|...|..+.|.+.|+... .+.|+ .+..+...-
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 345567788888888888888888888 67764 478888888888888888888888664 45666 666777778
Q ss_pred HHhhcCChHHHHHHHHhC---CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 742 LLGRAGCLSRAREFTEQM---PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m---~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
-|+..|++++|...+++. |..|. +.+|..+.....+.|+.+.|+...++.++++|+++.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 888888999999888887 54444 66777776666779999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 040643 818 RDQIRQIMKDRGV 830 (968)
Q Consensus 818 a~~~~~~m~~~g~ 830 (968)
|.-..+....+|.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9988887776653
No 75
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=3.9e-05 Score=83.18 Aligned_cols=379 Identities=11% Similarity=0.095 Sum_probs=196.0
Q ss_pred cCCChhHHHHHHHHhhccccCCCcc-cHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-ChhhHhHHHHHHHhcCChhHH
Q 040643 292 QCGYSDKALELFEKMQLDCLKPDCV-TVASLVSACASVGAFRTGEQLHSYAIKVGISK-DIIVEGSMLDLYVKCSDVETA 369 (968)
Q Consensus 292 ~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A 369 (968)
+.+..++|+..+. |..++.. +...-...|-++++++++..+|..+.+++.+. +...-..++..-. .-.+
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 5566677776665 3333332 33344445667777777777777777665422 2222222222111 1111
Q ss_pred HHHHhhCCCCCcchHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChH
Q 040643 370 YKFFLTTETENVVLWNVML---VAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLN 446 (968)
Q Consensus 370 ~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~ 446 (968)
. +.+..+.....+|..+- ..+...|++.+|+++++...+-+.+- +.. ++.. -+.+-..+
T Consensus 162 ~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~-----------l~~-~d~~-eEeie~el---- 223 (652)
T KOG2376|consen 162 Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREK-----------LED-EDTN-EEEIEEEL---- 223 (652)
T ss_pred H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHh-----------hcc-cccc-hhhHHHHH----
Confidence 1 34444443344444443 35667899999999988764321100 000 0000 00000000
Q ss_pred HHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH---HHhhcccchhhh------hhh
Q 040643 447 TAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAI---SACAGIQALNQG------RQI 517 (968)
Q Consensus 447 ~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll---~a~~~~~~~~~a------~~i 517 (968)
|+ .---|.-.+...|+.++|..++...++.. .+|........ .+...-.++-.+ +..
T Consensus 224 ------------~~-IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~ 289 (652)
T KOG2376|consen 224 ------------NP-IRVQLAYVLQLQGQTAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQ 289 (652)
T ss_pred ------------HH-HHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHH
Confidence 00 11123445667799999999999888763 44443322221 222222221110 000
Q ss_pred hHh-------hhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCC-cccHHHHHHHHHh--cCChhhHHHHHHHh
Q 040643 518 HAQ-------SYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKD-NISWNGLISGFAQ--SGYCEGALQVFSQM 587 (968)
Q Consensus 518 ~~~-------~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d-~~~~~~li~~~~~--~g~~~~A~~l~~~m 587 (968)
+.. .....-......-+.++.+|. +..+.++++-...+... ...+.+++....+ .....+|.+++...
T Consensus 290 ~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~ 367 (652)
T KOG2376|consen 290 VFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQF 367 (652)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 000 000000111222345566554 55677777777776543 3344444443332 22456666666665
Q ss_pred hhcCCcCCc--chHHHHHHHHhhhhhHHHHHHHHH--------HHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcC
Q 040643 588 TQVGVQANL--YTFGSVVSAAANLANIKQGKQVHA--------MIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 588 ~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~--------~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
-+. .|.. +.....+......|+++.|..++. .+.+.+ ..+.+..+++.+|.+.++.+.|..++++.
T Consensus 368 ~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 368 ADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred hcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHH
Confidence 543 3443 233344445567899999999888 344433 34456678889999999888888888765
Q ss_pred C------CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHH
Q 040643 658 P------EKNE----VSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 658 ~------~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~ 720 (968)
. .+.. ..|.-....-.++|+.++|..+++++.+ ..| |.-+...++.|++.. +++.|..+-
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k--~n~~d~~~l~~lV~a~~~~-d~eka~~l~ 514 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK--FNPNDTDLLVQLVTAYARL-DPEKAESLS 514 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH--hCCchHHHHHHHHHHHHhc-CHHHHHHHh
Confidence 4 1121 2344444445677888888888888887 344 455677777777654 355555443
No 76
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.81 E-value=2e-06 Score=85.95 Aligned_cols=249 Identities=14% Similarity=0.113 Sum_probs=182.7
Q ss_pred hcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCC--hhHHhHHhhHHHhcCCHH
Q 040643 573 QSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKT-GYDSE--TEASNSLITLYAKCGSID 648 (968)
Q Consensus 573 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~--~~~~~~li~~y~k~g~~~ 648 (968)
-+++.++|.++|-+|.+. .|.. .+-.++-+-+.+.|..+.|..+|.-+.++ ++..+ ....-.|..-|.+.|-+|
T Consensus 47 Ls~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hhcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 356788888888888763 2222 23345556677788889999998887763 22222 233456777899999999
Q ss_pred HHHHHHhcCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHcccCcHHHHHHHHH
Q 040643 649 DAKREFLEMPE-KN--EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 649 ~A~~~f~~~~~-~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
.|+.+|..+.+ ++ ....-.|+..|-...++++|++.-+++.+.|-.+..+ -|.-|........+++.|+..+.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 99999999875 32 3466778999999999999999999999977666543 25556667788889999999999
Q ss_pred HhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 722 SMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 722 ~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+..+ ..|+ +..--.+.++....|+++.|.+-++.. .-.|+ +.+...|..+|...|+.+.+.....+..+..|.
T Consensus 205 kAlq---a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 205 KALQ---ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHh---hCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 7754 3565 445556779999999999999999887 55676 677888999999999999999999999999886
Q ss_pred CcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.....++---+....|.-+.+..+.+.++
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 55444443334444454433344455443
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=4e-05 Score=83.06 Aligned_cols=182 Identities=15% Similarity=0.137 Sum_probs=121.6
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPE--KNEVSWNAMITGFS-QHGYALEAINLFEKMKKHDVMPNHV--TFVGVLSA 706 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a 706 (968)
..-++|+.+|. +..+.+.++-...+. |....=+.+..++. +.....+|.+++.+.-+ -.|+.. .....+.-
T Consensus 310 ~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl 385 (652)
T KOG2376|consen 310 YRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQL 385 (652)
T ss_pred HHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHH
Confidence 34467777775 445677777777763 33333333333332 22357888888888776 466653 34445556
Q ss_pred HcccCcHHHHHHHHH--------HhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--------CCCCC-HHHHH
Q 040643 707 CSHVGLVNEGLRYFE--------SMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--------PIEPD-AMVWR 769 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~--------~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--------~~~p~-~~~~~ 769 (968)
....|+++.|.+++. +.. +.+.. +.+.+.++.++.+.+.-+-|-+++.+. +-++. ..+|.
T Consensus 386 ~is~gn~~~A~~il~~~~~~~~ss~~-~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~ 462 (652)
T KOG2376|consen 386 KISQGNPEVALEILSLFLESWKSSIL-EAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMR 462 (652)
T ss_pred HHhcCCHHHHHHHHHHHhhhhhhhhh-hhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHH
Confidence 778999999999988 442 22333 455678899999988755555544433 44444 45555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
-+.+.-..+|+-+.|....+.+++..|+|....+.|.-.|+... .+.|..+
T Consensus 463 ~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 463 EAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred HHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 55566667899999999999999999999999999999988753 3344443
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=2.6e-07 Score=91.90 Aligned_cols=154 Identities=14% Similarity=0.120 Sum_probs=94.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~ 750 (968)
+-..++.++|+++++...+ ..|+.+ ...++...|.-.|+.|-|+.|++.+..- |+. +++.|..+.-.+.-++++|
T Consensus 300 ~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchh
Confidence 3333444444444444443 333322 2333333444444444444444443322 221 1233444444444444454
Q ss_pred HHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 751 RAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 751 eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
-++.-|++. .-.|+ +.+|-.|-.....-||+.+|.+.++.++.-+|+++.+|+.|+-+-...|+.++|..+....
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHh
Confidence 444444443 12344 6789888888888999999999999999999999999999999999999999999998887
Q ss_pred HhCC
Q 040643 826 KDRG 829 (968)
Q Consensus 826 ~~~g 829 (968)
++..
T Consensus 456 ~s~~ 459 (478)
T KOG1129|consen 456 KSVM 459 (478)
T ss_pred hhhC
Confidence 7643
No 79
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=5e-05 Score=84.71 Aligned_cols=433 Identities=14% Similarity=0.100 Sum_probs=215.2
Q ss_pred hhhhCCCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcCCCccchhhh
Q 040643 54 IYLTSGDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVN 133 (968)
Q Consensus 54 ~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~~~ 133 (968)
.|.--|+.+.|.+..+.+... ..|..|.+.+.+..+.+-|.-++..|.... .++
T Consensus 737 fyvtiG~MD~AfksI~~IkS~--~vW~nmA~McVkT~RLDVAkVClGhm~~aR------------------------gaR 790 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIKSD--SVWDNMASMCVKTRRLDVAKVCLGHMKNAR------------------------GAR 790 (1416)
T ss_pred EEEEeccHHHHHHHHHHHhhh--HHHHHHHHHhhhhccccHHHHhhhhhhhhh------------------------hHH
Confidence 456678888888777666543 469999999999999999888888775421 111
Q ss_pred HHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Q 040643 134 QIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPT 213 (968)
Q Consensus 134 ~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 213 (968)
.+ .+....|-+ .-....-.-...|-+++|..++.+-.+ |..|=.-|...|.|++|+++-+.=.+..++
T Consensus 791 Al-R~a~q~~~e----~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr-- 858 (1416)
T KOG3617|consen 791 AL-RRAQQNGEE----DEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLR-- 858 (1416)
T ss_pred HH-HHHHhCCcc----hhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehh--
Confidence 11 111111110 000111112344555666666554433 223333455566677776665543332222
Q ss_pred hhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcC
Q 040643 214 PYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQC 293 (968)
Q Consensus 214 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~ 293 (968)
.||..-.+-+-..+|.+.|.+.++. .|. +-..+. .++. .++....+..+.+..+....|- -..+-..
T Consensus 859 -~Tyy~yA~~Lear~Di~~AleyyEK---~~~-hafev~-rmL~-----e~p~~~e~Yv~~~~d~~L~~WW--gqYlES~ 925 (1416)
T KOG3617|consen 859 -NTYYNYAKYLEARRDIEAALEYYEK---AGV-HAFEVF-RMLK-----EYPKQIEQYVRRKRDESLYSWW--GQYLESV 925 (1416)
T ss_pred -hhHHHHHHHHHhhccHHHHHHHHHh---cCC-hHHHHH-HHHH-----hChHHHHHHHHhccchHHHHHH--HHHHhcc
Confidence 2333333333344555555555442 111 000111 1111 1223333444444444333332 2233346
Q ss_pred CChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHH
Q 040643 294 GYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFF 373 (968)
Q Consensus 294 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 373 (968)
|..+.|+.+|...+. |-++++..+-.|..++|.++-.+ ..|...+-.|..+|-..|++.+|...|
T Consensus 926 GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred cchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 777777777766543 34455555666777777666543 335566667778888888888888888
Q ss_pred hhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCC-chhhhHHHHHhhCChHHHHHHH
Q 040643 374 LTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLG-ALSLGEQIHTQLGNLNTAQEIL 452 (968)
Q Consensus 374 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~~~~~~~~~~~~~~a~~~~ 452 (968)
.+. .++...|..+-.++.-++-. -+.-|- ...-.....+-+-..| ....|..+|.+.|.+.+|.++-
T Consensus 991 TrA-----qafsnAIRlcKEnd~~d~L~-nlal~s------~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 991 TRA-----QAFSNAIRLCKENDMKDRLA-NLALMS------GGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred HHH-----HHHHHHHHHHHhcCHHHHHH-HHHhhc------CchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHH
Confidence 663 23334444333322222111 111110 0001111111122233 4556666666667776666653
Q ss_pred hhCC--------------CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhh
Q 040643 453 RRLP--------------EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518 (968)
Q Consensus 453 ~~~~--------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 518 (968)
-+-. ..|+...+--.+.|+.+.++++|..++-..++ |...+..|...+ ..-..++-
T Consensus 1059 F~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~a 1128 (1416)
T KOG3617|consen 1059 FRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFA 1128 (1416)
T ss_pred HhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHH
Confidence 2222 12455556666777788888888888766554 344444444332 11222222
Q ss_pred Hhhhh-hcCCCC----chhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhh
Q 040643 519 AQSYI-SGFSDD----LSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEG 579 (968)
Q Consensus 519 ~~~~~-~g~~~~----~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~ 579 (968)
+.|.- ..-.|+ ..+...+.+.+.+.|.+..|-+-|.+.-++ -.-+.++.+.|+.++
T Consensus 1129 E~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1129 ELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQK 1189 (1416)
T ss_pred HhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcce
Confidence 22211 111122 234455677788888888887777665432 112344555555443
No 80
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.73 E-value=0.00035 Score=80.32 Aligned_cols=175 Identities=14% Similarity=0.048 Sum_probs=102.2
Q ss_pred hhHHHHHHHHhCCCCCc-cchhHHHHHHHhcCCchHHHHHHhhC---CCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 040643 132 VNQIHGLIISHGFGGSP-LISNPLIDLYAKNGFIDSAKKVFNNL---CFKDSVSWVAMISGFSQNGYEREAILLFCQMHI 207 (968)
Q Consensus 132 ~~~i~~~~~~~g~~~~~-~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 207 (968)
...+|..+....+.++. ..|..|-..|....+...|.+.|+.. ...|..+|......|++...++.|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 34455555555544443 45677777777777888888888865 344566788888889999999988887322211
Q ss_pred cC-CCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHH
Q 040643 208 LG-TVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSL 286 (968)
Q Consensus 208 ~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~l 286 (968)
.. ...-...|...--.+...+....+..-++...+.. +.|...|..|..+|.++|++..|.++|++...-+..+|-.-
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 10 00000111111112334444444544444444433 34566777788888888888888888877665444433221
Q ss_pred ---HHHHHcCCChhHHHHHHHHhh
Q 040643 287 ---ISGLAQCGYSDKALELFEKMQ 307 (968)
Q Consensus 287 ---i~~~~~~g~~~~A~~l~~~m~ 307 (968)
...-+..|.+.+|+..+....
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Confidence 123356777777777776654
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=8.9e-06 Score=82.04 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 040643 464 TAMIVGFVQHGMFGEALELFEEM 486 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m 486 (968)
-.|+--|.+.++.++|..+.+++
T Consensus 289 lNL~iYyL~q~dVqeA~~L~Kdl 311 (557)
T KOG3785|consen 289 LNLIIYYLNQNDVQEAISLCKDL 311 (557)
T ss_pred hhheeeecccccHHHHHHHHhhc
Confidence 34455567777788887777665
No 82
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.72 E-value=8.9e-07 Score=98.24 Aligned_cols=161 Identities=16% Similarity=0.143 Sum_probs=115.6
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC----------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCh-
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP----------EKNEV-SWNAMITGFSQHGYALEAINLFEKMKKH---DVMPNH- 697 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~----------~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~Pd~- 697 (968)
+++.|...|.+.|++++|...+++.. .|.+. ..+.++..|...+.+++|..++++..+. -..++.
T Consensus 285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~ 364 (508)
T KOG1840|consen 285 TLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNV 364 (508)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccch
Confidence 34445556777777776666655432 22333 3566677778888888888888876542 123333
Q ss_pred ---HHHHHHHHHHcccCcHHHHHHHHHHhhhhc-----CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--------C
Q 040643 698 ---VTFVGVLSACSHVGLVNEGLRYFESMSTEY-----GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--------P 760 (968)
Q Consensus 698 ---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--------~ 760 (968)
-++..+...+.+.|.++||.++|++..+.. +..+. ..+++-|...|.+.++.++|.+++.+. |
T Consensus 365 ~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~ 444 (508)
T KOG1840|consen 365 NLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGP 444 (508)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCC
Confidence 368888888999999999999998875532 11222 556788888889999988888887764 5
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 761 IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 761 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
-.|+ ..++..|...|+..||+|.|+...++++.
T Consensus 445 ~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 445 DHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred CCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 5666 68899999999999999999999998774
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.71 E-value=8.9e-05 Score=83.01 Aligned_cols=498 Identities=14% Similarity=0.094 Sum_probs=264.1
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhc---ccCchHHH-------------------HHH----HHHHHHhc
Q 040643 191 QNGYEREAILLFCQMHILGTVPTPYAISSALSACT---KIELFEIG-------------------EQF----HGLIFKWG 244 (968)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~---~~~~~~~a-------------------~~~----~~~~~~~g 244 (968)
..+.+++++.-+..-...+..-++.++..+.+++. ..++.++. ... +..+....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777776666666666555533 22333332 111 11122223
Q ss_pred CCCchhHHHHHHHHhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCccc-HHH
Q 040643 245 FSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVT-VAS 320 (968)
Q Consensus 245 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ 320 (968)
+.-|..+|..|.-+...+|+++.+-+.|++... .....|+.+-..|...|.-..|+.+++.-....-.|+..+ +-.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 566888899999999999999999999988653 2345799999999999998999998877654433354443 333
Q ss_pred HHHHHh-ccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHH
Q 040643 321 LVSACA-SVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSE 399 (968)
Q Consensus 321 ll~a~~-~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (968)
+-+.|. +.+.+++|...-..++... -.+++++... .|-.+.-+|...-.
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~--------------~~~~~~l~~~-------------~~l~lGi~y~~~A~--- 448 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLL--------------GGQRSHLKPR-------------GYLFLGIAYGFQAR--- 448 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHh--------------hhhhhhhhhh-------------HHHHHHHHHHhHhh---
Confidence 333343 3455556555555544421 0111122111 11111111111000
Q ss_pred HHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHH
Q 040643 400 SFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEA 479 (968)
Q Consensus 400 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 479 (968)
.++ ++. -+.-...++
T Consensus 449 -------------~a~----------------------------------------------~~s------eR~~~h~ks 463 (799)
T KOG4162|consen 449 -------------QAN----------------------------------------------LKS------ERDALHKKS 463 (799)
T ss_pred -------------cCC----------------------------------------------ChH------HHHHHHHHH
Confidence 000 000 000011234
Q ss_pred HHHHHHHHhc-CCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC
Q 040643 480 LELFEEMENQ-GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA 558 (968)
Q Consensus 480 ~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 558 (968)
++.+++..+. +-.|+..-|.++- ++..++++.|.+...+..+.+-..+...|.-|.-.+...+++.+|..+.+...+
T Consensus 464 lqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 464 LQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred HHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4444443332 1233333332222 223344555555555555554455556666666666666666666666554321
Q ss_pred C---CcccHHHHHHHHHhcCChhhHHHHHHHhhhc--CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhH
Q 040643 559 K---DNISWNGLISGFAQSGYCEGALQVFSQMTQV--GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEA 633 (968)
Q Consensus 559 ~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 633 (968)
. |.+....-|..-..-++.++|+.....+..- ...|=..|.. .|....-+.-...... .....+.+
T Consensus 542 E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~--------~g~~~~lk~~l~la~~-q~~~a~s~ 612 (799)
T KOG4162|consen 542 EFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD--------EGKLLRLKAGLHLALS-QPTDAIST 612 (799)
T ss_pred HhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh--------hhhhhhhhcccccCcc-cccccchh
Confidence 1 1111111111112245555555554444321 0000000000 0000000000000000 00001111
Q ss_pred Hh---HHhhHHHhcCCHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 040643 634 SN---SLITLYAKCGSIDDAKREFLEMPEKN------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGV 703 (968)
Q Consensus 634 ~~---~li~~y~k~g~~~~A~~~f~~~~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~l 703 (968)
+. +++..=.+.-..+.....|...+.|+ ...|......+...++.++|...+.+... +.|-. ..|...
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~ 690 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLR 690 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHh
Confidence 11 12211111111122222223333333 23566777788888888888877777766 66653 345555
Q ss_pred HHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHH--HHHhC-CCCCC-HHHHHHHHHHHHhc
Q 040643 704 LSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRARE--FTEQM-PIEPD-AMVWRTLLSACRVH 778 (968)
Q Consensus 704 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~--~~~~m-~~~p~-~~~~~~ll~~~~~~ 778 (968)
...+...|..+||.+.|... .-+.|+ +..-..+..+|.+.|+-.-|.. +...+ .+.|+ ...|..|....+..
T Consensus 691 G~~~~~~~~~~EA~~af~~A---l~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~ 767 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVA---LALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKL 767 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHH---HhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Confidence 56677788999999988855 356777 6677788889999998777766 77776 67776 88999999999999
Q ss_pred CChhHHHHHHHHHHccCCCCc
Q 040643 779 KNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~ 799 (968)
|+.+.|...+..+++|++.+|
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhccCCC
Confidence 999999999999999998876
No 84
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.71 E-value=2.3e-06 Score=91.26 Aligned_cols=201 Identities=10% Similarity=-0.047 Sum_probs=135.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCC
Q 040643 601 SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGY 677 (968)
Q Consensus 601 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~ 677 (968)
..-..+...|+.++|...+..+++.. +.+...++.+...|...|++++|.+.|++.. .| +..+|..+...+...|+
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 147 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR 147 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 33334555566666666666665543 3456788889999999999999999999875 34 56788889999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH--HHH
Q 040643 678 ALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA--REF 755 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA--~~~ 755 (968)
+++|++.|++..+ ..|+.......+..+...++.++|...|...... ..|+... ..++..+ .|+++++ .+.
T Consensus 148 ~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~-~~~~~~~--lg~~~~~~~~~~ 220 (296)
T PRK11189 148 YELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWG-WNIVEFY--LGKISEETLMER 220 (296)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccH-HHHHHHH--ccCCCHHHHHHH
Confidence 9999999999998 6786542222222345577899999999765432 2333222 2344333 4554433 322
Q ss_pred HHh-CC----CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-CcchHHHHHHHH
Q 040643 756 TEQ-MP----IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE-DSATYVLLSNIY 809 (968)
Q Consensus 756 ~~~-m~----~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y 809 (968)
+.+ .. ..|+ ...|..|...+...|+.+.|...++++++++|. ....-..+..+.
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~ 281 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELA 281 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 222 11 1222 467888888899999999999999999999974 444444444433
No 85
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.57 E-value=0.00034 Score=76.95 Aligned_cols=157 Identities=15% Similarity=0.158 Sum_probs=86.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHH
Q 040643 328 VGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIF 404 (968)
Q Consensus 328 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 404 (968)
.+++..+....+.+++ +++....+.....-.....|+-++|......-.. ++-++|..+.-.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 4455555555555554 2222222222222223445666666666655443 34567877777777777788888888
Q ss_pred HHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh---hCCCCCceeHHHHHHHHHhcCChhHHHH
Q 040643 405 KQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR---RLPEDDVVSWTAMIVGFVQHGMFGEALE 481 (968)
Q Consensus 405 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~ 481 (968)
...... .||..... ...--+..++++++-....-. +..+....+|..+..++.-.|+...|..
T Consensus 99 ~nAl~~--~~dN~qil------------rDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 99 RNALKI--EKDNLQIL------------RDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHhc--CCCcHHHH------------HHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776543 23322110 011111222233332222222 2223456789999999999999999999
Q ss_pred HHHHHHhcC-CCCChhhHH
Q 040643 482 LFEEMENQG-IQSDNIGFS 499 (968)
Q Consensus 482 l~~~m~~~g-~~pd~~t~~ 499 (968)
+.++..+.. -.|+...+.
T Consensus 165 il~ef~~t~~~~~s~~~~e 183 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYE 183 (700)
T ss_pred HHHHHHHhhccCCCHHHHH
Confidence 999987764 246655554
No 86
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.55 E-value=1.3e-05 Score=76.92 Aligned_cols=193 Identities=17% Similarity=0.106 Sum_probs=130.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 040643 605 AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 605 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 681 (968)
.+.+.|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+-|++.. ..+-...|....-+|..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3344444444444444444432 3345566677777888888888888887654 34556677777777888888888
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 682 INLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 682 ~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
...|++....-.-|. ..||..+.-.-.++|+.+.|..+|+...+ +.|+ ......|.+.....|++-+|..+++..
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 888888876433333 35777777777778888888888876543 3555 556677778888888888888888776
Q ss_pred --CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 760 --PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 760 --~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
...+++....-.+.--+..||.+.+.+.-.++-.+-|.....
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 344666655555555677888888888888888888866543
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.53 E-value=3.5e-06 Score=84.05 Aligned_cols=226 Identities=14% Similarity=0.067 Sum_probs=181.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCC--CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHH-HHHHHhhh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKID--AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGS-VVSAAANL 609 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~a~~~~ 609 (968)
-+-+..+|.+.|.+.+|.+.|+.-. .+-+.||--|-..|.+-.+++.|+.+|.+-.+. .|-.+||.. ..+.+...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHH
Confidence 3678899999999999999998654 346678888999999999999999999987754 677777753 44566778
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
+..+.+.++++.+.+.. +.++....++...|.-.++.+-|.+.+.++. -.+...|+.+.-+|.-.++++-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 89999999999988854 4566666777778888899999999998866 4577888888888888999999999999
Q ss_pred HHHHCCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC
Q 040643 687 KMKKHDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIE 762 (968)
Q Consensus 687 ~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~ 762 (968)
+.+..--.|+.. .|..+.....-.|++.-|.+.|+-.... .|+ .+.|+.+.-+-.|.|++++|..+++.. ...
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~---d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS---DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc---CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 998876667743 5777888888899999999999866432 333 677888888888999999999999876 344
Q ss_pred CC
Q 040643 763 PD 764 (968)
Q Consensus 763 p~ 764 (968)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 44
No 88
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.51 E-value=0.00025 Score=81.44 Aligned_cols=564 Identities=13% Similarity=0.034 Sum_probs=295.3
Q ss_pred HHHHHHHHHHhcCCCc-hhHHHHHHHHhhccCChhHHHHHHhhCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHhhc
Q 040643 233 GEQFHGLIFKWGFSSE-TFVCNALVTLYSRSGNLTSAEQIFSKMQQR---DGVTYNSLISGLAQCGYSDKALELFEKMQL 308 (968)
Q Consensus 233 a~~~~~~~~~~g~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (968)
+..++..+....+.++ ...|..|-..|....+...|.+.|+..-+- |+.+|-.....|++...++.|..+.-.--+
T Consensus 475 ~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~q 554 (1238)
T KOG1127|consen 475 ALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQ 554 (1238)
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhh
Confidence 3344444444444444 346788888888888889999999887653 667899999999999999999998332211
Q ss_pred cc-cCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHH
Q 040643 309 DC-LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVM 387 (968)
Q Consensus 309 ~g-~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l 387 (968)
.. ...-...|..+--.+...++...+..-++...+.. +.|...|..|..+|..+|.+..|.++|++...-++.+|-..
T Consensus 555 ka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 555 KAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 10 00001111122223345556666666666666654 55778899999999999999999999988776554443322
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhcC------CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCC--
Q 040643 388 ---LVAYGQLNDLSESFQIFKQMQTEG------LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLP-- 456 (968)
Q Consensus 388 ---i~~~~~~g~~~~A~~l~~~m~~~g------~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~-- 456 (968)
...-+-.|.+++|++.+......- ..--..++..+...+...|-...+. ..++++.+.|.-..
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav------d~~eksie~f~~~l~h 707 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV------DFFEKSIESFIVSLIH 707 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHHHH
Confidence 223456799999999888765431 0000001111100000000000000 11111111111100
Q ss_pred --CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch---h---hhhhhhHhhhhhcCCC
Q 040643 457 --EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL---N---QGRQIHAQSYISGFSD 528 (968)
Q Consensus 457 --~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~---~a~~i~~~~~~~g~~~ 528 (968)
..+...|-.+ ..|..+|-...- . .|+......+..-.-..+.. + .|-+.. .....+..
T Consensus 708 ~~~~~~~~Wi~a----------sdac~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~--~~hlsl~~ 773 (1238)
T KOG1127|consen 708 SLQSDRLQWIVA----------SDACYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECG--IAHLSLAI 773 (1238)
T ss_pred hhhhhHHHHHHH----------hHHHHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHh--hHHHHHhh
Confidence 1112222211 123333333220 0 22222222222212222222 1 010000 11111122
Q ss_pred CchhhhhHHHHHHH----cC----CHHHHHHHHHhC---CCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc
Q 040643 529 DLSIGNALISLYAR----CG----RIQEAYLVFNKI---DAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY 597 (968)
Q Consensus 529 ~~~~~~~Li~~y~k----~g----~~~~A~~~f~~m---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 597 (968)
+...|-.|...|.+ +| +...|...+... ...+...||.|.-. ...|.+.-|.--|-+-.... +-+..
T Consensus 774 ~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~ 851 (1238)
T KOG1127|consen 774 HMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHC 851 (1238)
T ss_pred ccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchh
Confidence 23333334333332 22 223444444432 23456667766544 44455555544444433221 22344
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--------CCCHHHHHHHH
Q 040643 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--------EKNEVSWNAMI 669 (968)
Q Consensus 598 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~d~~~~~~li 669 (968)
+|..+--.|....+.+.|.+.+..+.... +.+...|-...-.--..|++-++..+|..-. -++..-|-.-.
T Consensus 852 ~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~t 930 (1238)
T KOG1127|consen 852 QWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCAT 930 (1238)
T ss_pred heeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHH
Confidence 55555555666677777777777665532 1222222222222334566666666665411 23555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC--------CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHH--
Q 040643 670 TGFSQHGYALEAINLFEKMKKH--------DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC-- 738 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~--------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~-- 738 (968)
.-..++|+.++-+..-++.-.. +-.|+ ...|...++...|.+.++++.+...+...-...+-+...|+.
T Consensus 931 e~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak 1010 (1238)
T KOG1127|consen 931 EIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAK 1010 (1238)
T ss_pred HHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5556677766655443333211 12454 567888888888888888888776655332222333444443
Q ss_pred --HHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh---cC
Q 040643 739 --VVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA---AG 813 (968)
Q Consensus 739 --lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---~g 813 (968)
...++...|.++.|..-....+.+-|..+.++-++. .-.|+++.+...+++++.+--++..--++++.+... +|
T Consensus 1011 ~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~ 1089 (1238)
T KOG1127|consen 1011 PDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLAR 1089 (1238)
T ss_pred hhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcc
Confidence 334555678888887777777777777776666665 456789999999999998876666655666655443 34
Q ss_pred CcchHHHH
Q 040643 814 KWDCRDQI 821 (968)
Q Consensus 814 ~~~~a~~~ 821 (968)
.-+.|...
T Consensus 1090 ~k~~A~~l 1097 (1238)
T KOG1127|consen 1090 QKNDAQFL 1097 (1238)
T ss_pred cchHHHHH
Confidence 44555543
No 89
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.47 E-value=0.00078 Score=74.26 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=134.9
Q ss_pred cCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC---CCcccHHHHHHHHHcCCChhHHHHHH
Q 040643 227 IELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ---RDGVTYNSLISGLAQCGYSDKALELF 303 (968)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 303 (968)
.+.+..+..+.+.+++ +++....+....---+...|+-++|......-.. ++.++|..+--.+-...++++|+..|
T Consensus 20 ~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 3445555555555555 3222233332222223445777777766654433 35567887777777777888888888
Q ss_pred HHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhh---CCCCC
Q 040643 304 EKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLT---TETEN 380 (968)
Q Consensus 304 ~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~---~~~~~ 380 (968)
...... .||.- .++.-|--.-++.++++.....-.. .....
T Consensus 99 ~nAl~~--~~dN~----------------------------------qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ 142 (700)
T KOG1156|consen 99 RNALKI--EKDNL----------------------------------QILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ 142 (700)
T ss_pred HHHHhc--CCCcH----------------------------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence 776543 33332 2222222222222333222222211 12234
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCC-
Q 040643 381 VVLWNVMLVAYGQLNDLSESFQIFKQMQTEG-LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPED- 458 (968)
Q Consensus 381 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~- 458 (968)
...|.....++.-.|+...|..++++..+.. -.|+...+.-...-+.+ .+++...|..+.|.+......+.
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~-------n~i~~E~g~~q~ale~L~~~e~~i 215 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ-------NQILIEAGSLQKALEHLLDNEKQI 215 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH-------HHHHHHcccHHHHHHHHHhhhhHH
Confidence 5679999999999999999999999988765 35555555443322221 23444446666666655544321
Q ss_pred --CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhh
Q 040643 459 --DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA 506 (968)
Q Consensus 459 --~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 506 (968)
....--+....+.+.+++++|..++..++.. .||..-|.-.+..|.
T Consensus 216 ~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~l 263 (700)
T KOG1156|consen 216 VDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKAL 263 (700)
T ss_pred HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHH
Confidence 1222334567788899999999999999885 688887766665554
No 90
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.46 E-value=0.0018 Score=72.78 Aligned_cols=300 Identities=18% Similarity=0.167 Sum_probs=173.6
Q ss_pred CccchhHHHH--HHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhc-CC--------CCChh
Q 040643 147 SPLISNPLID--LYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHIL-GT--------VPTPY 215 (968)
Q Consensus 147 ~~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~ 215 (968)
|..+..++++ .|..-|++|.|.+-...+. ..+.|..|.+.+.+..+.+-|.-.+-.|... |. .|+ .
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e 801 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E 801 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence 4455566664 4677899999988877764 3457999999999888888777766666431 11 122 1
Q ss_pred hHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCC-cccHHHHHHHHHcCC
Q 040643 216 AISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRD-GVTYNSLISGLAQCG 294 (968)
Q Consensus 216 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~-~~~~~~li~~~~~~g 294 (968)
+=..+.-.....|.+++|+.++....+. ..|=..|-..|.+++|.++-+.-..-. -.||..-...+-..+
T Consensus 802 ~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 802 DEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence 1122222234678889999998887763 345567888899999998865432111 124555555566677
Q ss_pred ChhHHHHHHHHhh----------ccc---------cCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhH
Q 040643 295 YSDKALELFEKMQ----------LDC---------LKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGS 355 (968)
Q Consensus 295 ~~~~A~~l~~~m~----------~~g---------~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 355 (968)
+.+.|++.|++-. ... -.-|...|..--.-.-+.|+.+.|..++..+.. |-+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs 943 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS 943 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence 8888888887632 111 011222222222223344555555554443322 334
Q ss_pred HHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhh
Q 040643 356 MLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLG 435 (968)
Q Consensus 356 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 435 (968)
++...+-.|+.++|-++-++-. |....-.+...|-..|++.+|..+|.+.+ +|...|+.|...+--+..
T Consensus 944 ~VrI~C~qGk~~kAa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L 1012 (1416)
T KOG3617|consen 944 MVRIKCIQGKTDKAARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRL 1012 (1416)
T ss_pred heeeEeeccCchHHHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHH
Confidence 4555555677777777766533 44555677888888999999999998865 466666666554433332
Q ss_pred HHHHHhh--CChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHH
Q 040643 436 EQIHTQL--GNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALEL 482 (968)
Q Consensus 436 ~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 482 (968)
..+-... .++-.|.+.|+.... -..--+-.|-+.|.+.+|+++
T Consensus 1013 ~nlal~s~~~d~v~aArYyEe~g~----~~~~AVmLYHkAGm~~kALel 1057 (1416)
T KOG3617|consen 1013 ANLALMSGGSDLVSAARYYEELGG----YAHKAVMLYHKAGMIGKALEL 1057 (1416)
T ss_pred HHHHhhcCchhHHHHHHHHHHcch----hhhHHHHHHHhhcchHHHHHH
Confidence 2222111 222233333433321 111223445667777777665
No 91
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.41 E-value=2.4e-06 Score=79.92 Aligned_cols=122 Identities=9% Similarity=-0.013 Sum_probs=92.3
Q ss_pred HHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 683 NLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 683 ~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
.+|++.++ +.|+. +.....++...|++++|..+|+... .+.|+ ...|..+..++.+.|++++|.+.+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45566665 56664 4455667777888888888887764 33554 667777888888888888888888877 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 761 IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 761 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..|+ +..|..+..++...|+.+.|...+++++++.|+++..+...+++...
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 5564 67777777778889999999999999999999999999888876543
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.41 E-value=1.4e-05 Score=82.54 Aligned_cols=179 Identities=13% Similarity=0.079 Sum_probs=106.2
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP--EKN-E---VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TF 700 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d-~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~ 700 (968)
...+-.+...|.+.|++++|...|+++. .|+ . ..|..+...|...|++++|+..|+++.+ ..|+.. ++
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 110 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR--LHPNHPDADYAY 110 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCchHHHH
Confidence 4444555556666677777766666554 221 1 3455666666666777777777777666 444322 33
Q ss_pred HHHHHHHccc--------CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 040643 701 VGVLSACSHV--------GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLL 772 (968)
Q Consensus 701 ~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll 772 (968)
..+..++... |+.++|.+.|+.+.+. .|+..... .++.+.+....... .....+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~---~a~~~~~~~~~~~~-----------~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAP---DAKKRMDYLRNRLA-----------GKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHH---HHHHHHHHHHHHHH-----------HHHHHHH
Confidence 3334444433 5566666666665443 33321111 11111111111100 0112344
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPED---SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
..+...|+.+.|....+++++..|++ +..+..++.+|...|++++|....+.+..+
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45678899999999999999997765 478999999999999999999987777654
No 93
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=2.8e-07 Score=61.15 Aligned_cols=33 Identities=24% Similarity=0.545 Sum_probs=26.2
Q ss_pred cCCCchhHHHHHHHHhhccCChhHHHHHHhhCC
Q 040643 244 GFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ 276 (968)
Q Consensus 244 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~ 276 (968)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.36 E-value=7.3e-06 Score=86.00 Aligned_cols=246 Identities=11% Similarity=0.037 Sum_probs=121.8
Q ss_pred HHHcCCHHHHHHHHHhCCCC----CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 540 YARCGRIQEAYLVFNKIDAK----DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 540 y~k~g~~~~A~~~f~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
+.-.|.+..+..-.+ .... +.....-+..+|...|+++.++. +..... .|.......+...+....+-+..
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566666665444 1111 12233445566666676654442 222222 44444443333333322222222
Q ss_pred HHHHHHHHHhCCC-CChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040643 616 KQVHAMIIKTGYD-SETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM 694 (968)
Q Consensus 616 ~~~~~~~~~~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 694 (968)
..-+......... .+..+......+|...|++++|.+++... .+....-..+..|.+.++++.|.+.++.|.+ +.
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--ID 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cC
Confidence 2222111111111 22222223334455666666666666554 3344444455666666666666666666665 33
Q ss_pred CChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHH
Q 040643 695 PNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLL 772 (968)
Q Consensus 695 Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll 772 (968)
.|.+ ..-+..| .|.+..-...+.+|.-+|+++ .+.+++.+.+.+.
T Consensus 162 eD~~-l~qLa~a--------------------------------wv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 162 EDSI-LTQLAEA--------------------------------WVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CCHH-HHHHHHH--------------------------------HHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred CcHH-HHHHHHH--------------------------------HHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 3322 2222222 222222223455555555555 2345566666666
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc-chHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW-DCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~ 827 (968)
.++...|+++.|+...+.+++.+|.|+.+...+.-+....|+. +.+.+....++.
T Consensus 209 ~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 209 VCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6677778888888888888888888888888888888888888 445667776654
No 95
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=0.00036 Score=72.41 Aligned_cols=287 Identities=12% Similarity=0.062 Sum_probs=161.1
Q ss_pred cCChhhHHHHHHHhhhcCCcC-CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHH-hHHhhHHHhcCCHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQA-NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEAS-NSLITLYAKCGSIDDAK 651 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~y~k~g~~~~A~ 651 (968)
.++...|..++-.+.....-| |......+...+...|+..++...|+...-. .|+.... ....-.++..|+.++-.
T Consensus 209 ~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 209 NFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred hcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHH
Confidence 455555555555444433333 3344455555666677777777766665442 2221111 01111234455555555
Q ss_pred HHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.+-..+.. ....-|-.-........+++.|+.+-++.++ +.|+.+ .+..-..++...|.+++|.-.|+...
T Consensus 287 ~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~--~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq--- 361 (564)
T KOG1174|consen 287 ALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCID--SEPRNHEALILKGRLLIALERHTQAVIAFRTAQ--- 361 (564)
T ss_pred HHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhc--cCcccchHHHhccHHHHhccchHHHHHHHHHHH---
Confidence 54444332 1233344444445556777778887777777 666654 56666667777888888888887664
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHH--HHh-cCChhHHHHHHHHHHccCCCCcch
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSA--CRV-HKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~--~~~-~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+.|. .+.|.-++..|...|++.||.-+-+.. -+..++.+. +|+++ |.- -.--|.|+..+++.+.++|.-.++
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~L-tL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~A 440 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSL-TLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPA 440 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhh-hhhcceeeccCchhHHHHHHHHHhhhccCCccHHH
Confidence 45554 777888888888888888876554332 112222222 34432 322 122467777788888888887777
Q ss_pred HHHHHHHHhhcCCcchHHHH-HHHHHhCCCccCCcccEEEEcCEE-----------EEEecCCCCCcchHHHHHHHHHHH
Q 040643 802 YVLLSNIYAAAGKWDCRDQI-RQIMKDRGVKKEPGQSWIEVKNSI-----------HAFFVGDRLHPLADKIYDYLGNLN 869 (968)
Q Consensus 802 ~~~l~~~y~~~g~~~~a~~~-~~~m~~~g~~k~~g~s~i~~~~~~-----------~~f~~~d~~h~~~~~i~~~l~~l~ 869 (968)
-+.++.++...|+.+++..+ ++.++ -.|.|+.-.+-|+| --|...=+..|+.+.-.+-|+.|+
T Consensus 441 V~~~AEL~~~Eg~~~D~i~LLe~~L~-----~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lE 515 (564)
T KOG1174|consen 441 VNLIAELCQVEGPTKDIIKLLEKHLI-----IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLE 515 (564)
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHh-----hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 78888888888888877775 33332 23443321111110 011122234577777777788887
Q ss_pred HHHH
Q 040643 870 RRVA 873 (968)
Q Consensus 870 ~~~~ 873 (968)
++++
T Consensus 516 K~~~ 519 (564)
T KOG1174|consen 516 KSDD 519 (564)
T ss_pred hccC
Confidence 7776
No 96
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.36 E-value=2e-05 Score=82.69 Aligned_cols=212 Identities=13% Similarity=0.119 Sum_probs=118.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhc-CChhhHHHHHHHhhhcCCcCCcchH-HHHHHHHhhhhhHH
Q 040643 536 LISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQS-GYCEGALQVFSQMTQVGVQANLYTF-GSVVSAAANLANIK 613 (968)
Q Consensus 536 Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~-~~ll~a~~~~~~~~ 613 (968)
+..+|...|+.+.+..-...-..+.......+ ..|... ++-+.++.-+++.......++..++ ......+...|+++
T Consensus 41 ~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~l-a~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~ 119 (290)
T PF04733_consen 41 QYRSYIALGQYDSVLSEIKKSSSPELQAVRLL-AEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYE 119 (290)
T ss_dssp HHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHH-HHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHH
T ss_pred HHHHHHHcCChhHHHHHhccCCChhHHHHHHH-HHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHH
Confidence 45556666666655444433333333333333 333333 4455666666555544433222222 22223455678888
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCHHHHHHHHHHH----HhcCCHHHHHHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KNEVSWNAMITGF----SQHGYALEAINLFEK 687 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~----~~~g~~~~A~~l~~~ 687 (968)
.|.+++... .+.......|..|.+.++++.|.+.++.|.+ .|.+ ...+..++ .-.+.+.+|..+|++
T Consensus 120 ~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~E 192 (290)
T PF04733_consen 120 EALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEE 192 (290)
T ss_dssp HHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 888775421 3556667788999999999999999999874 3332 22233322 223468999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh-HHHHHHHHhC
Q 040643 688 MKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL-SRAREFTEQM 759 (968)
Q Consensus 688 m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~-~eA~~~~~~m 759 (968)
+.+. ..|+..+.+++..++.+.|++++|.+.+.+.. ...|+ +++...++-+..-.|+. +.+.+++.++
T Consensus 193 l~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al---~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 193 LSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL---EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC---CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 8764 45677788888888888999999988877653 23343 33344444444444444 3344444444
No 97
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.35 E-value=0.00015 Score=81.87 Aligned_cols=281 Identities=13% Similarity=0.104 Sum_probs=165.9
Q ss_pred HHHHHcCCHHHHHHHHHhCCCC--CcccH-HHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh----h--
Q 040643 538 SLYARCGRIQEAYLVFNKIDAK--DNISW-NGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA----N-- 608 (968)
Q Consensus 538 ~~y~k~g~~~~A~~~f~~m~~~--d~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~----~-- 608 (968)
..+...|+.++|.+.++.-... |..+| ......+.+.|+.++|..+++.+.+. .|+...|-..+..|. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4456778888888887664432 44443 34456677778888888888888766 577777766666554 1
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHH-HHHHHHhcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSID-DAKREFLEMPEKNE-VSWNAMITGFSQHGYALEAINLFE 686 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~-~A~~~f~~~~~~d~-~~~~~li~~~~~~g~~~~A~~l~~ 686 (968)
....+.-.+++..+...- |.......+.-.+..-..+. .+...+..+..+.+ .+++.+-.-|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123555566666554432 11111111111111111222 22333333344443 345555555554444444455555
Q ss_pred HHHHC----C----------CCCCh--HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh
Q 040643 687 KMKKH----D----------VMPNH--VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL 749 (968)
Q Consensus 687 ~m~~~----g----------~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~ 749 (968)
..... | -.|.. .|+..+...+.+.|++++|+++.+... ..+|+ ++.|..-..+|-++|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCH
Confidence 54432 1 11222 244555666778899999999888664 44787 78888888888899999
Q ss_pred HHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCC--CC-------cchHHHHHHHHhhcCCcchH
Q 040643 750 SRAREFTEQM-PIEPDAMVWRTLL-SACRVHKNMEIGEYAANHLLELEP--ED-------SATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p--~~-------~~~~~~l~~~y~~~g~~~~a 818 (968)
++|.+.++.. .+.+...-.++-. ..+-..|+++.|+..+.....-+- .. .-..+--+..|.+.|+|..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9998888887 5555544444433 345677888888888887766552 11 11223457788999999888
Q ss_pred HHHHHHH
Q 040643 819 DQIRQIM 825 (968)
Q Consensus 819 ~~~~~~m 825 (968)
.+-....
T Consensus 325 Lk~~~~v 331 (517)
T PF12569_consen 325 LKRFHAV 331 (517)
T ss_pred HHHHHHH
Confidence 7754443
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.34 E-value=0.00014 Score=80.69 Aligned_cols=288 Identities=11% Similarity=-0.050 Sum_probs=158.7
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCC---CCCccc---HHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc-hHHHHHHHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKID---AKDNIS---WNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY-TFGSVVSAA 606 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~---~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~a~ 606 (968)
..+...|...|+.+++.+.+.... ..+... .......+...|++++|.+++++..+. .|+.. .+.. ...+
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~~~ 86 (355)
T cd05804 10 AAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HLGA 86 (355)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hHHH
Confidence 334445555566665544444322 112111 222233456678888888888877665 34433 2221 1112
Q ss_pred hh----hhhHHHHHHHHHHHHHhCCCC-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH
Q 040643 607 AN----LANIKQGKQVHAMIIKTGYDS-ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA 678 (968)
Q Consensus 607 ~~----~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~ 678 (968)
.. .+....+.+.... .....| .......+...+...|++++|.+.+++.. +.+...+..+...|...|+.
T Consensus 87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~ 164 (355)
T cd05804 87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF 164 (355)
T ss_pred HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 22 2333444433332 111122 23344455667788888888888888765 33566778888888888888
Q ss_pred HHHHHHHHHHHHCCC-CCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-ch--HHHHHHHHhhcCChHHH
Q 040643 679 LEAINLFEKMKKHDV-MPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EH--YACVVDLLGRAGCLSRA 752 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~-~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~--y~~lv~~l~r~G~~~eA 752 (968)
++|+..+++.....- .|+.. .+..+...+...|++++|..+++.........+.. +. ...+...+...|..+.+
T Consensus 165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~ 244 (355)
T cd05804 165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG 244 (355)
T ss_pred HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence 888888888876321 12321 34456677788888888888888764321111111 11 11223333444433333
Q ss_pred HHH---HHhC-CCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC---------CCcchHHHHHHHHhhcCCcc
Q 040643 753 REF---TEQM-PIEP---DAMVWRTLLSACRVHKNMEIGEYAANHLLELEP---------EDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 753 ~~~---~~~m-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p---------~~~~~~~~l~~~y~~~g~~~ 816 (968)
... ...- +..| ..........++...|+.+.|....+.+....- ......++.+.++...|+++
T Consensus 245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~ 324 (355)
T cd05804 245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA 324 (355)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence 322 1111 1111 122223445556677888888888777655321 24566788999999999999
Q ss_pred hHHHHHHHHH
Q 040643 817 CRDQIRQIMK 826 (968)
Q Consensus 817 ~a~~~~~~m~ 826 (968)
+|.+......
T Consensus 325 ~A~~~L~~al 334 (355)
T cd05804 325 TALELLGPVR 334 (355)
T ss_pred HHHHHHHHHH
Confidence 9988644443
No 99
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.30 E-value=0.0062 Score=65.91 Aligned_cols=176 Identities=13% Similarity=0.070 Sum_probs=133.0
Q ss_pred hhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC-ChhHHhHHhhHHHhcCCHHHHHHHHh
Q 040643 577 CEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDS-ETEASNSLITLYAKCGSIDDAKREFL 655 (968)
Q Consensus 577 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~k~g~~~~A~~~f~ 655 (968)
.+.....++++...-..--..+|...++...+..-++.|+.+|..+.+.+..+ +++++++++.-|+ .++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 44455566665553322234567788888888888999999999999877766 8899999999777 478889999998
Q ss_pred cCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHcccCcHHHHHHHHHHhhhhcC--
Q 040643 656 EMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH--VTFVGVLSACSHVGLVNEGLRYFESMSTEYG-- 728 (968)
Q Consensus 656 ~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 728 (968)
.-. ..++.--+..+.-+..-|+-..|..+|++.+..++.||. ..|...|.-=+.-|+.....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 654 224445566777778888889999999999998888874 4788999988899999999988888877776
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHH
Q 040643 729 LVPKPEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 729 i~p~~~~y~~lv~~l~r~G~~~eA~ 753 (968)
..|...+-..++|.|+=.+....-.
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~~c~~ 530 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLYPCSL 530 (656)
T ss_pred hcCCCChHHHHHHHHhhcccccccH
Confidence 6666667777788777666554333
No 100
>PF12854 PPR_1: PPR repeat
Probab=98.27 E-value=1.1e-06 Score=58.38 Aligned_cols=32 Identities=25% Similarity=0.524 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 692 DVMPNHVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 692 g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
|+.||.+||+.|+.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444443
No 101
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.26 E-value=0.00057 Score=75.73 Aligned_cols=265 Identities=14% Similarity=0.066 Sum_probs=171.6
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcC-CcCCcchHHHH-HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHh---
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVG-VQANLYTFGSV-VSAAANLANIKQGKQVHAMIIKTGYDSETEASN--- 635 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~l-l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--- 635 (968)
...|..+...+...|+.+++.+.+.+..+.. ..++......+ ...+...|+.+++..++..+.+.. +.+...++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 3456667777777788888776666655432 12232222222 223456789999999999888763 34444444
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccC
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVG 711 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g 711 (968)
.+.......|..+.+.+.++.... | +...+..+...+...|++++|++.+++..+ ..|+. ..+..+..++...|
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcC
Confidence 222333345667777777765332 2 234555666788999999999999999999 66764 56777888999999
Q ss_pred cHHHHHHHHHHhhhhcCCCCCc--chHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHH----HHHHHHHhcCChh
Q 040643 712 LVNEGLRYFESMSTEYGLVPKP--EHYACVVDLLGRAGCLSRAREFTEQM-PIEP--DAMVWR----TLLSACRVHKNME 782 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p--~~~~~~----~ll~~~~~~g~~~ 782 (968)
++++|..+++.........|.. ..|..+...+...|++++|.+.+++. ...| ...... .++.-....|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 9999999999876543222332 23557889999999999999999986 2233 222221 3344456667665
Q ss_pred HHHHH---HHHHHccCCC--CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 783 IGEYA---ANHLLELEPE--DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 783 ~a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.+.+. +.....-.|. ....-...+.++...|++++|.+..+.++..
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 55554 3332221122 1222235677888999999999988887653
No 102
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.26 E-value=0.00035 Score=70.69 Aligned_cols=207 Identities=10% Similarity=0.113 Sum_probs=120.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH---HhhcccchhhhhhhhHhhhhhcCCCCchhh-hhHHHHHH
Q 040643 466 MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAIS---ACAGIQALNQGRQIHAQSYISGFSDDLSIG-NALISLYA 541 (968)
Q Consensus 466 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~---a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~-~~Li~~y~ 541 (968)
+-..+...|++..|+.-|...++. |...|.++.+ .|...|....|.+=+..+++. .||.... ---...+.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 455667788889999988887663 3333433332 334444444444444444443 2332111 11123455
Q ss_pred HcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHH
Q 040643 542 RCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAM 621 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~ 621 (968)
|.|.++.|..-|+.+.+.+.. -+.-..++.+ +.+.+++. .....+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s-~~~~~eaqsk-------l~~~~e~~---------~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPS-NGLVLEAQSK-------LALIQEHW---------VLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCC-cchhHHHHHH-------HHhHHHHH---------HHHHHHHHHhcCCchhhHHHHHHH
Confidence 677777777777666543221 0001111111 11111111 122233344556777777777777
Q ss_pred HHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 040643 622 IIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698 (968)
Q Consensus 622 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 698 (968)
+++.. +.|...+..-.+.|...|.+..|+.-+.... ..|....--+-..+.+-|+.+.++....+.++ +.||+-
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 76643 4577778888888889999988877665443 55666666777778888999999998888888 788864
No 103
>PLN02789 farnesyltranstransferase
Probab=98.24 E-value=0.00011 Score=78.12 Aligned_cols=168 Identities=11% Similarity=0.086 Sum_probs=106.9
Q ss_pred HHHhcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc
Q 040643 640 LYAKCG-SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA--LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL 712 (968)
Q Consensus 640 ~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~ 712 (968)
++.+.| .+++|...++++. .++..+|+-....+.+.|.. ++++.+++++++ ..|+ ..+|.....++.+.|+
T Consensus 80 iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~ 157 (320)
T PLN02789 80 CLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGG 157 (320)
T ss_pred HHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhh
Confidence 333444 4566666666544 33455566554444444542 556667777766 5564 4466666666667777
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc---CC----hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC---
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA---GC----LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK--- 779 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~---G~----~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g--- 779 (968)
+++++++++.+.+. .|+ ...|.-...++.+. |. ++++.++++++ ...|+ ...|..+.+.+..++
T Consensus 158 ~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 158 WEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred HHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 77777777766543 233 33344333333333 22 24677777444 66776 889999988887743
Q ss_pred -ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 780 -NMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 780 -~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+...+......+++.+|.++.++..|+.+|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 446688888999999999999999999999864
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.20 E-value=5.3e-05 Score=82.22 Aligned_cols=190 Identities=14% Similarity=0.142 Sum_probs=133.8
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCC-----c---CCcch
Q 040643 530 LSIGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGV-----Q---ANLYT 598 (968)
Q Consensus 530 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~---p~~~t 598 (968)
...|.-|...-+..++-..|...+.+.. ..|....-+|.-.|...|.-.+|++.++.-..... . ++..+
T Consensus 319 aeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~ 398 (579)
T KOG1125|consen 319 AEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDF 398 (579)
T ss_pred HHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccc
Confidence 3444445555555555555665555443 33555666677778888888888888777644321 0 01110
Q ss_pred HHHHHHHHhhhhhHHHHHHHH-HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHh
Q 040643 599 FGSVVSAAANLANIKQGKQVH-AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQ 674 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~-~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~ 674 (968)
-.. ........+....++| +.....+...|+.+...|.-.|--.|.+++|...|+... +| |...||-|...++.
T Consensus 399 ~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 399 ENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 000 1222333444455554 444456656888899999999999999999999999876 44 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
..+.++|++.|.+.++ ++|+.+ ....|.-.|...|.++||.++|-+.
T Consensus 477 ~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred CcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 9999999999999999 999966 6677888999999999999988654
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.20 E-value=0.0001 Score=86.54 Aligned_cols=124 Identities=15% Similarity=0.072 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 040643 696 NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLL 772 (968)
Q Consensus 696 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll 772 (968)
+...+..|..+..+.|..++|..+++... .+.|+ ......++..|.+.++++||+..+++. +..|+ ......+.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~---~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a 161 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIH---QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEA 161 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHH---hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 34455566666666666666666666553 34565 444555666677777777777777665 56666 33334444
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
.++...|..+.|..++++++..+|+++.+++.+++.+-..|+.++|....
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~ 211 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVL 211 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 44566777777777777777777777777777777777777777776643
No 106
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=2.6e-05 Score=84.46 Aligned_cols=209 Identities=15% Similarity=0.158 Sum_probs=155.0
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLF 685 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~ 685 (968)
.|++.+|.-.++..++.. +-+...|--|...-+..++=..|+..+.+.. ..|.....+|...|...|.-.+|++.+
T Consensus 298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 344555555555555432 3345566666666666666666666666654 346777788888888888888898888
Q ss_pred HHHHHCCCCCChH---------HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHH
Q 040643 686 EKMKKHDVMPNHV---------TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFT 756 (968)
Q Consensus 686 ~~m~~~g~~Pd~~---------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~ 756 (968)
+.-+.. +|-.+ .+..- +...+......-.++|-.+....+.+++++.+.+|.-+|.-.|.+++|.+.|
T Consensus 377 ~~Wi~~--~p~y~~l~~a~~~~~~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 377 DKWIRN--KPKYVHLVSAGENEDFENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHh--CccchhccccCccccccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 887652 22110 00000 1223334455667778777777777788899999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 757 EQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 757 ~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+.. ..+|+ ...|+-|-.....-...+.|..++.++++|.|.-.-..+.|+-.|...|-++||.+.
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 987 77886 889998888888888899999999999999999999999999999999999999884
No 107
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.18 E-value=0.0003 Score=79.54 Aligned_cols=283 Identities=13% Similarity=0.086 Sum_probs=153.4
Q ss_pred HHHhhCChHHHHHHHhhCCC--CCcee-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc------
Q 040643 438 IHTQLGNLNTAQEILRRLPE--DDVVS-WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGI------ 508 (968)
Q Consensus 438 ~~~~~~~~~~a~~~~~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~------ 508 (968)
++...|+.++|.+.+..... .|..+ .......+.+.|+.++|...|+.+++. .||...|-..+..|...
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhccccc
Confidence 34455788888887766442 34333 445677888899999999999999885 58888776666665511
Q ss_pred cchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCH-HHHHHHHHhCCCCCcc-cHHHHHHHHHhcCChhhHHHHHHH
Q 040643 509 QALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRI-QEAYLVFNKIDAKDNI-SWNGLISGFAQSGYCEGALQVFSQ 586 (968)
Q Consensus 509 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~m~~~d~~-~~~~li~~~~~~g~~~~A~~l~~~ 586 (968)
.+.+.-.+++..+...-+..+..-. +.-.+..-..+ ..+...+..+..+.+. +++.+-.-|......+-..+++..
T Consensus 91 ~~~~~~~~~y~~l~~~yp~s~~~~r--l~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKYPRSDAPRR--LPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccHHHHHHHHHHHHHhCccccchhH--hhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 2345555666655444322111111 10001110111 1222333333444443 355555555544444434444444
Q ss_pred hhhc----CC----------cCCc--chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 587 MTQV----GV----------QANL--YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 587 m~~~----g~----------~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.... +- .|.. .++..+-..+...|+.++|.++.+.++++. +..+..|..-...|-+.|++++|
T Consensus 169 ~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~A 247 (517)
T PF12569_consen 169 YVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEA 247 (517)
T ss_pred HHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHH
Confidence 3321 11 1222 123333444556677777777777666653 22355666666667777777777
Q ss_pred HHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH------H--HHHHHHHHcccCcHHHHHHH
Q 040643 651 KREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV------T--FVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 651 ~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~------t--~~~ll~a~~~~g~~~~a~~~ 719 (968)
.+..+.... .|-..-+-.+..+.+.|+.++|.+++......+..|-.. . .+-...+|.+.|++..|++.
T Consensus 248 a~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 248 AEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred HHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 777666553 244444555566667777777777777766655444221 1 12334466667777777666
Q ss_pred HHHhhh
Q 040643 720 FESMST 725 (968)
Q Consensus 720 ~~~m~~ 725 (968)
|....+
T Consensus 328 ~~~v~k 333 (517)
T PF12569_consen 328 FHAVLK 333 (517)
T ss_pred HHHHHH
Confidence 665544
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.17 E-value=8.3e-05 Score=73.66 Aligned_cols=116 Identities=12% Similarity=0.079 Sum_probs=84.3
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCC--hhH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSA-CRVHKN--MEI 783 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~-~~~~g~--~~~ 783 (968)
.+..+++...++...+ ..|+ .+.|..+..+|...|++++|.+.+++. .+.|+ ..+|..+..+ +...|+ .+.
T Consensus 52 ~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 4555566655554433 2444 666777777777788888887777776 55664 6666666665 356666 488
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
|..+.+++++++|+++.++..|+..|...|++++|....+.+.+.
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 888889999999999999999999999999999998887777553
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.17 E-value=3.3e-05 Score=85.80 Aligned_cols=230 Identities=15% Similarity=0.119 Sum_probs=148.3
Q ss_pred cCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHH
Q 040643 525 GFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS 604 (968)
Q Consensus 525 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 604 (968)
+++|-..+...+...+.++|-..+|..+|++. ..|--.|.+|...|+..+|..+..+-.+. +||...|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 45566666778899999999999999999976 46888899999999999998888777652 555555555444
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 605 AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 605 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
..-+..- +++|.++++....+--.+|+-. ...+++++++.+.
T Consensus 466 v~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~---~~~~~~fs~~~~h 507 (777)
T KOG1128|consen 466 VLHDPSL-----------------------------------YEKAWELSNYISARAQRSLALL---ILSNKDFSEADKH 507 (777)
T ss_pred hccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhccc---cccchhHHHHHHH
Confidence 4433333 4444444444332211122111 1225666777777
Q ss_pred HHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC
Q 040643 685 FEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PI 761 (968)
Q Consensus 685 ~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~ 761 (968)
|+.-.+ +.|= .-||..+..+..+.++++.+.+.|..-. ...|+ .+.|+.+.-+|.+.|+..+|...+++. ..
T Consensus 508 le~sl~--~nplq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc 582 (777)
T KOG1128|consen 508 LERSLE--INPLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC 582 (777)
T ss_pred HHHHhh--cCccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc
Confidence 766665 5554 3466666666667777777777776553 33555 556666666666666666666666555 22
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 762 -EPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 762 -~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
.-+..+|...+-....-|+.+.|.+++.+++++.-.....-++
T Consensus 583 n~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl 626 (777)
T KOG1128|consen 583 NYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL 626 (777)
T ss_pred CCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence 2346678888888888888888888888888775443333333
No 110
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.16 E-value=0.024 Score=71.52 Aligned_cols=325 Identities=10% Similarity=-0.020 Sum_probs=154.1
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCC------CC--chhhhhHHHHHH
Q 040643 470 FVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFS------DD--LSIGNALISLYA 541 (968)
Q Consensus 470 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~------~~--~~~~~~Li~~y~ 541 (968)
....|+++.+..+++.+.......+..........+...++++.+......+...--. +. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345666665555555422111111111222223334556666666666554332110 01 111122334455
Q ss_pred HcCCHHHHHHHHHhCCC----CCc----ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc---C--CcchHHHHHHHHhh
Q 040643 542 RCGRIQEAYLVFNKIDA----KDN----ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ---A--NLYTFGSVVSAAAN 608 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~----~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---p--~~~t~~~ll~a~~~ 608 (968)
..|++++|...+++... .+. ..++.+...+...|++++|...+.+.....-. + -..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 67777777776665321 121 23344555566677777777777666532111 1 11223333445566
Q ss_pred hhhHHHHHHHHHHHHH----hCCCC---ChhHHhHHhhHHHhcCCHHHHHHHHhcCCC------C--CHHHHHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIK----TGYDS---ETEASNSLITLYAKCGSIDDAKREFLEMPE------K--NEVSWNAMITGFS 673 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~----~g~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~~~------~--d~~~~~~li~~~~ 673 (968)
.|+++.|...+..... .+... ....+..+...+...|++++|...+.+... + ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 6777777776655443 12111 122233444455556777777666665421 1 1223444555666
Q ss_pred hcCCHHHHHHHHHHHHHCCC-CCChHHHH-----HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch-----HHHHHHH
Q 040643 674 QHGYALEAINLFEKMKKHDV-MPNHVTFV-----GVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH-----YACVVDL 742 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~-~Pd~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~-----y~~lv~~ 742 (968)
..|+.++|.+.+++.....- ......+. ..+..+...|..+++.+++...... .+...+ +..+..+
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~---~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP---EFANNHFLQGQWRNIARA 700 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC---CCccchhHHHHHHHHHHH
Confidence 67777777777666643110 00111010 0112333466677777666554221 111111 2344555
Q ss_pred HhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 743 LGRAGCLSRAREFTEQM-------PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+.+.|+.++|...+++. +..++ ..+...+..++...|+.+.|....++++++...
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 66667777766666554 11122 223333344456666777777777766666543
No 111
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=0.0011 Score=71.57 Aligned_cols=212 Identities=13% Similarity=0.111 Sum_probs=137.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHH----------HHHHHHH
Q 040643 601 SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEV----------SWNAMIT 670 (968)
Q Consensus 601 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~----------~~~~li~ 670 (968)
.+.++.-+..++..+.+-+...+... .++.-++.....|...|...+....-+...+..-. +..-+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444444555666666666665543 45555566666777777666665554443322111 1222444
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc--chHHHHHHHHhhcCC
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP--EHYACVVDLLGRAGC 748 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~G~ 748 (968)
+|.+.++++.|+..|++.+..-..||..+ .....+++.+..+.. --+.|.. +--.+ ...+.+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~---a~~~pe~A~e~r~k-Gne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERK---AYINPEKAEEEREK-GNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHH---HhhChhHHHHHHHH-HHHHHhccC
Confidence 66667788888888888776555554321 222334444443322 1234442 11222 566778899
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 749 LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+.+|..-+.++ ...|+ +..|.....++-..|++..|..-+++.++++|+....|..-+-++....+|++|.+....-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887 55676 67777777777888999999999999999999999999999999999999999988776544
Q ss_pred h
Q 040643 827 D 827 (968)
Q Consensus 827 ~ 827 (968)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 3
No 112
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=0.0018 Score=70.17 Aligned_cols=173 Identities=14% Similarity=0.111 Sum_probs=124.9
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE--KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLV 713 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~ 713 (968)
+...|.+.++.+.|...|.+... ++... ..+....+++++..+...- +.|+.. -.-.-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 45578888999999999888552 22111 1233445666666666555 667643 244447788899999
Q ss_pred HHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 714 NEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
.+|...+.++.+. .|+ ...|+.-.-+|.+.|.+.+|++-.+.. ...|+ ...|.--..+.+...+++.|..++++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998754 465 788999999999999999988766554 55666 44554555556777899999999999
Q ss_pred HHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 791 LLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
.++++|++...-..+...+.....-+...++
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~~~~~~~ee~ 482 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQRGDETPEET 482 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHhhcCCCHHHH
Confidence 9999999999988888888775444444443
No 113
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.08 E-value=5.1e-06 Score=56.16 Aligned_cols=35 Identities=31% Similarity=0.646 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~ 697 (968)
++||+||.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
No 114
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.08 E-value=0.00016 Score=85.84 Aligned_cols=216 Identities=11% Similarity=0.093 Sum_probs=178.0
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMPEK--------NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV- 698 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~- 698 (968)
+.+...|-..+......+++++|++++++.... -...|.++++.-...|.-+...++|+++.+ --|+.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq---ycd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ---YCDAYT 1531 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH---hcchHH
Confidence 445667888888888999999999999987621 245899999999999999999999999997 33544
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPDAMVWRTLLSA 774 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~~~~~~~ll~~ 774 (968)
.|..|+.-|...+.+++|-++|+.|.++++ -....|...++.|.|..+-++|.++++++ |-.-......-.+.-
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence 588999999999999999999999999988 55677899999999999999999998876 333345666666667
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCC
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRL 854 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~ 854 (968)
-.++||.|+|..+++-++.-.|.....|..+..+-.+.|.-+.++.+.++.-..++.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~----------------------- 1666 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS----------------------- 1666 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----------------------
Confidence 789999999999999999999999999999999888999999999998887765542
Q ss_pred CcchHHHHHHHHHHHHH
Q 040643 855 HPLADKIYDYLGNLNRR 871 (968)
Q Consensus 855 h~~~~~i~~~l~~l~~~ 871 (968)
--+++..|.+|-+.+++
T Consensus 1667 ~kkmKfffKkwLeyEk~ 1683 (1710)
T KOG1070|consen 1667 IKKMKFFFKKWLEYEKS 1683 (1710)
T ss_pred hhHhHHHHHHHHHHHHh
Confidence 12466777777666554
No 115
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.08 E-value=0.00012 Score=72.43 Aligned_cols=154 Identities=12% Similarity=0.147 Sum_probs=107.5
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
-.|.+.|+++....-.+.+..|. ..|...++.++++..+++.++ ..|+ ...|..+...+...|++++|.
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45667777666544433222111 011235566777777777777 5665 446777777888888888888
Q ss_pred HHHHHhhhhcCCCCC-cchHHHHHHHH-hhcCC--hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 718 RYFESMSTEYGLVPK-PEHYACVVDLL-GRAGC--LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 718 ~~~~~m~~~~~i~p~-~~~y~~lv~~l-~r~G~--~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
..|+... .+.|+ ...+..+..++ .+.|+ .++|.+++++. ...|+ ..++..|...+...|+++.|....+++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888664 44565 67777777754 67777 48888888887 56665 677777777789999999999999999
Q ss_pred HccCCCCcchHHHH
Q 040643 792 LELEPEDSATYVLL 805 (968)
Q Consensus 792 ~~l~p~~~~~~~~l 805 (968)
++++|.++.-+-.+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99999887666544
No 116
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.08 E-value=0.0011 Score=83.75 Aligned_cols=355 Identities=10% Similarity=-0.010 Sum_probs=212.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH----HhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAIS----ACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~----a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
...+...|++.+|+....... |......++. .....|..+........+-......+..........+..
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~------d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAG------DAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCC------CHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 344566677777666554431 2111112221 222334555544444433211122233333445556678
Q ss_pred cCCHHHHHHHHHhCC----CCC---c---c--cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc----chHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKID----AKD---N---I--SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL----YTFGSVVSAA 606 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~----~~d---~---~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~ll~a~ 606 (968)
.|+.++|...++... ..+ . . ....+...+...|++++|...+++....--..+. .....+-..+
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 899999988876542 111 1 1 1112234456789999999999987653111111 1233344456
Q ss_pred hhhhhHHHHHHHHHHHHHhCC---CC--ChhHHhHHhhHHHhcCCHHHHHHHHhcCCC-------C----CHHHHHHHHH
Q 040643 607 ANLANIKQGKQVHAMIIKTGY---DS--ETEASNSLITLYAKCGSIDDAKREFLEMPE-------K----NEVSWNAMIT 670 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~~-------~----d~~~~~~li~ 670 (968)
...|+++.|...+..+....- .+ .......+...+...|++++|...+++... + ....+..+..
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 678999999998877765211 11 123445566778889999999998776431 1 1233455566
Q ss_pred HHHhcCCHHHHHHHHHHHHHC--CCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchH-----HHHHH
Q 040643 671 GFSQHGYALEAINLFEKMKKH--DVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHY-----ACVVD 741 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~--g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y-----~~lv~ 741 (968)
.+...|++++|...+++.... ...|. ..++..+.......|+.++|...+...............+ .....
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 677789999999999987653 11232 2234445667788999999999998875432211111111 11224
Q ss_pred HHhhcCChHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHccCC------CCcchHHHHHHHH
Q 040643 742 LLGRAGCLSRAREFTEQMPI--EPDA----MVWRTLLSACRVHKNMEIGEYAANHLLELEP------EDSATYVLLSNIY 809 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m~~--~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y 809 (968)
.+...|+.++|.+++.+... .+.. ..+..+..+....|+.+.|...++++++... +....+..++.+|
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 45668999999999877621 1111 1234555567788999999999999888632 2334678899999
Q ss_pred hhcCCcchHHHHHHHHHh
Q 040643 810 AAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 810 ~~~g~~~~a~~~~~~m~~ 827 (968)
...|+.++|.......-+
T Consensus 742 ~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999886544433
No 117
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.06 E-value=0.00013 Score=75.25 Aligned_cols=180 Identities=14% Similarity=0.041 Sum_probs=124.6
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-C-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CH---HHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYD-S-ETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NE---VSWNA 667 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~---~~~~~ 667 (968)
...+......+...|+.+.|...+..+++..-. + ....+..+...|.+.|++++|...|+++. .| +. ..|..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 345666677788999999999999998875421 1 12456778889999999999999999886 23 22 25666
Q ss_pred HHHHHHhc--------CCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHH
Q 040643 668 MITGFSQH--------GYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC 738 (968)
Q Consensus 668 li~~~~~~--------g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 738 (968)
+..++... |+.++|++.|+++.+ ..|+.. ....+..... ... .. ..+...
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~----~~~------~~---------~~~~~~ 171 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDY----LRN------RL---------AGKELY 171 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHH----HHH------HH---------HHHHHH
Confidence 66666654 789999999999998 577753 2222211100 000 00 011235
Q ss_pred HHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 739 VVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
+.+.+.+.|++++|...+++. |-.|. ...|..+..++...|+.+.|....+.+....|
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 667788889999988887775 43443 56788888888889999999888777766555
No 118
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.01 E-value=7.8e-06 Score=55.22 Aligned_cols=35 Identities=31% Similarity=0.727 Sum_probs=33.0
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL 596 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 596 (968)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 48999999999999999999999999999999984
No 119
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=97.99 E-value=3.9e-05 Score=71.75 Aligned_cols=97 Identities=13% Similarity=-0.046 Sum_probs=85.7
Q ss_pred CCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 729 LVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 729 i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
+.|+ ++......+...|++++|.+.++.. ...|+ ..+|..+..+|...|+++.|...++++++++|+++..+..++
T Consensus 22 ~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg 99 (144)
T PRK15359 22 VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTG 99 (144)
T ss_pred cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 3555 4667888999999999999999987 56664 889999999999999999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHHHHHh
Q 040643 807 NIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+|...|++++|.........
T Consensus 100 ~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 100 VCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999997665543
No 120
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.96 E-value=9.1e-05 Score=67.96 Aligned_cols=117 Identities=9% Similarity=0.020 Sum_probs=96.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
.+..-.+...+...|++++|..+++-. -+.|. ..-|-.|...|+..|+++.|..+..+++.++|+|+.+|..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 555566777888899999999999887 56675 7889999999999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHH
Q 040643 811 AAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRV 872 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~ 872 (968)
..|+.++|.+-.+..... ++ .||+-.+|.++-+.....|
T Consensus 115 ~lG~~~~A~~aF~~Ai~~---------------------~~--~~~~~~~l~~~A~~~L~~l 153 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRI---------------------CG--EVSEHQILRQRAEKMLQQL 153 (157)
T ss_pred HcCCHHHHHHHHHHHHHH---------------------hc--cChhHHHHHHHHHHHHHHh
Confidence 999999999976654332 11 4577777777666555444
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=0.00052 Score=73.46 Aligned_cols=110 Identities=21% Similarity=0.220 Sum_probs=54.1
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~ 785 (968)
..|..++|+..++.+... .|+ +......++++.++|+.++|.+.++++ ...|+ ...|-++..++...|+...|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 344455555555544322 333 233333445555555555555555554 34444 444445555555555555555
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
...+....-+|+|+..|.+|+..|...|+-.++...
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 555555555555555555555554444444444433
No 122
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.91 E-value=0.0005 Score=80.80 Aligned_cols=136 Identities=9% Similarity=0.043 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
++..+-.|.....+.|..++|..+++...+ +.||.. .+..+..++.+.+.+++|+...++.. ...|+ ..+...
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 355566666677777777777777777777 677754 56666777777777777777777653 34565 666667
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
+..+|...|++++|.++|++. .-.|+ ..+|-++..+....|+.+.|..+++++++...+-+-.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 777777777777777777776 23344 6677777777777777777777777777776544433
No 123
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.91 E-value=0.00038 Score=77.69 Aligned_cols=195 Identities=13% Similarity=0.067 Sum_probs=124.9
Q ss_pred CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040643 626 GYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS 705 (968)
Q Consensus 626 g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 705 (968)
+++|-...-..+.+.+.++|-+.+|..+|++. ..|.-.|-+|...|+..+|..+..+-.+ -+||+.-|..++.
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 34555556667788888888888888888874 5677788888888888888888887777 5778888888888
Q ss_pred HHcccCcHHHHHHHHHHhhhh-------------------------cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 706 ACSHVGLVNEGLRYFESMSTE-------------------------YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~-------------------------~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
..-..-.+++|+++++..... ..+.|- ..+|-...-+..+.++.+.|.+.|...
T Consensus 466 v~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc 545 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC 545 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence 777777777777777654222 011111 223333333344455555555555444
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 760 -PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 760 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+|| ...|++|-.++-++|+..+|-+..+.+++-+-++...+....-+-.+.|.|++|.+....|.+
T Consensus 546 vtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 546 VTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred hhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 45565 566666666666666666666666666666655555444444445566666666666555543
No 124
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.89 E-value=0.0011 Score=78.88 Aligned_cols=226 Identities=16% Similarity=0.217 Sum_probs=153.7
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-----chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-----YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASN 635 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 635 (968)
.+.|-..|+-..+.++.++|.+++++.+.. +.+.. ..|.++++.--.-|.-+...++|+.+.+.. ....+|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 456777777777778888888877776543 22211 234444444444455566667777766642 2345778
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHH-HHcc
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPEK---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLS-ACSH 709 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~-a~~~ 709 (968)
.|...|.+.+..++|.++++.|.++ ....|...+..+.++.+.+.|.+++.+.++ .-|- ++-|.+... .-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhh
Confidence 8888888888888888888888743 566888888888888888888888888887 4554 554444332 3456
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a 784 (968)
.|+-+.|+.+|+.....| +-..+.|+..+|+=.+.|..+.+..+|++. .+.|. -..+.-.|..-..|||-+..
T Consensus 1613 ~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred cCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 788888888888776653 233667888888888888888888888876 34443 45666667777777776666
Q ss_pred HHHHHHHHc
Q 040643 785 EYAANHLLE 793 (968)
Q Consensus 785 ~~~~~~~~~ 793 (968)
+.+-.++.|
T Consensus 1691 E~VKarA~E 1699 (1710)
T KOG1070|consen 1691 EYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHH
Confidence 666555544
No 125
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.89 E-value=0.00081 Score=79.70 Aligned_cols=148 Identities=9% Similarity=0.140 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
.+-.+..+|.+.|+.++|...++++++ +.|+ ....+.+...++.. ++++|.+++.+....
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~--~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------- 178 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVK--ADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------- 178 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH----------------
Confidence 455566666666666666666666666 4454 33556666666666 666666666655332
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC---------------------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD---------------------AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~---------------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
+...+++.++.+++.++ ...|+ ..+|.-|-.-++..++++.+..+.+++++.+|.|..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~ 258 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNK 258 (906)
T ss_pred HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchh
Confidence 33333444555544444 22222 333444446678888999999999999999999999
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHHhCCCcc
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKK 832 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k 832 (968)
+..-|+..|. +++.+-..+-+.++-.|+..
T Consensus 259 a~~~l~~~y~--~kY~~~~~~ee~l~~s~l~~ 288 (906)
T PRK14720 259 AREELIRFYK--EKYKDHSLLEDYLKMSDIGN 288 (906)
T ss_pred hHHHHHHHHH--HHccCcchHHHHHHHhcccc
Confidence 9999998888 77777666666666666543
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.89 E-value=0.097 Score=60.61 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=89.1
Q ss_pred HHHHHHHhhhhhHHHHHH---HHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC----CHHHHHHHHHHH
Q 040643 600 GSVVSAAANLANIKQGKQ---VHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK----NEVSWNAMITGF 672 (968)
Q Consensus 600 ~~ll~a~~~~~~~~~a~~---~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~----d~~~~~~li~~~ 672 (968)
+.++..|-+.++.....+ +++...... +.|..+--.||..|+--|-+..|.++|+.+.-+ |...|- +..-+
T Consensus 440 ~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~ 517 (932)
T KOG2053|consen 440 NHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRA 517 (932)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHH
Confidence 356667776666553332 333222211 334455567889999999999999999998744 333332 23344
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHcccCcHHHHH---HHHHHhhhhcCCCCCcchHHHHHHHHhhcC
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNH--VTFVGVLSACSHVGLVNEGL---RYFESMSTEYGLVPKPEHYACVVDLLGRAG 747 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~---~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G 747 (968)
...|++..+...+++..+ +--+. .|--.+..||.+ |.+.+-. .+-+.|.... -.-....=+...+.+..++
T Consensus 518 ~t~g~~~~~s~~~~~~lk--fy~~~~kE~~eyI~~AYr~-g~ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~ 593 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHLK--FYDSSLKETPEYIALAYRR-GAYSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNAD 593 (932)
T ss_pred HhcccchhHHHHHHHHHH--HHhhhhhhhHHHHHHHHHc-CchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCC
Confidence 556677777666666554 11111 122233334433 3333322 2222221110 0000112234567888999
Q ss_pred ChHHHHHHHHhCCCCC--CHHHHHHH
Q 040643 748 CLSRAREFTEQMPIEP--DAMVWRTL 771 (968)
Q Consensus 748 ~~~eA~~~~~~m~~~p--~~~~~~~l 771 (968)
+.++-...+..|.++| |..-|..|
T Consensus 594 ~~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 594 RGTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred cHHHHHHHHhccccCcchhhcccccc
Confidence 9999999998886554 34555544
No 127
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.88 E-value=0.003 Score=64.17 Aligned_cols=249 Identities=15% Similarity=0.135 Sum_probs=177.9
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccC
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPEKNEVSWNAM---ITGFSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVG 711 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g 711 (968)
-|...+.-.|++.+|..-|....+-|+..|-++ ...|...|+..-|+.-|.+.++ ++||-. .-.--...+.++|
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhcc
Confidence 345556667889999999988887777766665 4568888999999999999998 899854 3444455677899
Q ss_pred cHHHHHHHHHHhhhhcCCCCC----cchHHH------------HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPK----PEHYAC------------VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLS 773 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~----~~~y~~------------lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~ 773 (968)
.+++|..=|+..... .|+ .+++.- ++.-+.-.|+...|.+++..+ .+.|= +..+..-..
T Consensus 121 ele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rak 197 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAK 197 (504)
T ss_pred cHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHH
Confidence 999999999877543 442 233322 223345578999999999987 56664 444444445
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH-HHHHHHhCCCccCCcccEEEEcCEEEEEecCC
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ-IRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGD 852 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 852 (968)
++...|++..|+.-.+.+-+|..+|...++-+|.+|+..|..+++.. +|+-+|- |
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl------------------------d 253 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL------------------------D 253 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc------------------------C
Confidence 56678899999999999999999999999999999999999998876 5665542 3
Q ss_pred CCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCC-CCEEEecccccCC
Q 040643 853 RLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDS-MPILVIKNLRVCN 929 (968)
Q Consensus 853 ~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~-~~~~~~kn~r~c~ 929 (968)
..|...---|.+|..+.+.+..+-- -+ |+ ....|-|+-.=.++.+.|. ++||+----++|.
T Consensus 254 pdHK~Cf~~YKklkKv~K~les~e~---------~i--e~-----~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 254 PDHKLCFPFYKKLKKVVKSLESAEQ---------AI--EE-----KHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHH---------HH--hh-----hhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 4566666667777777666543210 00 11 1235667777778888777 8898876666664
No 128
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.87 E-value=0.0007 Score=66.78 Aligned_cols=134 Identities=16% Similarity=0.109 Sum_probs=102.1
Q ss_pred CCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHH
Q 040643 693 VMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRT 770 (968)
Q Consensus 693 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ 770 (968)
..|+......+-.++...|+-+.+..+.......+ .-+.+.....+....+.|++.+|...+++. +-.||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 45643322666667778888888887777653321 112334444788888999999999998887 45567888888
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+..+|-..|+.+.|...+.+++++.|.++.++..|+-.|.-.|+.++|..+.......
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 8888999999999999999999999999999999999999999999998876655543
No 129
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.86 E-value=0.0065 Score=60.58 Aligned_cols=189 Identities=11% Similarity=0.128 Sum_probs=105.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCC--CCcchHHH-HHHHHHhc
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTET--ENVVLWNV-MLVAYGQL 394 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~-li~~~~~~ 394 (968)
|.+++..+.+..++..+.+++..-.+.. +.+..-.+.|..+|-...++..|-..++++.. |...-|.. -...+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 4444444444445555555544443332 12333444455556666666666666655542 22222221 12345566
Q ss_pred CCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHH----hhCChHHHHHHHhhCC-CCCceeHHHHHHH
Q 040643 395 NDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHT----QLGNLNTAQEILRRLP-EDDVVSWTAMIVG 469 (968)
Q Consensus 395 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~----~~~~~~~a~~~~~~~~-~~~~~~~~~li~~ 469 (968)
+.+..|+.+...|.+. |+. . +...++.. .-+++..++.+.++.+ +.+..+.+.....
T Consensus 92 ~i~ADALrV~~~~~D~---~~L------~---------~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCl 153 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PAL------H---------SRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCL 153 (459)
T ss_pred cccHHHHHHHHHhcCC---HHH------H---------HHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhe
Confidence 6677777776666542 100 0 00011111 1156666677777777 3555666666667
Q ss_pred HHhcCChhHHHHHHHHHHhc-CCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCC
Q 040643 470 FVQHGMFGEALELFEEMENQ-GIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFS 527 (968)
Q Consensus 470 ~~~~g~~~~A~~l~~~m~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 527 (968)
..+.|++++|++-|+...+- |..| ...|+..+.- -+.++.+.|....++++++|+.
T Consensus 154 lykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH-y~~~qyasALk~iSEIieRG~r 210 (459)
T KOG4340|consen 154 LYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH-YSSRQYASALKHISEIIERGIR 210 (459)
T ss_pred eeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhh
Confidence 77889999999999987664 4444 4556555543 3567788888888888887764
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.85 E-value=0.00033 Score=76.01 Aligned_cols=121 Identities=15% Similarity=0.126 Sum_probs=99.0
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRV 777 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~ 777 (968)
..+|+..+...+.+++|..+|+++.+. .|+ ....|+.++...++-.+|.+++++. ...| |...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 455677777888899999999988655 354 4566788888888888999888877 3344 45655555566889
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.++.+.|..+++++.++.|++-.+|..|+.+|...|+|++|.-..+.+
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999887766
No 131
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.83 E-value=2.7e-05 Score=52.12 Aligned_cols=33 Identities=30% Similarity=0.578 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 695 (968)
.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888877
No 132
>PLN02789 farnesyltranstransferase
Probab=97.82 E-value=0.0011 Score=70.77 Aligned_cols=169 Identities=12% Similarity=0.128 Sum_probs=126.5
Q ss_pred hHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCc-
Q 040643 639 TLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHG-YALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGL- 712 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~- 712 (968)
..+.+.+..++|..+.+.+. .| +..+|+..-..+...| +.++++..++++.+ ..|+. .+|......+.+.|.
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~--~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAE--DNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHH--HCCcchHHhHHHHHHHHHcCch
Confidence 33455677888888888776 33 5567887777777777 67999999999998 56754 356655555555665
Q ss_pred -HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CCh----
Q 040643 713 -VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH---KNM---- 781 (968)
Q Consensus 713 -~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~---g~~---- 781 (968)
.+++..+++.+. .+.|. ...|.-..-++.+.|++++|++.++++ ...|+ ..+|.......... |..
T Consensus 123 ~~~~el~~~~kal---~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKIL---SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHH---HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 367788888775 34666 566777788889999999999999998 45554 78888776665543 222
Q ss_pred hHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 782 EIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+......+++++++|+|..+|..+..+|...
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcC
Confidence 4567778899999999999999999999874
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.81 E-value=0.00078 Score=66.46 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=130.4
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~ 705 (968)
|..+ .-+-..|--.|+-+++..+..... ..|....+..+....+.|++.+|+..|.+... ..| |..+++.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHH
Confidence 3444 555566667788787777777644 34666777788889999999999999999988 455 5778888889
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCChhH
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIE--PDAMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~g~~~~ 783 (968)
+|-+.|++++|..-|.+..+-.+-+ ...++.|.-.|.-.|+++.|..++.+.-.. .|..+-..|.-+-...|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~~--p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPNE--PSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccCC--chhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHH
Confidence 9999999999999988776543333 456788888888899999999998887332 357777888888888999999
Q ss_pred HHHHHHHHHccCCCCc-chHHHHHHHHhhcCCc
Q 040643 784 GEYAANHLLELEPEDS-ATYVLLSNIYAAAGKW 815 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~-~~~~~l~~~y~~~g~~ 815 (968)
|+.++.+-+..+ .. .....|.++-...|-|
T Consensus 221 A~~i~~~e~~~~--~~~~~~~~l~~~~~~~~~~ 251 (257)
T COG5010 221 AEDIAVQELLSE--QAANNVAALRAAASQSGAW 251 (257)
T ss_pred HHhhccccccch--hHhhHHHHHHHhhcccchh
Confidence 988887744432 22 2233455555555544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.0027 Score=68.21 Aligned_cols=144 Identities=15% Similarity=0.100 Sum_probs=104.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH-HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL-SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVD 741 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~ 741 (968)
.|--..-.+...|..++|+..+++++. -.||..-|..+. ..+...+++++|.+.|+.+.. ..|+ ....-.+..
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a~ 382 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHHH
Confidence 333344445566788888888888777 577766655544 467778888888888887754 3566 333445667
Q ss_pred HHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 742 LLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
+|...|+..||...+++. ..+-|+..|..|..+|...||...+..+ .+..|+-.|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHH
Confidence 888888888888888876 2334588999999999999987776654 345788899999999
Q ss_pred HHHHHHHhCC
Q 040643 820 QIRQIMKDRG 829 (968)
Q Consensus 820 ~~~~~m~~~g 829 (968)
...+..+++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9877776654
No 135
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.77 E-value=0.00013 Score=67.76 Aligned_cols=95 Identities=18% Similarity=0.234 Sum_probs=72.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
......++..+...|++++|.+.++.. ...|+ ...|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556666777777777777777765 44454 6667677777778888888888888888899999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|.+..+...+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 97 ALGEPESALKALDLAIE 113 (135)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999887665543
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.76 E-value=4.2e-05 Score=51.18 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.4
Q ss_pred eehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 040643 179 SVSWVAMISGFSQNGYEREAILLFCQMHILGTVP 212 (968)
Q Consensus 179 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 212 (968)
+.+||++|.+|++.|+++.|+++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 137
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.73 E-value=0.17 Score=58.71 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=58.5
Q ss_pred hhhHHHHHHHcCCHH---HHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 040643 533 GNALISLYARCGRIQ---EAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~---~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 606 (968)
.+.|+++|-+.++.. +|.-+++.-... |..+--.+|..|.--|-+..|.++|..|.-..++-|...|.. ++-+
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~ 517 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRA 517 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHH
Confidence 467888888888755 445555544433 333444578888888999999999998888888877766632 3344
Q ss_pred hhhhhHHHHHHHHHHHH
Q 040643 607 ANLANIKQGKQVHAMII 623 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~ 623 (968)
...|....+...+....
T Consensus 518 ~t~g~~~~~s~~~~~~l 534 (932)
T KOG2053|consen 518 ETSGRSSFASNTFNEHL 534 (932)
T ss_pred HhcccchhHHHHHHHHH
Confidence 45555555555544433
No 138
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.68 E-value=0.00052 Score=74.55 Aligned_cols=126 Identities=13% Similarity=0.063 Sum_probs=99.1
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGL 712 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~ 712 (968)
..+|+..+...++++.|.++|+++.+.++..+-.|+..+...++-.+|+++.++.++ ..|+. .....-...|...|+
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 345566666778899999999998866666666688888888889999999999887 45644 344444556888899
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCC
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPD 764 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~ 764 (968)
++.|+++.+++. .+.|+ -++|..|+..|...|++++|+-.++.+|+.|.
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~ 299 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTY 299 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCC
Confidence 999999998886 45777 67889999999999999999999999987654
No 139
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.63 E-value=6.1e-05 Score=49.08 Aligned_cols=31 Identities=29% Similarity=0.735 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDV 693 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 693 (968)
++||+||++|++.|+.++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988774
No 140
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.61 E-value=0.14 Score=55.96 Aligned_cols=128 Identities=9% Similarity=0.130 Sum_probs=91.8
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC-CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA-NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
..+|-..+..-.+..-.+.|..+|.+..+.+..+ ..+..++++.-+ ..++.+.|..+++.=++. +..++......++
T Consensus 366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkk-f~d~p~yv~~Yld 443 (656)
T KOG1914|consen 366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKK-FGDSPEYVLKYLD 443 (656)
T ss_pred ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHh-cCCChHHHHHHHH
Confidence 3466677777777777777888888888777777 444444555433 356677777777665543 3445555677888
Q ss_pred HHHhcCCHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEK------NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
.+...++-+.|+.+|++.... ....|..||.--..-|+...++++-+++..
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 888888888888888887633 346899999988899999999888888765
No 141
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.59 E-value=0.00092 Score=62.04 Aligned_cols=114 Identities=11% Similarity=0.083 Sum_probs=82.7
Q ss_pred HHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-C
Q 040643 684 LFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQM-P 760 (968)
Q Consensus 684 l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~ 760 (968)
+|++.+. ..|+.. ....+...+...|++++|.+.|+..... .| +...+..+...+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 566543 4556666777788888888888776543 34 3666777888888888888888887776 4
Q ss_pred CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 761 IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 761 ~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
..|+ ...|..+...+...|+.+.|....+++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 4454 67777777778888999999999999999999876543
No 142
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.55 E-value=9.7e-05 Score=48.10 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.0
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 040643 180 VSWVAMISGFSQNGYEREAILLFCQMHILGT 210 (968)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 210 (968)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 5799999999999999999999999998774
No 143
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.50 E-value=0.00081 Score=73.50 Aligned_cols=84 Identities=14% Similarity=0.101 Sum_probs=50.8
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
.+.+.|++++|.++++++ ...|+ ...|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|.
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~ 90 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAK 90 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHH
Confidence 344556666666666555 34443 4555555555666666666666666666666666666666666666666666666
Q ss_pred HHHHHH
Q 040643 820 QIRQIM 825 (968)
Q Consensus 820 ~~~~~m 825 (968)
...+..
T Consensus 91 ~~~~~a 96 (356)
T PLN03088 91 AALEKG 96 (356)
T ss_pred HHHHHH
Confidence 654433
No 144
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.37 E-value=0.0043 Score=70.81 Aligned_cols=135 Identities=16% Similarity=0.145 Sum_probs=75.4
Q ss_pred CCCCHHHHHHHHHHHHhc--C---CHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC
Q 040643 658 PEKNEVSWNAMITGFSQH--G---YALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP 731 (968)
Q Consensus 658 ~~~d~~~~~~li~~~~~~--g---~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p 731 (968)
...|...|...+.|.... + ...+|+.+|++.++ ..||.. .+..+..++... ++..|
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~----------------~~~~~ 394 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVR----------------HSQQP 394 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHH----------------HhcCC
Confidence 345778888888775432 2 37789999999999 889854 444443322110 01111
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHh---CC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 732 KPEHYACVVDLLGRAGCLSRAREFTEQ---MP-IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 732 ~~~~y~~lv~~l~r~G~~~eA~~~~~~---m~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
.. .+++.+|.+..++ ++ ...++.++.++.-.....|+.+.|...++++++++| +..+|+.++.
T Consensus 395 ~~------------~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~ 461 (517)
T PRK10153 395 LD------------EKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGK 461 (517)
T ss_pred cc------------HHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 10 0112222222222 12 122344555554444556777777777777777777 4567777777
Q ss_pred HHhhcCCcchHHHHHH
Q 040643 808 IYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 808 ~y~~~g~~~~a~~~~~ 823 (968)
+|...|+.++|.+..+
T Consensus 462 ~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 462 VYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHcCCHHHHHHHHH
Confidence 7777777777766543
No 145
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.33 E-value=0.00017 Score=60.33 Aligned_cols=76 Identities=18% Similarity=0.263 Sum_probs=54.2
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 747 GCLSRAREFTEQM----PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 747 G~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
|++++|..+++++ |..|+...|-.+..++...|+.+.|..+.++ .+.+|.+.....+++.+|...|+|++|.++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 5566666666655 3223455666667777778888888888877 7778877777888899999999999998875
Q ss_pred H
Q 040643 823 Q 823 (968)
Q Consensus 823 ~ 823 (968)
+
T Consensus 82 ~ 82 (84)
T PF12895_consen 82 E 82 (84)
T ss_dssp H
T ss_pred h
Confidence 5
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.32 E-value=0.0033 Score=59.01 Aligned_cols=49 Identities=18% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
.+...|+++.|....+.+ .-.|-.+..+.+++++|...|++++|....+
T Consensus 94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444444444331 2222344456677777777777777776544
No 147
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.32 E-value=0.00011 Score=48.65 Aligned_cols=32 Identities=25% Similarity=0.507 Sum_probs=30.4
Q ss_pred HHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 788 ANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 788 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
.+++++++|+|+.+|..|+++|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 57899999999999999999999999999986
No 148
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.30 E-value=0.13 Score=53.88 Aligned_cols=246 Identities=19% Similarity=0.191 Sum_probs=159.5
Q ss_pred cCChhhHHHHHHHhhhcCCcCCc--chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANL--YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 651 (968)
.|++++|.+-|+.|... |.. .-+..|.-..-+.|+.+.++++-+..-..- +.-...+.+.++..+..|+++.|.
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 47777777777777642 211 112233333456778888887766665432 223557788899999999999999
Q ss_pred HHHhcCC-----CCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHcccCcHHHHHHHH
Q 040643 652 REFLEMP-----EKNEV--SWNAMITGFS---QHGYALEAINLFEKMKKHDVMPNHVT-FVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 652 ~~f~~~~-----~~d~~--~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~ 720 (968)
++.+.-. +||+. .--.|+.+-+ -.-+...|...-.+..+ +.||-+. -+.-..++...|++.+|-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9998644 55543 2223333322 23467777777777776 8899664 555567899999999999999
Q ss_pred HHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 040643 721 ESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELE 795 (968)
Q Consensus 721 ~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 795 (968)
+.+-+ .+|.++.....+ ..|.|+. +.+-+++. .++|| ...-.+...+....|++..|...++.+..++
T Consensus 287 E~aWK---~ePHP~ia~lY~--~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAWK---AEPHPDIALLYV--RARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHh---cCCChHHHHHHH--HhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 98854 467666443322 3455643 22222222 45776 4555566667788999999999999999999
Q ss_pred CCCcchHHHHHHHHhhc-CCcchHHHHHHHHHhCCCcc--CCccc
Q 040643 796 PEDSATYVLLSNIYAAA-GKWDCRDQIRQIMKDRGVKK--EPGQS 837 (968)
Q Consensus 796 p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~g~~k--~~g~s 837 (968)
|. .+.|.+|+.|-... |+-. ++|..|- ++++- +|.++
T Consensus 360 pr-es~~lLlAdIeeAetGDqg---~vR~wlA-qav~APrdPaW~ 399 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQG---KVRQWLA-QAVKAPRDPAWT 399 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchH---HHHHHHH-HHhcCCCCCccc
Confidence 95 46888999987665 6655 4555553 24443 44443
No 149
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.30 E-value=0.0016 Score=55.55 Aligned_cols=91 Identities=22% Similarity=0.256 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
+..++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+.+.|....++++++.|.+...+..++.+|...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445667777888888888888776 34444 4666667777778889999999999999999999889999999999999
Q ss_pred CcchHHHHHHHHH
Q 040643 814 KWDCRDQIRQIMK 826 (968)
Q Consensus 814 ~~~~a~~~~~~m~ 826 (968)
++++|....+...
T Consensus 83 ~~~~a~~~~~~~~ 95 (100)
T cd00189 83 KYEEALEAYEKAL 95 (100)
T ss_pred hHHHHHHHHHHHH
Confidence 9999888765543
No 150
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.28 E-value=0.0034 Score=58.95 Aligned_cols=112 Identities=14% Similarity=0.095 Sum_probs=65.7
Q ss_pred cCCHHHHHHHHhcCCC--CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHH
Q 040643 644 CGSIDDAKREFLEMPE--KNE----VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~~--~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~ 715 (968)
.++...+...++.+.. |+. ..+-.+...+...|++++|...|++.......|+ ......+...+...|.+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666665555542 221 2233344566677777777777777777542222 1244455666777777777
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
|+..++.... -......+...+|+|.+.|+.++|.+.+++
T Consensus 104 Al~~L~~~~~---~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPD---EAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccC---cchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777755321 122244556677777777777777776654
No 151
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.24 E-value=0.004 Score=60.44 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYA 737 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~ 737 (968)
....+..+...|...|++++|+..|++.++..-.|+ ...+..+...+.+.|++++|..++++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 445677778888888999999999998887432222 24677777788888888888888887754 3454 45566
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc
Q 040643 738 CVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
.++.++...|+...|..-.+.. ...++.|....+++++++|++ |..+.+.+...|+-
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6677777777765555332221 112577889999999999987 56666666666653
No 152
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.24 E-value=0.0025 Score=57.44 Aligned_cols=34 Identities=15% Similarity=0.077 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
+|..+...+...|+.+.|....+++++..|+++.
T Consensus 78 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 78 ALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 3444444455556666666666666666665543
No 153
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.0068 Score=60.46 Aligned_cols=195 Identities=12% Similarity=0.058 Sum_probs=146.0
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH-HHHHHccc
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVG-VLSACSHV 710 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~-ll~a~~~~ 710 (968)
++.+..+.+-.++++|++++..-. .++......+..+|....++..|-..++++-. ..|...-|.. -.....++
T Consensus 14 taviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 14 TAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHHh
Confidence 444444556677777877766544 33566777788888888888899999998887 6777655432 23355677
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCc--chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYGLVPKP--EHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAA 788 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~~--~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 788 (968)
|.+..|+++...|.. .|.. +..-.=.-.....|++--+..++++.|-+.++.+......-..+.|+.|.|.+-+
T Consensus 92 ~i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF 167 (459)
T KOG4340|consen 92 CIYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF 167 (459)
T ss_pred cccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence 788888888887732 2321 1111112345568899999999999998777776666555557889999999999
Q ss_pred HHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCc
Q 040643 789 NHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPG 835 (968)
Q Consensus 789 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g 835 (968)
+.+++..--+++.-..++-.+.+.|+++.|.+....+.++|++..|.
T Consensus 168 qaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPE 214 (459)
T KOG4340|consen 168 QAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPE 214 (459)
T ss_pred HHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCc
Confidence 99999988888888888889999999999999999999999999884
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0033 Score=63.41 Aligned_cols=100 Identities=20% Similarity=0.236 Sum_probs=56.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCC
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGC 748 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~ 748 (968)
.-..+.+++++|+..|.+.++ +.|+ .+-|..-..||++.|.++.|++-.++..
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al------------------------ 142 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL------------------------ 142 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHH------------------------
Confidence 334555666666666666666 5553 3344444555555555555555444332
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 749 LSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 749 ~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.+.|. ...|..|--++...|+++.|+++++++++++|+|......|.
T Consensus 143 -----------~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 143 -----------SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred -----------hcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 34444 455555556666666666666666666666666664444443
No 155
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.20 E-value=0.031 Score=54.96 Aligned_cols=157 Identities=17% Similarity=0.201 Sum_probs=103.3
Q ss_pred HHhcCCHHHHHHHHhcCCC--C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH
Q 040643 641 YAKCGSIDDAKREFLEMPE--K---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~~--~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
..-+|+.+.|...++.+.. | -+.-..+ .-+-..|++++|+++++..++.+ +-|.+++.--+...-..|.--+
T Consensus 62 Ald~~~~~lAq~C~~~L~~~fp~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~ 138 (289)
T KOG3060|consen 62 ALDTGRDDLAQKCINQLRDRFPGSKRVGKLKA--MLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLE 138 (289)
T ss_pred HHHhcchHHHHHHHHHHHHhCCCChhHHHHHH--HHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHH
Confidence 3445666666666665441 1 1111111 22345678888888888888754 3356677766666666777777
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC---ChhHHHHHHHH
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK---NMEIGEYAANH 790 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g---~~~~a~~~~~~ 790 (968)
|++-+....+. +.-|.+.|.-+.++|...|++++|--.++++ =+.|- ...+..|.......| |++.+....++
T Consensus 139 aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 139 AIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred HHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777766554 3556777888888888888888888888887 23443 445555555544433 78899999999
Q ss_pred HHccCCCCcchH
Q 040643 791 LLELEPEDSATY 802 (968)
Q Consensus 791 ~~~l~p~~~~~~ 802 (968)
++++.|.+.-.+
T Consensus 217 alkl~~~~~ral 228 (289)
T KOG3060|consen 217 ALKLNPKNLRAL 228 (289)
T ss_pred HHHhChHhHHHH
Confidence 999999665443
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.19 E-value=0.44 Score=50.82 Aligned_cols=105 Identities=14% Similarity=0.152 Sum_probs=78.0
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 716 (968)
-|.-+...|+...|.++..+..-||..-|-..|.+++..|++++-.++... .- .++-|...+.+|...|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCCHHHH
Confidence 344455678888888888888888888888899999999888876664332 12 347788888888888888888
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 717 LRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..|...+ .+.--+++|.+.|.+.+|.+.--+
T Consensus 257 ~~yI~k~-----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKI-----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhC-----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 8888753 135567888888888888766443
No 157
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.19 E-value=0.0028 Score=57.13 Aligned_cols=94 Identities=15% Similarity=0.037 Sum_probs=73.5
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED---SATYVLLS 806 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~ 806 (968)
.+-..+..+.+.|++++|.+.++++ ...|+ ...+..+...+...|+++.|....+.++...|++ +..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4555667777788888888877776 22333 3455567777888899999999999999998886 56789999
Q ss_pred HHHhhcCCcchHHHHHHHHHhC
Q 040643 807 NIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.+|...|++++|.+..+.+.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 9999999999999988777654
No 158
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.06 Score=53.47 Aligned_cols=114 Identities=16% Similarity=0.141 Sum_probs=55.5
Q ss_pred hhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHc----ccCcH
Q 040643 638 ITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS----HVGLV 713 (968)
Q Consensus 638 i~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~----~~g~~ 713 (968)
...|.+.|+.++|.+.......-+....|. ..+.+..+.+-|.+..++|.+ + -+..|.+-|..|+. -.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 345667777777777766633333333332 223344566677777777765 2 23445554444433 23345
Q ss_pred HHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 714 NEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
.+|.-+|++|..++ .|+....+-+.-+....|+++||+.+++.
T Consensus 190 qdAfyifeE~s~k~--~~T~~llnG~Av~~l~~~~~eeAe~lL~e 232 (299)
T KOG3081|consen 190 QDAFYIFEELSEKT--PPTPLLLNGQAVCHLQLGRYEEAESLLEE 232 (299)
T ss_pred hhHHHHHHHHhccc--CCChHHHccHHHHHHHhcCHHHHHHHHHH
Confidence 55555555554322 33333333333333334444444444433
No 159
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.012 Score=57.70 Aligned_cols=171 Identities=13% Similarity=0.156 Sum_probs=123.6
Q ss_pred cCCHHHHHHHHhcCC--------CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH-HHHcccCcH
Q 040643 644 CGSIDDAKREFLEMP--------EKNEV-SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL-SACSHVGLV 713 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~--------~~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll-~a~~~~g~~ 713 (968)
..+.++..+++.++. .+|.. .+..++-+....|+...|...++++... .|.+.-...+= .-+-..|.+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhch
Confidence 356778888887765 12332 3444455556778888899999888874 37654322221 224557889
Q ss_pred HHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 714 NEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
++|.+++++..++ .|+ ...|--=+-++-..|+--+|.+-+.+. .|..|...|.-|..-|...|+++.|....+.
T Consensus 103 ~~A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999988766 354 555555566666677777888776665 5677888999999999999999999999999
Q ss_pred HHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 791 LLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
++=+.|-++-.+-.|+.++.-.|--+...
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~ 208 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLE 208 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999999988887644433
No 160
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.11 E-value=0.0038 Score=68.30 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=58.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCC
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGC 748 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~ 748 (968)
..+...|++++|+++|+++++ ..|+ ...+..+..++.+.|++++|+..++...
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al------------------------ 63 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAI------------------------ 63 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------------
Confidence 344555666666666666665 4554 2344444445555555555555554443
Q ss_pred hHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 749 LSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 749 ~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
.+.|+ ...|..+..+|...|+++.|+..++++++++|+++.....+..+...
T Consensus 64 -----------~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k 116 (356)
T PLN03088 64 -----------ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK 116 (356)
T ss_pred -----------HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 23333 44455555556666666666666666666666666666665555443
No 161
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.07 E-value=0.0011 Score=53.01 Aligned_cols=61 Identities=18% Similarity=0.217 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC-CcchHHHHHHH
Q 040643 764 DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG-KWDCRDQIRQI 824 (968)
Q Consensus 764 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~ 824 (968)
++.+|..+...+...|+++.|+..++++++++|+++..|..++.+|...| ++++|.+..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~ 63 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEK 63 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 46788888888999999999999999999999999999999999999999 79999886544
No 162
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.06 E-value=0.014 Score=56.32 Aligned_cols=110 Identities=12% Similarity=0.113 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
...|..+...+...|++++|+..|++.+.....|. ..++..+...+.+.|+.++|+.+++...+ +.|. ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677788888888999999999999887422221 23677788888888999999998887653 3444 445555
Q ss_pred HHHHHh-------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 739 VVDLLG-------RAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 739 lv~~l~-------r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
+..++. +.|++++|...+ +.|....+++++++|++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~-------------------------~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWF-------------------------DQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHH-------------------------HHHHHHHHHHHHhCcccH
Confidence 555665 455555554433 456677788888888654
No 163
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0031 Score=64.04 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=88.7
Q ss_pred CCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH-hcC--ChhHHHHHHHHHHccCCCCcchHH
Q 040643 730 VPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACR-VHK--NMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 730 ~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~-~~g--~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
.|+ .+-|..|...|.+.|+++.|..-|.+. .+.|+ +.+|..+..+.. ..| ....++.++++++.+||.|..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 454 888999999999999999999888887 55555 777777777743 323 567899999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHhCCCccCCccc
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQS 837 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 837 (968)
+|+-.|...|++.+|...++.|-+......|..+
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~ 265 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS 265 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence 9999999999999999999999886654444433
No 164
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.03 E-value=0.056 Score=64.65 Aligned_cols=148 Identities=13% Similarity=0.181 Sum_probs=94.7
Q ss_pred hhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcC
Q 040643 496 IGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSG 575 (968)
Q Consensus 496 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g 575 (968)
..+-.+-.+|.+.|..+++..++..+++.. +.|+.+.|-+...|+.. ++++|.+++.+. +..|...+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~k 183 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKK 183 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhh
Confidence 344455555556666666666666666655 44777888888888888 888888887654 34477777
Q ss_pred ChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHhhHHHhcCCHHHHHHHH
Q 040643 576 YCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKT-GYDSETEASNSLITLYAKCGSIDDAKREF 654 (968)
Q Consensus 576 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f 654 (968)
++.++++++.++... .|+.+.+ -.++.+.+... |+.--+.++-.|.+.|-+..+++++..+|
T Consensus 184 q~~~~~e~W~k~~~~--~~~d~d~---------------f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iL 246 (906)
T PRK14720 184 QYVGIEEIWSKLVHY--NSDDFDF---------------FLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYIL 246 (906)
T ss_pred cchHHHHHHHHHHhc--CcccchH---------------HHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 888888888888765 3443333 11222223221 33333445556667777788888888888
Q ss_pred hcCC---CCCHHHHHHHHHHHH
Q 040643 655 LEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 655 ~~~~---~~d~~~~~~li~~~~ 673 (968)
+.+. +.|.....-++..|.
T Consensus 247 K~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 247 KKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhcCCcchhhHHHHHHHHH
Confidence 8776 345556666676665
No 165
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.0041 Score=62.76 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=80.2
Q ss_pred hHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHH
Q 040643 639 TLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVN 714 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~ 714 (968)
+-..+.+++++|...|.+.. ..|.+-|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..|+...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHH
Confidence 34668999999999999876 46899999999999999999999999999998 88985 58999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCCcchH
Q 040643 715 EGLRYFESMSTEYGLVPKPEHY 736 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p~~~~y 736 (968)
+|.+.|++. ..+.|+-+.|
T Consensus 167 ~A~~aykKa---LeldP~Ne~~ 185 (304)
T KOG0553|consen 167 EAIEAYKKA---LELDPDNESY 185 (304)
T ss_pred HHHHHHHhh---hccCCCcHHH
Confidence 999998865 3667776655
No 166
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.98 E-value=0.16 Score=53.23 Aligned_cols=250 Identities=14% Similarity=0.132 Sum_probs=169.3
Q ss_pred cHHHHHHHHHhc--CChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh--hhhHHHHHHHHHHHHHhCCCCChhHH--hH
Q 040643 563 SWNGLISGFAQS--GYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN--LANIKQGKQVHAMIIKTGYDSETEAS--NS 636 (968)
Q Consensus 563 ~~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~--~~ 636 (968)
-|.+|-.|+.-. |+...|.++-.+-.+ -+..|...+..+|.+-+. .|+.+.+++-|+.|.. .|..... ..
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~-llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASK-LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHh-hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 355555555544 555566555444332 256677778888887654 5899999999999876 2332221 12
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHcc-
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE--K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHD-VMPNHV--TFVGVLSACSH- 709 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~- 709 (968)
|.----+.|..+.|++.-+..-. | -...|.+.+...+..|+++.|+++.+.-+... +.||.. .-..||.+-..
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 22223467888888888777653 2 34688999999999999999999999877643 566643 33444543221
Q ss_pred --cCcHHHHHHHHHHhhhhcCCCCCcchHHHH-HHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHH
Q 040643 710 --VGLVNEGLRYFESMSTEYGLVPKPEHYACV-VDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 710 --~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-v~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~ 785 (968)
.-+...|+..-.. ...+.|+..--..+ ..+|.+.|++.++-.+++.+ ..+|.+.+|..+. ....|+.-+..
T Consensus 240 ~ldadp~~Ar~~A~~---a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALE---ANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHH---HhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHH--HhcCCCcHHHH
Confidence 1234445444332 23567774433333 47899999999999999999 8899999886554 44666654443
Q ss_pred -HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 786 -YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 786 -~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+-++++-.+.|+|......++..-...|.+..|..-
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 456788899999999999999998899998777553
No 167
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0083 Score=62.89 Aligned_cols=88 Identities=15% Similarity=0.118 Sum_probs=72.2
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 740 VDLLGRAGCLSRAREFTEQM-PIEP-----DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m-~~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
..-..+.|++.+|.+.+.+. .+.| ++-.|.....+....|+.+.|..-.+.+++|+|.-..+|..-++.|-..+
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 34567899999999999887 4554 45555555566678999999999999999999999999999999999999
Q ss_pred CcchHHH-HHHHHHh
Q 040643 814 KWDCRDQ-IRQIMKD 827 (968)
Q Consensus 814 ~~~~a~~-~~~~m~~ 827 (968)
+|++|.+ +.+.|+.
T Consensus 336 ~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHhh
Confidence 9999987 4555553
No 168
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.97 E-value=0.0015 Score=51.38 Aligned_cols=56 Identities=16% Similarity=0.209 Sum_probs=44.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...+...|+++.|+..++++++.+|+++..+..++.+|...|++++|....+...+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888888888888888888887666543
No 169
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.96 E-value=0.12 Score=57.40 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=58.3
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH
Q 040643 636 SLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
+-..|+...|+.++|..+ ++.+|-.+-++++-.++-. .+..+...+..-+.......-
T Consensus 708 aAAEmLiSaGe~~KAi~i------------------~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gL 765 (1081)
T KOG1538|consen 708 AAAEMLISAGEHVKAIEI------------------CGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGL 765 (1081)
T ss_pred HHHHHhhcccchhhhhhh------------------hhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccch
Confidence 345666677777777654 3344444445544444322 123344444444445555666
Q ss_pred HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-CCCC
Q 040643 716 GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMP-IEPD 764 (968)
Q Consensus 716 a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p~ 764 (968)
|-++|.+|-. ...+|++-..+|+++||..+-++.| +.||
T Consensus 766 AaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~d 805 (1081)
T KOG1538|consen 766 AAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDD 805 (1081)
T ss_pred HHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcccccc
Confidence 7777877732 3457788888888888888888885 4555
No 170
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.0093 Score=55.42 Aligned_cols=105 Identities=17% Similarity=0.214 Sum_probs=79.6
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC-
Q 040643 722 SMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM---PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE- 797 (968)
Q Consensus 722 ~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~- 797 (968)
+..++..+.|+..+--.+...+.+.|+..||...+++. ++.-|..+...+..+...-++.-.+....+++++-.|.
T Consensus 78 ea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~ 157 (251)
T COG4700 78 EATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAF 157 (251)
T ss_pred HHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCcc
Confidence 34455567788777777888888888888888888776 56677777777888877888888888888888888775
Q ss_pred -CcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 798 -DSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 798 -~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.+....+++..|+..|++.+|..-.+..-
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 56677788888888888887776555443
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.93 E-value=0.0023 Score=50.38 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
+...+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|....+++++++|+|+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999998887 56675 77888888888999999999999999999999874
No 172
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=96.92 E-value=0.0038 Score=60.39 Aligned_cols=89 Identities=11% Similarity=-0.053 Sum_probs=69.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
...|..++..+...|++++|...+++. .+.|+ +.+|..+...+...|+.+.|...++++++++|.+...+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 344555666677778888888877766 33332 3578888888999999999999999999999999999999999
Q ss_pred HHh-------hcCCcchHHHH
Q 040643 808 IYA-------AAGKWDCRDQI 821 (968)
Q Consensus 808 ~y~-------~~g~~~~a~~~ 821 (968)
+|. ..|++++|...
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~ 135 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAW 135 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHH
Confidence 999 77787765543
No 173
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=96.90 E-value=0.0054 Score=59.53 Aligned_cols=79 Identities=18% Similarity=0.145 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEP---D-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p---~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
|..++..+.+.|++++|.+.+++. ...| + ...|..+...+...|+.+.|....++++++.|+++..+..++.+|.
T Consensus 38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 117 (172)
T PRK02603 38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYH 117 (172)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 344444444555555555544443 1111 1 3567777777888888899999999999999999999999999998
Q ss_pred hcCC
Q 040643 811 AAGK 814 (968)
Q Consensus 811 ~~g~ 814 (968)
..|+
T Consensus 118 ~~g~ 121 (172)
T PRK02603 118 KRGE 121 (172)
T ss_pred HcCC
Confidence 8877
No 174
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=96.87 E-value=0.0071 Score=51.30 Aligned_cols=88 Identities=19% Similarity=0.184 Sum_probs=44.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDL 742 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 742 (968)
|..+...+...|++++|+..|++..+ ..|+. ..+..+...+...|++++|.++|+..... .|. ...+..++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~ 77 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL---DPDNAKAYYNLGLA 77 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCcchhHHHHHHHH
Confidence 44455556666666666666666665 34432 34444555555556666666655544321 122 2233344444
Q ss_pred HhhcCChHHHHHHHH
Q 040643 743 LGRAGCLSRAREFTE 757 (968)
Q Consensus 743 l~r~G~~~eA~~~~~ 757 (968)
+...|+.++|.+.++
T Consensus 78 ~~~~~~~~~a~~~~~ 92 (100)
T cd00189 78 YYKLGKYEEALEAYE 92 (100)
T ss_pred HHHHHhHHHHHHHHH
Confidence 444444444444433
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.84 E-value=0.0011 Score=52.85 Aligned_cols=24 Identities=17% Similarity=0.273 Sum_probs=8.5
Q ss_pred HHhcCChhHHHHHHHHHHccCCCC
Q 040643 775 CRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
+...|+++.|+...+++...+|++
T Consensus 35 ~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 35 YLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCH
Confidence 333333333333333333333333
No 176
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.80 E-value=1.3 Score=49.88 Aligned_cols=203 Identities=15% Similarity=0.206 Sum_probs=91.9
Q ss_pred CCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHH
Q 040643 527 SDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 527 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 606 (968)
+.+....-.+.+|+.+.|.-++|.+.|-+-..|. +-+..|...++|.+|.++-++.+- |...|+ +.-
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk-----aAv~tCv~LnQW~~avelaq~~~l----~qv~tl---iak- 915 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK-----AAVHTCVELNQWGEAVELAQRFQL----PQVQTL---IAK- 915 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccCcH-----HHHHHHHHHHHHHHHHHHHHhccc----hhHHHH---HHH-
Confidence 3455555566667777777777666665544332 234445555666666665544331 111111 110
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH---HHHHH-----HHHHHHhcCCH
Q 040643 607 ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNE---VSWNA-----MITGFSQHGYA 678 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~---~~~~~-----li~~~~~~g~~ 678 (968)
.+-++ +.+.. ..--|.++-|.|..-+|-+++.+|.++.. +-+-- .+.+. --.+.
T Consensus 916 -------~aaql---l~~~~-------~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~Al-LvE~h 977 (1189)
T KOG2041|consen 916 -------QAAQL---LADAN-------HMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGAL-LVENH 977 (1189)
T ss_pred -------HHHHH---Hhhcc-------hHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHH-HHHHH
Confidence 11111 11110 01235678888888777777777753211 00111 11111 11233
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
.++++-.++....|...|... +..+|...++-++.+..-+ -....|+-.|..--.+-|..+.|+.---.
T Consensus 978 ~~~ik~~~~~~~~g~~~dat~-------lles~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~ 1046 (1189)
T KOG2041|consen 978 RQTIKELRKIDKHGFLEDATD-------LLESGLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALI 1046 (1189)
T ss_pred HHHHHHhhhhhhcCcchhhhh-------hhhhhhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhh
Confidence 445555555555554333222 1233444444444332211 11234454555555667888888754322
Q ss_pred C----CCCCCHHHHHHH
Q 040643 759 M----PIEPDAMVWRTL 771 (968)
Q Consensus 759 m----~~~p~~~~~~~l 771 (968)
+ .+-|-..++..|
T Consensus 1047 L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1047 LSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hccHhhcCCHHHHHHHH
Confidence 2 234445555433
No 177
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.73 E-value=0.012 Score=54.20 Aligned_cols=91 Identities=10% Similarity=0.036 Sum_probs=73.4
Q ss_pred HHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccC
Q 040643 636 SLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVG 711 (968)
Q Consensus 636 ~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 711 (968)
++..-+...|++++|.++|+.+. .| +..-|-.|...+-..|++++|+..|..... +.|| +.++-.+..++...|
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~--L~~ddp~~~~~ag~c~L~lG 117 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQ--IKIDAPQAPWAAAECYLACD 117 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCchHHHHHHHHHHHcC
Confidence 34445567899999999998765 44 667888899999999999999999999988 6675 667888888889999
Q ss_pred cHHHHHHHHHHhhhhcC
Q 040643 712 LVNEGLRYFESMSTEYG 728 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~ 728 (968)
+.++|++.|+.....-+
T Consensus 118 ~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 118 NVCYAIKALKAVVRICG 134 (157)
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999987765443
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.73 E-value=0.034 Score=58.60 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSA-CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
.+|-.++....+.+..+.|..+|.+.++.+ .-+...|...... +...++.+.|.++|+...+.++- +.+.+.+.+|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHH
Confidence 467788888888888888888888887532 2233344444443 33456677799999988877543 3556778889
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
.+.+.|+.+.|..++++. ..-|. ..+|...+.--..+|+++....+.+++.++-|++.... .+++-|.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~-~f~~ry~ 151 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLE-LFSDRYS 151 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHH-HHHCCT-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHH-HHHHHhh
Confidence 999999999999999886 22333 46999999999999999999999999999999855443 3444443
No 179
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.72 E-value=0.89 Score=48.56 Aligned_cols=105 Identities=18% Similarity=0.248 Sum_probs=84.3
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
+..+.-+...|....|.++-.+..-+|-.-|-..|.+|+..++|++-.++... +-+++-|-.++.+|.+.|...
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 34455667789999999999999989999999999999999999987765432 224588999999999999998
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREF 654 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f 654 (968)
+|..+...+ .+..-+.+|.+||++.+|.+.-
T Consensus 255 eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence 888776551 2256789999999999997763
No 180
>PRK15331 chaperone protein SicA; Provisional
Probab=96.69 E-value=0.019 Score=53.23 Aligned_cols=100 Identities=12% Similarity=0.057 Sum_probs=79.5
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
||.++ .+..-....-+...|++++|..+|+-. -..| +...|..|...|...|+.+.|......+.-++++|+.+++.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 55554 333334455566788889988888876 1222 35578899989999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 040643 805 LSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 805 l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+..|...|+.++|........+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999997776543
No 181
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.68 E-value=0.0019 Score=53.98 Aligned_cols=78 Identities=21% Similarity=0.287 Sum_probs=48.5
Q ss_pred cCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChH
Q 040643 675 HGYALEAINLFEKMKKHDVMP---NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~ 750 (968)
.|++++|+.+|+++.+ ..| +...+..+..++.+.|++++|..+++.. .+.|+ ....-.++.+|...|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~--~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~----~~~~~~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLE--LDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKL----KLDPSNPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp TT-HHHHHHHHHHHHH--HHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCH----THHHCHHHHHHHHHHHHHHTT-HH
T ss_pred CccHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHh----CCCCCCHHHHHHHHHHHHHhCCHH
Confidence 5677788888888777 344 3344555677777788888888877762 22332 222334467777778888
Q ss_pred HHHHHHHh
Q 040643 751 RAREFTEQ 758 (968)
Q Consensus 751 eA~~~~~~ 758 (968)
+|.+.+++
T Consensus 76 eAi~~l~~ 83 (84)
T PF12895_consen 76 EAIKALEK 83 (84)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 87777654
No 182
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.67 E-value=0.13 Score=54.38 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=47.3
Q ss_pred CcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC---CCCC---CHHHHHHHHHH---HHh
Q 040643 711 GLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM---PIEP---DAMVWRTLLSA---CRV 777 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~p---~~~~~~~ll~~---~~~ 777 (968)
|++++|.++|+...+-|..... ...+.-+.+++.+.|++++|.+++++. ..+. ...+-..++.+ +-.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~ 208 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLA 208 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHH
Confidence 4555555555444333322221 233445566777777777777777664 1111 11222223332 234
Q ss_pred cCChhHHHHHHHHHHccCCCC--cchHHHHHHH
Q 040643 778 HKNMEIGEYAANHLLELEPED--SATYVLLSNI 808 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~ 808 (968)
.||...|....++..+.+|.- +.=+-++.++
T Consensus 209 ~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l 241 (282)
T PF14938_consen 209 MGDYVAARKALERYCSQDPSFASSREYKFLEDL 241 (282)
T ss_dssp TT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 567777778888877777753 2224444443
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.64 E-value=0.004 Score=50.31 Aligned_cols=55 Identities=13% Similarity=0.155 Sum_probs=46.4
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+...++++.|..+.+++++++|+++..+..++.+|...|+|++|.+..+..-+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999999999887665544
No 184
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.64 E-value=0.0034 Score=49.91 Aligned_cols=51 Identities=14% Similarity=0.294 Sum_probs=45.8
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..|+++.|...++++++.+|+++..+..|+.+|.+.|++++|.++.+.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999998775543
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.23 Score=55.17 Aligned_cols=229 Identities=14% Similarity=0.229 Sum_probs=111.9
Q ss_pred HHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCcee
Q 040643 385 NVMLVAYGQLND--LSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVS 462 (968)
Q Consensus 385 ~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 462 (968)
+..=.+|.+..+ +-+.+.-+++|+++|-.|+...... ++...|.+.+|.++|.
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~----------------~~Ay~gKF~EAAklFk--------- 656 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLAD----------------VFAYQGKFHEAAKLFK--------- 656 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHH----------------HHHhhhhHHHHHHHHH---------
Confidence 333344544333 4455556778888888888654432 2333455666665554
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
++|.-..|+++|..|+--. ..+-+...|+.++-+.+...-.. ...++.--.+...|+..
T Consensus 657 ---------~~G~enRAlEmyTDlRMFD----------~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiS 715 (1081)
T KOG1538|consen 657 ---------RSGHENRALEMYTDLRMFD----------YAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLIS 715 (1081)
T ss_pred ---------HcCchhhHHHHHHHHHHHH----------HHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhc
Confidence 3555566666666554210 11112222332222222211111 01111111344556666
Q ss_pred cCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHH
Q 040643 543 CGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMI 622 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~ 622 (968)
.|+.++|..+ ...+|-.+-+.++-+++... +..++..+..-+-+...+..|-++|..+
T Consensus 716 aGe~~KAi~i------------------~~d~gW~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~ 773 (1081)
T KOG1538|consen 716 AGEHVKAIEI------------------CGDHGWVDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKM 773 (1081)
T ss_pred ccchhhhhhh------------------hhcccHHHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHh
Confidence 6777666554 23344444444444444322 2223333333334445555666666554
Q ss_pred HHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CCHHH----H-------HHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 623 IKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KNEVS----W-------NAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 623 ~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d~~~----~-------~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
-+. .+++++....+++++|..+-++.++ +|+.. | .--=.+|.+.|+-.+|..+++++.
T Consensus 774 gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 774 GDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred ccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 331 3577788888888888888888773 34321 1 111234445555555555555544
Q ss_pred H
Q 040643 690 K 690 (968)
Q Consensus 690 ~ 690 (968)
.
T Consensus 845 n 845 (1081)
T KOG1538|consen 845 N 845 (1081)
T ss_pred h
Confidence 3
No 186
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.57 E-value=0.24 Score=49.42 Aligned_cols=141 Identities=12% Similarity=0.044 Sum_probs=98.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH----HHHHHHhh
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA----CVVDLLGR 745 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~----~lv~~l~r 745 (968)
..|...|++++|++..+.... + +... .=.....+...+|-|.+.++.|.. +.- -.+.+ ..|.+..-
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~--l--E~~A--l~VqI~lk~~r~d~A~~~lk~mq~---ide-d~tLtQLA~awv~la~g 185 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGEN--L--EAAA--LNVQILLKMHRFDLAEKELKKMQQ---IDE-DATLTQLAQAWVKLATG 185 (299)
T ss_pred HHhhcCCChHHHHHHHhccch--H--HHHH--HHHHHHHHHHHHHHHHHHHHHHHc---cch-HHHHHHHHHHHHHHhcc
Confidence 446777888888888776211 1 1111 112233455677888888888853 222 22333 44555556
Q ss_pred cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 746 AGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 746 ~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
.++..+|.=+|++| ...|+..+.+-.+..|-..||++.|+...+.++.-+|.++.+...+.-.--..|+-.++..
T Consensus 186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 77889999999999 4788888888888888899999999999999999999998777776666667788766643
No 187
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.53 E-value=0.031 Score=58.89 Aligned_cols=137 Identities=12% Similarity=0.154 Sum_probs=82.1
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHH-HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA-AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a-~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
+|-.++...-+.+..+.|-.+|.+.++.+ ..+...|...... +...++.+.|..+++...+. ++.+...+...++++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444444445545555555555554321 1111122211111 11234555577777766664 566778888889999
Q ss_pred HhcCCHHHHHHHHhcCCC--C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMPE--K----NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGV 703 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~~--~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~l 703 (968)
.+.|+.+.|+.+|++... + -...|...+.--.++|+.+...++.+++.+ ..|+..++..+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f 146 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELF 146 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHH
Confidence 999999999999998762 2 235899999998999999999999988888 56664433333
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.49 E-value=0.036 Score=49.34 Aligned_cols=92 Identities=16% Similarity=0.130 Sum_probs=69.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EHYACVVDLL 743 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l 743 (968)
.+..++-..|+.++|+.+|++.+..|..+. ...+..+.+++.+.|++++|..+|+.....+.-.+.. ..-..+...+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 356678889999999999999999887765 3478889999999999999999999887664221111 2222345678
Q ss_pred hhcCChHHHHHHHHh
Q 040643 744 GRAGCLSRAREFTEQ 758 (968)
Q Consensus 744 ~r~G~~~eA~~~~~~ 758 (968)
...|+.+||.+.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 889999999876543
No 189
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.45 E-value=0.29 Score=52.62 Aligned_cols=160 Identities=15% Similarity=0.112 Sum_probs=99.3
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCCC---C----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPEK---N----EVSWNAMITGFSQ---HGYALEAINLFEKMKKHDVMPNHVTFVGVLSA 706 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~~---d----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 706 (968)
|+-.|-...+++.-.++++.+... + ...--...-++-+ .|+.++|++++..++...-.+++.||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333477777777777777777632 1 1112223344445 67888888888886665556677777666554
Q ss_pred Hc---------ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH----HHHH---H-----hCCCCCCH
Q 040643 707 CS---------HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA----REFT---E-----QMPIEPDA 765 (968)
Q Consensus 707 ~~---------~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA----~~~~---~-----~m~~~p~~ 765 (968)
|- .....++|...+. +.|.+.|+..+=-.++-++..+|...+. .++. . +-..++..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~---kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYR---KGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHH---HHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 32 2234677777777 4466777654433444555555543222 2222 1 11233444
Q ss_pred H--HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 766 M--VWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 766 ~--~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
. ...+++.++...||.+.|.+++++++.+.|+.-
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 4 447899999999999999999999999987654
No 190
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.34 E-value=2 Score=46.36 Aligned_cols=131 Identities=11% Similarity=0.105 Sum_probs=78.4
Q ss_pred hhccCChhHHHHHHhhCCCC---Cc------ccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHH--hc
Q 040643 259 YSRSGNLTSAEQIFSKMQQR---DG------VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSAC--AS 327 (968)
Q Consensus 259 y~~~g~~~~A~~~f~~m~~~---~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~--~~ 327 (968)
+-+.+++.+|..+|.++-.. +. +.-+-+|++|..++ .+.....+....+. .| ...|..+..+. -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~n-ld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNN-LDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhh-HHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45778999999999988643 21 22456777776544 33333333333322 34 44566666654 36
Q ss_pred cCChHHHHHHHHHHHHh--CCC------------CChhhHhHHHHHHHhcCChhHHHHHHhhCCC--------CCcchHH
Q 040643 328 VGAFRTGEQLHSYAIKV--GIS------------KDIIVEGSMLDLYVKCSDVETAYKFFLTTET--------ENVVLWN 385 (968)
Q Consensus 328 ~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--------~~~~~~~ 385 (968)
.+.+..|.+.+..-... +.. +|.+.-+..++...+.|.+.+++.+++++.+ -|+.+||
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888877766554 221 2333445566777777888888887776643 2566676
Q ss_pred HHHHHHHh
Q 040643 386 VMLVAYGQ 393 (968)
Q Consensus 386 ~li~~~~~ 393 (968)
-++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 65555544
No 191
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.33 E-value=0.0054 Score=48.90 Aligned_cols=63 Identities=21% Similarity=0.226 Sum_probs=49.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCC
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK-NMEIGEYAANHLLELEP 796 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p 796 (968)
..|..+...+.+.|++++|+..+++. .+.|+ +.+|..+..++...| +.+.|...++++++++|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 44666677777778888887777765 55665 777878888888888 79999999999999988
No 192
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.31 E-value=0.031 Score=47.79 Aligned_cols=80 Identities=13% Similarity=0.016 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCChhhHHHHHHhhcccC--------chHHHHHHHHHHHHhcCCCchhHH
Q 040643 182 WVAMISGFSQNGYEREAILLFCQMHILGT-VPTPYAISSALSACTKIE--------LFEIGEQFHGLIFKWGFSSETFVC 252 (968)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~g~~~~~~~~ 252 (968)
-...|..+..++++.....+|+.+++.|+ .|+..+|+.+|.+..+.. .+-....+++.++..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34456666677999999999999999999 899999999999976543 234567888899999999999999
Q ss_pred HHHHHHhhc
Q 040643 253 NALVTLYSR 261 (968)
Q Consensus 253 ~~Li~~y~~ 261 (968)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 998877654
No 193
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.30 E-value=0.044 Score=60.08 Aligned_cols=120 Identities=13% Similarity=0.106 Sum_probs=81.2
Q ss_pred CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHHH
Q 040643 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKT--GYDSETEASNSLITLYAKCGSIDDAKREFLEMP----EKNEVS 664 (968)
Q Consensus 591 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~~ 664 (968)
+...+.+.+..+++.+.+..+++.+..++-..... ....-..+..++|..|.+-|..++|.++++.=. =||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456666777777777777777777766555543 222233444577777777777777777776533 367777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV 710 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 710 (968)
+|.++..+.+.|++..|.+++.+|...+...+..|+..-+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777777677777776666666554
No 194
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.29 E-value=0.052 Score=62.12 Aligned_cols=49 Identities=16% Similarity=0.029 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHcc--CCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 781 MEIGEYAANHLLEL--EPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 781 ~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
++.+...++++..+ +|.++..|..++-++...|+|++|....++..+..
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ 450 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE 450 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 34566666776664 78888899999999999999999999766665543
No 195
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.25 E-value=0.015 Score=49.61 Aligned_cols=87 Identities=8% Similarity=0.149 Sum_probs=68.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCcee
Q 040643 384 WNVMLVAYGQLNDLSESFQIFKQMQTEGL-TPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVS 462 (968)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 462 (968)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+..--.
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~----------------------------- 78 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDS----------------------------- 78 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccc-----------------------------
Confidence 34567777777999999999999999999 999999999998866531110
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhh
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACA 506 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 506 (968)
..-.++.-+.+.+|+.|...+++|+..||+.++....
T Consensus 79 -------~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Ll 115 (120)
T PF08579_consen 79 -------EDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLL 115 (120)
T ss_pred -------hhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 1112234578899999999999999999999988754
No 196
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.23 E-value=0.057 Score=52.33 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=68.1
Q ss_pred CcchHHHHHHHHhh-----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHH
Q 040643 595 NLYTFGSVVSAAAN-----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMI 669 (968)
Q Consensus 595 ~~~t~~~ll~a~~~-----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li 669 (968)
|..+|..++..+.+ .|..+-....+..|.+.|++-|..+|+.|++.+=| |.+- -..+|+.+ |+
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F~--- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------FM--- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------hc---
Confidence 44444444444432 35666666777888888999999999999987765 3221 11111111 10
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
-...+-+-|++++++|...|+.||..|+..|+..+...+.
T Consensus 114 ---hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 ---HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ---cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1123556789999999999999999999999988876664
No 197
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.19 E-value=0.045 Score=53.03 Aligned_cols=98 Identities=16% Similarity=0.256 Sum_probs=74.6
Q ss_pred HHHHhcC--CCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc-------------
Q 040643 651 KREFLEM--PEKNEVSWNAMITGFSQH-----GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV------------- 710 (968)
Q Consensus 651 ~~~f~~~--~~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~------------- 710 (968)
...|+.. ..+|..++..+|..|.++ |+.+=....+..|.+-|+.-|-.+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 356777777777777644 66666677778888888888888888888765432
Q ss_pred ---CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 711 ---GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 711 ---g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
.+.+-|++++++| +.+|+-|+.+++..+++.+|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qM-E~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQM-ENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHH-HHcCCCCcHHHHHHHHHHhccccHH
Confidence 2356689999999 5679999999999999999998864
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.15 E-value=0.82 Score=48.38 Aligned_cols=60 Identities=15% Similarity=0.148 Sum_probs=35.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChH-HHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMP-----NHV-TFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-----d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
+..++..+.+.|++++|+++|++....-... +.. .|...+-.+...|+...|.+.|+...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4456667777888888888888776643221 111 23333335556777778877777664
No 199
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.13 E-value=2.4 Score=48.65 Aligned_cols=329 Identities=12% Similarity=0.017 Sum_probs=157.0
Q ss_pred ccccCCCcccHH-----HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCC---hhHHHHHHhhCCC-
Q 040643 308 LDCLKPDCVTVA-----SLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSD---VETAYKFFLTTET- 378 (968)
Q Consensus 308 ~~g~~p~~~t~~-----~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~---~~~A~~~f~~~~~- 378 (968)
+-|+..+..-|. .++.-+...+.+..|.++-..+...-... ..++.....-+.+..+ -+.+..+=+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~ 503 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK 503 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc
Confidence 345555444333 34555556666677766655543211111 4566666666666532 3334444445554
Q ss_pred -CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHh
Q 040643 379 -ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEG----LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILR 453 (968)
Q Consensus 379 -~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 453 (968)
..-++|..+..--.+.|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+...++.-++.+-...-.+|.
T Consensus 504 ~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~ 583 (829)
T KOG2280|consen 504 LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM 583 (829)
T ss_pred CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 455678888877778888888877766432222 111233344455556666666665555544432222222222
Q ss_pred hCC-CC-CceeHHHHH---------HHHHhcCChhHHHHHHHH-H--HhcCCCCChhhHHHHHHHhhcccchhhhhhhhH
Q 040643 454 RLP-ED-DVVSWTAMI---------VGFVQHGMFGEALELFEE-M--ENQGIQSDNIGFSSAISACAGIQALNQGRQIHA 519 (968)
Q Consensus 454 ~~~-~~-~~~~~~~li---------~~~~~~g~~~~A~~l~~~-m--~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 519 (968)
.+. .| ....|--++ +.|-+..+. +++.-|.. - ...-+.+-.......-++|++......+.+..+
T Consensus 584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~-~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNH-QALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHhchhhhHHHHHHHHhhchhhhhhhhhcccch-hhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 211 11 111111111 112222222 22222111 0 000011112222333344444443222111111
Q ss_pred hhh-----------hhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhh
Q 040643 520 QSY-----------ISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMT 588 (968)
Q Consensus 520 ~~~-----------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 588 (968)
.-. +.|....-.+.+--+.-+...|+...|.++-.+..-+|-..|---+.+++..+++++-+++-+.+.
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 111 112112222223334445566777777777777777777677777777777777777666554443
Q ss_pred hcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHH
Q 040643 589 QVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 589 ~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 653 (968)
. ..-|.....+|.+.|+.++|+.+...+-. +.-.+.+|.++|++.+|.++
T Consensus 743 s------PIGy~PFVe~c~~~~n~~EA~KYiprv~~---------l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 743 S------PIGYLPFVEACLKQGNKDEAKKYIPRVGG---------LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred C------CCCchhHHHHHHhcccHHHHhhhhhccCC---------hHHHHHHHHHhccHHHHHHH
Confidence 1 34455566777777777777666433211 11456677777777666554
No 200
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.11 E-value=0.21 Score=54.42 Aligned_cols=211 Identities=10% Similarity=0.114 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhc-------CC
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEY-------GL 729 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------~i 729 (968)
+...|+.+..+|...|++++|+..|++.++ +.||.. +|..+..+|.+.|++++|+..++...+.+ .-
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~ 151 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN 151 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence 445566666666666666666666666665 555532 35666666666666666666665554321 11
Q ss_pred CCCc------chHHHHHHHHhhcCChH-----HHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 040643 730 VPKP------EHYACVVDLLGRAGCLS-----RAREFTEQM--PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL- 794 (968)
Q Consensus 730 ~p~~------~~y~~lv~~l~r~G~~~-----eA~~~~~~m--~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 794 (968)
.|+. ..+.-++..+.+.|... .=.++..+. |+.- --..|.++..+-.+-. +-...++++.+-.-
T Consensus 152 DpdL~plR~~pef~eLlee~rk~G~~~g~~~~~~~kL~~E~~aPfR~~R~f~y~a~~asa~ig~-~i~~~rl~~a~aG~~ 230 (453)
T PLN03098 152 DPDLAPFRASPEFKELQEEARKGGEDIGSSFRRDLKLISEVQAPFRGVRKFFYVAFTAAAGIST-FFTVPRLIRAIQGGD 230 (453)
T ss_pred CcchhhhcccHHHHHHHHHHHHhCCccCCchhhHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCCC
Confidence 1211 13445555555555311 112333332 3221 1334444433311110 00011111111111
Q ss_pred --------CC---CCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCC-----c--ccEEEEcCEEEEEe-cCCCCC
Q 040643 795 --------EP---EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEP-----G--QSWIEVKNSIHAFF-VGDRLH 855 (968)
Q Consensus 795 --------~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~-----g--~s~i~~~~~~~~f~-~~d~~h 855 (968)
-| -|.+...+++.+|....+-+|+ ++.+..++..+-..+ | .+..+..|..+.++ +|+..|
T Consensus 231 ~ap~l~~~~~nlaI~igav~~f~~L~~~e~k~~e~-q~~ri~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~e~ 309 (453)
T PLN03098 231 GAPDVLETAGNAAINIGGIVAFVSLFLWENKKEEE-QMSQITRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTKES 309 (453)
T ss_pred CCccHhHhhcccchHHHHHHHHHHHHHHHhcccHH-HHHHHHhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCHHH
Confidence 01 1456677788888766555554 344456655443321 1 12233455556554 577643
Q ss_pred cchHHHHHHHHHHHHHHHHcCc
Q 040643 856 PLADKIYDYLGNLNRRVAEIGY 877 (968)
Q Consensus 856 ~~~~~i~~~l~~l~~~~~~~g~ 877 (968)
..+-....+...+++.+.|-
T Consensus 310 --v~~al~~ae~~r~~L~~r~V 329 (453)
T PLN03098 310 --VTLAMQKAERYRTELLKRGV 329 (453)
T ss_pred --HHHHHHHhHHHHHHHHHcCc
Confidence 45556666777777777663
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.25 Score=48.96 Aligned_cols=239 Identities=13% Similarity=0.044 Sum_probs=155.1
Q ss_pred CccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcc--cHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchh
Q 040643 75 TVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEA--TFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISN 152 (968)
Q Consensus 75 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 152 (968)
....|+.-+.++.+...+++|..-++...+-. .||-+ .|+.+- =.+.|++-.=.-+-+|+.+.+.-. .-++
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~Yey~p~iy--p~rrGSmVPFsmR~lhAe~~~~lg----npqe 140 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLYYEYYPHVY--PGRRGSMVPFSMRILHAELQQYLG----NPQE 140 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-CcceeeeeccccC--CCCcCccccHHHHHHHHHHHHhcC----CcHH
Confidence 34567888888888888888877666554421 11110 000000 012233221134556776654321 2367
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCC--C--------eehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFK--D--------SVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALS 222 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~--~--------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 222 (968)
+|...|.-....++-...|+.-..| . ...-++++..+.-.|.+.-.+.++.+..+..-+.++.....+.+
T Consensus 141 sLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr 220 (366)
T KOG2796|consen 141 SLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGR 220 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHH
Confidence 8888877776666666666654322 1 22346677788888888889999999988766667777777777
Q ss_pred hhcccCchHHHHHHHHHHHHhcCCCchhHHHHHH-----HHhhccCChhHHHHHHhhCCCC---CcccHHHHHHHHHcCC
Q 040643 223 ACTKIELFEIGEQFHGLIFKWGFSSETFVCNALV-----TLYSRSGNLTSAEQIFSKMQQR---DGVTYNSLISGLAQCG 294 (968)
Q Consensus 223 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li-----~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g 294 (968)
.--..||.+.++..++.+.+..-..|....+.++ ..|.-.+++..|...|++++.. |.+.-|.-.-+..-.|
T Consensus 221 ~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 221 ISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 7788899999999999888765555555555544 3455668889999999988864 4555555444555578
Q ss_pred ChhHHHHHHHHhhccccCCCcccHHHHH
Q 040643 295 YSDKALELFEKMQLDCLKPDCVTVASLV 322 (968)
Q Consensus 295 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll 322 (968)
+..+|++..+.|.+. .|...+-.+++
T Consensus 301 ~l~DAiK~~e~~~~~--~P~~~l~es~~ 326 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQ--DPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHhcc--CCccchhhhHH
Confidence 899999999999864 56666655444
No 202
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.03 E-value=0.009 Score=42.47 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
.+|..|..++...|+.+.|+.+++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367888889999999999999999999999999999888764
No 203
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.02 E-value=0.072 Score=58.47 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=59.0
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHH
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYV 361 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 361 (968)
+..++|+.|.+.|..+++++++..=...|+-||.+||+.++..+...|++..|.++...|...+.-.+..++.--+..+.
T Consensus 105 t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 105 THHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 45678888888888888888888777788888888888888888888888888888777777765555444433333333
Q ss_pred hc
Q 040643 362 KC 363 (968)
Q Consensus 362 ~~ 363 (968)
+.
T Consensus 185 ~~ 186 (429)
T PF10037_consen 185 KY 186 (429)
T ss_pred Hh
Confidence 33
No 204
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.96 E-value=0.018 Score=46.48 Aligned_cols=65 Identities=20% Similarity=0.226 Sum_probs=52.1
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 741 DLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
.+|.+.+++++|.+.++.+ .+.|+ ...|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888999999988887 56666 66666666778889999999999999999999887665544
No 205
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.95 E-value=0.048 Score=56.41 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcC
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESMSTEYG 728 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 728 (968)
|+.-+.-+...|++++|+..|+.+++ ..|+. ..+..+..++...|++++|...|+.+.+.|.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~--~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP 211 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVK--KYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP 211 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 44444444556888888888888887 56764 3566666777777777777777777765543
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.89 E-value=4.7 Score=46.50 Aligned_cols=268 Identities=16% Similarity=0.099 Sum_probs=147.9
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----CChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQ----SDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 458 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
...++|..+..--.+.|+++-|..+++.=...+.. .+..-+...+.-+...|+.+...++.-++...-..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~------ 578 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNR------ 578 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHH------
Confidence 35567888887778889998888887653332211 13334566677777888877777666555432110
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCC-CCcccHHHHHHHHHhcCChhhHHHHH--HHhh----hcCCcCCcchHHHHHHHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDA-KDNISWNGLISGFAQSGYCEGALQVF--SQMT----QVGVQANLYTFGSVVSAA 606 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~~g~~~~A~~l~--~~m~----~~g~~p~~~t~~~ll~a~ 606 (968)
.+...-..+...|..++.+... .|..+ +-+.|-+ ++-.+++.-| +... ..|..|+ ....-++|
T Consensus 579 ---s~l~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~ 648 (829)
T KOG2280|consen 579 ---SSLFMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPA---LKTAANAF 648 (829)
T ss_pred ---HHHHHHHHhchhhhHHHHHHHHhhchhh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHH
Confidence 0111111222233333332211 11100 1111111 1111121111 1100 1122333 33334445
Q ss_pred hhhhhHHHHHH-------HH---HHHH-HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 607 ANLANIKQGKQ-------VH---AMII-KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 607 ~~~~~~~~a~~-------~~---~~~~-~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
++......+.+ ++ ..+. +.|....--+.+--+.-+..-|+..+|.++-.+..-||-..|---+.+++..
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~ 728 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADI 728 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhh
Confidence 54433211111 11 1111 1222222222233344456679999999999999888988888889999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
+++++-.++-+.+. | ++-|.....+|...|..+||.+|+.+.. + +.-.+++|.+.|++.+|.++
T Consensus 729 ~kweeLekfAkskk-----s-PIGy~PFVe~c~~~~n~~EA~KYiprv~------~----l~ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 729 KKWEELEKFAKSKK-----S-PIGYLPFVEACLKQGNKDEAKKYIPRVG------G----LQEKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHHHhccC-----C-CCCchhHHHHHHhcccHHHHhhhhhccC------C----hHHHHHHHHHhccHHHHHHH
Confidence 99987776655432 2 5667778899999999999999987552 1 22578999999999999876
Q ss_pred HH
Q 040643 756 TE 757 (968)
Q Consensus 756 ~~ 757 (968)
--
T Consensus 793 A~ 794 (829)
T KOG2280|consen 793 AA 794 (829)
T ss_pred HH
Confidence 43
No 207
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=95.88 E-value=0.071 Score=47.48 Aligned_cols=82 Identities=15% Similarity=-0.004 Sum_probs=63.1
Q ss_pred HHHHhhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC---CcchHHHHHHHHhh
Q 040643 740 VDLLGRAGCLSRAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE---DSATYVLLSNIYAA 811 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 811 (968)
..++-..|+.++|..++++. ...+. ...+-.+.++++..|+++.|..+.++.++-.|+ +....+.++-++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 44556677788888887765 22222 345556777889999999999999999988888 77788888889999
Q ss_pred cCCcchHHHH
Q 040643 812 AGKWDCRDQI 821 (968)
Q Consensus 812 ~g~~~~a~~~ 821 (968)
.|+++||.+.
T Consensus 88 ~gr~~eAl~~ 97 (120)
T PF12688_consen 88 LGRPKEALEW 97 (120)
T ss_pred CCCHHHHHHH
Confidence 9999999875
No 208
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.79 E-value=0.068 Score=48.10 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=42.4
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC
Q 040643 727 YGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPDAMVWRTLLSACRVHKN 780 (968)
Q Consensus 727 ~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~~~g~ 780 (968)
..+.|+.....+++..|+..|++..|.++++.. |++-+..+|..|+.-|...-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 355677888888889999999999998887765 666668899999988766554
No 209
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=95.76 E-value=1.5 Score=44.94 Aligned_cols=52 Identities=13% Similarity=0.134 Sum_probs=43.6
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+...|+..-|..-++.+++--|+.+ .+...+.+.|...|.-++|.++.+.+.
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 5677888889999999999888754 567788899999999999999887664
No 210
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.65 E-value=0.036 Score=60.09 Aligned_cols=64 Identities=13% Similarity=-0.062 Sum_probs=51.8
Q ss_pred CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch---HHHHHHHHhhcCCcchHHHHHHHH
Q 040643 762 EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT---YVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 762 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.|+ ...|..+..++...|+++.|...++++++++|++..+ |+.++.+|+..|+.++|....+..
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 454 7888888888888888888888888888888888754 888888888888888888754433
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.62 E-value=2.9 Score=42.14 Aligned_cols=192 Identities=19% Similarity=0.136 Sum_probs=134.6
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS 705 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 705 (968)
..........+...+.+..+...+.... ......+..+...+...+...++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4566667777778888888877777653 33455677777777788888888888888887433331 22222223
Q ss_pred -HHcccCcHHHHHHHHHHhhhhcCCCC----CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHh
Q 040643 706 -ACSHVGLVNEGLRYFESMSTEYGLVP----KPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD--AMVWRTLLSACRV 777 (968)
Q Consensus 706 -a~~~~g~~~~a~~~~~~m~~~~~i~p----~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~--~~~~~~ll~~~~~ 777 (968)
++...|.++++...|..... ..| ....+......+...|+.++|...+.+. ...|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67888889999888887732 333 2333333444466788888888888776 44444 6777777778888
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.++.+.+......+++..|.....+..++.++...|.++++........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 8889999999999999999877778888888887777888877655443
No 212
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.59 E-value=0.055 Score=55.96 Aligned_cols=90 Identities=12% Similarity=0.054 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHHH
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED---SATYVLLSN 807 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 807 (968)
|..-++++.+.|++++|.+.++.. ...|+ +.++-.|..++...|+++.|...++++++..|++ +.++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 333334434445555555444443 11222 1233334444555666666666666666655553 344444566
Q ss_pred HHhhcCCcchHHHHHHHH
Q 040643 808 IYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 808 ~y~~~g~~~~a~~~~~~m 825 (968)
+|...|++++|.++.+..
T Consensus 226 ~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 666666666666655544
No 213
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.57 E-value=0.35 Score=47.97 Aligned_cols=170 Identities=13% Similarity=0.053 Sum_probs=113.3
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCCCC--Cc--------ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHH
Q 040643 533 GNALISLYARCGRIQEAYLVFNKIDAK--DN--------ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSV 602 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~~~--d~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 602 (968)
+++|...|.-..-+++-...|+.-..+ .+ ...+.++....-.|.+.-.+.++++.++..-..+......+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 455666665555555555555443322 22 23455666666677788888888888876555566667777
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHhCCCCChh-----HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHh
Q 040643 603 VSAAANLANIKQGKQVHAMIIKTGYDSETE-----ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQ 674 (968)
Q Consensus 603 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~-----~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~ 674 (968)
.+..-+.|+.+.+...++.+.+..-..|.. +.......|.-..++.+|...|++++ ..|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 777788899999998888777643333333 33333344666778888888898877 3466777766666667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVTFVGVL 704 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 704 (968)
.|+..+|++..++|.+ ..|.+.+-.+++
T Consensus 299 lg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 7899999999999998 677766555443
No 214
>PRK11906 transcriptional regulator; Provisional
Probab=95.48 E-value=0.38 Score=52.52 Aligned_cols=156 Identities=14% Similarity=0.179 Sum_probs=105.0
Q ss_pred HHH--HHHHHHHHhc-----CCHHHHHHHHHHHH-HCCCCCChHH-HHHHHHHHc---------ccCcHHHHHHHHHHhh
Q 040643 663 VSW--NAMITGFSQH-----GYALEAINLFEKMK-KHDVMPNHVT-FVGVLSACS---------HVGLVNEGLRYFESMS 724 (968)
Q Consensus 663 ~~~--~~li~~~~~~-----g~~~~A~~l~~~m~-~~g~~Pd~~t-~~~ll~a~~---------~~g~~~~a~~~~~~m~ 724 (968)
..| ..++.|...- -..+.|+.+|.+.. .+.+.|+... |..+...+. ......+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 4555554431 14567888999988 2237887543 333322211 1233455666655443
Q ss_pred hhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 725 TEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 725 ~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+.|+ ......+..+++-.|+++.|..++++. .+.|| +.+|......+...|+.+.|....++.++++|...++
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 44554 666677777888888899999999988 67888 7777777777888999999999999999999988777
Q ss_pred HHHHHHH--HhhcCCcchHHHHH
Q 040643 802 YVLLSNI--YAAAGKWDCRDQIR 822 (968)
Q Consensus 802 ~~~l~~~--y~~~g~~~~a~~~~ 822 (968)
-++--++ |... ..++|.++.
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHH
Confidence 7665555 5554 456666654
No 215
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.01 E-value=0.26 Score=46.17 Aligned_cols=60 Identities=22% Similarity=0.202 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+...++..+...|+.+.+...+++++.++|-|-..|..|..+|...|+..+|.++...++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 455677778899999999999999999999999999999999999999999999766553
No 216
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=94.91 E-value=1.1 Score=46.00 Aligned_cols=170 Identities=11% Similarity=0.119 Sum_probs=87.7
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCccc------HHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh--
Q 040643 537 ISLYARCGRIQEAYLVFNKIDAKDNIS------WNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN-- 608 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~~~d~~~------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~-- 608 (968)
...+.+.|++++|.+.|+.+....+.+ .-.++.+|-+.+++++|...|++..+....-...-+...+.+.+.
T Consensus 39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~ 118 (243)
T PRK10866 39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMA 118 (243)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhh
Confidence 344566788888888888876543221 223556778888899999998888775322222333333333321
Q ss_pred hh---------------h---HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHH
Q 040643 609 LA---------------N---IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMIT 670 (968)
Q Consensus 609 ~~---------------~---~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~ 670 (968)
.+ + ...|...++ .+|+-|=...-..+|......+...=..---.+..
T Consensus 119 ~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 119 LDDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred cchhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 111222222 22333333333344433333322111111112344
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPN----HVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
-|.+.|.+..|+.-|+.+++ --|+ ......+..++.+.|+.++|..+....
T Consensus 184 ~Y~~~~~y~AA~~r~~~v~~--~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQMLR--DYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHcCchHHHHHHHHHHHH--HCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 56677777777777777776 2333 234555556666666666666655543
No 217
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.87 E-value=9.2 Score=43.62 Aligned_cols=149 Identities=15% Similarity=0.211 Sum_probs=73.7
Q ss_pred CChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCC-----cchHHHHHHHHHhcCCHHHHHHH
Q 040643 329 GAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETEN-----VVLWNVMLVAYGQLNDLSESFQI 403 (968)
Q Consensus 329 ~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~l 403 (968)
|.+++|++++-.+-+..+ -|.++.+.|++-...++++.-...+ ...|+.+...++....+++|.+.
T Consensus 748 g~feeaek~yld~drrDL---------Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRDL---------AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhhh---------hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555554444321 2455666666666655554432211 24566666666666666666665
Q ss_pred HHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHH
Q 040643 404 FKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELF 483 (968)
Q Consensus 404 ~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 483 (968)
|..-. +.+.-.+.+-++..+++-..+-..+ +.|....-.|...+...|..++|.+.|
T Consensus 819 Y~~~~----------------------~~e~~~ecly~le~f~~LE~la~~L-pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 819 YSYCG----------------------DTENQIECLYRLELFGELEVLARTL-PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred HHhcc----------------------chHhHHHHHHHHHhhhhHHHHHHhc-CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 54321 1111111111112222222222222 334555667777888888888887776
Q ss_pred HHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhh
Q 040643 484 EEMENQGIQSDNIGFSSAISACAGIQALNQGRQIH 518 (968)
Q Consensus 484 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 518 (968)
-+--. | -..+.+|..++++.+|.++-
T Consensus 876 Lr~s~----p-----kaAv~tCv~LnQW~~avela 901 (1189)
T KOG2041|consen 876 LRRSL----P-----KAAVHTCVELNQWGEAVELA 901 (1189)
T ss_pred HhccC----c-----HHHHHHHHHHHHHHHHHHHH
Confidence 44211 1 13455666666665555443
No 218
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.84 E-value=1.5 Score=52.87 Aligned_cols=157 Identities=15% Similarity=0.188 Sum_probs=91.5
Q ss_pred CCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 544 GRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 544 g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+++++|..-+..+. ...|.-.+.---++|.+.+|+.++ +|+...+..+..+|++ ++.
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~------------hL~ 950 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYAD------------HLR 950 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHH------------HHH
Confidence 34445544444443 223333344444555555555543 5666666555555443 122
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH--HH
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT--FV 701 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t--~~ 701 (968)
+.. .++--.-||.+||++++|.+ +|...|++++|+.+..+|.. .-|.+. -.
T Consensus 951 ~~~------~~~~Aal~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~ 1003 (1265)
T KOG1920|consen 951 EEL------MSDEAALMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAE 1003 (1265)
T ss_pred Hhc------cccHHHHHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHH
Confidence 211 12223447889999999854 56667888888888877642 223322 24
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
.|.+-|..++..-+|-++...-..+ +.--+.+|+++-.+++|..+....
T Consensus 1004 ~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1004 ELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 5667778888887777776544332 334577888888888888776554
No 219
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=1.7 Score=46.29 Aligned_cols=239 Identities=13% Similarity=0.040 Sum_probs=139.3
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCccc-HHHHH--HHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHH
Q 040643 539 LYARCGRIQEAYLVFNKIDAKDNIS-WNGLI--SGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQG 615 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~~~d~~~-~~~li--~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a 615 (968)
.+.-.|+.++|.++--.+..-|... +-..+ .++--+++.+.|...|++-+.. .|+...- +.....
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~s----------k~~~~~ 245 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKS----------KSASMM 245 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhH----------HhHhhh
Confidence 3444555555555544333332221 11112 2233456677777777776644 3443322 111112
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--E-----KNEVSWNAMITGFSQHGYALEAINLFEKM 688 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m 688 (968)
...+....+. .+...|.|++..|.+.+.+.. . ++...|........+.|+.++|+.--++.
T Consensus 246 ~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 246 PKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 2222222222 356778999999999998876 2 34556777777888999999999999888
Q ss_pred HHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 040643 689 KKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMV 767 (968)
Q Consensus 689 ~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~ 767 (968)
.+ +.|..+ .+..-..++...+.+++|.+.|++..+. +-+.++-..+ .+|..-+++.. -.-
T Consensus 314 l~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~---~~s~e~r~~l----------~~A~~aLkkSk----Rkd 374 (486)
T KOG0550|consen 314 LK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL---EKDCEIRRTL----------REAQLALKKSK----RKD 374 (486)
T ss_pred hh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccccchHHHH----------HHHHHHHHHhh----hhh
Confidence 77 555433 3444445566678999999999876432 2222222222 23333333222 224
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCC-cch-------HHHHHHHHhhcCCcchHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPED-SAT-------YVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-~~~-------~~~l~~~y~~~g~~~~a~~ 820 (968)
|-.+|+.-+...+.|......+.++...|+- ++. +--.++.|.-.++.++..+
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 6677788888888888888888888888874 333 2345556666665555444
No 220
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=12 Score=44.03 Aligned_cols=175 Identities=15% Similarity=0.124 Sum_probs=104.1
Q ss_pred HHHHHhhccCChhHHHHHHhhCCCCCcccHHHHH----HHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccC
Q 040643 254 ALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLI----SGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVG 329 (968)
Q Consensus 254 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 329 (968)
.-+++..+...++.|..+-..-..+ ...-..+. .-+.+.|++++|...|-+-... +.| +.+++-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 3455666666666666665543322 22222222 2345678888888877665421 222 23455555555
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcch--HHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 330 AFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVL--WNVMLVAYGQLNDLSESFQIFKQM 407 (968)
Q Consensus 330 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m 407 (968)
....-..+++.+.+.|+... .--+.|+.+|.|.++.+.-.+..+... ..... ....+..+-+.+-.++|..+-.+.
T Consensus 412 ~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 55556666777778886543 334678999999999998888887776 22222 445566666666666666554433
Q ss_pred HhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCC
Q 040643 408 QTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPED 458 (968)
Q Consensus 408 ~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 458 (968)
.. ...-...+++.++++++|.+.+..++.+
T Consensus 490 ~~---------------------he~vl~ille~~~ny~eAl~yi~slp~~ 519 (933)
T KOG2114|consen 490 KK---------------------HEWVLDILLEDLHNYEEALRYISSLPIS 519 (933)
T ss_pred cc---------------------CHHHHHHHHHHhcCHHHHHHHHhcCCHH
Confidence 21 1112234455667888888888887754
No 221
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.69 E-value=1.4 Score=41.56 Aligned_cols=50 Identities=10% Similarity=0.121 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
.+...+...|..+.|+.+++.++.--| ++..-...+.+++++|+.+++..
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHH
Confidence 344556777888888888888888777 45556677788899998888865
No 222
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.2 Score=53.27 Aligned_cols=83 Identities=18% Similarity=0.158 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEE
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSI 845 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~ 845 (968)
.+...|...+.+.+++..|..-.+++++++|+|.-+.+.-+.+|...|.+++|....+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------- 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------- 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh-----------------
Confidence 345566666778889999999999999999999999999999999999999999987766542
Q ss_pred EEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 040643 846 HAFFVGDRLHPLADKIYDYLGNLNRRVAE 874 (968)
Q Consensus 846 ~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 874 (968)
.|...+|...|..|..++++
T Consensus 321 ---------~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 321 ---------EPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------CCCcHHHHHHHHHHHHHHHH
Confidence 37778899999988888875
No 223
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.58 E-value=0.2 Score=43.87 Aligned_cols=88 Identities=24% Similarity=0.229 Sum_probs=69.9
Q ss_pred HHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC----cchHHHHHHHHhhcCCc
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED----SATYVLLSNIYAAAGKW 815 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~----~~~~~~l~~~y~~~g~~ 815 (968)
++..+|++++|++.|.+. -+-| .+++|+.-..++|..|+.+.|..-.++++++.-+. ...|+.-+-+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567788888888888776 3333 47788889999999999999999999999986443 24789999999999999
Q ss_pred chHHHHHHHHHhCC
Q 040643 816 DCRDQIRQIMKDRG 829 (968)
Q Consensus 816 ~~a~~~~~~m~~~g 829 (968)
|+|..-.+..-+-|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 99988766665544
No 224
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.53 E-value=0.18 Score=47.21 Aligned_cols=70 Identities=23% Similarity=0.387 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHh----hhhcCCCCCcch
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESM----STEYGLVPKPEH 735 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m----~~~~~i~p~~~~ 735 (968)
....++..+...|++++|+.+.+++.. ..| |...+..++.++...|+..+|.+.|+.+ .+++|++|+.++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344455566666777777777777766 555 3456666777777777777777666654 335677777543
No 225
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.30 E-value=1.1 Score=41.52 Aligned_cols=68 Identities=19% Similarity=0.320 Sum_probs=43.1
Q ss_pred ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc-CChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 040643 696 NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA-GCLSRAREFTEQMPIEPDAMVWRTLLSA 774 (968)
Q Consensus 696 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~-G~~~eA~~~~~~m~~~p~~~~~~~ll~~ 774 (968)
+......++..|...+.++++..++..+.. |...++.+... ++.+.|.+++.+ ..+...|..++..
T Consensus 68 ~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~---~~~~~lw~~~~~~ 134 (140)
T smart00299 68 NHYDIEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVK---QNNPELWAEVLKA 134 (140)
T ss_pred ccCCHHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHh---CCCHHHHHHHHHH
Confidence 444555677777777877777777766521 33344444444 777778877776 2356677777766
Q ss_pred HH
Q 040643 775 CR 776 (968)
Q Consensus 775 ~~ 776 (968)
|.
T Consensus 135 ~l 136 (140)
T smart00299 135 LL 136 (140)
T ss_pred HH
Confidence 54
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.27 E-value=0.31 Score=51.32 Aligned_cols=127 Identities=12% Similarity=0.088 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHH---hhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-----CC---CCCH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFES---MSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-----PI---EPDA 765 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~---m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-----~~---~p~~ 765 (968)
..|..|.+.|.-.|+++.|+.+.+. +.++||-... ...|+.+...+.-.|+++.|.+.++.. .+ .-.+
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566777777778888888876543 3445565443 456777888888888888888877754 11 1224
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHcc----C--CCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLEL----E--PEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
..--+|.+.+-...+++.|+....+-+.+ + -...-++..|+|.|...|..+.|...-..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44456777777777788887766654443 2 23455778889999999988888775443
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.15 E-value=0.33 Score=48.55 Aligned_cols=101 Identities=18% Similarity=0.250 Sum_probs=81.8
Q ss_pred HHHHHHhcCC--CCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc---------
Q 040643 649 DAKREFLEMP--EKNEVSWNAMITGFSQH-----GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL--------- 712 (968)
Q Consensus 649 ~A~~~f~~~~--~~d~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~--------- 712 (968)
-.++.|..+. ++|-.+|-+++.-+..+ ++.+---..++.|.+-|+.-|-.+|..||+.+=+...
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3456777777 77889999999888765 4566666778899999999999999999998755432
Q ss_pred -------HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH
Q 040643 713 -------VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 713 -------~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~ 750 (968)
-+=|+.++++| +.+|+.|+.+.-..++.++||.|..-
T Consensus 132 F~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p~ 175 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFPT 175 (406)
T ss_pred HhhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhccccccH
Confidence 23378899999 67899999999999999999998753
No 228
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.03 E-value=15 Score=42.73 Aligned_cols=48 Identities=15% Similarity=0.268 Sum_probs=33.2
Q ss_pred hhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHH
Q 040643 351 IVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLS 398 (968)
Q Consensus 351 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 398 (968)
.++..+|+.+.-.|++++|-...-.|...+..-|.--+.-+...++..
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 345666777777788888888887777777777766666665555543
No 229
>PRK11906 transcriptional regulator; Provisional
Probab=93.97 E-value=0.46 Score=51.96 Aligned_cols=113 Identities=7% Similarity=0.029 Sum_probs=85.0
Q ss_pred cHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhh---------cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 040643 712 LVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGR---------AGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK 779 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r---------~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 779 (968)
..+.|..+|.+......+.|+ ...|.++...+.. .....+|.++.++. .+.|+ +.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 357788899988755577888 6667666554322 22345677777665 55665 555555555566777
Q ss_pred ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 780 NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 780 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+.+.|...+++++.++|+.+.+|...+++.+-+|+.++|.+..+.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 799999999999999999999999999999999999999885443
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.96 E-value=0.069 Score=43.66 Aligned_cols=26 Identities=23% Similarity=0.393 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
+++.+...|...|++++|+..|++.+
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555555555555555555544
No 231
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.84 E-value=0.47 Score=48.62 Aligned_cols=30 Identities=13% Similarity=0.347 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
|...|-.|...|..+|++..|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 232
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=93.59 E-value=2.8 Score=37.22 Aligned_cols=140 Identities=14% Similarity=0.128 Sum_probs=82.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA 752 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA 752 (968)
...|..++..++..+...+. +..-++-++---..+-+-+--.+.++++-+-|.+.|-. ..-.+|..+.+.|...|=
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~~se~ 88 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNKLSEY 88 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT---HH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcchHHH
Confidence 45677778888887776521 22223333332223334445556666665555555532 233455666666655443
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 753 REFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 753 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
. ..-|++....|.-+.-+.+...+++.+..+|...+-+++.|.+.|.-.++.++++..-++|++
T Consensus 89 v---------------D~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 89 V---------------DLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp H---------------HHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred H---------------HHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 2 234666778888899999999998877778999999999999999999999999988888875
No 233
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=93.50 E-value=2.7 Score=41.87 Aligned_cols=47 Identities=13% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhcCCcchHHH
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~ 820 (968)
-+...|+..-|..-++.+++--|+.. .+...|...|.+.|.-+.+..
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 36678889999999999999999765 355678888999998874443
No 234
>PRK12798 chemotaxis protein; Reviewed
Probab=93.49 E-value=11 Score=40.95 Aligned_cols=208 Identities=15% Similarity=0.187 Sum_probs=138.4
Q ss_pred cCCHHHHHHHHhcCC----CCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHH
Q 040643 644 CGSIDDAKREFLEMP----EKNEVSWNAMITGFS-QHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVN 714 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~ 714 (968)
.|+-++|.+.+..+. .+....+-+|+.+-. ...++.+|+++|++..- ..|-. ....--+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 689999999999887 345667777777654 45589999999999887 67753 24444555678899999
Q ss_pred HHHHHHHHhhhhcCCCCCcchHH-HHHHHHhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 715 EGLRYFESMSTEYGLVPKPEHYA-CVVDLLGRAG---CLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p~~~~y~-~lv~~l~r~G---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
++..+-..-.+.|.-.|=...+. -++.++.+.+ ..+.-.+++..|+-+--..+|..+...-.+.|+.++|..++++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99888877777777777644443 3344444433 3334344555553222266777788888899999999999999
Q ss_pred HHccCCCCcchHHHHHHHHhhcCCc--chHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHH
Q 040643 791 LLELEPEDSATYVLLSNIYAAAGKW--DCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNL 868 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~~y~~~g~~--~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l 868 (968)
++.+.+ ....-...+++|..+-+. +++....+.++.- ..++.+|+-..+.+.-..+
T Consensus 283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I---------------------~~~~L~~~Dr~Ll~AA~~v 340 (421)
T PRK12798 283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQI---------------------DRDKLSERDRALLEAARSV 340 (421)
T ss_pred HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcC---------------------ChhhCChhhHHHHHHHHHH
Confidence 999984 455556677777765442 3344444444331 1234556666666655556
Q ss_pred HHHHHHc
Q 040643 869 NRRVAEI 875 (968)
Q Consensus 869 ~~~~~~~ 875 (968)
..++++.
T Consensus 341 a~~V~~~ 347 (421)
T PRK12798 341 ARQVRRA 347 (421)
T ss_pred HHHHhcC
Confidence 5665543
No 235
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.36 E-value=9.5 Score=38.16 Aligned_cols=193 Identities=19% Similarity=0.165 Sum_probs=124.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHh-CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--CC-HHHHHHHHH-HHHh
Q 040643 600 GSVVSAAANLANIKQGKQVHAMIIKT-GYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--KN-EVSWNAMIT-GFSQ 674 (968)
Q Consensus 600 ~~ll~a~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--~d-~~~~~~li~-~~~~ 674 (968)
..........+....+.......... ........+..+...+...+..+.+.+.+..... ++ ...+..... .+..
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (291)
T COG0457 63 LLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYE 142 (291)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHH
Confidence 33333444444444444444443332 2233444455555666666667777777776552 22 122333333 6788
Q ss_pred cCCHHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCC
Q 040643 675 HGYALEAINLFEKMKKHDVMP----NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGC 748 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~P----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~ 748 (968)
.|+.++|...|++... ..| ....+......+...+..+++...+...... .|. ...+..+...+...|+
T Consensus 143 ~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 143 LGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred cCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHHccc
Confidence 8889999998888865 444 2234444444567788889998888877543 333 5667778888888889
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 749 LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+++|...+... ...|+ ...+..+...+...++.+.+....++.++..|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999888776 44555 555666666666667799999999999999997
No 236
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.25 E-value=15 Score=39.97 Aligned_cols=144 Identities=13% Similarity=0.187 Sum_probs=67.9
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHH-HHHHH
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP-----EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFV-GVLSA 706 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~-~ll~a 706 (968)
++-.+++.--+..-++.|+.+|-+.. .+++..++++|.-+++ |+..-|..+|+--+. ..||...|. -.+.-
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~--~f~d~~~y~~kyl~f 475 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLL--KFPDSTLYKEKYLLF 475 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHH--hCCCchHHHHHHHHH
Confidence 33344444444444555555554433 2344455555544433 444455555554333 344433322 23333
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcC
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHK 779 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g 779 (968)
+..-++-+.|+.+|+.......-.--...|.-|++-=..-|++..|..+=++| ...|...+....++-+.+..
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry~ik~ 549 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRYAIKA 549 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHHhhhc
Confidence 44455566666666643322111111344666666666667777777666666 34444444444444444433
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=93.16 E-value=0.71 Score=51.70 Aligned_cols=131 Identities=18% Similarity=0.266 Sum_probs=84.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPN--HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
...+|+.+++.+....-. +-|. ..-...++.-+.+.|..+.|+++-+.-.. -.++....|++
T Consensus 271 av~~~d~~~v~~~i~~~~---ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L 334 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASN---LLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNL 334 (443)
T ss_dssp HHHTT-HHH-----HHHH---TGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-H
T ss_pred HHHcCChhhhhhhhhhhh---hcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCH
Confidence 345566776655553111 1221 22355666667777888888776543322 24677789999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
+.|.+..++.+ +...|..|...+-.+||++.|+.++++. ..+..|+-+|...|+-+.-.++-+.-+.+|
T Consensus 335 ~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99999887754 7889999999999999999999999985 445678889999999766666655555544
No 238
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=93.14 E-value=0.76 Score=41.40 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=62.8
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG 711 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 711 (968)
.++.+++-++++.|+++....+.+..=.-| +.+-...+. --......|+..+..+++.++...|
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~-------~~~~~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n~ 66 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGID-------VNGKKKEGD---------YPPSSPLYPTSRLLIAIVHSFGYNG 66 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCC-------CCCccccCc---------cCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 455566666666666666666655432111 111111111 1112346789999999999999999
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
++..|.++.+...+.|+|+-....+..|..
T Consensus 67 ~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 67 DIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999999999998888777777764
No 239
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.06 E-value=7.3 Score=41.04 Aligned_cols=132 Identities=8% Similarity=0.086 Sum_probs=69.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhc--------CCcCCc-----chHHHHHHHHhhhhh---HHHHHHHHHHHHHhCC
Q 040643 564 WNGLISGFAQSGYCEGALQVFSQMTQV--------GVQANL-----YTFGSVVSAAANLAN---IKQGKQVHAMIIKTGY 627 (968)
Q Consensus 564 ~~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~p~~-----~t~~~ll~a~~~~~~---~~~a~~~~~~~~~~g~ 627 (968)
||.-.+.+.+..++++|..++++..+- ...|+. .++..+..++...+. .+++..+.+.+.+ .+
T Consensus 39 yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~-e~ 117 (278)
T PF08631_consen 39 YNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES-EY 117 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-hC
Confidence 444444444443666666665554321 122332 334455556655554 3445555555533 22
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CC--CHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCh
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMP-EK--NEVSWNAMITGF---SQHGYALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~--d~~~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~Pd~ 697 (968)
+..+.++-.-+....+.++.+++.+++.+|. .. ....|..++..+ ..+ ....|...+++++...+.|..
T Consensus 118 ~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 118 GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 3334444444566666788888888888776 22 234555555554 333 345667777776665555543
No 240
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.05 E-value=0.11 Score=42.50 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=14.2
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
++..+...+...|++++|+.+|++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555666666666666666554
No 241
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=92.83 E-value=12 Score=37.85 Aligned_cols=56 Identities=18% Similarity=0.131 Sum_probs=44.8
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcc---hHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSA---TYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.-+..+|...-|..-++.+++--|+.+. .+..|-++|...|..++|.+..+.+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 4467788888888888888888776554 4556778899999999999999988653
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.72 E-value=2.1 Score=47.05 Aligned_cols=219 Identities=15% Similarity=0.056 Sum_probs=113.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH---
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS--- 750 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~--- 750 (968)
+..+.+.-+++-++.++ +.||-.+-..+| |--.+.-+.|+.++|++..+.-. ..|++....+
T Consensus 180 RERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE------------~~lg~s~~~~~~g 244 (539)
T PF04184_consen 180 RERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE------------ASLGKSQFLQHHG 244 (539)
T ss_pred hcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH------------Hhhchhhhhhccc
Confidence 44566677777777777 778765544333 23345557788888876644200 0111111111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 751 RAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE--DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 751 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
...+.+.+-...|-..+=..|...+++.|..++|.+.++.+++..|. +-+.+..|.+.|-..+++.|+..+..+-.+.
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 11111222123333444455666667777777777777777776664 4456677777777777777777776655443
Q ss_pred CCccCCcccEEEEcCEEEEE-ecCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhccc-chh
Q 040643 829 GVKKEPGQSWIEVKNSIHAF-FVGDRLHPL-------ADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPC-VYI 899 (968)
Q Consensus 829 g~~k~~g~s~i~~~~~~~~f-~~~d~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 899 (968)
...|....+|-.. .-.| .+||+.-|+ +......++-+.+-++.--+||+--.-.-.+.-. -|.+ -..
T Consensus 325 ~lpkSAti~YTaA---LLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrG 400 (539)
T PF04184_consen 325 SLPKSATICYTAA---LLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRG 400 (539)
T ss_pred cCCchHHHHHHHH---HHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCC
Confidence 3333332222110 0000 123433332 2233456777888888777887522211111100 1122 233
Q ss_pred ccHHHHHHHHhh
Q 040643 900 HSEKLAIAFGLL 911 (968)
Q Consensus 900 hse~la~~~~~~ 911 (968)
-||-+|.||--+
T Consensus 401 DSEAiaYAf~hL 412 (539)
T PF04184_consen 401 DSEAIAYAFFHL 412 (539)
T ss_pred cHHHHHHHHHHH
Confidence 488877777654
No 243
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=92.51 E-value=0.61 Score=49.22 Aligned_cols=255 Identities=13% Similarity=0.136 Sum_probs=154.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCC---CChhhHHHHHHHhhcccchhhhhhhhHhhhhh----cCC-CCchhhhhHHHHH
Q 040643 469 GFVQHGMFGEALELFEEMENQGIQ---SDNIGFSSAISACAGIQALNQGRQIHAQSYIS----GFS-DDLSIGNALISLY 540 (968)
Q Consensus 469 ~~~~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li~~y 540 (968)
-+++.|+....+.+|+..++-|.. .=+..|+.+-+|+.-++++++|.+.|..=+.. |-. ........|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 367889999999999999887632 12334556667788888999999988653221 111 1122223344555
Q ss_pred HHcCCHHHHHHHHH-h------CCCC--CcccHHHHHHHHHhcCC--------------------hhhHHHHHHHhh---
Q 040643 541 ARCGRIQEAYLVFN-K------IDAK--DNISWNGLISGFAQSGY--------------------CEGALQVFSQMT--- 588 (968)
Q Consensus 541 ~k~g~~~~A~~~f~-~------m~~~--d~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~--- 588 (968)
--.|.+++|...-. . +-.+ ...++..+...|...|+ ++.|.+.|.+=.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 55667776654322 1 1111 12234445555554443 123344443311
Q ss_pred -hcCCc-CCcchHHHHHHHHhhhhhHHHHHHHHHHHHH----hCCC-CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---
Q 040643 589 -QVGVQ-ANLYTFGSVVSAAANLANIKQGKQVHAMIIK----TGYD-SETEASNSLITLYAKCGSIDDAKREFLEMP--- 658 (968)
Q Consensus 589 -~~g~~-p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~----~g~~-~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--- 658 (968)
..|-. .--..|..+-+.+.-+|+++.+...|+.-+. .|-. .....+..|.+.+.-.|+++.|.+.++...
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 11111 1113344455555567889999988865432 2321 234466778888889999999999887643
Q ss_pred ----CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 659 ----EKN--EVSWNAMITGFSQHGYALEAINLFEKMKK----HD-VMPNHVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 659 ----~~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
++. ..+.-+|.+.|..-..+++|+.++.+=+. .+ ..-....+.+|..++...|..++|+.+.+.-
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 333 34566788888888899999998877443 11 1223457889999999999999999887654
No 244
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.26 E-value=0.77 Score=46.53 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=75.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
.|+.-+.. .+.|++.+|...|...++. -|+. ..+.-|..++...|++++|..+|..+.++|+-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 46655544 4667899999999999984 4542 24666888999999999999999999999988888 588888
Q ss_pred HHHHHhhcCChHHHHHHHHhC
Q 040643 739 VVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m 759 (968)
++..+++.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999998887776
No 245
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.21 E-value=21 Score=39.07 Aligned_cols=73 Identities=14% Similarity=0.175 Sum_probs=59.2
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 751 RAREFTEQMPIEP----DAMVWRTLLSA--CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 751 eA~~~~~~m~~~p----~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+-+.++++.++.| +..+-+-|..| ...+|++..+.-.+.-+.++.| ++.+|-+++-......+++||..+...
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3455666665555 34455666666 5789999999999999999999 999999999999999999999988764
No 246
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=92.14 E-value=1.4 Score=50.16 Aligned_cols=184 Identities=15% Similarity=0.287 Sum_probs=113.9
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc----------chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhH
Q 040643 564 WNGLISGFAQSGYCEGALQVFSQMTQVGVQANL----------YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEA 633 (968)
Q Consensus 564 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 633 (968)
-..|+-.|....+++..+++.+.++.- ||. +.|...|+-=-+-|+-++|..+.--+++..-+.
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~v---- 276 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPV---- 276 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCC----
Confidence 345566677777788778887777653 321 334445555556677788877755554422111
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHccc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV---TFVGVLSACSHV 710 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~~~ll~a~~~~ 710 (968)
.-+|||-||++=+ .|- +-+.|-..+..+.|++.|++.-+ +.|+.. -+..||.|-.+.
T Consensus 277 ---apDm~Cl~GRIYK------DmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 277 ---APDMYCLCGRIYK------DMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred ---CCceeeeechhhh------hhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhhh
Confidence 1257888886532 221 12334455566778888888887 888754 344454442211
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
++...++ +.+ | -.+-.+++|.|.+++-.++++- ...+++-...+|...|.+++++
T Consensus 337 --Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiqAae~ 391 (1226)
T KOG4279|consen 337 --FENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQAAEM 391 (1226)
T ss_pred --ccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHHHHHH
Confidence 1111111 111 1 1244688999999988887753 3677888889999999999999
Q ss_pred HHccCCCCc
Q 040643 791 LLELEPEDS 799 (968)
Q Consensus 791 ~~~l~p~~~ 799 (968)
+++|.|..-
T Consensus 392 mfKLk~P~W 400 (1226)
T KOG4279|consen 392 MFKLKPPVW 400 (1226)
T ss_pred HhccCCcee
Confidence 999998643
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.07 E-value=2.6 Score=43.26 Aligned_cols=117 Identities=12% Similarity=0.137 Sum_probs=75.6
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHH---HHHHhcCChh
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLL---SACRVHKNME 782 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll---~~~~~~g~~~ 782 (968)
....|+..++...|...... .|+ .+.-..|..+|..+|+.++|..++..+|.+-...-|..|- .......+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34556666666666655432 233 4555667778888888888888888887665544444411 1122222222
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH-HHHHHHh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ-IRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~-~~~~m~~ 827 (968)
.. ...+.-+.-+|+|...-+.|+..|...|+.++|.+ +...|+.
T Consensus 221 ~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~ 265 (304)
T COG3118 221 EI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR 265 (304)
T ss_pred CH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 22 23345566799999999999999999999999987 4555543
No 248
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.51 E-value=0.39 Score=31.46 Aligned_cols=33 Identities=27% Similarity=0.248 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
.+|..+...+...|+++.|....+++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356667777888888888888888888888865
No 249
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=91.45 E-value=0.3 Score=32.16 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
.+|..+...+...|+++.|+...+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 467777888888888899999999999988864
No 250
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=91.38 E-value=8.2 Score=35.62 Aligned_cols=42 Identities=17% Similarity=0.242 Sum_probs=19.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhc
Q 040643 321 LVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKC 363 (968)
Q Consensus 321 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 363 (968)
++..+...+........+..+++.+ ..+....|.++.+|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3333333344444444444444444 24444556666666554
No 251
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.21 E-value=8.1 Score=38.45 Aligned_cols=68 Identities=26% Similarity=0.242 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK 732 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 732 (968)
..+-.....+...|++.+|++.|+++... -|+ ......+..++...|++++|...|+...+.|.-.|.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~ 77 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc
Confidence 34445566677889999999999999873 443 234667778888999999999999988887655554
No 252
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.87 E-value=1.3 Score=50.45 Aligned_cols=153 Identities=14% Similarity=0.043 Sum_probs=85.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChH------HHHHHHH-HHcc---cCcHHHHHHHHHHhhhhcCCCCCc
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHD-VMPNHV------TFVGVLS-ACSH---VGLVNEGLRYFESMSTEYGLVPKP 733 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~------t~~~ll~-a~~~---~g~~~~a~~~~~~m~~~~~i~p~~ 733 (968)
...++...+-+|+-+.+++++.+..+.+ +. .+. +|..++. .+.. ....+++.++++.+.+.| |+.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s 266 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNS 266 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCc
Confidence 4456667777788888888888766532 11 111 2222232 2222 456677777777776553 553
Q ss_pred chHH-HHHHHHhhcCChHHHHHHHHhCC-CCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-chHHHH
Q 040643 734 EHYA-CVVDLLGRAGCLSRAREFTEQMP-IEP-----DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS-ATYVLL 805 (968)
Q Consensus 734 ~~y~-~lv~~l~r~G~~~eA~~~~~~m~-~~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l 805 (968)
..|- --..++...|++++|.+.+++.- .+. ....+--+...+....|.+.|...+.++.+...-.. -+++..
T Consensus 267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~ 346 (468)
T PF10300_consen 267 ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3332 23355666777777777777541 111 112222333445556677777777777777655433 334455
Q ss_pred HHHHhhcCCcchHHHH
Q 040643 806 SNIYAAAGKWDCRDQI 821 (968)
Q Consensus 806 ~~~y~~~g~~~~a~~~ 821 (968)
+-.|...|+-+++.+.
T Consensus 347 a~c~~~l~~~~~~~~~ 362 (468)
T PF10300_consen 347 AACLLMLGREEEAKEH 362 (468)
T ss_pred HHHHHhhccchhhhhh
Confidence 5666677776555443
No 253
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=90.48 E-value=3.5 Score=43.18 Aligned_cols=14 Identities=36% Similarity=0.840 Sum_probs=10.9
Q ss_pred cccCChhhHHHHHHHHh
Q 040643 925 LRVCNDCHNWIKFVSKI 941 (968)
Q Consensus 925 ~r~c~dch~~~k~~s~~ 941 (968)
-|-|..|. |++|.+
T Consensus 405 ~rsCP~Cr---klrSs~ 418 (518)
T KOG1941|consen 405 TRSCPNCR---KLRSSM 418 (518)
T ss_pred CCCCccHH---HHHhhc
Confidence 57899997 888844
No 254
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=90.41 E-value=30 Score=37.67 Aligned_cols=67 Identities=9% Similarity=0.143 Sum_probs=49.8
Q ss_pred CCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCc---ccHHHHHHHHHcCCChhHHHHHHHHhhccccC
Q 040643 246 SSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDG---VTYNSLISGLAQCGYSDKALELFEKMQLDCLK 312 (968)
Q Consensus 246 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 312 (968)
+.|..+|-.||.-|...|..++.++++++|..|-. ..|..-|++-....++.....+|.+-+.....
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ 108 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN 108 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc
Confidence 45677888888888888888888888888877643 36777777777777777777777776655444
No 255
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.06 E-value=2.4 Score=42.68 Aligned_cols=113 Identities=14% Similarity=0.149 Sum_probs=80.9
Q ss_pred HHHHHhhCC--CCCcchHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHh
Q 040643 369 AYKFFLTTE--TENVVLWNVMLVAYGQL-----NDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQ 441 (968)
Q Consensus 369 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~ 441 (968)
.++.|...+ ++|-.+|-+++..+... +.++-....++.|.+-|+.-|..+|..||..+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------- 121 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------- 121 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc-----------
Confidence 455666666 56778888888887654 567878888999999999999999999987654411
Q ss_pred hCChHHHHHHHhhCCCCCceeHHHHHHHHHhc-CChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccc
Q 040643 442 LGNLNTAQEILRRLPEDDVVSWTAMIVGFVQH-GMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQA 510 (968)
Q Consensus 442 ~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 510 (968)
...-|.+-..|..- .+-+-+++++++|...|+.||..+-..+++++.+.+.
T Consensus 122 ------------------fiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 122 ------------------FIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ------------------cccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11122222223322 2335688999999999999999998888888877654
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=50 Score=39.16 Aligned_cols=141 Identities=13% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHH----HHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccC
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMI----SGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIE 228 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~ 228 (968)
.-+.+..+-.-++.|..+-..-..+ ...-..+. +-+-+.|++++|...|-+-... +.| ..+++-+....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHH
Confidence 3455555666666666665543221 22222222 2344688999998888775432 233 34555555555
Q ss_pred chHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcc--cHHHHHHHHHcCCChhHHHHH
Q 040643 229 LFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGV--TYNSLISGLAQCGYSDKALEL 302 (968)
Q Consensus 229 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~--~~~~li~~~~~~g~~~~A~~l 302 (968)
....--.+++.+.+.|+... .--+.|+.+|.|.++.+.-....+... .... -....+..+.+.+-.++|..+
T Consensus 412 ~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 55555666677777775432 334667888888888877777766655 2211 133344444444444444433
No 257
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=89.70 E-value=5.4 Score=36.48 Aligned_cols=19 Identities=11% Similarity=0.048 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHccCCCCc
Q 040643 781 MEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~ 799 (968)
+..|...++.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 3455556666666666543
No 258
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=89.66 E-value=3.4 Score=44.29 Aligned_cols=91 Identities=12% Similarity=0.097 Sum_probs=65.6
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
+..+.-.+.+.+++.+|.+..++. .++|+ .-..--=..+|...|+++.|+..++++++++|+|-.+...|+.+-.+..
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR 339 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 444555666777777777666665 44443 3333333456778899999999999999999999999999988877777
Q ss_pred CcchH-HHHHHHHH
Q 040643 814 KWDCR-DQIRQIMK 826 (968)
Q Consensus 814 ~~~~a-~~~~~~m~ 826 (968)
+..+. .++++.|=
T Consensus 340 ~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 340 EYEEKEKKMYANMF 353 (397)
T ss_pred HHHHHHHHHHHHHh
Confidence 77666 45777773
No 259
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=89.65 E-value=7 Score=43.17 Aligned_cols=102 Identities=12% Similarity=0.186 Sum_probs=66.5
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCC-C-CCC--HHHHHHHHHHHH
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMP-I-EPD--AMVWRTLLSACR 776 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~-~p~--~~~~~~ll~~~~ 776 (968)
..+...+-+.|..+||.+.|+.|.+++...-.......++..|...+.+.|+..++.+-. + .|. ...|.+.|-..|
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 345556667888888888888887765322234445568888888888888888888863 2 344 344444443444
Q ss_pred hcCCh---------------hHHHHHHHHHHccCCCCcchH
Q 040643 777 VHKNM---------------EIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 777 ~~g~~---------------~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.-++. ..|.++..++++.+|.-+.+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 43431 234578899999999766443
No 260
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.61 E-value=11 Score=36.72 Aligned_cols=179 Identities=16% Similarity=0.124 Sum_probs=104.2
Q ss_pred HHhcCCHHHHHHHHhcCC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHH
Q 040643 641 YAKCGSIDDAKREFLEMP--EKN-EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~--~~d-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 716 (968)
|-..|-+.-|+--|.... .|+ +..+|-+.--+...|+++.|.+.|+...+ +.|. ..++..-.-++.-.|.+.-|
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcchHHHhccceeeeecCchHhh
Confidence 444455555665555543 343 45677777777778888888888888777 5664 44555555566677888777
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccC
Q 040643 717 LRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK-NMEIGEYAANHLLELE 795 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~ 795 (968)
.+=|... |.-.|+-..-+...-+-.+.=+..+|..-+.+-...-|..-|+.-+-.+..-+ ..+. ..+++.+-.
T Consensus 153 q~d~~~f---YQ~D~~DPfR~LWLYl~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~e~---l~~~~~a~a 226 (297)
T COG4785 153 QDDLLAF---YQDDPNDPFRSLWLYLNEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISEET---LMERLKADA 226 (297)
T ss_pred HHHHHHH---HhcCCCChHHHHHHHHHHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccHHH---HHHHHHhhc
Confidence 7766544 33344432222223333344456666644333333455667777665543221 1111 112222211
Q ss_pred CCC-------cchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 796 PED-------SATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 796 p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.++ +.+|.-|+.-|-..|..++|..+.|....
T Consensus 227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaia 265 (297)
T COG4785 227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVA 265 (297)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 121 35789999999999999999999887643
No 261
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.24 E-value=2.5 Score=40.37 Aligned_cols=88 Identities=13% Similarity=0.121 Sum_probs=64.6
Q ss_pred HHHhhcCChHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 741 DLLGRAGCLSRAREFTEQM----PIEPD---AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m----~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
.-+...|++++|.+-+... |--|. .+.|..-..+..+.+..+.|...+.++++|.|.+--+.+.-+-+|....
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3455567777776655544 21111 3334444444567788999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHhC
Q 040643 814 KWDCRDQIRQIMKDR 828 (968)
Q Consensus 814 ~~~~a~~~~~~m~~~ 828 (968)
++++|.+-.+.+.+.
T Consensus 183 k~eealeDyKki~E~ 197 (271)
T KOG4234|consen 183 KYEEALEDYKKILES 197 (271)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999988877664
No 262
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.22 E-value=1.9 Score=44.62 Aligned_cols=109 Identities=18% Similarity=0.102 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCCh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCL 749 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~ 749 (968)
-|.+.|.+++|+..|..-+. +.| |.+++..-..||.+...+..|..=.+....- -...+.+|.|.|.-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL---------d~~Y~KAYSRR~~A 174 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL---------DKLYVKAYSRRMQA 174 (536)
T ss_pred hhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh---------hHHHHHHHHHHHHH
Confidence 45566666666666666555 566 6666666666666555444333222211100 01123344443332
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
-...|+.++|..-++.+++|+|++- -|-.+|+...-..|+.
T Consensus 175 -------------------------R~~Lg~~~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 175 -------------------------RESLGNNMEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred -------------------------HHHHhhHHHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 2334667788888889999999854 3444455444444443
No 263
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.15 E-value=0.12 Score=48.23 Aligned_cols=86 Identities=14% Similarity=0.148 Sum_probs=61.8
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHH
Q 040643 320 SLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSE 399 (968)
Q Consensus 320 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 399 (968)
.++..+.+.+.+.....++..+.+.+...+..+.+.|+.+|++.++.+...++++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 35566666777777777777777777667788999999999999888888888874433 333466777777788877
Q ss_pred HHHHHHHHH
Q 040643 400 SFQIFKQMQ 408 (968)
Q Consensus 400 A~~l~~~m~ 408 (968)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 777776653
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.10 E-value=38 Score=41.73 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=64.1
Q ss_pred CChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhh----hccCCchhhhHHHH
Q 040643 364 SDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRT----CTSLGALSLGEQIH 439 (968)
Q Consensus 364 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a----~~~~~~~~~~~~~~ 439 (968)
+++++|..-+..+. ...|.-.+.---+.|.+.+|+.++ .|+...+..+..+ |.....++.|.-+|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 55666666665554 334555556666777778877773 4666655555543 45567778888888
Q ss_pred HhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHH
Q 040643 440 TQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEME 487 (968)
Q Consensus 440 ~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 487 (968)
...|++++|. .+|..+|+|.+|+.+-.+|-
T Consensus 963 e~~GklekAl------------------~a~~~~~dWr~~l~~a~ql~ 992 (1265)
T KOG1920|consen 963 ERCGKLEKAL------------------KAYKECGDWREALSLAAQLS 992 (1265)
T ss_pred HHhccHHHHH------------------HHHHHhccHHHHHHHHHhhc
Confidence 8888888875 45566788888888887764
No 265
>PRK15331 chaperone protein SicA; Provisional
Probab=89.02 E-value=1.6 Score=40.89 Aligned_cols=83 Identities=11% Similarity=-0.036 Sum_probs=53.3
Q ss_pred HhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP--E-KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLR 718 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~ 718 (968)
-..|++++|..+|.-+. . -|..-|..|..+|-..|++++|+..|......+ .-|+..+......+...|+.++|+.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHH
Confidence 35677777777777543 2 355567777777777777777777777766532 1234455556666666777777777
Q ss_pred HHHHhhh
Q 040643 719 YFESMST 725 (968)
Q Consensus 719 ~~~~m~~ 725 (968)
.|.....
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7766543
No 266
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.97 E-value=27 Score=35.39 Aligned_cols=80 Identities=21% Similarity=0.205 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA 737 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 737 (968)
+..|-.=+..-.+.|++++|.+.|+.+... .|. .-+-..++.|.-+.|++++|+..+++..+.|+-.|+++ |.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~--~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~ 110 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSR--HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YA 110 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HH
Confidence 334444455556788888899888888863 342 34667777788888888888888888888877777755 44
Q ss_pred HHHHHHh
Q 040643 738 CVVDLLG 744 (968)
Q Consensus 738 ~lv~~l~ 744 (968)
--+.++.
T Consensus 111 ~YlkgLs 117 (254)
T COG4105 111 YYLKGLS 117 (254)
T ss_pred HHHHHHH
Confidence 3333333
No 267
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.76 E-value=3.1 Score=43.05 Aligned_cols=159 Identities=11% Similarity=-0.008 Sum_probs=104.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH----HHHHhhcCCh
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV----VDLLGRAGCL 749 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l----v~~l~r~G~~ 749 (968)
-+|+..+|-..++++++. .+.|-..+...=.+|.-.|..+.-...++++.. .-.|+...|.-+ .-.|...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999999883 444667788888899999999888888887643 235666555443 3345578888
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 750 SRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE----DSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
++|++.-++. .+.|. .-.-.++.......|+...|.+...+--..=.+ -+.+|-..+-.|.+.+.++.|.++..
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888887776 55554 333345556667778888887776654332111 12344455556677788888888754
Q ss_pred HHHhCCCccCCc
Q 040643 824 IMKDRGVKKEPG 835 (968)
Q Consensus 824 ~m~~~g~~k~~g 835 (968)
.=--+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 333333455544
No 268
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=88.64 E-value=1.6 Score=39.77 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=44.5
Q ss_pred HHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 742 LLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
...+.|++++|.+.++.+ |..|= ..+-..|+.++...|+++.|...+++.++|+|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344567777777777665 44443 344456788899999999999999999999998764
No 269
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=88.44 E-value=29 Score=36.69 Aligned_cols=135 Identities=13% Similarity=0.242 Sum_probs=76.8
Q ss_pred hhHHHHHHHhhhcCCcCCcchHHHHHHHHhh------hhhHHHHHHHHHHHHHhCC---CCChhHHhHHhhHHHhcCCHH
Q 040643 578 EGALQVFSQMTQVGVQANLYTFGSVVSAAAN------LANIKQGKQVHAMIIKTGY---DSETEASNSLITLYAKCGSID 648 (968)
Q Consensus 578 ~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~------~~~~~~a~~~~~~~~~~g~---~~~~~~~~~li~~y~k~g~~~ 648 (968)
++.+.+++.|.+.|++-+..+|.+.+..... ......++.++..|.+... .++-.++.+|+.+ ...+++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4456778888888888888777654433222 1235556666666666432 1122222222211 111111
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH-HcccCc--HHHHHHHHHHhh
Q 040643 649 DAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSA-CSHVGL--VNEGLRYFESMS 724 (968)
Q Consensus 649 ~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a-~~~~g~--~~~a~~~~~~m~ 724 (968)
+ ..+++...|+.+.+.|+..+ ...+.+-+-+ +.-... +....++++.+.
T Consensus 157 ~---------------------------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~ 209 (297)
T PF13170_consen 157 E---------------------------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK 209 (297)
T ss_pred H---------------------------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 1 13456778888888888775 4344444333 332222 457788888886
Q ss_pred hhcCCCCCcchHHHHHHH
Q 040643 725 TEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 725 ~~~~i~p~~~~y~~lv~~ 742 (968)
+. |+++...||..++=+
T Consensus 210 ~~-~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 210 KN-GVKIKYMHYPTLGLL 226 (297)
T ss_pred Hc-CCccccccccHHHHH
Confidence 65 999999998876543
No 270
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.42 E-value=9.5 Score=35.65 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=60.2
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhc
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMP-IEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~p~~~~~~~ll~~~~~~ 778 (968)
..+++.-.+.++.+++..++..+. -+.|. .++-.+-+-++.+.|++++|..++++.. -.|....-.+|+..|-..
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 334444556667777777777774 34666 4444555666778888888888888873 334455556778777665
Q ss_pred CChhHHHHHHHHHHccCC
Q 040643 779 KNMEIGEYAANHLLELEP 796 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p 796 (968)
..-..=...++.+++..|
T Consensus 91 ~~D~~Wr~~A~evle~~~ 108 (160)
T PF09613_consen 91 LGDPSWRRYADEVLESGA 108 (160)
T ss_pred cCChHHHHHHHHHHhcCC
Confidence 544444556777777766
No 271
>PRK09687 putative lyase; Provisional
Probab=87.92 E-value=39 Score=35.56 Aligned_cols=203 Identities=8% Similarity=0.004 Sum_probs=97.3
Q ss_pred CcccHHHHHHHHHhcCCh----hhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH--HHHHHHHHHHHhCCCCChhH
Q 040643 560 DNISWNGLISGFAQSGYC----EGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK--QGKQVHAMIIKTGYDSETEA 633 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~--~a~~~~~~~~~~g~~~~~~~ 633 (968)
|...-..-+.++.+-|+. ++++.++..+... .|+...-...+.+....+.-. ........+...-..++..+
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~V 144 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNV 144 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHH
Confidence 333333344455555542 3455555555322 344444444444444332111 01112222222223345556
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHG-YALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
-...+..+++.|+.+....+..-+..+|...-..-+.+++..+ ...++...+..++. .+|...-...+.+....|.
T Consensus 145 R~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 145 RFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 6666666777776433333333344555544444455555443 23456666666663 4566666666666666666
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSAC 775 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~ 775 (968)
.++...+-...+. ++ .....+.+++.-|.- +|...+.++ .-.||..+-..-..+|
T Consensus 222 -~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 222 -KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred -hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 4455555544332 11 123456666766663 566655555 2345555544444444
No 272
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=87.79 E-value=1.6 Score=30.74 Aligned_cols=34 Identities=21% Similarity=0.388 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV 698 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~ 698 (968)
.+|..+...|...|++++|+++|++.++ ..||..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~--~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALA--LDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCCH
Confidence 3577788888888999999999998888 678754
No 273
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.78 E-value=1.7 Score=32.09 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=27.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
|.-++.+.|+.+.|.+..+.+++++|+|..+-.+.
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 44567889999999999999999999988665554
No 274
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.45 E-value=1.2 Score=29.08 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
.+|..+...|...|++++|+..|++.++ +.|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence 4678888888888888899988888888 6665
No 275
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=34 Score=35.44 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=100.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc
Q 040643 668 MITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA 746 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 746 (968)
........|+..+|..+|..... ..|+ ...-..+..++...|++++|..++..+-.+.. .........=+.++.++
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~--~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qa 216 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQ--AAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQA 216 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHH--hCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHH
Confidence 34456778999999999999988 5564 45667778888999999999999987743211 01111123456778888
Q ss_pred CChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc--CCCCcchHHHHHHHHhhcCCcchH-HHHH
Q 040643 747 GCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL--EPEDSATYVLLSNIYAAAGKWDCR-DQIR 822 (968)
Q Consensus 747 G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a-~~~~ 822 (968)
....+..++..+..-.|+ ...--.|...+...|+.|.|..-.=.+++. .-+|.+.--.|..++..-|.-|.+ .+.|
T Consensus 217 a~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 217 AATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred hcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 888877777777766674 444445555677777777665544444443 234566666677777766655443 3345
Q ss_pred HHH
Q 040643 823 QIM 825 (968)
Q Consensus 823 ~~m 825 (968)
++|
T Consensus 297 RkL 299 (304)
T COG3118 297 RKL 299 (304)
T ss_pred HHH
Confidence 554
No 276
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.81 E-value=4.9 Score=40.89 Aligned_cols=95 Identities=16% Similarity=0.127 Sum_probs=62.8
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCC
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVHKN 780 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~g~ 780 (968)
+..+|++.+|..-|....+.|--.+- ...+--|...+.+.|++++|...+..+ |-.|- +...--|.-.....||
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 45677788888888888777633222 455666778888888888887776655 43333 2333344444566777
Q ss_pred hhHHHHHHHHHHccCCCCcch
Q 040643 781 MEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+.|....+.+++--|+.+.+
T Consensus 231 ~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 231 TDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHHHHHHHCCCCHHH
Confidence 788888888887777766543
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=86.59 E-value=38 Score=35.86 Aligned_cols=91 Identities=13% Similarity=0.050 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhh-cCCcCCc---chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCC-----CChhH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQ-VGVQANL---YTFGSVVSAAANLANIKQGKQVHAMIIKTGYD-----SETEA 633 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~---~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-----~~~~~ 633 (968)
+|-.+-.++-+--++.+++.+-+.-.. .|..|.. ....++-.|...++.++++.+.|+.+.+.--. ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 344455555554455555554333222 2333311 22234555666677788888887777663221 23557
Q ss_pred HhHHhhHHHhcCCHHHHHHH
Q 040643 634 SNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~ 653 (968)
+-+|...|+...++++|.-.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f 184 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFF 184 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhh
Confidence 77888888888887776544
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=85.99 E-value=3.4 Score=42.68 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=59.7
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChHHHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKK-----HDVMPNHVTFVG 702 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~Pd~~t~~~ 702 (968)
..++..++..+..+|+.+.+.+.+++.. .-|...|..++.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 3456778889999999999999998876 33778999999999999999999999998876 466666555444
Q ss_pred HHH
Q 040643 703 VLS 705 (968)
Q Consensus 703 ll~ 705 (968)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 433
No 279
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=85.99 E-value=17 Score=40.92 Aligned_cols=104 Identities=16% Similarity=0.155 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeH
Q 040643 384 WNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSW 463 (968)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 463 (968)
.+.++.-+-+.|..+.|+++-.+- +.-.++.-.+|+++.|.++.+... +...|
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~-------------------------~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W 350 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP-------------------------DHRFELALQLGNLDIALEIAKELD--DPEKW 350 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H-------------------------HHHHHHHHHCT-HHHHHHHCCCCS--THHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh-------------------------HHHhHHHHhcCCHHHHHHHHHhcC--cHHHH
Confidence 566666666777777777663322 122233334477777777665554 55689
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhh
Q 040643 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYI 523 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 523 (968)
..|.....+.|+.+-|.+.|++... |..++--+...|+.+.-+++-.....
T Consensus 351 ~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 351 KQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 9999999999999999999988654 33444444444444444444444333
No 280
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=85.42 E-value=6.3 Score=34.94 Aligned_cols=85 Identities=18% Similarity=0.081 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCC
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGC 748 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~ 748 (968)
.+..|+.+.|++.|.+.+. +-|. ...|+.-..++.-+|+.++|++=+++..+--|-... -..|.--.-+|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3444555555555555544 3442 334555555555555555555444444332222211 1112222334555666
Q ss_pred hHHHHHHHHh
Q 040643 749 LSRAREFTEQ 758 (968)
Q Consensus 749 ~~eA~~~~~~ 758 (968)
.+.|..-|+.
T Consensus 131 dd~AR~DFe~ 140 (175)
T KOG4555|consen 131 DDAARADFEA 140 (175)
T ss_pred hHHHHHhHHH
Confidence 6666655544
No 281
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.31 E-value=24 Score=36.17 Aligned_cols=55 Identities=13% Similarity=-0.053 Sum_probs=49.7
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.+|...|++..|....++++.++|-+...+-.|-++|+..|+--+|.+-++.|.+
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4588999999999999999999999999999999999999998888887777643
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=85.11 E-value=1.9 Score=28.80 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
+|+.|...|.+.|++++|+++|++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777788888888888888887543
No 283
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=84.99 E-value=57 Score=38.80 Aligned_cols=40 Identities=20% Similarity=0.279 Sum_probs=23.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGI 508 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 508 (968)
...+.-.|+++.|++.+-+ ..+...|.+.+...+.-+.-+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL 304 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLL 304 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT--
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCC
Confidence 3455667888888888876 334556667776666655433
No 284
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.92 E-value=1 Score=30.19 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHH
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+|..|+++|...|+|++|.++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999998665
No 285
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=84.67 E-value=9.1 Score=43.67 Aligned_cols=81 Identities=17% Similarity=0.148 Sum_probs=34.3
Q ss_pred CCHHHHHHHHhcCCC--CCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCC-C--ChHHHHHHHHHHcccCcHHHHHH
Q 040643 645 GSIDDAKREFLEMPE--KNEVSWNAMI-TGFSQHGYALEAINLFEKMKKHDVM-P--NHVTFVGVLSACSHVGLVNEGLR 718 (968)
Q Consensus 645 g~~~~A~~~f~~~~~--~d~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~-P--d~~t~~~ll~a~~~~g~~~~a~~ 718 (968)
..++.|.++++.+.+ |+...|.-.- ..+...|+.++|++.|++....... | ....+--+...+.-.+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 344555555555442 4444443322 2234445555555555544321000 0 11222233333444455555555
Q ss_pred HHHHhhh
Q 040643 719 YFESMST 725 (968)
Q Consensus 719 ~~~~m~~ 725 (968)
+|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555443
No 286
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.78 E-value=51 Score=33.10 Aligned_cols=156 Identities=17% Similarity=0.155 Sum_probs=87.3
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hHH---HHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN--HVT---FVGVLSA 706 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd--~~t---~~~ll~a 706 (968)
..++--..+|..||..+.|-..+++.- -...+-++++|+++|++...-=..-| ... +..+...
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 345566678999999888776665532 12234567777777777654200111 111 2223334
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcch-------HHHHHHHHhhcCChHHHHHHHHhC---C--CCC-CHHHHHHHHH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEH-------YACVVDLLGRAGCLSRAREFTEQM---P--IEP-DAMVWRTLLS 773 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~-------y~~lv~~l~r~G~~~eA~~~~~~m---~--~~p-~~~~~~~ll~ 773 (968)
+.+...++||-..|.+ ++++....+. |-..|-++.-+.++..|+..++.- | ..| +..+...||.
T Consensus 160 lVrl~kf~Eaa~a~lK---e~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLK---EGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hhhhHHhhHHHHHHHH---hhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 5566667776666553 2233222222 344444555677888888888873 3 222 3677777887
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
++ ..||.|....++. +++.-.|-|.|+..
T Consensus 237 ay-d~gD~E~~~kvl~---------sp~~r~MDneya~l 265 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVLS---------SPTVRNMDNEYAHL 265 (308)
T ss_pred Hh-ccCCHHHHHHHHc---------ChHhhhhhHHHHHH
Confidence 76 4567776666543 34444555555543
No 287
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=83.38 E-value=5.9 Score=37.00 Aligned_cols=54 Identities=17% Similarity=0.166 Sum_probs=38.8
Q ss_pred HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 776 RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
..+++.+.++.+...+--+.|+.+..-..-++++...|+|++|.++.+.+.+++
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 345677777777777777777777777777777777777777777766665543
No 288
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.20 E-value=65 Score=33.90 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
.||. ...+.+.+++++|.+.|+-.+
T Consensus 249 LW~~-~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 249 LWNK-GKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHH-HHHHHhhcCHHHHHHHHHHHH
Confidence 4554 344556788888888887543
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=82.99 E-value=1.9 Score=28.10 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+|..+...+...|+.+.|....+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4555555566677777777777777777764
No 290
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.86 E-value=12 Score=42.03 Aligned_cols=147 Identities=14% Similarity=0.119 Sum_probs=87.1
Q ss_pred cCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhh
Q 040643 363 CSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQL 442 (968)
Q Consensus 363 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~ 442 (968)
.|+++.|..++..++.+ .-+.+++-+-+.|..++|+++- .+.+.-.++.-++
T Consensus 599 rrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s-------------------------~D~d~rFelal~l 650 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELS-------------------------TDPDQRFELALKL 650 (794)
T ss_pred hccccccccccccCchh---hhhhHHhHhhhccchHhhhhcC-------------------------CChhhhhhhhhhc
Confidence 46777777777666632 3455666677777777777651 1222222333344
Q ss_pred CChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhh
Q 040643 443 GNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 522 (968)
Q Consensus 443 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 522 (968)
|+++.|.++..+ ..+..-|..|.++..+.|++..|.+.|..... |.+|+-.+...|+-+....+-....
T Consensus 651 grl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 651 GRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred CcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 666666655433 23556799999999999999999999987654 4455555555555544444444444
Q ss_pred hhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 040643 523 ISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 523 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
+.|.. |.-.-+|...|+++++.+++.
T Consensus 720 ~~g~~------N~AF~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 720 KQGKN------NLAFLAYFLSGDYEECLELLI 745 (794)
T ss_pred hhccc------chHHHHHHHcCCHHHHHHHHH
Confidence 44322 333344555555555555543
No 291
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=82.81 E-value=2.7 Score=27.27 Aligned_cols=31 Identities=35% Similarity=0.517 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
.|..+...|...|++++|++.|++.++ +.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~--l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE--LDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH--HCcC
Confidence 567777888888888888888888887 6665
No 292
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.77 E-value=10 Score=31.78 Aligned_cols=67 Identities=15% Similarity=0.245 Sum_probs=48.7
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 753 REFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 753 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
+.-+-.|.+.|++.+..+-|.|||.-+|+..|.+..+-+-..-..+...|-.+. .+++-.|++-|+.
T Consensus 30 mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l------------qeikp~l~ELGI~ 96 (103)
T cd00923 30 LNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL------------QEIKPTLKELGIS 96 (103)
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH------------HHHhHHHHHHCCC
Confidence 333344578899999999999999999999999999987755443444554432 3566777777763
No 293
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=81.17 E-value=88 Score=34.07 Aligned_cols=146 Identities=9% Similarity=-0.034 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHcccCcHHHHHHHHHHhhhh-cCCCCCcch
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP---NHVTFVGVLSACSHVGLVNEGLRYFESMSTE-YGLVPKPEH 735 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~~~~ 735 (968)
....+|..++..+.++|+++.|...+.++...+..+ ++..+..-....-..|+-++|...++...+. ..-......
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 345678888888888888888888888877643222 2223333344555667778888777766541 111101111
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC--C-CCC--CHHHHHHHHHHHHhc------CChhHHHHHHHHHHccCCCCcchHHH
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM--P-IEP--DAMVWRTLLSACRVH------KNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m--~-~~p--~~~~~~~ll~~~~~~------g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
...+...+.. ..+....- . ..+ -+.++..+...+... ++.+.+...++.+.++.|.....|..
T Consensus 224 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~ 297 (352)
T PF02259_consen 224 NAELKSGLLE------SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHS 297 (352)
T ss_pred HHHHhhcccc------ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHH
Confidence 1111100000 00000000 0 000 022232233333333 77888999999999999998888888
Q ss_pred HHHHHhh
Q 040643 805 LSNIYAA 811 (968)
Q Consensus 805 l~~~y~~ 811 (968)
++..+..
T Consensus 298 ~a~~~~~ 304 (352)
T PF02259_consen 298 WALFNDK 304 (352)
T ss_pred HHHHHHH
Confidence 8876654
No 294
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=81.03 E-value=90 Score=34.07 Aligned_cols=174 Identities=15% Similarity=0.134 Sum_probs=80.7
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcC-C-cCCcchH-HHHHHHHhh---hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 567 LISGFAQSGYCEGALQVFSQMTQVG-V-QANLYTF-GSVVSAAAN---LANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 567 li~~~~~~g~~~~A~~l~~~m~~~g-~-~p~~~t~-~~ll~a~~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
|+-+|-...+++..+++++.|...- . .++.... -...-|..+ .|+.++|++++..+....-.+++.++..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3335666677777777777766531 0 1111110 011123333 56666666666664443334444433333322
Q ss_pred HHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHcccCc-HHHH
Q 040643 641 YAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV---TFVGVLSACSHVGL-VNEG 716 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~~~ll~a~~~~g~-~~~a 716 (968)
|- +.|.+....|.. ..++|+..|.+.-+ +.||.. -+..|+.+..+.-. -.+.
T Consensus 227 yK---------D~~~~s~~~d~~-------------~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el 282 (374)
T PF13281_consen 227 YK---------DLFLESNFTDRE-------------SLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEEL 282 (374)
T ss_pred HH---------HHHHHcCccchH-------------HHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHH
Confidence 21 111111111211 15566666666655 556543 24444444443221 1222
Q ss_pred HHHH---HHhhhhcCCCCCcc---hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 717 LRYF---ESMSTEYGLVPKPE---HYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 717 ~~~~---~~m~~~~~i~p~~~---~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
.++- ..+..+.|...... -++.+..+..-+|+.++|.+..++| ...|.
T Consensus 283 ~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 283 RKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 2222 22212223333323 3456667777789999998888887 44443
No 295
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=80.75 E-value=10 Score=39.29 Aligned_cols=72 Identities=18% Similarity=0.338 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhh----hcCCCCCcch
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMST----EYGLVPKPEH 735 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~i~p~~~~ 735 (968)
..++..++..+...|+.+.+.+.++++.. ..| |...|..++.++...|....|+..++.+.+ +.|+.|..+.
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~ 229 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPEL 229 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHH
Confidence 34677889999999999999999999998 677 678899999999999999999999988754 4455555443
No 296
>PRK10941 hypothetical protein; Provisional
Probab=80.35 E-value=8.3 Score=39.98 Aligned_cols=81 Identities=22% Similarity=0.245 Sum_probs=63.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEE
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHA 847 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~ 847 (968)
.+.|-.++...++++.|.++.+.++.+.|+++.-+---+-+|+..|.|..|..=.+..-++- |
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----P------------- 246 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----P------------- 246 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC----C-------------
Confidence 45666778899999999999999999999999888889999999999999988555443321 1
Q ss_pred EecCCCCCcchHHHHHHHHHHHHH
Q 040643 848 FFVGDRLHPLADKIYDYLGNLNRR 871 (968)
Q Consensus 848 f~~~d~~h~~~~~i~~~l~~l~~~ 871 (968)
.-|.++.|...+++|..+
T Consensus 247 ------~dp~a~~ik~ql~~l~~~ 264 (269)
T PRK10941 247 ------EDPISEMIRAQIHSIEQK 264 (269)
T ss_pred ------CchhHHHHHHHHHHHhhc
Confidence 236677777777766544
No 297
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=79.65 E-value=57 Score=30.99 Aligned_cols=57 Identities=14% Similarity=0.064 Sum_probs=32.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhh
Q 040643 463 WTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYI 523 (968)
Q Consensus 463 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 523 (968)
+..++..+...|++-+|+.+.+.... .+......++.|..+.+|...--.++.....
T Consensus 92 ~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 92 YEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566677778888888887776422 1222234455565555555444444444443
No 298
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=79.47 E-value=47 Score=29.87 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=67.7
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh---hhHHHHHHHcCCHH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG---NALISLYARCGRIQ 547 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~---~~Li~~y~k~g~~~ 547 (968)
.-.|..++..++..+...+. +..-++.+|--....-+-+...+.++ .-|--.|.... ..++..|++.|...
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~Ld---sIGkiFDis~C~NlKrVi~C~~~~n~~s 86 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLD---SIGKIFDISKCGNLKRVIECYAKRNKLS 86 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHH---HHGGGS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHH---HHhhhcCchhhcchHHHHHHHHHhcchH
Confidence 34577778888888776542 22223333322222222222222222 22322232221 23455555555433
Q ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 040643 548 EAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGY 627 (968)
Q Consensus 548 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 627 (968)
+- ...-+....+.|+-+.--++.+++.+ +-+|+......+..||.+.|+..++.+++..+-+.|+
T Consensus 87 e~--------------vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 87 EY--------------VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HH--------------HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HH--------------HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 22 22345667777887777777777765 3356666777777888888888888888887777764
No 299
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=79.14 E-value=7.6 Score=35.62 Aligned_cols=53 Identities=13% Similarity=0.072 Sum_probs=44.7
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
.+++.+.++.+.+.+--+.|+.+..-..-++++...|+|+||.++.+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37788888888888888999999999999999999999999999877666544
No 300
>PRK11619 lytic murein transglycosylase; Provisional
Probab=78.74 E-value=1.5e+02 Score=35.37 Aligned_cols=261 Identities=11% Similarity=0.057 Sum_probs=131.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
..-+..+.+.+++..... |..-+..+...--....+....|+.++|....+.+-..|. ........++..+.+.|.+.
T Consensus 103 ~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt 180 (644)
T PRK11619 103 SRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQD 180 (644)
T ss_pred HHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCC
Confidence 344555566777777777 3322233444444556667777887777777777766552 23445556666665444332
Q ss_pred HHHH--HHHHHHHhC-----------CCCC-hhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHH--hcCC
Q 040643 614 QGKQ--VHAMIIKTG-----------YDSE-TEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFS--QHGY 677 (968)
Q Consensus 614 ~a~~--~~~~~~~~g-----------~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~--~~g~ 677 (968)
.... =+..+...| +.++ ......++..+.+ ...+...+.... ++...-...+.++. ...+
T Consensus 181 ~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 181 PLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHHHHhC
Confidence 2211 111111111 1111 1122333333332 222222222221 22211111122222 2346
Q ss_pred HHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 040643 678 ALEAINLFEKMKKHD-VMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRARE 754 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~ 754 (968)
.+.|..++.+..... ..+... ....+.......+...++..+++..... ..+.+...--+..-.+.++++.+..
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~~~ 333 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGLNT 333 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHHHH
Confidence 688888888875433 333322 2333333333333366777777754222 1234444445555558999999999
Q ss_pred HHHhCCCC-CCHHHHHHHHH-HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 755 FTEQMPIE-PDAMVWRTLLS-ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 755 ~~~~m~~~-p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
.|..||-. -+..-|.--++ +....|+.+.|....+++.. + .+.|-.|+.
T Consensus 334 ~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 334 WLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 99998532 22334444333 34568999999999888744 2 346666654
No 301
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.63 E-value=14 Score=31.30 Aligned_cols=68 Identities=10% Similarity=0.225 Sum_probs=45.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
++.-+-.+.+.|++.+..+-|.|||.-+|+..|.++.+-+-..-.+....|-.+. .+++-.+.+-|+.
T Consensus 32 glN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l------------qElkPtl~ELGI~ 99 (108)
T PF02284_consen 32 GLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL------------QELKPTLEELGIP 99 (108)
T ss_dssp HHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH------------HHHHHHHHHHT--
T ss_pred HHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH------------HHHhhHHHHhCCC
Confidence 3333444578899999999999999999999999999988777655544554442 3566667777763
No 302
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=78.36 E-value=1.3e+02 Score=34.44 Aligned_cols=182 Identities=12% Similarity=0.110 Sum_probs=129.3
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMPEKN---EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSA 706 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 706 (968)
+..+|...++.-.+.|+.+.+.-+|++...|- ...|--.+.-....|+.+-|-.+.....+--++-.+++-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 46678888888889999999999999887552 234555555444558888887777666653333334443333445
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH---HHHHhC-CCCCCHHHHHHHHHH-----HH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR---EFTEQM-PIEPDAMVWRTLLSA-----CR 776 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~---~~~~~m-~~~p~~~~~~~ll~~-----~~ 776 (968)
+.+.|+.+.|..+++...+++ |+ .+.-.--+....|.|.++.+. +++... +..-+..+...+.-- ..
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 778999999999999998875 66 444444566788999999988 666554 433333333333221 45
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
+.++.+.|..+...+.+..|++-..|..+.++....+-
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999999999999998877763
No 303
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.90 E-value=33 Score=35.93 Aligned_cols=146 Identities=12% Similarity=0.058 Sum_probs=88.4
Q ss_pred cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhH----HhhHHHhcCCHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNS----LITLYAKCGSIDD 649 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~k~g~~~~ 649 (968)
+|+..+|-..++++.+. .+.|...+.-.=.+|...|+...-+..++.++.. ..+|...|.- +.-.+..||-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 56666666666666653 3445556666666777777777777666666543 2344433333 3344457899999
Q ss_pred HHHHHhcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C---hHHHHHHHHHHcccCcHHHHHHHHHH
Q 040643 650 AKREFLEMPEK---NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-N---HVTFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 650 A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d---~~t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
|++.-++..+- |..+-.+....+-.+|+.+++.++..+-... -+- + .-.|-...--+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99988877643 4445556677778889999998876653321 110 0 00122222234456788888888864
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.35 E-value=17 Score=37.65 Aligned_cols=97 Identities=12% Similarity=0.182 Sum_probs=71.2
Q ss_pred hCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CC--------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 040643 625 TGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-EK--------NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP 695 (968)
Q Consensus 625 ~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~--------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P 695 (968)
.|.+....+...+++.-....+++++...+-+.. .| ..++|--++.- =++++++.++..=++-|+.|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 3445555566677777777788888888776665 33 23344433333 36779999999888999999
Q ss_pred ChHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 696 NHVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 696 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|..|+..|+..+.|.|.+.+|.++...|..
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888887665533
No 305
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=77.12 E-value=69 Score=30.48 Aligned_cols=134 Identities=9% Similarity=0.043 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccC--ChhHHHHHHhhCC
Q 040643 199 ILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSG--NLTSAEQIFSKMQ 276 (968)
Q Consensus 199 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g--~~~~A~~~f~~m~ 276 (968)
++..+.+.+.+++|+...+..++..+.+.|.+....+ ++..++-+|.......+-.+.... -..-|...+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556666778888888888888888888887654443 344555555443333332222211 1233344444433
Q ss_pred CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 277 QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 277 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
..+..++..+...|++-+|+++.+.... -+...-..++.+..+.+|...--.++....+.
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~ 149 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER 149 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467788889999999999999877532 22333455667766666666666666655554
No 306
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=76.89 E-value=52 Score=34.88 Aligned_cols=129 Identities=13% Similarity=0.217 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHhcCCCCChhhHHHHHHHhhc--ccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 040643 477 GEALELFEEMENQGIQSDNIGFSSAISACAG--IQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 477 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
++.+.+++.|.+.|.+-+.++|.+..-.... ..+. .-....|..+|+
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~-------------------------------~~~~~ra~~iy~ 127 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDY-------------------------------DEIIQRAKEIYK 127 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccH-------------------------------HHHHHHHHHHHH
Confidence 3556677777888877777776553322221 1111 012334555555
Q ss_pred hCCCC-------CcccHHHHHHHHHhcCC----hhhHHHHHHHhhhcCCcCCc--chHHHHHHHHhhhhh--HHHHHHHH
Q 040643 555 KIDAK-------DNISWNGLISGFAQSGY----CEGALQVFSQMTQVGVQANL--YTFGSVVSAAANLAN--IKQGKQVH 619 (968)
Q Consensus 555 ~m~~~-------d~~~~~~li~~~~~~g~----~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~--~~~a~~~~ 619 (968)
.|.+. +-.++.+|+.. ..++ .+++...|+.+...|+..+. ...+.+|..+..... ...+..+.
T Consensus 128 ~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~ 205 (297)
T PF13170_consen 128 EMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELY 205 (297)
T ss_pred HHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 55432 33344444443 2222 24556677777777766644 234444444433322 44667777
Q ss_pred HHHHHhCCCCChhHHhHHh
Q 040643 620 AMIIKTGYDSETEASNSLI 638 (968)
Q Consensus 620 ~~~~~~g~~~~~~~~~~li 638 (968)
..+.+.|++.....|..+.
T Consensus 206 ~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 206 NALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHcCCccccccccHHH
Confidence 8888888877666666544
No 307
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.80 E-value=32 Score=32.47 Aligned_cols=55 Identities=20% Similarity=0.237 Sum_probs=35.5
Q ss_pred HHhcCCchHHHHHHhhCCCCCeehHHHHH-----HHHHcCCCHHHHHHHHHHHHhcCCCC
Q 040643 158 YAKNGFIDSAKKVFNNLCFKDSVSWVAMI-----SGFSQNGYEREAILLFCQMHILGTVP 212 (968)
Q Consensus 158 y~~~g~~~~A~~~f~~~~~~~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~g~~p 212 (968)
++..+..++|..-|..+...+.-+|-.|. ...++.|+...|+..|++.-.....|
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P 127 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIP 127 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCc
Confidence 35667777888888777655544554432 34567778888888888776654444
No 308
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=76.05 E-value=1.3e+02 Score=33.66 Aligned_cols=163 Identities=10% Similarity=0.139 Sum_probs=83.1
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSA 706 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a 706 (968)
.|-...-++++.++..-...-.+.+..+|. ..+-..+-.++..|..+ ..++-..+++++.+ ..-|.+.+.-.|.-
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHHH
Confidence 344444556666666555555555555555 33455666666666666 44556666666666 44555555555555
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC------cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK------PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPDAMVWRTLLSACR 776 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~------~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~~~~~~~ll~~~~ 776 (968)
+...++.+.+..+|.+... .+-|. .+.|.-++.+.+ .+.|.-+.++.+. +..--.+.+.-+-.-|.
T Consensus 141 ~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 141 KYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHhchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 5555666666666666542 23332 123333333222 2233333333333 11222333333333445
Q ss_pred hcCChhHHHHHHHHHHccCCCC
Q 040643 777 VHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
...|+..+.++...+++.+..|
T Consensus 217 ~~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 217 ENENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred cccCHHHHHHHHHHHhhhcchh
Confidence 5556666666666666655443
No 309
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.64 E-value=3.2 Score=38.57 Aligned_cols=85 Identities=13% Similarity=0.126 Sum_probs=61.9
Q ss_pred HHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHH
Q 040643 220 ALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKA 299 (968)
Q Consensus 220 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A 299 (968)
+++.+.+.+.+.....++..+++.+...+....+.|+..|++.++.+....+++... ..-...++..+-+.|.+++|
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHHH
Confidence 455666667777777777777777766778889999999999988888888887433 24456677777788888888
Q ss_pred HHHHHHhh
Q 040643 300 LELFEKMQ 307 (968)
Q Consensus 300 ~~l~~~m~ 307 (968)
.-++.++.
T Consensus 90 ~~Ly~~~~ 97 (143)
T PF00637_consen 90 VYLYSKLG 97 (143)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHcc
Confidence 88777764
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=75.33 E-value=4.4 Score=26.35 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN 696 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd 696 (968)
+|..+...|.+.|+.++|++.|++..+ +.||
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~--~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE--LNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH--HHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCC
Confidence 566777778888888888888888776 5553
No 311
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=74.85 E-value=20 Score=34.61 Aligned_cols=92 Identities=15% Similarity=0.034 Sum_probs=58.0
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPEKN------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP---NHVTFVG 702 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~~d------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d~~t~~~ 702 (968)
..+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+....--.+ +...-..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 356678888999999999999988877542 3356777788888888888887777665432222 2222122
Q ss_pred HHH--HHcccCcHHHHHHHHHHh
Q 040643 703 VLS--ACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 703 ll~--a~~~~g~~~~a~~~~~~m 723 (968)
+.. ++...|++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 222 233456666666666544
No 312
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=74.79 E-value=1.9e+02 Score=34.45 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=19.2
Q ss_pred eeHHHHHHHHHhc---CChhHHHHHHHHHHhc
Q 040643 461 VSWTAMIVGFVQH---GMFGEALELFEEMENQ 489 (968)
Q Consensus 461 ~~~~~li~~~~~~---g~~~~A~~l~~~m~~~ 489 (968)
.-+..||..|++. .++.+|+++|--+...
T Consensus 325 ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 325 LNFARLIGQYTRSFEITDPREALQYLYLICLF 356 (613)
T ss_dssp --HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred cCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence 4566788888764 6778888888776553
No 313
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=74.62 E-value=58 Score=35.55 Aligned_cols=65 Identities=18% Similarity=0.222 Sum_probs=53.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 763 PDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE----DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 763 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
....+|..+...|+.+|+++.|..+..++.+..+. .+...+.-+.+.-..|+-++|....+...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34778999999999999999999999999997632 456677779999999999999886444433
No 314
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.15 E-value=65 Score=31.78 Aligned_cols=127 Identities=16% Similarity=0.060 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhh-cCCCCCcchHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTE-YGLVPKPEHYACVVD 741 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~~~~y~~lv~ 741 (968)
|.+..|+.+.+.+...+|+.+.++-++ -+|. .-+-..++..++-.|++++|..-++...+- -...+....|..+|+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 345567778888899999998888877 4664 556777888889999999998777655321 122333455555554
Q ss_pred HHhhcCChHHHH-HHHHhC--CCCC--CHHHHHHHH-HH--HHhcCChhHHHHHHHHHHccCCCCc
Q 040643 742 LLGRAGCLSRAR-EFTEQM--PIEP--DAMVWRTLL-SA--CRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 742 ~l~r~G~~~eA~-~~~~~m--~~~p--~~~~~~~ll-~~--~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
. +.+. +++..- |--+ ....|-..| .+ |..-|.-+......+..++--|...
T Consensus 81 ~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~i 139 (273)
T COG4455 81 C-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPI 139 (273)
T ss_pred H-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCC
Confidence 3 2222 223221 3221 244565544 44 3444455667777888888887654
No 315
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.94 E-value=46 Score=30.71 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=47.4
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHh-cCChhHHH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRV-HKNMEIGE 785 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~-~g~~~~a~ 785 (968)
..++.+++..+++.|. -+.|+ .+.-.+-+-++.+.|+++||..++++..-.+ ....-.+|+..|-. .||.+ =.
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~-Wr 97 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE-WH 97 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH-HH
Confidence 3667777777777764 34555 3333444556677888888888888874333 33444566666643 34433 23
Q ss_pred HHHHHHHccC
Q 040643 786 YAANHLLELE 795 (968)
Q Consensus 786 ~~~~~~~~l~ 795 (968)
..+..+++-+
T Consensus 98 ~~A~~~le~~ 107 (153)
T TIGR02561 98 VHADEVLARD 107 (153)
T ss_pred HHHHHHHHhC
Confidence 3444444443
No 316
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.39 E-value=1.1e+02 Score=30.93 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=103.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 040643 604 SAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKN--EVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 604 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d--~~~~~~li~~~~~~g~~~~A 681 (968)
.++....++++++..+..+.+. .+.+...|.+ ....+.|.-+.+++.+-+ +..++--+..|..+|.++-|
T Consensus 39 vafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtA 110 (308)
T KOG1585|consen 39 VAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTA 110 (308)
T ss_pred HHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchH
Confidence 3455556666666655444431 1222222221 122344444444444221 23456677899999998887
Q ss_pred HHHHHHHHH--CCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 040643 682 INLFEKMKK--HDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757 (968)
Q Consensus 682 ~~l~~~m~~--~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~ 757 (968)
--.+++.-+ +.++||.. .|.--+......+....| .+.|+-...+|.|..+++||-..+.
T Consensus 111 AmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Eaa~a~l 174 (308)
T KOG1585|consen 111 AMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEAATAFL 174 (308)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHHHHHHH
Confidence 777766543 24677643 232222222222222222 3446666788999999999877666
Q ss_pred hCC-----CCCCHHHHHHHHH---HHHhcCChhHHHHHHHHHHcc----CCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 758 QMP-----IEPDAMVWRTLLS---ACRVHKNMEIGEYAANHLLEL----EPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 758 ~m~-----~~p~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~l----~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
+-. +..-.......++ .+.-..|+..|++..+.--++ .|+++.+...|...| ..|+-+++.+|.
T Consensus 175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 541 1211222222222 333445788888888775554 566666666665554 457777766653
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.54 E-value=22 Score=36.81 Aligned_cols=101 Identities=15% Similarity=0.148 Sum_probs=69.6
Q ss_pred cCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC-CCc-----ccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCccc
Q 040643 244 GFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ-RDG-----VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVT 317 (968)
Q Consensus 244 g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~-~~~-----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 317 (968)
|....+.+...++..-....+++++...+-++.. |+. .+-.+.++- +-.-++++++.++..=...|+-||.+|
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl-llky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH-HHccChHHHHHHHhCcchhccccchhh
Confidence 4445555666667766667788888877766653 221 122223332 334467788888888888899999999
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVG 345 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g 345 (968)
+..++..+.+.+++..|.++.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999988888888888777666554
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=72.53 E-value=4.4 Score=24.69 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=19.9
Q ss_pred chHHHHHHHHhhcCCcchHHHHHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
..+..|+.+|...|++++|..+.+
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456789999999999999987643
No 319
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.45 E-value=2.8 Score=43.73 Aligned_cols=86 Identities=14% Similarity=0.201 Sum_probs=59.6
Q ss_pred cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 746 AGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 746 ~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
.|.+++|.+.+.+. ++.|. +..+..-.+++...+....|++-+..+++++|+.+..|-.-+......|.|++|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~ 206 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLA 206 (377)
T ss_pred CcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHH
Confidence 45566666666655 55555 34444444556666777778888888888888888888888888888888888887666
Q ss_pred HHHhCCCc
Q 040643 824 IMKDRGVK 831 (968)
Q Consensus 824 ~m~~~g~~ 831 (968)
..-+.+..
T Consensus 207 ~a~kld~d 214 (377)
T KOG1308|consen 207 LACKLDYD 214 (377)
T ss_pred HHHhcccc
Confidence 55555543
No 320
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.04 E-value=42 Score=28.43 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=47.2
Q ss_pred hHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVG 702 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ 702 (968)
..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|..+| .|...+|..
T Consensus 47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Faa 107 (115)
T TIGR02508 47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFVA 107 (115)
T ss_pred HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHHH
Confidence 34567899999999999999999999977755 46788888888888888776 565555543
No 321
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.52 E-value=3.5 Score=27.13 Aligned_cols=18 Identities=11% Similarity=0.146 Sum_probs=7.6
Q ss_pred HHHHHHHHHcccCcHHHH
Q 040643 699 TFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a 716 (968)
.|..+...+...|++++|
T Consensus 15 a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 15 AYNNLANLYLNQGDYEEA 32 (34)
T ss_pred HHHHHHHHHHHCcCHHhh
Confidence 344444444444444443
No 322
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=70.93 E-value=4.6 Score=41.90 Aligned_cols=80 Identities=11% Similarity=0.055 Sum_probs=61.6
Q ss_pred HHHhhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchH
Q 040643 741 DLLGRAGCLSRAREFTEQ-MPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~-m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 818 (968)
.-|.+.|+++||.+.+.+ |...| |++.+..-..||...+.+..|+.-.+.++.|+-.-.-+|..-+..-.+.|+..||
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EA 184 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNMEA 184 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 446678888899888765 46677 6777777777888888888999888888888876667777777777777777776
Q ss_pred HH
Q 040643 819 DQ 820 (968)
Q Consensus 819 ~~ 820 (968)
.+
T Consensus 185 Kk 186 (536)
T KOG4648|consen 185 KK 186 (536)
T ss_pred HH
Confidence 55
No 323
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.58 E-value=99 Score=29.36 Aligned_cols=119 Identities=13% Similarity=0.100 Sum_probs=82.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH-----HHHHhh
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV-----VDLLGR 745 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-----v~~l~r 745 (968)
+++.|..++|+.-|.++.+.|...-++ ...-........|+..+|..+|++.-.+ .|.+....-+ .-+|.-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhc
Confidence 467788889999999998877654433 3344455677889999999999988655 3333322222 235667
Q ss_pred cCChHHHHHHHHhCCC--CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 746 AGCLSRAREFTEQMPI--EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 746 ~G~~~eA~~~~~~m~~--~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
.|.+++..+.++.+.. .|- ...-.+|--+-.+.|++..|...++.+..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8999988888887732 332 34445666667788999999888888776
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.03 E-value=10 Score=25.83 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777777654
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=69.56 E-value=28 Score=29.31 Aligned_cols=63 Identities=19% Similarity=0.307 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 677 YALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
+.-++.+-++.+....+.|++....+.|.||.+..++.-|.++|+..+.+-|. ..+.|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 34466666777777789999999999999999999999999999988654332 3445665553
No 326
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.47 E-value=39 Score=32.66 Aligned_cols=59 Identities=10% Similarity=0.054 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHhhcccCchHHHHHHHHHH
Q 040643 182 WVAMISGFSQNGYEREAILLFCQMHILGTVPTP--YAISSALSACTKIELFEIGEQFHGLI 240 (968)
Q Consensus 182 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~ 240 (968)
|..+..-|.+.|+.++|++.|.+++.....|.. ..+..+|+.+...+++..+......+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 444555566666666666666666554333322 23444555555555555555444443
No 327
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=67.42 E-value=32 Score=29.30 Aligned_cols=61 Identities=21% Similarity=0.338 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
-+..+-++.+....+.|++....+.|.||.+..++.-|.++|+..+.+-| +..+.|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 35556666677777899999999999999999999999999998876544 33447777764
No 328
>PF15161 Neuropep_like: Neuropeptide-like
Probab=67.06 E-value=2.6 Score=30.41 Aligned_cols=18 Identities=33% Similarity=0.888 Sum_probs=12.5
Q ss_pred cccccCChhhHHHHHHHHh
Q 040643 923 KNLRVCNDCHNWIKFVSKI 941 (968)
Q Consensus 923 kn~r~c~dch~~~k~~s~~ 941 (968)
-.-|-|.|||.+ .|+-+.
T Consensus 11 aesRPCVDCHAF-efmqRA 28 (65)
T PF15161_consen 11 AESRPCVDCHAF-EFMQRA 28 (65)
T ss_pred CCCCCchhhHHH-HHHHHH
Confidence 357899999955 466543
No 329
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=66.54 E-value=13 Score=35.30 Aligned_cols=64 Identities=25% Similarity=0.375 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc----HHHHHHHHHHhhhhc----CCCCCcchHHHHHHHH
Q 040643 678 ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL----VNEGLRYFESMSTEY----GLVPKPEHYACVVDLL 743 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~----~~~a~~~~~~m~~~~----~i~p~~~~y~~lv~~l 743 (968)
+++|++-|++.+. +.|+ +.++..+..|+...|. ..+|..+|++...-+ ..+|+-+.|.--.++.
T Consensus 51 iedAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 51 IEDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 4567777777777 8898 4688888888776543 233334443332211 2467777776555554
No 330
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=66.46 E-value=22 Score=34.64 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=48.1
Q ss_pred HHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CcchHHHHHHHHhhcCCcchH
Q 040643 750 SRAREFTEQMPIEP--DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE----DSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 750 ~eA~~~~~~m~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a 818 (968)
++|...|-.+.-.| +.......|+.+....|.+.+....-+++++.+. |+..+..|+++|...|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34554444442222 2334445666677788899999999999988543 578888999999999998876
No 331
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.01 E-value=61 Score=32.48 Aligned_cols=78 Identities=9% Similarity=-0.077 Sum_probs=53.6
Q ss_pred cCCHHHHHHHHhcCC--CCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHcccCcHHHHHHH
Q 040643 644 CGSIDDAKREFLEMP--EKNE-VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT-FVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~--~~d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~ 719 (968)
...++.|..-+.+.. .|++ .-|+.-+-.|.+..+++.+.+--.+.++ +.||.+- ...+..+...+..+++|+..
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 344555665555443 6666 4567778888888888888888777777 8898774 44555566677777777777
Q ss_pred HHHh
Q 040643 720 FESM 723 (968)
Q Consensus 720 ~~~m 723 (968)
+...
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 6544
No 332
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=65.95 E-value=33 Score=29.05 Aligned_cols=60 Identities=17% Similarity=0.149 Sum_probs=45.1
Q ss_pred HHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccH
Q 040643 256 VTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTV 318 (968)
Q Consensus 256 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 318 (968)
+..+...|++++|..+.+....||...|-+|-.. +.|..+++..-+.+|...| .|...+|
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~sg-~p~lq~F 105 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAASG-DPRLQTF 105 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence 4567788999999999999999999999888654 5677777777777776665 3443333
No 333
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.43 E-value=1.3e+02 Score=35.26 Aligned_cols=88 Identities=17% Similarity=0.155 Sum_probs=53.4
Q ss_pred ChHHHHHHHHhCC--CCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc-CCcchHHHHH
Q 040643 748 CLSRAREFTEQMP--IEPDAMVWRTLLSACR--VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA-GKWDCRDQIR 822 (968)
Q Consensus 748 ~~~eA~~~~~~m~--~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~ 822 (968)
+...|.+++.... -.+++..|-+++..+- ...|.+.|...++++-+.+ ++.+...++..|+-. ++++.+.-..
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHH
Confidence 3456666666652 2334444433333322 3347778888888888887 455566666665544 8888888877
Q ss_pred HHHHhCCCccCCccc
Q 040643 823 QIMKDRGVKKEPGQS 837 (968)
Q Consensus 823 ~~m~~~g~~k~~g~s 837 (968)
..+++.|.+-.-..+
T Consensus 421 ~~~a~~g~~~~q~~a 435 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNA 435 (552)
T ss_pred HHHHHhhhhHHhhHH
Confidence 777777765433333
No 334
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.62 E-value=88 Score=35.71 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=14.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 040643 464 TAMIVGFVQHGMFGEALELFEEM 486 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m 486 (968)
|.-..+|...|+++++++++.+-
T Consensus 725 N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred chHHHHHHHcCCHHHHHHHHHhc
Confidence 33345566778888887777553
No 335
>PF13934 ELYS: Nuclear pore complex assembly
Probab=63.58 E-value=1.1e+02 Score=31.07 Aligned_cols=102 Identities=25% Similarity=0.309 Sum_probs=50.0
Q ss_pred HHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc---chHHHHH
Q 040643 666 NAMITGF--SQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP---EHYACVV 740 (968)
Q Consensus 666 ~~li~~~--~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~---~~y~~lv 740 (968)
...+.|| ..|+++++|++++-.- .+.|+... -++.++...|..+.|..|++.+ .|.. +.-..+.
T Consensus 80 ~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~------~p~l~s~~~~~~~~ 148 (226)
T PF13934_consen 80 IKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAV------GPPLSSPEALTLYF 148 (226)
T ss_pred HHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhc------CCCCCCHHHHHHHH
Confidence 3344443 3455666666655211 12222111 2445555567777777777654 2222 2222222
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK 779 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 779 (968)
.+ ...|.+.||..+.++.+-+-....|..++..|..+.
T Consensus 149 ~~-La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 149 VA-LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HH-HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 33 334677777777766543222446666666665444
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=63.24 E-value=11 Score=23.11 Aligned_cols=27 Identities=22% Similarity=0.135 Sum_probs=12.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
.+...+...|+.+.|....++++++.|
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 333334444455555555555554444
No 337
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=62.90 E-value=12 Score=41.11 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=67.7
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 740 VDLLGRAGCLSRAREFTEQM-PIEPDAMV-WRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m-~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
.+-+...+.++.|..++.+. .++||-++ |..=..+..+.+++..|..-+.+++|++|...-.|+.-+..+-+.+++.+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence 44455667788888887776 77887444 43333667788999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q 040643 818 RDQIRQI 824 (968)
Q Consensus 818 a~~~~~~ 824 (968)
|....+.
T Consensus 91 A~~~l~~ 97 (476)
T KOG0376|consen 91 ALLDLEK 97 (476)
T ss_pred HHHHHHH
Confidence 9876654
No 338
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.63 E-value=1.7e+02 Score=29.30 Aligned_cols=97 Identities=15% Similarity=0.272 Sum_probs=56.8
Q ss_pred cHHHHHHHHHHhhhhcCCCC-CcchHHHHH---HHHhhcCChHHHHHHHHhC---CCCCCHHHHH---HHHHH--HHhc-
Q 040643 712 LVNEGLRYFESMSTEYGLVP-KPEHYACVV---DLLGRAGCLSRAREFTEQM---PIEPDAMVWR---TLLSA--CRVH- 778 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv---~~l~r~G~~~eA~~~~~~m---~~~p~~~~~~---~ll~~--~~~~- 778 (968)
++++|+.+++..-+-|..+- +...--|++ +.-+..|++.+|.+++++. .+..+..-|+ .++.+ |...
T Consensus 129 d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~ 208 (288)
T KOG1586|consen 129 DFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCK 208 (288)
T ss_pred HHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhc
Confidence 44555555555433332222 122223443 4456678888999998876 3444444443 34443 7666
Q ss_pred CChhHHHHHHHHHHccCCCCcc--hHHHHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSA--TYVLLSNI 808 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~--~~~~l~~~ 808 (968)
.|.--+.++.++-.+++|.-++ -+-+|..+
T Consensus 209 ~D~v~a~~ALeky~~~dP~F~dsREckflk~L 240 (288)
T KOG1586|consen 209 ADEVNAQRALEKYQELDPAFTDSRECKFLKDL 240 (288)
T ss_pred ccHHHHHHHHHHHHhcCCcccccHHHHHHHHH
Confidence 7888899999999999997443 34444433
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=62.50 E-value=39 Score=37.07 Aligned_cols=120 Identities=18% Similarity=0.232 Sum_probs=78.7
Q ss_pred cCCHHHHH-HHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHH
Q 040643 675 HGYALEAI-NLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 675 ~g~~~~A~-~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~ 753 (968)
.|+...|- ++|.-+....-.|+.+...+.+ .+|.|.++.+...+....+ -+.....+..|++.-+...|++++|+
T Consensus 302 ~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 302 DGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred ccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHH
Confidence 45554443 4566666555567766555554 4678888888888776533 23445667788888888888888888
Q ss_pred HHHHhC---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 754 EFTEQM---PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 754 ~~~~~m---~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
.+-+-| .++ +..+...-.++.+..|-++.+...-++++.+.|+..
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 887777 222 233333344455666778888888888888877533
No 340
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=62.43 E-value=3.6 Score=39.30 Aligned_cols=11 Identities=55% Similarity=1.084 Sum_probs=8.3
Q ss_pred cccccCChhhH
Q 040643 923 KNLRVCNDCHN 933 (968)
Q Consensus 923 kn~r~c~dch~ 933 (968)
.|+-.|.-||.
T Consensus 179 dnlk~Cn~Ch~ 189 (235)
T KOG4718|consen 179 DNLKNCNLCHC 189 (235)
T ss_pred HHHHHHhHhHH
Confidence 47888888884
No 341
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=61.86 E-value=83 Score=29.07 Aligned_cols=51 Identities=18% Similarity=0.165 Sum_probs=36.1
Q ss_pred CCeehHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCChhhHHHHHHhhccc
Q 040643 177 KDSVSWVAMISGFSQNGY-EREAILLFCQMHILGTVPTPYAISSALSACTKI 227 (968)
Q Consensus 177 ~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~ 227 (968)
.+..+|++++.+.++... ---+..+|.-|.+.+.++++.-|..++++|.+.
T Consensus 77 ~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 77 LDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 355677888877766655 345667777777777777778888888777654
No 342
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=60.64 E-value=13 Score=22.57 Aligned_cols=21 Identities=14% Similarity=0.078 Sum_probs=13.8
Q ss_pred HHHHHHHhhcCChHHHHHHHH
Q 040643 737 ACVVDLLGRAGCLSRAREFTE 757 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~ 757 (968)
..+...+.+.|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345666777777777776654
No 343
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=60.42 E-value=58 Score=35.69 Aligned_cols=64 Identities=14% Similarity=0.173 Sum_probs=48.3
Q ss_pred CHHHHHHHHH---HHHhcCChhHHHHHHHHHHccCCC-CcchHHHHHHHHh-hcCCcchHHHHHHHHHh
Q 040643 764 DAMVWRTLLS---ACRVHKNMEIGEYAANHLLELEPE-DSATYVLLSNIYA-AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 764 ~~~~~~~ll~---~~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~-~~g~~~~a~~~~~~m~~ 827 (968)
|-..|.+|.. .....|-+.-|.+.++-++.++|. |+-.-.+....|+ ++++|+--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 4555555544 456788999999999999999999 8877777777777 56777777777665543
No 344
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.38 E-value=19 Score=42.44 Aligned_cols=123 Identities=19% Similarity=0.284 Sum_probs=82.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRARE 754 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~ 754 (968)
+.++++.+.+.+...--| .+++.-+.+.|-.+-|+.+.+.=...+ ++....|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 345555555444332222 234445566777777776655333322 34456899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCcc
Q 040643 755 FTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKK 832 (968)
Q Consensus 755 ~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k 832 (968)
.-++. .|..+|..|......+||.+.+|..+++.-. +..|+-+|.-.|+.+ +++|+|+-..+++
T Consensus 665 ~akkl---dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~e---KL~Km~~iae~r~ 728 (1202)
T KOG0292|consen 665 AAKKL---DDKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLE---KLSKMMKIAEIRN 728 (1202)
T ss_pred HHHhc---CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHH---HHHHHHHHHHhhh
Confidence 88775 3688999999999999999999999998654 456777888888865 5566665443433
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=59.56 E-value=67 Score=36.48 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=63.3
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCC--CHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMPEK--NEV---SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH 709 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~~~--d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~ 709 (968)
..|+.-|.+++++++|..++..|.-. ... +.+.+.+.+.+..-..+....++.++-.=..|-.-.-..+...|..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algsF~ap~rpl~~~~~~ey~d 491 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGSFYAPTRPLSDATVLEYRD 491 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhhccCCCcCccHHHHHHHHH
Confidence 35777899999999999999998721 122 3333344444443344444444444432222211100000000100
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEY 786 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~ 786 (968)
--.+-|+++| .-+.|.+++++|..+--+.. +...+.-+=......|+.++|+.
T Consensus 492 -~V~~~aRRfF--------------------hhLLR~~rfekAFlLAvdi~---~~DLFmdlh~~A~~~ge~~La~~ 544 (545)
T PF11768_consen 492 -PVSDLARRFF--------------------HHLLRYQRFEKAFLLAVDIG---DRDLFMDLHYLAKDKGELALAEV 544 (545)
T ss_pred -HHHHHHHHHH--------------------HHHHHhhHHHHHHHHHHhcc---chHHHHHHHHHHHhccchhhhhc
Confidence 0011233333 34557788888887766553 22223333344456677776654
No 346
>PF13934 ELYS: Nuclear pore complex assembly
Probab=59.16 E-value=72 Score=32.27 Aligned_cols=115 Identities=12% Similarity=0.109 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHH
Q 040643 644 CGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
.+++++|.+.+-.-. .|+-..| ++.++..+|+.+.|+.+++.+.-..-.|+ ....++.+ ...|.+.||+.+-++
T Consensus 91 ~~~~~~A~~~L~~ps~~~~~~~~--Il~~L~~~~~~~lAL~y~~~~~p~l~s~~--~~~~~~~~-La~~~v~EAf~~~R~ 165 (226)
T PF13934_consen 91 HGDFEEALELLSHPSLIPWFPDK--ILQALLRRGDPKLALRYLRAVGPPLSSPE--ALTLYFVA-LANGLVTEAFSFQRS 165 (226)
T ss_pred hHhHHHHHHHhCCCCCCcccHHH--HHHHHHHCCChhHHHHHHHhcCCCCCCHH--HHHHHHHH-HHcCCHHHHHHHHHh
Confidence 467778877775432 2222223 77788888999999998887533222222 22223333 445899999988776
Q ss_pred hhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 040643 723 MSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMV 767 (968)
Q Consensus 723 m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~ 767 (968)
.... -....+.+++..+.....-....+.+-++|+.+....
T Consensus 166 ~~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE~ 206 (226)
T PF13934_consen 166 YPDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEEQ 206 (226)
T ss_pred Cchh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHHH
Confidence 6432 1144566777666644432334445556788877443
No 347
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=58.20 E-value=14 Score=23.55 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=14.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040643 668 MITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
+..+|.+.|+.++|++.|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44555666677777777776665
No 348
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=57.60 E-value=12 Score=33.88 Aligned_cols=68 Identities=22% Similarity=0.295 Sum_probs=49.2
Q ss_pred cCEEEEEecCC-CCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCCCCEE
Q 040643 842 KNSIHAFFVGD-RLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPIL 920 (968)
Q Consensus 842 ~~~~~~f~~~d-~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~ 920 (968)
.+..-.|..|| ..||++..+--.|++|.+++.. . ...++--|++ +.+.||--||+.+.| ++-
T Consensus 34 ~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~--~v~~akVDiD----------~~~~LA~~fgV~siP---TLl 96 (132)
T PRK11509 34 APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--Y--TWQVAIADLE----------QSEAIGDRFGVFRFP---ATL 96 (132)
T ss_pred CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--C--ceEEEEEECC----------CCHHHHHHcCCccCC---EEE
Confidence 34455699999 6789999999999999887631 1 1234445555 357899999999998 566
Q ss_pred Eecccc
Q 040643 921 VIKNLR 926 (968)
Q Consensus 921 ~~kn~r 926 (968)
++||-+
T Consensus 97 ~FkdGk 102 (132)
T PRK11509 97 VFTGGN 102 (132)
T ss_pred EEECCE
Confidence 666543
No 349
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=57.51 E-value=39 Score=37.33 Aligned_cols=108 Identities=22% Similarity=0.242 Sum_probs=59.7
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc---CCh
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA---GCL 749 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~---G~~ 749 (968)
...|++.+|+..|+..+. ...+.........+++.+++...+ +| ..+.-+.+-.|. ...
T Consensus 215 ~t~gKF~eA~~~Fr~iL~----------~i~l~vv~~~~E~~e~~eli~icr-EY-------ilgl~iEl~Rr~l~~~~~ 276 (422)
T PF06957_consen 215 FTAGKFEEAIEIFRSILH----------SIPLLVVESREEEDEAKELIEICR-EY-------ILGLSIELERRELPKDPV 276 (422)
T ss_dssp HHTT-HHHHHHHHHHHHH----------HHHC--BSSCHHHHHHHHHHHHHH-HH-------HHHHHHHHHHCTS-TTTH
T ss_pred HhcCCHHHHHHHHHHHHH----------HhheeeecCHHHHHHHHHHHHHHH-HH-------HHHHHHHHHHHhccccch
Confidence 467889999999988765 122222222333555555554432 21 112222222222 122
Q ss_pred HH---HHH---HHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 750 SR---ARE---FTEQMPIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 750 ~e---A~~---~~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
++ ..+ +|....++|. ..++++-++.+.+++|+.-|-..+++++++.|..
T Consensus 277 ~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 277 EDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 22 222 3444467776 6778888888999999999999999999999843
No 350
>PRK09687 putative lyase; Provisional
Probab=57.43 E-value=2.5e+02 Score=29.49 Aligned_cols=60 Identities=10% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040643 347 SKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQT 409 (968)
Q Consensus 347 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 409 (968)
+++..+-..-+....+.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 3344444445555555555332222233333333 233556666777764 56666666665
No 351
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.18 E-value=3.8e+02 Score=32.99 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=70.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhh
Q 040643 181 SWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYS 260 (968)
Q Consensus 181 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 260 (968)
-|..|+.-|...|..++|++++.+.....-.-|.. ..+.-+.+.+.+.+.+-+.. .||--|+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~-------------~~~~~e~ii~YL~~l~~~~~-----~Li~~y~ 567 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSF-------------QLDGLEKIIEYLKKLGAENL-----DLILEYA 567 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccc-------------hhhhHHHHHHHHHHhcccch-----hHHHHHh
Confidence 38889999999999999999999986532100100 01111223444444442211 1222222
Q ss_pred c---cCChhHHHHHHhhCCC--CCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhc
Q 040643 261 R---SGNLTSAEQIFSKMQQ--RDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACAS 327 (968)
Q Consensus 261 ~---~g~~~~A~~~f~~m~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 327 (968)
. ..+.+...++|-.-.. -...+-. -+-.|.....++-+...++.+....-.++..-.+.++.-|+.
T Consensus 568 ~wvl~~~p~~gi~Ift~~~~~~~~sis~~-~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 568 DWVLNKNPEAGIQIFTSEDKQEAESISRD-DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCchhheeeeeccChhhhccCCHH-HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1 2445566666654111 0111122 233466777788888888888876666666666777666643
No 352
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=56.87 E-value=25 Score=29.92 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=51.2
Q ss_pred cccchhccHHHHHHHHhhcCCCCCCEEEecccccCChhhHHHHHHHHhhcceEEEecCC
Q 040643 894 DPCVYIHSEKLAIAFGLLSLSDSMPILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDAN 952 (968)
Q Consensus 894 ~~~~~~hse~la~~~~~~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 952 (968)
+..|..|.|.-++--=-.+.-+|..+-|.--.+-|..|-.+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 35688999998887666666669999999999999999999999999999999988754
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=56.32 E-value=7e+02 Score=34.27 Aligned_cols=60 Identities=10% Similarity=0.004 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
..+|..+..-+|..|.++.|..+.-++.+.. -+..++-.+...-..|+-..|..+.+.--
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7789999999999999999999988888877 46788899999999999999988766544
No 354
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=56.22 E-value=2.5e+02 Score=30.99 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=43.5
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcC
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVG 591 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 591 (968)
..|+.-|...|++.+|.+...++.-| ..+.+.+++.+.-+.|+.+..+.++++....|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 35777788888888888888877665 45677888888888887777777777766554
No 355
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=56.14 E-value=1.6e+02 Score=26.80 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=25.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
|.-+|.+.|+++.+.+..+.+++.+|+|..+..+
T Consensus 77 LAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 77 LAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 3445777888999999999999999977655433
No 356
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=55.82 E-value=5.2e+02 Score=32.60 Aligned_cols=48 Identities=15% Similarity=0.041 Sum_probs=19.7
Q ss_pred CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 040643 732 KPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHK 779 (968)
Q Consensus 732 ~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g 779 (968)
+...-...+..|++.|.-+.+...+..+--.||..+-..-+.++...+
T Consensus 788 d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~ 835 (897)
T PRK13800 788 DPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAA 835 (897)
T ss_pred CHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 344444455555555544333222322222344333333444443333
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=54.62 E-value=22 Score=24.07 Aligned_cols=27 Identities=15% Similarity=0.182 Sum_probs=21.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 040643 181 SWVAMISGFSQNGYEREAILLFCQMHI 207 (968)
Q Consensus 181 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 207 (968)
+++.|...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 577888888888899888888888654
No 358
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=53.81 E-value=1.3e+02 Score=30.24 Aligned_cols=45 Identities=11% Similarity=-0.042 Sum_probs=36.6
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+.|++-.++.-...++..+|.|.-+|+.-+...+..=+-++|..-
T Consensus 242 ~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D 286 (329)
T KOG0545|consen 242 KKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKAD 286 (329)
T ss_pred hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHH
Confidence 567888888889999999999999999998887766555566543
No 359
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=53.78 E-value=23 Score=21.55 Aligned_cols=27 Identities=19% Similarity=0.226 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
.|..+...+...|+.++|...|++.++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 456666777777777777777777665
No 360
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.64 E-value=2.5e+02 Score=28.28 Aligned_cols=148 Identities=13% Similarity=0.104 Sum_probs=74.5
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChH-HHHHHHHHHcccCcHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMK----KHDVMPNHV-TFVGVLSACSHVGLVN 714 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~Pd~~-t~~~ll~a~~~~g~~~ 714 (968)
.++-.+.+++|.++|.+.. +.|-...++..|-..|.+.- +.|-+-|.. ||+-... |.+.++.+
T Consensus 23 lfgg~~k~eeAadl~~~Aa-----------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~-cykk~~~~ 90 (288)
T KOG1586|consen 23 LFGGSNKYEEAAELYERAA-----------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAAN-CYKKVDPE 90 (288)
T ss_pred ccCCCcchHHHHHHHHHHH-----------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HhhccChH
Confidence 3455567888888877653 22222233333333333222 233344433 3443333 44445666
Q ss_pred HHHHHHHHhhhhc----CCCCCcchHHHHHHHHhhc-CChHHHHHHHHhC-----CCCCCHHHHHHHHHH---HHhcCCh
Q 040643 715 EGLRYFESMSTEY----GLVPKPEHYACVVDLLGRA-GCLSRAREFTEQM-----PIEPDAMVWRTLLSA---CRVHKNM 781 (968)
Q Consensus 715 ~a~~~~~~m~~~~----~i~p~~~~y~~lv~~l~r~-G~~~eA~~~~~~m-----~~~p~~~~~~~ll~~---~~~~g~~ 781 (968)
+|...++...+-| ...-...|+-.+.++|..- -++++|...++.. .-+.+...-..+|.. -...+++
T Consensus 91 eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY 170 (288)
T KOG1586|consen 91 EAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQY 170 (288)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 6665555332221 1222344555566666554 5666676666665 112223333334433 2345677
Q ss_pred hHHHHHHHHHHccCCCCc
Q 040643 782 EIGEYAANHLLELEPEDS 799 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~ 799 (968)
+.|..+.+++..-.-+|+
T Consensus 171 ~~Ai~iyeqva~~s~~n~ 188 (288)
T KOG1586|consen 171 SKAIDIYEQVARSSLDNN 188 (288)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 888888888776655554
No 361
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=52.94 E-value=18 Score=35.66 Aligned_cols=59 Identities=27% Similarity=0.403 Sum_probs=47.5
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
++...|+.+-|-+++++. ...|+ ...|--+-..-.+.|+++.|.++.++.++++|+|.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 355678888888888887 55565 788888877788899999999999999999998654
No 362
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=52.16 E-value=2.6e+02 Score=29.24 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=69.8
Q ss_pred CChhHHHHHHHHHHh-cCCCCChhhHHHHHHHhhc-c-cchhhhhhhhHhhhh-hcCCCCchhhhhHHHHHHHcCCHHHH
Q 040643 474 GMFGEALELFEEMEN-QGIQSDNIGFSSAISACAG-I-QALNQGRQIHAQSYI-SGFSDDLSIGNALISLYARCGRIQEA 549 (968)
Q Consensus 474 g~~~~A~~l~~~m~~-~g~~pd~~t~~~ll~a~~~-~-~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A 549 (968)
....+|+.+|+...- +.+--|......+++.... . ..+..--++...+.. .+-.++..+...+++.+++.+++..-
T Consensus 142 ~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl 221 (292)
T PF13929_consen 142 KIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKL 221 (292)
T ss_pred HHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHH
Confidence 334566666663322 2345566666666665544 1 123333344444443 23456667777888888888888888
Q ss_pred HHHHHhCC-----CCCcccHHHHHHHHHhcCChhhHHHHHHH
Q 040643 550 YLVFNKID-----AKDNISWNGLISGFAQSGYCEGALQVFSQ 586 (968)
Q Consensus 550 ~~~f~~m~-----~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 586 (968)
.++++... ..|...|...|..-..+|+..-..++..+
T Consensus 222 ~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 222 FQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88887543 34777899999998888887655554443
No 363
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.54 E-value=1.2e+02 Score=29.50 Aligned_cols=22 Identities=14% Similarity=0.067 Sum_probs=17.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 040643 669 ITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 669 i~~~~~~g~~~~A~~l~~~m~~ 690 (968)
..-+..+|++++|..-|.+.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale 123 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALE 123 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHH
Confidence 3457778888888888888887
No 364
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.47 E-value=3.2e+02 Score=30.71 Aligned_cols=112 Identities=18% Similarity=0.040 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHh---cCC-CCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHH
Q 040643 196 REAILLFCQMHI---LGT-VPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQI 271 (968)
Q Consensus 196 ~~A~~~~~~m~~---~g~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 271 (968)
++...++.+... .|+ ..+......++..+ .|+...+..+.+.+...+-.. ..+....+
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~I----------------t~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSI----------------TLELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCC----------------CHHHHHHH
Confidence 444444444332 133 45555555555544 577777777776655431111 12222333
Q ss_pred HhhC---CCCCcccHHHHHHHHHc---CCChhHHHHHHHHhhccccCCCcccHHHHHHHH
Q 040643 272 FSKM---QQRDGVTYNSLISGLAQ---CGYSDKALELFEKMQLDCLKPDCVTVASLVSAC 325 (968)
Q Consensus 272 f~~m---~~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 325 (968)
+... ..++...+..+++++.+ .++++.|+..+.+|.+.|..|....-..++.++
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3221 12233345566666665 578999999999999998887755544444443
No 365
>PHA02875 ankyrin repeat protein; Provisional
Probab=51.47 E-value=3.8e+02 Score=29.96 Aligned_cols=69 Identities=12% Similarity=0.030 Sum_probs=38.2
Q ss_pred HHHHHHHhCCCCCcc--cchhhHHhhhhCCCcchHHHhhhccCCCCcc--chHHHHHHHHhcCChhhHHHHHH
Q 040643 32 IHGKILKLGFDGEQV--LCDKFFNIYLTSGDLDSAMKIFDDMSKRTVF--SWNKLISGFVAKKLSGRVLGLFL 100 (968)
Q Consensus 32 ~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~ 100 (968)
+...+++.|..|+.. ...+.+...++.|+.+-..-+++.-..++.. ...+.+...+..|+.+.+..+++
T Consensus 17 iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~ 89 (413)
T PHA02875 17 IARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLD 89 (413)
T ss_pred HHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHH
Confidence 445556678777653 3556666667778887766666543333321 11223444456677666544443
No 366
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=51.30 E-value=1.2e+02 Score=33.49 Aligned_cols=122 Identities=16% Similarity=0.071 Sum_probs=63.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHc--ccCcHHHHHHHHHHhhhhcCC-CCCcchHHHHHHHHhhc
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHV--TFVGVLSACS--HVGLVNEGLRYFESMSTEYGL-VPKPEHYACVVDLLGRA 746 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~--~~g~~~~a~~~~~~m~~~~~i-~p~~~~y~~lv~~l~r~ 746 (968)
+..++++..|.++|+++... +.++.. .+..+..+|. ..-++++|.++|+........ .-...+...++..+-..
T Consensus 141 l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~ 219 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKAL 219 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHH
Confidence 33667888888888888876 555543 2333334443 356678888888876443111 01123344444443333
Q ss_pred CChHHHHHHHHhCCCCCC-HHHHHHHHHHHH--hcCChhHHHHHHHHHHcc
Q 040643 747 GCLSRAREFTEQMPIEPD-AMVWRTLLSACR--VHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 747 G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l 794 (968)
..+..+.+....-+-.|. ..+..-+.+|-| ..|+++.|..-.-+++|+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl 270 (379)
T PF09670_consen 220 ESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL 270 (379)
T ss_pred HhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 333333332222221222 344444555554 367777777666666664
No 367
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=50.29 E-value=24 Score=22.36 Aligned_cols=23 Identities=22% Similarity=0.210 Sum_probs=10.7
Q ss_pred HHHHHHHhhcCCcchHHHHHHHH
Q 040643 803 VLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 803 ~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
..++.+|...|++++|.+..+.+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHH
Confidence 34444444455555554444333
No 368
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=50.28 E-value=29 Score=33.97 Aligned_cols=105 Identities=17% Similarity=0.193 Sum_probs=75.2
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNME 782 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 782 (968)
-|-..|++.-|+-=|.+. ..|.|+ ++.|+-+.--|-.+|+++-|.+.++.. .+.|. ..+...-.-+..--|+.+
T Consensus 74 lYDSlGL~~LAR~DftQa---Lai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 74 LYDSLGLRALARNDFSQA---LAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred hhhhhhHHHHHhhhhhhh---hhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchH
Confidence 466778888888877755 477888 778888888888999999999999887 66675 222221111234467899
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
+|.+-.-+.-+-+|+|| ..-.|+|-...+.+
T Consensus 151 LAq~d~~~fYQ~D~~DP---fR~LWLYl~E~k~d 181 (297)
T COG4785 151 LAQDDLLAFYQDDPNDP---FRSLWLYLNEQKLD 181 (297)
T ss_pred hhHHHHHHHHhcCCCCh---HHHHHHHHHHhhCC
Confidence 99999999999999887 33346676555543
No 369
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=50.14 E-value=3e+02 Score=28.15 Aligned_cols=229 Identities=15% Similarity=0.225 Sum_probs=138.2
Q ss_pred cCCHHHHHHHHHhCCC----C---CcccHHHHHHHHHhcCChhhHHHHHHHhhh---cCCc--CCcchHHHHHHHHhhhh
Q 040643 543 CGRIQEAYLVFNKIDA----K---DNISWNGLISGFAQSGYCEGALQVFSQMTQ---VGVQ--ANLYTFGSVVSAAANLA 610 (968)
Q Consensus 543 ~g~~~~A~~~f~~m~~----~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~--p~~~t~~~ll~a~~~~~ 610 (968)
...+++|..-|+...+ + ...+.-.||..+.+.|++++.++.+++|.. ..+. -+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 4467888888876542 2 223455678899999999999999988854 2222 23456777777766666
Q ss_pred hHHHHHHHHHHHHH----h-CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC--------CC-------HHHHHHHHH
Q 040643 611 NIKQGKQVHAMIIK----T-GYDSETEASNSLITLYAKCGSIDDAKREFLEMPE--------KN-------EVSWNAMIT 670 (968)
Q Consensus 611 ~~~~a~~~~~~~~~----~-g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~--------~d-------~~~~~~li~ 670 (968)
+.+.-..+++--++ . +-..=-.+.+-|...|...|.+.+-.+++.++.+ .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 66666555543322 1 1111122345567777777777777777766541 11 235666788
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC-CCCChHHHHHHHHHHc-----ccCcHHHHHHHHHHhhhhcCCCCCcc-----hHHHH
Q 040643 671 GFSQHGYALEAINLFEKMKKHD-VMPNHVTFVGVLSACS-----HVGLVNEGLRYFESMSTEYGLVPKPE-----HYACV 739 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~i~p~~~-----~y~~l 739 (968)
.|....+-.+--.++++.+.-. .-|. ....+++.-|. +.|.+++|..=|-+.-+.|.-.-++. -|-.+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPH-PlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPH-PLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCc-hHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 8888888888888898877622 2233 34456666664 56888887654443335444322222 24455
Q ss_pred HHHHhhcCC----hHHHHHHHHhCCCC--CCHHHHHHHHHHHHhc
Q 040643 740 VDLLGRAGC----LSRAREFTEQMPIE--PDAMVWRTLLSACRVH 778 (968)
Q Consensus 740 v~~l~r~G~----~~eA~~~~~~m~~~--p~~~~~~~ll~~~~~~ 778 (968)
..+|.++|- -.||. |++ |.......|..+|...
T Consensus 279 ANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~N 317 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQNN 317 (440)
T ss_pred HHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhcc
Confidence 666666662 11221 443 5567777888887654
No 370
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=50.04 E-value=4.6e+02 Score=30.31 Aligned_cols=180 Identities=12% Similarity=0.107 Sum_probs=106.5
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHhCCCC---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHH
Q 040643 529 DLSIGNALISLYARCGRIQEAYLVFNKIDAK---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSA 605 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a 605 (968)
+...|+.-++.-.+.|+.+.+.-.|++...+ =..-|--.+.-....|+.+-|-.++..-.+--++-...+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4556777777888889998888888877544 1223444444444447777776666554443222222221111122
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH---HHHhcCC--CCCHHHHHHHHHH-----HHhc
Q 040643 606 AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK---REFLEMP--EKNEVSWNAMITG-----FSQH 675 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~---~~f~~~~--~~d~~~~~~li~~-----~~~~ 675 (968)
+-..|+...|+.+++.+...- +.-+.+-.--+.+.-+.|..+.+. +++.... ..+....+.+..- +...
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 445678999999998887754 333444455567777888888887 4444433 2232223333222 3345
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccC
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVG 711 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 711 (968)
++.+.|..++.+|.+ +.|+ ..-|..++.-+...+
T Consensus 455 ~d~~~a~~~l~~~~~--~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEAND--ILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhh--cCCccHHHHHHHHHHHHhCC
Confidence 788888888888887 5554 445666666544333
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.91 E-value=2.4e+02 Score=29.40 Aligned_cols=40 Identities=8% Similarity=-0.160 Sum_probs=20.1
Q ss_pred hhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHH
Q 040643 512 NQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVF 553 (968)
Q Consensus 512 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f 553 (968)
..|.++|..++.+.-. ...-+-++.++-..-+..+|...|
T Consensus 150 ~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~l 189 (361)
T COG3947 150 RKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLL 189 (361)
T ss_pred hHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHH
Confidence 5677777777664321 122234455554444444444433
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=49.87 E-value=89 Score=30.61 Aligned_cols=42 Identities=12% Similarity=0.018 Sum_probs=18.5
Q ss_pred cCCHHHHHHHHHHHHHC---CCCCChHHHHHHHHHHcccCcHHHH
Q 040643 675 HGYALEAINLFEKMKKH---DVMPNHVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~---g~~Pd~~t~~~ll~a~~~~g~~~~a 716 (968)
..+.++|+.++.+.++. +-.+|+..|.+|.+.+.+.|++++|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44555555555555442 1123333444444444444444433
No 373
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=48.45 E-value=43 Score=33.47 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=43.7
Q ss_pred CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 760 PIEPDA-MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 760 ~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
-+.|.. ..|..=+-.+.+.++++..+.-..++++++|+..-.+..|++.......+++|..+..+.
T Consensus 38 ~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 38 CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 345553 333333333344667777777777888888877777777887777777777777765544
No 374
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=47.81 E-value=34 Score=32.66 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 781 MEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
++.|..-++.++.++|+...++..|+|.|.+.|.
T Consensus 51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 4567777888999999999999999999999876
No 375
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=47.71 E-value=5.6e+02 Score=30.58 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=14.1
Q ss_pred HHHHHHhhcCCcchHHHHHHHH
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.+.+.|...|+-++|...+...
T Consensus 582 ~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 582 MLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred HHHHHHHHcCcHHHHHHHHHHH
Confidence 3445566677777777766654
No 376
>PRK14015 pepN aminopeptidase N; Provisional
Probab=47.22 E-value=3.6e+02 Score=33.67 Aligned_cols=148 Identities=15% Similarity=0.130 Sum_probs=80.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc--HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL--VNEGLRYFESMSTEYGLVPK-PEHYACVVDLL 743 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l 743 (968)
..+.-++..+..+......++.... .|..--.+-|+++.+.+. -+++++-|. +.+.-.|- .+-|-.+.-.-
T Consensus 687 ~~l~~l~~~~~~~~~~~~~~~~~~a---~~mtd~~~al~~l~~~~~~~~~~~l~~f~---~~~~~~~lv~~kwf~~qa~~ 760 (875)
T PRK14015 687 VCLSYLAAADDEEAAELAEAQFDQA---DNMTDRLAALSALVNADLPERDEALADFY---DRWKDDPLVMDKWFALQATS 760 (875)
T ss_pred HHHHHHHhCCChhHHHHHHHHHhhC---CCHHHHHHHHHHHhcCCChHHHHHHHHHH---HHhCCCchhhHHHHHHHhCC
Confidence 3333334434333333344444443 232223444555554433 344544444 44444554 34444444333
Q ss_pred hhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCh------h-HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCc
Q 040643 744 GRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNM------E-IGEYAANHLLELEPEDSATYVLLSNIYAAAGKW 815 (968)
Q Consensus 744 ~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~------~-~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 815 (968)
-+.+-++...++.+.-.+.+. +.-.++|++++...+-. . -=.-+++.+++++|-|+..-..|...+..=.++
T Consensus 761 ~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~ 840 (875)
T PRK14015 761 PAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFAAANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRY 840 (875)
T ss_pred CCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHhhcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcc
Confidence 334445555555444333332 34457999997543321 2 235688999999999999988898888888888
Q ss_pred chHHH
Q 040643 816 DCRDQ 820 (968)
Q Consensus 816 ~~a~~ 820 (968)
++..+
T Consensus 841 ~~~r~ 845 (875)
T PRK14015 841 DPKRQ 845 (875)
T ss_pred CHHHH
Confidence 87765
No 377
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=46.96 E-value=1.9e+02 Score=25.04 Aligned_cols=87 Identities=11% Similarity=0.092 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 611 NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 611 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
..++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||...|-++-. .+.|..+++..-+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 35566666666655442 222222333445667888888855555566888888866644 577888888888887776
Q ss_pred CCCCCChHHHH
Q 040643 691 HDVMPNHVTFV 701 (968)
Q Consensus 691 ~g~~Pd~~t~~ 701 (968)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 65 44334443
No 378
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=46.88 E-value=52 Score=32.44 Aligned_cols=63 Identities=19% Similarity=0.128 Sum_probs=38.6
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
-+.-|.+.+++++|+.+.+.- .-+|. ...-..|..-+...|+.++|..-.+-+-+++|++..-
T Consensus 7 t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~ 71 (273)
T COG4455 7 TISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVG 71 (273)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchH
Confidence 345566677777777665443 34443 3344445556677777777777777777777765543
No 379
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=46.58 E-value=3.5e+02 Score=33.68 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=79.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc--HHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 040643 666 NAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL--VNEGLRYFESMSTEYGLVPK-PEHYACVVDL 742 (968)
Q Consensus 666 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 742 (968)
|..+.-++..+..+......++..+.. |..--.+-|+++.+.+. -+++++-|. ..+.-.|- .+-|-.+.-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~~~~~~~l~~f~---~~~~~~~lv~~kwf~~qa~ 749 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFESDFRERALAAFY---QKWKDDPLVMDKWFALQAT 749 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCChhHHHHHHHHH---HHHCCCchhHHHHHHHHhC
Confidence 444444444454433333344444322 22223444444443332 333444443 44444554 3334444333
Q ss_pred HhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC------h-hHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 743 LGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKN------M-EIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~------~-~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
-.+.+-++...++.+.-.+.+. +.-.++|++++...+- - +-=.-+++.+++++|-|+..-..|...+..=.+
T Consensus 750 ~~~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~ 829 (863)
T TIGR02414 750 SPRPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRK 829 (863)
T ss_pred CCcccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhc
Confidence 3334444455555444333322 3344789998753322 1 223568899999999999998889988888888
Q ss_pred cchHHH
Q 040643 815 WDCRDQ 820 (968)
Q Consensus 815 ~~~a~~ 820 (968)
+++..+
T Consensus 830 ~~~~r~ 835 (863)
T TIGR02414 830 LDPKRQ 835 (863)
T ss_pred CCHHHH
Confidence 887765
No 380
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.49 E-value=57 Score=24.15 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=26.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS 705 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~ 705 (968)
-+.-|+.+.|++++|.+..+.+++ +.|+......|-.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHHHH
Confidence 356678889999999999999998 8898665554443
No 381
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=46.48 E-value=27 Score=35.94 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=36.0
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
..+.|+.++|..+++.. .+.|+ +.+..-+-.-...++++-+|.+..-+++.+.|.|+.+.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 45677777777776654 55555 2222222222334556667777777777777777666544
No 382
>PRK13342 recombination factor protein RarA; Reviewed
Probab=46.03 E-value=2.9e+02 Score=31.05 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=33.8
Q ss_pred ccHHHHHHHHHh---cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 562 ISWNGLISGFAQ---SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 562 ~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
..+..+++++.+ ..+.+.|+.++..|.+.|..|....-..+..++...
T Consensus 228 ~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 228 DEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 345556666665 478999999999999999888766555555554433
No 383
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=45.97 E-value=67 Score=35.59 Aligned_cols=123 Identities=12% Similarity=0.125 Sum_probs=67.1
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC-------------CHHHHHHHHHHH-----
Q 040643 611 NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK-------------NEVSWNAMITGF----- 672 (968)
Q Consensus 611 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~-------------d~~~~~~li~~~----- 672 (968)
.+++-.++++.+.+.| ...+...-||.|.+.+++++|.+-+++-.+. .+..-..++.+.
T Consensus 69 ~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQ 145 (480)
T TIGR01503 69 LLDEHIELLRTLQEEG---GADFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQ 145 (480)
T ss_pred cHHHHHHHHHHHHHcc---CCCccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCee
Confidence 4556666666666654 1224455678888888888888777754321 111222233321
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHcccCcHHHHHHHHH---Hhhhh---cCCCCCcchHHHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPN---HVTFVGVLSACSHVGLVNEGLRYFE---SMSTE---YGLVPKPEHYACVV 740 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~---~m~~~---~~i~p~~~~y~~lv 740 (968)
.+||.+ .|..+|+-+...|+.-. .++|+. -|++.=-+++++..++ ++... .|+..+.+.+++|.
T Consensus 146 vRHGtp-DarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLt 218 (480)
T TIGR01503 146 IRHGTP-DARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLT 218 (480)
T ss_pred ccCCCC-cHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCC
Confidence 244443 36667777777776543 334432 2444445666665554 33222 37777777776653
No 384
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.96 E-value=6.7e+02 Score=31.01 Aligned_cols=28 Identities=29% Similarity=0.455 Sum_probs=23.8
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQV 590 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~ 590 (968)
-|..||.-|...|..++|++++.+....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 4788899999999999999999988763
No 385
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.58 E-value=81 Score=28.60 Aligned_cols=75 Identities=11% Similarity=0.139 Sum_probs=51.2
Q ss_pred cCChhHHHHHHHHHHc-cCCCCc-chHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCC
Q 040643 778 HKNMEIGEYAANHLLE-LEPEDS-ATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLH 855 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~-l~p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h 855 (968)
..++.+|..+.+.+++ -.|+.. .....|+--+++.|+++.+.+.-+..-+. +.+.
T Consensus 48 ~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~-----------------------e~~n 104 (149)
T KOG3364|consen 48 TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET-----------------------EPNN 104 (149)
T ss_pred hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh-----------------------CCCc
Confidence 3467889999999997 455533 44556777889999999999987766542 1233
Q ss_pred cchHHHHHHHHHHHHHHHHcCcc
Q 040643 856 PLADKIYDYLGNLNRRVAEIGYV 878 (968)
Q Consensus 856 ~~~~~i~~~l~~l~~~~~~~g~~ 878 (968)
+|+.+. =+.+..+|.+.|++
T Consensus 105 ~Qa~~L---k~~ied~itkegli 124 (149)
T KOG3364|consen 105 RQALEL---KETIEDKITKEGLI 124 (149)
T ss_pred HHHHHH---HHHHHHHHhhccee
Confidence 454444 34456788888864
No 386
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=45.55 E-value=70 Score=33.70 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=71.3
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-C---CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-P---IEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~---~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.++|--=+.-|.+..++..|.+.+.+- . -.|| ++.|..=..+-.--||+..+..-+.+++.++|.+.-+|+.=+
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A 160 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA 160 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence 445555567788899999999998875 1 2344 666666666666789999999999999999999999999999
Q ss_pred HHHhhcCCcchHHHHHH
Q 040643 807 NIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~ 823 (968)
..+....++++|...-+
T Consensus 161 kc~~eLe~~~~a~nw~e 177 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCE 177 (390)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99888888777665433
No 387
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=45.35 E-value=3.7e+02 Score=27.87 Aligned_cols=37 Identities=16% Similarity=0.074 Sum_probs=24.6
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccH
Q 040643 528 DDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISW 564 (968)
Q Consensus 528 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~ 564 (968)
.|+.....+...|.+.|++.+|+.-|-.-..++...+
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~ 124 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY 124 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence 3567777888999999999999988765544443333
No 388
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=45.16 E-value=37 Score=28.48 Aligned_cols=36 Identities=22% Similarity=0.243 Sum_probs=23.6
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
...++.++.+|+|...-..|+..|...|++++|.+.
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~ 44 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQ 44 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 445666667777777777777777777777777664
No 389
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=45.13 E-value=31 Score=35.54 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=34.7
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
..+.|..++|..+|+... .+.|+ ++...-+........++-+|-.++-+. .+.|.
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 557888999999988653 45666 444444444444455566666665554 55665
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=43.75 E-value=5.1e+02 Score=28.96 Aligned_cols=78 Identities=14% Similarity=0.032 Sum_probs=37.4
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhh--HHHHHHhhcccCchHHHHHHHHHHHHhcCCCchh--HHHHHHHHhhccCCh
Q 040643 190 SQNGYEREAILLFCQMHILGTVPTPYA--ISSALSACTKIELFEIGEQFHGLIFKWGFSSETF--VCNALVTLYSRSGNL 265 (968)
Q Consensus 190 ~~~g~~~~A~~~~~~m~~~g~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~ 265 (968)
++.|+.+- ++.+.+.|..|+... -.+.|..++..|+.+ +...+++.|..++.. ....-+...++.|+.
T Consensus 10 ~~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 34555543 344445576665432 233444445555554 333444555444322 112334445556666
Q ss_pred hHHHHHHhhC
Q 040643 266 TSAEQIFSKM 275 (968)
Q Consensus 266 ~~A~~~f~~m 275 (968)
+.+..+++.-
T Consensus 82 ~~v~~Ll~~~ 91 (413)
T PHA02875 82 KAVEELLDLG 91 (413)
T ss_pred HHHHHHHHcC
Confidence 6666666543
No 391
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=43.63 E-value=4.4e+02 Score=28.18 Aligned_cols=104 Identities=18% Similarity=0.068 Sum_probs=66.0
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCC---CCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGL---VPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNME 782 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i---~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~ 782 (968)
+|.+.+-.+++.+.|+.....-.- ..+++....+.....+.|..++-..+++...-.++...-..++.+..-..|.+
T Consensus 139 a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 139 ACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp HHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HH
T ss_pred hccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHH
Confidence 553444578899999988663111 33455566667777788887666666665555677888889999988888999
Q ss_pred HHHHHHHHHHccC-CCCcchHHHHHHHH
Q 040643 783 IGEYAANHLLELE-PEDSATYVLLSNIY 809 (968)
Q Consensus 783 ~a~~~~~~~~~l~-p~~~~~~~~l~~~y 809 (968)
.-.++.+.++.-+ -.....+..+..++
T Consensus 219 ~~~~~l~~~l~~~~v~~~d~~~~~~~~~ 246 (324)
T PF11838_consen 219 LLKRLLDLLLSNDKVRSQDIRYVLAGLA 246 (324)
T ss_dssp HHHHHHHHHHCTSTS-TTTHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccHHHHHHHHHHh
Confidence 9999999999843 12223455555554
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=42.95 E-value=1.8e+02 Score=25.37 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=25.1
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHh
Q 040643 462 SWTAMIVGFVQHGMFGEALELFEEMEN 488 (968)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 488 (968)
-|..++..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 578899999999999999999999877
No 393
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=42.93 E-value=4.9e+02 Score=28.59 Aligned_cols=58 Identities=21% Similarity=0.187 Sum_probs=38.3
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC-----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPE-----K-NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
...-+.+.|..||+++.|.+.+.+..+ + -+..|-.+|..-.-.|++......-.+...
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 445678899999999999999998652 1 233555555555555666655555555443
No 394
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=42.52 E-value=2.1e+02 Score=26.56 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=31.9
Q ss_pred hHHHHHHHHHHcccCc-HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc
Q 040643 697 HVTFVGVLSACSHVGL-VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA 746 (968)
Q Consensus 697 ~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 746 (968)
..+|..++.+.+.+.. ---+..+|+-|++ .+++++...|.+|+....|.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~-~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKK-NDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHcC
Confidence 3456777777766665 4556667777755 46677777777777665544
No 395
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.41 E-value=1.4e+02 Score=29.04 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=47.4
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKN 780 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~ 780 (968)
.-|.-|...|+++.+...+......++-.. ....+. .-+++..+.+++.. ...|..|+... .+
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~---------~v~~eve~ii~~~r----~~l~~~L~~~~---~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQ---------KVWSEVEKIIEEFR----EKLWEKLLSPP---SS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHH---------HHHHHHHHHHHHHH----HHHHHHHhCCC---CC
Confidence 445667777888887777776655433222 111111 12233344333321 12333333222 56
Q ss_pred hhHHHHHHHHHHccCCCCcchHHHH
Q 040643 781 MEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
.+......+.+++|+|++..++..|
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~l 179 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYWL 179 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 7778888899999998765555444
No 396
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=42.33 E-value=1.7e+02 Score=26.24 Aligned_cols=50 Identities=12% Similarity=0.120 Sum_probs=39.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 751 RAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 751 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
+++.-.-.+.+.|++.+..+-|.|||.-+|+..|.++++-+...-+..-.
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~ 119 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQ 119 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHH
Confidence 33333445578999999999999999999999999999988766554433
No 397
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=41.38 E-value=4.5e+02 Score=27.75 Aligned_cols=165 Identities=15% Similarity=0.217 Sum_probs=93.9
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM 694 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 694 (968)
.-+++.+...++-++.....+-++...+...++.+..++.... ..|. -.++.. +-.+.+.-++++.++ +.
T Consensus 20 fPLlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~------p~a~~e--kr~~Vla~lkeLe~e-v~ 90 (432)
T KOG2758|consen 20 FPLLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDM------PNALVE--KRTEVLAELKELEEE-VA 90 (432)
T ss_pred HHHHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccc------hHHHHH--HHHHHHHHHHHHHHH-HH
Confidence 3445556666677777777788888888899999998888773 1111 011111 112223333333321 11
Q ss_pred CChHHHHHHH---HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHH---HhC--CCCCC-
Q 040643 695 PNHVTFVGVL---SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFT---EQM--PIEPD- 764 (968)
Q Consensus 695 Pd~~t~~~ll---~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~---~~m--~~~p~- 764 (968)
| ...++ ..-.....-.++...++.+.+.|++.|+ +++.--...-...+|++..|-+++ +.. +.+||
T Consensus 91 p----iv~~le~Pd~~~~~~~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~ 166 (432)
T KOG2758|consen 91 P----IVKVLENPDLIAALRSDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNY 166 (432)
T ss_pred H----HHHHHcCHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhh
Confidence 1 11111 1111112233456788888899999998 566556666677899999988753 333 33443
Q ss_pred -HHHHHHHHHHHHhcCChhHHHHHHHHHHcc
Q 040643 765 -AMVWRTLLSACRVHKNMEIGEYAANHLLEL 794 (968)
Q Consensus 765 -~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l 794 (968)
...|+-|.+-- ..-|.+.|.+-.-++-+.
T Consensus 167 lsalwGKlASEI-L~qnWd~A~edL~rLre~ 196 (432)
T KOG2758|consen 167 LSALWGKLASEI-LTQNWDGALEDLTRLREY 196 (432)
T ss_pred HHHHHHHHHHHH-HHhhHHHHHHHHHHHHHH
Confidence 56777765543 334667777666665554
No 398
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=40.61 E-value=5.3e+02 Score=28.29 Aligned_cols=97 Identities=18% Similarity=0.247 Sum_probs=60.4
Q ss_pred ChHHHHHH---HHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH--HHHHHH-hhcCChHHHHHHHHhCCC--------
Q 040643 696 NHVTFVGV---LSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA--CVVDLL-GRAGCLSRAREFTEQMPI-------- 761 (968)
Q Consensus 696 d~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~--~lv~~l-~r~G~~~eA~~~~~~m~~-------- 761 (968)
|..-|.++ +..+.+.|-+..|.++.+-+. .+.|+.+.++ .+||.| .|+++++--.+++++...
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 33344444 346778888888888888763 5667644444 456766 578888877777776422
Q ss_pred -CCCHHHHHHHHHHHHhcCC--------------hhHHHHHHHHHHccCC
Q 040643 762 -EPDAMVWRTLLSACRVHKN--------------MEIGEYAANHLLELEP 796 (968)
Q Consensus 762 -~p~~~~~~~ll~~~~~~g~--------------~~~a~~~~~~~~~l~p 796 (968)
-|+ ..++.-|.-+...++ .+.|..+..+++..-|
T Consensus 176 ~lPn-~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 176 LLPN-FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred hCcc-HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 233 223333433433333 3788888888888877
No 399
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=40.48 E-value=47 Score=26.83 Aligned_cols=46 Identities=13% Similarity=0.093 Sum_probs=20.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-C-hHHHHHHHHHHcccCcHHHHHHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMP-N-HVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~P-d-~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
...+.++|+..|...++.-..| + ..++..+..|++..|.+.+.+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555432222 1 12344444455555555444443
No 400
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=40.42 E-value=4.9e+02 Score=27.81 Aligned_cols=110 Identities=6% Similarity=0.047 Sum_probs=60.9
Q ss_pred hhHHHHHHHHHHHHHhCC----CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGY----DSETEASNSLITLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINL 684 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~----~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l 684 (968)
.-.+.+.+.+......+. ..++.....+.....+.|..+.-..+++... .++..--..++.+.+-..+.+...++
T Consensus 144 ~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~ 223 (324)
T PF11838_consen 144 ECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRL 223 (324)
T ss_dssp HHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHH
Confidence 346666677666665311 3345555566666667777666555555554 44666677788888887787777777
Q ss_pred HHHHHHCC-CCCChHHHHHHHHHHc--ccCcHHHHHHHHH
Q 040643 685 FEKMKKHD-VMPNHVTFVGVLSACS--HVGLVNEGLRYFE 721 (968)
Q Consensus 685 ~~~m~~~g-~~Pd~~t~~~ll~a~~--~~g~~~~a~~~~~ 721 (968)
++.....+ +++..+. .++.++. +.--.+.++++|.
T Consensus 224 l~~~l~~~~v~~~d~~--~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 224 LDLLLSNDKVRSQDIR--YVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHCTSTS-TTTHH--HHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHcCCcccccHHHH--HHHHHHhcCChhhHHHHHHHHH
Confidence 77777754 5554432 2222333 3223366666654
No 401
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=39.75 E-value=45 Score=29.20 Aligned_cols=71 Identities=20% Similarity=0.301 Sum_probs=50.6
Q ss_pred EEEEcCEEEEEecCCC-CCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCC
Q 040643 838 WIEVKNSIHAFFVGDR-LHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDS 916 (968)
Q Consensus 838 ~i~~~~~~~~f~~~d~-~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~ 916 (968)
|++.+|.+-.|...+. .+|...+|...|+++.+++.. ...++.-|++++ ..||-.|++.+.|
T Consensus 23 ~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-----~v~f~kVdid~~----------~~la~~f~V~sIP-- 85 (111)
T cd02965 23 WLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-----RFRAAVVGRADE----------QALAARFGVLRTP-- 85 (111)
T ss_pred HHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-----cEEEEEEECCCC----------HHHHHHcCCCcCC--
Confidence 4456677777777775 899999999999999887532 123444555542 4788999999998
Q ss_pred CCEEEecccc
Q 040643 917 MPILVIKNLR 926 (968)
Q Consensus 917 ~~~~~~kn~r 926 (968)
++.++||-+
T Consensus 86 -Tli~fkdGk 94 (111)
T cd02965 86 -ALLFFRDGR 94 (111)
T ss_pred -EEEEEECCE
Confidence 667777644
No 402
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=39.57 E-value=1.7e+02 Score=25.62 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=25.3
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQ 589 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 589 (968)
.-|..++.-|...|..++|++++.++..
T Consensus 40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 40 GKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3589999999999999999999999877
No 403
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=38.91 E-value=97 Score=28.58 Aligned_cols=70 Identities=14% Similarity=0.118 Sum_probs=45.7
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 750 SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 750 ~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
+.|.++++-|+ ...............|++..|..+++.++..+|+|...-.+.+++|...|.-.+...-|
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~~~R 127 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENANWR 127 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSHHHH
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCHHHH
Confidence 45555555553 11111233344567899999999999999999999999999999998877655444333
No 404
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.29 E-value=7.2e+02 Score=29.19 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHH
Q 040643 677 YALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
+.+.|..+|.+..+.| .|-..--...+.++.. +.++.+.-....
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~ 422 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLY 422 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHH
Confidence 5666666666666655 3332222333333333 444444444333
No 405
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=38.23 E-value=73 Score=25.80 Aligned_cols=48 Identities=8% Similarity=0.018 Sum_probs=34.9
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFT 756 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~ 756 (968)
++...++|+..+++..+...-.|+ -...+|++.+|+..|++++++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888877665443443 456788888888888888887763
No 406
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=38.16 E-value=3.3e+02 Score=27.41 Aligned_cols=135 Identities=13% Similarity=0.161 Sum_probs=0.0
Q ss_pred HHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHH
Q 040643 256 VTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGE 335 (968)
Q Consensus 256 i~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 335 (968)
+..|++.-++.-|...++++.+| ..+--++++ |.+-.+.+---++.+-....++.-+..-...++ +...||..+|.
T Consensus 137 MEiyS~ttRFalaCN~s~KIiEP-IQSRCAiLR-ysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaii--fta~GDMRQal 212 (333)
T KOG0991|consen 137 MEIYSNTTRFALACNQSEKIIEP-IQSRCAILR-YSKLSDQQILKRLLEVAKAEKVNYTDDGLEAII--FTAQGDMRQAL 212 (333)
T ss_pred HHHHcccchhhhhhcchhhhhhh-HHhhhHhhh-hcccCHHHHHHHHHHHHHHhCCCCCcchHHHhh--hhccchHHHHH
Q ss_pred HHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 040643 336 QLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTP 414 (968)
Q Consensus 336 ~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 414 (968)
..++.-+..- .+-.+..+|.-..+|....-..|+..+.. +++++|.+++.++-+.|+.|
T Consensus 213 NnLQst~~g~-------------------g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp 271 (333)
T KOG0991|consen 213 NNLQSTVNGF-------------------GLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSP 271 (333)
T ss_pred HHHHHHhccc-------------------cccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCH
No 407
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=38.15 E-value=22 Score=20.03 Aligned_cols=12 Identities=25% Similarity=0.490 Sum_probs=8.2
Q ss_pred ChhhHHHHHHHH
Q 040643 929 NDCHNWIKFVSK 940 (968)
Q Consensus 929 ~dch~~~k~~s~ 940 (968)
..-|.++|+||.
T Consensus 10 qglhe~ikli~n 21 (23)
T PF08225_consen 10 QGLHEVIKLINN 21 (23)
T ss_pred HHHHHHHHHHhc
Confidence 345888888773
No 408
>PRK10941 hypothetical protein; Provisional
Probab=38.14 E-value=1.5e+02 Score=30.94 Aligned_cols=66 Identities=14% Similarity=0.095 Sum_probs=43.6
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
+-.+|.+.++++.|+...+.+ -+.|+ +.-|+--.-.+..-|....|..-.+..++..|+++.+-.+
T Consensus 187 LK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 187 LKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 344566677777777777666 45555 5556655555677777777777777777777777755444
No 409
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.86 E-value=62 Score=21.67 Aligned_cols=32 Identities=9% Similarity=-0.094 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCChhHHHHH--HHHHHccCCCC
Q 040643 767 VWRTLLSACRVHKNMEIGEYA--ANHLLELEPED 798 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~--~~~~~~l~p~~ 798 (968)
-|-++...+...|+.+.|+.. .+-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 355666667778888888887 44777776654
No 410
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.27 E-value=36 Score=30.67 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.8
Q ss_pred cCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhh
Q 040643 191 QNGYEREAILLFCQMHILGTVPTPYAISSALSAC 224 (968)
Q Consensus 191 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 224 (968)
..|.-.+|-.+|+.|+..|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 44666788999999999999987 566776654
No 411
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=37.14 E-value=2.2e+02 Score=24.74 Aligned_cols=78 Identities=10% Similarity=0.024 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 040643 230 FEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD 309 (968)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 309 (968)
.++|..+.+.+...+- ....+--..+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++...
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 4455555555555442 222222333456778899999965555666789999987765 4778888888888877665
Q ss_pred c
Q 040643 310 C 310 (968)
Q Consensus 310 g 310 (968)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 412
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=37.09 E-value=1.1e+02 Score=34.83 Aligned_cols=72 Identities=21% Similarity=0.125 Sum_probs=46.6
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PI-EPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
+..++.+.|...+|-.++.+. .+ ...+.+.-.+-+++....|++.|.++++.+++++|+++..-..|-.|-+
T Consensus 648 la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 648 LANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 344444555555555544432 11 2224455566677777788999999999999999999887776655544
No 413
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=36.63 E-value=2.5e+02 Score=27.08 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=27.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.....|-..|+++.|+++.+++++ +|++...-..|.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 345669999999999999999999 887665544443
No 414
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.40 E-value=6.1e+02 Score=27.76 Aligned_cols=199 Identities=18% Similarity=0.188 Sum_probs=119.0
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHH--HHHHHHCCCCCChHHHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINL--FEKMKKHDVMPNHVTFVGVLSA 706 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l--~~~m~~~g~~Pd~~t~~~ll~a 706 (968)
.+..+...+++++...++|+.--+. +....-++|+...|+.- .+-|.-..-.||..|-..++..
T Consensus 50 s~~kv~~~i~~lc~~~~~w~~Lne~--------------i~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~li~t 115 (439)
T KOG1498|consen 50 SNTKVLEEIMKLCFSAKDWDLLNEQ--------------IRLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKLIET 115 (439)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHH--------------HHHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHHHHH
Confidence 3445555566666666665543222 12223456676666652 2223332345666665555554
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCC------C--HHHHHHHHHHHHhc
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEP------D--AMVWRTLLSACRVH 778 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p------~--~~~~~~ll~~~~~~ 778 (968)
... +.+|.-|.+ . -.+..-..+++.+-..|++++|.+++.+.|.+- . .....--+..|...
T Consensus 116 Lr~---VtegkIyvE-v-------ERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~ 184 (439)
T KOG1498|consen 116 LRT---VTEGKIYVE-V-------ERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLR 184 (439)
T ss_pred HHH---hhcCceEEe-e-------hHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 321 111111100 0 001112346678888999999999988886542 1 11112234568889
Q ss_pred CChhHHHHHHHHHHccCCCC-------cchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecC
Q 040643 779 KNMEIGEYAANHLLELEPED-------SATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVG 851 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~ 851 (968)
+|+-.|....+++...--++ -.+|.++..++...+.+-++.+..+..-+-|..|...--|+++--.+-.|..-
T Consensus 185 ~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 185 LDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred hhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 99999999988876642222 24788899999999999999999888888777776555688877666667654
Q ss_pred C
Q 040643 852 D 852 (968)
Q Consensus 852 d 852 (968)
-
T Consensus 265 A 265 (439)
T KOG1498|consen 265 A 265 (439)
T ss_pred c
Confidence 4
No 415
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=36.17 E-value=5.3e+02 Score=28.40 Aligned_cols=30 Identities=13% Similarity=-0.129 Sum_probs=21.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHH
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNHVT 699 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t 699 (968)
..+...+++..|.++|+++......|+..+
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~ 167 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHT 167 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhh
Confidence 345567889999999999998765555443
No 416
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=35.70 E-value=63 Score=22.84 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=21.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcC
Q 040643 466 MIVGFVQHGMFGEALELFEEMENQG 490 (968)
Q Consensus 466 li~~~~~~g~~~~A~~l~~~m~~~g 490 (968)
+..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5678889999999999999988654
No 417
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=35.42 E-value=1.4e+02 Score=29.92 Aligned_cols=63 Identities=14% Similarity=0.031 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHH-------HHccCCC------CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANH-------LLELEPE------DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~-------~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.++.-+..-|+..|+.+......++ +++.+.. +.....+++.++.+.|+.++|.+....+-.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~ 193 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIG 193 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc
Confidence 55566666678888885544444444 4444321 245677899999999999999997665543
No 418
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.95 E-value=9.3e+02 Score=29.48 Aligned_cols=50 Identities=26% Similarity=0.288 Sum_probs=33.6
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQM 587 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 587 (968)
..+........|+.+....+-.-|. -|..++.-+.+.+.+++|++++..-
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445556666777777665544443 2566778888999999998887654
No 419
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=34.91 E-value=37 Score=30.58 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=23.2
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHVTFVGVLSAC 707 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~ 707 (968)
..|.-.+|-.+|++|++.|-.||. |..|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 335566788999999999999985 45555544
No 420
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=33.98 E-value=8.5e+02 Score=28.72 Aligned_cols=70 Identities=14% Similarity=0.109 Sum_probs=27.4
Q ss_pred HHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhh
Q 040643 451 ILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSY 522 (968)
Q Consensus 451 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 522 (968)
++.+.+-++...-.-++..|.+.|..+.|.++.+.+-..-. ...-|...+.-+.+.++......+-..+.
T Consensus 396 lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 396 LLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33444433333445566667777777777777776644322 12345566666666666665555544444
No 421
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=33.70 E-value=11 Score=27.71 Aligned_cols=10 Identities=30% Similarity=0.906 Sum_probs=7.8
Q ss_pred cccCChhhHH
Q 040643 925 LRVCNDCHNW 934 (968)
Q Consensus 925 ~r~c~dch~~ 934 (968)
.-||+|||.-
T Consensus 20 iYiCgdC~~e 29 (62)
T KOG3507|consen 20 IYICGDCGQE 29 (62)
T ss_pred EEEecccccc
Confidence 4689999953
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.62 E-value=5.7e+02 Score=26.59 Aligned_cols=153 Identities=16% Similarity=0.100 Sum_probs=79.4
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcchH-------HHHHHHHhhhhhHHHHHHHHH----HHHHhCCCCChhHHhHHhh
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYTF-------GSVVSAAANLANIKQGKQVHA----MIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~ll~a~~~~~~~~~a~~~~~----~~~~~g~~~~~~~~~~li~ 639 (968)
.++.++.++|+..+.+....|+..|..|. .-+...+...|+...-.+... .|....-+-...+..+|++
T Consensus 13 ~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~KiirtLie 92 (421)
T COG5159 13 AVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRTLIE 92 (421)
T ss_pred hhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHHHHH
Confidence 34556667777777777666666555433 334444444444333222221 1222111223445566666
Q ss_pred HHHh-cCCHHHHHHHHhcCCC-----CCH----HHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCChHHHHHHHH
Q 040643 640 LYAK-CGSIDDAKREFLEMPE-----KNE----VSWNAMITGFSQHGYALEAINLF----EKMKKHDVMPNHVTFVGVLS 705 (968)
Q Consensus 640 ~y~k-~g~~~~A~~~f~~~~~-----~d~----~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~Pd~~t~~~ll~ 705 (968)
++.. ..++++-.++.....+ +-. ..=.-+|..+.+.|.+.+|+.+. .++.+..-+|+-+|...+=+
T Consensus 93 kf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllES 172 (421)
T COG5159 93 KFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLES 172 (421)
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhH
Confidence 6643 3445555555544331 111 12245788999999999999854 44555566777666544433
Q ss_pred -HHcccCcHHHHHHHHHHh
Q 040643 706 -ACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 706 -a~~~~g~~~~a~~~~~~m 723 (968)
+|-.-..+.++..-+...
T Consensus 173 Kvyh~irnv~KskaSLTaA 191 (421)
T COG5159 173 KVYHEIRNVSKSKASLTAA 191 (421)
T ss_pred HHHHHHHhhhhhhhHHHHH
Confidence 444444455544444433
No 423
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.21 E-value=5.7e+02 Score=28.80 Aligned_cols=103 Identities=18% Similarity=0.243 Sum_probs=65.1
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCc------cc-EEEEc--CEE
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPG------QS-WIEVK--NSI 845 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g------~s-~i~~~--~~~ 845 (968)
+....++..+++-.+.++-..-+.+.+..+-++.|+..|++..|.++.- ..++.++|| || -|-.+ |-|
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~---~sni~~~~g~~~T~q~~~cif~NNlGcI 292 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLL---VSNIHKEAGGTITPQLSSCIFNNNLGCI 292 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHH---hcccccccCccccchhhhheeecCcceE
Confidence 3455677788888888888888888888999999999999999886533 345666666 33 34333 445
Q ss_pred EEEecCCCCCcchHHH--HHHHHHHHHHHHHcCcccCCCccc
Q 040643 846 HAFFVGDRLHPLADKI--YDYLGNLNRRVAEIGYVQGRYSLW 885 (968)
Q Consensus 846 ~~f~~~d~~h~~~~~i--~~~l~~l~~~~~~~g~~~~~~~~~ 885 (968)
| |..| |-+.... ...|...-.+++. |+.|.+.+.+
T Consensus 293 h-~~~~---~y~~~~~~F~kAL~N~c~qL~~-g~~~~~~~tl 329 (696)
T KOG2471|consen 293 H-YQLG---CYQASSVLFLKALRNSCSQLRN-GLKPAKTFTL 329 (696)
T ss_pred e-eehh---hHHHHHHHHHHHHHHHHHHHhc-cCCCCcceeh
Confidence 6 4333 2222222 1234334445543 7888766543
No 424
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=32.42 E-value=5.3e+02 Score=25.91 Aligned_cols=91 Identities=20% Similarity=0.241 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHH--HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPN---HVTF--VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV 739 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~--~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l 739 (968)
.|.||--|..+..+.+|.+.|.. +.|+.|. ..++ ..-+......|++++|.+..++...+ -+.-+.+.+--|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Confidence 44555555555445555555543 3345542 1122 22344456667777777666655321 122222122211
Q ss_pred HH----HHhhcCChHHHHHHHHh
Q 040643 740 VD----LLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 740 v~----~l~r~G~~~eA~~~~~~ 758 (968)
-. =+.|+|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Confidence 11 24678888899888776
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=31.73 E-value=69 Score=19.91 Aligned_cols=28 Identities=14% Similarity=0.173 Sum_probs=18.3
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
|+.+.+..+.+++++..|.++..+....
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 4566677777777777776666665543
No 426
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.72 E-value=5.1e+02 Score=25.44 Aligned_cols=90 Identities=10% Similarity=0.007 Sum_probs=53.2
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH-----HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHH--HHHHh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV-----VDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLL--SACRV 777 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l-----v~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll--~~~~~ 777 (968)
.+....|++++|..-++.... .|.-+.+..+ ..++...|.+|+|+..++... .++-.....-+ ..+..
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-~~~w~~~~~elrGDill~ 171 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK-EESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-cccHHHHHHHHhhhHHHH
Confidence 356667777777777664432 2333344433 345666788888888777642 23211111122 23667
Q ss_pred cCChhHHHHHHHHHHccCCCCc
Q 040643 778 HKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
.|+.+.|....++.++.+++++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 172 KGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred cCchHHHHHHHHHHHHccCChH
Confidence 7888888888888888875443
No 427
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=31.51 E-value=3e+02 Score=23.08 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CcchHHHHHHHHhhcCCcc-hHHHHHHHHH
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE--DSATYVLLSNIYAAAGKWD-CRDQIRQIMK 826 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~-~a~~~~~~m~ 826 (968)
....-.|...+...|+.+.|....-.+++-+|+ +...-..|..++...|.-+ -+.+.|++|-
T Consensus 22 ~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 22 LDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 455566777788888888888888888888765 4777788888888888754 5566676653
No 428
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=31.09 E-value=13 Score=29.42 Aligned_cols=13 Identities=54% Similarity=0.925 Sum_probs=10.7
Q ss_pred cccccCChhhHHH
Q 040643 923 KNLRVCNDCHNWI 935 (968)
Q Consensus 923 kn~r~c~dch~~~ 935 (968)
|--|||.|||+..
T Consensus 18 kldrVC~DCyNl~ 30 (73)
T PF01147_consen 18 KLDRVCDDCYNLF 30 (73)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5569999999875
No 429
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=30.46 E-value=1e+02 Score=21.82 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=16.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC
Q 040643 668 MITGFSQHGYALEAINLFEKMKKHD 692 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~g 692 (968)
+..+|...|+.+.|.+++++.+..|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 4556666677777777777666543
No 430
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=30.35 E-value=2.2e+02 Score=25.55 Aligned_cols=60 Identities=18% Similarity=0.299 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 680 EAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 680 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
+..+-+.....-++.|++...-.-|.||.+.+++.-|.++|+..+.+ ..+..+.|..+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHHH
Confidence 44555566666779999999999999999999999999999988654 3344445666653
No 431
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=30.12 E-value=28 Score=22.51 Aligned_cols=10 Identities=50% Similarity=0.856 Sum_probs=8.3
Q ss_pred HHHHHHHhhc
Q 040643 903 KLAIAFGLLS 912 (968)
Q Consensus 903 ~la~~~~~~~ 912 (968)
-||.|||+|+
T Consensus 11 lLAcAFgiin 20 (37)
T COG4890 11 LLACAFGIIN 20 (37)
T ss_pred HHHHHHHHHH
Confidence 4799999986
No 432
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=29.60 E-value=27 Score=37.64 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=20.4
Q ss_pred hcccchhccHHHHHHHHhhc-CCCCCCEEE
Q 040643 893 KDPCVYIHSEKLAIAFGLLS-LSDSMPILV 921 (968)
Q Consensus 893 ~~~~~~~hse~la~~~~~~~-~~~~~~~~~ 921 (968)
++..-..+.=|||+||++|. .|||...|.
T Consensus 12 ~~~~wyl~tsKlAlAlAIIrsKPpg~s~Re 41 (375)
T PF13971_consen 12 QQLSWYLKTSKLALALAIIRSKPPGKSSRE 41 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence 33344456779999999995 578866553
No 433
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=29.45 E-value=20 Score=27.62 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=15.7
Q ss_pred ceEEEecCCcccccCCCcCC
Q 040643 944 RTIVVRDANRFHHFEGGVCS 963 (968)
Q Consensus 944 r~i~~rd~~~~h~f~~g~cs 963 (968)
.-|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45678899999999999854
No 434
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=29.18 E-value=89 Score=23.40 Aligned_cols=35 Identities=29% Similarity=0.319 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCC
Q 040643 860 KIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLS 914 (968)
Q Consensus 860 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~ 914 (968)
.+...+++|..++++.|. .-|+|+|+.-.-.+.+|
T Consensus 4 ~al~~lerlq~KL~~rGd--------------------~s~~e~L~~l~~~LqSP 38 (58)
T PF09045_consen 4 RALQALERLQAKLKERGD--------------------TSHSEKLSLLKDTLQSP 38 (58)
T ss_dssp HHHHHHHHHHHHHHHCT----------------------TTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHccC--------------------cccHHHHHHHHHHHhCh
Confidence 355678999999999984 24899999887777655
No 435
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.97 E-value=1.5e+02 Score=21.31 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040643 189 FSQNGYEREAILLFCQMHILGTVPTPYAISSALS 222 (968)
Q Consensus 189 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 222 (968)
..+.|-..++..++++|.+.|+..++..+..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 3456666677777777877777777766666654
No 436
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=28.96 E-value=4.4e+02 Score=29.45 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=94.1
Q ss_pred cCcHHH-HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChhHHHH
Q 040643 710 VGLVNE-GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM--PIEPDAMVWRTLLSACRVHKNMEIGEY 786 (968)
Q Consensus 710 ~g~~~~-a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~~~~ll~~~~~~g~~~~a~~ 786 (968)
.|++-. ..++|..+ +.+.-.| .|.-.........|.++.|+..+... .+.....+...++......|..+.|..
T Consensus 302 ~gd~~aas~~~~~~l-r~~~~~p--~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 302 DGDIIAASQQLFAAL-RNQQQDP--VLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred ccCHHHHHHHHHHHH-HhCCCCc--hhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 455444 45556555 3333334 44444456677899999999999887 345567778889998888999999999
Q ss_pred HHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCC
Q 040643 787 AANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGD 852 (968)
Q Consensus 787 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d 852 (968)
.++.++.-+-+++.....-+----..|-+|++.-.+|..-.-. .+...-|+..-.....|-.|+
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~--~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN--PETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC--ChhcccceeeeccceeccCcc
Confidence 9999999888777665444444445577888888777765433 333444776656666666665
No 437
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=28.94 E-value=80 Score=28.55 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=33.2
Q ss_pred HHHHHHHhhcCCCCC----CEEEecccccCChhhHHHHHHHHhhcceEEEecC
Q 040643 903 KLAIAFGLLSLSDSM----PILVIKNLRVCNDCHNWIKFVSKISNRTIVVRDA 951 (968)
Q Consensus 903 ~la~~~~~~~~~~~~----~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~ 951 (968)
+...|++|++|-++. .+-|.|+ --|+-||.|+|.+- .-|=+|-+-+.
T Consensus 8 ~~l~a~~l~~~~~~~a~~~~~~vyks-PnCGCC~~w~~~mk-~~Gf~Vk~~~~ 58 (149)
T COG3019 8 RSLAALGLGSTGPAQAQATEMVVYKS-PNCGCCDEWAQHMK-ANGFEVKVVET 58 (149)
T ss_pred HHHHHHHhhcccchhcceeeEEEEeC-CCCccHHHHHHHHH-hCCcEEEEeec
Confidence 456778888887764 4556665 46999999999985 56666655443
No 438
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.99 E-value=1.3e+02 Score=29.52 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 761 IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 761 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
..|++.++..++.++...|+.++|++..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 456666666666666666666666666666666666
No 439
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=27.99 E-value=1.4e+02 Score=25.33 Aligned_cols=40 Identities=10% Similarity=0.184 Sum_probs=31.3
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCch
Q 040643 852 DRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQE 891 (968)
Q Consensus 852 d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~ 891 (968)
-+.||....+-....++..-..+.|..|..+.-+-...++
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~~~~~ 96 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAVPKKE 96 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCCCcC
Confidence 5789999888888889988999999999877655444333
No 440
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=27.97 E-value=1.4e+02 Score=29.33 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=17.3
Q ss_pred CCCChHHHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 693 VMPNHVTFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 693 ~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
..|+..++..++.++...|+.++|.+...++.
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555555555555555555555555555543
No 441
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=27.95 E-value=1.1e+02 Score=33.26 Aligned_cols=43 Identities=5% Similarity=0.121 Sum_probs=21.3
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
..++.++|..-+.+-+-++|...-++.--+-++....||.+|.
T Consensus 240 ~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAa 282 (569)
T PF15015_consen 240 RMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAA 282 (569)
T ss_pred hcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555544444444444444444443
No 442
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.94 E-value=8.9e+02 Score=29.63 Aligned_cols=154 Identities=15% Similarity=0.181 Sum_probs=96.6
Q ss_pred HHHHHHHHHHhCCCCChhH----HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 615 GKQVHAMIIKTGYDSETEA----SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 615 a~~~~~~~~~~g~~~~~~~----~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
|..+..++.+.|++-=.-. -..-.+....||+++.|.+.-.++.+ ..+|..|+..-...|+.+-|.-.|++...
T Consensus 623 GqaiIaYLqKkgypeiAL~FVkD~~tRF~LaLe~gnle~ale~akkldd--~d~w~rLge~Al~qgn~~IaEm~yQ~~kn 700 (1202)
T KOG0292|consen 623 GQAIIAYLQKKGYPEIALHFVKDERTRFELALECGNLEVALEAAKKLDD--KDVWERLGEEALRQGNHQIAEMCYQRTKN 700 (1202)
T ss_pred cHHHHHHHHhcCCcceeeeeecCcchheeeehhcCCHHHHHHHHHhcCc--HHHHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 3455566666665321000 01223455679999999988777664 45799999999999999999999988664
Q ss_pred CCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHH
Q 040643 691 HDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWR 769 (968)
Q Consensus 691 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~ 769 (968)
|.-|-..|.-.|+.++-.++-+... +.-+ ..+|-.+. -.|+++|=.++++..+.-|=+.
T Consensus 701 ---------fekLsfLYliTgn~eKL~Km~~iae----~r~D~~~~~qnal----Yl~dv~ervkIl~n~g~~~lay--- 760 (1202)
T KOG0292|consen 701 ---------FEKLSFLYLITGNLEKLSKMMKIAE----IRNDATGQFQNAL----YLGDVKERVKILENGGQLPLAY--- 760 (1202)
T ss_pred ---------hhheeEEEEEeCCHHHHHHHHHHHH----hhhhhHHHHHHHH----HhccHHHHHHHHHhcCcccHHH---
Confidence 3333344666788887666554432 2222 12222111 2577788777777765444322
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHc
Q 040643 770 TLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 770 ~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
+ ....||.-+.|++..+.+-.
T Consensus 761 --l-ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 761 --L-TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred --H-HHhhcCcHHHHHHHHHhhcc
Confidence 1 13568888888888887766
No 443
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=27.73 E-value=7.3e+02 Score=26.04 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=26.1
Q ss_pred CCChhhHhHHHHHHHhcCChhHHHHHHhhCC-----CCCcchHHHHHHHHHhcCCHH
Q 040643 347 SKDIIVEGSMLDLYVKCSDVETAYKFFLTTE-----TENVVLWNVMLVAYGQLNDLS 398 (968)
Q Consensus 347 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~ 398 (968)
.++..+....+..+++.+++..-.++++... ..|...|..+|......|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 3344444444555555555555554444322 235555666666666666654
No 444
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=27.58 E-value=17 Score=30.94 Aligned_cols=31 Identities=19% Similarity=0.494 Sum_probs=19.8
Q ss_pred cccccCChh-hHHHHHHHHhhcceEEEecCCc
Q 040643 923 KNLRVCNDC-HNWIKFVSKISNRTIVVRDANR 953 (968)
Q Consensus 923 kn~r~c~dc-h~~~k~~s~~~~r~i~~rd~~~ 953 (968)
-++-||.+| |.|.+--.....-..++||+|-
T Consensus 17 g~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 17 GTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred CCeeECccccccccccccccccCCceEEcCCC
Confidence 468899999 7776653222222257899874
No 445
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=27.53 E-value=91 Score=23.96 Aligned_cols=29 Identities=17% Similarity=0.336 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 697 HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 697 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
..--..++.++...|.+++|.+|.+.+..
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344555566666666666666655543
No 446
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.32 E-value=1.9e+03 Score=30.63 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=56.1
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC----------CCCCCHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM----------PIEPDAMVW 768 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m----------~~~p~~~~~ 768 (968)
+|.....-+..+|.++.|..+.-...+. + -++.+.-....+...|+-..|+.++++. |.+|.+..-
T Consensus 1672 ~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~ 1747 (2382)
T KOG0890|consen 1672 CWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSV 1747 (2382)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhh
Confidence 5666666666677777776665444221 2 2334455566666777777776666543 112212222
Q ss_pred HHHHHH--------H-HhcCCh--hHHHHHHHHHHccCCCCcchHHHHH
Q 040643 769 RTLLSA--------C-RVHKNM--EIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 769 ~~ll~~--------~-~~~g~~--~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
+.++.. + ...||. +.-......+.++.|+....|+.|+
T Consensus 1748 n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1748 NLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred hhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 222211 1 223443 2334667778888887777777777
No 447
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=26.79 E-value=1.4e+02 Score=24.70 Aligned_cols=63 Identities=11% Similarity=0.155 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhCCCCCcccchhhHHhhh---hCCCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHH
Q 040643 29 AKKIHGKILKLGFDGEQVLCDKFFNIYL---TSGDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVL 96 (968)
Q Consensus 29 a~~~~~~~~~~~~~~~~~~~~~li~~~~---~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~ 96 (968)
..++++.++..|+ ++....=..-+ ..|+.+.|+++++.++ +....|..+++++-..|+..-|.
T Consensus 21 ~~~v~d~ll~~~i----lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL----LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC----CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4566677776663 33222222222 5688899999999998 88888889999888888765543
No 448
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=26.41 E-value=96 Score=29.71 Aligned_cols=58 Identities=10% Similarity=0.075 Sum_probs=31.6
Q ss_pred cCCCCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCc
Q 040643 3 ERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDL 61 (968)
Q Consensus 3 ~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 61 (968)
.+|++++.+-. .+|+.+........|.++++.+.+.+...+..+..+-|..+...|-+
T Consensus 19 ~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 19 QRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 44555555443 34444444445556666666666666555555555555555555544
No 449
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.20 E-value=89 Score=29.01 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=38.0
Q ss_pred ccCCCCCChHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCC
Q 040643 2 EERGIQANSQTFVWLLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGD 60 (968)
Q Consensus 2 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 60 (968)
+++|.+++.+-- .+|+.+...+....|.+++..+.+.++..+..+-.+-+..+...|=
T Consensus 13 k~~glr~T~qR~-~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Gl 70 (145)
T COG0735 13 KEAGLRLTPQRL-AVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGL 70 (145)
T ss_pred HHcCCCcCHHHH-HHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCC
Confidence 456777776653 4566666666667778888888877766666655556666666553
No 450
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=26.18 E-value=3e+02 Score=29.77 Aligned_cols=83 Identities=22% Similarity=0.147 Sum_probs=55.4
Q ss_pred hHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCc--chH
Q 040643 782 EIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHP--LAD 859 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~--~~~ 859 (968)
|.-..++-++---+|+|+.....+ +|.++.+.++++|- +---..++|+...- .-.
T Consensus 28 e~vl~AA~~l~laDPeDSD~N~if-----------~avkiydeL~~~Ge------------dveVA~VsG~~~~~v~ad~ 84 (344)
T PF04123_consen 28 EAVLDAAVKLALADPEDSDVNAIF-----------GAVKIYDELKAEGE------------DVEVAVVSGSPDVGVEADR 84 (344)
T ss_pred HHHHHHHHHHhcCCcccccHHHHH-----------HHHHHHHHHHhcCC------------CeEEEEEECCCCCchhhHH
Confidence 344567777778899999988777 46888999998873 11224678886553 234
Q ss_pred HHHHHHHHHHHHHHHcCcccCCCcccccCCchh
Q 040643 860 KIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQ 892 (968)
Q Consensus 860 ~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~ 892 (968)
+|-++|+++.+ .|.||.-.+.-|-.|+|
T Consensus 85 ~I~~qld~vl~-----~~~~~~~i~VsDGaeDE 112 (344)
T PF04123_consen 85 KIAEQLDEVLS-----KFDPDSAIVVSDGAEDE 112 (344)
T ss_pred HHHHHHHHHHH-----hCCCCEEEEEecChhhh
Confidence 56777776654 35677666666655554
No 451
>PHA03100 ankyrin repeat protein; Provisional
Probab=25.55 E-value=9.2e+02 Score=27.46 Aligned_cols=208 Identities=11% Similarity=0.034 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCChhhHHH--HHHh-----hcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhh-ccCChhHHHH
Q 040643 199 ILLFCQMHILGTVPTPYAISS--ALSA-----CTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYS-RSGNLTSAEQ 270 (968)
Q Consensus 199 ~~~~~~m~~~g~~p~~~t~~~--ll~~-----~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~-~~g~~~~A~~ 270 (968)
.++++.+...|..|+...... .+.. +...+..+.++.+.+.-... -..|....+.|..+.. +.|+.+-...
T Consensus 48 ~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~ 126 (480)
T PHA03100 48 IDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEY 126 (480)
T ss_pred HHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHH
Q ss_pred HHhhCCCCCcccHH--HHHHHHHcCCChhHHHHHHHHhhccccCCCcccH--HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 040643 271 IFSKMQQRDGVTYN--SLISGLAQCGYSDKALELFEKMQLDCLKPDCVTV--ASLVSACASVGAFRTGEQLHSYAIKVGI 346 (968)
Q Consensus 271 ~f~~m~~~~~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 346 (968)
+++.-...+..... +.+...+..|. .-.++++.+.+.|..++...- .+.+..++..| -.++.+.+++.|.
T Consensus 127 Ll~~g~~~~~~~~~g~t~L~~A~~~~~--~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~----~~~iv~~Ll~~ga 200 (480)
T PHA03100 127 LLDNGANVNIKNSDGENLLHLYLESNK--IDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKG----NIDVIKFLLDNGA 200 (480)
T ss_pred HHHcCCCCCccCCCCCcHHHHHHHcCC--ChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhC----CHHHHHHHHHcCC
Q ss_pred CCChhhH--------hHHHHHHHhcCC--hhHHHHHHhh---CCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 040643 347 SKDIIVE--------GSMLDLYVKCSD--VETAYKFFLT---TETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLT 413 (968)
Q Consensus 347 ~~~~~~~--------~~Li~~y~~~g~--~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 413 (968)
.++.... ...+...+..|+ .+-...+++. ...+|..-++.+..+..... .++++.+.+.|..
T Consensus 201 ~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~-----~~iv~~Ll~~gad 275 (480)
T PHA03100 201 DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNN-----PEFVKYLLDLGAN 275 (480)
T ss_pred CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCC
Q ss_pred CCccc
Q 040643 414 PNQYT 418 (968)
Q Consensus 414 p~~~t 418 (968)
|+...
T Consensus 276 ~n~~d 280 (480)
T PHA03100 276 PNLVN 280 (480)
T ss_pred CCccC
No 452
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=25.52 E-value=38 Score=34.37 Aligned_cols=18 Identities=22% Similarity=0.791 Sum_probs=14.0
Q ss_pred ccCChhhHHHHHHHHhhc
Q 040643 926 RVCNDCHNWIKFVSKISN 943 (968)
Q Consensus 926 r~c~dch~~~k~~s~~~~ 943 (968)
-+|+|||+.+|.+-.-.+
T Consensus 253 EtC~~C~sYlKilyqekd 270 (308)
T COG3058 253 ETCGDCNSYLKILYQEKD 270 (308)
T ss_pred hcCCcHHHHHHHHHHhcC
Confidence 469999999998865433
No 453
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=25.52 E-value=1.2e+03 Score=27.77 Aligned_cols=30 Identities=10% Similarity=0.309 Sum_probs=19.9
Q ss_pred CHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHH
Q 040643 661 NEVSWNAMIT-----GFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 661 d~~~~~~li~-----~~~~~g~~~~A~~l~~~m~~ 690 (968)
....|..+.. .|...|+.++|.....+...
T Consensus 571 ~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 571 SDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 4456744433 36667888888888777654
No 454
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=25.24 E-value=5.7e+02 Score=25.18 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT-FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
....+.++.-+...|+++.|-+.|--++... ..|..+ |..=+.-+.+.+.-....++|+.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~~--------------- 104 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLIS--------------- 104 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHHH---------------
Confidence 4567889999999999999999999998742 334333 22222233444433333355555443
Q ss_pred HHHhhcCChHHHHHHHHhCCC--------CCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHcc--CC---CCcchHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPI--------EPD---AMVWRTLLSACRVHKNMEIGEYAANHLLEL--EP---EDSATYVL 804 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~--------~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l--~p---~~~~~~~~ 804 (968)
.|.......+........|. .|. ...|..|.........++.++++++++-|+ .| +++..|.+
T Consensus 105 -~y~~~~~~~~~~~~~~~~pvfrsGs~t~tp~y~~~~LW~~l~~~~~~~~~~~~~~~l~~ri~Elvl~PPy~d~~el~~i 183 (199)
T PF04090_consen 105 -FYPSRKAFNQYYNRRIIAPVFRSGSRTHTPLYAITWLWILLIQEEDRESELDSYQQLIERIDELVLSPPYMDDGELWFI 183 (199)
T ss_pred -HHHHhhhccchhhhhcccccccCCCcccchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Confidence 33322222222111111111 132 234444444443333456677888887776 44 46666666
Q ss_pred HHHHH
Q 040643 805 LSNIY 809 (968)
Q Consensus 805 l~~~y 809 (968)
.+-++
T Consensus 184 ~~m~~ 188 (199)
T PF04090_consen 184 RGMCH 188 (199)
T ss_pred HHHHH
Confidence 55443
No 455
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=25.07 E-value=1.2e+02 Score=31.75 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=35.9
Q ss_pred CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 040643 660 KNEV-SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVL 704 (968)
Q Consensus 660 ~d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll 704 (968)
||.. -||..|..-.+.||.++|++++++..+.|+.-=..||..-+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 4444 46799999999999999999999999999776556665444
No 456
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.97 E-value=3.2e+02 Score=28.23 Aligned_cols=53 Identities=25% Similarity=0.213 Sum_probs=45.4
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+++...+.++.|.+++++++.++|+++.-.---+-+|+..|-..-|.+-....
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~ 241 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYF 241 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHH
Confidence 44677889999999999999999999988888899999999988888765543
No 457
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=24.93 E-value=8.3e+02 Score=25.75 Aligned_cols=159 Identities=18% Similarity=0.203 Sum_probs=87.7
Q ss_pred hHHHhcCC-HHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHH
Q 040643 639 TLYAKCGS-IDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 639 ~~y~k~g~-~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a 716 (968)
+-+.+.|= ..=|.++|+... ++|+ |.+|+.+.+-+.-+.-+++ ++||..|--....-+..+|+-+-.
T Consensus 174 d~LVkeGi~l~F~~~lFk~~~~Ek~i---~~lis~Lrkg~md~rLmef--------fPpnkrs~E~Fak~Ft~agL~elv 242 (412)
T KOG2297|consen 174 DNLVKEGIALSFAVKLFKEWLVEKDI---NDLISSLRKGKMDDRLMEF--------FPPNKRSVEHFAKYFTDAGLKELV 242 (412)
T ss_pred hhHHHHhHHHHHHHHHHHHHHhhccH---HHHHHHHHhcChHhHHHHh--------cCCcchhHHHHHHHHhHhhHHHHH
Confidence 34455552 345677777654 5543 5677777666555544444 577776666555555555554332
Q ss_pred HHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh-C--CCCCC----HHHHHHHHHHHHhcCCh-hHHHHHH
Q 040643 717 LRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ-M--PIEPD----AMVWRTLLSACRVHKNM-EIGEYAA 788 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~-m--~~~p~----~~~~~~ll~~~~~~g~~-~~a~~~~ 788 (968)
.-.-.++.. ....+.-..+.+-..+...++|....+++ | .--|+ .++|.+++++-.-.++- -.|+++.
T Consensus 243 ey~~~q~~~----~a~kElq~~L~~q~s~e~p~~evi~~VKee~k~~nlPe~eVi~ivWs~iMsaveWnKkeelva~qal 318 (412)
T KOG2297|consen 243 EYHRNQQSE----GARKELQKELQEQVSEEDPVKEVILYVKEEMKRNNLPETEVIGIVWSGIMSAVEWNKKEELVAEQAL 318 (412)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCceEEeeeHhhhhHHHhhchHHHHHHHHHH
Confidence 221111110 01112223345555666667776665543 3 11233 57899999885444433 3566666
Q ss_pred HHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 789 NHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 789 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
+++-.-.| |.+.++.+|+-+-..-
T Consensus 319 rhlK~yaP--------LL~af~s~g~sEL~Ll 342 (412)
T KOG2297|consen 319 RHLKQYAP--------LLAAFCSQGQSELELL 342 (412)
T ss_pred HHHHhhhH--------HHHHHhcCChHHHHHH
Confidence 66654444 7788899998765443
No 458
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=24.93 E-value=3.6e+02 Score=28.02 Aligned_cols=20 Identities=20% Similarity=0.187 Sum_probs=14.2
Q ss_pred HHHHHcCCCHHHHHHHHHHH
Q 040643 186 ISGFSQNGYEREAILLFCQM 205 (968)
Q Consensus 186 i~~~~~~g~~~~A~~~~~~m 205 (968)
|.+++..++|.+++...-+-
T Consensus 90 IQALAEmnrWreVLsWvlqy 109 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQY 109 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 67788888888877655443
No 459
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.67 E-value=4.9e+02 Score=29.89 Aligned_cols=27 Identities=26% Similarity=0.397 Sum_probs=19.2
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhc
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQL 308 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 308 (968)
.-..++.-|.+.++.++|+.++..|.-
T Consensus 410 ~~~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 410 GLVELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred cHHHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 344567777777788888877777754
No 460
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=24.55 E-value=1.5e+02 Score=32.04 Aligned_cols=47 Identities=21% Similarity=0.248 Sum_probs=36.3
Q ss_pred chHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHH
Q 040643 816 DCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLG 866 (968)
Q Consensus 816 ~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 866 (968)
|+...+-++|++.|++-. |++.++..|.|..=+.+.+.+.++...+.
T Consensus 283 D~~~~Y~~~Lkk~Gv~v~----~~~~e~~~H~~~~~~~~~~~a~~~~~~i~ 329 (336)
T KOG1515|consen 283 DEGLAYAEKLKKAGVEVT----LIHYEDGFHGFHILDPSSKEAHALMDAIV 329 (336)
T ss_pred hhhHHHHHHHHHcCCeEE----EEEECCCeeEEEecCCchhhHHHHHHHHH
Confidence 677788889999998654 99999999999998877555555544443
No 461
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=24.42 E-value=4.6e+02 Score=27.28 Aligned_cols=21 Identities=14% Similarity=0.162 Sum_probs=15.8
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 040643 467 IVGFVQHGMFGEALELFEEME 487 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~ 487 (968)
|.+++..|++.+++...-+--
T Consensus 90 IQALAEmnrWreVLsWvlqyY 110 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYY 110 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHh
Confidence 778888888888887665543
No 462
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.15 E-value=8.7e+02 Score=25.69 Aligned_cols=139 Identities=12% Similarity=0.044 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCc--cchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHH
Q 040643 394 LNDLSESFQIFKQMQTEGLTPNQ--YTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFV 471 (968)
Q Consensus 394 ~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 471 (968)
.|+...|+.+++.+.......+. .|. ..+++...--...-..+-..+-.+|+++.
T Consensus 78 ~GDaR~aLN~LE~a~~~~~~~~~~~it~-----------------------~~~~~~~~~~~~~yDk~gd~HYd~iSAf~ 134 (300)
T PRK14700 78 EGDCRKILNLLERMFLISTRGDEIYLNK-----------------------ELFDQAVGETSRDFHREGKEFYEQLSAFH 134 (300)
T ss_pred CCHHHHHHHHHHHHHhhccccCCCccCH-----------------------HHHHHHHhHHHhcccCCcchhHHHHHHHH
Q ss_pred hc---CChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhccc-----chhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHc
Q 040643 472 QH---GMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQ-----ALNQGRQIHAQSYISGFSDDLSIGNALISLYARC 543 (968)
Q Consensus 472 ~~---g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 543 (968)
++ .+++.|+-++-+|++.|..|....=..++-|.-..| .+..+...+......|++--.......+-.++.+
T Consensus 135 KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~iG~PEa~i~La~aviyLA~a 214 (300)
T PRK14700 135 KSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEKLGMPEGRLVLAQAAIYLAVA 214 (300)
T ss_pred HHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHcC
Q ss_pred CCHHHHHHHHHh
Q 040643 544 GRIQEAYLVFNK 555 (968)
Q Consensus 544 g~~~~A~~~f~~ 555 (968)
-+-..+...++.
T Consensus 215 PKSNs~y~A~~~ 226 (300)
T PRK14700 215 PKSNACYKALAQ 226 (300)
T ss_pred CCchHHHHHHHH
No 463
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=23.98 E-value=3.6e+02 Score=28.48 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.0
Q ss_pred HHHHHHHhhcCCcchHHHHHH
Q 040643 803 VLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 803 ~~l~~~y~~~g~~~~a~~~~~ 823 (968)
..|+++|.+.++|.+|..+..
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~ 127 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLV 127 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHh
Confidence 458999999999999998766
No 464
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=23.98 E-value=2.2e+02 Score=20.50 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=26.3
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHH
Q 040643 469 GFVQHGMFGEALELFEEMENQGIQSDNIGFSSAIS 503 (968)
Q Consensus 469 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 503 (968)
...+.|-..++..++++|.+.|+..+...+..++.
T Consensus 11 ~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 11 LAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 34567777788888888888888877777766654
No 465
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=23.89 E-value=92 Score=23.91 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
|-.-.-..|.||.+.|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455678888888999988888887764
No 466
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=23.75 E-value=85 Score=25.36 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHcCcccCCCc
Q 040643 859 DKIYDYLGNLNRRVAEIGYVQGRYS 883 (968)
Q Consensus 859 ~~i~~~l~~l~~~~~~~g~~~~~~~ 883 (968)
.+|.+.+++-..+++..||.||.-.
T Consensus 8 i~il~~ie~~inELk~dG~ePDivL 32 (85)
T PF08967_consen 8 IRILELIEEKINELKEDGFEPDIVL 32 (85)
T ss_dssp HHHHHHHHHHHHHHHHTT----EEE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 4677778888888999999999644
No 467
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=23.45 E-value=1.6e+03 Score=28.40 Aligned_cols=239 Identities=8% Similarity=-0.074 Sum_probs=111.3
Q ss_pred HHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCc
Q 040643 169 KVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSE 248 (968)
Q Consensus 169 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~ 248 (968)
.+...+..+|...-...+..+.+.+.. +++..+...... ++...-...+.++...+........+..+++ .+|
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~~~-~~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~---~~d 697 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETTPP-GFGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG---SPD 697 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhcch-hHHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---CCC
Confidence 444445556665555666666666643 344444444432 2333333444444333211111122222222 245
Q ss_pred hhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhcc
Q 040643 249 TFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASV 328 (968)
Q Consensus 249 ~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~ 328 (968)
..+-...+..+...+.- ....+...+..+|...=...+.++.+.+..+.. .... -.+|...-.....++...
T Consensus 698 ~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL~~~ 769 (897)
T PRK13800 698 PVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGLATL 769 (897)
T ss_pred HHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHHHHh
Confidence 55555555555544321 223444555566665555566666655443221 1111 123444444455555554
Q ss_pred CChHH-HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHH-HHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHH
Q 040643 329 GAFRT-GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETA-YKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQ 406 (968)
Q Consensus 329 ~~~~~-a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 406 (968)
+..+. +...+..+. -++|..+-.+.+..+.+.|....+ ..+...+.++|...-...+.++.+.+. +++...+..
T Consensus 770 ~~~~~~~~~~L~~ll---~D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~ 845 (897)
T PRK13800 770 GAGGAPAGDAVRALT---GDPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVE 845 (897)
T ss_pred ccccchhHHHHHHHh---cCCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHH
Confidence 43322 122222222 245667777777777777765544 233344445555455555666666554 344455444
Q ss_pred HHhcCCCCCccchhhhhhhhccC
Q 040643 407 MQTEGLTPNQYTYPTILRTCTSL 429 (968)
Q Consensus 407 m~~~g~~p~~~t~~~ll~a~~~~ 429 (968)
+.+ .|+...=...+.++.+.
T Consensus 846 ~L~---D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 846 ALT---DPHLDVRKAAVLALTRW 865 (897)
T ss_pred Hhc---CCCHHHHHHHHHHHhcc
Confidence 443 33444444445555443
No 468
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.40 E-value=1.5e+02 Score=23.70 Aligned_cols=38 Identities=21% Similarity=0.270 Sum_probs=29.8
Q ss_pred CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCc
Q 040643 843 NSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYS 883 (968)
Q Consensus 843 ~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~ 883 (968)
...-.|-.+| +..++|.+.|......+.+.||.|-...
T Consensus 5 D~T~~f~~~d---~~~~~v~e~L~~VY~sL~ekGYNpiNQi 42 (88)
T COG4472 5 DETMRFDVGD---SDKKDVKETLNDVYNSLEEKGYNPINQI 42 (88)
T ss_pred cceeeeecCC---ChHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 3455688888 5567888889999999999999986544
No 469
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=23.14 E-value=1.4e+02 Score=25.09 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=32.2
Q ss_pred HhcCChhHHHHHHHHHHccCCCCc---------chHHHHHHHHhhcCCcchHHHHHH
Q 040643 776 RVHKNMEIGEYAANHLLELEPEDS---------ATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~~~---------~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
...||+..|.....+.++....+. .+...++.++...|.+++|....+
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~ 65 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALE 65 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 345666666666666666533222 234668889999999999988544
No 470
>KOG0119 consensus Splicing factor 1/branch point binding protein (RRM superfamily) [RNA processing and modification]
Probab=22.94 E-value=1.3e+02 Score=33.38 Aligned_cols=91 Identities=21% Similarity=0.329 Sum_probs=45.6
Q ss_pred CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccCCchhhcccchhccHHHHHHHHhhcCCCCCCEEEe
Q 040643 843 NSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRYSLWSDLEQEQKDPCVYIHSEKLAIAFGLLSLSDSMPILVI 922 (968)
Q Consensus 843 ~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~hse~la~~~~~~~~~~~~~~~~~ 922 (968)
..+|..+++|. -+.|.+..+.++..|.++--+|+... |+ |..-| +| |+.+- -++|+.
T Consensus 203 epLH~~Isadt----~eki~~Ai~vienli~~av~~~e~~n---~l----~~~Ql---re-------la~lN--gt~r~~ 259 (554)
T KOG0119|consen 203 EPLHCLISADT----QEKIKKAIAVIENLIQSAVSVPEGQN---DL----KRLQL---RE-------LARLN--GTLRDD 259 (554)
T ss_pred cceeEEEecch----HHHHHHHHHHHHHHHHhhccCccccc---cc----cHHHH---HH-------HHHhC--CCCCcc
Confidence 45788888885 24455555555555555444444322 11 11111 11 12222 246666
Q ss_pred cccccCChhhHHHHHHHHhhcceEEEecCCcccccCCCcC-CCCCC
Q 040643 923 KNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVC-SCRDY 967 (968)
Q Consensus 923 kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~c-sc~d~ 967 (968)
.| |+|.-|-+ +|-.=+. =..|||++++ +| -||+|
T Consensus 260 d~-~~c~~cg~--------~~H~q~~-cp~r~~~~~n-~c~~cg~~ 294 (554)
T KOG0119|consen 260 DN-RACRNCGS--------TGHKQYD-CPGRIPNTTN-VCKICGPL 294 (554)
T ss_pred cc-ccccccCC--------Ccccccc-CCcccccccc-cccccCCc
Confidence 66 88888732 2211111 1245999999 77 46654
No 471
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=22.77 E-value=2.3e+02 Score=24.64 Aligned_cols=21 Identities=14% Similarity=0.426 Sum_probs=11.1
Q ss_pred HHHHHHhcCChhhHHHHHHHh
Q 040643 567 LISGFAQSGYCEGALQVFSQM 587 (968)
Q Consensus 567 li~~~~~~g~~~~A~~l~~~m 587 (968)
++..|..+|+.++|..-++++
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHh
Confidence 445555555666665555554
No 472
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=22.56 E-value=9e+02 Score=27.34 Aligned_cols=34 Identities=35% Similarity=0.354 Sum_probs=19.3
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..||.-.|..++++++++ |+-++.|..|+.+|+.
T Consensus 521 ~Lgd~i~AL~~a~kLLq~-~~lS~~~kfLGHiYAa 554 (696)
T KOG2471|consen 521 ELGDPIKALSAATKLLQL-ADLSKIYKFLGHIYAA 554 (696)
T ss_pred HhcChhhHHHHHHHHHhh-hhhhhHHHHHHHHHHH
Confidence 345555566666666554 3345566666666653
No 473
>PF10925 DUF2680: Protein of unknown function (DUF2680); InterPro: IPR024485 Members in this family of proteins are annotated as YckD however currently no function is known.
Probab=22.47 E-value=94 Score=23.65 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=24.7
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHHcCccc
Q 040643 851 GDRLHPLADKIYDYLGNLNRRVAEIGYVQ 879 (968)
Q Consensus 851 ~d~~h~~~~~i~~~l~~l~~~~~~~g~~~ 879 (968)
|--+..+++.|...++.-...+.+.||+|
T Consensus 31 G~iTqeqAd~ik~~id~~~~~~~qnGf~p 59 (59)
T PF10925_consen 31 GVITQEQADAIKKHIDQRQEYMQQNGFVP 59 (59)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44456788999999999999999999998
No 474
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=22.46 E-value=5.9e+02 Score=25.78 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM-PNH 697 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~ 697 (968)
|.+.++.||. ....|+++.|+++.+-+++.|.. |+.
T Consensus 83 d~Vl~~~mvW-~~D~Gd~~~AL~ia~yAI~~~l~~Pd~ 119 (230)
T PHA02537 83 DDVLMTVMVW-RFDIGDFDGALEIAEYALEHGLTMPDQ 119 (230)
T ss_pred CCeeeEeeee-eeeccCHHHHHHHHHHHHHcCCCCCcc
Confidence 3333333433 34678999999999999998854 553
No 475
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=22.32 E-value=4.9e+02 Score=23.46 Aligned_cols=65 Identities=20% Similarity=0.103 Sum_probs=40.3
Q ss_pred cCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHH
Q 040643 727 YGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVW-RTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 727 ~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~-~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
||.+-...+-.++.-.|.=.|..++|.++++....-++-... ..+|..|+...+-+.-..+-++.
T Consensus 60 YGkP~kLscvEAlAAaLyI~G~~~~A~~lL~~FkWG~~F~~LN~elLe~Y~~~~~~~ev~~~q~~~ 125 (127)
T PF04034_consen 60 YGKPCKLSCVEALAAALYILGFKEQAEELLSKFKWGHTFLELNKELLEAYAKCKTSEEVIEIQNEY 125 (127)
T ss_pred cCCcccccHHHHHHHHHHHcCCHHHHHHHHhcCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 343334555556677777788888888888887766663333 44667776666655544444443
No 476
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=22.28 E-value=57 Score=35.82 Aligned_cols=127 Identities=17% Similarity=0.275 Sum_probs=65.1
Q ss_pred CCCCCccchhhhhhhhccCCchhhhHHHHHhh-------------------CChHHHHHHHhhCCCCC------------
Q 040643 411 GLTPNQYTYPTILRTCTSLGALSLGEQIHTQL-------------------GNLNTAQEILRRLPEDD------------ 459 (968)
Q Consensus 411 g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~-------------------~~~~~a~~~~~~~~~~~------------ 459 (968)
|+.||..+|.+-..+-.+......|+..+..+ |.-+.-.++|+.+.-.|
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~ 489 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAI 489 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCC
Confidence 56666666666555544444444444444333 23334455666554221
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhc------ccchhhhhhhhHhhhhhcCCCCchhh
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAG------IQALNQGRQIHAQSYISGFSDDLSIG 533 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~------~~~~~~a~~i~~~~~~~g~~~~~~~~ 533 (968)
...|+.|..++.++-.+.+ +.+=.+|...|-+-+.++. +|.+ ..+...|+|+-.+.+-.-+.|.+.+|
T Consensus 490 psPy~iL~~cl~Rn~g~~d-~~ik~E~i~~~nqkse~im-----~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~tw 563 (650)
T KOG4334|consen 490 PSPYNILRDCLSRNLGWND-LVIKKEMIGNGNQKSEVIM-----ILGKHTEEAECKNKRQGKQLASQRILQKLHPHLLTW 563 (650)
T ss_pred CCHHHHHHHHHHhhcCCcc-eeeeeeccCCCCccceeEe-----eeccceeeeeeechhHHHHHHHHHHHHHhCHHhhhH
Confidence 1246666666666644431 1222334333333333322 2222 23455666666666666666777777
Q ss_pred hhHHHHHHHc
Q 040643 534 NALISLYARC 543 (968)
Q Consensus 534 ~~Li~~y~k~ 543 (968)
.+|+.+|++.
T Consensus 564 GSlLriYGr~ 573 (650)
T KOG4334|consen 564 GSLLRIYGRL 573 (650)
T ss_pred HHHHHHhhhh
Confidence 7777777654
No 477
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=22.02 E-value=27 Score=29.34 Aligned_cols=11 Identities=64% Similarity=1.603 Sum_probs=8.9
Q ss_pred cCCCcCCCCCC
Q 040643 957 FEGGVCSCRDY 967 (968)
Q Consensus 957 f~~g~csc~d~ 967 (968)
-+.|-|||.||
T Consensus 47 l~~gfCSCp~~ 57 (117)
T COG5431 47 LEGGFCSCPDF 57 (117)
T ss_pred EEcCcccCHHH
Confidence 46789999886
No 478
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=21.82 E-value=5.9e+02 Score=22.88 Aligned_cols=43 Identities=9% Similarity=0.202 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCC-hhHHhHHhhHHHhcCCHHHHHHHHhc
Q 040643 614 QGKQVHAMIIKTGYDSE-TEASNSLITLYAKCGSIDDAKREFLE 656 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~-~~~~~~li~~y~k~g~~~~A~~~f~~ 656 (968)
.+..++..|...|+... ...|......+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777777776554 45667777778888888888888763
No 479
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.82 E-value=4.3e+02 Score=30.83 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=72.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHH
Q 040643 386 VMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTA 465 (968)
Q Consensus 386 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 465 (968)
++..+|..+|++..+.++++......-. .+.=...+|.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~------------------------------------------~k~~l~~~nl 70 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKG------------------------------------------DKILLPMINL 70 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcC------------------------------------------CeeehhHHHH
Confidence 6777888888888888877766543100 0001225677
Q ss_pred HHHHHHhcCChh------HHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH
Q 040643 466 MIVGFVQHGMFG------EALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISL 539 (968)
Q Consensus 466 li~~~~~~g~~~------~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 539 (968)
.|+.+.++|.++ .|.+++++ ..+.-|..||..++.+......-..+..+....+... .|.+++.
T Consensus 71 yi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all~~~sln~t~~~l~~pvl~~~i~~s-------~ngv~di 140 (1117)
T COG5108 71 YIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALLCQASLNPTQRQLGLPVLHELIHRS-------ANGVIDI 140 (1117)
T ss_pred HHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHHHHhhcChHhHHhccHHHHHHHHhh-------hhhHHHH
Confidence 777778888664 33333333 3377799999999988877666666776666665532 1233333
Q ss_pred HH--HcCCHHHHHHHHHhCC
Q 040643 540 YA--RCGRIQEAYLVFNKID 557 (968)
Q Consensus 540 y~--k~g~~~~A~~~f~~m~ 557 (968)
+. ..=.+++..-+.+++.
T Consensus 141 ~~~~~v~s~~ev~limd~l~ 160 (1117)
T COG5108 141 LMHESVFSPEEVKLIMDQLN 160 (1117)
T ss_pred HhhhccCCHHHHHHHHHhcC
Confidence 32 2224566666666654
No 480
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=21.78 E-value=1.4e+02 Score=31.37 Aligned_cols=41 Identities=29% Similarity=0.391 Sum_probs=34.4
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHH
Q 040643 462 SWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAI 502 (968)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 502 (968)
.||.-|..-.+.|+.++|+.|+++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 47899999999999999999999999999876666665443
No 481
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=4.5e+02 Score=30.31 Aligned_cols=35 Identities=26% Similarity=0.291 Sum_probs=21.9
Q ss_pred HhcCChhHHHHHHHHHHccCCC-CcchHHHHHHHHh
Q 040643 776 RVHKNMEIGEYAANHLLELEPE-DSATYVLLSNIYA 810 (968)
Q Consensus 776 ~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~ 810 (968)
...|=..-|...++.++.++|. ||-.-..+..+|+
T Consensus 353 ~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 353 AQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred HhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 4455666666677777777776 6655555555555
No 482
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=21.63 E-value=4.8e+02 Score=21.77 Aligned_cols=39 Identities=8% Similarity=0.005 Sum_probs=31.2
Q ss_pred hcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHH
Q 040643 362 KCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESF 401 (968)
Q Consensus 362 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 401 (968)
..|+.+.|+++++.++ +..-.|...++++-..|.-.-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5588888999998888 88888888888888887765543
No 483
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=21.41 E-value=1e+03 Score=25.62 Aligned_cols=89 Identities=11% Similarity=0.032 Sum_probs=44.6
Q ss_pred HHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHH
Q 040643 153 PLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEI 232 (968)
Q Consensus 153 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 232 (968)
.+.+..++.++.+.+..+-..++.-......++..++-...-.+...+.+.+..+.. ||......++++.+.......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~--~d~~~~~a~lRAls~~~~~~~ 248 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA--PDLELLSALLRALSSAPASDL 248 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHcCCCchhH
Confidence 345556666665555555555544333344455555444443333333222222222 677777777777766655555
Q ss_pred HHHHHHHHHHh
Q 040643 233 GEQFHGLIFKW 243 (968)
Q Consensus 233 a~~~~~~~~~~ 243 (968)
.......++..
T Consensus 249 ~~~~i~~~L~~ 259 (340)
T PF12069_consen 249 VAILIDALLQS 259 (340)
T ss_pred HHHHHHHHhcC
Confidence 44444444443
No 484
>PF14376 Haem_bd: Haem-binding domain
Probab=20.91 E-value=28 Score=31.99 Aligned_cols=8 Identities=50% Similarity=1.352 Sum_probs=6.6
Q ss_pred ccCChhhH
Q 040643 926 RVCNDCHN 933 (968)
Q Consensus 926 r~c~dch~ 933 (968)
+-|.||||
T Consensus 42 ~~CydCHS 49 (137)
T PF14376_consen 42 NSCYDCHS 49 (137)
T ss_pred ccccccCC
Confidence 45999996
No 485
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.53 E-value=8.1e+02 Score=23.98 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=56.4
Q ss_pred hCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-------
Q 040643 555 KIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGY------- 627 (968)
Q Consensus 555 ~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~------- 627 (968)
+-+++..+.|-.....-++.-+.+++-+.|-- ..=.+++-.|-+.-.+.+|+.+++.+.+..+
T Consensus 101 d~Kdk~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKG 170 (233)
T PF14669_consen 101 DSKDKPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKG 170 (233)
T ss_pred cccccCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 33344445555555555544444443332210 1123566778888899999999888765432
Q ss_pred -------CCChhHHhHHhhHHHhcCCHHHHHHHHhcC
Q 040643 628 -------DSETEASNSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 628 -------~~~~~~~~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
.+--.+.|.-..++.++|++|-|..++.+-
T Consensus 171 L~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 171 LTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred ccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 223445577778888889998888888753
No 486
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.38 E-value=8.3e+02 Score=24.04 Aligned_cols=87 Identities=15% Similarity=0.073 Sum_probs=47.6
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCCCh--hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHH--HHHHHHHHHhcCCHHHH
Q 040643 606 AANLANIKQGKQVHAMIIKTGYDSET--EASNSLITLYAKCGSIDDAKREFLEMPEKNEVS--WNAMITGFSQHGYALEA 681 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~--~~~li~~~~~~g~~~~A 681 (968)
....++++.|...+...+...-+.+. ..--.|.......|..|+|...++....++-.+ -..-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 34455666666655555432111111 111223345556777777777777766554332 22233456777777777
Q ss_pred HHHHHHHHHCC
Q 040643 682 INLFEKMKKHD 692 (968)
Q Consensus 682 ~~l~~~m~~~g 692 (968)
..-|++.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 77777777754
No 487
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=20.30 E-value=38 Score=37.04 Aligned_cols=100 Identities=14% Similarity=0.111 Sum_probs=57.8
Q ss_pred CCcchHHHhhhccC--CCCc----------cchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHH-HHHHhhcCC
Q 040643 59 GDLDSAMKIFDDMS--KRTV----------FSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVG-VLRACIGSG 125 (968)
Q Consensus 59 g~~~~A~~~f~~~~--~~~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~ 125 (968)
|.-..-+++|+.+. .|++ ..|+.|..++.++-.|.+. .+=.+|...+-+-+.++... =.+.-+.+.
T Consensus 461 ~k~q~~le~F~~I~Iedprv~e~ctk~~~psPy~iL~~cl~Rn~g~~d~-~ik~E~i~~~nqkse~im~~Gkht~~~~ck 539 (650)
T KOG4334|consen 461 GKQQGFLELFKKIKIEDPRVVEMCTKCAIPSPYNILRDCLSRNLGWNDL-VIKKEMIGNGNQKSEVIMILGKHTEEAECK 539 (650)
T ss_pred ccchhHHHHhhcccccCchHHHHhhhcCCCCHHHHHHHHHHhhcCCcce-eeeeeccCCCCccceeEeeeccceeeeeee
Confidence 34455667888764 3322 3578888888877666432 22233444444444443210 000011122
Q ss_pred CccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhc
Q 040643 126 NVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKN 161 (968)
Q Consensus 126 ~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~ 161 (968)
+.. +++|+-.+-+-.-+.|...+|.+|+.+|++.
T Consensus 540 nkr--~gkQlASQ~ilq~lHPh~~twGSlLriYGr~ 573 (650)
T KOG4334|consen 540 NKR--QGKQLASQRILQKLHPHLLTWGSLLRIYGRL 573 (650)
T ss_pred chh--HHHHHHHHHHHHHhCHHhhhHHHHHHHhhhh
Confidence 334 7788888777777888888888888888776
Done!