Query 040643
Match_columns 968
No_of_seqs 937 out of 5620
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 16:44:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040643.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040643hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 6.4E-40 2.2E-44 391.1 34.8 499 258-828 62-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.3E-37 7.9E-42 369.0 39.4 461 291-829 64-546 (597)
3 4g26_A Pentatricopeptide repea 99.9 2.8E-26 9.6E-31 261.3 18.1 184 562-746 27-223 (501)
4 4g26_A Pentatricopeptide repea 99.9 1.5E-25 5.2E-30 255.3 18.6 184 180-363 27-223 (501)
5 1w3b_A UDP-N-acetylglucosamine 99.9 2E-22 6.8E-27 225.7 38.7 373 388-814 6-388 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.8E-22 2.7E-26 220.8 38.0 350 467-827 6-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 1.2E-22 4.2E-27 232.3 25.6 346 458-834 24-412 (450)
8 1xi4_A Clathrin heavy chain; a 99.9 7.2E-17 2.5E-21 192.9 66.0 726 16-820 488-1376(1630)
9 2gw1_A Mitochondrial precursor 99.9 2.6E-20 9E-25 216.8 28.8 457 282-807 8-491 (514)
10 2gw1_A Mitochondrial precursor 99.9 5.9E-20 2E-24 213.9 31.3 422 353-827 9-477 (514)
11 1xi4_A Clathrin heavy chain; a 99.8 5.4E-15 1.8E-19 177.0 65.9 381 318-758 988-1380(1630)
12 3fp2_A TPR repeat-containing p 99.8 2.7E-18 9.3E-23 201.1 33.1 417 352-827 27-490 (537)
13 3fp2_A TPR repeat-containing p 99.8 2E-18 7E-23 202.1 28.1 447 281-805 26-502 (537)
14 2y4t_A DNAJ homolog subfamily 99.8 5.5E-18 1.9E-22 193.6 28.2 290 531-827 27-357 (450)
15 1b89_A Protein (clathrin heavy 99.8 1.8E-17 6.2E-22 179.2 19.3 326 436-797 10-344 (449)
16 3ieg_A DNAJ homolog subfamily 99.7 2.3E-16 7.9E-21 173.7 28.0 308 460-811 3-352 (359)
17 3ieg_A DNAJ homolog subfamily 99.7 5.6E-16 1.9E-20 170.6 28.7 312 530-874 3-355 (359)
18 3hym_B Cell division cycle pro 99.7 5.3E-16 1.8E-20 168.7 26.9 286 526-815 18-321 (330)
19 1b89_A Protein (clathrin heavy 99.7 5.5E-16 1.9E-20 167.6 25.0 289 159-481 14-303 (449)
20 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.9E-20 168.2 21.3 275 542-823 37-354 (368)
21 3hym_B Cell division cycle pro 99.7 7.8E-15 2.7E-19 159.3 26.3 260 559-825 20-296 (330)
22 2ooe_A Cleavage stimulation fa 99.7 1.8E-13 6.2E-18 159.4 36.6 208 614-827 256-491 (530)
23 2ooe_A Cleavage stimulation fa 99.6 1.1E-13 3.8E-18 161.2 33.6 214 578-798 255-496 (530)
24 3mkr_A Coatomer subunit epsilo 99.6 1.2E-14 4.2E-19 154.3 22.2 239 567-819 40-285 (291)
25 1fch_A Peroxisomal targeting s 99.6 6.4E-15 2.2E-19 162.9 19.8 285 570-872 34-343 (368)
26 4eqf_A PEX5-related protein; a 99.6 6.5E-15 2.2E-19 162.8 18.9 228 597-827 66-309 (365)
27 4eqf_A PEX5-related protein; a 99.6 3.8E-15 1.3E-19 164.7 16.9 257 560-823 64-351 (365)
28 2xm6_A Protein corresponding t 99.6 3.3E-13 1.1E-17 155.5 33.0 268 531-811 148-452 (490)
29 3spa_A Mtrpol, DNA-directed RN 99.6 3.4E-16 1.2E-20 181.8 7.6 130 628-758 124-261 (1134)
30 3mkr_A Coatomer subunit epsilo 99.6 5.3E-14 1.8E-18 149.4 21.7 244 569-827 7-263 (291)
31 3spa_A Mtrpol, DNA-directed RN 99.6 7E-16 2.4E-20 179.2 6.9 151 561-747 127-286 (1134)
32 4g1t_A Interferon-induced prot 99.6 1.9E-13 6.6E-18 156.8 27.2 363 460-839 51-470 (472)
33 3cv0_A Peroxisome targeting si 99.6 3.3E-14 1.1E-18 154.2 19.1 251 532-823 23-310 (327)
34 2xm6_A Protein corresponding t 99.6 3E-12 1E-16 147.5 34.3 351 458-829 37-433 (490)
35 3cv0_A Peroxisome targeting si 99.5 8.2E-13 2.8E-17 143.0 25.0 256 459-758 20-311 (327)
36 2pl2_A Hypothetical conserved 99.5 3.2E-13 1.1E-17 136.7 17.0 191 628-823 2-209 (217)
37 4g1t_A Interferon-induced prot 99.5 3.2E-12 1.1E-16 146.6 23.7 381 350-806 51-471 (472)
38 3uq3_A Heat shock protein STI1 99.5 1.7E-12 5.7E-17 135.1 18.7 216 563-827 7-235 (258)
39 3uq3_A Heat shock protein STI1 99.4 1.9E-12 6.6E-17 134.6 18.2 234 530-808 5-256 (258)
40 1xnf_A Lipoprotein NLPI; TPR, 99.4 2.2E-12 7.6E-17 135.8 18.5 239 574-821 18-268 (275)
41 3u4t_A TPR repeat-containing p 99.4 3.8E-12 1.3E-16 133.8 19.6 254 532-814 5-270 (272)
42 2ho1_A Type 4 fimbrial biogene 99.4 8.3E-12 2.8E-16 129.5 19.0 195 631-828 37-238 (252)
43 2vq2_A PILW, putative fimbrial 99.4 1.1E-11 3.9E-16 125.7 18.3 195 630-827 7-210 (225)
44 2h6f_A Protein farnesyltransfe 99.4 1.2E-11 4.2E-16 135.6 19.5 243 562-812 98-366 (382)
45 2ho1_A Type 4 fimbrial biogene 99.4 4.9E-11 1.7E-15 123.6 22.2 206 561-805 37-249 (252)
46 3u4t_A TPR repeat-containing p 99.3 6.4E-11 2.2E-15 124.3 21.7 225 497-725 5-249 (272)
47 2vq2_A PILW, putative fimbrial 99.3 5.9E-11 2E-15 120.4 20.2 209 560-807 7-224 (225)
48 2q7f_A YRRB protein; TPR, prot 99.3 1.3E-11 4.5E-16 127.1 15.1 175 633-812 59-240 (243)
49 2q7f_A YRRB protein; TPR, prot 99.3 1.6E-11 5.5E-16 126.4 15.0 195 629-827 21-221 (243)
50 2h6f_A Protein farnesyltransfe 99.3 5.9E-11 2E-15 130.2 19.3 221 598-825 99-344 (382)
51 3e4b_A ALGK; tetratricopeptide 99.3 1.3E-10 4.3E-15 131.8 22.2 343 466-830 9-389 (452)
52 4abn_A Tetratricopeptide repea 99.3 1.3E-11 4.6E-16 140.7 13.7 204 612-821 84-314 (474)
53 1ouv_A Conserved hypothetical 99.3 3.2E-10 1.1E-14 119.2 22.8 223 562-798 7-255 (273)
54 3vtx_A MAMA; tetratricopeptide 99.3 1.1E-10 3.8E-15 114.4 17.5 162 661-827 4-169 (184)
55 3e4b_A ALGK; tetratricopeptide 99.3 7.9E-10 2.7E-14 125.2 27.0 358 387-809 9-400 (452)
56 2pl2_A Hypothetical conserved 99.3 1.2E-10 4.2E-15 117.6 17.9 190 528-758 3-210 (217)
57 1ouv_A Conserved hypothetical 99.2 8.6E-10 2.9E-14 115.9 24.2 221 597-829 7-252 (273)
58 1xnf_A Lipoprotein NLPI; TPR, 99.2 9.6E-11 3.3E-15 123.1 16.1 215 608-828 17-244 (275)
59 4gyw_A UDP-N-acetylglucosamine 99.2 9.1E-11 3.1E-15 139.1 17.4 160 661-825 8-171 (723)
60 3sf4_A G-protein-signaling mod 99.2 9.5E-11 3.2E-15 131.0 16.6 193 633-825 89-333 (406)
61 3sf4_A G-protein-signaling mod 99.2 2.7E-11 9.4E-16 135.5 11.8 171 647-817 163-365 (406)
62 4a1s_A PINS, partner of inscut 99.2 4.5E-11 1.5E-15 134.2 12.9 195 632-826 127-370 (411)
63 3ro2_A PINS homolog, G-protein 99.2 1.3E-10 4.4E-15 125.9 16.1 257 569-827 13-331 (338)
64 3vtx_A MAMA; tetratricopeptide 99.2 2E-10 6.8E-15 112.5 14.4 166 629-799 3-175 (184)
65 4e6h_A MRNA 3'-END-processing 99.2 5.2E-08 1.8E-12 114.0 36.0 217 580-801 328-577 (679)
66 2ond_A Cleavage stimulation fa 99.2 2.2E-09 7.5E-14 114.9 22.2 216 578-800 33-276 (308)
67 4e6h_A MRNA 3'-END-processing 99.2 2.2E-08 7.4E-13 117.3 32.1 141 236-377 54-221 (679)
68 4a1s_A PINS, partner of inscut 99.1 1.2E-10 4.1E-15 130.7 11.3 259 536-796 54-374 (411)
69 4i17_A Hypothetical protein; T 99.1 1.1E-09 3.9E-14 111.4 16.8 204 596-811 7-226 (228)
70 3ro2_A PINS homolog, G-protein 99.1 6.4E-10 2.2E-14 120.3 15.9 276 462-797 7-335 (338)
71 2ond_A Cleavage stimulation fa 99.1 3E-09 1E-13 113.9 18.8 210 613-828 33-270 (308)
72 3nf1_A KLC 1, kinesin light ch 99.1 1.3E-10 4.5E-15 124.5 8.2 169 632-825 112-304 (311)
73 3nf1_A KLC 1, kinesin light ch 99.1 1.3E-10 4.6E-15 124.4 8.2 171 561-759 27-221 (311)
74 3as5_A MAMA; tetratricopeptide 99.1 2.7E-09 9.2E-14 104.1 16.2 157 634-827 11-172 (186)
75 3ulq_A Response regulator aspa 99.1 4E-09 1.4E-13 116.9 19.4 225 570-794 112-368 (383)
76 4abn_A Tetratricopeptide repea 99.0 1.4E-09 4.8E-14 124.0 15.0 176 647-827 84-286 (474)
77 4i17_A Hypothetical protein; T 99.0 3E-09 1E-13 108.2 15.6 186 630-827 6-208 (228)
78 3as5_A MAMA; tetratricopeptide 99.0 6.5E-09 2.2E-13 101.3 16.3 168 597-801 9-180 (186)
79 3ulq_A Response regulator aspa 99.0 3.2E-09 1.1E-13 117.7 15.3 222 603-825 110-365 (383)
80 1hz4_A MALT regulatory protein 99.0 7.8E-08 2.7E-12 106.0 24.9 192 634-825 96-319 (373)
81 4gyw_A UDP-N-acetylglucosamine 98.9 2.5E-09 8.7E-14 126.7 13.0 163 630-797 8-177 (723)
82 4ga2_A E3 SUMO-protein ligase 98.9 1.6E-09 5.4E-14 102.0 7.2 134 676-814 11-149 (150)
83 3qky_A Outer membrane assembly 98.9 6.7E-08 2.3E-12 100.5 18.7 202 631-875 15-248 (261)
84 3edt_B KLC 2, kinesin light ch 98.9 1E-08 3.5E-13 107.7 12.2 219 608-826 13-279 (283)
85 3q15_A PSP28, response regulat 98.9 1.2E-07 4.2E-12 104.6 21.4 226 568-793 108-364 (378)
86 3q15_A PSP28, response regulat 98.8 4.9E-08 1.7E-12 107.9 17.7 297 528-825 8-362 (378)
87 1qqe_A Vesicular transport pro 98.8 5.6E-08 1.9E-12 103.0 15.9 183 639-823 45-264 (292)
88 1qqe_A Vesicular transport pro 98.8 3.9E-08 1.3E-12 104.2 14.4 217 545-800 32-275 (292)
89 1hz4_A MALT regulatory protein 98.8 6.4E-07 2.2E-11 98.6 24.6 258 537-797 21-325 (373)
90 2pzi_A Probable serine/threoni 98.8 2.6E-08 8.9E-13 118.9 14.0 188 607-801 402-609 (681)
91 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.4E-07 4.7E-12 95.5 16.5 179 632-830 5-215 (225)
92 3qky_A Outer membrane assembly 98.7 1.1E-07 3.9E-12 98.7 15.9 200 596-817 15-250 (261)
93 3qou_A Protein YBBN; thioredox 98.7 1.1E-07 3.6E-12 100.5 14.9 174 647-825 102-282 (287)
94 3edt_B KLC 2, kinesin light ch 98.7 1.5E-07 5E-12 98.7 15.3 197 599-795 46-282 (283)
95 4ga2_A E3 SUMO-protein ligase 98.7 5.9E-08 2E-12 91.0 10.2 116 703-821 3-121 (150)
96 2pzi_A Probable serine/threoni 98.7 2.1E-07 7.2E-12 111.0 17.6 181 572-759 402-602 (681)
97 3mv2_B Coatomer subunit epsilo 98.7 2.9E-06 1E-10 87.9 23.2 174 650-828 85-282 (310)
98 2fo7_A Synthetic consensus TPR 98.6 4.4E-07 1.5E-11 82.6 14.4 126 664-825 3-129 (136)
99 2r5s_A Uncharacterized protein 98.6 1.8E-07 6E-12 90.6 11.9 73 751-823 92-168 (176)
100 2vsy_A XCC0866; transferase, g 98.6 3E-07 1E-11 107.6 15.2 158 644-806 2-169 (568)
101 2fo7_A Synthetic consensus TPR 98.6 4.2E-07 1.4E-11 82.8 12.6 95 735-829 3-99 (136)
102 3gyz_A Chaperone protein IPGC; 98.5 1.9E-07 6.3E-12 87.3 9.0 101 727-827 29-132 (151)
103 3urz_A Uncharacterized protein 98.5 3.7E-07 1.3E-11 91.0 11.9 153 640-798 13-190 (208)
104 4gco_A Protein STI-1; structur 98.5 3.7E-07 1.2E-11 82.6 9.9 107 700-809 16-125 (126)
105 4gco_A Protein STI-1; structur 98.5 3.5E-07 1.2E-11 82.6 9.6 99 729-827 8-109 (126)
106 2vsy_A XCC0866; transferase, g 98.5 4E-07 1.4E-11 106.6 12.7 147 675-826 2-155 (568)
107 3mv2_B Coatomer subunit epsilo 98.5 7.9E-07 2.7E-11 92.2 12.4 133 664-803 138-291 (310)
108 3rjv_A Putative SEL1 repeat pr 98.5 5E-06 1.7E-10 83.0 17.7 171 650-829 5-198 (212)
109 2r5s_A Uncharacterized protein 98.5 1.4E-06 4.8E-11 84.1 13.1 153 634-792 9-171 (176)
110 2vgx_A Chaperone SYCD; alterna 98.5 3.1E-07 1.1E-11 85.8 8.0 100 728-827 15-117 (148)
111 2ifu_A Gamma-SNAP; membrane fu 98.4 2.4E-06 8.1E-11 91.1 16.0 219 574-820 4-253 (307)
112 2c2l_A CHIP, carboxy terminus 98.4 4.5E-07 1.5E-11 95.2 9.1 190 630-827 3-198 (281)
113 3urz_A Uncharacterized protein 98.4 2.3E-06 7.8E-11 85.2 13.9 158 663-826 5-184 (208)
114 2yhc_A BAMD, UPF0169 lipoprote 98.4 3.5E-06 1.2E-10 85.1 15.4 182 598-800 6-219 (225)
115 3dra_A Protein farnesyltransfe 98.4 9.8E-06 3.3E-10 85.0 18.6 147 676-827 124-286 (306)
116 2xcb_A PCRH, regulatory protei 98.4 1.2E-06 4E-11 81.2 10.3 95 733-827 18-114 (142)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.4 4E-06 1.4E-10 83.7 14.5 145 634-799 9-155 (213)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.4 2.5E-06 8.4E-11 85.2 12.9 121 703-828 12-150 (213)
119 2qfc_A PLCR protein; TPR, HTH, 98.4 8.5E-06 2.9E-10 86.0 17.6 158 663-820 76-258 (293)
120 2uy1_A Cleavage stimulation fa 98.3 7.1E-05 2.4E-09 84.9 25.1 374 261-690 6-412 (493)
121 3u3w_A Transcriptional activat 98.3 2.5E-05 8.6E-10 82.4 19.9 158 667-824 80-262 (293)
122 3qou_A Protein YBBN; thioredox 98.3 7.4E-06 2.5E-10 86.2 15.7 151 602-758 123-280 (287)
123 3dra_A Protein farnesyltransfe 98.3 7.2E-05 2.5E-09 78.4 22.2 226 575-808 47-302 (306)
124 2vyi_A SGTA protein; chaperone 98.3 3.7E-06 1.3E-10 75.8 10.5 118 662-816 12-131 (131)
125 2uy1_A Cleavage stimulation fa 98.3 0.00029 1E-08 79.8 28.5 333 443-792 28-411 (493)
126 2e2e_A Formate-dependent nitri 98.2 3.8E-06 1.3E-10 81.1 10.4 116 709-827 22-143 (177)
127 1na0_A Designed protein CTPR3; 98.2 8.8E-06 3E-10 72.6 12.0 116 662-813 9-125 (125)
128 2ifu_A Gamma-SNAP; membrane fu 98.2 2.1E-06 7.3E-11 91.4 9.0 197 608-826 3-222 (307)
129 2lni_A Stress-induced-phosphop 98.2 4.9E-06 1.7E-10 75.4 10.2 118 661-814 15-133 (133)
130 1p5q_A FKBP52, FK506-binding p 98.2 7.5E-06 2.6E-10 88.3 13.0 160 644-825 126-291 (336)
131 3rjv_A Putative SEL1 repeat pr 98.2 3E-05 1E-09 77.3 16.2 171 616-796 6-199 (212)
132 2vgx_A Chaperone SYCD; alterna 98.2 1.9E-06 6.5E-11 80.4 6.8 101 702-805 26-129 (148)
133 3upv_A Heat shock protein STI1 98.2 5.6E-06 1.9E-10 74.6 9.7 94 734-827 5-100 (126)
134 1a17_A Serine/threonine protei 98.2 8.7E-06 3E-10 77.2 11.3 127 662-825 13-143 (166)
135 4f3v_A ESX-1 secretion system 98.2 3.6E-06 1.2E-10 86.1 8.6 136 667-807 107-249 (282)
136 1hxi_A PEX5, peroxisome target 98.2 3.4E-06 1.2E-10 75.4 7.4 94 734-827 18-113 (121)
137 2kck_A TPR repeat; tetratricop 98.1 1.1E-05 3.8E-10 70.4 10.6 95 733-827 6-105 (112)
138 2fbn_A 70 kDa peptidylprolyl i 98.1 4.1E-06 1.4E-10 82.6 8.5 164 635-819 8-176 (198)
139 3gyz_A Chaperone protein IPGC; 98.1 5.4E-06 1.9E-10 77.2 8.7 118 633-759 11-130 (151)
140 1wao_1 Serine/threonine protei 98.1 6.3E-06 2.1E-10 93.5 10.6 114 707-823 16-134 (477)
141 3gw4_A Uncharacterized protein 98.1 2.9E-05 9.8E-10 76.5 14.2 116 643-758 4-132 (203)
142 3u3w_A Transcriptional activat 98.1 0.00016 5.5E-09 76.1 20.4 158 637-794 81-266 (293)
143 2e2e_A Formate-dependent nitri 98.1 7.8E-06 2.7E-10 78.8 9.3 126 675-805 23-155 (177)
144 2xcb_A PCRH, regulatory protei 98.1 6.6E-06 2.3E-10 76.0 7.9 74 735-808 54-129 (142)
145 1wao_1 Serine/threonine protei 98.1 5.9E-06 2E-10 93.7 8.8 119 634-757 9-134 (477)
146 4f3v_A ESX-1 secretion system 98.0 5.4E-06 1.8E-10 84.8 6.6 181 643-828 18-237 (282)
147 3dss_A Geranylgeranyl transfer 98.0 0.00039 1.3E-08 73.2 20.7 228 573-809 41-319 (331)
148 3gw4_A Uncharacterized protein 98.0 4.5E-05 1.5E-09 75.1 13.0 154 631-796 26-198 (203)
149 3rkv_A Putative peptidylprolyl 98.0 2.1E-05 7.1E-10 74.5 9.9 85 765-875 63-148 (162)
150 3q49_B STIP1 homology and U bo 98.0 1.9E-05 6.5E-10 72.1 9.3 95 733-827 9-105 (137)
151 2dba_A Smooth muscle cell asso 98.0 0.00011 3.9E-09 67.7 14.6 115 660-811 26-145 (148)
152 1elw_A TPR1-domain of HOP; HOP 98.0 3.9E-05 1.3E-09 67.4 10.8 111 662-809 4-116 (118)
153 1elw_A TPR1-domain of HOP; HOP 98.0 3.9E-05 1.3E-09 67.4 10.7 94 734-827 5-100 (118)
154 1a17_A Serine/threonine protei 98.0 3.3E-05 1.1E-09 73.0 10.9 121 633-758 15-142 (166)
155 2qfc_A PLCR protein; TPR, HTH, 98.0 7.9E-05 2.7E-09 78.5 14.9 160 635-794 79-266 (293)
156 3sz7_A HSC70 cochaperone (SGT) 98.0 1.9E-05 6.4E-10 75.0 8.8 89 736-824 14-104 (164)
157 2hr2_A Hypothetical protein; a 97.9 3.2E-05 1.1E-09 71.2 9.6 112 663-805 12-142 (159)
158 3q7a_A Farnesyltransferase alp 97.9 0.0002 6.8E-09 75.8 16.9 176 647-827 105-330 (349)
159 3sz7_A HSC70 cochaperone (SGT) 97.9 3.5E-05 1.2E-09 73.1 10.2 111 661-808 10-122 (164)
160 4gcn_A Protein STI-1; structur 97.9 1.7E-05 5.7E-10 71.6 7.3 89 736-824 11-108 (127)
161 3upv_A Heat shock protein STI1 97.9 3.7E-05 1.3E-09 69.0 9.5 112 662-809 4-122 (126)
162 2lni_A Stress-induced-phosphop 97.9 4E-05 1.4E-09 69.3 9.6 95 733-827 16-112 (133)
163 2dba_A Smooth muscle cell asso 97.9 9.1E-05 3.1E-09 68.4 12.2 95 733-827 28-127 (148)
164 2vyi_A SGTA protein; chaperone 97.9 9.9E-05 3.4E-09 66.2 11.6 115 630-749 11-130 (131)
165 1na0_A Designed protein CTPR3; 97.8 5.7E-05 2E-09 67.1 9.6 94 734-827 10-105 (125)
166 2xev_A YBGF; tetratricopeptide 97.8 3.8E-05 1.3E-09 69.2 8.4 90 738-827 7-104 (129)
167 1dce_A Protein (RAB geranylger 97.8 0.00027 9.3E-09 81.5 17.4 168 645-817 43-244 (567)
168 4gcn_A Protein STI-1; structur 97.8 7.6E-05 2.6E-09 67.2 10.1 91 663-758 9-108 (127)
169 2c2l_A CHIP, carboxy terminus 97.8 4.7E-05 1.6E-09 79.6 10.0 90 533-624 7-100 (281)
170 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 6.6E-05 2.3E-09 84.6 10.9 161 643-825 246-412 (457)
171 3q7a_A Farnesyltransferase alp 97.8 0.003 1E-07 66.8 22.5 229 571-807 64-345 (349)
172 2kck_A TPR repeat; tetratricop 97.7 0.00021 7.2E-09 61.9 11.4 95 630-726 5-106 (112)
173 3k9i_A BH0479 protein; putativ 97.7 1.8E-05 6.3E-10 70.1 4.3 81 745-825 2-87 (117)
174 3q49_B STIP1 homology and U bo 97.7 7.2E-05 2.5E-09 68.1 8.4 101 660-797 7-109 (137)
175 1hxi_A PEX5, peroxisome target 97.7 7.6E-05 2.6E-09 66.5 8.0 66 734-799 52-119 (121)
176 1p5q_A FKBP52, FK506-binding p 97.7 0.0001 3.4E-09 79.3 10.4 122 632-758 148-290 (336)
177 1elr_A TPR2A-domain of HOP; HO 97.7 0.00016 5.4E-09 64.8 9.8 93 735-827 6-107 (131)
178 2hr2_A Hypothetical protein; a 97.7 7.9E-05 2.7E-09 68.6 7.5 62 765-826 57-129 (159)
179 1ihg_A Cyclophilin 40; ppiase 97.7 0.0001 3.6E-09 80.2 9.8 137 662-820 223-362 (370)
180 3dss_A Geranylgeranyl transfer 97.7 0.0014 4.9E-08 68.9 18.0 208 613-826 47-302 (331)
181 2if4_A ATFKBP42; FKBP-like, al 97.7 7.4E-05 2.5E-09 80.4 8.4 146 662-827 179-327 (338)
182 2fbn_A 70 kDa peptidylprolyl i 97.6 0.00027 9.3E-09 69.3 11.4 92 736-827 41-150 (198)
183 3ro3_A PINS homolog, G-protein 97.6 0.00018 6.2E-09 67.3 9.5 61 664-724 11-76 (164)
184 1elr_A TPR2A-domain of HOP; HO 97.6 0.00011 3.9E-09 65.8 7.8 115 662-810 4-123 (131)
185 2l6j_A TPR repeat-containing p 97.6 7E-05 2.4E-09 65.2 5.9 88 733-820 4-99 (111)
186 4b4t_Q 26S proteasome regulato 97.6 0.00018 6.1E-09 80.6 10.8 159 664-822 57-239 (434)
187 2xev_A YBGF; tetratricopeptide 97.6 0.00046 1.6E-08 61.8 11.5 108 667-808 7-119 (129)
188 3ro3_A PINS homolog, G-protein 97.6 0.00019 6.5E-09 67.1 9.0 128 698-825 10-155 (164)
189 3lvg_A Clathrin heavy chain 1; 97.6 0.00013 4.4E-09 77.9 8.0 461 45-617 54-533 (624)
190 3k9i_A BH0479 protein; putativ 97.5 5.3E-05 1.8E-09 67.0 4.3 75 736-810 30-106 (117)
191 3rkv_A Putative peptidylprolyl 97.5 0.00031 1.1E-08 66.2 10.0 123 662-810 11-143 (162)
192 3n71_A Histone lysine methyltr 97.5 0.00015 5E-09 81.5 8.2 131 672-831 319-467 (490)
193 2if4_A ATFKBP42; FKBP-like, al 97.5 0.00015 5.3E-09 77.9 8.0 110 699-825 181-290 (338)
194 1na3_A Designed protein CTPR2; 97.4 0.00026 8.8E-09 58.8 7.2 81 733-813 9-91 (91)
195 1ihg_A Cyclophilin 40; ppiase 97.4 0.00036 1.2E-08 75.9 10.1 111 698-827 224-335 (370)
196 4b4t_Q 26S proteasome regulato 97.4 0.00081 2.8E-08 75.1 12.9 157 670-826 12-202 (434)
197 3ma5_A Tetratricopeptide repea 97.3 0.00059 2E-08 58.1 7.9 63 764-826 6-68 (100)
198 1kt0_A FKBP51, 51 kDa FK506-bi 97.3 0.0011 3.7E-08 74.6 12.3 63 765-827 317-379 (457)
199 3bee_A Putative YFRE protein; 97.3 0.0009 3.1E-08 55.9 8.4 68 762-829 3-73 (93)
200 2kat_A Uncharacterized protein 97.3 0.00046 1.6E-08 60.6 7.0 77 751-827 3-81 (115)
201 2l6j_A TPR repeat-containing p 97.1 0.00041 1.4E-08 60.1 5.1 94 661-759 3-104 (111)
202 1zu2_A Mitochondrial import re 97.1 0.00021 7.2E-09 65.6 3.2 84 744-827 13-119 (158)
203 3n71_A Histone lysine methyltr 97.0 0.00073 2.5E-08 75.9 7.2 92 765-874 351-450 (490)
204 3ly7_A Transcriptional activat 97.0 0.0092 3.1E-07 62.9 14.6 136 659-822 191-333 (372)
205 1zu2_A Mitochondrial import re 97.0 0.00048 1.6E-08 63.2 4.3 106 673-804 13-130 (158)
206 3qwp_A SET and MYND domain-con 97.0 0.00052 1.8E-08 75.9 5.3 91 765-873 329-427 (429)
207 3lvg_A Clathrin heavy chain 1; 96.8 0.0011 3.7E-08 71.0 5.9 427 147-626 53-510 (624)
208 1dce_A Protein (RAB geranylger 96.7 0.0079 2.7E-07 69.2 12.8 133 675-812 42-191 (567)
209 2kat_A Uncharacterized protein 96.6 0.0024 8E-08 55.9 5.7 63 661-725 18-81 (115)
210 3ma5_A Tetratricopeptide repea 96.6 0.0048 1.7E-07 52.3 7.4 63 661-725 6-69 (100)
211 3qww_A SET and MYND domain-con 96.6 0.0012 4.3E-08 72.7 4.5 85 765-867 340-432 (433)
212 1klx_A Cysteine rich protein B 96.5 0.0071 2.4E-07 54.9 8.5 111 675-794 8-126 (138)
213 3qww_A SET and MYND domain-con 96.3 0.012 4.2E-07 64.8 10.0 50 674-723 310-366 (433)
214 1na3_A Designed protein CTPR2; 96.2 0.011 3.8E-07 48.5 7.3 63 765-827 9-71 (91)
215 2kc7_A BFR218_protein; tetratr 96.2 0.012 4.1E-07 49.4 7.5 64 739-802 6-72 (99)
216 1klx_A Cysteine rich protein B 96.1 0.051 1.8E-06 49.1 11.9 108 610-725 9-125 (138)
217 3ly7_A Transcriptional activat 96.1 0.021 7.1E-07 60.2 10.2 70 790-868 268-339 (372)
218 3mkq_A Coatomer beta'-subunit; 96.1 0.099 3.4E-06 63.5 17.8 49 640-690 661-709 (814)
219 3qwp_A SET and MYND domain-con 96.0 0.024 8.2E-07 62.5 10.9 58 667-724 292-356 (429)
220 3mkq_A Coatomer beta'-subunit; 95.7 0.24 8.3E-06 60.0 19.1 129 499-656 633-761 (814)
221 1pc2_A Mitochondria fission pr 95.4 0.18 6.3E-06 45.5 12.2 94 679-805 15-111 (152)
222 2kc7_A BFR218_protein; tetratr 95.2 0.028 9.6E-07 47.0 5.8 56 772-827 7-63 (99)
223 3u64_A Protein TP_0956; tetrat 94.7 0.04 1.4E-06 55.6 6.1 87 749-835 179-276 (301)
224 1wy6_A Hypothetical protein ST 94.5 1.5 5.2E-05 38.1 14.3 141 672-831 17-157 (172)
225 2v5f_A Prolyl 4-hydroxylase su 94.3 0.13 4.4E-06 43.6 7.9 69 738-806 10-87 (104)
226 3mkq_B Coatomer subunit alpha; 94.3 0.6 2.1E-05 43.3 12.6 128 640-791 14-141 (177)
227 3bee_A Putative YFRE protein; 94.0 0.16 5.6E-06 41.9 7.6 68 731-798 4-76 (93)
228 1pc2_A Mitochondria fission pr 94.0 0.24 8.1E-06 44.8 9.0 90 763-878 30-124 (152)
229 3u64_A Protein TP_0956; tetrat 92.5 0.87 3E-05 46.0 11.4 111 644-759 134-266 (301)
230 1qsa_A Protein (soluble lytic 92.2 19 0.00066 41.1 24.2 262 531-806 73-356 (618)
231 4gns_B Protein CSD3, chitin bi 92.2 1 3.5E-05 52.6 13.3 52 774-825 346-397 (754)
232 3mkq_B Coatomer subunit alpha; 92.1 6.6 0.00022 36.4 16.0 105 537-658 12-116 (177)
233 1nzn_A CGI-135 protein, fissio 90.8 2.9 9.9E-05 36.3 11.4 94 679-805 18-114 (126)
234 2v5f_A Prolyl 4-hydroxylase su 88.0 1.1 3.7E-05 37.7 6.7 63 702-764 10-78 (104)
235 1y8m_A FIS1; mitochondria, unk 83.8 14 0.00049 32.5 11.6 73 730-802 36-114 (144)
236 1wy6_A Hypothetical protein ST 83.2 23 0.00078 30.9 13.4 136 471-627 18-156 (172)
237 1v54_E Cytochrome C oxidase po 82.7 8 0.00027 31.7 8.6 68 752-831 32-99 (109)
238 3lpz_A GET4 (YOR164C homolog); 82.4 48 0.0017 34.2 20.2 92 484-575 83-181 (336)
239 4gns_B Protein CSD3, chitin bi 80.9 8.2 0.00028 45.1 11.7 52 670-723 345-397 (754)
240 1y8m_A FIS1; mitochondria, unk 79.6 21 0.00072 31.5 11.1 69 694-765 36-110 (144)
241 4h7y_A Dual specificity protei 79.4 12 0.0004 33.4 9.4 97 456-554 9-118 (161)
242 2ff4_A Probable regulatory pro 79.0 7 0.00024 42.0 9.9 69 665-735 174-247 (388)
243 4b4t_P 26S proteasome regulato 78.7 79 0.0027 34.4 19.2 96 664-759 139-244 (445)
244 1nzn_A CGI-135 protein, fissio 76.9 36 0.0012 29.4 12.3 89 606-697 11-107 (126)
245 2p58_C Putative type III secre 76.0 21 0.00072 29.1 9.0 85 612-701 23-107 (116)
246 2uwj_G Type III export protein 75.1 20 0.00068 29.2 8.6 85 612-701 22-106 (115)
247 4h7y_A Dual specificity protei 74.8 20 0.00068 32.0 9.5 63 473-536 73-135 (161)
248 1v54_E Cytochrome C oxidase po 74.1 15 0.00052 30.0 7.9 63 677-741 25-87 (109)
249 3lpz_A GET4 (YOR164C homolog); 74.1 85 0.0029 32.4 20.5 134 252-396 38-182 (336)
250 4ady_A RPN2, 26S proteasome re 73.7 1.6E+02 0.0053 35.3 31.4 248 443-699 388-663 (963)
251 3ffl_A Anaphase-promoting comp 73.6 11 0.00038 34.3 7.9 26 738-763 127-152 (167)
252 3o48_A Mitochondria fission 1 73.4 40 0.0014 29.3 11.0 37 769-805 82-118 (134)
253 1wdy_A 2-5A-dependent ribonucl 72.9 65 0.0022 31.9 15.2 85 327-416 191-281 (285)
254 2y69_E Cytochrome C oxidase su 72.8 20 0.00067 31.2 8.6 69 751-831 74-142 (152)
255 2p58_C Putative type III secre 71.7 14 0.00049 30.0 7.1 77 230-310 23-99 (116)
256 3o48_A Mitochondria fission 1 71.0 15 0.00052 32.0 7.8 66 762-827 37-106 (134)
257 2wpv_A GET4, UPF0363 protein Y 70.9 97 0.0033 31.6 20.1 92 483-574 80-178 (312)
258 4b4t_P 26S proteasome regulato 70.8 85 0.0029 34.1 16.1 26 464-489 141-166 (445)
259 3mv2_A Coatomer subunit alpha; 70.8 19 0.00066 36.6 9.8 50 748-797 185-239 (325)
260 2uwj_G Type III export protein 70.7 13 0.00046 30.1 6.7 77 230-310 22-98 (115)
261 4fhn_B Nucleoporin NUP120; pro 69.9 23 0.00079 44.2 12.7 193 601-821 817-1042(1139)
262 1zbp_A Hypothetical protein VP 69.2 23 0.00077 35.2 9.6 120 671-801 6-136 (273)
263 3txn_A 26S proteasome regulato 69.2 67 0.0023 34.1 14.2 23 668-690 105-127 (394)
264 2wpv_A GET4, UPF0363 protein Y 68.3 1.1E+02 0.0037 31.2 20.1 167 534-726 37-217 (312)
265 4ady_A RPN2, 26S proteasome re 67.7 2.1E+02 0.0071 34.2 28.2 114 675-792 503-621 (963)
266 2l0z_A Glycoprotein G2; zinc-b 67.2 1.8 6.1E-05 28.1 0.9 13 955-967 16-29 (42)
267 1n11_A Ankyrin; clathrin, BAND 65.0 1.5E+02 0.0052 31.7 18.1 149 255-417 215-373 (437)
268 1k1a_A B-cell lymphoma 3-encod 64.5 76 0.0026 30.5 13.2 57 355-416 152-211 (241)
269 4fhn_B Nucleoporin NUP120; pro 63.6 80 0.0027 39.3 15.7 62 766-827 900-966 (1139)
270 2qx5_A Nucleoporin NIC96; mRNA 63.4 93 0.0032 35.6 14.7 41 285-326 157-197 (661)
271 2y69_E Cytochrome C oxidase su 61.0 35 0.0012 29.6 7.9 62 678-741 69-130 (152)
272 2ff4_A Probable regulatory pro 59.7 15 0.0005 39.5 7.1 64 769-832 175-243 (388)
273 1zbp_A Hypothetical protein VP 59.4 37 0.0012 33.7 9.0 111 705-828 5-129 (273)
274 2qx5_A Nucleoporin NIC96; mRNA 58.1 2E+02 0.0067 32.9 16.2 80 466-556 300-382 (661)
275 3ffl_A Anaphase-promoting comp 52.8 93 0.0032 28.2 9.8 52 537-588 27-90 (167)
276 1qc6_A EVH1 domain from ENA/VA 50.6 4.9 0.00017 35.2 1.1 40 916-963 44-87 (130)
277 3mkr_B Coatomer subunit alpha; 50.3 28 0.00094 35.5 6.6 42 756-797 187-230 (320)
278 1qsa_A Protein (soluble lytic 49.5 3.3E+02 0.011 30.8 35.2 351 252-688 75-439 (618)
279 1k1a_A B-cell lymphoma 3-encod 48.4 1.9E+02 0.0063 27.5 13.5 27 468-494 14-40 (241)
280 3kea_A K1L; tropism, ANK repea 47.3 1.8E+02 0.006 29.0 12.7 225 133-375 13-243 (285)
281 3eu9_A Huntingtin-interacting 47.2 1.7E+02 0.0059 27.6 12.4 16 259-274 116-131 (240)
282 3twe_A Alpha4H; unknown functi 46.9 21 0.00071 19.9 2.8 18 858-875 3-20 (27)
283 1n11_A Ankyrin; clathrin, BAND 44.4 3.1E+02 0.011 29.1 16.9 330 17-380 18-371 (437)
284 2lo3_A SAGA-associated factor 42.5 5.3 0.00018 26.2 0.0 9 924-932 16-24 (44)
285 3esl_A Checkpoint serine/threo 40.1 2.4E+02 0.0082 26.5 11.4 92 765-882 80-173 (202)
286 1wdy_A 2-5A-dependent ribonucl 39.1 2.8E+02 0.0096 26.9 18.4 46 509-554 193-240 (285)
287 3ljn_A Hypothetical protein; a 39.1 2E+02 0.007 29.7 12.1 55 155-210 57-112 (364)
288 3hra_A Ankyrin repeat family p 38.7 2.1E+02 0.0073 26.1 11.2 180 256-441 9-200 (201)
289 4b4t_R RPN7, 26S proteasome re 38.1 67 0.0023 34.7 8.1 96 633-728 133-239 (429)
290 3jxi_A Vanilloid receptor-rela 37.2 1.7E+02 0.0059 28.3 10.6 92 467-558 9-118 (260)
291 3mzk_B Protein transport prote 36.2 4.3E+02 0.015 28.3 13.7 101 699-799 280-393 (441)
292 3jxi_A Vanilloid receptor-rela 36.1 82 0.0028 30.8 7.9 87 190-276 13-117 (260)
293 3eiq_C Programmed cell death p 35.5 4E+02 0.014 27.7 15.1 264 464-763 58-340 (358)
294 4b4t_R RPN7, 26S proteasome re 35.3 1E+02 0.0036 33.2 9.0 96 664-759 133-234 (429)
295 2hgo_A CASSIICOLIN; toxin, dis 35.1 7.1 0.00024 21.9 -0.2 13 956-968 8-22 (27)
296 3kae_A CDC27, possible protein 34.2 2.3E+02 0.008 25.7 9.1 79 642-722 44-139 (242)
297 1j0t_A MIH, MOLT-inhibiting ho 33.5 6.3 0.00021 30.5 -0.8 13 923-935 20-32 (78)
298 3ltj_A Alpharep-4; protein eng 32.6 2.9E+02 0.01 25.3 18.3 60 629-689 119-178 (201)
299 2k0q_A Putative uncharacterize 31.3 15 0.00051 27.4 0.8 20 944-963 8-27 (74)
300 3ltm_A Alpha-REP4; protein eng 31.3 3.2E+02 0.011 25.3 18.5 62 628-690 123-184 (211)
301 2nsz_A Programmed cell death p 29.8 1.3E+02 0.0044 26.0 6.9 62 534-595 11-77 (129)
302 2rfa_A Transient receptor pote 29.2 3.6E+02 0.012 25.2 12.1 61 354-415 122-185 (232)
303 2zu6_B Programmed cell death p 27.8 4.1E+02 0.014 26.9 11.3 25 564-588 169-193 (307)
304 3txn_A 26S proteasome regulato 27.5 5.6E+02 0.019 26.9 23.4 211 602-829 105-344 (394)
305 3ltj_A Alpharep-4; protein eng 27.3 3.6E+02 0.012 24.6 17.7 147 254-409 33-179 (201)
306 3ljn_A Hypothetical protein; a 25.3 5.6E+02 0.019 26.1 14.6 20 356-375 23-42 (364)
307 2r9g_A AAA ATPase, central reg 25.1 3.4E+02 0.012 25.4 8.9 65 563-628 13-85 (204)
308 4b4t_S RPN3, 26S proteasome re 24.8 2.2E+02 0.0074 31.4 8.9 119 631-758 231-366 (523)
309 3syn_E ATP-binding protein YLX 24.1 33 0.0011 18.4 1.2 17 812-828 3-19 (23)
310 3ebh_A PFA-M1, M1 family amino 22.8 1.8E+02 0.0062 34.6 8.6 120 696-820 730-859 (889)
311 2ion_A PDCD4, programmed cell 22.6 1.2E+02 0.0042 27.0 5.5 62 534-595 13-79 (152)
312 2pk8_A Uncharacterized protein 22.2 75 0.0026 25.2 3.3 26 858-883 15-40 (103)
313 2d2s_A Exocyst complex compone 22.1 3.4E+02 0.012 26.2 9.1 22 568-589 25-46 (235)
314 3ltm_A Alpha-REP4; protein eng 21.0 4.9E+02 0.017 23.9 17.4 92 313-409 93-184 (211)
315 2dl1_A Spartin; SPG20, MIT, st 20.2 1.3E+02 0.0043 25.4 4.5 48 746-827 35-82 (116)
316 3eu9_A Huntingtin-interacting 20.1 5.3E+02 0.018 23.9 14.0 49 325-377 16-66 (240)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-40 Score=391.09 Aligned_cols=499 Identities=11% Similarity=-0.004 Sum_probs=368.0
Q ss_pred HhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHH
Q 040643 258 LYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQL 337 (968)
Q Consensus 258 ~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~ 337 (968)
.+.+.|.+..+...|+.++.+++..|+.++..|.+.|++++|+.+|++|.. ..||..++..+..+|...|++++|.++
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 356678888899999999999999999999999999999999999999984 568889999999999999999999999
Q ss_pred HHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 040643 338 HSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY 417 (968)
Q Consensus 338 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 417 (968)
+..+... +++..+++.++.+|.++|++++|.++|+++...+... .++.+.+.. .
T Consensus 140 ~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~~~---------------~---- 193 (597)
T 2xpi_A 140 LTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDE-----KNANKLLMQ---------------D---- 193 (597)
T ss_dssp HHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC---------------CC---------------C----
T ss_pred HHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccc-----ccccccccc---------------c----
Confidence 9987644 6788999999999999999999999999644332100 000000000 0
Q ss_pred chhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhh
Q 040643 418 TYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIG 497 (968)
Q Consensus 418 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 497 (968)
...+.+..+|+.++.+|.+.|++++|+++|++|.+. .|+..+
T Consensus 194 ------------------------------------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~ 235 (597)
T 2xpi_A 194 ------------------------------------GGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV--DAKCYE 235 (597)
T ss_dssp ------------------------------------SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred ------------------------------------cccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CchhhH
Confidence 000113345566666666666666666666666553 233222
Q ss_pred -HHHHHHHhhcccch--hhhhhh-hHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcccHHHHHHHH
Q 040643 498 -FSSAISACAGIQAL--NQGRQI-HAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA--KDNISWNGLISGF 571 (968)
Q Consensus 498 -~~~ll~a~~~~~~~--~~a~~i-~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~ 571 (968)
+..+...+...+.. +....+ +..+...+......+++.++.+|.++|++++|.++|+++.. ++..+|+.++.+|
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 315 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTL 315 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHH
Confidence 22222222211111 111122 34444445555566677778888888999999999988877 6888899999999
Q ss_pred HhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHH
Q 040643 572 AQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAK 651 (968)
Q Consensus 572 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~ 651 (968)
.+.|++++|+++|++|.+.+ ..+..++..++.++.+.|+.++|..++..+.+.. +.+..+++.++.+|.++|++++|.
T Consensus 316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 393 (597)
T 2xpi_A 316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR 393 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999988764 2366788888888899999999999998888653 557888888999999999999999
Q ss_pred HHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 652 REFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 652 ~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+ ..| +..++..++.+|.+.|++++|.++|++|.+..
T Consensus 394 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 394 RYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9998875 34678999999999999999999999999988 445 57788899999999999999999999887542
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 728 GLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 728 ~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
+.+...|.+++++|.+.|++++|.++++++ +..|+ ..+|..+..+|..+|+++.|+..++++++++|++
T Consensus 472 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 549 (597)
T 2xpi_A 472 --QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND 549 (597)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC
T ss_pred --CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC
Confidence 234778999999999999999999998887 55787 7889999999999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 799 SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+..|..|+++|...|+|++|.+..+.+.+.
T Consensus 550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 550 ANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999887776553
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.3e-37 Score=368.96 Aligned_cols=461 Identities=9% Similarity=0.026 Sum_probs=366.7
Q ss_pred HcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHH
Q 040643 291 AQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAY 370 (968)
Q Consensus 291 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~ 370 (968)
...|....+...+..+. .++...|+.++..+.+.|++++|..++..+.+. .|+..++..++.+|.+.|++++|.
T Consensus 64 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~ 137 (597)
T 2xpi_A 64 STDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK 137 (597)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence 34555555666655543 357788999999999999999999999999865 467788899999999999999999
Q ss_pred HHHhhC--CCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHH
Q 040643 371 KFFLTT--ETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTA 448 (968)
Q Consensus 371 ~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a 448 (968)
.+|+.+ ..++..+|+.++.+|.+.|++++|+++|+++ .|+... .
T Consensus 138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~----~------------------------- 183 (597)
T 2xpi_A 138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET-----NPFRKD----E------------------------- 183 (597)
T ss_dssp HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS-----CTTC--------------------------------
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc-----CCcccc----c-------------------------
Confidence 999998 4678899999999999999999999998852 121100 0
Q ss_pred HHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCC
Q 040643 449 QEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSD 528 (968)
Q Consensus 449 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 528 (968)
.++.+.+ -...|..++..++..+..++.+.|++++|.+.+..+.+.+..
T Consensus 184 -------------------~~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~- 232 (597)
T 2xpi_A 184 -------------------KNANKLL-----------MQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK- 232 (597)
T ss_dssp -------------------------------------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -------------------ccccccc-----------ccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-
Confidence 0000111 122356678899999999999999999999999999987643
Q ss_pred CchhhhhHHHHHHHcCCHHHHHH--H-HHhCCCC----CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHH
Q 040643 529 DLSIGNALISLYARCGRIQEAYL--V-FNKIDAK----DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGS 601 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~--~-f~~m~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 601 (968)
+...+..+...+...+..+.+.. + |..+... ...+|+.++..|.+.|++++|.++|++|.+. .++..++..
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~ 310 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLC 310 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHH
Confidence 44555556555543333222211 1 3333322 3346777789999999999999999999876 588999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA 678 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~ 678 (968)
+..++.+.|++++|..++..+.+.+ +.+..+++.++..|.+.|++++|.++|+++. ..+..+|+.++..|.+.|+.
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 9999999999999999999999876 4478889999999999999999999999876 45789999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTE 757 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~ 757 (968)
++|+++|+++.+ +.|+ ..++..++.++.+.|++++|.++|+.|.+. .+++...|..++.+|.+.|++++|.++++
T Consensus 390 ~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 465 (597)
T 2xpi_A 390 SEARRYFSKSST--MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQ 465 (597)
T ss_dssp HHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998 5675 669999999999999999999999999653 23468889999999999999999999999
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc------CCCC-cchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 758 QM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL------EPED-SATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 758 ~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~p~~-~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
++ ...| +..+|..+...+...|+++.|...+++++++ +|++ ...|..++++|...|++++|.++.+.+.+.
T Consensus 466 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLL 545 (597)
T ss_dssp HHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 98 3334 5899999999999999999999999999998 5654 678999999999999999999988877665
Q ss_pred C
Q 040643 829 G 829 (968)
Q Consensus 829 g 829 (968)
+
T Consensus 546 ~ 546 (597)
T 2xpi_A 546 S 546 (597)
T ss_dssp S
T ss_pred C
Confidence 4
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.8e-26 Score=261.34 Aligned_cols=184 Identities=12% Similarity=0.158 Sum_probs=174.0
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh---------hHHHHHHHHHHHHHhCCCCChh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA---------NIKQGKQVHAMIIKTGYDSETE 632 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~---------~~~~a~~~~~~~~~~g~~~~~~ 632 (968)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 3578899999999999999999999999999999999999999998654 5889999999999999999999
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP----EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 708 (968)
+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+.|+.||.+||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 68999999999999999999999999999999999999999999999999
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhc
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRA 746 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~ 746 (968)
+.|++++|.++|++|++ .|+.|+..+|+.+++.+.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999965 49999999999999998764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.93 E-value=1.5e-25 Score=255.32 Aligned_cols=184 Identities=14% Similarity=0.079 Sum_probs=171.4
Q ss_pred ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCc---------hHHHHHHHHHHHHhcCCCchh
Q 040643 180 VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIEL---------FEIGEQFHGLIFKWGFSSETF 250 (968)
Q Consensus 180 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~g~~~~~~ 250 (968)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|+..+. ++.|.++|..|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35888999999999999999999999999999999999999999986543 678999999999999999999
Q ss_pred HHHHHHHHhhccCChhHHHHHHhhCC----CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHh
Q 040643 251 VCNALVTLYSRSGNLTSAEQIFSKMQ----QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACA 326 (968)
Q Consensus 251 ~~~~Li~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 326 (968)
+||+||.+|++.|++++|.++|++|. .||+++||+||.+|++.|+.++|.++|++|.+.|+.||..||+++|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 47999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhc
Q 040643 327 SVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKC 363 (968)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~ 363 (968)
+.|++++|.++++.|.+.|..|+..+++.|+..|...
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988754
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=2e-22 Score=225.68 Aligned_cols=373 Identities=11% Similarity=0.065 Sum_probs=260.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHH
Q 040643 388 LVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMI 467 (968)
Q Consensus 388 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li 467 (968)
...+.+.|++++|++.+.++.+. .|+... .+..+.
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~-------------------------------------------~~~~l~ 40 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTG-------------------------------------------VLLLLS 40 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHH-------------------------------------------HHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-------------------------------------------HHHHHH
Confidence 34566778888888888776654 243322 333344
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHH
Q 040643 468 VGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQ 547 (968)
Q Consensus 468 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~ 547 (968)
..+.+.|++++|...++...+. .+.+..++..+..++...|+++.|.+.+..+++..+ .+...+..+...|.+.|+++
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~ 118 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQ-NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDME 118 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSS
T ss_pred HHHHHcCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHH
Confidence 4444555555555555544442 122334444444455555555555555554444321 13344556666666666666
Q ss_pred HHHHHHHhCCC--C-CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC-cchHHHHHHHHhhhhhHHHHHHHHHHHH
Q 040643 548 EAYLVFNKIDA--K-DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN-LYTFGSVVSAAANLANIKQGKQVHAMII 623 (968)
Q Consensus 548 ~A~~~f~~m~~--~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 623 (968)
+|.+.|+++.. | +...|..+...|...|++++|++.|+++... .|+ ..++..+...+...|++++|...+..++
T Consensus 119 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 196 (388)
T 1w3b_A 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAV 196 (388)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665432 2 3345566666666677777777777776654 343 3456666666677777777777777776
Q ss_pred HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHH
Q 040643 624 KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVT 699 (968)
Q Consensus 624 ~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t 699 (968)
+.. +.+...+..+...|...|++++|...|++.. ..+..+|+.+...|...|++++|++.|+++.+ ..|+ ..+
T Consensus 197 ~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 273 (388)
T 1w3b_A 197 TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDA 273 (388)
T ss_dssp HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHH
T ss_pred hcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHH
Confidence 653 3356677788888888999999998888765 33678889999999999999999999999988 5675 557
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRV 777 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~ 777 (968)
+..+..++...|++++|.++|+.+.+. .+++...|..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+..
T Consensus 274 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 351 (388)
T 1w3b_A 274 YCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351 (388)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 888888999999999999999988654 2344778888999999999999999999887 55565 7788888888999
Q ss_pred cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 778 HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
.|+.+.|....+++++++|+++..|..++++|...|+
T Consensus 352 ~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 352 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999999999999998887764
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.91 E-value=7.8e-22 Score=220.85 Aligned_cols=350 Identities=17% Similarity=0.132 Sum_probs=303.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChh-hHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCC
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNI-GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGR 545 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 545 (968)
...+.+.|++++|++.++++.+. .|+.. .+..+...+...++++.+...+..+++.. +.+...+..+...|.+.|+
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 45667899999999999998875 46554 44555566788899999999998888765 3467889999999999999
Q ss_pred HHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhhhHHHHHHHHHH
Q 040643 546 IQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLANIKQGKQVHAM 621 (968)
Q Consensus 546 ~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~ 621 (968)
+++|...|+++. ..+..+|..+...|.+.|++++|++.|+++.+. .|+... +..+...+...|++++|...+..
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 999999999875 335567999999999999999999999999875 576654 44556677888999999999999
Q ss_pred HHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h
Q 040643 622 IIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-H 697 (968)
Q Consensus 622 ~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~ 697 (968)
+++.. +.+...++.+...|.+.|++++|.+.|+++. ..+...|..+...+...|++++|+..|++..+ +.|+ .
T Consensus 161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~ 237 (388)
T 1w3b_A 161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHA 237 (388)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCH
T ss_pred HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCH
Confidence 98864 4467889999999999999999999999876 34677899999999999999999999999998 6786 5
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIE-PDAMVWRTLLSA 774 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~-p~~~~~~~ll~~ 774 (968)
.++..+..++...|++++|.+.|+.+.+. .|+ ...|..++.++.+.|++++|.+.++++ ... ++..+|..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 68899999999999999999999998653 565 678999999999999999999999988 333 458899999999
Q ss_pred HHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 775 CRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+...|+++.|...+++++++.|+++..+..++.+|...|++++|.+..+.+.+
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998877754
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=1.2e-22 Score=232.32 Aligned_cols=346 Identities=13% Similarity=0.101 Sum_probs=253.4
Q ss_pred CCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHH
Q 040643 458 DDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALI 537 (968)
Q Consensus 458 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 537 (968)
.+...|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|+++.|.+.+..+++.+.. +..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence 356688999999999999999999999998752 223444444445555555555555555555444322 233444444
Q ss_pred HHHHHcCCHHHHHHHHHhCCCCC---c---ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhh
Q 040643 538 SLYARCGRIQEAYLVFNKIDAKD---N---ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLAN 611 (968)
Q Consensus 538 ~~y~k~g~~~~A~~~f~~m~~~d---~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~ 611 (968)
.+|.+.|++++|...|+++...+ . ..|..++..+...+ +..+...+...|+
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------------------~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-----------------------LRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHcCC
Confidence 44444444444444444433221 1 23333322211110 1112233566777
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 612 IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKM 688 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 688 (968)
+++|...+..+.+.. +.+..++..++.+|.++|++++|.+.|+++. ..+..+|+.++..|...|++++|++.|+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 237 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 888888887777653 4567888999999999999999999999876 457899999999999999999999999999
Q ss_pred HHCCCCCChHH-HHHH------------HHHHcccCcHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHHhhcCChH
Q 040643 689 KKHDVMPNHVT-FVGV------------LSACSHVGLVNEGLRYFESMSTEYGLVPK-----PEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 689 ~~~g~~Pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~G~~~ 750 (968)
.+ ..|+..+ +..+ ..+|.+.|++++|..+|+.+.+. .|+ ..+|.++++++.+.|+++
T Consensus 238 ~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 238 LK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 98 6787654 3333 78899999999999999999764 455 458999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH------------HHHhhcC--C
Q 040643 751 RAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS------------NIYAAAG--K 814 (968)
Q Consensus 751 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~------------~~y~~~g--~ 814 (968)
+|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++|+++..+..|+ +.|...| +
T Consensus 313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 999999997 5566 4899999999999999999999999999999999999999999 6788888 5
Q ss_pred cchHHHHHHHHHhCCCccCC
Q 040643 815 WDCRDQIRQIMKDRGVKKEP 834 (968)
Q Consensus 815 ~~~a~~~~~~m~~~g~~k~~ 834 (968)
|.+..++++.+++..++..|
T Consensus 393 ~~~~~~~~~~y~~~~l~~~p 412 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHP 412 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCG
T ss_pred cCCHHHHHHHHHHHHHHhCC
Confidence 55556677777665555555
No 8
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.88 E-value=7.2e-17 Score=192.91 Aligned_cols=726 Identities=12% Similarity=0.128 Sum_probs=455.6
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhCCCCCcccchhhHHhhhhCCCcchHHHhhhccCC--CCccchHHHHHHHHhcCChh
Q 040643 16 LLEGCLSYGSLLEAKKIHGKILKLGFDGEQVLCDKFFNIYLTSGDLDSAMKIFDDMSK--RTVFSWNKLISGFVAKKLSG 93 (968)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~ 93 (968)
++.+++..|.++..... ..+.|..|| |..|++.+.+. +++.|..+-..+.. +.....+.++..+...+..+
T Consensus 488 vi~~l~~~gq~~ki~~Y---~~~~~~~pD---y~~ll~~~~~~-~P~~~~~fa~~L~~~~~p~~d~~~ivd~f~~~~~iq 560 (1630)
T 1xi4_A 488 VIQCFAETGQVQKIVLY---AKKVGYTPD---WIFLLRNVMRI-SPDQGQQFAQMLVQDEEPLADITQIVDVFMEYNLIQ 560 (1630)
T ss_pred HHHHHHHhCCHHHHHHH---HhccCCCcc---HHHHHHHHhhc-ChHHHHHHHHHHhcCCCCccCHHHHHHHHHhcCcHH
Confidence 34444445554443333 223455555 34455554432 35555444443322 23456677777777778888
Q ss_pred hHHHHHHHhHhCCCCCCcccH-HHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHh
Q 040643 94 RVLGLFLQMIDDDVIPNEATF-VGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFN 172 (968)
Q Consensus 94 ~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 172 (968)
++..++.+..+.+ .|..... +.+|..- +. .+.++-+.+...+.- +-+-+..+...+-+.|-+..|.+.++
T Consensus 561 ~~t~fLld~lk~n-~~e~~~LQTrlle~N-----l~--~~pqvadail~~~~f-thyd~~~IA~LCE~aGl~qrale~y~ 631 (1630)
T 1xi4_A 561 QCTAFLLDALKNN-RPSEGPLQTRLLEMN-----LM--HAPQVADAILGNQMF-THYDRAHIAQLCEKAGLLQRALEHFT 631 (1630)
T ss_pred HHHHHHHHHHhCC-ChhhhhHhHHHHHHh-----hc--cchhHHHHHHhcCcc-ccccHHHHHHHHHHcCcHHHHHHhcC
Confidence 8777776666543 3322222 2222211 11 345666666666544 55667888888999999999999988
Q ss_pred hCC-------CCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhH-------------HHHHHhhcccCchHH
Q 040643 173 NLC-------FKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAI-------------SSALSACTKIELFEI 232 (968)
Q Consensus 173 ~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-------------~~ll~~~~~~~~~~~ 232 (968)
.+. ..+...=.-++ .|...=..+.+++.+++|...+++-|.... ..++..+-+.+.++.
T Consensus 632 d~~dikR~~~~~~~~~~~~l~-~~fg~l~~~~s~~~l~~~l~~n~~qnlq~vvqva~ky~~~lg~~~li~~fe~~~~~eg 710 (1630)
T 1xi4_A 632 DLYDIKRAVVHTHLLNPEWLV-NYFGSLSVEDSLECLRAMLSANIRQNLQICVQVASKYHEQLSTQSLIELFESFKSFEG 710 (1630)
T ss_pred CHHHHHHHhhccCcCCHHHHH-HHHhcCCHHHHHHHHHHHHHHhHhhhhhhhhhHHHHHHhhcCHHHHHHHHHHhcchhh
Confidence 651 11111112233 344446779999999999876554432222 222222222222222
Q ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC---------------CCCc---------cc------
Q 040643 233 GEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ---------------QRDG---------VT------ 282 (968)
Q Consensus 233 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---------------~~~~---------~~------ 282 (968)
.--+++.++ .+..|+.+....|.+.++.|++.+.+++..+-. -+|. .-
T Consensus 711 l~y~l~siv--~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~ 788 (1630)
T 1xi4_A 711 LFYFLGSIV--NFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLV 788 (1630)
T ss_pred HHHHHHhhc--cccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHH
Confidence 222222222 256789999999999999999999888876532 1111 10
Q ss_pred -------HHHHHHHHHcCCChhHHHHHHHHhhccccC-----------CCcccHHHHHHHHhccCChHHHHHHHHHHHHh
Q 040643 283 -------YNSLISGLAQCGYSDKALELFEKMQLDCLK-----------PDCVTVASLVSACASVGAFRTGEQLHSYAIKV 344 (968)
Q Consensus 283 -------~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-----------p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 344 (968)
....|..|.+.-++..+-.+...+...+.. .+.....-|+..+-+.+++......++.-+..
T Consensus 789 ~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~ 868 (1630)
T 1xi4_A 789 LYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHE 868 (1630)
T ss_pred HHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 122344444443333333333222221111 11122333444444445555555556666666
Q ss_pred CCCCChhhHhHHHHHHHhcCCh-hH------------------------HHHHHhhC-----------------------
Q 040643 345 GISKDIIVEGSMLDLYVKCSDV-ET------------------------AYKFFLTT----------------------- 376 (968)
Q Consensus 345 g~~~~~~~~~~Li~~y~~~g~~-~~------------------------A~~~f~~~----------------------- 376 (968)
| ..++.++|+|...|...++- +. |.-.+++-
T Consensus 869 g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~aryl 947 (1630)
T 1xi4_A 869 G-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYL 947 (1630)
T ss_pred C-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHH
Confidence 6 66788889988888755321 11 11111100
Q ss_pred -CCCCcchH--------------------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCccchhh
Q 040643 377 -ETENVVLW--------------------------------NVMLVAYGQLNDLSESFQIFKQMQTEGL--TPNQYTYPT 421 (968)
Q Consensus 377 -~~~~~~~~--------------------------------~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ 421 (968)
.+.|...| ...+.+|...|.+.+|++++++....+- .-+...-+.
T Consensus 948 v~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~Lqnl 1027 (1630)
T 1xi4_A 948 VRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNL 1027 (1630)
T ss_pred HHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHH
Confidence 00122222 2344567777778888888877773311 000111111
Q ss_pred hhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHH
Q 040643 422 ILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSA 501 (968)
Q Consensus 422 ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 501 (968)
++.+..+. +...+.+....+ +......+...+...|.+++|..+|++... .......+
T Consensus 1028 Li~tAIka-D~~Rv~eyI~kL----------------d~~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VL 1085 (1630)
T 1xi4_A 1028 LILTAIKA-DRTRVMEYINRL----------------DNYDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVL 1085 (1630)
T ss_pred HHHHHHHh-ChhhHHHHHHHh----------------hhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHH
Confidence 22222221 222222222111 111234577888899999999999999521 11112222
Q ss_pred HHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHH
Q 040643 502 ISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGAL 581 (968)
Q Consensus 502 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~ 581 (968)
+. ..+++++|.++...+ .++.+|..+..++.+.|++++|...|.+. .|...|..++..+.+.|++++|+
T Consensus 1086 ie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAI 1154 (1630)
T 1xi4_A 1086 IE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELV 1154 (1630)
T ss_pred HH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHH
Confidence 22 667888888887754 35788999999999999999999999764 67788899999999999999999
Q ss_pred HHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCC
Q 040643 582 QVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKN 661 (968)
Q Consensus 582 ~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d 661 (968)
+.+...++.. ++....+.+..++++.++++....+. + .++...+..+.+.|...|++++|...|...
T Consensus 1155 eyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1155 KYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 9998877654 44444445888999998888644442 2 345566677999999999999999999996
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
..|..+...|.+.|++++|++.+++. -|..+|.-+..+|...|.+..|..+.. ++.-.++.+..++.
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl------~Iiv~~deLeeli~ 1288 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGL------HIVVHADELEELIN 1288 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHH------hhhcCHHHHHHHHH
Confidence 48999999999999999999999976 356889999999999999999988765 34556778889999
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh--cCChhHHHHHHHHHHccCC-----CCcchHHHHHHHHhhc
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRV--HKNMEIGEYAANHLLELEP-----EDSATYVLLSNIYAAA 812 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~ 812 (968)
.|.+.|.++||..+++.. .++|. ...|.-|...+.+ -+++..+.+.+..-+.+.| ++...|.-+.-+|.+.
T Consensus 1289 yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1289 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999876 66665 5666555555444 3466777777777777777 7888999999999999
Q ss_pred CCcchHHH
Q 040643 813 GKWDCRDQ 820 (968)
Q Consensus 813 g~~~~a~~ 820 (968)
|+|+.|..
T Consensus 1369 ~e~dnA~~ 1376 (1630)
T 1xi4_A 1369 EEYDNAII 1376 (1630)
T ss_pred ccHHHHHH
Confidence 99999985
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.6e-20 Score=216.82 Aligned_cols=457 Identities=10% Similarity=-0.011 Sum_probs=265.8
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHH
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYV 361 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 361 (968)
.|......+.+.|++++|+..|+++.... ||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|.
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 34455566667777777777777776653 566667777777777777777777777777664 344566677777777
Q ss_pred hcCChhHHHHHHhhCCC---CCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHH
Q 040643 362 KCSDVETAYKFFLTTET---ENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQI 438 (968)
Q Consensus 362 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~ 438 (968)
+.|++++|...|+++.. .+......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 77777777777766432 233334444444444433444444443333333223222221111100000011101011
Q ss_pred HHhhCChHHHHHHHhhCC-CCCceeHHHHHHHHHh---cCChhHHHHHHHHHHh-----cCCCCChhhHHHHHHHhhccc
Q 040643 439 HTQLGNLNTAQEILRRLP-EDDVVSWTAMIVGFVQ---HGMFGEALELFEEMEN-----QGIQSDNIGFSSAISACAGIQ 509 (968)
Q Consensus 439 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ll~a~~~~~ 509 (968)
....+.+..+... .... +.+...|......+.. .|++++|+.+|+++.+ ....|+.....
T Consensus 165 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~---------- 233 (514)
T 2gw1_A 165 ASFFGIFKPELTF-ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK---------- 233 (514)
T ss_dssp HHHHTTSCCCCCC-SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH----------
T ss_pred HHHHhhcCHHHHH-HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC----------
Confidence 1001100000000 0000 1123334444444443 7788888888887766 22233221000
Q ss_pred chhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCC--CCCcccHHHHHHHHHhcCChhhHHHHHHHh
Q 040643 510 ALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKID--AKDNISWNGLISGFAQSGYCEGALQVFSQM 587 (968)
Q Consensus 510 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~--~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 587 (968)
+.+..++..+...|...|++++|...|+++. .++...|..+...|...|++++|+..|+++
T Consensus 234 -----------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 296 (514)
T 2gw1_A 234 -----------------EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKA 296 (514)
T ss_dssp -----------------HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 1123344556666666666666666666542 122445566666666666666666666665
Q ss_pred hhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHH
Q 040643 588 TQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVS 664 (968)
Q Consensus 588 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~ 664 (968)
.... +.+..++..+...|.+.|++++|...|+++. ..+...
T Consensus 297 ~~~~------------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 340 (514)
T 2gw1_A 297 LKLD------------------------------------SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFP 340 (514)
T ss_dssp HTTC------------------------------------TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHH
T ss_pred hhcC------------------------------------cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHH
Confidence 5431 2234455666777777788888877777653 335677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHH
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACV 739 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~l 739 (968)
|..+...|...|++++|+..|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+...-.|. ...|..+
T Consensus 341 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 418 (514)
T 2gw1_A 341 YIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGK 418 (514)
T ss_dssp HHHHHHHTTTTTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHH
Confidence 88888888888888888888888887 4554 557777888888888888888888877654322222 3378888
Q ss_pred HHHHhh---cCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 740 VDLLGR---AGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 740 v~~l~r---~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
+.++.+ .|++++|.+.++++ ...|+ ..+|..+...+...|+.+.|...++++++++|+++..+..+..
T Consensus 419 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 419 ATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 888888 88899988888876 34454 7778888888899999999999999999999988887776643
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.9e-20 Score=213.86 Aligned_cols=422 Identities=9% Similarity=-0.005 Sum_probs=296.3
Q ss_pred HhHHHHHHHhcCChhHHHHHHhhCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCC
Q 040643 353 EGSMLDLYVKCSDVETAYKFFLTTE--TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLG 430 (968)
Q Consensus 353 ~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 430 (968)
+..+...|.+.|++++|...|+++. .|+...|..+..+|.+.|++++|+..|+++.+..
T Consensus 9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------------- 69 (514)
T 2gw1_A 9 LKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK------------------- 69 (514)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------------------
Confidence 3344455666667777776666654 2566667777777777777777777777665432
Q ss_pred chhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccc
Q 040643 431 ALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQA 510 (968)
Q Consensus 431 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 510 (968)
+.+...|..+...|.+.|++++|+..|+++...+ +++......++..+.....
T Consensus 70 --------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 122 (514)
T 2gw1_A 70 --------------------------PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQA 122 (514)
T ss_dssp --------------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHH
Confidence 1234467777788888888888888888887754 2344444444444444333
Q ss_pred hhhhhhhhHhhhhhcCCCCchhhhh---HHHHHHHcCCHHHHHHHHHhCCC---------C-CcccHHHHHHHHHh---c
Q 040643 511 LNQGRQIHAQSYISGFSDDLSIGNA---LISLYARCGRIQEAYLVFNKIDA---------K-DNISWNGLISGFAQ---S 574 (968)
Q Consensus 511 ~~~a~~i~~~~~~~g~~~~~~~~~~---Li~~y~k~g~~~~A~~~f~~m~~---------~-d~~~~~~li~~~~~---~ 574 (968)
.....+.+..+.+.+..++....+. .............+...+..... + +...|......+.. .
T Consensus 123 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (514)
T 2gw1_A 123 MSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSP 202 (514)
T ss_dssp HHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCT
T ss_pred HHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhh
Confidence 3333333332222211111110000 00001111111222222222211 1 23344444444554 8
Q ss_pred CChhhHHHHHHHhhh-----cCCcC--------CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHH
Q 040643 575 GYCEGALQVFSQMTQ-----VGVQA--------NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLY 641 (968)
Q Consensus 575 g~~~~A~~l~~~m~~-----~g~~p--------~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 641 (968)
|++++|+.+|+++.. ..-.| +..++..+...+...|++++|...+..+.+.... ...+..+...|
T Consensus 203 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~ 280 (514)
T 2gw1_A 203 ESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIM 280 (514)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHH
Confidence 999999999999887 32222 2345667777888999999999999999887533 88889999999
Q ss_pred HhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHH
Q 040643 642 AKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGL 717 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~ 717 (968)
.+.|++++|.+.|+++. ..+...|..+...|...|++++|+..|+++.+ ..|+ ..++..+...+...|++++|.
T Consensus 281 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~ 358 (514)
T 2gw1_A 281 ADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCE 358 (514)
T ss_dssp HTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999865 34678999999999999999999999999998 5665 568889999999999999999
Q ss_pred HHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCChhHHH
Q 040643 718 RYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRV---HKNMEIGE 785 (968)
Q Consensus 718 ~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~---~g~~~~a~ 785 (968)
.+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ |-.|+ ..+|..+...+.. .|+++.|.
T Consensus 359 ~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~ 435 (514)
T 2gw1_A 359 TLFSEAKRK---FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEAT 435 (514)
T ss_dssp HHHHHHHHH---STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHH
T ss_pred HHHHHHHHH---cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHH
Confidence 999998764 34 3678899999999999999999999887 33343 4588888888999 99999999
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 436 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 436 NLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998776654
No 11
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.84 E-value=5.4e-15 Score=177.00 Aligned_cols=381 Identities=15% Similarity=0.137 Sum_probs=294.5
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC--CCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcC
Q 040643 318 VASLVSACASVGAFRTGEQLHSYAIKVG--ISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLN 395 (968)
Q Consensus 318 ~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 395 (968)
.+..++++...|...++.++++.++-.+ +..+....+.|+.+..+. +..+.....++...-+ ...+...+...|
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai~lg 1063 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAISNE 1063 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHHhCC
Confidence 4556677777888888888888777332 224456667777777666 4455555555544323 344667778888
Q ss_pred CHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhh-HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcC
Q 040643 396 DLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLG-EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHG 474 (968)
Q Consensus 396 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g 474 (968)
.+++|..+|++. +....+ ..+...++++++|.+..++.. +..+|..+..++.+.|
T Consensus 1064 lyEEAf~IYkKa----------------------~~~~~A~~VLie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1064 LFEEAFAIFRKF----------------------DVNTSAVQVLIEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred CHHHHHHHHHHc----------------------CCHHHHHHHHHHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 888888888874 223333 334446788888888888764 4568999999999999
Q ss_pred ChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 040643 475 MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 475 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
++++|++.|.+. -|...|..+..+|.+.|+++.+.+.+....+.. +++.+.+.++..|++.+++++.....
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 567788889999999999999999999888765 44445567999999999999644443
Q ss_pred hCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHH
Q 040643 555 KIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEAS 634 (968)
Q Consensus 555 ~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 634 (968)
..++...|..+...|...|++++|..+|... ..|..+...+.++|+++.|.+....+ .+..+|
T Consensus 1191 --~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aW 1253 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 1253 (1630)
T ss_pred --hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHH
Confidence 4556677888999999999999999999985 37899999999999999999998876 456888
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH---HHHHHHHHHcccC
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV---TFVGVLSACSHVG 711 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~---t~~~ll~a~~~~g 711 (968)
..+...+...|++..|...... ..-+...+..++..|...|.+++|+.+++..+. +.|.+. |..+.+.+-.+-+
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~--LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cChhHhHHHHHHHHHHHhCCHH
Confidence 8888888899999999998775 333555667899999999999999999998876 566543 4467777777888
Q ss_pred cHHHHHHHHHHhhhhcCCCC------CcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 712 LVNEGLRYFESMSTEYGLVP------KPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+..|+.++|.+- -+++| +..+|.-++-+|.+.|+++.|...+-+
T Consensus 1331 klmEhlk~f~~r---ini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~ 1380 (1630)
T 1xi4_A 1331 KMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN 1380 (1630)
T ss_pred HHHHHHHHHHHh---cccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHh
Confidence 899999988843 36666 367799999999999999999855443
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.83 E-value=2.7e-18 Score=201.05 Aligned_cols=417 Identities=10% Similarity=0.054 Sum_probs=278.2
Q ss_pred hHhHHHHHHHhcCChhHHHHHHhhCC---CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhcc
Q 040643 352 VEGSMLDLYVKCSDVETAYKFFLTTE---TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTS 428 (968)
Q Consensus 352 ~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 428 (968)
.+..+...|.+.|++++|...|+++. ..+..+|..+..+|.+.|++++|++.|++..+.. |
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p-------------- 90 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--P-------------- 90 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--C--------------
Confidence 34445556666666666666666543 2355667777777777777777777777665432 1
Q ss_pred CCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcc
Q 040643 429 LGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGI 508 (968)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 508 (968)
.+...|..+...+...|++++|+..|+.+. ..|+... ..+..+...
T Consensus 91 -----------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~~~--~~~~~~~~~ 136 (537)
T 3fp2_A 91 -----------------------------DHSKALLRRASANESLGNFTDAMFDLSVLS---LNGDFDG--ASIEPMLER 136 (537)
T ss_dssp -----------------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHC----------------CHHHH
T ss_pred -----------------------------chHHHHHHHHHHHHHcCCHHHHHHHHHHHh---cCCCCCh--HHHHHHHHH
Confidence 133345556666666666666666664321 1222111 112222233
Q ss_pred cchhhhhhhhHhhhhhcC--CCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcc---cHHHHHHHHHh--------cC
Q 040643 509 QALNQGRQIHAQSYISGF--SDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNI---SWNGLISGFAQ--------SG 575 (968)
Q Consensus 509 ~~~~~a~~i~~~~~~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~---~~~~li~~~~~--------~g 575 (968)
+....+...+..+++... .+........+..|....+.+.+...+......+.. .+..+...+.. .|
T Consensus 137 ~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~ 216 (537)
T 3fp2_A 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVAND 216 (537)
T ss_dssp HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 333445555555544311 111222344555666777777777776666554433 33333332222 24
Q ss_pred ChhhHHHHHHHhhhcCCcCCc--------chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCH
Q 040643 576 YCEGALQVFSQMTQVGVQANL--------YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSI 647 (968)
Q Consensus 576 ~~~~A~~l~~~m~~~g~~p~~--------~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~ 647 (968)
++++|+.+|+++.+. .|+. .++..+...+...|++++|...+..+++.. |+...+..+...|.+.|++
T Consensus 217 ~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~ 292 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENS 292 (537)
T ss_dssp HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCC
T ss_pred HHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCH
Confidence 778888888888764 3442 234455556677788899999988888854 4477788888889999999
Q ss_pred HHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 648 DDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 648 ~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
++|.+.|+++. ..+..+|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+
T Consensus 293 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 370 (537)
T 3fp2_A 293 QEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS--LNPENVYPYIQLACLLYKQGKFTESEAFFNET 370 (537)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998765 34678899999999999999999999999988 5665 567888888999999999999999988
Q ss_pred hhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhc----------CChhHH
Q 040643 724 STEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVH----------KNMEIG 784 (968)
Q Consensus 724 ~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~----------g~~~~a 784 (968)
.+. .|+ ...+..++.++.+.|++++|.+.++++ |-.++ ...+..+...+... |+++.|
T Consensus 371 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A 447 (537)
T 3fp2_A 371 KLK---FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAA 447 (537)
T ss_dssp HHH---CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHH
T ss_pred HHh---CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHH
Confidence 654 344 667888899999999999999998886 22221 22233444456666 999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 785 EYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 785 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 448 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 448 IKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997766654
No 13
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.81 E-value=2e-18 Score=202.09 Aligned_cols=447 Identities=8% Similarity=-0.011 Sum_probs=288.1
Q ss_pred ccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHH
Q 040643 281 VTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLY 360 (968)
Q Consensus 281 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y 360 (968)
..|..+...+.+.|++++|+..|+++.... +.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..+|
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 345666667777777777777777776542 2234556666666666677777777777666664 34556666677777
Q ss_pred HhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHH
Q 040643 361 VKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHT 440 (968)
Q Consensus 361 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~ 440 (968)
.+.|++++|...|+.+. .+....+..+..+...+...+|+..++++..... +.
T Consensus 104 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~--~~------------------------ 156 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDE--GR------------------------ 156 (537)
T ss_dssp HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred HHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCc--cc------------------------
Confidence 77777777777775332 2222223334444455555666666666543210 00
Q ss_pred hhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHh
Q 040643 441 QLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQ 520 (968)
Q Consensus 441 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 520 (968)
.+........+..+....+.+.++..+.+... ..|....+...+......
T Consensus 157 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~------------ 206 (537)
T 3fp2_A 157 ----------------GSQVLPSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSA------------ 206 (537)
T ss_dssp ------------------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTC------------
T ss_pred ----------------cccccchHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHh------------
Confidence 00001112223333334444443333222211 111111111111000000
Q ss_pred hhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCc----------ccHHHHHHHHHhcCChhhHHHHHHHhhhc
Q 040643 521 SYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDN----------ISWNGLISGFAQSGYCEGALQVFSQMTQV 590 (968)
Q Consensus 521 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 590 (968)
..-......|++++|..+|+++...++ .+|..+...+...|++++|+..|++....
T Consensus 207 --------------~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 207 --------------TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp --------------SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------------hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 001111223466677777766654321 24666677788889999999999998875
Q ss_pred CCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHH
Q 040643 591 GVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNA 667 (968)
Q Consensus 591 g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~ 667 (968)
.|+..++..+...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+...|..
T Consensus 273 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 349 (537)
T 3fp2_A 273 --HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349 (537)
T ss_dssp --CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHH
T ss_pred --CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4666677777888888999999999999888864 4467788999999999999999999999876 346788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHH
Q 040643 668 MITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDL 742 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~ 742 (968)
+...|...|++++|++.|+++.+ ..|+ ...+..+...+...|++++|..+|+.+.+...-.+. ...+.....+
T Consensus 350 la~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 350 LACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATI 427 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHH
Confidence 99999999999999999999998 5675 558888999999999999999999988654321222 1123444577
Q ss_pred Hhhc----------CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 743 LGRA----------GCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 743 l~r~----------G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
+.+. |++++|.+.++++ ...|+ ..+|..+...+...|+.+.|...+++++++.|++......+
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 502 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQAT 502 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 7777 9999999999987 44554 78898999999999999999999999999999887765543
No 14
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.80 E-value=5.5e-18 Score=193.56 Aligned_cols=290 Identities=14% Similarity=0.087 Sum_probs=209.8
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHh
Q 040643 531 SIGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAA 607 (968)
Q Consensus 531 ~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 607 (968)
..+..+...|.+.|++++|...|+++. ..+..+|..+...|.+.|++++|+..|+++.+.+ ..+..++..+...+.
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 105 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL 105 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH
Confidence 344445555555555555555555432 2234455555555555555555555555554432 112334444444555
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCCh---hHHhHH------------hhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSET---EASNSL------------ITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMI 669 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~l------------i~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li 669 (968)
..|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|.+.|+++. ..+...|..++
T Consensus 106 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 184 (450)
T 2y4t_A 106 KQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRA 184 (450)
T ss_dssp HTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 5555555555555554422 1122 233333 445889999999999999876 45788999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHH--------
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACV-------- 739 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~l-------- 739 (968)
..|...|++++|++.|+++.+ ..|+ ..++..+..++...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 185 ~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 185 ECFIKEGEPRKAISDLKAASK--LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHTTCGGGGHHHHHHHHH--HHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHH
Confidence 999999999999999999998 4564 678999999999999999999999998643 565 3334444
Q ss_pred ----HHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 740 ----VDLLGRAGCLSRAREFTEQM-PIEPD-----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 740 ----v~~l~r~G~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
+..+.+.|++++|.+.++++ ...|+ ...|..+...+...|+++.|...++++++++|+++..|..++.+|
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY 339 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 88999999999999999988 44555 447778888899999999999999999999999999999999999
Q ss_pred hhcCCcchHHHHHHHHHh
Q 040643 810 AAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 810 ~~~g~~~~a~~~~~~m~~ 827 (968)
...|++++|.+..+...+
T Consensus 340 ~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 999999999998877655
No 15
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.75 E-value=1.8e-17 Score=179.17 Aligned_cols=326 Identities=17% Similarity=0.173 Sum_probs=167.3
Q ss_pred HHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhh
Q 040643 436 EQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGR 515 (968)
Q Consensus 436 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~ 515 (968)
..+...+|++++|.+.++++..|+ +|..|+.++.+.|++++|++.|.+ .+|..+|..++.+|...|+++++.
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 344556688999999999996664 999999999999999999999975 368889999999999999999999
Q ss_pred hhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 516 QIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 516 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
..+....+. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 988888774 44578899999999999999999988864 67789999999999999999999999987
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH 675 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 675 (968)
..|..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 47899999999999999999998877 378999999999999999999988877765 3444455799999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh---HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC------CcchHHHHHHHHhhc
Q 040643 676 GYALEAINLFEKMKKHDVMPNH---VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP------KPEHYACVVDLLGRA 746 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p------~~~~y~~lv~~l~r~ 746 (968)
|++++|+.++++.+. ..|-. .|..+++.+-.+-|.+.+.++.|. +.-+|+| +..+|.-++-+|..-
T Consensus 221 G~~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~ 295 (449)
T 1b89_A 221 GYFEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKY 295 (449)
T ss_dssp TCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999886 55643 355566666667788888888876 3447777 488899999999999
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 747 GCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 747 G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
|+++.|...+-+-| |++---..+.....+-.|.|+--++..-.++-.|.
T Consensus 296 ~e~d~A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 296 EEYDNAIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp TCHHHHHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 99999987766553 22222223444556677777777777777766663
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.75 E-value=2.3e-16 Score=173.65 Aligned_cols=308 Identities=12% Similarity=0.072 Sum_probs=212.7
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHH
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISL 539 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 539 (968)
+..|..+...+.+.|++++|+..|+++.+. .|+ +..++..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~----------------------------------~~~~~~~~a~~ 46 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD----------------------------------NYIAYYRRATV 46 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc----------------------------------cHHHHHHHHHH
Confidence 345777888899999999999999998774 232 22334445555
Q ss_pred HHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC---Cc-chHHHH----------
Q 040643 540 YARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA---NL-YTFGSV---------- 602 (968)
Q Consensus 540 y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~-~t~~~l---------- 602 (968)
|...|++++|...|++.. ..+...|..+...|.+.|++++|+..|++..+. .| +. ..+..+
T Consensus 47 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 47 FLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLR 124 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHH
Confidence 566666666666665543 224455666666666667777777776666544 33 21 122111
Q ss_pred --HHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC
Q 040643 603 --VSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY 677 (968)
Q Consensus 603 --l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~ 677 (968)
...+...|++++|...+..+.+.. +.+...+..+...|.+.|++++|.+.|+++. ..+...|..+...|...|+
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 203 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGD 203 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 345666777777777777777653 3456677778888888888888888888754 3467788888888888888
Q ss_pred HHHHHHHHHHHHHCCCCCChHH-HH------------HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----chHHHH
Q 040643 678 ALEAINLFEKMKKHDVMPNHVT-FV------------GVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-----EHYACV 739 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~~t-~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~l 739 (968)
+++|+..|++..+ ..|+... +. .+...+...|++++|..+|+.+.+. .|+. ..|..+
T Consensus 204 ~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l 278 (359)
T 3ieg_A 204 HELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERI 278 (359)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--hCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHH
Confidence 8888888888887 5665432 22 2255677888888888888877654 3432 235567
Q ss_pred HHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 740 VDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..++...|++++|.+.+++. ...| +..+|..+...+...|+++.|....+++++++|++...+..|..++..
T Consensus 279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 77888888888888888776 3445 477777777788888888888888888888888888877777766554
No 17
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.74 E-value=5.6e-16 Score=170.58 Aligned_cols=312 Identities=13% Similarity=0.083 Sum_probs=253.5
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcC-CcchHHHHHHH
Q 040643 530 LSIGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQA-NLYTFGSVVSA 605 (968)
Q Consensus 530 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~a 605 (968)
+..+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.+. .| +...+..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHH
Confidence 3456678889999999999999999764 346678999999999999999999999999876 34 44677788888
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCC--CChhHHhHH------------hhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHH
Q 040643 606 AANLANIKQGKQVHAMIIKTGYD--SETEASNSL------------ITLYAKCGSIDDAKREFLEMP---EKNEVSWNAM 668 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~--~~~~~~~~l------------i~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~l 668 (968)
+...|++++|...+..+.+.... .+...+..+ ...|...|++++|.+.|+++. +.+...|..+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 99999999999999999875310 244445444 578899999999999999875 4578899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-chHH---------
Q 040643 669 ITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-EHYA--------- 737 (968)
Q Consensus 669 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-~~y~--------- 737 (968)
...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+...+. .|+. ..+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~ 235 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASK--LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLN 235 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHT--TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHH
Confidence 9999999999999999999998 5665 668889999999999999999999988654 4542 2222
Q ss_pred ---HHHHHHhhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 738 ---CVVDLLGRAGCLSRAREFTEQM-PIEPD-A----MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 738 ---~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.++..+.+.|++++|.+.++++ ...|+ . ..|..+...+...|+++.|...++++++++|+++..+..++.+
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 3377799999999999999987 34444 3 2344566778899999999999999999999999999999999
Q ss_pred HhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 040643 809 YAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAE 874 (968)
Q Consensus 809 y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 874 (968)
|...|++++|.+..+...+. .|...++...|..+...+++
T Consensus 316 ~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l~~~~~~~~~ 355 (359)
T 3ieg_A 316 YLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGLEKAQRLLKQ 355 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHHHHHHHHHHH
Confidence 99999999999988776542 25555666667666666553
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=5.3e-16 Score=168.67 Aligned_cols=286 Identities=9% Similarity=0.031 Sum_probs=233.1
Q ss_pred CCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHH
Q 040643 526 FSDDLSIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSV 602 (968)
Q Consensus 526 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 602 (968)
.+.+..+...+...+...|++++|.++|+++.. .+...+..++..+.+.|++++|+.+++++.+.. ..+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345666777888888889999999999887653 355677778888899999999999999988752 2244566677
Q ss_pred HHHHhhhh-hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH
Q 040643 603 VSAAANLA-NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA 678 (968)
Q Consensus 603 l~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~ 678 (968)
...+...| +.++|...+..+++.. +.+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8999999998888754 3457788899999999999999999999876 33567788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCC-------CCCcchHHHHHHHHhhcCChH
Q 040643 679 LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGL-------VPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i-------~p~~~~y~~lv~~l~r~G~~~ 750 (968)
++|++.|++..+ ..|+ ..++..+...+...|++++|..+|+...+...- +.....+..++.++.+.|+++
T Consensus 176 ~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999998 5675 567888889999999999999999988664311 333678899999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH-hhcCCc
Q 040643 751 RAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY-AAAGKW 815 (968)
Q Consensus 751 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 815 (968)
+|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..|+.+| ...|+-
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999999887 3444 4778888888899999999999999999999999999999999988 455553
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=5.5e-16 Score=167.60 Aligned_cols=289 Identities=12% Similarity=0.102 Sum_probs=129.6
Q ss_pred HhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcccCchHHHHHHHH
Q 040643 159 AKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTKIELFEIGEQFHG 238 (968)
Q Consensus 159 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 238 (968)
-++|++++|.+.+++++.|+ +|+.|..++.+.|++++|++.|.+ .+|..+|..++.+|...|++++|...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 47899999999999997765 899999999999999999999976 3688899999999999999999999888
Q ss_pred HHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccH
Q 040643 239 LIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTV 318 (968)
Q Consensus 239 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 318 (968)
...+. .+++.+.+.|+.+|.++|+++++.++|+. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88774 56688899999999999999999988864 78889999999999999999999999987 379
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHH
Q 040643 319 ASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLS 398 (968)
Q Consensus 319 ~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 398 (968)
..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 99999999999999999999877 378999999999999999999988877655 44444557899999999999
Q ss_pred HHHHHHHHHHhcC-CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChh
Q 040643 399 ESFQIFKQMQTEG-LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFG 477 (968)
Q Consensus 399 ~A~~l~~~m~~~g-~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 477 (968)
+|+.+++...... -.....|...++-+-.+.+.+.+..+.|...-+++...+.. .+...|..+.-.|.+.++++
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~-----~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAA-----EQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHH-----HTTTCHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHH-----HHHHHHHHHHHHHHhhchHH
Confidence 9999999877443 11112233333333333333443333333322222222222 24567888888888888888
Q ss_pred HHHH
Q 040643 478 EALE 481 (968)
Q Consensus 478 ~A~~ 481 (968)
.|..
T Consensus 300 ~A~~ 303 (449)
T 1b89_A 300 NAII 303 (449)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=1.4e-15 Score=168.22 Aligned_cols=275 Identities=11% Similarity=0.019 Sum_probs=197.4
Q ss_pred HcCCHHHHHH-HHHhCCC---C----CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 542 RCGRIQEAYL-VFNKIDA---K----DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 542 k~g~~~~A~~-~f~~m~~---~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
-.|++++|.. .|++... . +...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..++...|+++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 3455666665 5553321 1 23456666666777777777777777766542 223345555556666677777
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHH---------------HHHHHHhc
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNA---------------MITGFSQH 675 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~---------------li~~~~~~ 675 (968)
+|...+..+++.. +.+..++..+...|.+.|++++|.+.|+++. .| +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 7777776666653 3456666777777777777777777777654 12 2222221 23334488
Q ss_pred CCHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN---HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e 751 (968)
|++++|+..|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...|..++.++.+.|++++
T Consensus 195 ~~~~~A~~~~~~a~~--~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 195 SLFLEVKELFLAAVR--LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHH--HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHHHH--hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 999999999999998 5665 567888889999999999999999988654 454 6788999999999999999
Q ss_pred HHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-----------cchHHHHHHHHhhcCCcchH
Q 040643 752 AREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED-----------SATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 752 A~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~a 818 (968)
|.+.++++ ...|+ ..+|..+...+...|+++.|...+++++++.|++ +..|..|+.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999887 44554 7888899999999999999999999999999988 78999999999999999999
Q ss_pred HHHHH
Q 040643 819 DQIRQ 823 (968)
Q Consensus 819 ~~~~~ 823 (968)
..+.+
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98755
No 21
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.67 E-value=7.8e-15 Score=159.34 Aligned_cols=260 Identities=12% Similarity=0.084 Sum_probs=224.7
Q ss_pred CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHh
Q 040643 559 KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI 638 (968)
Q Consensus 559 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 638 (968)
.+...+..+...+...|++++|+++|+++.+.. ..+...+..+...+...|+.++|...+..+++.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 466678888999999999999999999998763 2234455667788889999999999999998864 45678889999
Q ss_pred hHHHhcC-CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcH
Q 040643 639 TLYAKCG-SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLV 713 (968)
Q Consensus 639 ~~y~k~g-~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~ 713 (968)
..|...| ++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999865 34678899999999999999999999999998 5665 56788888999999999
Q ss_pred HHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCh
Q 040643 714 NEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PI----------EPDAMVWRTLLSACRVHKNM 781 (968)
Q Consensus 714 ~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~----------~p~~~~~~~ll~~~~~~g~~ 781 (968)
++|.++|+...+ +.|+ ...+..++.++.+.|++++|.+.++++ .. ..+..+|..+...+...|+.
T Consensus 176 ~~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 176 KLAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999998864 3455 678889999999999999999998876 11 33367899999999999999
Q ss_pred hHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 782 EIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+.|....++++++.|+++..+..++.+|...|++++|.+..+..
T Consensus 253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987744
No 22
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.65 E-value=1.8e-13 Score=159.45 Aligned_cols=208 Identities=6% Similarity=-0.041 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHh-------cCCHH-------HHHHHHhcCCC---C-CHHHHHHHHHHHHhc
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAK-------CGSID-------DAKREFLEMPE---K-NEVSWNAMITGFSQH 675 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k-------~g~~~-------~A~~~f~~~~~---~-d~~~~~~li~~~~~~ 675 (968)
.+..+++.+++.. +.+..+|..++..+.+ .|+++ +|..+|++..+ | +...|..++..+...
T Consensus 256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~ 334 (530)
T 2ooe_A 256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 334 (530)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 5566777777652 4567788888887775 68887 89999987652 4 578899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH-HhhcCChHH
Q 040643 676 GYALEAINLFEKMKKHDVMPNH--VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDL-LGRAGCLSR 751 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~-l~r~G~~~e 751 (968)
|+.++|.++|+++++ +.|+. ..|...+..+.+.|.+++|+.+|+...+. .|. ...|...+-+ +...|+.++
T Consensus 335 g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~---~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 335 MKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---cCCchHHHHHHHHHHHHHcCChhH
Confidence 999999999999998 67764 36788888888889999999999987643 444 2333332222 336899999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc----hHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 752 AREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA----TYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 752 A~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
|.+++++. ...| +..+|..++......|+.+.|...++++++..|.++. .+..........|+.+++.++.+.+
T Consensus 410 A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 410 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 489 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998876 3445 4788999998888899999999999999998777665 6666677778889999998887777
Q ss_pred Hh
Q 040643 826 KD 827 (968)
Q Consensus 826 ~~ 827 (968)
.+
T Consensus 490 ~~ 491 (530)
T 2ooe_A 490 FT 491 (530)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.64 E-value=1.1e-13 Score=161.24 Aligned_cols=214 Identities=10% Similarity=0.068 Sum_probs=168.6
Q ss_pred hhHHHHHHHhhhcCCcCC-cchHHHHHHHHhh-------hhhHH-------HHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 578 EGALQVFSQMTQVGVQAN-LYTFGSVVSAAAN-------LANIK-------QGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 578 ~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~-------~~~~~-------~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
++|+.+|++.... .|+ ...|......+.+ .|+++ +|+.++..+++.-.+.+..++..++..+.
T Consensus 255 ~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~ 332 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 332 (530)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3677888887765 343 3445555555443 67776 88888888876333556889999999999
Q ss_pred hcCCHHHHHHHHhcCC--CC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH-HcccCcHHHH
Q 040643 643 KCGSIDDAKREFLEMP--EK-NE-VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSA-CSHVGLVNEG 716 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~--~~-d~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a-~~~~g~~~~a 716 (968)
+.|++++|.++|+++. .| +. ..|..++..+.+.|+.++|.++|++.++ ..|+ ...+...... +...|+.++|
T Consensus 333 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~--~~~~~~~~~~~~a~~~~~~~~~~~~A 410 (530)
T 2ooe_A 333 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 410 (530)
T ss_dssp HTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CTTCCTHHHHHHHHHHHHHTCCHHHH
T ss_pred hcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh--ccCCchHHHHHHHHHHHHHcCChhHH
Confidence 9999999999999875 34 43 5899999999999999999999999998 4554 3334433322 2358999999
Q ss_pred HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 717 LRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD--AMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
..+|+...+. .|+ ...+..+++++.+.|+.++|..++++. |..|+ ..+|...+.....+|+.+.+..+.+
T Consensus 411 ~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 411 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred HHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999988765 354 778899999999999999999999986 45554 6799999999999999999999999
Q ss_pred HHHccCCCC
Q 040643 790 HLLELEPED 798 (968)
Q Consensus 790 ~~~~l~p~~ 798 (968)
++.+..|++
T Consensus 488 r~~~~~p~~ 496 (530)
T 2ooe_A 488 RRFTAFREE 496 (530)
T ss_dssp HHHHHTHHH
T ss_pred HHHHHCchh
Confidence 999999853
No 24
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.64 E-value=1.2e-14 Score=154.27 Aligned_cols=239 Identities=9% Similarity=-0.035 Sum_probs=169.1
Q ss_pred HHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CCChhHHhHHhhHHHhcC
Q 040643 567 LISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGY-DSETEASNSLITLYAKCG 645 (968)
Q Consensus 567 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~y~k~g 645 (968)
+..+|...|++++|+..++.. -.|+..++..+...+...++.+.+.+.++.+++.+. +.+...+..+...|.+.|
T Consensus 40 l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g 115 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQ 115 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCC
Confidence 344445555555554433221 123334444444444455555555555555544443 224455666778899999
Q ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH---HHHHHHHcccCcHHHHHHHHHH
Q 040643 646 SIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF---VGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 646 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~---~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
++++|.+.|++ ..+...|..++..|.+.|+.++|++.|+++.+ ..|+.... .+.+..+...|++++|..+|++
T Consensus 116 ~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~ 191 (291)
T 3mkr_A 116 NPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQD--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQE 191 (291)
T ss_dssp CHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred CHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999 56788999999999999999999999999998 56875421 1233444566999999999999
Q ss_pred hhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH-HHHHHHHHHccCCCCc
Q 040643 723 MSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI-GEYAANHLLELEPEDS 799 (968)
Q Consensus 723 m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~l~p~~~ 799 (968)
+.+. .+++...|..++.++.+.|++++|++.+++. ...|+ +.+|..+...+...|+.+. +....+++++++|+++
T Consensus 192 ~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 192 MADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9776 2345778888999999999999999999886 55665 7788888888888888764 6788899999999988
Q ss_pred chHHHHHHHHhhcCCcchHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~ 819 (968)
... +++.+.+.++++.
T Consensus 270 ~~~----d~~~~~~~fd~~~ 285 (291)
T 3mkr_A 270 FIK----EYRAKENDFDRLV 285 (291)
T ss_dssp HHH----HHHHHHHHHHHHH
T ss_pred HHH----HHHHHHHHHHHHH
Confidence 654 4455556665554
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.63 E-value=6.4e-15 Score=162.95 Aligned_cols=285 Identities=12% Similarity=0.025 Sum_probs=216.8
Q ss_pred HHHhcCChhhHHH-HHHHhhhcCC-cC--CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcC
Q 040643 570 GFAQSGYCEGALQ-VFSQMTQVGV-QA--NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCG 645 (968)
Q Consensus 570 ~~~~~g~~~~A~~-l~~~m~~~g~-~p--~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 645 (968)
++...|++++|++ .|++...... .| +...+..+...+...|++++|...+..+++.. +.+...+..+...|.+.|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3455688999998 8887654321 12 35667788889999999999999999999864 456788999999999999
Q ss_pred CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH-HHH---------------HHHH
Q 040643 646 SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVT-FVG---------------VLSA 706 (968)
Q Consensus 646 ~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~---------------ll~a 706 (968)
++++|.+.|+++. +.+..+|..+...|...|++++|++.|+++.+ ..|+... +.. .+..
T Consensus 113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR--YTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSTTTGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999875 45788999999999999999999999999999 5665432 221 2333
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a 784 (968)
+...|++++|..+|+.+.+...-.++...+..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++.|
T Consensus 191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence 44899999999999999765333234788999999999999999999999987 44554 78999999999999999999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCEEEEEecCCCCCcchHHHHHH
Q 040643 785 EYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNSIHAFFVGDRLHPLADKIYDY 864 (968)
Q Consensus 785 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 864 (968)
...++++++++|+++..+..++.+|...|++++|.+..+...+.. |... + .....+|....++..
T Consensus 271 ~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----~~~~-----~------~~~~~~~~~~~~~~~ 335 (368)
T 1fch_A 271 VAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ----RKSR-----G------PRGEGGAMSENIWST 335 (368)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH----HTC-----------------CCCCCHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCC-----C------ccccccchhhHHHHH
Confidence 999999999999999999999999999999999999876664422 1110 0 001235667777777
Q ss_pred HHHHHHHH
Q 040643 865 LGNLNRRV 872 (968)
Q Consensus 865 l~~l~~~~ 872 (968)
|..+...+
T Consensus 336 l~~~~~~~ 343 (368)
T 1fch_A 336 LRLALSML 343 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 76665544
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=6.5e-15 Score=162.82 Aligned_cols=228 Identities=12% Similarity=0.018 Sum_probs=182.5
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~ 673 (968)
..+......+.+.|++++|...+..+++.. +.+...+..+...|.+.|++++|.+.|+++. ..+..+|..+...|.
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 335555555666666666666666665543 4466778889999999999999999999876 346889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChH-HH----------HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPNHV-TF----------VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd~~-t~----------~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
..|++++|++.|+++.+ +.|+.. .+ ..+...+...|++++|..+|+.+.+...-.++...+..++.+
T Consensus 145 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HTTCHHHHHHHHHHHHH--HCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 99999999999999998 566533 22 234778999999999999999997763332357889999999
Q ss_pred HhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 743 LGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987 44554 88999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 040643 821 IRQIMKD 827 (968)
Q Consensus 821 ~~~~m~~ 827 (968)
..+...+
T Consensus 303 ~~~~al~ 309 (365)
T 4eqf_A 303 NFLTALS 309 (365)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776654
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.62 E-value=3.8e-15 Score=164.74 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=198.1
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 560 DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
+...|..+...+.+.|++++|+.+|+++.+.. ..+..++..+...+...|++++|...+..+++.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 44557777778888888888888888877653 2244566677777778888888888888777754 345677888888
Q ss_pred HHHhcCCHHHHHHHHhcCCC--CC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPE--KN-----------EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN---HVTFVGV 703 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~--~d-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~l 703 (968)
.|.+.|++++|.+.|+++.+ |+ ...++.+...|...|++++|++.|+++.+ ..|+ ..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH--QNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHH--HSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHH--hCcCccCHHHHHHH
Confidence 88888888888888887652 21 22334457888899999999999999998 4564 6688888
Q ss_pred HHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 040643 704 LSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN 780 (968)
Q Consensus 704 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~ 780 (968)
...+...|++++|..+|+.+.+. .|+ ...|..++.+|.+.|++++|.+.++++ ...|+ ..+|..+...+...|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 88999999999999999988654 444 778899999999999999999999887 45565 8889999999999999
Q ss_pred hhHHHHHHHHHHccCCC------------CcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 781 MEIGEYAANHLLELEPE------------DSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
.+.|...+++++++.|+ +...+..|+.+|...|+.+.+.++.+
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999987 36789999999999999998887654
No 28
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.61 E-value=3.3e-13 Score=155.54 Aligned_cols=268 Identities=9% Similarity=-0.015 Sum_probs=194.3
Q ss_pred hhhhhHHHHHHH----cCCHHHHHHHHHhCCC-CCcccHHHHHHHHHh----cCChhhHHHHHHHhhhcCCcCCcchHHH
Q 040643 531 SIGNALISLYAR----CGRIQEAYLVFNKIDA-KDNISWNGLISGFAQ----SGYCEGALQVFSQMTQVGVQANLYTFGS 601 (968)
Q Consensus 531 ~~~~~Li~~y~k----~g~~~~A~~~f~~m~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 601 (968)
..+..|..+|.. .++.++|.+.|++..+ .+..++..+...|.+ .++.++|+++|++..+.| +...+..
T Consensus 148 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 224 (490)
T 2xm6_A 148 SGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLH 224 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 344455556655 5677777777765433 355566667777766 677777777777776654 2334444
Q ss_pred HHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCCC-CCHHHHHHHHHHH
Q 040643 602 VVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMPE-KNEVSWNAMITGF 672 (968)
Q Consensus 602 ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~ 672 (968)
+-..+.. .++.++|...+....+.+ +...+..|..+|.. .++.++|.+.|++..+ .+...+..+...|
T Consensus 225 lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y 301 (490)
T 2xm6_A 225 LADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLY 301 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444443 567777777777776654 44556667777777 7899999999988763 4677888888888
Q ss_pred Hhc-----CCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC---cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHh
Q 040643 673 SQH-----GYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG---LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLG 744 (968)
Q Consensus 673 ~~~-----g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 744 (968)
... ++.++|+..|++..+.| +...+..+...+...| +.++|.++|+...+. .+...+..+..+|.
T Consensus 302 ~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~ 374 (490)
T 2xm6_A 302 DKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALL 374 (490)
T ss_dssp HHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHH
T ss_pred HcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
Confidence 877 89999999999998865 4456666666666656 789999999988653 35677888888888
Q ss_pred h----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCC---CcchHHHHHHHHhh
Q 040643 745 R----AGCLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPE---DSATYVLLSNIYAA 811 (968)
Q Consensus 745 r----~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 811 (968)
. .+++++|.+.+++.--..++..|..|...+.. .+|.+.|....+++++.+|+ ++.....|+.++..
T Consensus 375 ~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 375 QGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 8 89999999999887333457777777777776 78999999999999999954 77777778777664
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.61 E-value=3.4e-16 Score=181.76 Aligned_cols=130 Identities=15% Similarity=0.175 Sum_probs=102.9
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMP-------EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTF 700 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~ 700 (968)
..-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345678888888888888888888886642 578888888888888888888888888888888888888888
Q ss_pred HHHHHHHcccCc-HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 701 VGVLSACSHVGL-VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 701 ~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
++||.++++.|. .++|.++|++|.+. |+.|+..+|+|++....|.+-++...++...
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 888888888887 47788888888665 8888888888888777777665555544333
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=5.3e-14 Score=149.37 Aligned_cols=244 Identities=10% Similarity=-0.011 Sum_probs=196.8
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCcCCc--chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC
Q 040643 569 SGFAQSGYCEGALQVFSQMTQVGVQANL--YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS 646 (968)
Q Consensus 569 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~ 646 (968)
.-....|++..|+..+++.... .|+. .....+..++...|+.+.+...+.. .-+|+......+...|.+.|+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence 3455678899999988776543 3443 3445677899999999998875533 235567788889999999999
Q ss_pred HHHHHHHHhcCC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHH
Q 040643 647 IDDAKREFLEMP----EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 647 ~~~A~~~f~~~~----~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
.++|.+.++++. .| +...|..+...|...|++++|++.|++ .++...+..+...+...|++++|.+.|+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999863 24 567788888999999999999999987 3456688888999999999999999999
Q ss_pred HhhhhcCCCCCcch---HHHHHHHHhhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCC
Q 040643 722 SMSTEYGLVPKPEH---YACVVDLLGRAGCLSRAREFTEQM-P-IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 722 ~m~~~~~i~p~~~~---y~~lv~~l~r~G~~~eA~~~~~~m-~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
.+.+. .|+... ..+.+.++...|++++|..+++++ . .++++.+|..+..++...|+++.|+...+++++++|
T Consensus 155 ~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p 231 (291)
T 3mkr_A 155 KMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS 231 (291)
T ss_dssp HHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99765 466321 123456666679999999999998 2 334688999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHhhcCCcchH-HHHHHHHHh
Q 040643 797 EDSATYVLLSNIYAAAGKWDCR-DQIRQIMKD 827 (968)
Q Consensus 797 ~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m~~ 827 (968)
+++.++..++.++...|+++++ .++++.+.+
T Consensus 232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999874 567665554
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=7e-16 Score=179.19 Aligned_cols=151 Identities=10% Similarity=0.080 Sum_probs=103.6
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
.++||+||.+|++.|+.++|.++|.+|.+. .+.|+.||+.+||+||++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m--------------------------------~~kG~~PdvvTYNtLI~G 174 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQ--------------------------------RQKRKLLTLDMYNAVMLG 174 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHS--------------------------------HHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--------------------------------hhcCCCCCHhHHHHHHHH
Confidence 357888888888888888888888776532 122344455555555556
Q ss_pred HHhcCCHHHHHHHHhcCC----CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH
Q 040643 641 YAKCGSIDDAKREFLEMP----EKNEVSWNAMITGFSQHGY-ALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE 715 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~ 715 (968)
|++.|++++|.++|++|. .||++|||+||.++++.|+ .++|.++|++|.+.|+.||.+||+++++++.+.+.++.
T Consensus 175 lck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~ 254 (1134)
T 3spa_A 175 WARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA 254 (1134)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence 666666666666666654 5677788888888888887 47889999999999999999999999987776655544
Q ss_pred HHHHHHHhhhhcCCC----CCcchHHHHHHHHhhcC
Q 040643 716 GLRYFESMSTEYGLV----PKPEHYACVVDLLGRAG 747 (968)
Q Consensus 716 a~~~~~~m~~~~~i~----p~~~~y~~lv~~l~r~G 747 (968)
.. .+..+|... |...+...|.|+|.+.|
T Consensus 255 Vr----kv~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 255 VH----KVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HG----GGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HH----HhCcccCCCCCCcccccchHHHHHHHccCC
Confidence 44 443333332 22445556788998876
No 32
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.59 E-value=1.9e-13 Score=156.83 Aligned_cols=363 Identities=13% Similarity=0.040 Sum_probs=244.1
Q ss_pred ceeHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--CCC-ChhhHHHHHHHhhcccchhhhhhhhHhhhhhcC-----
Q 040643 460 VVSWTAMIVGFVQHGMFGEALELFEEMENQ-----G--IQS-DNIGFSSAISACAGIQALNQGRQIHAQSYISGF----- 526 (968)
Q Consensus 460 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g--~~p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~----- 526 (968)
...||.|...+...|++++|++.|++..+. + ..| ...+|..+-.++...|+++.|...+..+.+...
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 456899999999999999999999886542 1 123 345788888899999999999988887765321
Q ss_pred -CC-CchhhhhHHHHHHHcC--CHHHHHHHHHhCC---CCCcccHHHHHHH---HHhcCChhhHHHHHHHhhhcCCcCCc
Q 040643 527 -SD-DLSIGNALISLYARCG--RIQEAYLVFNKID---AKDNISWNGLISG---FAQSGYCEGALQVFSQMTQVGVQANL 596 (968)
Q Consensus 527 -~~-~~~~~~~Li~~y~k~g--~~~~A~~~f~~m~---~~d~~~~~~li~~---~~~~g~~~~A~~l~~~m~~~g~~p~~ 596 (968)
.+ ...+++.+..++.+.| ++++|...|++.. ..+...+..+... +...++.++|++.|++..+. .|+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcc
Confidence 11 2234555555565554 6899999998764 2345556555544 34567888999999887764 4544
Q ss_pred -chHHHHHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHH
Q 040643 597 -YTFGSVVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--E-KNEVSWNAM 668 (968)
Q Consensus 597 -~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-~d~~~~~~l 668 (968)
.++..+...+.. .++.++|.+.+..+.+.. +.+..++..+...|.+.|++++|.+.|++.. . .+..+|..+
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 287 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHH
Confidence 333333334433 457788999988887764 4567788899999999999999999999876 3 356677777
Q ss_pred HHHHHhc-------------------CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcC
Q 040643 669 ITGFSQH-------------------GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYG 728 (968)
Q Consensus 669 i~~~~~~-------------------g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 728 (968)
...|... +..++|+..|++..+ ..|+ ..++..+...+...|++++|..+|++..+.
T Consensus 288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~-- 363 (472)
T 4g1t_A 288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK-- 363 (472)
T ss_dssp HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--
Confidence 6666432 346778888988887 5676 457888899999999999999999987543
Q ss_pred CCCCcc----hHHHHHH-HHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 729 LVPKPE----HYACVVD-LLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 729 i~p~~~----~y~~lv~-~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.|+.. .+..+.. .+...|+.++|.+.+++. .+.|+...+...+ +.++..+++.++.+|+++.+|
T Consensus 364 -~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~ 433 (472)
T 4g1t_A 364 -ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK---------DKLQKIAKMRLSKNGADSEAL 433 (472)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHH
T ss_pred -CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHH
Confidence 44422 1233333 345789999999998876 6778765554433 445677889999999999999
Q ss_pred HHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE
Q 040643 803 VLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI 839 (968)
Q Consensus 803 ~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i 839 (968)
..|+.+|...|++++|.+..++.-+.|-.-....||+
T Consensus 434 ~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 9999999999999999998776655554333345554
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.58 E-value=3.3e-14 Score=154.16 Aligned_cols=251 Identities=9% Similarity=0.024 Sum_probs=170.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh
Q 040643 532 IGNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN 608 (968)
Q Consensus 532 ~~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~ 608 (968)
.+..+...+...|++++|..+|+++. ..+...|..+...|.+.|++++|++.|+++.+. .|
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~-------------- 86 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DP-------------- 86 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT--------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--Cc--------------
Confidence 33445555566666666666665543 223445555555555566666666655555443 12
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHH--------------HH-
Q 040643 609 LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAM--------------IT- 670 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~l--------------i~- 670 (968)
.+...+..+...|.+.|++++|.+.|+++. .| +...+..+ ..
T Consensus 87 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (327)
T 3cv0_A 87 --------------------KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDF 146 (327)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------C
T ss_pred --------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhH
Confidence 233344444445555555555555554433 11 11122221 22
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC 748 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~ 748 (968)
.+...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+ ...+..++.++.+.|+
T Consensus 147 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~ 221 (327)
T 3cv0_A 147 FFAAPNEYRECRTLLHAALE--MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNR 221 (327)
T ss_dssp CTTSHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCC
Confidence 26677888888888888887 4554 567778888888888888888888887654 344 6678888889999999
Q ss_pred hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------------CcchHHHHHHHHhhcCC
Q 040643 749 LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE------------DSATYVLLSNIYAAAGK 814 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~ 814 (968)
+++|.+.++++ ...|+ ..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.+|...|+
T Consensus 222 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 301 (327)
T 3cv0_A 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR 301 (327)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC
Confidence 99999888886 44454 788888888999999999999999999999999 78899999999999999
Q ss_pred cchHHHHHH
Q 040643 815 WDCRDQIRQ 823 (968)
Q Consensus 815 ~~~a~~~~~ 823 (968)
+++|..+.+
T Consensus 302 ~~~A~~~~~ 310 (327)
T 3cv0_A 302 PDLVELTYA 310 (327)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 999988754
No 34
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.56 E-value=3e-12 Score=147.48 Aligned_cols=351 Identities=13% Similarity=0.049 Sum_probs=285.7
Q ss_pred CCceeHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhc----ccchhhhhhhhHhhhhhcCCCC
Q 040643 458 DDVVSWTAMIVGFVQ----HGMFGEALELFEEMENQGIQSDNIGFSSAISACAG----IQALNQGRQIHAQSYISGFSDD 529 (968)
Q Consensus 458 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~ 529 (968)
.+..++..+...|.. .+++++|+.+|++..+.| +...+..+-..+.. .++.+.|.+.+..+.+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 456677777778887 899999999999988764 34455555566666 789999999999998876 5
Q ss_pred chhhhhHHHHHHH----cCCHHHHHHHHHhCCCC-CcccHHHHHHHHHh----cCChhhHHHHHHHhhhcCCcCCcchHH
Q 040643 530 LSIGNALISLYAR----CGRIQEAYLVFNKIDAK-DNISWNGLISGFAQ----SGYCEGALQVFSQMTQVGVQANLYTFG 600 (968)
Q Consensus 530 ~~~~~~Li~~y~k----~g~~~~A~~~f~~m~~~-d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 600 (968)
...+..|..+|.. .++.++|...|++..+. +..++..|...|.. .++.++|+++|++..+.| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6677788899988 88999999999886544 66688888888887 789999999999998765 455666
Q ss_pred HHHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHH
Q 040643 601 SVVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITG 671 (968)
Q Consensus 601 ~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~ 671 (968)
.+-..+.. .++.++|...+....+.+ +......|..+|.. .++.++|.+.|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666666 789999999999998865 56677888888886 899999999999876 4567788888888
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc-----CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 672 FSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV-----GLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 672 ~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. + +...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHH
Confidence 887 899999999999998764 445666677777766 8999999999988653 2 34567778888
Q ss_pred HhhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh----
Q 040643 743 LGRAG---CLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA---- 811 (968)
Q Consensus 743 l~r~G---~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 811 (968)
|.+.| ++++|.+.+++.--..++..|..|...+.. .+|.+.|....+++.+.. ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 88767 889999999987333668888888888887 899999999999998864 68899999999999
Q ss_pred cCCcchHHHHHHHHHhCC
Q 040643 812 AGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~~g 829 (968)
.+++++|.+..+...+.|
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999877776655
No 35
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.53 E-value=8.2e-13 Score=143.05 Aligned_cols=256 Identities=13% Similarity=0.081 Sum_probs=166.5
Q ss_pred CceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHH
Q 040643 459 DVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALIS 538 (968)
Q Consensus 459 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 538 (968)
+...|..+...+.+.|++++|+.+|+++.+.. |+ +...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----------------------------------~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PE----------------------------------REEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT----------------------------------CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHH
Confidence 45577888889999999999999999987742 32 2334455666
Q ss_pred HHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHH------------
Q 040643 539 LYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVV------------ 603 (968)
Q Consensus 539 ~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll------------ 603 (968)
.|.+.|++++|...|+++. ..+..+|..+...|...|++++|++.|+++... .|+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHH
Confidence 6777777777777776553 235567777888888888888888888887764 33332222222
Q ss_pred --HH--HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC
Q 040643 604 --SA--AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHG 676 (968)
Q Consensus 604 --~a--~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g 676 (968)
.. +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|+++. ..+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 22 556677777777777776653 3355666667777777777777777776654 334566777777777777
Q ss_pred CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-------------cchHHHHHHH
Q 040643 677 YALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-------------PEHYACVVDL 742 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-------------~~~y~~lv~~ 742 (968)
++++|++.|+++.+ ..|+ ..++..+...+...|++++|.++|+.+.+. .|+ ...|..+..+
T Consensus 221 ~~~~A~~~~~~a~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~ 295 (327)
T 3cv0_A 221 RPQEALDAYNRALD--INPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM---QVGGTTPTGEASREATRSMWDFFRML 295 (327)
T ss_dssp CHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HTTSCC-----CCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCccccccccchhhcCHHHHHHHHHH
Confidence 77777777777766 4454 445666666677777777777777665443 222 3445555666
Q ss_pred HhhcCChHHHHHHHHh
Q 040643 743 LGRAGCLSRAREFTEQ 758 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~ 758 (968)
+.+.|+.++|.+++++
T Consensus 296 ~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 296 LNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHTTCHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHHH
Confidence 6666666666665554
No 36
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.50 E-value=3.2e-13 Score=136.74 Aligned_cols=191 Identities=13% Similarity=0.054 Sum_probs=158.1
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGV 703 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~l 703 (968)
+++...+..+...|.+.|++++|...|++.. ..+...|..+...+...|+.++|+..|++.++ +.|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 4567778888899999999999999999765 34778999999999999999999999999998 67874 578888
Q ss_pred HHHHccc-----------CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCHHHHHH
Q 040643 704 LSACSHV-----------GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDAMVWRT 770 (968)
Q Consensus 704 l~a~~~~-----------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ 770 (968)
..++... |++++|...|+...+. .|+ ...+..+..+|.+.|++++|.+.+++. .+..++.+|..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence 8899999 9999999999988654 676 677888999999999999999999987 22277899999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHH
Q 040643 771 LLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 771 ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987655
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=3.2e-12 Score=146.60 Aligned_cols=381 Identities=9% Similarity=-0.036 Sum_probs=214.5
Q ss_pred hhhHhHHHHHHHhcCChhHHHHHHhhCC------------CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 040643 350 IIVEGSMLDLYVKCSDVETAYKFFLTTE------------TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQY 417 (968)
Q Consensus 350 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 417 (968)
...+|.|...|...|+.++|++.|++.. ....++|+.+...|...|++++|...+++..+.
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i------- 123 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV------- 123 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------
Confidence 3455666666666666666666664421 123567888888888888888888888766432
Q ss_pred chhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCC----CCceeHHHHHHHHHh--cCChhHHHHHHHHHHhcCC
Q 040643 418 TYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPE----DDVVSWTAMIVGFVQ--HGMFGEALELFEEMENQGI 491 (968)
Q Consensus 418 t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~ 491 (968)
...... ....+++.+..++.. .+++++|++.|++..+.
T Consensus 124 ----------------------------------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-- 167 (472)
T 4g1t_A 124 ----------------------------------CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-- 167 (472)
T ss_dssp ----------------------------------HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--
T ss_pred ----------------------------------hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--
Confidence 111110 011234444444444 35689999999998874
Q ss_pred CCChhh-HHHHHHH---hhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH----cCCHHHHHHHHHhCC---CCC
Q 040643 492 QSDNIG-FSSAISA---CAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR----CGRIQEAYLVFNKID---AKD 560 (968)
Q Consensus 492 ~pd~~t-~~~ll~a---~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~m~---~~d 560 (968)
.|+... +..+..+ ....+..+.+.+.+..+++..+. +..++..+...+.. .|+.++|.+.+++.. ..+
T Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~ 246 (472)
T 4g1t_A 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH
Confidence 565433 3333333 33445567777777777776543 44455555555544 456788888887653 346
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
...|..+...|.+.|++++|+..|++..+. .|+... +..+-..+...+.... . ........
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~---------~-------~~~~~~~~ 308 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLHCQIGCCYRAKVFQVM---------N-------LRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHH---------H-------C------C
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHhh---------h-------HHHHHHHH
Confidence 667888999999999999999999998765 565433 2222222211111000 0 00011111
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHH-HHcccC
Q 040643 640 LYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLS-ACSHVG 711 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~-a~~~~g 711 (968)
.....+..++|...|++.. ..+..+|..+...|...|++++|++.|++.++. .|+.. .+..+.. ...+.|
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~--~~~~~~~~~~~~~~~~~~~~~~~ 386 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK--ELTPVAKQLLHLRYGNFQLYQMK 386 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHTSS
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHHHHHCC
Confidence 2222344677777777654 345668888999999999999999999999984 44432 2333332 345789
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
+.++|+..|++.. .+.|+..... +.++.+.+++++. ...| ++.+|..|...+...|+.+.|....+
T Consensus 387 ~~~~Ai~~y~kal---~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 387 CEDKAIHHFIEGV---KINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE 454 (472)
T ss_dssp CHHHHHHHHHHHH---HSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------
T ss_pred CHHHHHHHHHHHH---hcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999998765 3566643222 2223334444433 2334 36788888889999999999999999
Q ss_pred HHHccCCCCcchHHHHH
Q 040643 790 HLLELEPEDSATYVLLS 806 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~ 806 (968)
++++++|.++.++.-++
T Consensus 455 kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 455 RGLESGSLIPSASSWNG 471 (472)
T ss_dssp -----------------
T ss_pred HHHhcCCCCCcHhhcCC
Confidence 99999999988776554
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.45 E-value=1.7e-12 Score=135.13 Aligned_cols=216 Identities=12% Similarity=0.068 Sum_probs=155.3
Q ss_pred cHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 563 SWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 563 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
.|..+...+...|++++|+..|++..+.. ++ ...+..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~-----------------------------------~~~~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KD-----------------------------------ITYLNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CC-----------------------------------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--cc-----------------------------------HHHHHHHHHHHH
Confidence 45555666666666666666666655543 33 344445555555
Q ss_pred hcCCHHHHHHHHhcCCC--C----C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCc
Q 040643 643 KCGSIDDAKREFLEMPE--K----N----EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGL 712 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~~--~----d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~ 712 (968)
..|++++|.+.|++..+ | + ...|..+...|...|++++|++.|+++.+ +.|+.. .+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhH
Confidence 55555555555555431 1 1 46777788888888888888888888887 566643 3445577
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
+++|...++.+... .|+ ...+..++.++.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++
T Consensus 121 ~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 88888888877542 444 566778888888888888888888876 3344 47788888888899999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
++++++|+++..|..++.+|...|++++|.+..+...+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999887665543
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.9e-12 Score=134.64 Aligned_cols=234 Identities=13% Similarity=0.068 Sum_probs=150.1
Q ss_pred chhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCC--cCC----cchHHH
Q 040643 530 LSIGNALISLYARCGRIQEAYLVFNKIDA--KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGV--QAN----LYTFGS 601 (968)
Q Consensus 530 ~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~t~~~ 601 (968)
...+..+...|...|++++|...|++... .+...|..+...|...|++++|++.|++..+... .|+ ..++..
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 35677889999999999999999986532 6677899999999999999999999999876421 111 233334
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A 681 (968)
+...+...|++++|...+..+.+. .|+. ..+...|+.++|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~---------------------------------~~~~-------~~~~~~~~~~~a 124 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE---------------------------------HRTA-------DILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH---------------------------------CCCH-------HHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc---------------------------------Cchh-------HHHHHHhHHHHH
Confidence 444444444444444444444442 2221 223444555666
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 682 INLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 682 ~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
++.++++.. ..|+ ...+..+...+...|++++|..+|+...+. .|+ ...|..++.++.+.|++++|.+.+++.
T Consensus 125 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 125 LKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666666655 4444 234555555666666666666666655433 222 455666666666666666666666655
Q ss_pred -CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCcchHHHHHHH
Q 040643 760 -PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELE------PEDSATYVLLSNI 808 (968)
Q Consensus 760 -~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~ 808 (968)
...|+ ..+|..+...+...|+.+.|....+++++++ |++...+..|..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 33344 6677777777778888888888888888888 7777666666543
No 40
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.44 E-value=2.2e-12 Score=135.77 Aligned_cols=239 Identities=8% Similarity=-0.120 Sum_probs=181.4
Q ss_pred cCChhhHHHHHHHhhhcCC--cC-CcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGV--QA-NLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDA 650 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~--~p-~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A 650 (968)
.|++++|+..|+++.+... .| +..++..+...+...|++++|...+..+++.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 4566677777777665421 11 23455566666667777777777777776653 34577888888999999999999
Q ss_pred HHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhc
Q 040643 651 KREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEY 727 (968)
Q Consensus 651 ~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 727 (968)
.+.|+++. +.+...|..+...|...|++++|++.|+++.+ ..|+.......+..+...|++++|..+|+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~- 173 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK- 173 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 99999876 34678999999999999999999999999998 6787766666666667789999999999877654
Q ss_pred CCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 728 GLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 728 ~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.|+......++..+...++.++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|++...
T Consensus 174 --~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 174 --SDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --SCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 333333344778888888899999988876 44442 5788888888999999999999999999999988654
Q ss_pred HHHHHHHHhhcCCcchHHHH
Q 040643 802 YVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 802 ~~~l~~~y~~~g~~~~a~~~ 821 (968)
+ +.++...|++++|.+-
T Consensus 252 ~---~~~~~~l~~~~~a~~~ 268 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDD 268 (275)
T ss_dssp H---HHHHHHHHHHHHC---
T ss_pred H---HHHHHHHHHHHhhHHH
Confidence 4 6678888888887654
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.43 E-value=3.8e-12 Score=133.83 Aligned_cols=254 Identities=10% Similarity=0.032 Sum_probs=141.5
Q ss_pred hhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcc--hHHHHHHHH
Q 040643 532 IGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLY--TFGSVVSAA 606 (968)
Q Consensus 532 ~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~ll~a~ 606 (968)
+.......|.+.|++++|...|++..+ .+...|..+...|.+.|++++|++.|++.....-.|+.. .+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556677777777777777776532 345567777777777777777777777776633222211 244555555
Q ss_pred hhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHH
Q 040643 607 ANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAIN 683 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~ 683 (968)
...|+.++|...+..+.+.. +.+..++..+...|.+.|++++|.+.|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666665543 22344555555666666666666666655441 234455555422223345566666
Q ss_pred HHHHHHHCCCCCC-hHHHHHHHHHHcccCc---HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 684 LFEKMKKHDVMPN-HVTFVGVLSACSHVGL---VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 684 l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
.|+++.+ ..|+ ...+..+..++...|. .++|...|+...+...-.|+.. -
T Consensus 164 ~~~~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~----------------------- 217 (272)
T 3u4t_A 164 SFVKVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K----------------------- 217 (272)
T ss_dssp HHHHHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------------
T ss_pred HHHHHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------------
Confidence 6655555 4444 2334444444444443 4444444443322211111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 760 PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 760 ~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
..-..+|..+...+...|+.+.|...++++++++|+|+.+.-.+..+....+.
T Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~~ 270 (272)
T 3u4t_A 218 --DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270 (272)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--------
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccccc
Confidence 00024566677778889999999999999999999999888888777665543
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.39 E-value=8.3e-12 Score=129.55 Aligned_cols=195 Identities=11% Similarity=-0.006 Sum_probs=155.8
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSA 706 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a 706 (968)
...+..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALA--SDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHH
Confidence 4556677778888888888888888765 34677888888888888888999988888887 4554 5577778888
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
+...|++++|.++|+.+.+ .+..|. ...+..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+.+.
T Consensus 115 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHH
Confidence 8888899999988888765 234554 667778888888889999998888876 33443 7778888888888899999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
|...++++++..|++...+..++.+|...|++++|.+..+.+.+.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 999999999999988888899999999999999998887776553
No 43
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.38 E-value=1.1e-11 Score=125.69 Aligned_cols=195 Identities=12% Similarity=0.076 Sum_probs=144.7
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...+..+...|...|++++|.+.|+++. ..+...|..+...|...|+.++|++.|+++.+ ..|+ ..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS--IKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCChHHHHHHHH
Confidence 34556667777777888888888777654 33566777788888888888888888888877 4554 456777777
Q ss_pred HHccc-CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 040643 706 ACSHV-GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM 781 (968)
Q Consensus 706 a~~~~-g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 781 (968)
.+... |++++|..+|+.+.+ .+..|+ ...+..++.++.+.|++++|.+.++++ ...|+ ..+|..+...+...|+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 77888 888888888887765 233444 566777778888888888888887776 33444 67777777778888888
Q ss_pred hHHHHHHHHHHccCC-CCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 782 EIGEYAANHLLELEP-EDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.|....++++++.| +++..+..++.+|...|++++|....+.+.+
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 888888888888888 8888888888888888888888887777654
No 44
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.37 E-value=1.2e-11 Score=135.61 Aligned_cols=243 Identities=9% Similarity=0.053 Sum_probs=191.0
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCc-chHHHHHHHHhhhhh-HHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANL-YTFGSVVSAAANLAN-IKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~~~~~-~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
..|+.+...+.+.|++++|++.|++.... .|+. ..|..+-.++...|+ +++|...+..+++.. +.+..+|+.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 35666677777777778888877777654 4543 445555666677775 888888887777754 346778888889
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcc-cCcHH
Q 040643 640 LYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSH-VGLVN 714 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~-~g~~~ 714 (968)
.|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|+++++ +.|+ ...|..+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999876 45788999999999999999999999999999 7786 5578888888888 66657
Q ss_pred HH-----HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcC--ChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC------
Q 040643 715 EG-----LRYFESMSTEYGLVPK-PEHYACVVDLLGRAG--CLSRAREFTEQMPIEPD-AMVWRTLLSACRVHK------ 779 (968)
Q Consensus 715 ~a-----~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G--~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g------ 779 (968)
+| +.+|+...+ +.|+ ...|..+..+|.+.| ++++|.++++++...|+ ..++..|...+...|
T Consensus 253 eA~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 77 477877654 4676 667888888999988 68999999988866676 677777777776653
Q ss_pred --C-hhHHHHHHHHH-HccCCCCcchHHHHHHHHhhc
Q 040643 780 --N-MEIGEYAANHL-LELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 780 --~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+ ++.|..+.+++ ++++|.+...|..++..+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 3 58999999999 999999999999988876643
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.36 E-value=4.9e-11 Score=123.63 Aligned_cols=206 Identities=15% Similarity=0.103 Sum_probs=155.0
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
...|..+...|...|++++|++.|+++.... | .+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~----------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--P----------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T----------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--C----------------------------------ChHHHHHHHHHH
Confidence 3467777888888889999988888876542 2 233345556666
Q ss_pred HHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHH
Q 040643 641 YAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a 716 (968)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+.+..|+ ...+..+..++...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 666777777777776654 33566778888888888888888888888877445665 44677777788888888888
Q ss_pred HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 717 LRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
..+|+.+.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.|....+++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888877654 343 667788888899999999999888886 4444 467777787888899999999999999999
Q ss_pred cCCCCcchHHHH
Q 040643 794 LEPEDSATYVLL 805 (968)
Q Consensus 794 l~p~~~~~~~~l 805 (968)
+.|+++.....+
T Consensus 238 ~~p~~~~~~~~l 249 (252)
T 2ho1_A 238 LYPGSLEYQEFQ 249 (252)
T ss_dssp HCTTSHHHHHHH
T ss_pred HCCCCHHHHHHH
Confidence 999988765544
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=6.4e-11 Score=124.33 Aligned_cols=225 Identities=9% Similarity=-0.049 Sum_probs=175.8
Q ss_pred hHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CCcc----cHHHHHHH
Q 040643 497 GFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDA--KDNI----SWNGLISG 570 (968)
Q Consensus 497 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d~~----~~~~li~~ 570 (968)
.+...-..+...|+++.|...+..+++.... +..++..+...|...|++++|...|++... .+.. +|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 4445566778899999999999999987643 566788899999999999999999987654 2322 38899999
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHh-hHHHhcCCHHH
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLI-TLYAKCGSIDD 649 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li-~~y~k~g~~~~ 649 (968)
|...|++++|++.|++..+.. ..+..++..+...+...|++++|...+..+++.. +.+...+..+. ..|. .+++++
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~~ 160 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYVK 160 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHHH
Confidence 999999999999999998753 2244677888889999999999999998887752 44567777777 5555 459999
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCCh------HHHHHHHHHHcccCcHHHH
Q 040643 650 AKREFLEMP---EKNEVSWNAMITGFSQHGY---ALEAINLFEKMKKHD-VMPNH------VTFVGVLSACSHVGLVNEG 716 (968)
Q Consensus 650 A~~~f~~~~---~~d~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~Pd~------~t~~~ll~a~~~~g~~~~a 716 (968)
|.+.|+++. +.+...|..+...+...|+ .++|+..|++..+.. -.|+. .++..+...+...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999876 3357788889999988888 888999999988731 12442 3566666677777777777
Q ss_pred HHHHHHhhh
Q 040643 717 LRYFESMST 725 (968)
Q Consensus 717 ~~~~~~m~~ 725 (968)
.++|++..+
T Consensus 241 ~~~~~~al~ 249 (272)
T 3u4t_A 241 DAAWKNILA 249 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776643
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.33 E-value=5.9e-11 Score=120.36 Aligned_cols=209 Identities=12% Similarity=0.028 Sum_probs=157.1
Q ss_pred CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhh
Q 040643 560 DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLIT 639 (968)
Q Consensus 560 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 639 (968)
+...|..+...|...|++++|++.|+++.+.. +.+...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD------------------------------------PKNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC------------------------------------ccchHHHHHHHH
Confidence 34456666666666777777776666665431 223445566667
Q ss_pred HHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH
Q 040643 640 LYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQH-GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN 714 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~ 714 (968)
.|...|++++|.+.|+++. ..+..+|..+...|... |++++|++.|+++.+.+..|+ ...+..+..++...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 7777777777777777654 34667888888888899 999999999999888444555 456778888888999999
Q ss_pred HHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 040643 715 EGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP--DAMVWRTLLSACRVHKNMEIGEYAANH 790 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~~ 790 (968)
+|..+|+.+.+. .|+ ...+..++.++.+.|++++|.+.++++ ...| +...|..+...+...|+.+.+....+.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999887654 444 677888899999999999999998887 3344 466676666678899999999999999
Q ss_pred HHccCCCCcchHHHHHH
Q 040643 791 LLELEPEDSATYVLLSN 807 (968)
Q Consensus 791 ~~~l~p~~~~~~~~l~~ 807 (968)
+.++.|+++.....+.+
T Consensus 208 ~~~~~p~~~~~~~~l~~ 224 (225)
T 2vq2_A 208 LQANFPYSEELQTVLTG 224 (225)
T ss_dssp HHHHCTTCHHHHHHHC-
T ss_pred HHHhCCCCHHHHHHhcc
Confidence 99999999888776643
No 48
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.32 E-value=1.3e-11 Score=127.05 Aligned_cols=175 Identities=12% Similarity=0.053 Sum_probs=104.1
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~ 708 (968)
.+..+...|.+.|++++|.+.|+++. ..+...|..+...|...|++++|++.|+++.+ ..| +...+..+...+.
T Consensus 59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~ 136 (243)
T 2q7f_A 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--AGMENGDLFYMLGTVLV 136 (243)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 34444455555555555555555443 23455666666666666666666666666666 334 3445555666666
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~ 785 (968)
..|++++|..+|+.+.+. .| +...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+.|.
T Consensus 137 ~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 213 (243)
T 2q7f_A 137 KLEQPKLALPYLQRAVEL---NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL 213 (243)
T ss_dssp HTSCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence 666666666666665433 22 2455666666666777777777666665 2233 3566666666777777777777
Q ss_pred HHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 786 YAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 786 ~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
...+++++++|+++..+..++.+....
T Consensus 214 ~~~~~~~~~~p~~~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 214 EMLDKAIDIQPDHMLALHAKKLLGHHH 240 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHTC-----
T ss_pred HHHHHHHccCcchHHHHHHHHHHHhhc
Confidence 777777777777777766666555443
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.31 E-value=1.6e-11 Score=126.37 Aligned_cols=195 Identities=9% Similarity=0.076 Sum_probs=153.0
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVL 704 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll 704 (968)
.....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+ ..|+ ..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALE--LDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCcchHHHHHHH
Confidence 345567778888999999999999999875 34688999999999999999999999999998 5664 56788888
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNME 782 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~ 782 (968)
..+...|++++|.++|+.+.+.. +.+...+..++.++.+.|++++|.+.++++ ...| +..+|..+...+...|+.+
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999987642 234677888999999999999999999987 4444 4788888888999999999
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|...++++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 177 ~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999998776654
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.30 E-value=5.9e-11 Score=130.19 Aligned_cols=221 Identities=10% Similarity=0.069 Sum_probs=189.0
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC-HHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 040643 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS-IDDAKREFLEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 598 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~-~~~A~~~f~~~~---~~d~~~~~~li~~~~ 673 (968)
.+..+-..+...|+.++|...+..+++.. +.+..+|+.+...|.+.|+ +++|.+.|+++. ..+...|+.+...+.
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555666778899999999999999865 4467889999999999997 999999999876 457889999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhh-cCChH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGR-AGCLS 750 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r-~G~~~ 750 (968)
..|++++|+..|+++++ +.|+ ...|..+..++.+.|++++|+.+|+++.+. .|+ ...|..+..+|.+ .|..+
T Consensus 178 ~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 178 WLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999 7886 558999999999999999999999998754 666 7788889999999 67768
Q ss_pred HH-----HHHHHhC-CCCCC-HHHHHHHHHHHHhcC--ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC--------
Q 040643 751 RA-----REFTEQM-PIEPD-AMVWRTLLSACRVHK--NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG-------- 813 (968)
Q Consensus 751 eA-----~~~~~~m-~~~p~-~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-------- 813 (968)
+| ++.+++. .+.|+ ..+|..+...+...| +.+.|...++++ +++|+++..+..|+.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4666665 56776 889999988888888 689999999998 999999999999999999985
Q ss_pred -CcchHHHHHHHH
Q 040643 814 -KWDCRDQIRQIM 825 (968)
Q Consensus 814 -~~~~a~~~~~~m 825 (968)
..++|.++.+.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 257888887776
No 51
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.29 E-value=1.3e-10 Score=131.80 Aligned_cols=343 Identities=13% Similarity=0.041 Sum_probs=216.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccch---hhhhhhhHhhhhhcCCCCchhhhhHHHHHHH
Q 040643 466 MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQAL---NQGRQIHAQSYISGFSDDLSIGNALISLYAR 542 (968)
Q Consensus 466 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 542 (968)
+...+.+.|++++|+++|++..+.|-.+-... +-..+...|+. ++|.+.+..+.+. ++..+..|..++..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~---Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYSEAQVG---LADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGT---CC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH---HHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 55667788999999999999988763222222 22223335555 7888888887755 44555666665555
Q ss_pred cC-----CHHHHHHHHHhCCCC-CcccHHHHHHHHHhcCChh---hHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHH
Q 040643 543 CG-----RIQEAYLVFNKIDAK-DNISWNGLISGFAQSGYCE---GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIK 613 (968)
Q Consensus 543 ~g-----~~~~A~~~f~~m~~~-d~~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~ 613 (968)
.| +.++|...|++...+ +..++..|...|...+..+ ++++.+......|. ......+-..+...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcc
Confidence 54 778898888876544 5568888888888776544 44555555444442 334444555555555444
Q ss_pred HHHHHHHHHHHhCCCCChhHHhHHhhHHHhcC---CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc----CCHHHHHH
Q 040643 614 QGKQVHAMIIKTGYDSETEASNSLITLYAKCG---SIDDAKREFLEMP---EKNEVSWNAMITGFSQH----GYALEAIN 683 (968)
Q Consensus 614 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g---~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~----g~~~~A~~ 683 (968)
.+......+.+.-...++..+..|..+|.+.| +.++|.+.|++.. .++...+..+...|... ++.++|++
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence 33333333333223344557888889999999 8899999998765 34555557777777554 68999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHH-H--cccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcC-----ChHHHHHH
Q 040643 684 LFEKMKKHDVMPNHVTFVGVLSA-C--SHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAG-----CLSRAREF 755 (968)
Q Consensus 684 l~~~m~~~g~~Pd~~t~~~ll~a-~--~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G-----~~~eA~~~ 755 (968)
.|++.. .| +...+..+... + ...|+.++|.++|++..+. | +...+..|..+|. .| ++++|.+.
T Consensus 239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~ 309 (452)
T 3e4b_A 239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAH 309 (452)
T ss_dssp HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence 999986 22 34455555554 3 5588999999999987543 3 4566777777776 55 99999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh----cCCcchHHHHHHHHHh
Q 040643 756 TEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA----AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~ 827 (968)
+++.. .-++..+..|...+.. ..|.+.|...++++.+ +.++..+..|+.+|.. ..+.++|....+.-.+
T Consensus 310 ~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~ 386 (452)
T 3e4b_A 310 FEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA 386 (452)
T ss_dssp HHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred HHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 99987 4456666666555544 3388999999999876 4578888999999985 4577888888777776
Q ss_pred CCC
Q 040643 828 RGV 830 (968)
Q Consensus 828 ~g~ 830 (968)
.|.
T Consensus 387 ~g~ 389 (452)
T 3e4b_A 387 QDT 389 (452)
T ss_dssp TCC
T ss_pred CCC
Confidence 663
No 52
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.28 E-value=1.3e-11 Score=140.74 Aligned_cols=204 Identities=9% Similarity=-0.011 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCH-HHHHHHHhcCC--C-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040643 612 IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSI-DDAKREFLEMP--E-KNEVSWNAMITGFSQHGYALEAINLFEK 687 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~-~~A~~~f~~~~--~-~d~~~~~~li~~~~~~g~~~~A~~l~~~ 687 (968)
++.+.+.+....+. .+.+...+..+...|...|++ ++|.+.|++.. . .+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444444433332 234677888888899999999 99999999875 3 4678999999999999999999999999
Q ss_pred HHHCCCCCChHHHHHHHHHHccc---------CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc--------CCh
Q 040643 688 MKKHDVMPNHVTFVGVLSACSHV---------GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA--------GCL 749 (968)
Q Consensus 688 m~~~g~~Pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~--------G~~ 749 (968)
.++ +.|+...+..+..++... |++++|..+|++..+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 998 679988888999999999 9999999999988654 565 77888899999998 999
Q ss_pred HHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 750 SRAREFTEQM-PIEP----DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
++|.+.+++. .+.| +...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 5566 5889999999999999999999999999999999999999999999999999999864
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.27 E-value=3.2e-10 Score=119.17 Aligned_cols=223 Identities=10% Similarity=-0.039 Sum_probs=119.4
Q ss_pred ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhh----hhhHHHHHHHHHHHHHhCCCCChhHHhHH
Q 040643 562 ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAAN----LANIKQGKQVHAMIIKTGYDSETEASNSL 637 (968)
Q Consensus 562 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 637 (968)
.++..+...|...|++++|++.|++..+.+ +...+..+-..+.. .++.++|...+..+.+.+ +...+..|
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 344455555555566666666665555421 12233333333444 445555555555544443 44445555
Q ss_pred hhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHc
Q 040643 638 ITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACS 708 (968)
Q Consensus 638 i~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~ 708 (968)
..+|.. .|++++|.+.|++.. ..+..+|..+...|.. .|+.++|++.|++..+.+ +...+..+...+.
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 157 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD 157 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHH
Confidence 555655 666666666666544 2355566666666666 666666666666666644 3344445555555
Q ss_pred c----cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh--
Q 040643 709 H----VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQM-PIEPDAMVWRTLLSACRV-- 777 (968)
Q Consensus 709 ~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~-- 777 (968)
. .+++++|..+|+...+. .+...+..+..+|.+ .|++++|.+.+++. ...| ...+..|...+..
T Consensus 158 ~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 158 AGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTS
T ss_pred cCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCC
Confidence 4 66666666666655432 123445555555555 56666666665554 1222 4444444444554
Q ss_pred --cCChhHHHHHHHHHHccCCCC
Q 040643 778 --HKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 778 --~g~~~~a~~~~~~~~~l~p~~ 798 (968)
.+|.+.|....+++++++|++
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CcccCHHHHHHHHHHHHHcCCHH
Confidence 556666666666666665543
No 54
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=1.1e-10 Score=114.41 Aligned_cols=162 Identities=14% Similarity=0.078 Sum_probs=128.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
+...|..+...|...|++++|++.|++.++ +.|+. .++..+..++.+.|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 456777888888888888888888888887 67764 46777777888888888888888877543 344 556666
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
+...+...+++++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|+++.+|..++.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 777888888888888887776 44554 6778788888888999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHh
Q 040643 817 CRDQIRQIMKD 827 (968)
Q Consensus 817 ~a~~~~~~m~~ 827 (968)
+|.+..+..-+
T Consensus 159 ~A~~~~~~al~ 169 (184)
T 3vtx_A 159 EAVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99887665433
No 55
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.27 E-value=7.9e-10 Score=125.19 Aligned_cols=358 Identities=9% Similarity=0.019 Sum_probs=179.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHH
Q 040643 387 MLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAM 466 (968)
Q Consensus 387 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 466 (968)
+...+.+.|++++|+++|++..+.|.. + .+..+-..+...|+. .+.++|...|++....+...+..+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~-~--A~~~Lg~~y~~~g~~----------~d~~~A~~~~~~A~~~~~~A~~~L 75 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS-E--AQVGLADIQVGTRDP----------AQIKQAEATYRAAADTSPRAQARL 75 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-T--GGGTCC--------------------------------------CHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHccCCC----------CCHHHHHHHHHHHHhCCHHHHHHH
Confidence 344556667777777777777666522 1 121121112222211 112455555555444455666666
Q ss_pred HHHHHhcC-----ChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHH
Q 040643 467 IVGFVQHG-----MFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYA 541 (968)
Q Consensus 467 i~~~~~~g-----~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 541 (968)
...+...+ ++++|+.+|++..+.|... .+..+-..+...+..+.....+..+.+.....++.....|..+|.
T Consensus 76 g~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 76 GRLLAAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYR 152 (452)
T ss_dssp HHHHHTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66555544 6678888888877755322 333333334333333322222222222211123344445555555
Q ss_pred HcC----CHHHHHHHHHhCCCCCcccHHHHHHHHHhcC---ChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHH
Q 040643 542 RCG----RIQEAYLVFNKIDAKDNISWNGLISGFAQSG---YCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQ 614 (968)
Q Consensus 542 k~g----~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 614 (968)
..+ ..+.+..++......+..++..|...|.+.| +.++|++.|++..
T Consensus 153 ~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-------------------------- 206 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGV-------------------------- 206 (452)
T ss_dssp HHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------------------
T ss_pred cCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHH--------------------------
Confidence 555 3333444444444444445555555555555 4455555554444
Q ss_pred HHHHHHHHHHhCCCCChhHHhHHhhHHHhc----CCHHHHHHHHhcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHH
Q 040643 615 GKQVHAMIIKTGYDSETEASNSLITLYAKC----GSIDDAKREFLEMPEKNEVSWNAMITG-F--SQHGYALEAINLFEK 687 (968)
Q Consensus 615 a~~~~~~~~~~g~~~~~~~~~~li~~y~k~----g~~~~A~~~f~~~~~~d~~~~~~li~~-~--~~~g~~~~A~~l~~~ 687 (968)
+.| +++...+..|..+|... ++.++|.+.|++....++..+..+... | ...|+.++|++.|++
T Consensus 207 ---------~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~ 276 (452)
T 3e4b_A 207 ---------SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDN 276 (452)
T ss_dssp ---------HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHH
T ss_pred ---------HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 433 22333334444555443 577777777776653355666666665 3 456778888888888
Q ss_pred HHHCCCCCChHHHHHHHHHHcccC-----cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHh
Q 040643 688 MKKHDVMPNHVTFVGVLSACSHVG-----LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQ 758 (968)
Q Consensus 688 m~~~g~~Pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~ 758 (968)
..+.| +......|...|. .| ++++|.++|+... .-+...+..|..+|.. ..++++|.+.+++
T Consensus 277 Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 347 (452)
T 3e4b_A 277 GRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLT 347 (452)
T ss_dssp HHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 77765 4445555555554 44 7888888887653 2235556666666655 3378888888877
Q ss_pred C--CCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 759 M--PIEPDAMVWRTLLSACR----VHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 759 m--~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
. +-.|++. ..|...+. ..+|.+.|...++++.+..+.+ .-..+..+.
T Consensus 348 Aa~~g~~~A~--~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~ 400 (452)
T 3e4b_A 348 AARNGQNSAD--FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLE 400 (452)
T ss_dssp HHTTTCTTHH--HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHH
T ss_pred HHhhChHHHH--HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHH
Confidence 6 2233332 23333333 2457888888888887776533 334444443
No 56
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.26 E-value=1.2e-10 Score=117.56 Aligned_cols=190 Identities=13% Similarity=0.021 Sum_probs=89.1
Q ss_pred CCchhhhhHHHHHHHcCCHHHHHHHHHhCCC---CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHH
Q 040643 528 DDLSIGNALISLYARCGRIQEAYLVFNKIDA---KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVS 604 (968)
Q Consensus 528 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 604 (968)
++...+..+...|.+.|++++|...|++... .+...|..+...|.+.|++++|+..|++..+. .|+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~-------- 72 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRY-------- 72 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC--------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc--------
Confidence 3444555555555555666555555554332 23444555555555555555555555555443 2322
Q ss_pred HHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhc-----------CCHHHHHHHHhcCC--CC-CHHHHHHHHH
Q 040643 605 AAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKC-----------GSIDDAKREFLEMP--EK-NEVSWNAMIT 670 (968)
Q Consensus 605 a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-----------g~~~~A~~~f~~~~--~~-d~~~~~~li~ 670 (968)
...+..+...|.+. |++++|...|++.. .| +...|..+..
T Consensus 73 --------------------------~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 73 --------------------------LGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 22333333333333 55555555555443 22 3445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL 749 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~ 749 (968)
.|...|++++|+..|++.++.. .+...+..+..++...|++++|+..|+...+. .|+ ...+..+..++.+.|++
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~ 201 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKA 201 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC----
T ss_pred HHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCH
Confidence 5555555555555555555533 34445555555555555555555555555432 333 44455555555555555
Q ss_pred HHHHHHHHh
Q 040643 750 SRAREFTEQ 758 (968)
Q Consensus 750 ~eA~~~~~~ 758 (968)
++|.+.+++
T Consensus 202 ~~A~~~~~~ 210 (217)
T 2pl2_A 202 EEAARAAAL 210 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHH
Confidence 555555544
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.24 E-value=8.6e-10 Score=115.85 Aligned_cols=221 Identities=10% Similarity=-0.023 Sum_probs=187.8
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHh----cCCHHHHHHHHhcCC-CCCHHHHHHHHHH
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAK----CGSIDDAKREFLEMP-EKNEVSWNAMITG 671 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k----~g~~~~A~~~f~~~~-~~d~~~~~~li~~ 671 (968)
.++..+-..+...|+.++|...+..+.+ +.+...+..+..+|.. .|++++|.+.|++.. ..+..+|..+...
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 83 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 83 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455666677888999999999999988 3456778889999999 999999999999876 3478899999999
Q ss_pred HHh----cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHH
Q 040643 672 FSQ----HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLL 743 (968)
Q Consensus 672 ~~~----~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l 743 (968)
|.. .|+.++|++.|++..+.+ +...+..+...+.. .|++++|.++|+...+. + +...+..+..+|
T Consensus 84 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 84 YYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLY 156 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHH
Confidence 999 999999999999999865 66788888888888 99999999999988653 3 456677888888
Q ss_pred hh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh----
Q 040643 744 GR----AGCLSRAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA---- 811 (968)
Q Consensus 744 ~r----~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 811 (968)
.+ .|++++|.+.+++.--..+...+..|...+.. .++.+.|....+++++++| +..+..|+.+|..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~ 234 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGV 234 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSS
T ss_pred HcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCc
Confidence 88 99999999999987222456777778888888 8999999999999999977 7789999999999
Q ss_pred cCCcchHHHHHHHHHhCC
Q 040643 812 AGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~~g 829 (968)
.|++++|.+..+...+.|
T Consensus 235 ~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 235 TRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SCCSTTHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHcC
Confidence 999999999877766655
No 58
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.23 E-value=9.6e-11 Score=123.12 Aligned_cols=215 Identities=12% Similarity=0.022 Sum_probs=178.3
Q ss_pred hhhhHHHHHHHHHHHHHhCCC---CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYD---SETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEA 681 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~---~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A 681 (968)
..+++++|...+..+++.... .+..++..+...|...|++++|.+.|+++. ..+...|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 458899999999999885321 246778889999999999999999999876 44788999999999999999999
Q ss_pred HHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-
Q 040643 682 INLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM- 759 (968)
Q Consensus 682 ~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 759 (968)
++.|+++++ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+...+......+.+.|++++|...+++.
T Consensus 97 ~~~~~~al~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 97 YEAFDSVLE--LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHH--HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999 5675 668899999999999999999999998654 576555556666778889999999999765
Q ss_pred C-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC----CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 760 P-IEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE----DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 760 ~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
. ..++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|....+...+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 233444444 666777888889999999999998874 3788999999999999999999987776553
No 59
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=9.1e-11 Score=139.14 Aligned_cols=160 Identities=19% Similarity=0.244 Sum_probs=137.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYAC 738 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~ 738 (968)
+..+|+.|...|.+.|++++|++.|++.++ +.|+ ..++..+..++...|++++|+..|++..+ +.|+ .+.|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 456788888888888888888888888888 7787 45788888888888999999888887754 3676 677888
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
+..+|.+.|++++|.+.+++. .+.|+ ...|..|...+...|+++.|+..++++++++|+++..|..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 889999999999999888876 56776 7889999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 040643 817 CRDQIRQIM 825 (968)
Q Consensus 817 ~a~~~~~~m 825 (968)
+|.+..+..
T Consensus 163 ~A~~~~~ka 171 (723)
T 4gyw_A 163 DYDERMKKL 171 (723)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998865544
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.23 E-value=9.5e-11 Score=131.02 Aligned_cols=193 Identities=15% Similarity=0.068 Sum_probs=115.5
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCC--------------------HHHHHH
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGY--------------------ALEAIN 683 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~ 683 (968)
++..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|++
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 444555556666666666665554431 11 2356666666666666 666666
Q ss_pred HHHHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHH
Q 040643 684 LFEKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRARE 754 (968)
Q Consensus 684 l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~ 754 (968)
.|++..+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...|..++.++.+.|++++|.+
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 66665431 11222 234566666677777777777777665443221222 2356666777777777777777
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHHHHHHHhhcCCcchHHH
Q 040643 755 FTEQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 755 ~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
.+++. +-.++ ..+|..+...+...|+++.|...+++++++.|.. +..+..++.+|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 76654 11112 4456666666777777777777777777765443 4567777888888888888877
Q ss_pred HHHHH
Q 040643 821 IRQIM 825 (968)
Q Consensus 821 ~~~~m 825 (968)
..+..
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65443
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.22 E-value=2.7e-11 Score=135.45 Aligned_cols=171 Identities=11% Similarity=0.044 Sum_probs=118.7
Q ss_pred HHHHHHHHhcCC-------CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC----hHHHHHHHHHHcccCc
Q 040643 647 IDDAKREFLEMP-------EK--NEVSWNAMITGFSQHGYALEAINLFEKMKKHD-VMPN----HVTFVGVLSACSHVGL 712 (968)
Q Consensus 647 ~~~A~~~f~~~~-------~~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd----~~t~~~ll~a~~~~g~ 712 (968)
+++|.+.|++.. .+ ...+|+.+...|...|++++|++.|++..+.. -.++ ..++..+...+...|+
T Consensus 163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 666655555432 11 23467777788888888888888888876521 0112 2267777778888888
Q ss_pred HHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCC
Q 040643 713 VNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVHKN 780 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~ 780 (968)
+++|..+|+...+...-.++ ...+..++.+|.+.|++++|.+.+++. +-.++ ..+|..+...+...|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 88888888876543211111 456777888888889988888888775 11222 5677777788889999
Q ss_pred hhHHHHHHHHHHccCC------CCcchHHHHHHHHhhcCCcch
Q 040643 781 MEIGEYAANHLLELEP------EDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~~~g~~~~ 817 (968)
.+.|...+++++++.+ .....+..|+.+|...|+...
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9999999999988843 345678889999999987643
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.21 E-value=4.5e-11 Score=134.19 Aligned_cols=195 Identities=11% Similarity=-0.014 Sum_probs=128.7
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPE---------KNEVSWNAMITGFSQHGY-----------------ALEAINLF 685 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~~~~g~-----------------~~~A~~l~ 685 (968)
.++..+...|...|++++|.+.|++..+ ....+|..+...|...|+ +++|++.|
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 4455566666666776666666665431 123466667777777777 77777777
Q ss_pred HHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHH
Q 040643 686 EKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFT 756 (968)
Q Consensus 686 ~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~ 756 (968)
++..+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...|..+..+|...|++++|.+.+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 766541 11222 235666677777788888888877766443211111 225677778888888888888777
Q ss_pred HhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHHHHHHHhhcCCcchHHHHH
Q 040643 757 EQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 757 ~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
++. +-.++ ..+|..+...+...|+.+.|...+++++++.|+. ...+..++.+|...|++++|.+..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 765 11111 5566777777888888888888888888875543 347888999999999999998876
Q ss_pred HHHH
Q 040643 823 QIMK 826 (968)
Q Consensus 823 ~~m~ 826 (968)
+...
T Consensus 367 ~~al 370 (411)
T 4a1s_A 367 EQHL 370 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.21 E-value=1.3e-10 Score=125.91 Aligned_cols=257 Identities=16% Similarity=0.115 Sum_probs=162.4
Q ss_pred HHHHhcCChhhHHHHHHHhhhcCCcCCc-----chHHHHHHHHhhhhhHHHHHHHHHHHHHh----CCCC-ChhHHhHHh
Q 040643 569 SGFAQSGYCEGALQVFSQMTQVGVQANL-----YTFGSVVSAAANLANIKQGKQVHAMIIKT----GYDS-ETEASNSLI 638 (968)
Q Consensus 569 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~a~~~~~~~~~a~~~~~~~~~~----g~~~-~~~~~~~li 638 (968)
..+...|++++|+..|++..+. .|+. ..+..+...+...|+++.|...+..+.+. +..+ ...++..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 3344444555555555444443 1221 23333344444445555555544443321 1111 234556666
Q ss_pred hHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGY--------------------ALEAINLFEKMK 689 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~ 689 (968)
..|...|++++|.+.|++..+ ++ ..+|..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766431 22 3367777777777787 888888877765
Q ss_pred HC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-
Q 040643 690 KH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM- 759 (968)
Q Consensus 690 ~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m- 759 (968)
+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...+..++.++.+.|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11222 235667777788888888888888876543211122 336777888888899999888888765
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 760 ---PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 760 ---~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+-.++ ..++..+...+...|+.+.|....++++++.|.. ...+..++.+|...|++++|.+..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11222 5566777777889999999999999998886643 3478899999999999999999776654
Q ss_pred h
Q 040643 827 D 827 (968)
Q Consensus 827 ~ 827 (968)
+
T Consensus 331 ~ 331 (338)
T 3ro2_A 331 E 331 (338)
T ss_dssp H
T ss_pred H
Confidence 4
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.18 E-value=2e-10 Score=112.54 Aligned_cols=166 Identities=14% Similarity=0.069 Sum_probs=143.3
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVL 704 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll 704 (968)
-+..+|..|...|.+.|++++|.+.|++.. +.++.+|..+...|...|++++|+..+++... ..|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHH
Confidence 356788899999999999999999999876 34778999999999999999999999999988 5676 45677777
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM 781 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~ 781 (968)
..+...++++++...+....+. .|+ ...+..+..+|.+.|++++|.+.+++. .+.|+ ..+|..+...+...|+.
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999987653 455 677888999999999999999999887 55665 78899999999999999
Q ss_pred hHHHHHHHHHHccCCCCc
Q 040643 782 EIGEYAANHLLELEPEDS 799 (968)
Q Consensus 782 ~~a~~~~~~~~~l~p~~~ 799 (968)
+.|...++++++++|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999764
No 65
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.16 E-value=5.2e-08 Score=114.04 Aligned_cols=217 Identities=10% Similarity=-0.009 Sum_probs=159.2
Q ss_pred HHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHH-HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC
Q 040643 580 ALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGK-QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP 658 (968)
Q Consensus 580 A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~-~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 658 (968)
+..+|++....- .-+...|.....-+...|+.+.|. .+++.++.. .+.+..++-.++..+-+.|+++.|.++|+++.
T Consensus 328 v~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445666665531 223344445555556667777886 888888864 35567778888888899999999999998765
Q ss_pred C-------------C------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChHHHHHHHHHHcc-cC
Q 040643 659 E-------------K------------NEVSWNAMITGFSQHGYALEAINLFEKMKKH-DVMPNHVTFVGVLSACSH-VG 711 (968)
Q Consensus 659 ~-------------~------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~t~~~ll~a~~~-~g 711 (968)
. | ....|...+....+.|..+.|..+|++.++. + .+....|......-.+ .+
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 2 3 1236888888888899999999999999985 2 1123333322222223 45
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCChhHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP----DAMVWRTLLSACRVHKNMEIGEY 786 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p----~~~~~~~ll~~~~~~g~~~~a~~ 786 (968)
+.+.|.++|+...+.+.-. ...+...++.+...|+.+.|..++++. ...| ...+|..++.--..+|+.+.+..
T Consensus 485 d~e~Ar~ife~~Lk~~p~~--~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 485 DTKTACKVLELGLKYFATD--GEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp CCHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCc--hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 6999999999988774332 444568889899999999999999986 3233 36899999999999999999999
Q ss_pred HHHHHHccCCCCcch
Q 040643 787 AANHLLELEPEDSAT 801 (968)
Q Consensus 787 ~~~~~~~l~p~~~~~ 801 (968)
+.+++.+..|+++..
T Consensus 563 v~~R~~~~~P~~~~~ 577 (679)
T 4e6h_A 563 LEKRFFEKFPEVNKL 577 (679)
T ss_dssp HHHHHHHHSTTCCHH
T ss_pred HHHHHHHhCCCCcHH
Confidence 999999999987644
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.15 E-value=2.2e-09 Score=114.95 Aligned_cols=216 Identities=10% Similarity=0.055 Sum_probs=154.7
Q ss_pred hhHHHHHHHhhhcCCcCCc-chHHHHHHHHh-------hhhhH-------HHHHHHHHHHHHhCCCCChhHHhHHhhHHH
Q 040643 578 EGALQVFSQMTQVGVQANL-YTFGSVVSAAA-------NLANI-------KQGKQVHAMIIKTGYDSETEASNSLITLYA 642 (968)
Q Consensus 578 ~~A~~l~~~m~~~g~~p~~-~t~~~ll~a~~-------~~~~~-------~~a~~~~~~~~~~g~~~~~~~~~~li~~y~ 642 (968)
++|+..|++.... .|+. ..|..+...+. ..|+. ++|..+++.+++.-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4566666666553 3333 23333333332 23553 777777777776322345667888888888
Q ss_pred hcCCHHHHHHHHhcCC--CC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHc-ccCcHHHH
Q 040643 643 KCGSIDDAKREFLEMP--EK-NEV-SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACS-HVGLVNEG 716 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~--~~-d~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~-~~g~~~~a 716 (968)
+.|++++|.++|+++. .| +.. .|..++..+.+.|+.++|.++|++.++ ..|+ ...|........ ..|++++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999988765 33 343 788888888889999999999999888 4454 334544433322 36899999
Q ss_pred HHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 717 LRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PIEP--DAMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 717 ~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p--~~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
..+|+...+. .|+ ...|..+++.+.+.|++++|..++++. ++.| ...+|..++.....+|+.+.|..+.+
T Consensus 189 ~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 189 FKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999887664 343 677888888888999999999988886 2455 37788888888888999999999999
Q ss_pred HHHccCCCCcc
Q 040643 790 HLLELEPEDSA 800 (968)
Q Consensus 790 ~~~~l~p~~~~ 800 (968)
+++++.|+++.
T Consensus 266 ~a~~~~p~~~~ 276 (308)
T 2ond_A 266 RRFTAFREEYE 276 (308)
T ss_dssp HHHHHTTTTTS
T ss_pred HHHHHcccccc
Confidence 99999997653
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.15 E-value=2.2e-08 Score=117.25 Aligned_cols=141 Identities=10% Similarity=-0.018 Sum_probs=97.1
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCC--C-CcccHHHHHHHHHcCCC---hhHHHHHHHHhhcc
Q 040643 236 FHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQ--R-DGVTYNSLISGLAQCGY---SDKALELFEKMQLD 309 (968)
Q Consensus 236 ~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~--~-~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~ 309 (968)
.+...+... +.|...|..++..+.+.+.++.++.+|+++.. | ....|..-+..-.+.|. .+.+..+|++-...
T Consensus 54 ~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~ 132 (679)
T 4e6h_A 54 KLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK 132 (679)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred HHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence 344444444 46888999999999999999999999998864 3 45578888888888888 99999999998876
Q ss_pred c-cCCCcccHHHHHHHHhccCCh--------HHHHHHHHHHHHh-CC-CCC-hhhHhHHHHHHHh---------cCChhH
Q 040643 310 C-LKPDCVTVASLVSACASVGAF--------RTGEQLHSYAIKV-GI-SKD-IIVEGSMLDLYVK---------CSDVET 368 (968)
Q Consensus 310 g-~~p~~~t~~~ll~a~~~~~~~--------~~a~~~~~~~~~~-g~-~~~-~~~~~~Li~~y~~---------~g~~~~ 368 (968)
. ..|+...|..-+.-..+.++. +...++|+.++.. |. .++ ..+|...+..... .++++.
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~ 212 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY 212 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence 4 246766666666655444432 3455777776653 66 554 4677777766543 334667
Q ss_pred HHHHHhhCC
Q 040643 369 AYKFFLTTE 377 (968)
Q Consensus 369 A~~~f~~~~ 377 (968)
++++|++..
T Consensus 213 ~R~iy~raL 221 (679)
T 4e6h_A 213 IRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 777777655
No 68
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.13 E-value=1.2e-10 Score=130.66 Aligned_cols=259 Identities=12% Similarity=0.061 Sum_probs=164.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCC--C-Cc----ccHHHHHHHHHhcCChhhHHHHHHHhhhc----CCcC-CcchHHHHH
Q 040643 536 LISLYARCGRIQEAYLVFNKIDA--K-DN----ISWNGLISGFAQSGYCEGALQVFSQMTQV----GVQA-NLYTFGSVV 603 (968)
Q Consensus 536 Li~~y~k~g~~~~A~~~f~~m~~--~-d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll 603 (968)
+...|...|++++|...|++... + +. ..|..+...|...|++++|+..|++.... +-.| ...++..+.
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 44445555556655555554331 1 21 24555555556666666666655554432 1111 123344444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh----CC-CCChhHHhHHhhHHHhcCC-----------------HHHHHHHHhcCCC--
Q 040643 604 SAAANLANIKQGKQVHAMIIKT----GY-DSETEASNSLITLYAKCGS-----------------IDDAKREFLEMPE-- 659 (968)
Q Consensus 604 ~a~~~~~~~~~a~~~~~~~~~~----g~-~~~~~~~~~li~~y~k~g~-----------------~~~A~~~f~~~~~-- 659 (968)
..+...|++++|...+..+++. +- +....++..+...|...|+ +++|.+.|++..+
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 5555566666666665554432 11 1123455666677777777 7777776665431
Q ss_pred -----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C----hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 660 -----K--NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMP---N----HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 660 -----~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P---d----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+ ...+|..+...|...|++++|++.|++..+ +.| + ..++..+...+...|++++|..+|+....
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLR--IAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH--HHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 1 234777888888888999999998888876 222 2 12677788888899999999999887654
Q ss_pred hcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHc
Q 040643 726 EYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM-PI---EPD----AMVWRTLLSACRVHKNMEIGEYAANHLLE 793 (968)
Q Consensus 726 ~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~---~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 793 (968)
...-..+ ...+..+..++.+.|++++|.+.+++. .+ .++ ..++..+...+...|+.+.|...++++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3221111 456778888999999999999888876 11 122 45677777888999999999999999998
Q ss_pred cCC
Q 040643 794 LEP 796 (968)
Q Consensus 794 l~p 796 (968)
+.+
T Consensus 372 ~~~ 374 (411)
T 4a1s_A 372 LAX 374 (411)
T ss_dssp HCC
T ss_pred HHh
Confidence 876
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.11 E-value=1.1e-09 Score=111.37 Aligned_cols=204 Identities=9% Similarity=0.063 Sum_probs=128.1
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--C-CCHHHHHHHHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--E-KNEVSWNAMITGF 672 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~-~d~~~~~~li~~~ 672 (968)
...+...-..+...|++++|...+..+++..-+++...+..+...|.+.|++++|.+.|++.. . .+...|..+...|
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 86 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 345555555666777777777777777765533555555556777777777777777777654 2 2455677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh--------HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPNH--------VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVD 741 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd~--------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~ 741 (968)
...|++++|++.|++.++ +.|+. ..+..+...+...|++++|.++|+... .+.|+ ...|..+..
T Consensus 87 ~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIK--AVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHHHH
Confidence 777777777777777776 45543 235555566666777777777777654 33454 445555666
Q ss_pred HHhhcCCh--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 742 LLGRAGCL--SRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 742 ~l~r~G~~--~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
+|...|+. ++|..+. ..+...+..+. ....++++.|....+++++++|++......|+.+...
T Consensus 162 ~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 162 LFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 66555443 2222221 11122222222 2344556999999999999999999999888887654
No 70
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.11 E-value=6.4e-10 Score=120.34 Aligned_cols=276 Identities=9% Similarity=0.028 Sum_probs=140.2
Q ss_pred eHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHH
Q 040643 462 SWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYA 541 (968)
Q Consensus 462 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 541 (968)
.+......+...|++++|+..|++..+. .|+.... -..++..+...|.
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~------------------------------~~~~~~~l~~~~~ 54 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKT------------------------------LSAIYSQLGNAYF 54 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHH------------------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHH------------------------------HHHHHHHHHHHHH
Confidence 3445567788899999999999998875 3332110 0122344555566
Q ss_pred HcCCHHHHHHHHHhCCC---------CCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc-CC----cchHHHHHHHHh
Q 040643 542 RCGRIQEAYLVFNKIDA---------KDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ-AN----LYTFGSVVSAAA 607 (968)
Q Consensus 542 k~g~~~~A~~~f~~m~~---------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~a~~ 607 (968)
..|++++|...|++... ....+|..+...|...|++++|+..|.+..+.... ++ ..++..+...+.
T Consensus 55 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 55 YLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 66666666666554321 02335666777777777777777777776542111 11 124444444555
Q ss_pred hhhh--------------------HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC--CHHHH
Q 040643 608 NLAN--------------------IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK--NEVSW 665 (968)
Q Consensus 608 ~~~~--------------------~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~--d~~~~ 665 (968)
..|+ +++|...+....+. +.....+ ...+|
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~ 186 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAF 186 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHH
Confidence 5555 55555554443321 0000000 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchH
Q 040643 666 NAMITGFSQHGYALEAINLFEKMKKHDV-MPN----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHY 736 (968)
Q Consensus 666 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~Pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y 736 (968)
..+...|...|++++|++.|++..+..- .++ ..++..+...+...|++++|..+|+...+...-.++ ...+
T Consensus 187 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 266 (338)
T 3ro2_A 187 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSC 266 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHH
Confidence 4444444444555555555444443100 001 113444444555555555555555544322111111 3345
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
..+..++.+.|++++|.+.+++. +-.++ ..+|..+...+...|+.+.|...+++++++.++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 267 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 55556666666666666555544 11111 445666666777778888888888887777654
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.07 E-value=3e-09 Score=113.86 Aligned_cols=210 Identities=8% Similarity=-0.035 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhHHhhHHH-------hcCCH-------HHHHHHHhcCC---CC-CHHHHHHHHHHHHh
Q 040643 613 KQGKQVHAMIIKTGYDSETEASNSLITLYA-------KCGSI-------DDAKREFLEMP---EK-NEVSWNAMITGFSQ 674 (968)
Q Consensus 613 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~-------k~g~~-------~~A~~~f~~~~---~~-d~~~~~~li~~~~~ 674 (968)
+++..+++.+++.. +.++.+|..++..+. +.|++ ++|..+|++.. .| +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777787777753 556778888887775 35886 99999999754 23 66799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHh-hcCChH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLG-RAGCLS 750 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~-r~G~~~ 750 (968)
.|+.++|.++|++.++ +.|+.. .|..+...+...|.+++|..+|++..+ ..|. ...|...+.+.. ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 788643 788899999999999999999998864 3444 444444443322 379999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHcc---CCC-CcchHHHHHHHHhhcCCcchHHHHHHH
Q 040643 751 RAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLEL---EPE-DSATYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 751 eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
+|.+++++. ...| +...|..++..+...|+.+.|..+++++++. .|+ +...|..+++.+...|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999987 3334 4889999999999999999999999999996 554 667888999999999999999998777
Q ss_pred HHhC
Q 040643 825 MKDR 828 (968)
Q Consensus 825 m~~~ 828 (968)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=124.45 Aligned_cols=169 Identities=14% Similarity=0.071 Sum_probs=77.4
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMPE----------K-NEVSWNAMITGFSQHGYALEAINLFEKMKKH------DVM 694 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~ 694 (968)
.++..+...|...|++++|.+.|+++.+ + ...+|..+...|...|++++|++.|+++.+. +-.
T Consensus 112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3444555555555555555555554331 1 2334556666666666666666666666552 113
Q ss_pred CCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhc------CCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHH
Q 040643 695 PNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEY------GLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMV 767 (968)
Q Consensus 695 Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~ 767 (968)
|+. .++..+...+...|++++|.++|+.+.+.. ...|........ ...
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~-------------------------~~~ 246 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH-------------------------AEE 246 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------------HHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------------HHH
Confidence 332 245555556666666666666666554320 011111110000 111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+..+.......+.++.+....+++.+..|.++..+..|+.+|...|++++|.+..+..
T Consensus 247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2222222333445555555666666666666666777777777777777776654433
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.07 E-value=1.3e-10 Score=124.42 Aligned_cols=171 Identities=15% Similarity=0.141 Sum_probs=104.4
Q ss_pred cccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 561 NISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 561 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
..+|..+...|...|++++|+.+|+++.+..-. ......+....++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEK----------------------------TSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------------------HHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------------HcCCCCHHHHHHHHHHHHH
Confidence 346777788888888888888888776642000 0000011123344555566
Q ss_pred HHhcCCHHHHHHHHhcCCC----------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-hHHHHH
Q 040643 641 YAKCGSIDDAKREFLEMPE----------K-NEVSWNAMITGFSQHGYALEAINLFEKMKKH------DVMPN-HVTFVG 702 (968)
Q Consensus 641 y~k~g~~~~A~~~f~~~~~----------~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd-~~t~~~ 702 (968)
|...|++++|.+.|++... + ...+|..+...|...|++++|++.|+++.+. +-.|+ ...+..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6666666666666655431 1 3456777888888888888888888887763 22343 335667
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcC-----CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYG-----LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~-----i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
+...+...|++++|.++|+.+.+... -.|. ...+..++.+|.+.|++++|.+.++++
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 77778888888888888877654311 1222 344556666666666666666666553
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.06 E-value=2.7e-09 Score=104.06 Aligned_cols=157 Identities=11% Similarity=-0.023 Sum_probs=92.8
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHccc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHV 710 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~ 710 (968)
+..+...|...|++++|.+.|+++.+ .+...|..+...|...|++++|++.|+++.+ ..|+
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~-------------- 74 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--DAPD-------------- 74 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTT--------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC--------------
Confidence 34444455555555555555555441 2344455555555555555555555555544 2332
Q ss_pred CcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCChhHHHHHH
Q 040643 711 GLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIE-PDAMVWRTLLSACRVHKNMEIGEYAA 788 (968)
Q Consensus 711 g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~ 788 (968)
+...+..++.++.+.|++++|.+.++++ ... .+..+|..+...+...|+.+.|...+
T Consensus 75 ---------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 75 ---------------------NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 2334444555555555555555555544 122 23566666666777777777788888
Q ss_pred HHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 789 NHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 789 ~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+++++..|+++..+..++.+|...|++++|.+..+...+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888888888888776655543
No 75
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.06 E-value=4e-09 Score=116.95 Aligned_cols=225 Identities=9% Similarity=0.017 Sum_probs=120.4
Q ss_pred HHHhcCChhhHHHHHHHhhhcC-CcCC----cchHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCC----CChhHHhHHh
Q 040643 570 GFAQSGYCEGALQVFSQMTQVG-VQAN----LYTFGSVVSAAANLANIKQGKQVHAMIIKT--GYD----SETEASNSLI 638 (968)
Q Consensus 570 ~~~~~g~~~~A~~l~~~m~~~g-~~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~----~~~~~~~~li 638 (968)
.+...|++++|+..|++....- -.|| ..++..+-..+...|+.+.|...+..+++. ... ....+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 3444455555555555443320 0111 123344444445555555555555444431 110 0123456666
Q ss_pred hHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKH----DVMPN-HVTFVGVL 704 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll 704 (968)
..|...|++++|.+.|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +..|+ ..++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 777777777777777766541 11 236777777888888888888888777652 22244 34677777
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHHh
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGRAGC---LSRAREFTEQMPIEPD-AMVWRTLLSACRV 777 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~G~---~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~ 777 (968)
..+...|++++|..+|+...+...-.++ ...+..+..++...|+ +++|.+++++.+..|+ ..++..|...+..
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~ 351 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHE 351 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 7777888888888877765432111111 2234556666666666 6666666666543333 2233333334444
Q ss_pred cCChhHHHHHHHHHHcc
Q 040643 778 HKNMEIGEYAANHLLEL 794 (968)
Q Consensus 778 ~g~~~~a~~~~~~~~~l 794 (968)
.|+.+.|....++++++
T Consensus 352 ~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 352 RKNFQKASAYFLKVEQV 368 (383)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 44444444444444443
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.04 E-value=1.4e-09 Score=123.99 Aligned_cols=176 Identities=9% Similarity=-0.025 Sum_probs=154.4
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHH
Q 040643 647 IDDAKREFLEMP---EKNEVSWNAMITGFSQHGYA-LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFE 721 (968)
Q Consensus 647 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~ 721 (968)
+++|.+.++... ..+...|..+...|...|++ ++|++.|++.++ ..|+ ...+..+..++...|++++|.++|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 556666666543 34788999999999999999 999999999999 6786 5689999999999999999999999
Q ss_pred HhhhhcCCCCCcchHHHHHHHHhhc---------CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc--------CChh
Q 040643 722 SMSTEYGLVPKPEHYACVVDLLGRA---------GCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH--------KNME 782 (968)
Q Consensus 722 ~m~~~~~i~p~~~~y~~lv~~l~r~---------G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~--------g~~~ 782 (968)
... .+.|+...+..+..+|.+. |++++|.+.+++. ...|+ ...|..|..++... |+++
T Consensus 162 ~al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GAL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 885 4578888899999999999 9999999999987 55665 88899998888888 9999
Q ss_pred HHHHHHHHHHccCC---CCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 783 IGEYAANHLLELEP---EDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|...++++++++| +++..|..++.+|...|++++|.+..+...+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999997666544
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.03 E-value=3e-09 Score=108.20 Aligned_cols=186 Identities=13% Similarity=0.025 Sum_probs=97.4
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---E-KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVL 704 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll 704 (968)
|+..+..+...|.+.|++++|.+.|++.. + ++...|..+...|...|++++|++.|++.++ ..|+. ..+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHH
Confidence 34455555556666666666666666543 2 4555555566666666666666666666665 45543 3455555
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC-c-------chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHH
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK-P-------EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD---AMVWRTLL 772 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~-------~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~---~~~~~~ll 772 (968)
.++...|++++|...|+...+. .|+ . ..|..+...+.+.|++++|.+.+++. ...|+ ...|..+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 5666666666666666655433 333 2 33455555555555555555555554 34444 23333333
Q ss_pred HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 773 SACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 773 ~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+. ..+....+++..+.+.+...|. .......|.+++|....+...+
T Consensus 161 ~~~~-----~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~ 208 (228)
T 4i17_A 161 VLFY-----NNGADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVT 208 (228)
T ss_dssp HHHH-----HHHHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhh
Confidence 3332 2334444555555554433332 2233344455788776555443
No 78
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.00 E-value=6.5e-09 Score=101.28 Aligned_cols=168 Identities=14% Similarity=0.071 Sum_probs=127.0
Q ss_pred chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHH
Q 040643 597 YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFS 673 (968)
Q Consensus 597 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~ 673 (968)
..+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|+++. ..+...|..+...|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566677888999999999998877643 3467788999999999999999999999875 447788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHH
Q 040643 674 QHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRA 752 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA 752 (968)
..|++++|++.|+++.+ ..|+ ...+..+..++...|++++|..+|+.+.+. .|
T Consensus 88 ~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~--------------------- 141 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---RP--------------------- 141 (186)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT---------------------
T ss_pred HhcCHHHHHHHHHHHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---Cc---------------------
Confidence 99999999999999988 4554 456667777777777777777777766433 12
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 753 REFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 753 ~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
.+..+|..+...+...|+.+.|....++++++.|+++..
T Consensus 142 ----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 142 ----------NEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVE 180 (186)
T ss_dssp ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGG
T ss_pred ----------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhh
Confidence 124455556666666677777777777777777766543
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.99 E-value=3.2e-09 Score=117.72 Aligned_cols=222 Identities=9% Similarity=0.003 Sum_probs=167.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHh--CCCC---ChhHHhHHhhHHHhcCCHHHHHHHHhcCC-----CCC-----HHHHHH
Q 040643 603 VSAAANLANIKQGKQVHAMIIKT--GYDS---ETEASNSLITLYAKCGSIDDAKREFLEMP-----EKN-----EVSWNA 667 (968)
Q Consensus 603 l~a~~~~~~~~~a~~~~~~~~~~--g~~~---~~~~~~~li~~y~k~g~~~~A~~~f~~~~-----~~d-----~~~~~~ 667 (968)
-..+...|++++|...+..+.+. ..+. ...++..+...|...|++++|.+.|++.. .++ ..+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34567789999999999998773 1122 24678889999999999999998888754 122 357889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc---CCCCC-cchHHH
Q 040643 668 MITGFSQHGYALEAINLFEKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY---GLVPK-PEHYAC 738 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~-~~~y~~ 738 (968)
+...|...|++++|++.|++.++. +-.|. ..++..+...+...|++++|.++|+...+.. +..|. ...+..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 999999999999999999998862 11111 2378889999999999999999999875521 22243 667888
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PI-----EPD-AMVWRTLLSACRVHKN---MEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~-----~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
+..++.+.|++++|.+.+++. .+ .|. ...+..|...+...|+ .+.|...+++. ...|.....+..|+.+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHH
Confidence 999999999999999999886 11 232 2234555555777788 66777777666 4445566788899999
Q ss_pred HhhcCCcchHHHHHHHH
Q 040643 809 YAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 809 y~~~g~~~~a~~~~~~m 825 (968)
|...|++++|.+..+..
T Consensus 349 y~~~g~~~~A~~~~~~a 365 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKV 365 (383)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 99999999999975554
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.96 E-value=7.8e-08 Score=105.99 Aligned_cols=192 Identities=13% Similarity=0.003 Sum_probs=120.0
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC-------C---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C-C-hH
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMP-------E---K-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM--P-N-HV 698 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~-------~---~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--P-d-~~ 698 (968)
...+...|...|++++|.+.|++.. . | ....+..+...|...|++++|...+++..+..-. | + ..
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 3445566666777777766666543 1 1 1235556667777778888888888777652211 1 1 23
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH-----HHHHHHhhcCChHHHHHHHHhC-CCCCC-----HHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA-----CVVDLLGRAGCLSRAREFTEQM-PIEPD-----AMV 767 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~-----~lv~~l~r~G~~~eA~~~~~~m-~~~p~-----~~~ 767 (968)
++..+...+...|++++|..+++.......-......+. ..+.++.+.|++++|.+.+++. ...|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 456666677778888888888877654321111111111 2334466788888888888776 22221 334
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHccCCCCc------chHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 768 WRTLLSACRVHKNMEIGEYAANHLLELEPEDS------ATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~------~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+..+...+...|+.+.|...++++++..+... ..+..++.+|...|++++|....+..
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 55666677778888888888888877654321 36777888999999999998865544
No 81
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.95 E-value=2.5e-09 Score=126.74 Aligned_cols=163 Identities=12% Similarity=0.195 Sum_probs=143.3
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...++.|...|.+.|++++|.+.|++.. .| +..+|+.+...|.+.|++++|++.|++.++ +.|+ ...+..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 46678889999999999999999999876 34 678999999999999999999999999998 7887 458999999
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChh
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNME 782 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~ 782 (968)
++...|++++|++.|++..+ +.|+ .+.|..+..+|.+.|++++|++.+++. .+.|+ ...|..|...+...|+.+
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 99999999999999998764 4676 778999999999999999999999987 67776 788999999999999999
Q ss_pred HHHHHHHHHHccCCC
Q 040643 783 IGEYAANHLLELEPE 797 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~ 797 (968)
.|+...++++++.|+
T Consensus 163 ~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 163 DYDERMKKLVSIVAD 177 (723)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChh
Confidence 999999999988664
No 82
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.90 E-value=1.6e-09 Score=101.95 Aligned_cols=134 Identities=10% Similarity=0.039 Sum_probs=79.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~ 753 (968)
|+.++|++.+++... ..|+ ...+..+...|...|++++|.++|++..+ +.|+ ...|..+..+|.+.|++++|.
T Consensus 11 ~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~---~~p~~~~a~~~lg~~~~~~~~~~~A~ 85 (150)
T 4ga2_A 11 ADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN---VQERDPKAHRFLGLLYELEENTDKAV 85 (150)
T ss_dssp HHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCchHHHH
Confidence 344444444444433 2332 22334444444444444444444444432 1333 444555555555555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHH-HHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 754 EFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGE-YAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 754 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~-~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
..+++. .+.|+ ..+|..+...+...|+.+.|. ...+++++++|+++..|.+.+.++...|+
T Consensus 86 ~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 86 ECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 555554 34554 667777777888888876544 45699999999999999999999988885
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.86 E-value=6.7e-08 Score=100.51 Aligned_cols=202 Identities=11% Similarity=0.051 Sum_probs=123.0
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hHHH
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMP--EK-N---EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN----HVTF 700 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd----~~t~ 700 (968)
...+-.+...+.+.|++++|...|+++. .| + ...|..+...|...|++++|+..|++.++ ..|+ ...+
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~ 92 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQ--IYQIDPRVPQAE 92 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHH--HCCCCchhHHHH
Confidence 3444455555666666666666666554 22 2 44555666666666666666666666665 3342 1234
Q ss_pred HHHHHHHcc--------cCcHHHHHHHHHHhhhhcCCCCCc-chHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 040643 701 VGVLSACSH--------VGLVNEGLRYFESMSTEYGLVPKP-EHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTL 771 (968)
Q Consensus 701 ~~ll~a~~~--------~g~~~~a~~~~~~m~~~~~i~p~~-~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~l 771 (968)
..+..++.. .|++++|...|+...+.+ |+. .....+..+....+.+ ...+..+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 444445555 666666666666554432 321 1111111110000000 1113456
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhc----------CCcchHHHHHHHHHhCCCccCCcccE
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAA----------GKWDCRDQIRQIMKDRGVKKEPGQSW 838 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~g~~k~~g~s~ 838 (968)
...+...|+++.|...++++++..|+++ ..+..++.+|... |++++|....+...+.
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~---------- 224 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI---------- 224 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH----------
Confidence 6678899999999999999999999854 5889999999977 8999999987766542
Q ss_pred EEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHc
Q 040643 839 IEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEI 875 (968)
Q Consensus 839 i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~ 875 (968)
+..+|...+....+.++..++.+.
T Consensus 225 -------------~p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 225 -------------FPDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp -------------CTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCCChHHHHHHHHHHHHHHHHHHh
Confidence 123577777888888887777653
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.85 E-value=1e-08 Score=107.70 Aligned_cols=219 Identities=12% Similarity=0.124 Sum_probs=152.5
Q ss_pred hhhhHHHHHHHHHHHHHh-------CCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-CHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKT-------GYDSETEASNSLITLYAKCGSIDDAKREFLEMPE----------K-NEVSWNAMI 669 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~-------g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~-d~~~~~~li 669 (968)
..|++++|...+..+++. ..+....++..+...|...|++++|...|+++.+ | ...+|+.+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 455666666666555442 2223466788899999999999999999987641 2 345788999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc-----CCCCC-cchH
Q 040643 670 TGFSQHGYALEAINLFEKMKKH------DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY-----GLVPK-PEHY 736 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~i~p~-~~~y 736 (968)
..|...|++++|++.|++..+. .-.|+ ..++..+...+...|++++|..+|+...+.. +-.|. ...+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999999999873 11344 4578888889999999999999999886541 11232 5678
Q ss_pred HHHHHHHhhcCChHHHHHHHHhC----------CCCCC-HHHHHHHHHHHHhcCC------hhHHHHHHHHHHccCCCCc
Q 040643 737 ACVVDLLGRAGCLSRAREFTEQM----------PIEPD-AMVWRTLLSACRVHKN------MEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 737 ~~lv~~l~r~G~~~eA~~~~~~m----------~~~p~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~l~p~~~ 799 (968)
..+..++.+.|++++|.+++++. ...|. ...|..+.......+. +..+....+.+....|..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 88999999999999999998875 12333 3444444433433332 2233333333334456677
Q ss_pred chHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
..+..|+.+|...|++++|.+..+...
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 789999999999999999999876543
No 85
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.85 E-value=1.2e-07 Score=104.63 Aligned_cols=226 Identities=10% Similarity=0.031 Sum_probs=128.2
Q ss_pred HHHHHhcCChhhHHHHHHHhhhcCC-cCC----cchHHHHHHHHhhhhhHHHHHHHHHHHHHh--CCC---C-ChhHHhH
Q 040643 568 ISGFAQSGYCEGALQVFSQMTQVGV-QAN----LYTFGSVVSAAANLANIKQGKQVHAMIIKT--GYD---S-ETEASNS 636 (968)
Q Consensus 568 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~--g~~---~-~~~~~~~ 636 (968)
...+...|++++|+..|++....-. .++ ..++..+-..+...|+.+.|...+..+++. ... + ...+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3344556666666666666554311 122 234445555666666777666666655542 111 1 1345566
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC-hHHHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKHD---VMPN-HVTFVGV 703 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~Pd-~~t~~~l 703 (968)
+...|...|++++|.+.|++..+ ++ ..+++.+...|...|++++|++.|++..+.. ..|+ ..++..+
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 267 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL 267 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence 77777777887777777766441 12 2466777777888888888888888776510 1233 4466677
Q ss_pred HHHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhhcCC---hHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 040643 704 LSACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGRAGC---LSRAREFTEQMPIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 704 l~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~G~---~~eA~~~~~~m~~~p~-~~~~~~ll~~~~ 776 (968)
...+.+.|++++|..+|++..+...-.++ ...+..+..++...|+ +++|.+++++....|+ ...+..|...+.
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~ 347 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFE 347 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHH
Confidence 77777888888888888776554322222 2344555556666666 6666666666543333 223333333344
Q ss_pred hcCChhHHHHHHHHHHc
Q 040643 777 VHKNMEIGEYAANHLLE 793 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~ 793 (968)
..|+.+.|....+++++
T Consensus 348 ~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 348 SSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 45555555444444433
No 86
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.84 E-value=4.9e-08 Score=107.86 Aligned_cols=297 Identities=9% Similarity=0.011 Sum_probs=195.9
Q ss_pred CCchhhhhHHHHH--HHcCCHHHHHHHHHhCCC--------CCcccHHHHHHH--HHhcCChhhHH---------HHHHH
Q 040643 528 DDLSIGNALISLY--ARCGRIQEAYLVFNKIDA--------KDNISWNGLISG--FAQSGYCEGAL---------QVFSQ 586 (968)
Q Consensus 528 ~~~~~~~~Li~~y--~k~g~~~~A~~~f~~m~~--------~d~~~~~~li~~--~~~~g~~~~A~---------~l~~~ 586 (968)
|+..+.+.|-+-| .+.+++++|..+++++.. .++..|-.++.. ....+..+.+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4455666666666 778888888888775432 123333333322 11112222222 55555
Q ss_pred hhhcCCcCCc-ch---HHHHHHHHhhhhhHHHHHHHHHHHHHhCC-CC----ChhHHhHHhhHHHhcCCHHHHHHHHhcC
Q 040643 587 MTQVGVQANL-YT---FGSVVSAAANLANIKQGKQVHAMIIKTGY-DS----ETEASNSLITLYAKCGSIDDAKREFLEM 657 (968)
Q Consensus 587 m~~~g~~p~~-~t---~~~ll~a~~~~~~~~~a~~~~~~~~~~g~-~~----~~~~~~~li~~y~k~g~~~~A~~~f~~~ 657 (968)
+.......+. .. +...-..+...|+.++|...+..+.+..- .+ ...++..+...|...|+++.|...+++.
T Consensus 88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a 167 (378)
T 3q15_A 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA 167 (378)
T ss_dssp HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 5432211111 11 11222345678999999999998876321 12 2457778889999999999998888765
Q ss_pred C-----CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHH
Q 040643 658 P-----EK-----NEVSWNAMITGFSQHGYALEAINLFEKMKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFES 722 (968)
Q Consensus 658 ~-----~~-----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~ 722 (968)
. .+ ...+++.+...|...|++++|++.|++.++. |-.+. ..++..+...+...|++++|.++|+.
T Consensus 168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4 11 2457889999999999999999999998762 11111 24678888899999999999999998
Q ss_pred hhhhcC--CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---hhHHHHHHH
Q 040643 723 MSTEYG--LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM----PI--EPD-AMVWRTLLSACRVHKN---MEIGEYAAN 789 (968)
Q Consensus 723 m~~~~~--i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~--~p~-~~~~~~ll~~~~~~g~---~~~a~~~~~ 789 (968)
..+... ..|. ...+..++.++.+.|++++|.+.+++. +- .|. ...+..|...+...++ ++.|...++
T Consensus 248 al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~ 327 (378)
T 3q15_A 248 AAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFE 327 (378)
T ss_dssp HHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 765211 1233 667888999999999999999999876 21 333 3344444444666777 666666665
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
+ ....|.....+..|+.+|...|++++|.+..+..
T Consensus 328 ~-~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~a 362 (378)
T 3q15_A 328 K-KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKV 362 (378)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred h-CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5 2233455667889999999999999999875544
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=5.6e-08 Score=102.99 Aligned_cols=183 Identities=9% Similarity=0.051 Sum_probs=123.2
Q ss_pred hHHHhcCCHHHHHHHHhcCCC-------C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------hHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMPE-------K--NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-------HVTFVG 702 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~~-------~--d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-------~~t~~~ 702 (968)
..|...|++++|.+.|++..+ + ...+|+.+...|...|++++|+..|++.++ +.|+ ..++..
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~--l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ--IFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HHHHcCCHHHHHHHHHH
Confidence 346667777777777765431 1 145788888888888888888888888876 3331 236777
Q ss_pred HHHHHccc-CcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---H-----HHH
Q 040643 703 VLSACSHV-GLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD---A-----MVW 768 (968)
Q Consensus 703 ll~a~~~~-g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~---~-----~~~ 768 (968)
+..++... |++++|+.+|++..+.+.-..+ ...|..++.+|.+.|++++|.+.+++. ...|+ . ..|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 88888886 9999999999877553211111 345778889999999999999998876 22332 1 145
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcch-----HHHHHHHHh--hcCCcchHHHHHH
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSAT-----YVLLSNIYA--AAGKWDCRDQIRQ 823 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~ 823 (968)
..+...+...|+++.|....+++++++|+.... +..|...|. ..++|++|.+..+
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~ 264 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD 264 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence 666666788899999999999999999986653 334555554 4456777666543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.80 E-value=3.9e-08 Score=104.23 Aligned_cols=217 Identities=10% Similarity=-0.011 Sum_probs=121.0
Q ss_pred CHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhc----CCcCC-cchHHHHHHHHhhhhhHHHHHHHH
Q 040643 545 RIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQV----GVQAN-LYTFGSVVSAAANLANIKQGKQVH 619 (968)
Q Consensus 545 ~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~a~~~~~~~~~a~~~~ 619 (968)
++++|...|++. ...|...|++++|++.|.+.... |-.++ ..++..+-.++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477887776654 66777888888888888776542 11111 223344444444444444444444
Q ss_pred HHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCC--
Q 040643 620 AMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH-GYALEAINLFEKMKKHDVMPN-- 696 (968)
Q Consensus 620 ~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~Pd-- 696 (968)
..+++. +.+.|+...+ ..+|+.+...|... |++++|+..|++.++ +.|+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~--~~~~~~ 152 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGE--WYAQDQ 152 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HHHHTT
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH--HHHhCC
Confidence 433321 0011111111 23566677777775 777777777777766 3332
Q ss_pred -----hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----chHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 040643 697 -----HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-----EHYACVVDLLGRAGCLSRAREFTEQM-PIEPDA 765 (968)
Q Consensus 697 -----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~ 765 (968)
..++..+...+...|++++|..+|+...+...-.+.. ..|..++.++...|++++|...+++. .+.|+.
T Consensus 153 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2356667777777777777777777765431111111 13556667777778888888777776 444541
Q ss_pred ------HHHHHHHHHHH--hcCChhHHHHHHHHHHccCCCCcc
Q 040643 766 ------MVWRTLLSACR--VHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 766 ------~~~~~ll~~~~--~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
..+..|+.++. ..++++.|....+++++++|.+..
T Consensus 233 ~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~ 275 (292)
T 1qqe_A 233 ADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKIT 275 (292)
T ss_dssp -----HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHH
Confidence 12344455553 334566666666777777775543
No 89
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.79 E-value=6.4e-07 Score=98.57 Aligned_cols=258 Identities=9% Similarity=-0.036 Sum_probs=158.5
Q ss_pred HHHHHHcCCHHHHHHHHHhCC----CCCc----ccHHHHHHHHHhcCChhhHHHHHHHhhhcCCc-CCc----chHHHHH
Q 040643 537 ISLYARCGRIQEAYLVFNKID----AKDN----ISWNGLISGFAQSGYCEGALQVFSQMTQVGVQ-ANL----YTFGSVV 603 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~----~~d~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~----~t~~~ll 603 (968)
...+...|++++|...+++.. ..+. .+++.+...|...|++++|...+++.....-. ++. .++..+-
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 334555666666666655421 1121 13455556666677777777777665542111 111 1233444
Q ss_pred HHHhhhhhHHHHHHHHHHHHHh----CCC--C-ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC------CHHHHHHH
Q 040643 604 SAAANLANIKQGKQVHAMIIKT----GYD--S-ETEASNSLITLYAKCGSIDDAKREFLEMP--EK------NEVSWNAM 668 (968)
Q Consensus 604 ~a~~~~~~~~~a~~~~~~~~~~----g~~--~-~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~------d~~~~~~l 668 (968)
..+...|++++|...+..+++. +.. | ....+..+...|...|++++|...+++.. .+ ...+|..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 5566677777777777666542 221 2 23445567777888888888888887643 11 23467778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHH-----HHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc-----chHH
Q 040643 669 ITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFV-----GVLSACSHVGLVNEGLRYFESMSTEYGLVPKP-----EHYA 737 (968)
Q Consensus 669 i~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~-----~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~-----~~y~ 737 (968)
...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|..+++..... .|.. ..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP---EFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC---CCTTCGGGHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCC---CCCcchhhHHHHH
Confidence 8888888999999999888875321222 11222 2233466889999999988877532 2221 1345
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-------PIEPDA-MVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-------~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
.+..++...|++++|.+.+++. +..++. .++..+..++...|+.+.|....++++++.+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 6778888889999998888765 111222 24555556678889999999998888887653
No 90
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.79 E-value=2.6e-08 Score=118.86 Aligned_cols=188 Identities=11% Similarity=0.037 Sum_probs=90.3
Q ss_pred hhhhhHHHHHHHHHHHH--------HhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhc
Q 040643 607 ANLANIKQGKQVHAMII--------KTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQH 675 (968)
Q Consensus 607 ~~~~~~~~a~~~~~~~~--------~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~ 675 (968)
...|+.++|.+.+..++ +. .+.+...+..+...|.+.|++++|.+.|+++. ..+...|..+...|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 45566666666665555 21 12234445555555555555555555555544 22445555555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR 753 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~ 753 (968)
|++++|++.|++.++ +.|+ ...+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 555555555555555 4453 2345555555555555555 5555544322 333 344445555555555555555
Q ss_pred HHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----hhHHHHHHHHHHccCCCCcch
Q 040643 754 EFTEQM-PIEPD-AMVWRTLLSACRVHKN-----MEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 754 ~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-----~~~a~~~~~~~~~l~p~~~~~ 801 (968)
+.+++. .+.|+ ...|..+..++...++ .+...++.+.+.++.|+++..
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~ 609 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRV 609 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHH
Confidence 555554 34444 3333333333322222 233344444444444444443
No 91
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=1.4e-07 Score=95.54 Aligned_cols=179 Identities=9% Similarity=0.017 Sum_probs=115.8
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHH
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMP--EKN----EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFV 701 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~ 701 (968)
..+..+...+.+.|++++|...|+++. .|+ ...|..+..+|...|++++|+..|++.++ ..|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~--~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIR--LNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--HCcCCCcHHHHHH
Confidence 344455666777888888888888765 232 24677777888888888888888888887 556532 333
Q ss_pred HHHHHHcc------------------cCcHHHHHHHHHHhhhhcCCCCCcc-hHHHHHHHHhhcCChHHHHHHHHhCCCC
Q 040643 702 GVLSACSH------------------VGLVNEGLRYFESMSTEYGLVPKPE-HYACVVDLLGRAGCLSRAREFTEQMPIE 762 (968)
Q Consensus 702 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~i~p~~~-~y~~lv~~l~r~G~~~eA~~~~~~m~~~ 762 (968)
.+..++.. .|+.++|...|+.+.+. .|+.. .+. ++.+.+.+.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~----a~~~l~~~~~~~~-------- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTD----ATKRLVFLKDRLA-------- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHH----HHHHHHHHHHHHH--------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHH----HHHHHHHHHHHHH--------
Confidence 33333332 34556666666555433 23311 111 1111111110000
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc---chHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 040643 763 PDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS---ATYVLLSNIYAAAGKWDCRDQIRQIMKDRGV 830 (968)
Q Consensus 763 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 830 (968)
.....+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|.+..+.+...+.
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 0112344457789999999999999999999986 5799999999999999999999888887654
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.75 E-value=1.1e-07 Score=98.69 Aligned_cols=200 Identities=12% Similarity=0.031 Sum_probs=141.7
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC---hhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC----CHHHHH
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE---TEASNSLITLYAKCGSIDDAKREFLEMP--EK----NEVSWN 666 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~----d~~~~~ 666 (968)
...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++.. .| ....|.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3455566667888999999999999998854 223 5677888899999999999999999876 23 245677
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHH
Q 040643 667 AMITGFSQ--------HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYA 737 (968)
Q Consensus 667 ~li~~~~~--------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~ 737 (968)
.+..++.. .|++++|+..|++.++ ..|+.. ....+ ..+....... ...+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~a~--------------~~~~~~~~~~-----~~~~~ 152 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFID--RYPNHELVDDAT--------------QKIRELRAKL-----ARKQY 152 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHH--HCTTCTTHHHHH--------------HHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHH--HCcCchhHHHHH--------------HHHHHHHHHH-----HHHHH
Confidence 88888888 9999999999999998 567643 22221 1111111100 12245
Q ss_pred HHHHHHhhcCChHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhc----------CChhHHHHHHHHHHccCCCCcc--
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM----PIEPD-AMVWRTLLSACRVH----------KNMEIGEYAANHLLELEPEDSA-- 800 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m----~~~p~-~~~~~~ll~~~~~~----------g~~~~a~~~~~~~~~l~p~~~~-- 800 (968)
.+..+|.+.|++++|...+++. |-.|. ...|..+..++... |+++.|....+++++..|+++.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 6777888888888888888776 33332 44565666666544 8889999999999999999863
Q ss_pred -hHHHHHHHHhhcCCcch
Q 040643 801 -TYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 801 -~~~~l~~~y~~~g~~~~ 817 (968)
++..+..++...|+.++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 45566666666555544
No 93
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.73 E-value=1.1e-07 Score=100.45 Aligned_cols=174 Identities=11% Similarity=-0.002 Sum_probs=138.5
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 647 IDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 647 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
.+...+.+......+...+..+...+...|+.++|+..|++.++ ..|+. ..+..+..++...|+.++|...|+....
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 33444555555555666777888889999999999999999998 78864 5788888899999999999999998754
Q ss_pred hcCCCCCcchHHHHH-HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--cc
Q 040643 726 EYGLVPKPEHYACVV-DLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED--SA 800 (968)
Q Consensus 726 ~~~i~p~~~~y~~lv-~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~ 800 (968)
. .|+........ -.+.+.|+.++|.+.+++. ...|+ ...|..|...+...|+.+.|...++++++++|++ +.
T Consensus 180 ~---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 Q---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp G---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred h---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 3 56543333222 3366778888888888776 45565 7888999999999999999999999999999998 88
Q ss_pred hHHHHHHHHhhcCCcchHHHH-HHHH
Q 040643 801 TYVLLSNIYAAAGKWDCRDQI-RQIM 825 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~-~~~m 825 (968)
.+..|+.+|...|+.++|... |+.+
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 999999999999999998774 5444
No 94
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.71 E-value=1.5e-07 Score=98.71 Aligned_cols=197 Identities=12% Similarity=0.069 Sum_probs=119.3
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHh------CC-CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCC----------C-
Q 040643 599 FGSVVSAAANLANIKQGKQVHAMIIKT------GY-DSETEASNSLITLYAKCGSIDDAKREFLEMPE----------K- 660 (968)
Q Consensus 599 ~~~ll~a~~~~~~~~~a~~~~~~~~~~------g~-~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~----------~- 660 (968)
+..+...+...|++++|...+..+++. +- +....++..+...|...|++++|.+.|++..+ |
T Consensus 46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 125 (283)
T 3edt_B 46 LNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPD 125 (283)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 334444444455555555555444432 11 11244566677777777777777777766531 1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhc------
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKH------DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEY------ 727 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------ 727 (968)
...+|..+...|...|++++|++.|+++.+. +-.|+ ..++..+...+...|++++|..+|+...+..
T Consensus 126 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 205 (283)
T 3edt_B 126 VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFG 205 (283)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 2457788888888889999999988888773 11444 3467788888889999999999998775531
Q ss_pred CCCCC-cchHHHHHHHHhh------cCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccC
Q 040643 728 GLVPK-PEHYACVVDLLGR------AGCLSRAREFTEQMP-IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELE 795 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r------~G~~~eA~~~~~~m~-~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~ 795 (968)
...|. ...+..+...... ...+.++...++... ..|+ ..+|..|...+...|+.+.|....++++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 206 SVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp SCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred CcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 12333 2333333333333 333555555555553 3344 6677788888999999999999999988763
No 95
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.69 E-value=5.9e-08 Score=91.04 Aligned_cols=116 Identities=11% Similarity=0.038 Sum_probs=98.8
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHK 779 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g 779 (968)
|...+...|++++|+..++... ...|+ ...+-.+..+|.+.|++++|.+.+++. .+.|+ +.+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 4456677899999999998764 34555 555667899999999999999999987 66776 888999999999999
Q ss_pred ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHH
Q 040643 780 NMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQI 821 (968)
Q Consensus 780 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 821 (968)
+.+.|+..++++++++|+++.+|..|+.+|...|++++|.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~ 121 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKY 121 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999999999999999999999999988764
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.69 E-value=2.1e-07 Score=110.97 Aligned_cols=181 Identities=11% Similarity=-0.032 Sum_probs=93.9
Q ss_pred HhcCChhhHHHHHHHhhh------cCCcCCc-chHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhc
Q 040643 572 AQSGYCEGALQVFSQMTQ------VGVQANL-YTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKC 644 (968)
Q Consensus 572 ~~~g~~~~A~~l~~~m~~------~g~~p~~-~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~ 644 (968)
...|++++|++.|++... ....|+. ..+..+..++...|++++|...+..+++.. +.+...+..+...|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 455566666666665541 0122332 334444445555666666666665555532 23445555555556666
Q ss_pred CCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHH
Q 040643 645 GSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 645 g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~ 720 (968)
|++++|.+.|++.. .| +...|..+...|.+.|++++ ++.|++.++ +.|+ ...+..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 66666666666544 22 44555666666666666666 666666655 4554 334555555666666666666666
Q ss_pred HHhhhhcCCCCC-cchHHHHHHHHhhcCC--------hHHHHHHHHhC
Q 040643 721 ESMSTEYGLVPK-PEHYACVVDLLGRAGC--------LSRAREFTEQM 759 (968)
Q Consensus 721 ~~m~~~~~i~p~-~~~y~~lv~~l~r~G~--------~~eA~~~~~~m 759 (968)
++.. .+.|+ ...|..++.+|.+.|+ +++|.+.++++
T Consensus 558 ~~al---~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~ 602 (681)
T 2pzi_A 558 DEVP---PTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL 602 (681)
T ss_dssp HTSC---TTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred Hhhc---ccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence 5442 33454 3444445555544332 44555555444
No 97
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.67 E-value=2.9e-06 Score=87.93 Aligned_cols=174 Identities=9% Similarity=0.013 Sum_probs=116.9
Q ss_pred HHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 650 AKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 650 A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
|...|++.. .++..++..+..++...|+.++|++++.+.+..|-.++. ..+..++..+.+.|+.++|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555544 245555567777777788888888888877664432343 3566666777788888888888887754
Q ss_pred hcCCCC-----CcchHHHHH----HHHhhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-
Q 040643 726 EYGLVP-----KPEHYACVV----DLLGRAGCLSRAREFTEQM-PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLEL- 794 (968)
Q Consensus 726 ~~~i~p-----~~~~y~~lv----~~l~r~G~~~eA~~~~~~m-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l- 794 (968)
. .| +-....-+. .+....++.++|..+++++ .-.|+...-..|++++...|+++.|+...+.+.++
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 3 55 222233333 2222334888888888887 33455333344555777889999999999988887
Q ss_pred ---------CCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 795 ---------EPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 795 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
+|+|+.++..+..++...|+ +|.+++..+++.
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 48888888777778888887 888888877763
No 98
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.63 E-value=4.4e-07 Score=82.59 Aligned_cols=126 Identities=21% Similarity=0.314 Sum_probs=71.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
.|..+...|...|++++|+++|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+. .|+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~---------- 67 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALE--LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DPR---------- 67 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHH--cCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CCC----------
Confidence 466677777777777777777777766 3343 445555666666666666666666655432 121
Q ss_pred HhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHH
Q 040643 743 LGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
+..+|..+...+...|+.+.|....+++++..|+++..+..++.+|...|++++|.+..
T Consensus 68 ---------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 68 ---------------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp ---------------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred ---------------------chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 23333444444444455555555555555555555555555555555555555555544
Q ss_pred HHH
Q 040643 823 QIM 825 (968)
Q Consensus 823 ~~m 825 (968)
+.+
T Consensus 127 ~~~ 129 (136)
T 2fo7_A 127 QKA 129 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.63 E-value=1.8e-07 Score=90.58 Aligned_cols=73 Identities=14% Similarity=0.007 Sum_probs=58.9
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC--cchHHHHHHHHhhcCCcchHHHHHH
Q 040643 751 RAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED--SATYVLLSNIYAAAGKWDCRDQIRQ 823 (968)
Q Consensus 751 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~ 823 (968)
+|.+.+++. ...|+ ...|..+...+...|+.+.|...++++++++|+. +..+..|+.+|...|++++|....+
T Consensus 92 ~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 92 PELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 345555544 34565 7788888888999999999999999999999875 5689999999999999999987544
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.60 E-value=3e-07 Score=107.64 Aligned_cols=158 Identities=11% Similarity=0.062 Sum_probs=123.6
Q ss_pred cCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHH
Q 040643 644 CGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
.|++++|.+.|++.. ..+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++...|++++|.++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888999988876 23577899999999999999999999999998 6776 55788888899999999999999
Q ss_pred HHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc---CChhHHHHHHHHHHc
Q 040643 720 FESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH---KNMEIGEYAANHLLE 793 (968)
Q Consensus 720 ~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~ 793 (968)
|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. ...|+ ...|..+...+... |+.+.|....+++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9988654 455 678888999999999999999999887 45554 77888888888888 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 040643 794 LEPEDSATYVLLS 806 (968)
Q Consensus 794 l~p~~~~~~~~l~ 806 (968)
.+|++...|..|+
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999999988877
No 101
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.58 E-value=4.2e-07 Score=82.75 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=79.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
.|..++..+.+.|++++|.++++++ ...| +..+|..+...+...|+.+.|....+++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 4566777788888888888888776 2233 4777888888888899999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHhCC
Q 040643 813 GKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 813 g~~~~a~~~~~~m~~~g 829 (968)
|++++|.+..+.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999877776543
No 102
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=1.9e-07 Score=87.29 Aligned_cols=101 Identities=6% Similarity=-0.073 Sum_probs=86.9
Q ss_pred cCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 727 YGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 727 ~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
..+.|+ .+.+..+...+.+.|++++|.+.+++. ...|+ +..|..|..++...|+++.|...++++++++|+++.+|.
T Consensus 29 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~ 108 (151)
T 3gyz_A 29 NAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108 (151)
T ss_dssp CCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence 355665 566777888888888999988888887 55665 889999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcchHHHHHHHHHh
Q 040643 804 LLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 804 ~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.++.+|...|++++|.+..+...+
T Consensus 109 ~lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 109 HTGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999997665544
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.54 E-value=3.7e-07 Score=91.02 Aligned_cols=153 Identities=9% Similarity=0.035 Sum_probs=110.2
Q ss_pred HHHhcCCHHHHHHHHhcCC--CC-CHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHH
Q 040643 640 LYAKCGSIDDAKREFLEMP--EK-NEVSWNA----------------MITGFSQHGYALEAINLFEKMKKHDVMPN-HVT 699 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~----------------li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t 699 (968)
.+.+.|++++|...|++.. .| +...|.. +...|...|++++|+..|++.++ +.|+ ...
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~ 90 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAPNNVDC 90 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHH
Confidence 3445566666666666554 22 2334444 88889999999999999999998 6786 457
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC--hHHHHHHHHhCCCCCCH--HHHHHHHHH
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC--LSRAREFTEQMPIEPDA--MVWRTLLSA 774 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~--~~eA~~~~~~m~~~p~~--~~~~~ll~~ 774 (968)
+..+..++...|++++|...|++..+ +.|+ ...|..+..+|...|+ .+++...++... .|+. ..|..+..+
T Consensus 91 ~~~lg~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~ 166 (208)
T 3urz_A 91 LEACAEMQVCRGQEKDALRMYEKILQ---LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLS 166 (208)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence 88888899999999999999998865 3666 6778888888876664 345566666653 4443 344444445
Q ss_pred HHhcCChhHHHHHHHHHHccCCCC
Q 040643 775 CRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 775 ~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
....|+.+.|+..+++++++.|++
T Consensus 167 ~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 167 KLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCH
Confidence 667889999999999999999964
No 104
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.51 E-value=3.7e-07 Score=82.57 Aligned_cols=107 Identities=10% Similarity=0.064 Sum_probs=64.1
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHH
Q 040643 700 FVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 700 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~ 776 (968)
+......+.+.|++++|++.|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 444444444444444444444443321 232 344444455555555555555555443 33444 667777777788
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
..|+++.|...++++++++|++..++..|++++
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 888888888888888888888888887777653
No 105
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.50 E-value=3.5e-07 Score=82.65 Aligned_cols=99 Identities=9% Similarity=0.110 Sum_probs=87.9
Q ss_pred CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 729 LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 729 i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
|.|+ .+.+.-.+..|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+.+.|...++++++++|+++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 5566 566778899999999999999999987 55665 88898898999999999999999999999999999999999
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 040643 806 SNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 806 ~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.+|...|++++|.+..+...+
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999997665543
No 106
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.50 E-value=4e-07 Score=106.56 Aligned_cols=147 Identities=16% Similarity=0.042 Sum_probs=112.0
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRA 752 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA 752 (968)
.|+.++|++.|++..+ ..|+ ...+..+..++...|++++|.++|++..+ +.|+ ...|..+..+|.+.|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA---LHPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---TSTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4788999999999988 6786 56788889999999999999999998754 4666 77888999999999999999
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc---CCcchHHHHHHHHH
Q 040643 753 REFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA---GKWDCRDQIRQIMK 826 (968)
Q Consensus 753 ~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~~~~~m~ 826 (968)
.+.+++. ...|+ ...|..+...+...|+.+.|...++++++++|+++..+..++.+|... |++++|.+..+...
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999987 45565 788989999999999999999999999999999999999999999999 88888877655443
No 107
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.47 E-value=7.9e-07 Score=92.21 Aligned_cols=133 Identities=11% Similarity=0.092 Sum_probs=62.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----ChHHHHHHHHH--HcccC--cHHHHHHHHHHhhhhcCCCCCcc
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMP-----NHVTFVGVLSA--CSHVG--LVNEGLRYFESMSTEYGLVPKPE 734 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~i~p~~~ 734 (968)
.+-.++..|.+.|+.+.|.+.+++|.+ ..| +..+...|..+ ....| .+.+|..+|+++... .|+..
T Consensus 138 a~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~ 212 (310)
T 3mv2_B 138 LLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWK 212 (310)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcc
Confidence 344444445555555555555555544 344 23333333333 11122 455555555555333 22211
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CC----------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PI----------EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~----------~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
....+..++.+.|++++|++.++.+ .. .|+ +.+...++......|+ .|.+..+++.++.|+++...
T Consensus 213 ~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 213 TQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred cHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 1112222455555555555555432 11 133 4444344444444554 66777778888888777544
Q ss_pred H
Q 040643 803 V 803 (968)
Q Consensus 803 ~ 803 (968)
.
T Consensus 291 d 291 (310)
T 3mv2_B 291 H 291 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 108
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.46 E-value=5e-06 Score=83.02 Aligned_cols=171 Identities=6% Similarity=-0.090 Sum_probs=120.9
Q ss_pred HHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC----cHHHHHHHHHHhh
Q 040643 650 AKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG----LVNEGLRYFESMS 724 (968)
Q Consensus 650 A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 724 (968)
|.+.|++.. ..++.++..+...|...|+.++|++.|++..+.| +...+..|...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 344444433 3466677777777777778888888888777754 44556666666666 5 7788888887764
Q ss_pred hhcCCCCCcchHHHHHHHHhh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCChhHHHHHHHHHH
Q 040643 725 TEYGLVPKPEHYACVVDLLGR----AGCLSRAREFTEQM-PIEPD---AMVWRTLLSACRV----HKNMEIGEYAANHLL 792 (968)
Q Consensus 725 ~~~~i~p~~~~y~~lv~~l~r----~G~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~----~g~~~~a~~~~~~~~ 792 (968)
+. -+...+..|..+|.. .+++++|.+++++. ...|+ +..+..|...+.. .+|.+.|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 32 235556667777766 77888888888876 44443 6677777666666 778999999999999
Q ss_pred ccCCCCcchHHHHHHHHhhc-C-----CcchHHHHHHHHHhCC
Q 040643 793 ELEPEDSATYVLLSNIYAAA-G-----KWDCRDQIRQIMKDRG 829 (968)
Q Consensus 793 ~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~g 829 (968)
++ |.++..+..|+.+|... | ++++|.+..+...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 77888899999999865 3 7888988877666554
No 109
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.45 E-value=1.4e-06 Score=84.09 Aligned_cols=153 Identities=10% Similarity=-0.008 Sum_probs=105.3
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH-H-Hc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLS-A-CS 708 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~-a-~~ 708 (968)
...+...+.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+ ..|+.. +..++. . +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~--~~p~~~-~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL--EYQDNS-YKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG--GGCCHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh--ccCChH-HHHHHHHHHHH
Confidence 3455566777888888888888877 23667788888888888888888888888766 455332 222221 1 11
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCChhH
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD---AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~~g~~~~ 783 (968)
..+...++...|+...+ +.|+ ...+..+..+|.+.|++++|.+.++++ ...|+ ...|..|...+...|+.+.
T Consensus 86 ~~~~~~~a~~~~~~al~---~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 86 QQAAESPELKRLEQELA---ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHTSCHHHHHHHHHHH---HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred hhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22222346677776654 3565 677778888888888888888888776 44543 5678888888888888888
Q ss_pred HHHHHHHHH
Q 040643 784 GEYAANHLL 792 (968)
Q Consensus 784 a~~~~~~~~ 792 (968)
|...+++.+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887765
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.45 E-value=3.1e-07 Score=85.81 Aligned_cols=100 Identities=6% Similarity=0.010 Sum_probs=81.5
Q ss_pred CCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 728 GLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 728 ~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
.+.|+ ...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 33443 455666777788888888888887776 4455 47888888888999999999999999999999999999999
Q ss_pred HHHHHhhcCCcchHHHHHHHHHh
Q 040643 805 LSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 805 l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
++.+|...|++++|.+..+...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987665543
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.45 E-value=2.4e-06 Score=91.07 Aligned_cols=219 Identities=10% Similarity=0.018 Sum_probs=144.5
Q ss_pred cCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHH
Q 040643 574 SGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKRE 653 (968)
Q Consensus 574 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~ 653 (968)
.|++++|.+++++..+..- .. + +...++++.|...+..+ ...|...|++++|.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 4677888888887664311 10 0 01135555555555443 4567778888888887
Q ss_pred HhcCCC-----CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCC--hHHHHHHHHHHcccCcHHHHHHH
Q 040643 654 FLEMPE-----KN----EVSWNAMITGFSQHGYALEAINLFEKMKKHD---VMPN--HVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 654 f~~~~~-----~d----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~Pd--~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
|.+..+ .+ ..+|+.+...|...|++++|+..|++.++.- -.|+ ..++..+...+.. |++++|+.+
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776541 12 3478888888999999999999998876521 1222 2467778888888 999999999
Q ss_pred HHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCChhHHHHH
Q 040643 720 FESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----AMVWRTLLSACRVHKNMEIGEYA 787 (968)
Q Consensus 720 ~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~~~~~~ll~~~~~~g~~~~a~~~ 787 (968)
|++....+.-..+ ...|..+..+|.+.|++++|.+.+++. |-.++ ...|..+...+...|+.+.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9877553211111 456778889999999999999988876 21222 22455555556677999999999
Q ss_pred HHHHHccCCCCcch-----HHHHHHHHhhcCCcchHHH
Q 040643 788 ANHLLELEPEDSAT-----YVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 788 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~ 820 (968)
+++++ ++|..... ...+...| ..|+.+++.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 99976543 33444444 4566544444
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.42 E-value=4.5e-07 Score=95.25 Aligned_cols=190 Identities=8% Similarity=-0.059 Sum_probs=137.9
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...+..+...|.+.|++++|...|++.. .| +...|..+...|...|++++|++.|++.++ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 44556677788889999999999998765 34 788899999999999999999999999988 6786 457888888
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIG 784 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a 784 (968)
++...|++++|..+|+...+. .|+ ...+...+....+.++..+... .......++..++.. ++... .|+.+.|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~-l~~l~-~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSY-LTRLI-AAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHH-HHHHH-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH-HHHHH-HHHHHHH
Confidence 999999999999999887543 332 2223333433333332222222 222333444444433 34433 6889999
Q ss_pred HHHHHHHHccCCCCcchHHHHHHHHhhc-CCcchHHHHHHHHHh
Q 040643 785 EYAANHLLELEPEDSATYVLLSNIYAAA-GKWDCRDQIRQIMKD 827 (968)
Q Consensus 785 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~ 827 (968)
....+++++++|++......+..++... +++++|.++.....+
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999988888888888887 778999988776544
No 113
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.42 E-value=2.3e-06 Score=85.23 Aligned_cols=158 Identities=9% Similarity=0.007 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHH----------------HHHHHcccCcHHHHHHHHHHhhh
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVG----------------VLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~----------------ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
..+-.....+...|++++|+..|++.++ ..|+. ..+.. +..++...|++++|...|+...+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3444556677899999999999999998 78874 45666 88889999999999999998865
Q ss_pred hcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC--hhHHHHHHHHHHccCCCCcc
Q 040643 726 EYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN--MEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 726 ~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~--~~~a~~~~~~~~~l~p~~~~ 800 (968)
. .|+ ...+..+..+|...|++++|.+.+++. .+.|+ ..+|..+...+...|+ .+.+....++++...|.+ .
T Consensus 83 ~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 158 (208)
T 3urz_A 83 K---APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQ-Y 158 (208)
T ss_dssp H---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHH-H
T ss_pred H---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchh-H
Confidence 4 565 778889999999999999999999987 56675 7788887777655543 344555566665444322 2
Q ss_pred hHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 801 TYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 801 ~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
.+..++..+...|++++|....+...
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al 184 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVI 184 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 45667888889999999998766553
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.41 E-value=3.5e-06 Score=85.10 Aligned_cols=182 Identities=13% Similarity=-0.017 Sum_probs=130.1
Q ss_pred hHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCC--ChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCC-H---HHHHHHH
Q 040643 598 TFGSVVSAAANLANIKQGKQVHAMIIKTGYDS--ETEASNSLITLYAKCGSIDDAKREFLEMP--EKN-E---VSWNAMI 669 (968)
Q Consensus 598 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d-~---~~~~~li 669 (968)
.+......+...|++++|...+..+++..... ....+..+...|.+.|++++|...|++.. .|+ . ..|..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 34455567888999999999999998854221 13567788899999999999999999876 332 2 2455555
Q ss_pred HHHHh------------------cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCC
Q 040643 670 TGFSQ------------------HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLV 730 (968)
Q Consensus 670 ~~~~~------------------~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~ 730 (968)
..+.. .|+.++|+..|+++++ ..|+.. ........ + .+...+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l----~------~~~~~~------- 146 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRL----V------FLKDRL------- 146 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHH----H------HHHHHH-------
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHH----H------HHHHHH-------
Confidence 55554 5789999999999998 678754 22221110 0 001111
Q ss_pred CCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc
Q 040643 731 PKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA 800 (968)
Q Consensus 731 p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~ 800 (968)
....-.++..|.+.|++++|...++++ ...|+ ...|..+..++...|+.+.|....+++....|++..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 012235678899999999999988886 33343 356778888899999999999999999999997654
No 115
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.39 E-value=9.8e-06 Score=84.97 Aligned_cols=147 Identities=16% Similarity=0.187 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH--HHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC---
Q 040643 676 GYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN--EGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC--- 748 (968)
Q Consensus 676 g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~--~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~--- 748 (968)
++.++++++++++++ ..|. ...|..-.....+.|.++ +++++++.+.+. .|. -..|..-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~--~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~---d~~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 124 FDPYREFDILEAMLS--SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT---DLKNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp CCTHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHSSGGGCC
T ss_pred CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccch
Confidence 344555555555554 3342 234444444444444444 455555544332 222 2222222333333333
Q ss_pred ---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC-hhHHHHHHHHHHccC---CCCcchHHHHHHHHhhcCCcchHH
Q 040643 749 ---LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN-MEIGEYAANHLLELE---PEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 749 ---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~l~---p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
+++++++++++ ...|+ ...|..+-......|+ .+.....++++++++ |.++.++..|+.+|.+.|+.++|.
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 55555555554 33343 6666665555555554 333445666666655 566666666666666666666666
Q ss_pred HHHHHHHh
Q 040643 820 QIRQIMKD 827 (968)
Q Consensus 820 ~~~~~m~~ 827 (968)
++.+.+.+
T Consensus 279 ~~~~~l~~ 286 (306)
T 3dra_A 279 TVYDLLKS 286 (306)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.39 E-value=1.2e-06 Score=81.17 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=77.8
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344555666777778888888777775 3455 47788888888999999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|.+..+...+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 99999999987665543
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.37 E-value=4e-06 Score=83.66 Aligned_cols=145 Identities=8% Similarity=-0.041 Sum_probs=109.4
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL 712 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~ 712 (968)
+..+...|.+.|++++|.+.|++..+++...|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|+
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHccc
Confidence 344566788889999999999998888888999999999999999999999999988 5565 4578888888889999
Q ss_pred HHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
+++|...|+...+. .|+..... +...| +...|+ ..+|..+...+...|+.+.|...++++
T Consensus 87 ~~~A~~~~~~al~~---~~~~~~~~-----~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 87 YDLAIKDLKEALIQ---LRGNQLID-----YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHHHHHHT---TTTCSEEE-----CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCccHHH-----HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999887653 23211000 00000 123444 566777777788889999999999999
Q ss_pred HccCCCCc
Q 040643 792 LELEPEDS 799 (968)
Q Consensus 792 ~~l~p~~~ 799 (968)
+++.|++.
T Consensus 148 l~~~p~~~ 155 (213)
T 1hh8_A 148 TSMKSEPR 155 (213)
T ss_dssp HTTCCSGG
T ss_pred HHcCcccc
Confidence 99998764
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.37 E-value=2.5e-06 Score=85.20 Aligned_cols=121 Identities=7% Similarity=-0.006 Sum_probs=82.7
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKN 780 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~ 780 (968)
+...+...|++++|...|+.. +.|+...|..++.++.+.|++++|.+.+++. ...| +..+|..+...+...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 333444455555555555433 2344445555555555566666665555554 2233 36677777777888888
Q ss_pred hhHHHHHHHHHHccCCCCc----------------chHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 781 MEIGEYAANHLLELEPEDS----------------ATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 781 ~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.+.|...+++++++.|++. ..+..++.+|...|++++|.+..+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 8888888888888888877 89999999999999999999987766553
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.36 E-value=8.5e-06 Score=86.05 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-h----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----c
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-H----VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----P 733 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~ 733 (968)
..+...+..+...|++++|++.+++.++..-..+ . ..+..+...+...|++++|..+|+...+...-.++ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3555667778888888888888888777321111 1 12334555667788888888888876542211111 3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------C
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE------D 798 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~ 798 (968)
..|..++.+|...|++++|.+.+++. |..+. ..++..+...+...|+++.|....++++++.++ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778888888888888888888765 22221 257788888899999999999999999887543 1
Q ss_pred cchHHHHHHHHhhcCCcchH-HH
Q 040643 799 SATYVLLSNIYAAAGKWDCR-DQ 820 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a-~~ 820 (968)
+..|..++.+|...|++++| ..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~ 258 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIED 258 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHH
Confidence 56789999999999999999 66
No 120
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.33 E-value=7.1e-05 Score=84.92 Aligned_cols=374 Identities=10% Similarity=-0.006 Sum_probs=211.4
Q ss_pred ccC-ChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCC-hHHHHHHH
Q 040643 261 RSG-NLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGA-FRTGEQLH 338 (968)
Q Consensus 261 ~~g-~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-~~~a~~~~ 338 (968)
+.| +++.|+.+|+.+.. .+-. |+.+.+..+|++-... .|+...|..-+.-..+.++ .+....+|
T Consensus 6 ~~~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~f 71 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVY 71 (493)
T ss_dssp ------CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHH
T ss_pred HcCcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 456 37888888776531 1111 8899999999998874 5787777777777666553 45567788
Q ss_pred HHHHHh-CCCC-ChhhHhHHHHHHH----hcCChhHHHHHHhhCCC-C--Cc-chHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 339 SYAIKV-GISK-DIIVEGSMLDLYV----KCSDVETAYKFFLTTET-E--NV-VLWNVMLVAYGQLNDLSESFQIFKQMQ 408 (968)
Q Consensus 339 ~~~~~~-g~~~-~~~~~~~Li~~y~----~~g~~~~A~~~f~~~~~-~--~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 408 (968)
..++.. |..+ +..+|...+..+. ..++++.++++|++... | +. ..|...... .+......+..++.+..
T Consensus 72 e~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~ 150 (493)
T 2uy1_A 72 EFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVGDTL 150 (493)
T ss_dssp HHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHHHHh
Confidence 877765 5433 5567777776654 23567788888877533 2 11 112222111 11112222333322211
Q ss_pred hcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCC-------hhHHHH
Q 040643 409 TEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGM-------FGEALE 481 (968)
Q Consensus 409 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~ 481 (968)
+.+..++.++ ..+...+.+ .+...|...+.--..++. .+.+..
T Consensus 151 ---------------------~~y~~ar~~y------~~~~~~~~~---~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~ 200 (493)
T 2uy1_A 151 ---------------------PIFQSSFQRY------QQIQPLIRG---WSVKNAARLIDLEMENGMKLGGRPHESRMHF 200 (493)
T ss_dssp ---------------------HHHHHHHHHH------HHHHHHHHT---CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHH
T ss_pred ---------------------HHHHHHHHHH------HHHHHHHhh---ccHHHHHHHHHHHhcCCccCcchhhHHHHHH
Confidence 1122222222 112222221 133356555554322211 234667
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHH-HHHHHhCC--C
Q 040643 482 LFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEA-YLVFNKID--A 558 (968)
Q Consensus 482 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~m~--~ 558 (968)
+|++++... +.+...|...+.-+...|+.+.++.++...++. +.+..++. .|+...+.++. ..+.+... +
T Consensus 201 ~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~~~~l~~~~~~~~ 273 (493)
T 2uy1_A 201 IHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAVYGDLKRKYSMGE 273 (493)
T ss_dssp HHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHHHHHHHHHTC---
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHHHHHHHHHHHhhc
Confidence 788877642 334555666666667778888888888888887 33333332 23332211111 11111110 0
Q ss_pred -------C---CcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh-hHHHHHHHHHHHHHhCC
Q 040643 559 -------K---DNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA-NIKQGKQVHAMIIKTGY 627 (968)
Q Consensus 559 -------~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~ 627 (968)
+ ....|-..+....+.+..+.|..+|.+. ... .++...|......-...+ +.+.|+.+++..++..
T Consensus 274 ~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~- 350 (493)
T 2uy1_A 274 AESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH- 350 (493)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-
T ss_pred cchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-
Confidence 0 1234666677776778889999999888 221 112222221111111223 5888999999888753
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
+.++..+...++...+.|+.+.|+.+|+.+. +....|...+.--..+|+.+.+.++++++..
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3345566778888889999999999999984 4678898888888888998888888888774
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.32 E-value=2.5e-05 Score=82.40 Aligned_cols=158 Identities=10% Similarity=-0.043 Sum_probs=113.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHD-VMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYA 737 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~ 737 (968)
..+..+...|++++|++++++..+.. ..|+.. .+..+...+...|++++|..+|+...+...-.++ ...|.
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34667778888888888888887632 122211 2234666677778888888888887653222222 22578
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-------CCC-CC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-------PIE-PD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATY 802 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-------~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~ 802 (968)
.++.+|.+.|++++|.+.++++ |.. |. ..++..+...+...|+++.|...+++++++.++. +..|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888888888888888887765 111 22 4577888888999999999999999999886554 6789
Q ss_pred HHHHHHHhhcCC-cchHHHHHHH
Q 040643 803 VLLSNIYAAAGK-WDCRDQIRQI 824 (968)
Q Consensus 803 ~~l~~~y~~~g~-~~~a~~~~~~ 824 (968)
..++.+|...|+ +++|.+..+.
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~ 262 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKK 262 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHH
Confidence 999999999996 5999875443
No 122
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.32 E-value=7.4e-06 Score=86.16 Aligned_cols=151 Identities=9% Similarity=0.029 Sum_probs=89.9
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC--CCCHHHHHH-HHHHHHhcCCH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP--EKNEVSWNA-MITGFSQHGYA 678 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~--~~d~~~~~~-li~~~~~~g~~ 678 (968)
+...+...|+.++|...+..+++.. +.+...+..|...|.+.|++++|...|+++. .|+...+.. ....+...|+.
T Consensus 123 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 123 QAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhccc
Confidence 3334444555555555555554432 2345566667777777777777777777776 344433222 22235566666
Q ss_pred HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhhcCChHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGRAGCLSRARE 754 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r~G~~~eA~~ 754 (968)
++|++.|++..+ ..|+ ...+..+..++...|++++|...|..+.+. .|+ ...+..++.+|...|+.++|..
T Consensus 202 ~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~---~p~~~~~~a~~~l~~~~~~~g~~~~a~~ 276 (287)
T 3qou_A 202 TPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX---DLTAADGQTRXTFQEILAALGTGDALAS 276 (287)
T ss_dssp CHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTGGGGHHHHHHHHHHHHHCTTCHHHH
T ss_pred CccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc---ccccccchHHHHHHHHHHHcCCCCcHHH
Confidence 677777777776 5565 345666667777777777777777766544 333 3455666666666666666665
Q ss_pred HHHh
Q 040643 755 FTEQ 758 (968)
Q Consensus 755 ~~~~ 758 (968)
.+++
T Consensus 277 ~~r~ 280 (287)
T 3qou_A 277 XYRR 280 (287)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 123
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.29 E-value=7.2e-05 Score=78.35 Aligned_cols=226 Identities=14% Similarity=0.095 Sum_probs=162.5
Q ss_pred CChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhh--hHHHHHHHHHHHHHhCCCCChhHHhHHhhHH----Hhc---
Q 040643 575 GYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLA--NIKQGKQVHAMIIKTGYDSETEASNSLITLY----AKC--- 644 (968)
Q Consensus 575 g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~--~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y----~k~--- 644 (968)
...++|++++.+++.. .|+..| ++.--......+ .++++......++... +-+..+|+.-...+ .+.
T Consensus 47 e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 47 EYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 3345677777776653 455544 233333444555 6777777777776653 23344454433333 444
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc------
Q 040643 645 GSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYAL--EAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL------ 712 (968)
Q Consensus 645 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~------ 712 (968)
++++++.++++.+. .+|..+|+--...+.+.|.++ ++++.++++++ ..|. ...|..-.....+.|.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~--~d~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID--TDLKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccchhhh
Confidence 78899999999876 568889998888888889888 99999999998 5664 5567766666677676
Q ss_pred HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCChhHHH
Q 040643 713 VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSR-AREFTEQM-PI----EPDAMVWRTLLSACRVHKNMEIGE 785 (968)
Q Consensus 713 ~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~e-A~~~~~~m-~~----~p~~~~~~~ll~~~~~~g~~~~a~ 785 (968)
+++++++++.+... .|+ ...|.-...++.+.|+..+ +.++.++. .. ..+...|..|...+...|+.+.|.
T Consensus 202 ~~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~ 278 (306)
T 3dra_A 202 IDEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR 278 (306)
T ss_dssp HHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence 89999999987654 555 6667777888888888544 56677776 22 235788888999988999999999
Q ss_pred HHHHHHHc-cCCCCcchHHHHHHH
Q 040643 786 YAANHLLE-LEPEDSATYVLLSNI 808 (968)
Q Consensus 786 ~~~~~~~~-l~p~~~~~~~~l~~~ 808 (968)
.+.+.+.+ +||-+..+|...++.
T Consensus 279 ~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 279 TVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHhccChHHHHHHHHHHhh
Confidence 99999996 899998888776553
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.27 E-value=3.7e-06 Score=75.84 Aligned_cols=118 Identities=14% Similarity=0.074 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|++.|++..+ ..|+ ...+..+...+...|++++|..+++...+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------- 74 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIE--LNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--------------- 74 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh---------------
Confidence 34555556666666666666666666655 3342 33444444444445555555444443322
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcc
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWD 816 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 816 (968)
..|+ ..+|..+...+...|+.+.|...+++++++.|+++..+..++.+|...|+++
T Consensus 75 --------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 75 --------------------IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred --------------------cCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 2333 5667777777888888999999999999999999999999999999988764
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.27 E-value=0.00029 Score=79.83 Aligned_cols=333 Identities=10% Similarity=-0.018 Sum_probs=194.4
Q ss_pred CChHHHHHHHhhCC--CCCceeHHHHHHHHHhcCC-hhHHHHHHHHHHhc-CCCC-ChhhHHHHHHHhh----cccchhh
Q 040643 443 GNLNTAQEILRRLP--EDDVVSWTAMIVGFVQHGM-FGEALELFEEMENQ-GIQS-DNIGFSSAISACA----GIQALNQ 513 (968)
Q Consensus 443 ~~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~-g~~p-d~~t~~~ll~a~~----~~~~~~~ 513 (968)
++.+.+..+|++.. .|++..|...+.-..+.+. .+....+|+..+.. |..| +...|...+.-+. ..++.+.
T Consensus 28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~ 107 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK 107 (493)
T ss_dssp TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence 66778888888765 3788899998888777763 45677788876654 4434 4455666665543 2467888
Q ss_pred hhhhhHhhhhhcCCCCchhhhhHHHHHHH-----------------cCCHHHHHHHHHhCC----CCCcccHHHHHHHHH
Q 040643 514 GRQIHAQSYISGFSDDLSIGNALISLYAR-----------------CGRIQEAYLVFNKID----AKDNISWNGLISGFA 572 (968)
Q Consensus 514 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-----------------~g~~~~A~~~f~~m~----~~d~~~~~~li~~~~ 572 (968)
++.++..++......- ..+-..|.. .+.+..|+.+++.+. ..+...|...+.--.
T Consensus 108 vR~iy~rAL~~P~~~~----~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~ 183 (493)
T 2uy1_A 108 IRNGYMRALQTPMGSL----SELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEM 183 (493)
T ss_dssp HHHHHHHHHTSCCTTH----HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhhhH----HHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 9999999887422111 222222222 112223343333222 113335655544422
Q ss_pred hcCC-------hhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcC
Q 040643 573 QSGY-------CEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCG 645 (968)
Q Consensus 573 ~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g 645 (968)
.++. .+.+..+|+++.... .-+...+...+.-+.+.|+.+.|+.+++.+++. +.+...+.. |+...
T Consensus 184 ~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~ 256 (493)
T 2uy1_A 184 ENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVM 256 (493)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHT
T ss_pred cCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhc
Confidence 2211 234566788877642 223445555556667788899999999998887 444444332 33322
Q ss_pred CHHHHH-HHHhcCC------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHH-HcccC
Q 040643 646 SIDDAK-REFLEMP------------EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSA-CSHVG 711 (968)
Q Consensus 646 ~~~~A~-~~f~~~~------------~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a-~~~~g 711 (968)
..++.. .+.+... ......|-..+..+.++|..+.|.++|++. +.. .++...|...... +...+
T Consensus 257 e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~ 334 (493)
T 2uy1_A 257 DEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATG 334 (493)
T ss_dssp TCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHC
T ss_pred chhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCC
Confidence 111111 1111110 112246777777777778888899999888 311 1222233321111 11234
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
+.+.|+.+|+...+.++-.| +.+...++.+.+.|+.+.|..++++.+ .....|...+.--..+|+.+.+..+.++.
T Consensus 335 d~~~ar~ife~al~~~~~~~--~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~ 410 (493)
T 2uy1_A 335 SRATPYNIFSSGLLKHPDST--LLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQK 410 (493)
T ss_dssp CSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 68889999988877654333 345667787888888888888888873 35778888887777788877777666655
Q ss_pred H
Q 040643 792 L 792 (968)
Q Consensus 792 ~ 792 (968)
+
T Consensus 411 ~ 411 (493)
T 2uy1_A 411 M 411 (493)
T ss_dssp H
T ss_pred H
Confidence 4
No 126
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.24 E-value=3.8e-06 Score=81.08 Aligned_cols=116 Identities=12% Similarity=0.089 Sum_probs=75.2
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCh--h
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSA-CRVHKNM--E 782 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~-~~~~g~~--~ 782 (968)
..|++++|...|+...+. .|+ ...|..++.+|...|++++|.+.+++. ...| +..+|..+... +...|+. +
T Consensus 22 ~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 345555555555544332 232 445555556666666666666665554 2233 35666666666 6677887 8
Q ss_pred HHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 783 IGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 783 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|...++++++++|+++..+..++.+|...|++++|....+...+
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 888888888888888888888888899989999888887665544
No 127
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.23 E-value=8.8e-06 Score=72.59 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|++.|+++.+ ..|+ ..++..+...+...|++++|..+|+.+.+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-------------- 72 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALE--LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------------- 72 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------------
Confidence 44566666666666666666666666665 2343 334444444555555555555555444221
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
...+..+|..+...+...|+.+.|....+++++++|+++..+..++.++...|
T Consensus 73 --------------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 73 --------------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp --------------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred --------------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 12235677777777888888899999999999999999999999988887654
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.22 E-value=2.1e-06 Score=91.44 Aligned_cols=197 Identities=11% Similarity=0.021 Sum_probs=149.7
Q ss_pred hhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 040643 608 NLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEK 687 (968)
Q Consensus 608 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 687 (968)
..|++++|.+++..+.+..-. . .+...|++++|...|++ ....|...|++++|++.|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 367888999998888764211 1 12225889999888765 46778899999999999999
Q ss_pred HHHC----CCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCC--C--CcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 688 MKKH----DVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLV--P--KPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 688 m~~~----g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~--p--~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..+. |-.+. ..+|..+...+...|++++|..+|++..+.+.-. | ....|..+..+|.+ |++++|.+.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 8762 21112 2478888899999999999999999875543211 1 14678889999999 999999999987
Q ss_pred C-CCC---CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc------hHHHHHHHHhhcCCcchHHHHHHH
Q 040643 759 M-PIE---PD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA------TYVLLSNIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 759 m-~~~---p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 824 (968)
. .+. .+ ..++..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|....+.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 211 11 567888888899999999999999999999876643 677788899999999999997665
Q ss_pred HH
Q 040643 825 MK 826 (968)
Q Consensus 825 m~ 826 (968)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.22 E-value=4.9e-06 Score=75.44 Aligned_cols=118 Identities=11% Similarity=-0.017 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV 739 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l 739 (968)
+...|..+...+...|++++|++.|++..+ ..|+ ...+..+...+...|++++|.++|+...+. .|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~-------- 81 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL---EP-------- 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH---CT--------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CC--------
Confidence 455677777777777777777777777776 4453 345555555666666666666666554332 11
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCC
Q 040643 740 VDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGK 814 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 814 (968)
.+..+|..+...+...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 82 -----------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 82 -----------------------TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -----------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -----------------------CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 2356677777778888888888899999999999999999999999987764
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.21 E-value=7.5e-06 Score=88.27 Aligned_cols=160 Identities=13% Similarity=0.093 Sum_probs=116.0
Q ss_pred cCCHHHHHHHHhcCC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHH
Q 040643 644 CGSIDDAKREFLEMP--EK-NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYF 720 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~--~~-d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~ 720 (968)
.+++++|.+.|+... .| +...|..+...|.+.|++++|+..|++.++ +.|+...+ . .+++.+.
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~---------~--~~~~~~~- 191 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSF---------S--NEEAQKA- 191 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCC---------C--SHHHHHH-
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccC---------C--hHHHHHH-
Confidence 345556666665544 22 456888899999999999999999999988 55654210 0 0111111
Q ss_pred HHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 721 ESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 721 ~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
..+ ....|..+..+|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|++
T Consensus 192 ~~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 263 (336)
T 1p5q_A 192 QAL--------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN 263 (336)
T ss_dssp HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred HHH--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCC
Confidence 000 0234666777777777777777777766 44554 7788888888999999999999999999999999
Q ss_pred cchHHHHHHHHhhcCCcchHHH-HHHHH
Q 040643 799 SATYVLLSNIYAAAGKWDCRDQ-IRQIM 825 (968)
Q Consensus 799 ~~~~~~l~~~y~~~g~~~~a~~-~~~~m 825 (968)
..++..|+.+|...|++++|.+ ..+.|
T Consensus 264 ~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 264 KAAKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999944 44444
No 131
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.20 E-value=3e-05 Score=77.26 Aligned_cols=171 Identities=8% Similarity=-0.074 Sum_probs=117.9
Q ss_pred HHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHH
Q 040643 616 KQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHG----YALEAINLFEKMKK 690 (968)
Q Consensus 616 ~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g----~~~~A~~l~~~m~~ 690 (968)
.+.+....+.| ++.....|..+|...+++++|.+.|++.. ..++.++..|...|.. | +.++|++.|++..+
T Consensus 6 ~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~ 81 (212)
T 3rjv_A 6 GSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE 81 (212)
T ss_dssp THHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH
Confidence 34444444433 55666677777777888888888887765 3466777777777776 5 78888888888876
Q ss_pred CCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHhhhhcCCCCC---cchHHHHHHHHhh----cCChHHHHHHHHhC
Q 040643 691 HDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESMSTEYGLVPK---PEHYACVVDLLGR----AGCLSRAREFTEQM 759 (968)
Q Consensus 691 ~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~i~p~---~~~y~~lv~~l~r----~G~~~eA~~~~~~m 759 (968)
.| +...+..|...+.. .+++++|.++|+...+ ..|. +..+..|..+|.. .+++++|.+++++.
T Consensus 82 ~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~---~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 82 AG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR---DSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp TT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS---STTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred CC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH---cCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 54 45566667777766 7788888888887643 3443 5667778888877 77888888888876
Q ss_pred -CCCCCHHHHHHHHHHHHh------cCChhHHHHHHHHHHccCC
Q 040643 760 -PIEPDAMVWRTLLSACRV------HKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 760 -~~~p~~~~~~~ll~~~~~------~g~~~~a~~~~~~~~~l~p 796 (968)
...++...+..|...+.. ..|.+.|...++++.+..+
T Consensus 156 ~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 156 SSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 222344455555555432 2388889888888888754
No 132
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.19 E-value=1.9e-06 Score=80.36 Aligned_cols=101 Identities=8% Similarity=-0.084 Sum_probs=54.8
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH 778 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~ 778 (968)
.+...+...|++++|...|+..... .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++...
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3333444444444444444433221 222 333344444444445555555444443 22333 45666666677778
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
|+.+.|...+++++++.|+++......
T Consensus 103 g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 103 GELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp TCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred CCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 888888888888888888877665444
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5.6e-06 Score=74.58 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=76.3
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
+.+..++..+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...++++++++|+++..|..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555667777788888888777765 44454 77888888888899999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|.+..+...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999887665543
No 134
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.18 E-value=8.7e-06 Score=77.20 Aligned_cols=127 Identities=6% Similarity=0.001 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|+..|++.++ ..|+ ..++..+...+...|++++|..+|+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--------------- 75 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--------------- 75 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------------
Confidence 34566666666677777777777777666 3443 33455555555555555555555554432
Q ss_pred HHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH--HHHhhcCCcch
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS--NIYAAAGKWDC 817 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~ 817 (968)
..| +..+|..+...+...|+.+.|...++++++++|++...+..+. ..+...|++++
T Consensus 76 --------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 76 --------------------LDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------hCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 223 3566777777788888888999999999999999888885444 44888899999
Q ss_pred HHHHHHHH
Q 040643 818 RDQIRQIM 825 (968)
Q Consensus 818 a~~~~~~m 825 (968)
|.+..+..
T Consensus 136 A~~~~~~~ 143 (166)
T 1a17_A 136 AIAGDEHK 143 (166)
T ss_dssp HHHHHHHH
T ss_pred HHHcccch
Confidence 98876554
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.16 E-value=3.6e-06 Score=86.10 Aligned_cols=136 Identities=11% Similarity=-0.023 Sum_probs=78.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHh
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLG 744 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~ 744 (968)
.....+...|++++|.++|+.+.. ..|+......+...+.+.|++++++.+|+...+. . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 344555556666666666666554 2354444444444566666666666666533211 0 111 123455566666
Q ss_pred hcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 745 RAGCLSRAREFTEQM---PIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 745 r~G~~~eA~~~~~~m---~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
+.|++++|++.+++. +.+|. ...+..+..+++..|+.+.|...++++++.+|+ +..+..|.+
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 677777776666655 33243 335555666677778888888888888888887 666655544
No 136
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.15 E-value=3.4e-06 Score=75.43 Aligned_cols=94 Identities=18% Similarity=0.068 Sum_probs=81.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..+..+...+.+.|++++|...+++. ...|+ ...|..+..++...|+.+.|+..++++++++|+++..+..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 44566778889999999999999887 55664 88888888889999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|....+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999997765543
No 137
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.15 E-value=1.1e-05 Score=70.38 Aligned_cols=95 Identities=16% Similarity=0.130 Sum_probs=78.9
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC--CcchHHHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPE--DSATYVLLSNI 808 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 808 (968)
...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 556777788888888888888887776 3344 4777888888888999999999999999999999 99999999999
Q ss_pred Hhhc-CCcchHHHHHHHHHh
Q 040643 809 YAAA-GKWDCRDQIRQIMKD 827 (968)
Q Consensus 809 y~~~-g~~~~a~~~~~~m~~ 827 (968)
|... |++++|.+..+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 9999 999999988776644
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.14 E-value=4.1e-06 Score=82.56 Aligned_cols=164 Identities=9% Similarity=-0.019 Sum_probs=104.9
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG 711 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g 711 (968)
+..+......|.+++|.+.++...+ .....|..+...+...|++++|++.|++.++ +.|+...+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~-------- 77 (198)
T 2fbn_A 8 HHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALD--FFIHTEEWDDQ-------- 77 (198)
T ss_dssp --------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTTTCTTCCCH--------
T ss_pred cchhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HHhcccccchh--------
Confidence 3444555667778888777775442 2455788888899999999999999999988 44542211000
Q ss_pred cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHH
Q 040643 712 LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAAN 789 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~ 789 (968)
..++-. ..+ ....|..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...++
T Consensus 78 ~~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 78 ILLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000000 000 0234555666777777777777776665 33443 6777788888889999999999999
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
++++++|++...+..++.++...|+.+++.
T Consensus 147 ~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 147 KAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988887776
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.14 E-value=5.4e-06 Score=77.22 Aligned_cols=118 Identities=12% Similarity=0.000 Sum_probs=70.1
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccC
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVG 711 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g 711 (968)
+.+.+.+.....+.+++|.++ .+.+...|..+...+.+.|++++|+..|++.++ +.|+ ...|..+..++...|
T Consensus 11 ~~~~l~~~~~~~~~l~~al~l----~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g 84 (151)
T 3gyz_A 11 ISTAVIDAINSGATLKDINAI----PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKE 84 (151)
T ss_dssp HHHHHHHHHHTSCCTGGGCCS----CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCCHHHHhCC----CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHc
Confidence 334455555444444433221 122455677777777788888888888888777 5665 446666777777777
Q ss_pred cHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 712 LVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 712 ~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
++++|...|+...+. .|+ ...|..+..+|.+.|++++|.+.+++.
T Consensus 85 ~~~~Ai~~~~~al~l---~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 85 QFQQAADLYAVAFAL---GKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp CHHHHHHHHHHHHHH---SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhh---CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777766432 343 444555555555555555555554443
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=6.3e-06 Score=93.47 Aligned_cols=114 Identities=6% Similarity=0.037 Sum_probs=77.9
Q ss_pred HcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhH
Q 040643 707 CSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEI 783 (968)
Q Consensus 707 ~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~ 783 (968)
+...|++++|.++|++..+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.|+ ..+|..+..++...|+.+.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 33445555555555544322 333 444555556666666666666665554 34454 6778888888899999999
Q ss_pred HHHHHHHHHccCCCCcchHHHHHHH--HhhcCCcchHHHHHH
Q 040643 784 GEYAANHLLELEPEDSATYVLLSNI--YAAAGKWDCRDQIRQ 823 (968)
Q Consensus 784 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~ 823 (968)
|+..++++++++|+++..+..++.+ |...|++++|.+..+
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999998 889999999998755
No 141
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.12 E-value=2.9e-05 Score=76.49 Aligned_cols=116 Identities=16% Similarity=0.074 Sum_probs=68.2
Q ss_pred hcCCHHHHHH---HHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-hHHHHHHHHHHcccCcHH
Q 040643 643 KCGSIDDAKR---EFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK----HDVMPN-HVTFVGVLSACSHVGLVN 714 (968)
Q Consensus 643 k~g~~~~A~~---~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~Pd-~~t~~~ll~a~~~~g~~~ 714 (968)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++.++ .|..|. ..++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4677778877 55443334566778888888888888888888887765 222222 235666666777777777
Q ss_pred HHHHHHHHhhhhcCCCC-C----cchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 715 EGLRYFESMSTEYGLVP-K----PEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 715 ~a~~~~~~m~~~~~i~p-~----~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+|..+|++..+...-.| + ...+..+..++.+.|++++|.+.+++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 77777776544321111 1 22344455555555555555555443
No 142
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.10 E-value=0.00016 Score=76.12 Aligned_cols=158 Identities=7% Similarity=-0.091 Sum_probs=116.1
Q ss_pred HhhHHHhcCCHHHHHHHHhcCCC-----CCH---H-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh----HHHHH
Q 040643 637 LITLYAKCGSIDDAKREFLEMPE-----KNE---V-SWNAMITGFSQHGYALEAINLFEKMKKHDVM-PNH----VTFVG 702 (968)
Q Consensus 637 li~~y~k~g~~~~A~~~f~~~~~-----~d~---~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~----~t~~~ 702 (968)
.+..+...|++++|.+.+++..+ ++. . .+..+...+...|++++|++.|++.++.... +|. .++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35677888999999999887542 121 2 2334666677778999999999999884322 232 25888
Q ss_pred HHHHHcccCcHHHHHHHHHHhhhhcC----CCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHH
Q 040643 703 VLSACSHVGLVNEGLRYFESMSTEYG----LVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD-AMVWR 769 (968)
Q Consensus 703 ll~a~~~~g~~~~a~~~~~~m~~~~~----i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~-~~~~~ 769 (968)
+..++...|++++|..+|+.+.+.+. ..|. ...|..++.+|.+.|++++|.+.+++. ...+. +.+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88899999999999999998864322 1222 346788899999999999999988875 12233 67787
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHcc
Q 040643 770 TLLSACRVHKN-MEIGEYAANHLLEL 794 (968)
Q Consensus 770 ~ll~~~~~~g~-~~~a~~~~~~~~~l 794 (968)
.+...+...|+ .+.|....++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 88888888885 59999999988765
No 143
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.10 E-value=7.8e-06 Score=78.78 Aligned_cols=126 Identities=10% Similarity=0.076 Sum_probs=74.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCC-CcchHHHHHHH-HhhcCCh--
Q 040643 675 HGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVP-KPEHYACVVDL-LGRAGCL-- 749 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p-~~~~y~~lv~~-l~r~G~~-- 749 (968)
.|++++|+..|++..+ ..|+ ...+..+...+...|++++|..+|+...+. .| +...+..++.+ +.+.|++
T Consensus 23 ~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ----CCCCHHHHHHHH--HCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred ccCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcch
Confidence 3445555555555544 3343 334455555555555555555555554332 22 23445555555 5566666
Q ss_pred HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 750 SRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 750 ~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
++|.+.+++. ...|+ ..+|..+...+...|+.+.|...++++++++|+++.....+
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 155 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLV 155 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 6666666655 33444 66777777788888999999999999999999887665544
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.08 E-value=6.6e-06 Score=76.03 Aligned_cols=74 Identities=8% Similarity=-0.083 Sum_probs=45.1
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...+++++++.|+++........+
T Consensus 54 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 3344444444455555555444443 22333 45566666667777888888888888888888887776655443
No 145
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.06 E-value=5.9e-06 Score=93.71 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=84.9
Q ss_pred HhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcc
Q 040643 634 SNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSH 709 (968)
Q Consensus 634 ~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~ 709 (968)
+..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|++.|++.++ +.|+ ..++..+..++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 3445667778888888888888765 33577888888888888888888888888888 5675 4567778888888
Q ss_pred cCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHH--HhhcCChHHHHHHHH
Q 040643 710 VGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDL--LGRAGCLSRAREFTE 757 (968)
Q Consensus 710 ~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~--l~r~G~~~eA~~~~~ 757 (968)
.|++++|.++|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888888877554 343 3445555544 667777777777776
No 146
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.02 E-value=5.4e-06 Score=84.81 Aligned_cols=181 Identities=9% Similarity=-0.012 Sum_probs=136.5
Q ss_pred hcCCHHHHHHHHhcCC--CC-CHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCChH--------------
Q 040643 643 KCGSIDDAKREFLEMP--EK-NEVSWNAM-------ITGFSQHGYALEAINLFEKMKKHDVMPNHV-------------- 698 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~--~~-d~~~~~~l-------i~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~-------------- 698 (968)
..++...|.+.|.++. .| ....|+.+ ...+...++..+++..+.+-.+ +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888999998876 33 56788877 4556655566666666666554 555432
Q ss_pred --------HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC----HH
Q 040643 699 --------TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD----AM 766 (968)
Q Consensus 699 --------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~----~~ 766 (968)
....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|++.++...-.|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123355678889999999999998754 245432556677799999999999999997743443 34
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHccC--CC-CcchHHHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 767 VWRTLLSACRVHKNMEIGEYAANHLLELE--PE-DSATYVLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 767 ~~~~ll~~~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
++-.|-.++...|+.+.|+..++++.+.. |. .+...+.++.++.+.|+.++|..+.+.+...
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 67777788999999999999999998654 55 5568899999999999999999988877663
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.01 E-value=0.00039 Score=73.25 Aligned_cols=228 Identities=13% Similarity=0.089 Sum_probs=149.7
Q ss_pred hcCChh-hHHHHHHHhhhcCCcCCcchH-H---HHHHHHhh-------hhhHHHHHHHHHHHHHhCCCCChhHHhHHhhH
Q 040643 573 QSGYCE-GALQVFSQMTQVGVQANLYTF-G---SVVSAAAN-------LANIKQGKQVHAMIIKTGYDSETEASNSLITL 640 (968)
Q Consensus 573 ~~g~~~-~A~~l~~~m~~~g~~p~~~t~-~---~ll~a~~~-------~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~ 640 (968)
+.|.++ +|++++..+... .|+..|. + .++..... ...++++..+...++... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 444443 677777777754 5665543 1 12222111 112567777777777653 4466677776666
Q ss_pred HHhcC--CHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHccc---
Q 040643 641 YAKCG--SIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY-ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHV--- 710 (968)
Q Consensus 641 y~k~g--~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~--- 710 (968)
+.+.| .++++..+++.+. .+|..+|+--.......|. .+++++.++++++ ..|+ ...|........+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~--~~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT--RNFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhhhc
Confidence 77777 4789999888876 5578889888888888887 6899999999998 5664 44555554444433
Q ss_pred -----------CcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc-----------CChHHHHHHHHhC-CCCCCHH
Q 040643 711 -----------GLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA-----------GCLSRAREFTEQM-PIEPDAM 766 (968)
Q Consensus 711 -----------g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~-----------G~~~eA~~~~~~m-~~~p~~~ 766 (968)
+.+++++++++..... .|+ ...|.-+-.++.+. +.++++.+.++++ .++||.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~- 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN- 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred cccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-
Confidence 5678888888877543 565 44454444555554 5688888888887 677775
Q ss_pred HHHHHHHHH-----HhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 767 VWRTLLSAC-----RVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 767 ~~~~ll~~~-----~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
.|..+-.+. ...|..+.......++.++||...+.|.-|.+-+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 464332222 1356667778888999999998888887776543
No 148
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.01 E-value=4.5e-05 Score=75.07 Aligned_cols=154 Identities=15% Similarity=0.051 Sum_probs=95.0
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-C
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMPE---------KNEVSWNAMITGFSQHGYALEAINLFEKMKKH----DVMP-N 696 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~---------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~P-d 696 (968)
..++..+...|...|++++|...|++..+ ....+|+.+...|...|++++|++.|++..+. |-.| .
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 44555566666667777776666665431 13456777888888888888888888887662 1122 1
Q ss_pred -hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 040643 697 -HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTL 771 (968)
Q Consensus 697 -~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~l 771 (968)
...+..+...+...|++++|..+|++..+...-.++ ...+..+..++.+.|++++|.+.+++ .
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~------------a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR------------A 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH------------H
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH------------H
Confidence 234667777888889999999988876543211111 23356677777778888877776654 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCC
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEP 796 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p 796 (968)
+......|+......+...+-...|
T Consensus 174 l~~~~~~~~~~~~~~~~~~~~~~~~ 198 (203)
T 3gw4_A 174 RDIFAELEDSEAVNELMTRLNGLEH 198 (203)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHhcccchhh
Confidence 3334445554444444444444443
No 149
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.99 E-value=2.1e-05 Score=74.51 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEcCE
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVKNS 844 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~~~ 844 (968)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|++++|....+...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l---------------- 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN---------------- 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------
Confidence 5678888888899999999999999999999999999999999999999999999876654432
Q ss_pred EEEEecCCCCCcchH-HHHHHHHHHHHHHHHc
Q 040643 845 IHAFFVGDRLHPLAD-KIYDYLGNLNRRVAEI 875 (968)
Q Consensus 845 ~~~f~~~d~~h~~~~-~i~~~l~~l~~~~~~~ 875 (968)
.|... .|...|..+..++++.
T Consensus 127 ----------~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 127 ----------HPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp ----------CGGGHHHHHHHHHHHHHHHHHH
T ss_pred ----------CCCCHHHHHHHHHHHHHHHHHH
Confidence 25555 6777788887777653
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.99 E-value=1.9e-05 Score=72.12 Aligned_cols=95 Identities=12% Similarity=-0.028 Sum_probs=75.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...|..++..+...|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 455666667777777777777776665 33444 6778888888888999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|....+...+
T Consensus 89 ~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 89 EMESYDEAIANLQRAYS 105 (137)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999887665543
No 151
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=0.00011 Score=67.69 Aligned_cols=115 Identities=10% Similarity=-0.007 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH 735 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~ 735 (968)
.+...|..+...+...|++++|++.|++..+ ..|+. ..+..+..++.+.|++++|..+|+...+.
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------- 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--------- 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh---------
Confidence 3667788888888888888888888888887 56763 44555555666666666666666554322
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
.| +..+|..+...+...|+.+.|...++++++++|++...+..+..+...
T Consensus 95 --------------------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 95 --------------------------DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp --------------------------TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred --------------------------CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 23 355666666667777888888888888888888888777777766543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.98 E-value=3.9e-05 Score=67.43 Aligned_cols=111 Identities=14% Similarity=0.061 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
+..|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|..+++...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--------------- 66 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD--------------- 66 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH---------------
Confidence 34555566666666666666666666665 3443 33444444444455555555555444322
Q ss_pred HHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIY 809 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 809 (968)
..| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+.
T Consensus 67 --------------------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 67 --------------------LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp --------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred --------------------hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 223 2555666666677777777777777788888887777776666553
No 153
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=97.97 E-value=3.9e-05 Score=67.43 Aligned_cols=94 Identities=7% Similarity=0.072 Sum_probs=80.0
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..+..++..+.+.|++++|.+.+++. ...| +...|..+...+...|+.+.|...++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 44566777788888888888888776 3344 577888888888999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|.+..+...+
T Consensus 85 ~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLK 100 (118)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9999999998776654
No 154
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=97.97 E-value=3.3e-05 Score=73.04 Aligned_cols=121 Identities=11% Similarity=0.077 Sum_probs=83.7
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHc
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACS 708 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~ 708 (968)
.+..+...|...|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ ..|+ ...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHH
Confidence 34556667777888888888887654 34677788888888888888888888888887 4564 456777777888
Q ss_pred ccCcHHHHHHHHHHhhhhcCCCCC-cchH--HHHHHHHhhcCChHHHHHHHHh
Q 040643 709 HVGLVNEGLRYFESMSTEYGLVPK-PEHY--ACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 709 ~~g~~~~a~~~~~~m~~~~~i~p~-~~~y--~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
+.|++++|..+|+...+. .|+ ...+ -.++..+.+.|++++|.+.+++
T Consensus 93 ~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 888888888888877543 333 2222 2333335566777777666554
No 155
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.97 E-value=7.9e-05 Score=78.49 Aligned_cols=160 Identities=9% Similarity=-0.047 Sum_probs=103.3
Q ss_pred hHHhhHHHhcCCHHHHHHHHhcCC---CCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--hHHH
Q 040643 635 NSLITLYAKCGSIDDAKREFLEMP---EKNE------VSWNAMITGFSQHGYALEAINLFEKMKKHDV---MPN--HVTF 700 (968)
Q Consensus 635 ~~li~~y~k~g~~~~A~~~f~~~~---~~d~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~Pd--~~t~ 700 (968)
...+..|...|++++|.+.+++.. +.+. ..+..+...+...|++++|++.|++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 344556777788888877776432 1111 2233455556677788888888888775321 111 2367
Q ss_pred HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-----cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC------C-HHH
Q 040643 701 VGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-----PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP------D-AMV 767 (968)
Q Consensus 701 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-----~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p------~-~~~ 767 (968)
..+...+...|++++|..+|++..+.....|+ ...|..++.+|.+.|++++|.+.+++. .+.+ . ..+
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 77777888888888888888877633222333 146777788888888888888887765 1111 1 566
Q ss_pred HHHHHHHHHhcCChhHH-HHHHHHHHcc
Q 040643 768 WRTLLSACRVHKNMEIG-EYAANHLLEL 794 (968)
Q Consensus 768 ~~~ll~~~~~~g~~~~a-~~~~~~~~~l 794 (968)
|..+...+...|+.+.| ....++++++
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 77777777888888888 6667776654
No 156
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.96 E-value=1.9e-05 Score=75.00 Aligned_cols=89 Identities=12% Similarity=0.061 Sum_probs=47.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAG 813 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 813 (968)
+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|+..++++++++|+++..|..++.+|...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 334444444444444444444443 2233 24455555555555555555555566666666666666666666666666
Q ss_pred CcchHHHHHHH
Q 040643 814 KWDCRDQIRQI 824 (968)
Q Consensus 814 ~~~~a~~~~~~ 824 (968)
++++|.+..+.
T Consensus 94 ~~~~A~~~~~~ 104 (164)
T 3sz7_A 94 DYKGAKEAYEK 104 (164)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66666554443
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.94 E-value=3.2e-05 Score=71.22 Aligned_cols=112 Identities=11% Similarity=-0.012 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-------------HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCC
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH-------------VTFVGVLSACSHVGLVNEGLRYFESMSTEYGL 729 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 729 (968)
..|......+...|++++|+..|++.++ +.|+. ..|..+..++...|++++|+..|+...+
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~---- 85 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH---- 85 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----
Confidence 3456667778888999999999999888 66651 1455555566666666666665554321
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHh-CCCCCC-HHHH----HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHH
Q 040643 730 VPKPEHYACVVDLLGRAGCLSRAREFTEQ-MPIEPD-AMVW----RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYV 803 (968)
Q Consensus 730 ~p~~~~y~~lv~~l~r~G~~~eA~~~~~~-m~~~p~-~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 803 (968)
+|++ .++.|+ ...| .....++...|+++.|...++++++++|+|.+.+-
T Consensus 86 -------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~ 140 (159)
T 2hr2_A 86 -------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETP 140 (159)
T ss_dssp -------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCT
T ss_pred -------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHH
Confidence 1222 245887 6788 88888999999999999999999999999987654
Q ss_pred HH
Q 040643 804 LL 805 (968)
Q Consensus 804 ~l 805 (968)
-+
T Consensus 141 ~~ 142 (159)
T 2hr2_A 141 GK 142 (159)
T ss_dssp TH
T ss_pred HH
Confidence 43
No 158
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.93 E-value=0.0002 Score=75.81 Aligned_cols=176 Identities=12% Similarity=0.062 Sum_probs=97.7
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH------
Q 040643 647 IDDAKREFLEMP---EKNEVSWNAMITGFSQH-G-YALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN------ 714 (968)
Q Consensus 647 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~-g-~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~------ 714 (968)
++++.+.++.+. .++..+|+--...+... + +.++++++++++++ ..|. ...|..-.....+.|.++
T Consensus 105 l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~--~dpkNy~AW~~R~wvl~~l~~~~~~~~~~ 182 (349)
T 3q7a_A 105 LEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLL--PDPKNYHTWAYLHWLYSHFSTLGRISEAQ 182 (349)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTS--SCTTCHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhccccccchhh
Confidence 555555555543 33455555555554444 4 55566666666655 3443 334444433333333333
Q ss_pred --HHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCC-------hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCh-
Q 040643 715 --EGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGC-------LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNM- 781 (968)
Q Consensus 715 --~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~-------~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~- 781 (968)
+++++++++.+. .|. ...|.-...++.+.|+ +++++++++++ ...|+ ...|.-+-+.+...|+.
T Consensus 183 ~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~ 259 (349)
T 3q7a_A 183 WGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPL 259 (349)
T ss_dssp HHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCc
Confidence 666666655443 333 3334444455555554 56777777665 44554 77777666666555543
Q ss_pred -------------------hHHHHHHHHHHccC------CCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 782 -------------------EIGEYAANHLLELE------PEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 782 -------------------~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.-...+..++... +..+-+...|+.+|...|+.++|.++.+.+.+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 260 VPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp GGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 22222333333322 46677888999999999999999999888864
No 159
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=97.93 E-value=3.5e-05 Score=73.09 Aligned_cols=111 Identities=14% Similarity=0.074 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHH
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACV 739 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~l 739 (968)
+...|..+...|...|++++|++.|++.++ +.|+ ...+..+..++...|++++|+.+|+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--------------- 72 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELAT--------------- 72 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH---------------
Confidence 344566666666666666666666666666 4453 3344444445555555555555554442
Q ss_pred HHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 740 VDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 740 v~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.+.|+ ..+|..+...+...|+++.|...++++++++|++...+...+-.
T Consensus 73 --------------------~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 73 --------------------VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp --------------------HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred --------------------HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 22343 66777788888888999999999999999999999877665543
No 160
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.92 E-value=1.7e-05 Score=71.59 Aligned_cols=89 Identities=9% Similarity=0.025 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc-------hHHHHH
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA-------TYVLLS 806 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l~ 806 (968)
+..++..+.+.|++++|++.+++. .+.|+ ..+|..+..++...|+++.|...++++++++|++.. +|..++
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 445667777777888887777765 45565 778888888899999999999999999999998764 677788
Q ss_pred HHHhhcCCcchHHHHHHH
Q 040643 807 NIYAAAGKWDCRDQIRQI 824 (968)
Q Consensus 807 ~~y~~~g~~~~a~~~~~~ 824 (968)
++|...|++++|.+..+.
T Consensus 91 ~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHH
Confidence 999999999999987554
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=97.91 E-value=3.7e-05 Score=69.04 Aligned_cols=112 Identities=9% Similarity=-0.031 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|...|+...+. .|+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~---~p~-------- 70 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEK---DPN-------- 70 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCC--------
Confidence 34566667777777777777777777776 4554 345556666666666666666666655332 222
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccC------CCCcchHHHHHHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELE------PEDSATYVLLSNIY 809 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 809 (968)
+...|..+..++...|+.+.|....+++++++ |++......+..+.
T Consensus 71 -----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 71 -----------------------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp -----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred -----------------------cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 24555556666666677777777777777777 66666666665543
No 162
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=97.90 E-value=4e-05 Score=69.26 Aligned_cols=95 Identities=13% Similarity=0.067 Sum_probs=81.4
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...+..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 555667778888888888888888876 5555 47788888888899999999999999999999999999999999999
Q ss_pred hcCCcchHHHHHHHHHh
Q 040643 811 AAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 811 ~~g~~~~a~~~~~~m~~ 827 (968)
..|++++|.+..+...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999998776544
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.90 E-value=9.1e-05 Score=68.36 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=81.1
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
...+..++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 455666777788888888888888776 56676 6778888888899999999999999999999999999999999
Q ss_pred HHhhcCCcchHHHHHHHHHh
Q 040643 808 IYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 808 ~y~~~g~~~~a~~~~~~m~~ 827 (968)
+|...|++++|.+..+...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999998766544
No 164
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=97.87 E-value=9.9e-05 Score=66.16 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=93.2
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLS 705 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~ 705 (968)
+...+..+...|...|++++|.+.|++.. ..+...|..+...|...|++++|++.+++..+ ..|+ ...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC--IDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh--cCccCHHHHHHHHH
Confidence 45677888899999999999999999865 34788999999999999999999999999998 5675 557788888
Q ss_pred HHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh
Q 040643 706 ACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL 749 (968)
Q Consensus 706 a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~ 749 (968)
.+...|++++|..+|+...+. .|+ ...+..+..++.+.|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL---DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHhcC
Confidence 899999999999999887554 443 45566666666666654
No 165
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=97.85 E-value=5.7e-05 Score=67.11 Aligned_cols=94 Identities=20% Similarity=0.292 Sum_probs=76.9
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
..+..++..+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.|...+++++++.|+++..+..++.+|..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 44556667777777777777777665 2233 477788888888999999999999999999999999999999999999
Q ss_pred cCCcchHHHHHHHHHh
Q 040643 812 AGKWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~ 827 (968)
.|++++|.+..+.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 9999999998776654
No 166
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.85 E-value=3.8e-05 Score=69.16 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=64.0
Q ss_pred HHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC---cchHHHHHHHH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED---SATYVLLSNIY 809 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y 809 (968)
.++..+.+.|++++|.+.+++. ...|+ ..+|..+...+...|+++.|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3555666677777777766665 22232 1466666666777888888888888888888888 66788888888
Q ss_pred hhcCCcchHHHHHHHHHh
Q 040643 810 AAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 810 ~~~g~~~~a~~~~~~m~~ 827 (968)
...|++++|....+...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888887665543
No 167
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.84 E-value=0.00027 Score=81.46 Aligned_cols=168 Identities=10% Similarity=0.023 Sum_probs=135.8
Q ss_pred CCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHccc
Q 040643 645 GSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGY----------ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHV 710 (968)
Q Consensus 645 g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~ 710 (968)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++++ ..|+ ..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 34467788888766 3466788887777777777 8999999999998 6786 45788888888888
Q ss_pred C--cHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcC-ChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc------
Q 040643 711 G--LVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAG-CLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH------ 778 (968)
Q Consensus 711 g--~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G-~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~------ 778 (968)
| ++++++++++++.+. .|. ...|.--..++.+.| .+++|.++++++ ...|+ ...|..........
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999998764 555 555666777788888 899999999988 56665 89998888776552
Q ss_pred --------CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcch
Q 040643 779 --------KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDC 817 (968)
Q Consensus 779 --------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 817 (968)
+.++.+...++++++++|+|..+|..+.+++...|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 456889999999999999999999999999999999665
No 168
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.83 E-value=7.6e-05 Score=67.17 Aligned_cols=91 Identities=9% Similarity=0.023 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC--------c
Q 040643 663 VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK--------P 733 (968)
Q Consensus 663 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~--------~ 733 (968)
..|..+...|.+.|++++|++.|++.++ +.|+ ...|..+..++...|++++|++.|+...+. .|+ .
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a 83 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEV---GRETRADYKLIA 83 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHh---CcccchhhHHHH
Confidence 4566777778888888888888888877 6675 446777777788888888888877766432 222 1
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHh
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..|..+...+...|++++|.+.+++
T Consensus 84 ~~~~~lg~~~~~~~~~~~A~~~~~k 108 (127)
T 4gcn_A 84 KAMSRAGNAFQKQNDLSLAVQWFHR 108 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 2344444555555555555555544
No 169
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.83 E-value=4.7e-05 Score=79.65 Aligned_cols=90 Identities=6% Similarity=-0.075 Sum_probs=45.9
Q ss_pred hhhHHHHHHHcCCHHHHHHHHHhCC---CCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCC-cchHHHHHHHHhh
Q 040643 533 GNALISLYARCGRIQEAYLVFNKID---AKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQAN-LYTFGSVVSAAAN 608 (968)
Q Consensus 533 ~~~Li~~y~k~g~~~~A~~~f~~m~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~a~~~ 608 (968)
+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+. .|+ ...+..+..++..
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444555555555555555555432 224445555555555666666666665555543 232 2333444444555
Q ss_pred hhhHHHHHHHHHHHHH
Q 040643 609 LANIKQGKQVHAMIIK 624 (968)
Q Consensus 609 ~~~~~~a~~~~~~~~~ 624 (968)
.|++++|...+..+.+
T Consensus 85 ~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 85 MESYDEAIANLQRAYS 100 (281)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555555444
No 170
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.78 E-value=6.6e-05 Score=84.61 Aligned_cols=161 Identities=15% Similarity=0.102 Sum_probs=113.9
Q ss_pred hcCCHHHHHHHHhcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHH
Q 040643 643 KCGSIDDAKREFLEMPE---KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 643 k~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
..+++++|.+.|+...+ .+...|..+...|.+.|++++|+..|++.++ +.|+...+ . -++..+
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~----------~-~~~~~~- 311 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVS--WLEMEYGL----------S-EKESKA- 311 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHTTCCSC----------C-HHHHHH-
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HhcccccC----------C-hHHHHH-
Confidence 44556667666665542 2456888899999999999999999999988 55543210 0 011110
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 720 FESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 720 ~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
.... ....|..+..+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...++++++++|+
T Consensus 312 ~~~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~ 383 (457)
T 1kt0_A 312 SESF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383 (457)
T ss_dssp HHHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred HHHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 1111 1245667777788888888888777776 44554 778888888899999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCcchHHH-HHHHH
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQ-IRQIM 825 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~-~~~~m 825 (968)
+..++..|+.+|...|+++++.+ ..+.|
T Consensus 384 ~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 384 NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 34444
No 171
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.77 E-value=0.003 Score=66.81 Aligned_cols=229 Identities=12% Similarity=0.076 Sum_probs=156.8
Q ss_pred HHhcCChhhHHHHHHHhhhcCCcCCcch-HHHHHHHHhhhh-hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhc-C-C
Q 040643 571 FAQSGYCEGALQVFSQMTQVGVQANLYT-FGSVVSAAANLA-NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKC-G-S 646 (968)
Q Consensus 571 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~a~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~-g-~ 646 (968)
....+..++|++++.++... .|+..| ++.--......+ .++++..+...+++.. +-+..+|+.-...+.+. + +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 34445556788888887754 555544 333333444556 4788888888777654 34566677666666665 6 7
Q ss_pred HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCc--
Q 040643 647 IDDAKREFLEMP---EKNEVSWNAMITGFSQHGYAL--------EAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGL-- 712 (968)
Q Consensus 647 ~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~-- 712 (968)
++++.++++.+. .+|..+|+--...+.+.|..+ ++++.++++++ ..| |...|........+.|.
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~--~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR--VDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccccc
Confidence 889999999887 457778887666666656555 89999999999 567 45578887777777775
Q ss_pred -----HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCCh--------------------HHHHHHHHhCC-C----
Q 040643 713 -----VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCL--------------------SRAREFTEQMP-I---- 761 (968)
Q Consensus 713 -----~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~--------------------~eA~~~~~~m~-~---- 761 (968)
+++++++++.+... .|+ ...+.-+-.++.+.|+- .+..++..++. .
T Consensus 219 ~~~~~~~eELe~~~~aI~~---~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL---IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 78899998877643 565 45555566667666653 45556666652 1
Q ss_pred ---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-ccCCCCcchHHHHHH
Q 040643 762 ---EPDAMVWRTLLSACRVHKNMEIGEYAANHLL-ELEPEDSATYVLLSN 807 (968)
Q Consensus 762 ---~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~-~l~p~~~~~~~~l~~ 807 (968)
.+....+.-|+..+...|+.+.|..+.+.+. +.||-...++...+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR 345 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence 2568888888889999999999999999987 789987777765544
No 172
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.75 E-value=0.00021 Score=61.92 Aligned_cols=95 Identities=13% Similarity=0.047 Sum_probs=63.6
Q ss_pred ChhHHhHHhhHHHhcCCHHHHHHHHhcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hHHHHHH
Q 040643 630 ETEASNSLITLYAKCGSIDDAKREFLEMP---EKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN---HVTFVGV 703 (968)
Q Consensus 630 ~~~~~~~li~~y~k~g~~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd---~~t~~~l 703 (968)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|++..+ ..|+ ...+..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~l 82 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVIN--VIEDEYNKDVWAAK 82 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TSCCTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCcccchHHHHHHH
Confidence 34455666666777777777777776654 33566677777777777777777777777776 4454 3456666
Q ss_pred HHHHccc-CcHHHHHHHHHHhhhh
Q 040643 704 LSACSHV-GLVNEGLRYFESMSTE 726 (968)
Q Consensus 704 l~a~~~~-g~~~~a~~~~~~m~~~ 726 (968)
..++.+. |++++|.++|+.....
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 83 ADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6677777 7777777777766543
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.73 E-value=1.8e-05 Score=70.10 Aligned_cols=81 Identities=16% Similarity=0.135 Sum_probs=60.1
Q ss_pred hcCChHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHH
Q 040643 745 RAGCLSRAREFTEQM-PI---EPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRD 819 (968)
Q Consensus 745 r~G~~~eA~~~~~~m-~~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 819 (968)
..|++++|.+.+++. .. .|+ ..+|..|...+...|+++.|...++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356777777777765 34 354 5677777777888888888888888888888888888888888888889988888
Q ss_pred HHHHHH
Q 040643 820 QIRQIM 825 (968)
Q Consensus 820 ~~~~~m 825 (968)
...+..
T Consensus 82 ~~~~~a 87 (117)
T 3k9i_A 82 ELLLKI 87 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 865544
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.73 E-value=7.2e-05 Score=68.13 Aligned_cols=101 Identities=8% Similarity=-0.064 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHH
Q 040643 660 KNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYAC 738 (968)
Q Consensus 660 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~ 738 (968)
.+...|..+...+...|++++|+..|++.++ ..|+ ...+..+..++...|++++|..+|+...+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------------- 71 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALE------------- 71 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHh--hCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------
Confidence 3455666666666666666666666666665 3444 33455555555555555555555554432
Q ss_pred HHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 739 VVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
..|+ ..+|..+...+...|+.+.|...++++++++|+
T Consensus 72 ----------------------~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 72 ----------------------LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp ----------------------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ----------------------hCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 2232 556666666666777777777777777777776
No 175
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.71 E-value=7.6e-05 Score=66.49 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=33.8
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS 799 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~ 799 (968)
..|..+..++.+.|++++|.+.+++. .+.|+ ...|..|..++...|+.+.|...++++++++|+++
T Consensus 52 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 52 EAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 33444444444444444444444443 23443 55566666666677777777777777777777654
No 176
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.71 E-value=0.0001 Score=79.35 Aligned_cols=122 Identities=12% Similarity=-0.021 Sum_probs=88.1
Q ss_pred hHHhHHhhHHHhcCCHHHHHHHHhcCC--CC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 040643 632 EASNSLITLYAKCGSIDDAKREFLEMP--EK-N---------------EVSWNAMITGFSQHGYALEAINLFEKMKKHDV 693 (968)
Q Consensus 632 ~~~~~li~~y~k~g~~~~A~~~f~~~~--~~-d---------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 693 (968)
..+..+...|.+.|++++|...|++.. .| + ...|+.+...|...|++++|+..|++.++ +
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~--~ 225 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE--L 225 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h
Confidence 344555566666677777766666544 22 2 47888888999999999999999999988 6
Q ss_pred CCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHH-HHHHh
Q 040643 694 MPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAR-EFTEQ 758 (968)
Q Consensus 694 ~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~-~~~~~ 758 (968)
.|+ ...+..+..++...|++++|...|+...+. .|+ ...+..+..++.+.|+.++|. +++++
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~ 290 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQLAREKKLYAN 290 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 675 457888888888888888888888877543 454 556677777777777777774 34433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.68 E-value=0.00016 Score=64.83 Aligned_cols=93 Identities=9% Similarity=0.048 Sum_probs=71.3
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------cchHHHH
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED-------SATYVLL 805 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l 805 (968)
.|..++..+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++++++.|++ +..+..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4555666677777777777777665 2333 46677777777888888888888888888888876 7788999
Q ss_pred HHHHhhcCCcchHHHHHHHHHh
Q 040643 806 SNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 806 ~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+.+|...|++++|.+..+...+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 9999999999999988766554
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.68 E-value=7.9e-05 Score=68.65 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-------CCCCcchH----HHHHHHHhhcCCcchHHHHHHHHH
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-------EPEDSATY----VLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
+..|..+..++...|+++.|...+++++++ +|+++..| ..++.+|...|++++|....+...
T Consensus 57 a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 57 AFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 348888888889999999999999999999 99999999 999999999999999999766543
No 179
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.67 E-value=0.0001 Score=80.22 Aligned_cols=137 Identities=12% Similarity=0.042 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv 740 (968)
...|..+...|...|++++|++.|++.++ +.|+.. ..-..+++. .+.|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~--~~~~~~----------~~~~~~~~~----------~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLR--YVEGSR----------AAAEDADGA----------KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHHHHH----------HHSCHHHHG----------GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhhcCc----------cccChHHHH----------HHHHHHHHHHHHHH
Confidence 44688888888899999999999988876 222110 000011110 12232 45677888
Q ss_pred HHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchH
Q 040643 741 DLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCR 818 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 818 (968)
.+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...++++++++|++...+..|+.++...|+.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8888999999999888876 66665 778888888899999999999999999999999999999999999999888877
Q ss_pred HH
Q 040643 819 DQ 820 (968)
Q Consensus 819 ~~ 820 (968)
.+
T Consensus 361 ~k 362 (370)
T 1ihg_A 361 EK 362 (370)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.66 E-value=0.0014 Score=68.91 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCC----------HHHHHHHHhcCC---CCCHHHHHHHHHHHHhcC--C
Q 040643 613 KQGKQVHAMIIKTGYDSETEASNSLITLYAKCGS----------IDDAKREFLEMP---EKNEVSWNAMITGFSQHG--Y 677 (968)
Q Consensus 613 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~----------~~~A~~~f~~~~---~~d~~~~~~li~~~~~~g--~ 677 (968)
++|......++... +-+..+|+.--..+...|. ++++...++.+. .++..+|+--...+...| .
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 35666666666533 2233444443333333222 678888888776 568889998888888888 4
Q ss_pred HHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCc-HHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhc--------
Q 040643 678 ALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGL-VNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRA-------- 746 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~-------- 746 (968)
+++++++++++.+ ..|. ...|..-.....+.|. +++++++++.+.+. .|+ ...|.-...++.+.
T Consensus 126 ~~~EL~~~~k~l~--~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~ 200 (331)
T 3dss_A 126 WARELELCARFLE--ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGP 200 (331)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC----
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhcccccc
Confidence 8999999999999 6674 5577777777778887 69999999998764 454 44455555555544
Q ss_pred ------CChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CChhHHHHHHHHHHccCCCCcchHHHHHH
Q 040643 747 ------GCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVH-----------KNMEIGEYAANHLLELEPEDSATYVLLSN 807 (968)
Q Consensus 747 ------G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 807 (968)
+.++++++++++. -..|+ ..+|.-+-+..... +-++.+....+.+++++|++.-.+..++-
T Consensus 201 ~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~ 280 (331)
T 3dss_A 201 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIIL 280 (331)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHH
Confidence 5688999998887 45565 88997666665443 34788999999999999998544433332
Q ss_pred HHh---hcCCcchHHHHHHHHH
Q 040643 808 IYA---AAGKWDCRDQIRQIMK 826 (968)
Q Consensus 808 ~y~---~~g~~~~a~~~~~~m~ 826 (968)
+.. ..|..+++......++
T Consensus 281 ~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 281 LMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp HHHHHCTTTTHHHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHHHH
Confidence 221 2344445544444443
No 181
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.66 E-value=7.4e-05 Score=80.44 Aligned_cols=146 Identities=10% Similarity=-0.032 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
...|..+...+...|++++|+..|++.++ +.|+... +...|..+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 34577788888889999999999999887 5676542 234455555544332 125777888
Q ss_pred HHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh-hcCCcchH
Q 040643 742 LLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA-AAGKWDCR 818 (968)
Q Consensus 742 ~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~-~~g~~~~a 818 (968)
+|.+.|++++|.+.+++. .+.|+ ...|..+..++...|+++.|...++++++++|++...+..|+.+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999998888876 44554 7788888888889999999999999999999999999988888844 44566677
Q ss_pred HHHHHHHHh
Q 040643 819 DQIRQIMKD 827 (968)
Q Consensus 819 ~~~~~~m~~ 827 (968)
.++.+.|-+
T Consensus 319 ~~~~~~~l~ 327 (338)
T 2if4_A 319 KEMYKGIFK 327 (338)
T ss_dssp ---------
T ss_pred HHHHHHhhC
Confidence 666666543
No 182
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.63 E-value=0.00027 Score=69.27 Aligned_cols=92 Identities=8% Similarity=-0.067 Sum_probs=71.0
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC----CCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM----PIEPD--------------AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+..+...+.+.|++++|.+.+++. |-.|+ ..+|..+..++...|+++.|...++++++++|+
T Consensus 41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~ 120 (198)
T 2fbn_A 41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120 (198)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence 444455555556666665555543 22221 367888888899999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 798 DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 798 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
++.++..++.+|...|++++|.+..+...+
T Consensus 121 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 121 NVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999999997665543
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.61 E-value=0.00018 Score=67.25 Aligned_cols=61 Identities=10% Similarity=0.108 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVM-PNH----VTFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
+|..+...|...|++++|+..|++.++..-. ++. .++..+...+...|++++|.++|+...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666677777777777666542100 111 245555555666666666666665543
No 184
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.61 E-value=0.00011 Score=65.83 Aligned_cols=115 Identities=10% Similarity=-0.036 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV 740 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv 740 (968)
...|..+...+...|++++|+..|++..+ ..|+ ...+..+...+...|++++|..+|+...+.. |+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~-------- 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKE--LDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE-------- 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH--------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc--------
Confidence 34677777788888888888888888877 3454 4456666667777777777777776654331 11
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPD----AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
..++ ..+|..+...+...|+++.|....++++++.| ++.....+..++.
T Consensus 71 --------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 --------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp --------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred --------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0111 34455555556666667777777777777766 4555555555443
No 185
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.60 E-value=7e-05 Score=65.21 Aligned_cols=88 Identities=14% Similarity=-0.003 Sum_probs=72.6
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC------cchHHH
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPED------SATYVL 804 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 804 (968)
.+.+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 345666777788888888888887776 3445 47788888888999999999999999999999999 888899
Q ss_pred HHHHHhhcCCcchHHH
Q 040643 805 LSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 805 l~~~y~~~g~~~~a~~ 820 (968)
++.+|...|++++|.+
T Consensus 84 ~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHhHhhhHh
Confidence 9999999998887754
No 186
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00018 Score=80.60 Aligned_cols=159 Identities=5% Similarity=-0.126 Sum_probs=107.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhc---CCCCC-cc
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKH-DVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEY---GLVPK-PE 734 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~i~p~-~~ 734 (968)
++..+...|...|++++|++.+.++... +..++.. ....+...+...|..+++..+++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 3566778888888888888888877652 1112221 22333344556788888888877654321 22222 44
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC-------c
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-----P--IEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED-------S 799 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-----~--~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~-------~ 799 (968)
.+..++.+|...|++++|.+++++. . -.|. ..++..+...|...||++.|....++++.+.|.. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 6677888888889999988888765 1 1222 5567777777889999999999988888764322 2
Q ss_pred chHHHHHHHHhhcCCcchHHHHH
Q 040643 800 ATYVLLSNIYAAAGKWDCRDQIR 822 (968)
Q Consensus 800 ~~~~~l~~~y~~~g~~~~a~~~~ 822 (968)
..+..++.+|...|+|++|.+..
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH
Confidence 45667788889999999987743
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.59 E-value=0.00046 Score=61.83 Aligned_cols=108 Identities=13% Similarity=0.045 Sum_probs=59.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHH
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKHDVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDL 742 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~ 742 (968)
.+...+...|++++|++.|++..+ ..|+.. .+..+..++...|++++|..+|+...+. .|+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~---~p~---------- 71 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLE--LYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR---YPT---------- 71 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT----------
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH--HCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH---CCC----------
Confidence 344555566666666666666665 334322 4444444555555555555555544332 121
Q ss_pred HhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHH
Q 040643 743 LGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNI 808 (968)
Q Consensus 743 l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 808 (968)
.|. ..+|..+...+...|+.+.|....+++++..|+++.....+..+
T Consensus 72 -------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 72 -------------------HDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp -------------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred -------------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 111 34444555556667777777777777777777766555444433
No 188
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.57 E-value=0.00019 Score=67.13 Aligned_cols=128 Identities=15% Similarity=0.061 Sum_probs=99.9
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC----cchHHHHHHHHhhcCChHHHHHHHHhC----CCCCC----H
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK----PEHYACVVDLLGRAGCLSRAREFTEQM----PIEPD----A 765 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~----~~~y~~lv~~l~r~G~~~eA~~~~~~m----~~~p~----~ 765 (968)
.++..+...+...|++++|..+|+...+...-.++ ...+..+..++...|++++|.+.+++. +-.++ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 35777888899999999999999987554221222 246888999999999999999998875 11122 5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCC------CcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPE------DSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~------~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.++..+...+...|+.+.|...+++++++.+. .+..+..++.+|...|++++|.+..+..
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56777777789999999999999999987432 2457889999999999999999875544
No 189
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.56 E-value=0.00013 Score=77.88 Aligned_cols=461 Identities=12% Similarity=0.086 Sum_probs=276.1
Q ss_pred cccchhhHHhhhhCCCcchHHHhhhccCCCCccchHHHHHHHHhcCChhhHHHHHHHhHhCCCCCCcccHHHHHHHhhcC
Q 040643 45 QVLCDKFFNIYLTSGDLDSAMKIFDDMSKRTVFSWNKLISGFVAKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGS 124 (968)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 124 (968)
..+|+.|-.++.+.|+..+|+..|- +..|+..|..+|.+..+.|.+++.+..+...++..-.|. .=+.++-++++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhh
Confidence 4578888888888888888888774 445556688888888889999988888776665544343 334677788887
Q ss_pred CCccchhhhHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHH
Q 040643 125 GNVAVQCVNQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQ 204 (968)
Q Consensus 125 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 204 (968)
+.+. ..+.+. -.||..-...+-+-+-..|.++.|.-+|..++. |.-|...+.+-|++.+|.+.-++
T Consensus 130 ~rL~--elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN-----~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 130 NRLA--ELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp CSSS--TTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC-----CTTTSSSSSSCSGGGSSTTTTTT
T ss_pred CcHH--HHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc-----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 7766 322211 134554555666666777777777777776643 44555666777777777654332
Q ss_pred HHhcCCCCChhhHHHHHHhhcccCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCC---CCCcc
Q 040643 205 MHILGTVPTPYAISSALSACTKIELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQ---QRDGV 281 (968)
Q Consensus 205 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~---~~~~~ 281 (968)
.-++.||-.+-.+|...+.+..|...--.++-. + .-...|+..|-+.|.+++-..+|+.-. ....-
T Consensus 196 ------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEaglglErAHmG 264 (624)
T 3lvg_A 196 ------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEAALGLERAHMG 264 (624)
T ss_dssp ------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHH
T ss_pred ------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHH
Confidence 235678999999999998888765543333321 2 223456788999999999888888654 23555
Q ss_pred cHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHH
Q 040643 282 TYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYV 361 (968)
Q Consensus 282 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~ 361 (968)
.++-|.-.|++- ++++-.+.++..- +..-...+|++|....- |.-++-.|.
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~------sriNipKviracE~ahL----------------------W~ElvfLY~ 315 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFW------SRVNIPKVLRAAEQAHL----------------------WAELVFLYD 315 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSS------SSSCCTTTHHHHTTTTC----------------------HHHHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHH------HhccHHHHHHHHHHHhh----------------------HHHHHHHHh
Confidence 677777777765 5666555544321 12223456777765444 455566666
Q ss_pred hcCChhHHHHH--------Hhh-----CC--CCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhh
Q 040643 362 KCSDVETAYKF--------FLT-----TE--TENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTC 426 (968)
Q Consensus 362 ~~g~~~~A~~~--------f~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~ 426 (968)
+-.++|.|... |+. +. -.|+..|-..|.-|.+. .+.-++-+|.++
T Consensus 316 ~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e--------------------~P~lL~DLL~vL 375 (624)
T 3lvg_A 316 KYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--------------------KPLLLNDLLMVL 375 (624)
T ss_dssp HHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS--------------------CCTTSHHHHHHH
T ss_pred cchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh--------------------ChHHHHHHHHhc
Confidence 77777766432 111 11 13455555555555433 223355666666
Q ss_pred ccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHH-HHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHh
Q 040643 427 TSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWT-AMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISAC 505 (968)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 505 (968)
...=+.....+++...+++......+......|...-| ++-..|....+++.- +.-++.--.-|...+
T Consensus 376 ~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L----R~SId~ydNFD~i~L------- 444 (624)
T 3lvg_A 376 SPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL----RTSIDAYDNFDNISL------- 444 (624)
T ss_dssp CTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH----HHTTSSCCCSCTTHH-------
T ss_pred cccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH----HHHHHHhccccHHHH-------
Confidence 66666677777788888887777777776666655444 555666666665531 222221112222222
Q ss_pred hcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHH
Q 040643 506 AGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFS 585 (968)
Q Consensus 506 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~ 585 (968)
|.++-. ..-...-..-...|.+.++++++..+..+= -.|---|..-+.+|+.+-|.++++
T Consensus 445 --------A~rLEk-------HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD-----klykDAietAa~S~~~elaeeLL~ 504 (624)
T 3lvg_A 445 --------AQRLEK-------HELIEFRRIAAYLFKGNNRWKQSVELCKKD-----SLYKDAMQYASESKDTELAEELLQ 504 (624)
T ss_dssp --------HHHHHT-------CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT-----CCTTGGGTTTTTCCCTTHHHHHHH
T ss_pred --------HHHHhh-------CchHHHHHHHHHHHHhcccHHHHHHHHHhc-----ccHHHHHHHHHHcCCHHHHHHHHH
Confidence 221111 001111123345677778888776654321 123333444566777777777777
Q ss_pred HhhhcCCcCCcchHHHHHHHHhhhhhHHHHHH
Q 040643 586 QMTQVGVQANLYTFGSVVSAAANLANIKQGKQ 617 (968)
Q Consensus 586 ~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~ 617 (968)
-..+.| +...|...|-.|..+=+.+.+.+
T Consensus 505 yFv~~g---~~EcF~a~LytCYdLlrpDvVlE 533 (624)
T 3lvg_A 505 WFLQEE---KRECFGACLFTCYDLLRPDVVLE 533 (624)
T ss_dssp HHHHHC---STHHHHHHHHHTSSSSSCHHHHH
T ss_pred HHHHcC---chHHHHHHHHHHhhccChHHHHH
Confidence 776654 34457777777777655554444
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.54 E-value=5.3e-05 Score=67.03 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=41.4
Q ss_pred HHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 736 YACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 736 y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
+..+..+|.+.|++++|.+.+++. ...|+ ..+|..+..++...|+.+.|...+++++++.|+++........+..
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~ 106 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILF 106 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 333444444444444444444443 22333 5555566666667777777777777777777777655444433333
No 191
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.54 E-value=0.00031 Score=66.21 Aligned_cols=123 Identities=15% Similarity=0.042 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cc
Q 040643 662 EVSWNAMITGFSQHGYALEAINLFEKMKKH------DVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PE 734 (968)
Q Consensus 662 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~ 734 (968)
...|......+.+.|++++|+..|++.++. .-.|+...+ . .+.|. ..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~-----------------~---------~~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW-----------------V---------ELDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH-----------------H---------HHHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH-----------------H---------HHHHHHHH
Confidence 345677778888888888888888887762 001211100 0 00111 34
Q ss_pred hHHHHHHHHhhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCc-chHHHHHHHHh
Q 040643 735 HYACVVDLLGRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDS-ATYVLLSNIYA 810 (968)
Q Consensus 735 ~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 810 (968)
.|..+..+|.+.|++++|...+++. .+.|+ ...|..+..++...|+++.|...++++++++|+++ .....|..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 5666667777777777777776665 44554 67788888888899999999999999999999988 55666655443
No 192
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.50 E-value=0.00015 Score=81.55 Aligned_cols=131 Identities=11% Similarity=0.073 Sum_probs=75.5
Q ss_pred HHhcCCHHHHHHHHHHHHHC---CCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHh
Q 040643 672 FSQHGYALEAINLFEKMKKH---DVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLG 744 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~---g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~ 744 (968)
+...|++++|+.++++.++. -+-|++. +++.|..+|...|++++|..++++....+
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~----------------- 381 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGY----------------- 381 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------------
Confidence 44566666666666665531 1234321 34555555555555555555555432211
Q ss_pred hcCChHHHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHc-----cCCCCcch---HHHHHHHHhhcC
Q 040643 745 RAGCLSRAREFTEQM--PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLE-----LEPEDSAT---YVLLSNIYAAAG 813 (968)
Q Consensus 745 r~G~~~eA~~~~~~m--~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g 813 (968)
++. |-.|+ +.+++.|...+...|+++.|+...+++++ +.|+++.+ +..|...+...|
T Consensus 382 ------------~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 449 (490)
T 3n71_A 382 ------------MKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR 449 (490)
T ss_dssp ------------HHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 010 23333 44555555556666666666666666555 35666544 456778899999
Q ss_pred CcchHHHHHHHHHhCCCc
Q 040643 814 KWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 814 ~~~~a~~~~~~m~~~g~~ 831 (968)
++++|..+++.++++-.+
T Consensus 450 ~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 450 MFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 999999998888875533
No 193
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.49 E-value=0.00015 Score=77.93 Aligned_cols=110 Identities=9% Similarity=-0.051 Sum_probs=87.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVH 778 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~ 778 (968)
.+..+...+...|++++|...|+..... .|+.. .+...|+.+++...+.. .+|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 4566777889999999999999987543 34321 23345556666554432 3778888889999
Q ss_pred CChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 779 KNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
|+++.|...++++++++|++..+|..++.+|...|+|++|....+..
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877654
No 194
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.45 E-value=0.00026 Score=58.83 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=63.2
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYA 810 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 810 (968)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+.+.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 344555666677777777777776665 3344 36778888888889999999999999999999999999999999987
Q ss_pred hcC
Q 040643 811 AAG 813 (968)
Q Consensus 811 ~~g 813 (968)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 765
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.43 E-value=0.00036 Score=75.92 Aligned_cols=111 Identities=5% Similarity=-0.035 Sum_probs=80.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 040643 698 VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPD-AMVWRTLLSACR 776 (968)
Q Consensus 698 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~-~~~~~~ll~~~~ 776 (968)
..+..+...+...|++++|.+.|++..+.. |. ....-..+++. ...|. ..+|..+..++.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~----------~~~~~~~~~~~------~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EG----------SRAAAEDADGA------KLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HH----------HHHHSCHHHHG------GGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hc----------CccccChHHHH------HHHHHHHHHHHHHHHHHH
Confidence 346666777777788888877777664321 00 00000111111 12343 678888888899
Q ss_pred hcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 777 VHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 777 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..|+++.|...++++++++|+++.+|..++.+|...|++++|.+..+...+
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999997665543
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00081 Score=75.14 Aligned_cols=157 Identities=10% Similarity=-0.010 Sum_probs=117.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh----------------HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNH----------------VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP 733 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~----------------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~ 733 (968)
..+...|++++|++.|.+.++..-.... ..+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 4456789999999999998874211111 136778899999999999999999886654433332
Q ss_pred ----chHHHHHHHHhhcCChHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHcc------C
Q 040643 734 ----EHYACVVDLLGRAGCLSRAREFTEQM-------PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLEL------E 795 (968)
Q Consensus 734 ----~~y~~lv~~l~r~G~~~eA~~~~~~m-------~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l------~ 795 (968)
.....+..++...|++++|.++++.. ...+. ..++..|...+...|+++.|....+.++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 22344555666789999999888765 23333 677888888899999999999999988775 2
Q ss_pred CCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 796 PEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 796 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
|.....|..++.+|...|+|++|....+...
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 3345688999999999999999998755443
No 197
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.30 E-value=0.00059 Score=58.14 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH
Q 040643 764 DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK 826 (968)
Q Consensus 764 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 826 (968)
++.+|..+...+...|+++.|+..++++++++|+++.+|..|+.+|...|++++|.+..+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 477888898899999999999999999999999999999999999999999999998765543
No 198
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.30 E-value=0.0011 Score=74.60 Aligned_cols=63 Identities=5% Similarity=-0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
..+|..+..++...|+++.|...++++++++|+++.+|..++.+|...|+|++|....+...+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567888888899999999999999999999999999999999999999999999998776654
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.27 E-value=0.0009 Score=55.89 Aligned_cols=68 Identities=13% Similarity=0.066 Sum_probs=59.6
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCC
Q 040643 762 EPDAMVWRTLLSACRVHKN---MEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 762 ~p~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g 829 (968)
.+|+.+|..+..+....++ .+.|...++++++++|+++.+..+|++++...|+|++|...++.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3457888888888755554 7999999999999999999999999999999999999999999987754
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.27 E-value=0.00046 Score=60.57 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=63.5
Q ss_pred HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 751 RAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 751 eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
+|.+.+++. ...|+ ...|..+...+...|+++.|+..++++++++|+++..|..++.+|...|++++|....+...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555544 44554 778888888899999999999999999999999999999999999999999999997665543
No 201
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00041 Score=60.15 Aligned_cols=94 Identities=10% Similarity=0.091 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-------
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK------- 732 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~------- 732 (968)
+...|..+...+...|++++|++.|++.++ +.|+ ...+..+..++...|++++|...|+... .+.|+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~ 77 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGL---RYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---TSCSSTTSHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCCccHHHHH
Confidence 455677788888888888888888888887 5665 5567777788888888888888888765 34555
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
...+..+..++...|+.++|.+.++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 334555566666666666666655555
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.13 E-value=0.00021 Score=65.65 Aligned_cols=84 Identities=15% Similarity=0.103 Sum_probs=62.1
Q ss_pred hhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC----------hhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 744 GRAGCLSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKN----------MEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 744 ~r~G~~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
.|.+++++|.+.+++. ...|+ +..|..+..++...++ ++.|+..++++++++|+++.+|..|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 4556666676666655 34443 5555555555554443 5699999999999999999999999999998
Q ss_pred cC-----------CcchHHHHHHHHHh
Q 040643 812 AG-----------KWDCRDQIRQIMKD 827 (968)
Q Consensus 812 ~g-----------~~~~a~~~~~~m~~ 827 (968)
.| ++++|.+..++.-+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 85 89999997665544
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.03 E-value=0.00073 Score=75.88 Aligned_cols=92 Identities=7% Similarity=-0.074 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CCCC---cchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-----EPED---SATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..+++.|..+|...|+++.|+...++++++ .|++ +..|..|+.+|..+|+|++|..+.+...+-- ++
T Consensus 351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~-~~---- 425 (490)
T 3n71_A 351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAIL-LV---- 425 (490)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-HH----
Confidence 455666666667777777777666666654 4444 4577889999999999999999755443210 01
Q ss_pred cEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHH
Q 040643 837 SWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAE 874 (968)
Q Consensus 837 s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 874 (968)
+- ...||...++..+|.+...+++.
T Consensus 426 ------------~l-G~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 426 ------------TH-GPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp ------------HT-CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred ------------Hh-CCCChHHHHHHHHHHHHHHHHHH
Confidence 11 24799999999998888776654
No 204
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.00 E-value=0.0092 Score=62.94 Aligned_cols=136 Identities=15% Similarity=0.124 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC
Q 040643 659 EKNEVSWNAMITGFS--QHG---YALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK 732 (968)
Q Consensus 659 ~~d~~~~~~li~~~~--~~g---~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~ 732 (968)
..|...|...+.|.. ..+ ...+|+.+|++.++ ..|+. ..+..+..++.. +.. ++ |.
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~----------~~~----~~--~~ 252 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIV----------RHS----QH--PL 252 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH----------HHH----HS--CC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH----------Hhc----cC--CC
Confidence 346667777666543 333 35789999999999 88985 355555444430 000 01 11
Q ss_pred cchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhh
Q 040643 733 PEHYACVVDLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAA 811 (968)
Q Consensus 733 ~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 811 (968)
... +.-.+.+|.+-...++..| ++.+|.++.-.....|+++.|...++++++++| +...|++++.+|.-
T Consensus 253 ~~~---------~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~ 322 (372)
T 3ly7_A 253 DEK---------QLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEM 322 (372)
T ss_dssp CHH---------HHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred chh---------hHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Confidence 000 0001122333223333233 355666655555556777777777777777775 35566677777777
Q ss_pred cCCcchHHHHH
Q 040643 812 AGKWDCRDQIR 822 (968)
Q Consensus 812 ~g~~~~a~~~~ 822 (968)
.|++++|.+..
T Consensus 323 ~G~~~eA~e~~ 333 (372)
T 3ly7_A 323 KGMNREAADAY 333 (372)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77777776643
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.99 E-value=0.00048 Score=63.24 Aligned_cols=106 Identities=14% Similarity=0.115 Sum_probs=65.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHH----------HHHHHHHHhhhhcCCCCC-cchHHHHH
Q 040643 673 SQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVN----------EGLRYFESMSTEYGLVPK-PEHYACVV 740 (968)
Q Consensus 673 ~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~----------~a~~~~~~m~~~~~i~p~-~~~y~~lv 740 (968)
.+.+.+++|++.+++..+ +.|+ ...+..+..++...|.++ +|+..|++.. .+.|+ .+.|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~--l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL---~ldP~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL---LIDPKKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH---HHCTTCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH---HhCcCcHHHHHHHH
Confidence 456678888888888888 6775 456777777777776543 4444444432 22443 33444444
Q ss_pred HHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHH
Q 040643 741 DLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVL 804 (968)
Q Consensus 741 ~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 804 (968)
.+|...|++ .|+... ..|+++.|...++++++++|++..+...
T Consensus 88 ~ay~~lg~l------------~P~~~~---------a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 88 NAYTSFAFL------------TPDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHH------------CCCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHhccc------------Ccchhh---------hhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 444443332 232110 1258999999999999999988644433
No 206
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.98 E-value=0.00052 Score=75.92 Aligned_cols=91 Identities=12% Similarity=0.130 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CCCC---cchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-----EPED---SATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..+++.|..+|...|+++.|+...++++++ .|++ +..|..|+.+|..+|++++|..+.+...+- .++
T Consensus 329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i-~~~---- 403 (429)
T 3qwp_A 329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI-MRV---- 403 (429)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHH----
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHH----
Confidence 445566666666667777666666666653 3444 456778999999999999999865544321 001
Q ss_pred cEEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHH
Q 040643 837 SWIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVA 873 (968)
Q Consensus 837 s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 873 (968)
+-...||...+++..|++...+|+
T Consensus 404 -------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 404 -------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp -------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred -------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 113479999999999999888776
No 207
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.84 E-value=0.0011 Score=70.96 Aligned_cols=427 Identities=11% Similarity=0.128 Sum_probs=222.8
Q ss_pred CccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhHHHHHHhhcc
Q 040643 147 SPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAISSALSACTK 226 (968)
Q Consensus 147 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 226 (968)
.+.+|+.|..++.+.|...+|...| +...|...|..+|.+..+.|.+++-+..+...++..-.| ..=+.++-++++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence 3456666666666666666665554 233344455666666666666666666554444332222 222344445555
Q ss_pred cCchHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHh
Q 040643 227 IELFEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKM 306 (968)
Q Consensus 227 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 306 (968)
.+++.+-+.+.. .|++.-....-+-+...|.++.|.-+|..+. -|.-|.+.+.+-|++..|.+.-++
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is-----N~akLAstLV~L~~yq~AVdaArK- 195 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARK- 195 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC-----CCTTTSSSSSSCSGGGSSTTTTTT-
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc-----cHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 544433322221 2333333333444444444444444444332 233333334444444444433221
Q ss_pred hccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCC---CCCcch
Q 040643 307 QLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTE---TENVVL 383 (968)
Q Consensus 307 ~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~ 383 (968)
.-+..||--+-.+|...+.+..|...--.++-.. .-...|+..|-..|.+++-+.+++.-. ......
T Consensus 196 -----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglglErAHmGm 265 (624)
T 3lvg_A 196 -----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGLERAHMGM 265 (624)
T ss_dssp -----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHH
T ss_pred -----cCChhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHH
Confidence 2356678888888888877776655433333221 123345667777788887777776533 345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHH-----------
Q 040643 384 WNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEIL----------- 452 (968)
Q Consensus 384 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~----------- 452 (968)
|+-|.-.|++-. +++.++-++ .--+..-...+|++|....-|.++.-+|.+...++.|....
T Consensus 266 FTELaILYsKY~-PeKlmEHlk------lf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~ 338 (624)
T 3lvg_A 266 FTELAILYSKFK-PQKMREHLE------LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEG 338 (624)
T ss_dssp HHHHHHHHHSSC-TTHHHHHHT------TSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGG
T ss_pred HHHHHHHHHhcC-HHHHHHHHH------HHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHH
Confidence 777777776653 333222222 22234445567888888888888888888777777664332
Q ss_pred --hhCC--CCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCC
Q 040643 453 --RRLP--EDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSD 528 (968)
Q Consensus 453 --~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~ 528 (968)
.... ..|+..|-.-|.-|.+.. +..--+++.-+.. .+.++ .+++-..+.+++...+..+..+... .
T Consensus 339 ~Fkdii~KVaN~EiyYKAi~FYL~e~-P~lL~DLL~vL~p-rlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~---N 408 (624)
T 3lvg_A 339 QFKDIITKVANVELYYRAIQFYLEFK-PLLLNDLLMVLSP-RLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNH---N 408 (624)
T ss_dssp GGTTTGGGCSCSHHHHHHHHHHTTSC-CTTSHHHHHHHCT-TCCST-----TTHHHHHTTTCGGGGTGGGTSCCCS---C
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHhC-hHHHHHHHHhccc-cCChH-----HHHHHHHhcCCchhhHHHHHHHHHh---h
Confidence 1111 135555555555555432 2222233333211 11111 2334445566666666555444332 2
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCccc------------HHHH-HHHHHhcCChhhHHHHHHHhhhcCCcCC
Q 040643 529 DLSIGNALISLYARCGRIQEAYLVFNKIDAKDNIS------------WNGL-ISGFAQSGYCEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~------------~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~ 595 (968)
+..+-.++-+.|....+++.-+.-.+.-..-|.+. +..+ ..-|.++++|++++++.++ .
T Consensus 409 ~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~Kk---D----- 480 (624)
T 3lvg_A 409 NKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKK---D----- 480 (624)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSST---T-----
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHHh---c-----
Confidence 44566678888888888776655544333223222 2222 2345677778777765432 1
Q ss_pred cchHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Q 040643 596 LYTFGSVVSAAANLANIKQGKQVHAMIIKTG 626 (968)
Q Consensus 596 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g 626 (968)
..|--.+...+..++.+.+..++...++.|
T Consensus 481 -klykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 481 -SLYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp -CCTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred -ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 112223344566777777888887777765
No 208
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.74 E-value=0.0079 Score=69.21 Aligned_cols=133 Identities=14% Similarity=0.107 Sum_probs=110.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHH-HHHHHHHHcccCc----------HHHHHHHHHHhhhhcCCCCC-cchHHHHHHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVT-FVGVLSACSHVGL----------VNEGLRYFESMSTEYGLVPK-PEHYACVVDL 742 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~ 742 (968)
....++|++.++++++ +.|+..| |+.--.++.+.|. +++++++++.+.+. .|. ...|..-..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3456789999999999 8898654 6666666666666 99999999998764 555 5566667778
Q ss_pred HhhcC--ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-ChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 743 LGRAG--CLSRAREFTEQM-PIEP-DAMVWRTLLSACRVHK-NMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 743 l~r~G--~~~eA~~~~~~m-~~~p-~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
+.+.| ++++|.++++++ ...| |..+|..--......| ..+.+....+++++.+|.|..+|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 88899 779999999998 5555 4899998888888888 889999999999999999999999999998885
No 209
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.61 E-value=0.0024 Score=55.85 Aligned_cols=63 Identities=13% Similarity=0.025 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+...|..+...|...|++++|+..|++.++ ..|+ ...+..+..++...|++++|..+|+...+
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALD--FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 556666666777777777777777777666 4554 34566666666667777777776665543
No 210
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.59 E-value=0.0048 Score=52.29 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=48.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhh
Q 040643 661 NEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMST 725 (968)
Q Consensus 661 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 725 (968)
+...|..+...|...|++++|++.|++.++ ..|+ ...+..+..++...|++++|.+.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVE--TDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 566778888888888888888888888887 5665 44677777788888888888888876643
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.59 E-value=0.0012 Score=72.68 Aligned_cols=85 Identities=8% Similarity=0.095 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHcc-----CC---CCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLEL-----EP---EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQ 836 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-----~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~ 836 (968)
..+++.|..+|...|+++.|+...++++++ .| +-+..|..|+.+|..+|++++|..+.+...+-- .+
T Consensus 340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~-~~---- 414 (433)
T 3qww_A 340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM-EV---- 414 (433)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HH----
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HH----
Confidence 344445555555555555555555555543 33 344567888999999999999988655443210 01
Q ss_pred cEEEEcCEEEEEecCCCCCcchHHHHHHHHH
Q 040643 837 SWIEVKNSIHAFFVGDRLHPLADKIYDYLGN 867 (968)
Q Consensus 837 s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 867 (968)
+-...||...+++..|++
T Consensus 415 -------------~lG~~Hp~~~~l~~~l~~ 432 (433)
T 3qww_A 415 -------------AHGKDHPYISEIKQEIES 432 (433)
T ss_dssp -------------HTCTTCHHHHHHHHHHHC
T ss_pred -------------HcCCCChHHHHHHHHHhc
Confidence 113469988888877653
No 212
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.52 E-value=0.0071 Score=54.91 Aligned_cols=111 Identities=11% Similarity=-0.062 Sum_probs=62.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhh----cCChH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGR----AGCLS 750 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r----~G~~~ 750 (968)
.++.++|++.|++..+.| .|+.. |...+...+.+++|.++|++..+. -+...+..|..+|.+ .++++
T Consensus 8 ~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHH
T ss_pred ccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHH
Confidence 346778888888888876 44433 666677777788888888876543 234445555555555 55666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHcc
Q 040643 751 RAREFTEQMPIEPDAMVWRTLLSACRV----HKNMEIGEYAANHLLEL 794 (968)
Q Consensus 751 eA~~~~~~m~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~l 794 (968)
+|.+++++.--.-++..+..|...+.. .+|.+.|....+++.++
T Consensus 79 ~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 79 KAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 666665554212233333333333333 34444555444444444
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.27 E-value=0.012 Score=64.76 Aligned_cols=50 Identities=10% Similarity=0.117 Sum_probs=29.7
Q ss_pred hcCCHHHHHHHHHHHHH---CCCCCCh----HHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 674 QHGYALEAINLFEKMKK---HDVMPNH----VTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~---~g~~Pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
..|++++|+.++++.++ .-+-|++ .+++.|..+|...|++++|..++++.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a 366 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI 366 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 45667777777776654 2234543 24555666666666666666666554
No 214
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.20 E-value=0.011 Score=48.46 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+..+...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 567778888899999999999999999999999999999999999999999999997665543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.18 E-value=0.012 Score=49.40 Aligned_cols=64 Identities=19% Similarity=0.182 Sum_probs=51.5
Q ss_pred HHHHHhhcCChHHHHHHHHhC-CCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 739 VVDLLGRAGCLSRAREFTEQM-PIEPD-AM-VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 739 lv~~l~r~G~~~eA~~~~~~m-~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.+..+.+.|++++|.+.+++. ...|+ .. .|..+...+...|+.+.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 456677788888888888776 44554 56 777787788889999999999999999999988776
No 216
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.12 E-value=0.051 Score=49.09 Aligned_cols=108 Identities=7% Similarity=-0.074 Sum_probs=69.6
Q ss_pred hhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 040643 610 ANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQ----HGYALEAINL 684 (968)
Q Consensus 610 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~----~g~~~~A~~l 684 (968)
.+.++|...+....+.| .++.. |..+|...+.+++|.+.|++.. ..++.+++.|...|.. .++.++|++.
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 35566666666666655 22222 6666666667777777777654 4466677777777766 6777888888
Q ss_pred HHHHHHCCCCCChHHHHHHHHHHcc----cCcHHHHHHHHHHhhh
Q 040643 685 FEKMKKHDVMPNHVTFVGVLSACSH----VGLVNEGLRYFESMST 725 (968)
Q Consensus 685 ~~~m~~~g~~Pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~ 725 (968)
|++..+.| +......|...+.. .++.++|.++|+...+
T Consensus 84 ~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 84 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 88777754 44455556566655 6777777777776643
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.10 E-value=0.021 Score=60.24 Aligned_cols=70 Identities=21% Similarity=0.072 Sum_probs=46.1
Q ss_pred HHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEE--EEcCEEEEEecCCCCCcchHHHHHHHHH
Q 040643 790 HLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWI--EVKNSIHAFFVGDRLHPLADKIYDYLGN 867 (968)
Q Consensus 790 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i--~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 867 (968)
..++++|.++..|..++.++...|++++|....++.-..+ | ||. ...|+++. ..|+ +.++.+.|..--+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln----~--s~~a~~llG~~~~-~~G~--~~eA~e~~~~Alr 338 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE----M--SWLNYVLLGKVYE-MKGM--NREAADAYLTAFN 338 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----C--CHHHHHHHHHHHH-HTTC--HHHHHHHHHHHHH
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC----C--CHHHHHHHHHHHH-HCCC--HHHHHHHHHHHHh
Confidence 4557889999999999999999999999999766665543 3 232 23344432 3344 4556666555444
Q ss_pred H
Q 040643 868 L 868 (968)
Q Consensus 868 l 868 (968)
|
T Consensus 339 L 339 (372)
T 3ly7_A 339 L 339 (372)
T ss_dssp H
T ss_pred c
Confidence 4
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.099 Score=63.46 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=34.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
....+|++++|.++.+.+. +...|..+...+.+.|+.+.|.+.|.++..
T Consensus 661 ~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d 709 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD 709 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred hhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence 4456777777777766653 456777777777777777777777777643
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.03 E-value=0.024 Score=62.51 Aligned_cols=58 Identities=16% Similarity=0.224 Sum_probs=39.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChH----HHHHHHHHHcccCcHHHHHHHHHHhh
Q 040643 667 AMITGFSQHGYALEAINLFEKMKKH---DVMPNHV----TFVGVLSACSHVGLVNEGLRYFESMS 724 (968)
Q Consensus 667 ~li~~~~~~g~~~~A~~l~~~m~~~---g~~Pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~ 724 (968)
..+..+...|++++|++++++.++. -+.|++. ++..+..+|...|++++|..++++..
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L 356 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTM 356 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 3355566778888888888888753 2345532 56667777777788888777777654
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.68 E-value=0.24 Score=59.98 Aligned_cols=129 Identities=16% Similarity=0.173 Sum_probs=81.3
Q ss_pred HHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChh
Q 040643 499 SSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCE 578 (968)
Q Consensus 499 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~ 578 (968)
..++..+.+.+..+.|.++.... ..-......+|++++|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~------------~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ------------DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH------------HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCCCc------------chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 44445555555555555444211 122455678999999999987774 4578999999999999999
Q ss_pred hHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhc
Q 040643 579 GALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLE 656 (968)
Q Consensus 579 ~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~ 656 (968)
.|.+.|.++.. |..+...+...++.+....+-..+...| -++.-...|.++|++++|.+++.+
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999998764 2344444444666665555544444433 123334456667777777655433
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.42 E-value=0.18 Score=45.54 Aligned_cols=94 Identities=16% Similarity=0.051 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccC---cHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVG---LVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
..+.+-|.+..+.|. |+..+-..+..++.++. ++++|..+|+...+.. .|+ .
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~-~--------------------- 69 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKE-E--------------------- 69 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHH-H---------------------
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--Ccc-c---------------------
Confidence 455566666666553 56666666777777777 6778888888765431 121 0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
+...+-.|.-++.+.||++.|.+.++++++++|+|..+..+.
T Consensus 70 --------~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 70 --------QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp --------HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred --------hHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 122333555567888999999999999999999888776654
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=95.16 E-value=0.028 Score=47.04 Aligned_cols=56 Identities=21% Similarity=0.307 Sum_probs=50.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHccCCCCcc-hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 772 LSACRVHKNMEIGEYAANHLLELEPEDSA-TYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 772 l~~~~~~g~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
...+...|+++.|...++++++++|+++. .+..++.+|...|++++|.+..+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34567789999999999999999999999 999999999999999999997666544
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.67 E-value=0.04 Score=55.59 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=61.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCChhHHHHHHHHHHccCCCC-cchHHHHHHHHhhc-CCcch
Q 040643 749 LSRAREFTEQM-PIEPD---AMVWRTLLSACRV-----HKNMEIGEYAANHLLELEPED-SATYVLLSNIYAAA-GKWDC 817 (968)
Q Consensus 749 ~~eA~~~~~~m-~~~p~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~ 817 (968)
+.+|...+++. .+.|+ ...|..|...|.. -|+.+.|+..+++++++.|+. ..+++.++..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34444444444 44555 5566666666655 489999999999999999974 89999999988884 88898
Q ss_pred HHHHHHHHHhCCCccCCc
Q 040643 818 RDQIRQIMKDRGVKKEPG 835 (968)
Q Consensus 818 a~~~~~~m~~~g~~k~~g 835 (968)
+.+..+....-..+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 888766665555443344
No 224
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.50 E-value=1.5 Score=38.06 Aligned_cols=141 Identities=12% Similarity=0.094 Sum_probs=92.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHH
Q 040643 672 FSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSR 751 (968)
Q Consensus 672 ~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~e 751 (968)
+...|..++..++..+..... +.--++-++--...+-+-+--.+.++++-+-|.+.|-.. .-.+|..|.+.|...|
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~N-lKrVi~C~~~~n~~se 92 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQN-LKSVVECGVINNTLNE 92 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSC-THHHHHHHHHTTCCCH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhc-HHHHHHHHHHhcchHH
Confidence 345677778888877776521 222333333333334445555666666655555554321 2334555555554433
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
-. ..-|.....+|..+.-+.+...++.-+|-++...+-+++.|.+.|.-.+|.++++..-++|++
T Consensus 93 ~v---------------d~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 93 HV---------------NKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HH---------------HHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HH---------------HHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 22 334566677888888888888877778889999999999999999999999999999899985
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.33 E-value=0.13 Score=43.64 Aligned_cols=69 Identities=17% Similarity=0.104 Sum_probs=47.5
Q ss_pred HHHHHHhhcCChHHHHHHHHhC---------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM---------PIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m---------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.|+..+.+.|+++.|...++.. +-.+...++..|..++...|+++.|....+++++++|++..+...+.
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 3444444445444444444432 01234778888888999999999999999999999999977654443
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.27 E-value=0.6 Score=43.32 Aligned_cols=128 Identities=14% Similarity=0.121 Sum_probs=73.2
Q ss_pred HHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHH
Q 040643 640 LYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRY 719 (968)
Q Consensus 640 ~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~ 719 (968)
.-..+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+.
T Consensus 14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence 345677777777776655 3566788888888888888888887777544 33444444555665544433
Q ss_pred HHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 040643 720 FESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHL 791 (968)
Q Consensus 720 ~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 791 (968)
-+....+ .-++.-...+.-.|+++++.+++.+...-|.+.. ..+.+|--+.|+++.+.+
T Consensus 83 a~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 83 QNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 3222111 1133333444556777777777666543332221 134566666666665543
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=93.97 E-value=0.16 Score=41.93 Aligned_cols=68 Identities=12% Similarity=0.004 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHhhcCC---hHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCC
Q 040643 731 PKPEHYACVVDLLGRAGC---LSRAREFTEQM-PIEPD-AMVWRTLLSACRVHKNMEIGEYAANHLLELEPED 798 (968)
Q Consensus 731 p~~~~y~~lv~~l~r~G~---~~eA~~~~~~m-~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~ 798 (968)
++++.+..+..++...+. .++|..++++. ...|+ ...+..|...+...|+++.|....+++++.+|++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 345666777776654444 57788777776 56666 5555555566788888888888888888888873
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=93.95 E-value=0.24 Score=44.82 Aligned_cols=90 Identities=11% Similarity=0.023 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhcC---ChhHHHHHHHHHHccC-C-CCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCccc
Q 040643 763 PDAMVWRTLLSACRVHK---NMEIGEYAANHLLELE-P-EDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQS 837 (968)
Q Consensus 763 p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s 837 (968)
++..+.-.+..+....+ ++++|....+.+++.+ | ++...++.|+-.|++.|++++|.+..+..-+. +
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i----e---- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT----E---- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----C----
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----C----
Confidence 56677777777776666 6779999999999999 7 56889999999999999999999987766542 2
Q ss_pred EEEEcCEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcc
Q 040643 838 WIEVKNSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYV 878 (968)
Q Consensus 838 ~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~ 878 (968)
|...+.....+.+..++++.|.+
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~ 124 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLV 124 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHH
Confidence 43444445556666778887764
No 229
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.54 E-value=0.87 Score=45.97 Aligned_cols=111 Identities=12% Similarity=0.102 Sum_probs=76.2
Q ss_pred cCCHHHHHHHHhcCCCCC--HHHHHHHHHH-HHhc--C------CHHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHcc
Q 040643 644 CGSIDDAKREFLEMPEKN--EVSWNAMITG-FSQH--G------YALEAINLFEKMKKHDVMPN---HVTFVGVLSACSH 709 (968)
Q Consensus 644 ~g~~~~A~~~f~~~~~~d--~~~~~~li~~-~~~~--g------~~~~A~~l~~~m~~~g~~Pd---~~t~~~ll~a~~~ 709 (968)
.|+..+-.+.+.+..+.| ...|..++.+ ++.. | ...+|..++++.++ +.|+ ...+..+...|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHh
Confidence 344445555566665443 4578777764 3332 3 35678888888888 7887 3467777777777
Q ss_pred -----cCcHHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhc-CChHHHHHHHHhC
Q 040643 710 -----VGLVNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRA-GCLSRAREFTEQM 759 (968)
Q Consensus 710 -----~g~~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~-G~~~eA~~~~~~m 759 (968)
-|+.++|.++|++.. .+.|+ +.++....+.|++. |+.++|.+.+++.
T Consensus 212 vPp~~gGd~ekA~~~ferAL---~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLT---RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHH---HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 488899998888775 34673 77777788888774 7788887777765
No 230
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.23 E-value=19 Score=41.08 Aligned_cols=262 Identities=9% Similarity=0.049 Sum_probs=140.9
Q ss_pred hhhhhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh
Q 040643 531 SIGNALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA 610 (968)
Q Consensus 531 ~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 610 (968)
.+-+.-+..+.+.+++.....++.. +..+...--....+....|+..+|....+++-..| .........++..+.+.|
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g 150 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASG 150 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCC
Confidence 3334556677788888888886666 33344333445666777788888888777777665 233445566666666554
Q ss_pred hHHHH--HHHHHHHHHhC-----------CCCCh-hHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHH---HHHHHHHHHH
Q 040643 611 NIKQG--KQVHAMIIKTG-----------YDSET-EASNSLITLYAKCGSIDDAKREFLEMPEKNEV---SWNAMITGFS 673 (968)
Q Consensus 611 ~~~~a--~~~~~~~~~~g-----------~~~~~-~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~ 673 (968)
.+... .+=...+...| ++++. ....+++..+.+ ...+....... .++.. ....-+.-++
T Consensus 151 ~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~~~-~~~~~~~~~~~~~~~rla 226 (618)
T 1qsa_A 151 KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFARTT-GATDFTRQMAAVAFASVA 226 (618)
T ss_dssp CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHhcc-CCChhhHHHHHHHHHHHH
Confidence 33221 11112222211 11111 122233332222 22222222221 11211 1111222333
Q ss_pred hcCCHHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChH
Q 040643 674 QHGYALEAINLFEKMKKHD-VMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLS 750 (968)
Q Consensus 674 ~~g~~~~A~~l~~~m~~~g-~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~ 750 (968)
+ .+.+.|..+|....+.+ +.+... ....+.......+...++..++...... .++.....-.+....|.|+++
T Consensus 227 r-~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~ 302 (618)
T 1qsa_A 227 R-QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRR 302 (618)
T ss_dssp H-HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHH
T ss_pred h-cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHH
Confidence 3 38899999999887543 322222 2233333445555466777777765332 233223334444555889999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHH-HHHHhcCChhHHHHHHHHHHccCCCCcchHHHHH
Q 040643 751 RAREFTEQMPIEP-DAMVWRTLL-SACRVHKNMEIGEYAANHLLELEPEDSATYVLLS 806 (968)
Q Consensus 751 eA~~~~~~m~~~p-~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 806 (968)
.|...|+.|+-.+ +..-|.--+ .+....|+.+.|....+++.+ + .+.|-.|+
T Consensus 303 ~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 303 GLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp HHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred HHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 9999999997554 323333222 245678999999999999875 3 35666553
No 231
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.19 E-value=1 Score=52.56 Aligned_cols=52 Identities=12% Similarity=-0.000 Sum_probs=48.7
Q ss_pred HHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 774 ACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 774 ~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
-|...|++++|..+|+++...-|.+-.+|..|+.+|...|+|+.|.-....+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3678899999999999999999999999999999999999999999887766
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=92.10 E-value=6.6 Score=36.38 Aligned_cols=105 Identities=15% Similarity=0.172 Sum_probs=66.8
Q ss_pred HHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHH
Q 040643 537 ISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGK 616 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~ 616 (968)
.+.-.++|+++.|.++.+.+ .+...|..+.....+.|+++-|.+.|.+... +..++--+...|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556789999998888776 4566899999999999999999998888754 233444445556655555
Q ss_pred HHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCC
Q 040643 617 QVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMP 658 (968)
Q Consensus 617 ~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~ 658 (968)
.+-......| -+|.-...+.-.|+++++.++|.+..
T Consensus 81 kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 81 KMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 4444444433 11222333444566666666665544
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=90.84 E-value=2.9 Score=36.26 Aligned_cols=94 Identities=16% Similarity=0.085 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHH---HHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHH
Q 040643 679 LEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNE---GLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREF 755 (968)
Q Consensus 679 ~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~---a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~ 755 (968)
..+.+-|.+....|. |+..|-..+..++.|+..... |+.+++...+. + .|. .-
T Consensus 18 ~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~------------------~~--- 73 (126)
T 1nzn_A 18 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKE------------------EQ--- 73 (126)
T ss_dssp HHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHH------------------HH---
T ss_pred HHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-Ccc------------------hH---
Confidence 344455555555443 666666667777888776555 77777766432 0 120 00
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 756 TEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 756 ~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
-...-.|.-++.+.|+++.|.+..+.+++.+|+|..+..+.
T Consensus 74 ---------Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 74 ---------RDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp ---------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 01112345568888999999999999999999888766654
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=88.05 E-value=1.1 Score=37.74 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=30.4
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcCC-----CCCcchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYGL-----VPKPEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD 764 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~i-----~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~ 764 (968)
.+...+...|+++.|..+|+...+...- .+....|..++.++.+.|++++|..++++. .+.|+
T Consensus 10 ~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 3444444444444444444443332210 112344555566666666666666666655 34454
No 235
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=83.77 E-value=14 Score=32.53 Aligned_cols=73 Identities=8% Similarity=-0.029 Sum_probs=34.4
Q ss_pred CCCcchHHHHHHHHhhcCChH---HHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchH
Q 040643 730 VPKPEHYACVVDLLGRAGCLS---RAREFTEQM-PIEP-DAM-VWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATY 802 (968)
Q Consensus 730 ~p~~~~y~~lv~~l~r~G~~~---eA~~~~~~m-~~~p-~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 802 (968)
.|+.++--....+|.++.+.+ ++..++++. .-.| +.. ..--|.-++.+.||++.|.+..+.+++.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 355555445555555555433 344444443 1122 111 111233345555666666666666666666554443
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=83.15 E-value=23 Score=30.93 Aligned_cols=136 Identities=10% Similarity=0.053 Sum_probs=79.0
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhh---hhHHHHHHHcCCHH
Q 040643 471 VQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIG---NALISLYARCGRIQ 547 (968)
Q Consensus 471 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~---~~Li~~y~k~g~~~ 547 (968)
.-.|..++..++..+..... +..-++.+|--....-+-+...++++. -|-..|.... ..++..|++.|.
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~---IGkiFDis~C~NlKrVi~C~~~~n~-- 89 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDK---IGSYFDLDKCQNLKSVVECGVINNT-- 89 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHH---HGGGSCGGGCSCTHHHHHHHHHTTC--
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHH---HhhhcCcHhhhcHHHHHHHHHHhcc--
Confidence 34577888888888876542 222333333332222232333333322 2222232211 234444444443
Q ss_pred HHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCC
Q 040643 548 EAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGY 627 (968)
Q Consensus 548 ~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~ 627 (968)
+..-.+.-++.....|+-++--++..++.. +.+|+......+.+|+.+.|+..++.+++..+-+.|+
T Consensus 90 ------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 90 ------------LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred ------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 222334456777888888888888888644 3467777777888888999999888888888888774
No 237
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.69 E-value=8 Score=31.67 Aligned_cols=68 Identities=12% Similarity=0.223 Sum_probs=51.3
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCc
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVK 831 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~ 831 (968)
++.-+-.+.+.|++.+..+-|.|||.-+|+..|.+..+-+-..-.+....|-.+. .+++-.+.+-|+.
T Consensus 32 glN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l------------qElkPtl~ELGI~ 99 (109)
T 1v54_E 32 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGIS 99 (109)
T ss_dssp HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTCC
T ss_pred HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH------------HHHhhHHHHhCCC
Confidence 3333444578999999999999999999999999999988776655555555442 4667777777764
No 238
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=82.43 E-value=48 Score=34.17 Aligned_cols=92 Identities=11% Similarity=0.040 Sum_probs=50.9
Q ss_pred HHHHhcCCCCChhhHHHHHHHhhcccch-----hhhhhhhHhhhhhc--CCCCchhhhhHHHHHHHcCCHHHHHHHHHhC
Q 040643 484 EEMENQGIQSDNIGFSSAISACAGIQAL-----NQGRQIHAQSYISG--FSDDLSIGNALISLYARCGRIQEAYLVFNKI 556 (968)
Q Consensus 484 ~~m~~~g~~pd~~t~~~ll~a~~~~~~~-----~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m 556 (968)
+-..+.++++|..+...++..+.....- .-..+...+..+.| ..-|+.+...+...|.+.+++.+|+.-|---
T Consensus 83 evy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg 162 (336)
T 3lpz_A 83 DTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLG 162 (336)
T ss_dssp HHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhc
Confidence 4444556666666665555555443321 11222333333433 3446777788889999999999999888432
Q ss_pred CCCCcccHHHHHHHHHhcC
Q 040643 557 DAKDNISWNGLISGFAQSG 575 (968)
Q Consensus 557 ~~~d~~~~~~li~~~~~~g 575 (968)
..+....+..|+.-+.+.+
T Consensus 163 ~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 163 TKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTHHHHHHHHHHHHHHTS
T ss_pred CCchHHHHHHHHHHHHHhc
Confidence 2222245544544444433
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=80.87 E-value=8.2 Score=45.06 Aligned_cols=52 Identities=10% Similarity=0.021 Sum_probs=44.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHcccCcHHHHHHHHHHh
Q 040643 670 TGFSQHGYALEAINLFEKMKKHDVMPNH-VTFVGVLSACSHVGLVNEGLRYFESM 723 (968)
Q Consensus 670 ~~~~~~g~~~~A~~l~~~m~~~g~~Pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m 723 (968)
.-+...|+++-|+++.++... ..|+. .||..|...|.+.|+++.|+-.++++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345567899999999999988 78875 58999999999999999999999887
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.62 E-value=21 Score=31.49 Aligned_cols=69 Identities=10% Similarity=0.023 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHcccCc---HHHHHHHHHHhhhhcCCCCC--cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCCH
Q 040643 694 MPNHVTFVGVLSACSHVGL---VNEGLRYFESMSTEYGLVPK--PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPDA 765 (968)
Q Consensus 694 ~Pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~i~p~--~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~~ 765 (968)
.|+..|-.....++.++.. +.+|+.+++...+. .|. .+..--+.-.+.|.|++++|.++++.+ .++|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence 5666565556666666654 56788888887654 342 444445666788899999999988887 677763
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=79.37 E-value=12 Score=33.45 Aligned_cols=97 Identities=8% Similarity=0.176 Sum_probs=59.2
Q ss_pred CCCCceeHHHHHHHHHhcCCh------hHHHHHHHHHHhcCCCCChhh----HHHHHH---HhhcccchhhhhhhhHhhh
Q 040643 456 PEDDVVSWTAMIVGFVQHGMF------GEALELFEEMENQGIQSDNIG----FSSAIS---ACAGIQALNQGRQIHAQSY 522 (968)
Q Consensus 456 ~~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~pd~~t----~~~ll~---a~~~~~~~~~a~~i~~~~~ 522 (968)
.+.|..+|-..+...-+.|++ ++..++|++.... ++|+... |..+.- .+...++.+.+++++..++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456888999999999999999 8888888887764 6665421 111111 1123367777888887776
Q ss_pred hhcCCCCchhhhhHHHHHHHcCCHHHHHHHHH
Q 040643 523 ISGFSDDLSIGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 523 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
+..-.. ..++......-.+.|++..|++++.
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg 118 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQ 118 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 652221 3444444444445566666655554
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.99 E-value=7 Score=42.01 Aligned_cols=69 Identities=16% Similarity=0.202 Sum_probs=52.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHcccCcHHHHHHHHHHhh----hhcCCCCCcch
Q 040643 665 WNAMITGFSQHGYALEAINLFEKMKKHDVMP-NHVTFVGVLSACSHVGLVNEGLRYFESMS----TEYGLVPKPEH 735 (968)
Q Consensus 665 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~i~p~~~~ 735 (968)
...++..+...|++.+|+..++.+.. ..| +...+..++.++...|+..+|++.|+... ++.|++|..+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34566777788888888888888877 566 56678888888888888888888887754 35688888654
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.72 E-value=79 Score=34.36 Aligned_cols=96 Identities=8% Similarity=0.047 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCh---HHHHHHHHHHcccCcHHHHHHHHHHhhhh-cCCCCC----c
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKH--DVMPNH---VTFVGVLSACSHVGLVNEGLRYFESMSTE-YGLVPK----P 733 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~Pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~i~p~----~ 733 (968)
....|...|...|++.+|.+++.++... |..+.. ..+.-.+..|...+++.+|..+++++... ....+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 3456778888999999999999988753 322221 24556667899999999999999887432 222222 4
Q ss_pred chHHHHHHHHhhcCChHHHHHHHHhC
Q 040643 734 EHYACVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 734 ~~y~~lv~~l~r~G~~~eA~~~~~~m 759 (968)
..|.|++.++...+++.+|...+.+.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56889999999999999998776654
No 244
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=76.91 E-value=36 Score=29.40 Aligned_cols=89 Identities=9% Similarity=-0.012 Sum_probs=48.2
Q ss_pred HhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHH---HHHHHhcCCCCC-----HHHHHHHHHHHHhcCC
Q 040643 606 AANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDD---AKREFLEMPEKN-----EVSWNAMITGFSQHGY 677 (968)
Q Consensus 606 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~---A~~~f~~~~~~d-----~~~~~~li~~~~~~g~ 677 (968)
-.....+...++-+......|. ++..+-..+...+.+..+..+ ++.+++.+...+ ....-.|.-|+.+.|+
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence 3334445555555555544443 444444445555555555444 555555544222 1233345566777777
Q ss_pred HHHHHHHHHHHHHCCCCCCh
Q 040643 678 ALEAINLFEKMKKHDVMPNH 697 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~ 697 (968)
+++|.+.++.+++ +.|+.
T Consensus 90 Y~~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 90 YEKALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHH--hCCCC
Confidence 7777777777777 66654
No 245
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=76.03 E-value=21 Score=29.06 Aligned_cols=85 Identities=13% Similarity=0.156 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040643 612 IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKH 691 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 691 (968)
.++|.-|-+.+...+- ...+.-.-+..+...|++++|..+.+....||.+.|-++-. .+.|..+++..-+.++..+
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555554432 22222222344667899999999999999999999987755 4678888888887777776
Q ss_pred CCCCChHHHH
Q 040643 692 DVMPNHVTFV 701 (968)
Q Consensus 692 g~~Pd~~t~~ 701 (968)
| .|....|.
T Consensus 99 g-~p~~q~Fa 107 (116)
T 2p58_C 99 Q-DPRIQTFV 107 (116)
T ss_dssp C-CHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55444454
No 246
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=75.06 E-value=20 Score=29.17 Aligned_cols=85 Identities=14% Similarity=0.096 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 040643 612 IKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKH 691 (968)
Q Consensus 612 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 691 (968)
.++|.-|-+.+...+- ...+.-.-+..+...|++++|..+.+....||.+.|-++-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 4555555555554432 22222222344667899999999999999999999977755 5778888888888788777
Q ss_pred CCCCChHHHH
Q 040643 692 DVMPNHVTFV 701 (968)
Q Consensus 692 g~~Pd~~t~~ 701 (968)
| .|....|.
T Consensus 98 g-~p~~q~Fa 106 (115)
T 2uwj_G 98 S-DPALADFA 106 (115)
T ss_dssp S-SHHHHHHH
T ss_pred C-CHHHHHHH
Confidence 6 55444554
No 247
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=74.83 E-value=20 Score=32.03 Aligned_cols=63 Identities=11% Similarity=-0.035 Sum_probs=40.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhH
Q 040643 473 HGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNAL 536 (968)
Q Consensus 473 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 536 (968)
.+++++|.++|+.+++..-+- ...+...-.--.+.|++..|+++++..+..+..|...+-.++
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 377888888888887652222 233333333345678889999999988888777654443333
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=74.09 E-value=15 Score=30.04 Aligned_cols=63 Identities=21% Similarity=0.299 Sum_probs=50.0
Q ss_pred CHHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 677 YALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 677 ~~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
+.-+..+-++.+....+.|++....+.|.||.+..++.-|.++|+..+.+- .+..+.|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 455666777777777899999999999999999999999999999886653 333556777764
No 249
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=74.09 E-value=85 Score=32.36 Aligned_cols=134 Identities=17% Similarity=0.206 Sum_probs=84.9
Q ss_pred HHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHH----HHhhccccCCCcccHHHHHHHHhc
Q 040643 252 CNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELF----EKMQLDCLKPDCVTVASLVSACAS 327 (968)
Q Consensus 252 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~a~~~ 327 (968)
+.++..-|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+..
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~ 106 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL 106 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence 45566778889999999987543 233456677776665554 444567888888887777777765
Q ss_pred cCCh-----HHHHHHHHHHHHhC--CCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 040643 328 VGAF-----RTGEQLHSYAIKVG--ISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLND 396 (968)
Q Consensus 328 ~~~~-----~~a~~~~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 396 (968)
...- .-..+....-.+.| ..-|+.....+...|.+.+++.+|+.-|-.-.++.+..+..|+.-+.+.+.
T Consensus 107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 5431 12233333444445 334677778888889999999999888853333333556555554444433
No 250
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=73.73 E-value=1.6e+02 Score=35.27 Aligned_cols=248 Identities=12% Similarity=0.121 Sum_probs=125.7
Q ss_pred CChHHHHHHHhhCCCC----C--ceeHHHHHHHHHhcCChhHHHHHHHHHHhcCC--CCC---h-hhHHHHH---HHhhc
Q 040643 443 GNLNTAQEILRRLPED----D--VVSWTAMIVGFVQHGMFGEALELFEEMENQGI--QSD---N-IGFSSAI---SACAG 507 (968)
Q Consensus 443 ~~~~~a~~~~~~~~~~----~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd---~-~t~~~ll---~a~~~ 507 (968)
|+.+++...++..... + +..-..+.-|....|...+++.++.......- .-+ . ......+ -++..
T Consensus 388 g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~G 467 (963)
T 4ady_A 388 GNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMG 467 (963)
T ss_dssp SCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred CchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcC
Confidence 5556666666665541 1 12223344566777777788888877665321 011 1 1111111 12222
Q ss_pred ccchhhhhhhhHhhhhhcCC-CCchhhhhHHHHHHHcCCHHHHHHHHHhCCC--CC-cccHHHHHHHHHhcCChhhHHHH
Q 040643 508 IQALNQGRQIHAQSYISGFS-DDLSIGNALISLYARCGRIQEAYLVFNKIDA--KD-NISWNGLISGFAQSGYCEGALQV 583 (968)
Q Consensus 508 ~~~~~~a~~i~~~~~~~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~--~d-~~~~~~li~~~~~~g~~~~A~~l 583 (968)
.++- .+.+.+..++...-. ......-+|...|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.+-.+
T Consensus 468 S~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~l 546 (963)
T 4ady_A 468 SANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDL 546 (963)
T ss_dssp CCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHH
T ss_pred CCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHH
Confidence 2332 222333332221100 0001112333445556777766666665432 22 22233344455677888888888
Q ss_pred HHHhhhcCCcCCcchHH---HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHH--hcCCHHHHHHHHhcCC
Q 040643 584 FSQMTQVGVQANLYTFG---SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYA--KCGSIDDAKREFLEMP 658 (968)
Q Consensus 584 ~~~m~~~g~~p~~~t~~---~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~--k~g~~~~A~~~f~~~~ 658 (968)
.+.+... ..|. .-|. ++.-+|+..|+.....+++..+.+. ++..+-.+.+-+.+ -.|+.+.+.++++.+.
T Consensus 547 i~~L~~~-~dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 547 ITKMLAS-DESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHC-SCHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHhC-CCHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 8887653 1222 2232 2233667788888777788877763 22223333333333 3677777788887554
Q ss_pred -CCCH--HHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChHH
Q 040643 659 -EKNE--VSWNAMITGFSQHGYA-LEAINLFEKMKKHDVMPNHVT 699 (968)
Q Consensus 659 -~~d~--~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~Pd~~t 699 (968)
..|. ..--++.-|....|.+ .+|+.++..+.. .+|..+
T Consensus 622 ~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 622 KSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred hcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 2343 3333344444445544 678888888875 556443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=73.57 E-value=11 Score=34.26 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=18.6
Q ss_pred HHHHHHhhcCChHHHHHHHHhCCCCC
Q 040643 738 CVVDLLGRAGCLSRAREFTEQMPIEP 763 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m~~~p 763 (968)
-+..+|...|+.++|+..++..|.+-
T Consensus 127 kia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 127 KLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 35566777788888888888776543
No 252
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.42 E-value=40 Score=29.33 Aligned_cols=37 Identities=16% Similarity=0.157 Sum_probs=28.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHH
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLL 805 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 805 (968)
--|.-++.+.|+++.|.+..+.+++.+|+|..+..+.
T Consensus 82 YyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 82 YYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 3455567888889999999999999999887554443
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=72.85 E-value=65 Score=31.89 Aligned_cols=85 Identities=11% Similarity=0.009 Sum_probs=43.7
Q ss_pred ccCChHHHHHHHHHHHHhCCCCChh--hHhHHHHHHHhcCChhHHHHHHhh-CCC---CCcchHHHHHHHHHhcCCHHHH
Q 040643 327 SVGAFRTGEQLHSYAIKVGISKDII--VEGSMLDLYVKCSDVETAYKFFLT-TET---ENVVLWNVMLVAYGQLNDLSES 400 (968)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~-~~~---~~~~~~~~li~~~~~~g~~~~A 400 (968)
..+.......+...+++.|..++.. ...+.+...++.|+.+-+..+++. -.. +|..-++. +...++.|+.
T Consensus 191 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~-l~~A~~~~~~--- 266 (285)
T 1wdy_A 191 LSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTA-LLLAVELKLK--- 266 (285)
T ss_dssp HCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCH-HHHHHHTTCH---
T ss_pred HccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcH-HHHHHHcCcH---
Confidence 3444444456666677777655432 233445566677777777777763 222 22222222 2333444554
Q ss_pred HHHHHHHHhcCCCCCc
Q 040643 401 FQIFKQMQTEGLTPNQ 416 (968)
Q Consensus 401 ~~l~~~m~~~g~~p~~ 416 (968)
++.+.+.+.|..|+.
T Consensus 267 -~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 267 -KIAELLCKRGASTDC 281 (285)
T ss_dssp -HHHHHHHHHSSCSCC
T ss_pred -HHHHHHHHcCCCCCc
Confidence 344455556666654
No 254
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=72.76 E-value=20 Score=31.16 Aligned_cols=69 Identities=12% Similarity=0.233 Sum_probs=52.2
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCC
Q 040643 751 RAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGV 830 (968)
Q Consensus 751 eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~ 830 (968)
.++.-+-.+.+.|++.+..+-|.+||.-+|+..|.+..|-+-..-.+....|-.+. .+++-.+.+-|+
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l------------qElkPtl~ELGI 141 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGI 141 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH------------HHHhhHHHHhCC
Confidence 34444445678999999999999999999999999999988776544455555442 467777777776
Q ss_pred c
Q 040643 831 K 831 (968)
Q Consensus 831 ~ 831 (968)
.
T Consensus 142 ~ 142 (152)
T 2y69_E 142 S 142 (152)
T ss_dssp C
T ss_pred C
Confidence 4
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=71.65 E-value=14 Score=30.01 Aligned_cols=77 Identities=16% Similarity=0.047 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 040643 230 FEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD 309 (968)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 309 (968)
-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+...-||.++|-+|-.. +.|..+++..-+.++...
T Consensus 23 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 23 HEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHHhC
Confidence 3445555555444432 222222334567788999999999999999999999988764 667777777777777665
Q ss_pred c
Q 040643 310 C 310 (968)
Q Consensus 310 g 310 (968)
|
T Consensus 99 g 99 (116)
T 2p58_C 99 Q 99 (116)
T ss_dssp C
T ss_pred C
Confidence 5
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=71.01 E-value=15 Score=31.97 Aligned_cols=66 Identities=5% Similarity=-0.035 Sum_probs=47.7
Q ss_pred CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHccCCC-CcchHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 762 EPDAMVWRTLLSACRV---HKNMEIGEYAANHLLELEPE-DSATYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 762 ~p~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.|+..+--.+..+... ..+...|..+.+.+++-+|. .-..+..|+-.|++.|++++|.+.-+.+-+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3444443344444333 33566899999999998884 467788999999999999999998776644
No 257
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.88 E-value=97 Score=31.64 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=51.0
Q ss_pred HHHHHhcCCCCChhhHHHHHHHhhcccch-----hhhhhhhHhhhhhc--CCCCchhhhhHHHHHHHcCCHHHHHHHHHh
Q 040643 483 FEEMENQGIQSDNIGFSSAISACAGIQAL-----NQGRQIHAQSYISG--FSDDLSIGNALISLYARCGRIQEAYLVFNK 555 (968)
Q Consensus 483 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~-----~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 555 (968)
.+...+.++++|......++..+.....- +-......+..+.| ...++.....+...|.+.|++.+|+.-|-.
T Consensus 80 vev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 80 LEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 34444456666666655555554432211 12222333333332 224677788899999999999999998763
Q ss_pred CCCCCcccHHHHHHHHHhc
Q 040643 556 IDAKDNISWNGLISGFAQS 574 (968)
Q Consensus 556 m~~~d~~~~~~li~~~~~~ 574 (968)
-...|...+..|+.-+.+.
T Consensus 160 ~~~~s~~~~a~~l~~w~~~ 178 (312)
T 2wpv_A 160 GTHDSMIKYVDLLWDWLCQ 178 (312)
T ss_dssp SCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHh
Confidence 3322445555555444443
No 258
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.82 E-value=85 Score=34.12 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhc
Q 040643 464 TAMIVGFVQHGMFGEALELFEEMENQ 489 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m~~~ 489 (968)
..|...|...|++.+|.+++.++...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~E 166 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVE 166 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 45778888999999999999998754
No 259
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=70.77 E-value=19 Score=36.62 Aligned_cols=50 Identities=20% Similarity=0.215 Sum_probs=39.9
Q ss_pred ChHHHHHH---HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 748 CLSRAREF---TEQMPIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 748 ~~~eA~~~---~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+.....++ +...+++|. ..++++-++.+.+++|+.-|...+++++++.|.
T Consensus 185 ~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 185 NTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp CHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 33444444 444478886 778888899999999999999999999999994
No 260
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=70.72 E-value=13 Score=30.12 Aligned_cols=77 Identities=8% Similarity=-0.054 Sum_probs=53.7
Q ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhcc
Q 040643 230 FEIGEQFHGLIFKWGFSSETFVCNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLD 309 (968)
Q Consensus 230 ~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 309 (968)
-++|..+-+.+...|- ...+--.-+..+...|++++|..+.+...-||.++|-+|-. .+.|..+++..-+.++..+
T Consensus 22 HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 22 HEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 3445555555444432 22222233456778899999999999999999999998865 4778888888777777766
Q ss_pred c
Q 040643 310 C 310 (968)
Q Consensus 310 g 310 (968)
|
T Consensus 98 g 98 (115)
T 2uwj_G 98 S 98 (115)
T ss_dssp S
T ss_pred C
Confidence 5
No 261
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.95 E-value=23 Score=44.20 Aligned_cols=193 Identities=12% Similarity=0.050 Sum_probs=102.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC---------CH---------
Q 040643 601 SVVSAAANLANIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK---------NE--------- 662 (968)
Q Consensus 601 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---------d~--------- 662 (968)
.++..|...+..+.++++... .+.+....-.+..+|..+|++++|.+.|.+.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 444555555655555554322 2334443344556677888888888888776410 00
Q ss_pred --------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---H--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCC
Q 040643 663 --------VSWNAMITGFSQHGYALEAINLFEKMKKHDVMPNH---V--TFVGVLSACSHVGLVNEGLRYFESMSTEYGL 729 (968)
Q Consensus 663 --------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~---~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i 729 (968)
.-|.-++..+.++|.++.++++-...++.. .++. . .|..+..++.+.|++++|...+.++...
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--- 967 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--- 967 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---
Confidence 123445566666677777776666655431 1221 1 2555666677777777777666665321
Q ss_pred CCCcchHHHHHHHHhhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHcc-CCCC-cchHHHHHH
Q 040643 730 VPKPEHYACVVDLLGRAGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLEL-EPED-SATYVLLSN 807 (968)
Q Consensus 730 ~p~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l-~p~~-~~~~~~l~~ 807 (968)
.-......-+|..++..|.+++=. ..|+.......... ...++-.. +|.+ +.+|-.|=-
T Consensus 968 ~~r~~cLr~LV~~lce~~~~~~L~----~lpf~gl~~~Vd~I---------------L~~kAr~~~~~~~~p~Yy~iLYs 1028 (1139)
T 4fhn_B 968 PLKKSCLLDFVNQLTKQGKINQLL----NYSMPTLRQDVDNL---------------LERKAFQMINVESQPCWYNILFS 1028 (1139)
T ss_dssp SSCHHHHHHHHHHHHHHCCHHHHH----HHTTTSCHHHHHHH---------------HHHHHHHHHHHCCSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhhhh----CCCCccHHHHHHHH---------------HHHHHHhCCccccCCCHHHHhHh
Confidence 223444555666666666654422 23332221111111 11112111 2333 345666777
Q ss_pred HHhhcCCcchHHHH
Q 040643 808 IYAAAGKWDCRDQI 821 (968)
Q Consensus 808 ~y~~~g~~~~a~~~ 821 (968)
-+...|++..|+.+
T Consensus 1029 ~ri~r~dyR~AA~v 1042 (1139)
T 4fhn_B 1029 WRYKHQNYRDAAAI 1042 (1139)
T ss_dssp HHHHHHTTSCHHHH
T ss_pred hhhccCChHHHHHH
Confidence 78888999998874
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.21 E-value=23 Score=35.19 Aligned_cols=120 Identities=15% Similarity=0.086 Sum_probs=65.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCc----chHHHHHHHHhh
Q 040643 671 GFSQHGYALEAINLFEKMKKHDVMPN-HVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKP----EHYACVVDLLGR 745 (968)
Q Consensus 671 ~~~~~g~~~~A~~l~~~m~~~g~~Pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~----~~y~~lv~~l~r 745 (968)
...+.|..++|++....-++ -.|. ...-..+..-++-.|+++.|.+-++...+- .|+. ..|..+|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~---- 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVK---- 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHH----
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHH----
Confidence 34556777777777766666 3553 334555566667777777777766665432 4442 22222222
Q ss_pred cCChHHHHHHHHh--CCCCC-CHHHHHH-HHHH--HHhcCChhHHHHHHHHHHccCCCCcch
Q 040643 746 AGCLSRAREFTEQ--MPIEP-DAMVWRT-LLSA--CRVHKNMEIGEYAANHLLELEPEDSAT 801 (968)
Q Consensus 746 ~G~~~eA~~~~~~--m~~~p-~~~~~~~-ll~~--~~~~g~~~~a~~~~~~~~~l~p~~~~~ 801 (968)
+-...+ +++.. .|.-+ ++.-|.. |+.+ +...|+.+.|....+.+++.-|..++.
T Consensus 77 aE~~R~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~ 136 (273)
T 1zbp_A 77 AAQARK--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 136 (273)
T ss_dssp HHHHHH--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHHH--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCC
Confidence 111111 22222 12111 1222544 4444 345788899999999998888877763
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=69.15 E-value=67 Score=34.15 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=12.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 040643 668 MITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 668 li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
++.-|...|++.+|++++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44455555555555555555544
No 264
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=68.30 E-value=1.1e+02 Score=31.24 Aligned_cols=167 Identities=10% Similarity=0.060 Sum_probs=97.8
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHH----HHHhhhcCCcCCcchHHHHHHHHhhh
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQV----FSQMTQVGVQANLYTFGSVVSAAANL 609 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~a~~~~ 609 (968)
.++..-|.+.+++++|.+++..- ...+.++|+...|-++ .+-..+.+++++..+..-++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 45777788888888888875431 2334556665555443 34444457777776666666655442
Q ss_pred h-----hHHHHHHHHHHHHHhCC--CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhc---CCHH
Q 040643 610 A-----NIKQGKQVHAMIIKTGY--DSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQH---GYAL 679 (968)
Q Consensus 610 ~-----~~~~a~~~~~~~~~~g~--~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~---g~~~ 679 (968)
. ...-.........+.|- .-|+.....+...|.+.|++.+|+.-|-.-...|...+-.|+.-+... |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 2 12222233333333332 236778888999999999999999887643333555665555555444 4444
Q ss_pred HHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhh
Q 040643 680 EAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTE 726 (968)
Q Consensus 680 ~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 726 (968)
++--..-+ ++|. +.-.|++..|...|+...+.
T Consensus 186 e~dlf~~R--------------aVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVAEFFSR--------------LVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHH--------------HHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--------------HHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33222111 2222 33567888888888876544
No 265
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=67.66 E-value=2.1e+02 Score=34.23 Aligned_cols=114 Identities=11% Similarity=-0.014 Sum_probs=48.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHH--HHHhhcCChHH
Q 040643 675 HGYALEAINLFEKMKKHDVMPNHV-TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVV--DLLGRAGCLSR 751 (968)
Q Consensus 675 ~g~~~~A~~l~~~m~~~g~~Pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv--~~l~r~G~~~e 751 (968)
.|+.+-...++..+.+. ..+.+ -+..+.-++...|+.+.+..+.+.+... -.|-...-++++ -+|+-.|+...
T Consensus 503 Tgn~~ai~~LL~~~~e~--~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 503 TGKPEAIHDMFTYSQET--QHGNITRGLAVGLALINYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp CCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred cCCHHHHHHHHHHHhcc--CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34555555555555442 22222 2333333444566666666666655432 122222222222 23445556554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHH
Q 040643 752 AREFTEQMPIEPDAMVWRTLLSA--CRVHKNMEIGEYAANHLL 792 (968)
Q Consensus 752 A~~~~~~m~~~p~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~ 792 (968)
..+++..+.-.++..+-+...-+ ....|+.+...++.+.+.
T Consensus 579 Iq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~ 621 (963)
T 4ady_A 579 VKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTVPRIVQLLS 621 (963)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGG
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 44465555333332222222222 223455544444444333
No 266
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=67.20 E-value=1.8 Score=28.12 Aligned_cols=13 Identities=38% Similarity=0.968 Sum_probs=10.1
Q ss_pred ccc-CCCcCCCCCC
Q 040643 955 HHF-EGGVCSCRDY 967 (968)
Q Consensus 955 h~f-~~g~csc~d~ 967 (968)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 5899999977
No 267
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=65.03 E-value=1.5e+02 Score=31.70 Aligned_cols=149 Identities=12% Similarity=0.097 Sum_probs=72.6
Q ss_pred HHHHhhccCChhHHHHHHhhCCCC---CcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCccc--HHHHHHHHhccC
Q 040643 255 LVTLYSRSGNLTSAEQIFSKMQQR---DGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVT--VASLVSACASVG 329 (968)
Q Consensus 255 Li~~y~~~g~~~~A~~~f~~m~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~a~~~~~ 329 (968)
.+...++.|+.+-+..+++.-... +...++.|.. .++.|+.+- ++.+.+.|..++... -.+.+...+..|
T Consensus 215 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~-A~~~g~~~~----v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 289 (437)
T 1n11_A 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL-AAQEGHAEM----VALLLSKQANGNLGNKSGLTPLHLVAQEG 289 (437)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH-HHHTTCHHH----HHHHHTTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHH-HHHCCCHHH----HHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence 344555667777777776643322 2223333333 344555433 333334444433221 112333334455
Q ss_pred ChHHHHHHHHHHHHhCCCCChh--hHhHHHHHHHhcCChhHHHHHHhhCCCCCc---chHHHHHHHHHhcCCHHHHHHHH
Q 040643 330 AFRTGEQLHSYAIKVGISKDII--VEGSMLDLYVKCSDVETAYKFFLTTETENV---VLWNVMLVAYGQLNDLSESFQIF 404 (968)
Q Consensus 330 ~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~ 404 (968)
..+ +.+.+++.|...+.. ...+.+...+..|+.+-+.-+++.-...|. .-++.+. ..++.|+.+ +.
T Consensus 290 ~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~-~A~~~g~~~----iv 360 (437)
T 1n11_A 290 HVP----VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLH-QAAQQGHTD----IV 360 (437)
T ss_dssp CHH----HHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHH-HHHHTTCHH----HH
T ss_pred CHH----HHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHH-HHHHCChHH----HH
Confidence 554 344445566554432 223445556677888877777765443332 2233333 334556543 44
Q ss_pred HHHHhcCCCCCcc
Q 040643 405 KQMQTEGLTPNQY 417 (968)
Q Consensus 405 ~~m~~~g~~p~~~ 417 (968)
+.+.+.|..|+..
T Consensus 361 ~~Ll~~ga~~~~~ 373 (437)
T 1n11_A 361 TLLLKNGASPNEV 373 (437)
T ss_dssp HHHHHTTCCSCCC
T ss_pred HHHHHCcCCCCCC
Confidence 5556677777653
No 268
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=64.49 E-value=76 Score=30.48 Aligned_cols=57 Identities=12% Similarity=0.013 Sum_probs=26.8
Q ss_pred HHHHHHHhcCChhHHHHHHhhCCCCCc---chHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 040643 355 SMLDLYVKCSDVETAYKFFLTTETENV---VLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPNQ 416 (968)
Q Consensus 355 ~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 416 (968)
+.+...++.|+.+-+..+++.-...+. .-+ +.+...++.|+.+ +++.+.+.|..|+.
T Consensus 152 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGS-SALHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSC-BHHHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 344444556666665555554333221 112 2233334555544 44445556666554
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=63.60 E-value=80 Score=39.34 Aligned_cols=62 Identities=11% Similarity=-0.067 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcc-----hHHHHHHHHhhcCCcchHHHHHHHHHh
Q 040643 766 MVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSA-----TYVLLSNIYAAAGKWDCRDQIRQIMKD 827 (968)
Q Consensus 766 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~-----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 827 (968)
.-|..++.-+..+|-++.+.+.++.+++..+.+.. .|..+-+.+.+.|+|++|-...-.+.+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 33444555555555566666555555554433222 233333445555666666554444433
No 270
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=63.44 E-value=93 Score=35.62 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=20.8
Q ss_pred HHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHh
Q 040643 285 SLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACA 326 (968)
Q Consensus 285 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~ 326 (968)
++|-.+.+.|..++|.++.++.... +.--...|...+..++
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~-~~~~d~~F~~~l~~~~ 197 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKAN-IKKVEQSFLTYFKAYA 197 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGG-C-----CHHHHHHHC-
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhh-HhhhhHHHHHHHHHHH
Confidence 5566667777777777776555321 1111134555555554
No 271
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=61.00 E-value=35 Score=29.65 Aligned_cols=62 Identities=21% Similarity=0.319 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHH
Q 040643 678 ALEAINLFEKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVD 741 (968)
Q Consensus 678 ~~~A~~l~~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~ 741 (968)
.-+..+-++.+....+.|++....+.|.||.+.+++.-|.++|+..+.+- .+..+.|..+++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq 130 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence 33556666677777899999999999999999999999999999886553 444666777764
No 272
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=59.71 E-value=15 Score=39.45 Aligned_cols=64 Identities=13% Similarity=-0.013 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHHH-----hCCCcc
Q 040643 769 RTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMK-----DRGVKK 832 (968)
Q Consensus 769 ~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~-----~~g~~k 832 (968)
..++.++...|+.+.+...++.++..+|-+-..|..|..+|...|+..+|.++++..+ +-|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P 243 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 243 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456667778888888888999999999999999999999999999999987655443 346643
No 273
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=59.38 E-value=37 Score=33.70 Aligned_cols=111 Identities=15% Similarity=0.189 Sum_probs=78.0
Q ss_pred HHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc
Q 040643 705 SACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQM-PIEPD----AMVWRTLLSACRVH 778 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p~----~~~~~~ll~~~~~~ 778 (968)
....+.|.+++++.....-.+. .|. ..+-..++.+|+=.|+++.|.+-++.. .+.|+ +..|+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~---~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKA---SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHT---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH------
Confidence 4566889999999998877654 454 888889999999999999999877766 45565 33455555
Q ss_pred CChhHHHHHHHHHHccC-----CCCcchH---HHHHHHHhhcCCcchHHHHHHHHHhC
Q 040643 779 KNMEIGEYAANHLLELE-----PEDSATY---VLLSNIYAAAGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 779 g~~~~a~~~~~~~~~l~-----p~~~~~~---~~l~~~y~~~g~~~~a~~~~~~m~~~ 828 (968)
.|+..-+.++.-. +..+..+ .+-++.....|+.++|.++|...-+.
T Consensus 76 ----~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 ----KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp ----HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 3444445555421 2233333 34456667789999999999998664
No 274
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=58.12 E-value=2e+02 Score=32.94 Aligned_cols=80 Identities=9% Similarity=0.108 Sum_probs=41.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHH---
Q 040643 466 MIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYAR--- 542 (968)
Q Consensus 466 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--- 542 (968)
....+.-.|+++.|++++-.. ...|.+.+...+.-+.-++- ..++...- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 455666789999999988754 35566777776666544432 11111110 00 11 1123456666654
Q ss_pred cCCHHHHHHHHHhC
Q 040643 543 CGRIQEAYLVFNKI 556 (968)
Q Consensus 543 ~g~~~~A~~~f~~m 556 (968)
..+..+|...|--+
T Consensus 369 ~td~~~Al~Y~~li 382 (661)
T 2qx5_A 369 YSDPRVAVEYLVLI 382 (661)
T ss_dssp TTCHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHH
Confidence 46677777766555
No 275
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=52.80 E-value=93 Score=28.25 Aligned_cols=52 Identities=8% Similarity=-0.021 Sum_probs=29.3
Q ss_pred HHHHHHcCCHHHHHHHHHhCC-----CCCcc-------cHHHHHHHHHhcCChhhHHHHHHHhh
Q 040643 537 ISLYARCGRIQEAYLVFNKID-----AKDNI-------SWNGLISGFAQSGYCEGALQVFSQMT 588 (968)
Q Consensus 537 i~~y~k~g~~~~A~~~f~~m~-----~~d~~-------~~~~li~~~~~~g~~~~A~~l~~~m~ 588 (968)
+......|.++.|+-+.+-+. ++++. +...+..++...|++..|...|++..
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 455566677777765554322 12221 23445566666777777777776643
No 276
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=50.63 E-value=4.9 Score=35.24 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=32.5
Q ss_pred CCCEEEe----cccccCChhhHHHHHHHHhhcceEEEecCCcccccCCCcCC
Q 040643 916 SMPILVI----KNLRVCNDCHNWIKFVSKISNRTIVVRDANRFHHFEGGVCS 963 (968)
Q Consensus 916 ~~~~~~~----kn~r~c~dch~~~k~~s~~~~r~i~~rd~~~~h~f~~g~cs 963 (968)
+-.+||+ ++.+||-+| .|+..-..-+++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4568887 688999998 566666677899999999999873
No 277
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=50.27 E-value=28 Score=35.51 Aligned_cols=42 Identities=31% Similarity=0.350 Sum_probs=35.8
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHccCCC
Q 040643 756 TEQMPIEPD--AMVWRTLLSACRVHKNMEIGEYAANHLLELEPE 797 (968)
Q Consensus 756 ~~~m~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~ 797 (968)
+...+++|. ..++++-++.+.+++|+.-|...+++++++.|.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 344477876 778888889999999999999999999999874
No 278
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=49.51 E-value=3.3e+02 Score=30.82 Aligned_cols=351 Identities=9% Similarity=0.037 Sum_probs=165.0
Q ss_pred HHHHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCCh
Q 040643 252 CNALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAF 331 (968)
Q Consensus 252 ~~~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~ 331 (968)
-+.-+..+.+.+++......|.. +..+...--....+....|+..+|......+=..| ...+.....++..+...|.+
T Consensus 75 r~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 75 QSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 34445667777888888887766 32233333445666777888877877777765544 22333444555544433322
Q ss_pred HHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 040643 332 RTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQTEG 411 (968)
Q Consensus 332 ~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 411 (968)
.+..++ .-++.....|+...|..+...++.........++..+..-... ......
T Consensus 153 ----------------t~~~~~-~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~----- 207 (618)
T 1qsa_A 153 ----------------DPLAYL-ERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFART----- 207 (618)
T ss_dssp ----------------CHHHHH-HHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHH-----
T ss_pred ----------------CHHHHH-HHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhc-----
Confidence 221122 2234555667777777777766422211222222222211111 111000
Q ss_pred CCCCccchhhhhhhhccCCchhhhHHHHHhhCChHHHHHHHhhCCCCCceeHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 040643 412 LTPNQYTYPTILRTCTSLGALSLGEQIHTQLGNLNTAQEILRRLPEDDVVSWTAMIVGFVQHGMFGEALELFEEMENQGI 491 (968)
Q Consensus 412 ~~p~~~t~~~ll~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 491 (968)
+.|+...-. ....-+.-+.+ .+++.|..+|....+..
T Consensus 208 ~~~~~~~~~-----------------------------------------~~~~~~~rlar-~d~~~A~~~~~~~~~~~- 244 (618)
T 1qsa_A 208 TGATDFTRQ-----------------------------------------MAAVAFASVAR-QDAENARLMIPSLAQAQ- 244 (618)
T ss_dssp SCCCHHHHH-----------------------------------------HHHHHHHHHHH-HCHHHHHHHHHHHHHHT-
T ss_pred cCCChhhHH-----------------------------------------HHHHHHHHHHh-cCHHHHHHHHHhhhhcc-
Confidence 000000000 00011122222 25677777777665433
Q ss_pred CCChhhHH----HHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHcCCHHHHHHHHHhCCCCCc--ccH-
Q 040643 492 QSDNIGFS----SAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARCGRIQEAYLVFNKIDAKDN--ISW- 564 (968)
Q Consensus 492 ~pd~~t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~~d~--~~~- 564 (968)
..+..... .+.......+....+...+....... .+..+..-.+..-.+.|+++.|...|+.|+.... .-|
T Consensus 245 ~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~ 322 (618)
T 1qsa_A 245 QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWR 322 (618)
T ss_dssp TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHH
Confidence 12222211 12222223331222333333222221 2222222333444567999999999999986432 111
Q ss_pred HHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhhHHHHHHHHHHHHHhCCCCC-hh--H---HhHHh
Q 040643 565 NGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLANIKQGKQVHAMIIKTGYDSE-TE--A---SNSLI 638 (968)
Q Consensus 565 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~--~---~~~li 638 (968)
-=+..++.+.|+.++|..+|.++... .+|-.++.+ .++|..... . . ....+. .. . .-..+
T Consensus 323 YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa-~~Lg~~~~~-~----~--~~~~~~~~~~~~~~~~~~r~ 388 (618)
T 1qsa_A 323 YWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAA-QRIGEEYEL-K----I--DKAPQNVDSALTQGPEMARV 388 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHH-HHTTCCCCC-C----C--CCCCSCCCCHHHHSHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHH-HHcCCCCCC-C----C--CCCChhHHhhhccChHHHHH
Confidence 22344667789999999999988642 245444422 222210000 0 0 000000 00 0 11224
Q ss_pred hHHHhcCCHHHHHHHHhcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 040643 639 TLYAKCGSIDDAKREFLEMP-EKNEVSWNAMITGFSQHGYALEAINLFEKM 688 (968)
Q Consensus 639 ~~y~k~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 688 (968)
..+...|....|...+..+. ..+......+.......|..+.++....+.
T Consensus 389 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~ 439 (618)
T 1qsa_A 389 RELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAG 439 (618)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 45667888888887766544 234333334444445677787777665543
No 279
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=48.44 E-value=1.9e+02 Score=27.54 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=14.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC
Q 040643 468 VGFVQHGMFGEALELFEEMENQGIQSD 494 (968)
Q Consensus 468 ~~~~~~g~~~~A~~l~~~m~~~g~~pd 494 (968)
...++.|+.+.+..+++.+.+.|..++
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 334455666666666665555554443
No 280
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=47.26 E-value=1.8e+02 Score=29.02 Aligned_cols=225 Identities=9% Similarity=-0.022 Sum_probs=0.0
Q ss_pred hHHHHHHHHhCCCCCccchhHHHHHHHhcCCchHHHHHHhhCCCCCeehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Q 040643 133 NQIHGLIISHGFGGSPLISNPLIDLYAKNGFIDSAKKVFNNLCFKDSVSWVAMISGFSQNGYEREAILLFCQMHILGTVP 212 (968)
Q Consensus 133 ~~i~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 212 (968)
+.+...+.+.+......-..+.+..-++.|+.+-+..+++.-..++...-.+.+...+..|+ .++.+.+.+.|..+
T Consensus 13 ~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~----~~~v~~Ll~~ga~~ 88 (285)
T 3kea_A 13 KQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQAATLED----TKIVKILLFSGLDD 88 (285)
T ss_dssp HHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHHTTSSS----CHHHHHHHHTTCCT
T ss_pred HHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHcCC----HHHHHHHHHCCCCC
Q ss_pred ChhhHH--HHHHhhcccCchHHHHHHHHHHHHhcCCCchhHH---HHHHHHhhccCChhHHHHHHhhCCCCCcc-cHHHH
Q 040643 213 TPYAIS--SALSACTKIELFEIGEQFHGLIFKWGFSSETFVC---NALVTLYSRSGNLTSAEQIFSKMQQRDGV-TYNSL 286 (968)
Q Consensus 213 ~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~---~~Li~~y~~~g~~~~A~~~f~~m~~~~~~-~~~~l 286 (968)
+..... +.|...+..|+.+..+.+++. |..++.... .+.+...+..|+.+-+..+++.-...... .-.+.
T Consensus 89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~ 164 (285)
T 3kea_A 89 SQFDDKGNTALYYAVDSGNMQTVKLFVKK----NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSC 164 (285)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHH----CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCCSTHHHH
T ss_pred CCcCCCCCcHHHHHHHcCCHHHHHHHHhc----CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccCCccH
Q ss_pred HHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCCh
Q 040643 287 ISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDV 366 (968)
Q Consensus 287 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 366 (968)
+...+..|+.+-+.-+++.-..-.. .|..-.+..+...+..+. .++.+.+++.|..++.....+ ...|+.
T Consensus 165 L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~~~a-----~~~~~~ 234 (285)
T 3kea_A 165 IHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSANLEN-----VLLDDA 234 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTTGGG-----GTTTCH
T ss_pred HHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCChhh-----hhcCCH
Q ss_pred hHHHHHHhh
Q 040643 367 ETAYKFFLT 375 (968)
Q Consensus 367 ~~A~~~f~~ 375 (968)
+-+.-+++.
T Consensus 235 ~iv~~Ll~~ 243 (285)
T 3kea_A 235 EIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
No 281
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=47.18 E-value=1.7e+02 Score=27.64 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=7.5
Q ss_pred hhccCChhHHHHHHhh
Q 040643 259 YSRSGNLTSAEQIFSK 274 (968)
Q Consensus 259 y~~~g~~~~A~~~f~~ 274 (968)
.++.|+.+-+..+++.
T Consensus 116 A~~~~~~~~~~~Ll~~ 131 (240)
T 3eu9_A 116 AAQFGHTSIVAYLIAK 131 (240)
T ss_dssp HHHTTCHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHhc
Confidence 3344555544444443
No 282
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=46.85 E-value=21 Score=19.94 Aligned_cols=18 Identities=33% Similarity=0.687 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHc
Q 040643 858 ADKIYDYLGNLNRRVAEI 875 (968)
Q Consensus 858 ~~~i~~~l~~l~~~~~~~ 875 (968)
++++|.+|+.|.+++++.
T Consensus 3 adelykeledlqerlrkl 20 (27)
T 3twe_A 3 ADELYKELEDLQERLRKL 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578999999998888753
No 283
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=44.43 E-value=3.1e+02 Score=29.06 Aligned_cols=330 Identities=13% Similarity=0.087 Sum_probs=170.2
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCCcc--cchhhHHhhhhCCCcchHHHhhhccCCCC---ccchHHHHHHHHhcCC
Q 040643 17 LEGCLSYGSLLEAKKIHGKILKLGFDGEQV--LCDKFFNIYLTSGDLDSAMKIFDDMSKRT---VFSWNKLISGFVAKKL 91 (968)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~ 91 (968)
|...+..|.++ +...+++.|..++.. ...+.+...+..|+.+-+..+++.-...+ ..-++.|. ..+..|+
T Consensus 18 L~~Aa~~g~~~----~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~g~ 92 (437)
T 1n11_A 18 LHVASFMGHLP----IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH-CAARIGH 92 (437)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH-HHHHHTC
T ss_pred HHHHHHCCCHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH-HHHHCCC
Confidence 33344556654 445556667766542 34566777778899998888887644332 22333443 3456676
Q ss_pred hhhHHHHHHHhHhCCCCCCcc---cHHHHHHHhhcCCCccchhhhHHHHHHHHhCCCCCc--cchhHHHHHHHhcCCchH
Q 040643 92 SGRVLGLFLQMIDDDVIPNEA---TFVGVLRACIGSGNVAVQCVNQIHGLIISHGFGGSP--LISNPLIDLYAKNGFIDS 166 (968)
Q Consensus 92 ~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~~~~~i~~~~~~~g~~~~~--~~~~~li~~y~~~g~~~~ 166 (968)
.+-+.-++ +.|..|+.. ..+.+ ...+..|... . ...++..+...+. ......+..-++.|+.+-
T Consensus 93 ~~~v~~Ll----~~ga~~~~~~~~g~t~L-~~A~~~g~~~--~----v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 161 (437)
T 1n11_A 93 TNMVKLLL----ENNANPNLATTAGHTPL-HIAAREGHVE--T----VLALLEKEASQACMTKKGFTPLHVAAKYGKVRV 161 (437)
T ss_dssp HHHHHHHH----HHTCCTTCCCTTCCCHH-HHHHHHTCHH--H----HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHHH----hCCCCCCCCCCCCCcHH-HHHHHcCCHH--H----HHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence 65443333 345544432 22223 3333444443 3 3334445543332 112334555677888888
Q ss_pred HHHHHhhCCCCCe---ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCChhhH--HHHHHhhcccCchHHHHHHHHHHH
Q 040643 167 AKKVFNNLCFKDS---VSWVAMISGFSQNGYEREAILLFCQMHILGTVPTPYAI--SSALSACTKIELFEIGEQFHGLIF 241 (968)
Q Consensus 167 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~ 241 (968)
+..+++.-..++. ..++.|. ..+..|+.+ +.+.+...|..|+.... .+.+...+..++.+.. ..++
T Consensus 162 v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----~~Ll 232 (437)
T 1n11_A 162 AELLLERDAHPNAAGKNGLTPLH-VAVHHNNLD----IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVA----RSLL 232 (437)
T ss_dssp HHHHHHTTCCTTCCCSSCCCHHH-HHHHTTCHH----HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHH----HHHH
T ss_pred HHHHHhCCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHH
Confidence 8888776543332 2233333 334556543 44555556655543211 1223334455665544 4445
Q ss_pred HhcCCCchh--HHHHHHHHhhccCChhHHHHHHhhCCCCC---cccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcc
Q 040643 242 KWGFSSETF--VCNALVTLYSRSGNLTSAEQIFSKMQQRD---GVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCV 316 (968)
Q Consensus 242 ~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~m~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 316 (968)
+.|..++.. .....+...+..|..+-...+++.-..++ ..-++.|.. .++.|+.+ +++.+.+.|..+|..
T Consensus 233 ~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~-A~~~~~~~----~~~~Ll~~g~~~~~~ 307 (437)
T 1n11_A 233 QYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHL-VAQEGHVP----VADVLIKHGVMVDAT 307 (437)
T ss_dssp HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHH-HHHHTCHH----HHHHHHHHTCCTTCC
T ss_pred HcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHH-HHHcCCHH----HHHHHHhCCccCCCC
Confidence 566544322 22334455667788888888877654432 233444443 34556554 333444456555432
Q ss_pred c--HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--hHhHHHHHHHhcCChhHHHHHHhhCCCCC
Q 040643 317 T--VASLVSACASVGAFRTGEQLHSYAIKVGISKDII--VEGSMLDLYVKCSDVETAYKFFLTTETEN 380 (968)
Q Consensus 317 t--~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~~~ 380 (968)
. -.+.+...+..|+.+.+ +.+++.|..++.. ...+-+...++.|+.+-+..+++.-..++
T Consensus 308 ~~~g~t~L~~A~~~g~~~~v----~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~ 371 (437)
T 1n11_A 308 TRMGYTPLHVASHYGNIKLV----KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPN 371 (437)
T ss_dssp CSSCCCHHHHHHHSSCSHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC
T ss_pred CCCCCCHHHHHHHcCcHHHH----HHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCC
Confidence 2 12334444556776544 4455667665432 22344556677888888877777654443
No 284
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=42.48 E-value=5.3 Score=26.22 Aligned_cols=9 Identities=44% Similarity=1.176 Sum_probs=8.2
Q ss_pred ccccCChhh
Q 040643 924 NLRVCNDCH 932 (968)
Q Consensus 924 n~r~c~dch 932 (968)
|-|||.+||
T Consensus 16 ~YRvC~~Cg 24 (44)
T 2lo3_A 16 QYRVCEKCG 24 (44)
T ss_dssp CEEECTTTC
T ss_pred cchhhcccC
Confidence 789999997
No 285
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.15 E-value=2.4e+02 Score=26.48 Aligned_cols=92 Identities=14% Similarity=0.238 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHc--cCCCCcchHHHHHHHHhhcCCcchHHHHHHHHHhCCCccCCcccEEEEc
Q 040643 765 AMVWRTLLSACRVHKNMEIGEYAANHLLE--LEPEDSATYVLLSNIYAAAGKWDCRDQIRQIMKDRGVKKEPGQSWIEVK 842 (968)
Q Consensus 765 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~g~~k~~g~s~i~~~ 842 (968)
..+|-.++..| ..++......+++.+.. +.-.-+..|...+..+...|+|.+|.+|.+.=.+++.
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A------------ 146 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC------------ 146 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------------
Confidence 44565555554 23445566777776655 4566788999999999999999999999886555543
Q ss_pred CEEEEEecCCCCCcchHHHHHHHHHHHHHHHHcCcccCCC
Q 040643 843 NSIHAFFVGDRLHPLADKIYDYLGNLNRRVAEIGYVQGRY 882 (968)
Q Consensus 843 ~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 882 (968)
.| .+.+-....+...+|.+.+.+.+..
T Consensus 147 ------------~P-~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 147 ------------RP-YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp ------------BS-HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred ------------cc-HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 23 4566677778888888888754444
No 286
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=39.11 E-value=2.8e+02 Score=26.95 Aligned_cols=46 Identities=9% Similarity=-0.007 Sum_probs=24.5
Q ss_pred cchhhhhhhhHhhhhhcCCCCch--hhhhHHHHHHHcCCHHHHHHHHH
Q 040643 509 QALNQGRQIHAQSYISGFSDDLS--IGNALISLYARCGRIQEAYLVFN 554 (968)
Q Consensus 509 ~~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~k~g~~~~A~~~f~ 554 (968)
++.....++...+.+.|..++.. ...+.+...++.|+.+-+..+++
T Consensus 193 ~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred cccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 33333455666666666655432 23344555556666666666555
No 287
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=39.07 E-value=2e+02 Score=29.67 Aligned_cols=55 Identities=15% Similarity=0.006 Sum_probs=25.0
Q ss_pred HHHHHhcCCchHHHHHHhhCCCCCe-ehHHHHHHHHHcCCCHHHHHHHHHHHHhcCC
Q 040643 155 IDLYAKNGFIDSAKKVFNNLCFKDS-VSWVAMISGFSQNGYEREAILLFCQMHILGT 210 (968)
Q Consensus 155 i~~y~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 210 (968)
+..-+..|+.+-+..+++.-...+. ..++.| ...+..|+.+-+..+++.-...|.
T Consensus 57 L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L-~~A~~~g~~~~v~~Ll~~~~~~~~ 112 (364)
T 3ljn_A 57 LHLACKFGCVDTAKYLASVGEVHSLWHGQKPI-HLAVMANKTDLVVALVEGAKERGQ 112 (364)
T ss_dssp HHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHH-HHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCHH-HHHHHcCCHHHHHHHHHhccccCC
Confidence 3344555666666666555433332 122222 233345555555555444333333
No 288
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.75 E-value=2.1e+02 Score=26.12 Aligned_cols=180 Identities=9% Similarity=0.033 Sum_probs=0.0
Q ss_pred HHHhhccCChhHHHHHHhhCC----CCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccH--HHHHHHHhccC
Q 040643 256 VTLYSRSGNLTSAEQIFSKMQ----QRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTV--ASLVSACASVG 329 (968)
Q Consensus 256 i~~y~~~g~~~~A~~~f~~m~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~--~~ll~a~~~~~ 329 (968)
+...+..|+.+....+++.-. .+|..-++.|..+..... .++++.+.+.|..|+.... .+.+...+..|
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~-----~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~ 83 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNND-----IEIAKALIDRGADINLQNSISDSPYLYAGAQG 83 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTC-----HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCC-----HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Q ss_pred ChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhC----CCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 040643 330 AFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTT----ETENVVLWNVMLVAYGQLNDLSESFQIFK 405 (968)
Q Consensus 330 ~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 405 (968)
+.+..+.++.. ....+........+.+...++.|+.+-+..+++.- ..+|..-++.+..+.........-.++.+
T Consensus 84 ~~~~~~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 84 RTEILAYMLKH-ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp CHHHHHHHHHH-SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred CHHHHHHHHhc-cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Q ss_pred HHHhcCCCCCccchh--hhhhhhccCCchhhhHHHHHh
Q 040643 406 QMQTEGLTPNQYTYP--TILRTCTSLGALSLGEQIHTQ 441 (968)
Q Consensus 406 ~m~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~~~~~ 441 (968)
.+.+.|..|+..... +.+......+..+..+.+.+.
T Consensus 163 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 163 LLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
No 289
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.10 E-value=67 Score=34.73 Aligned_cols=96 Identities=13% Similarity=-0.037 Sum_probs=67.7
Q ss_pred HHhHHhhHHHhcCCHHHHHHHHhcCCC------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChHH--HH
Q 040643 633 ASNSLITLYAKCGSIDDAKREFLEMPE------KNEVSWNAMITGFSQHGYALEAINLFEKMKK---HDVMPNHVT--FV 701 (968)
Q Consensus 633 ~~~~li~~y~k~g~~~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~Pd~~t--~~ 701 (968)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+....++... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 566788899999999999999988762 2244677788888889999999988888754 333343322 11
Q ss_pred HHHHHHcccCcHHHHHHHHHHhhhhcC
Q 040643 702 GVLSACSHVGLVNEGLRYFESMSTEYG 728 (968)
Q Consensus 702 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 728 (968)
.-.-.+.+.+++.+|-++|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 222345678899999988887766544
No 290
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.17 E-value=1.7e+02 Score=28.31 Aligned_cols=92 Identities=12% Similarity=0.020 Sum_probs=53.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCChh-------hHHHHHHHhh--cccchhhhhhhhHhhhhhc---------CCC
Q 040643 467 IVGFVQHGMFGEALELFEEMENQGIQSDNI-------GFSSAISACA--GIQALNQGRQIHAQSYISG---------FSD 528 (968)
Q Consensus 467 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-------t~~~ll~a~~--~~~~~~~a~~i~~~~~~~g---------~~~ 528 (968)
+...++.|+.+....+++.+.+.|..++.. -.+.+..|+. ..|+.+.++.++..-...+ +..
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344557788888888888877777666533 2344444442 5577766666665432211 111
Q ss_pred CchhhhhHHHHHHHcCCHHHHHHHHHhCCC
Q 040643 529 DLSIGNALISLYARCGRIQEAYLVFNKIDA 558 (968)
Q Consensus 529 ~~~~~~~Li~~y~k~g~~~~A~~~f~~m~~ 558 (968)
......+.+..-+..|+.+-+.-+++.-..
T Consensus 89 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 118 (260)
T 3jxi_A 89 VYYRGQTALHIAIERRCKHYVELLVEKGAD 118 (260)
T ss_dssp SSEESBCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 111334455666777888877777775433
No 291
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=36.16 E-value=4.3e+02 Score=28.35 Aligned_cols=101 Identities=7% Similarity=-0.048 Sum_probs=54.7
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHhhh---hcCCCCCcchHHHHHHH--HhhcCChHHHHHHHHhCC----CCCCHHHHH
Q 040643 699 TFVGVLSACSHVGLVNEGLRYFESMST---EYGLVPKPEHYACVVDL--LGRAGCLSRAREFTEQMP----IEPDAMVWR 769 (968)
Q Consensus 699 t~~~ll~a~~~~g~~~~a~~~~~~m~~---~~~i~p~~~~y~~lv~~--l~r~G~~~eA~~~~~~m~----~~p~~~~~~ 769 (968)
....|...+...|+.+.|.-.|--... .++..|+...--+++.. -..+=.+.|.+|+..... .-|....+.
T Consensus 280 ~l~~LGd~L~~~g~~~aAhiCYL~a~~p~~~~~~~~~~~~~~~llG~~~~~eai~~TEiyEya~sl~~~~~~~p~l~~yK 359 (441)
T 3mzk_B 280 FLIEFGIFLTKKGLTAAASTLFIIGNVPLSNEPVMADSDVIFESIGNMNTFESILWDEIYEYIFSYDPKFKGFSSILPQK 359 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCCCSSSBSSTTCCCBCCCSSCTTSHHHHHHHHHHHHHHHTSTTCCCCGGGHHHH
T ss_pred HHHHHHHHHHhCCCcchhHHhHhccCCCcCCCCCCCCCCceEEEeCCCCchHHHHHHHHHHHHHHhCCCccCChhHHHHH
Confidence 566677777788888888877765532 12333432211111100 001113567777766652 235555554
Q ss_pred HHHHH-HHhcCChhHHHHHHHHHH---ccCCCCc
Q 040643 770 TLLSA-CRVHKNMEIGEYAANHLL---ELEPEDS 799 (968)
Q Consensus 770 ~ll~~-~~~~g~~~~a~~~~~~~~---~l~p~~~ 799 (968)
..-.. ...+|..+.|.+..+.+. +..|..+
T Consensus 360 l~~A~~Lae~G~~~~A~~Ycdai~~~lk~~~k~s 393 (441)
T 3mzk_B 360 IYHASLLQEQGLNSLGTKYTDYLSSSVRKLPKKD 393 (441)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence 33333 468999999998877644 3445543
No 292
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=36.08 E-value=82 Score=30.80 Aligned_cols=87 Identities=10% Similarity=-0.068 Sum_probs=39.2
Q ss_pred HcCCCHHHHHHHHHHHHhcCCCCChhh-------HHHHHHhhc--ccCchHHHHHHHHHHHHhc---------CCCchhH
Q 040643 190 SQNGYEREAILLFCQMHILGTVPTPYA-------ISSALSACT--KIELFEIGEQFHGLIFKWG---------FSSETFV 251 (968)
Q Consensus 190 ~~~g~~~~A~~~~~~m~~~g~~p~~~t-------~~~ll~~~~--~~~~~~~a~~~~~~~~~~g---------~~~~~~~ 251 (968)
++.|+.+....+++.+...|..++... .+.+..++. +.|+.+..+.++..-...+ +......
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~ 92 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYR 92 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEE
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccC
Confidence 445666665556665555555444222 222333321 4566655555554433211 0000001
Q ss_pred HHHHHHHhhccCChhHHHHHHhhCC
Q 040643 252 CNALVTLYSRSGNLTSAEQIFSKMQ 276 (968)
Q Consensus 252 ~~~Li~~y~~~g~~~~A~~~f~~m~ 276 (968)
..+.+...+..|+.+-+..+++.-.
T Consensus 93 g~t~L~~A~~~g~~~~v~~Ll~~ga 117 (260)
T 3jxi_A 93 GQTALHIAIERRCKHYVELLVEKGA 117 (260)
T ss_dssp SBCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCC
Confidence 2233344455566666666666443
No 293
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=35.50 E-value=4e+02 Score=27.67 Aligned_cols=264 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCChhhHHHHHHHhhcccchhhhhhhhHhhhhhcCCCCchhhhhHHHHHHHc
Q 040643 464 TAMIVGFVQHGMFGEALELFEEMENQGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYISGFSDDLSIGNALISLYARC 543 (968)
Q Consensus 464 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 543 (968)
.++|.-|...++.++|...++++......|.......-...=.+...-+.+-.++..+.. ++-+...+...+...+...
T Consensus 58 ~~ii~EYf~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~lle~l 136 (358)
T 3eiq_C 58 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTNDVEKSFDKLLKDL 136 (358)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTTCCGGGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTTT-TSCCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CCHHH-------------HHHHHHhCCCCCcccHHHHHHHHHhcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhh
Q 040643 544 GRIQE-------------AYLVFNKIDAKDNISWNGLISGFAQSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLA 610 (968)
Q Consensus 544 g~~~~-------------A~~~f~~m~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~ 610 (968)
.++.- |+.+.+.+..+....- +.+........+|++.-+.+.... .....+.+.+...+
T Consensus 137 dDl~lDiP~a~~~la~flaRaV~d~~l~~~~l~~---~~~~~~~~~~~~~l~~a~~~L~~~-----~~~~~~~~~WG~g~ 208 (358)
T 3eiq_C 137 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDS---YKGTVDCVQARAALDKATVLLSMS-----KGGKRKDSVWGSGG 208 (358)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTCSCSSTTGG---GC---CCHHHHHHHHHHHHHHTC--------------CCCCCC
T ss_pred hhhccccccHHHHHHHHHHHHHHhCCCCHHHHHH---HhhcccchHHHHHHHHHHHHHhcc-----chHHHHHHhcCCCC
Q ss_pred hHHHHHHHHHHHHHhCCCCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCC---CHHHHHHHHHHHHhcCCH--HHHHHHH
Q 040643 611 NIKQGKQVHAMIIKTGYDSETEASNSLITLYAKCGSIDDAKREFLEMPEK---NEVSWNAMITGFSQHGYA--LEAINLF 685 (968)
Q Consensus 611 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~--~~A~~l~ 685 (968)
......++-..+ +.++.=|...|+.++|.+.++++..| ..+...++..++-+.++. +...+++
T Consensus 209 ~~~~veelkkki------------~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL 276 (358)
T 3eiq_C 209 GQQPVNHLVKEI------------DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLL 276 (358)
T ss_dssp SSSCHHHHHHHH------------HHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHH
T ss_pred CCccHHHHHHHH------------HHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHH
Q ss_pred HHHHHCCCCCChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC
Q 040643 686 EKMKKHDVMPNHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEP 763 (968)
Q Consensus 686 ~~m~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 763 (968)
..+...|+-+......++.. -...+..+.-+ .|. ....+.++.-....|-+.. .++..+|..+
T Consensus 277 ~~L~~~glls~~q~~~Gf~~----------vl~~ldDl~lD---iP~A~~~la~~varai~~g~l~~--~f~~~~p~r~ 340 (358)
T 3eiq_C 277 KSLWKSSTITIDQMKRGYER----------IYNEIPDINLD---VPHSYSVLERFVEECFQAGIISK--QLRDLCPSRG 340 (358)
T ss_dssp HHHHHTTCSCHHHHHHHHHH----------HHHHHHHHHHH---CTTHHHHHHHHHHHHHHHTSSCH--HHHTTCCCC-
T ss_pred HHHHHCCCCCHHHHHHHHHH----------HHHhccHhhcc---cccHHHHHHHHHHHHHHCCCCCH--HHHHhCcccC
No 294
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=35.29 E-value=1e+02 Score=33.22 Aligned_cols=96 Identities=8% Similarity=-0.084 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH--HHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcch----HH
Q 040643 664 SWNAMITGFSQHGYALEAINLFEKMKKHDVMPNHV--TFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEH----YA 737 (968)
Q Consensus 664 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~----y~ 737 (968)
++..+..-|...|+.++|.+.|.++...-..+... .+..++..|...+++..+..+.++......-.++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 56678888999999999999999999865555543 5788889999999999999999988654433333221 22
Q ss_pred HHHHHHhhcCChHHHHHHHHhC
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM 759 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m 759 (968)
+-+-.+...+++.+|-..+-+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHH
Confidence 2333445678899988776654
No 295
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=35.10 E-value=7.1 Score=21.90 Aligned_cols=13 Identities=38% Similarity=1.329 Sum_probs=9.6
Q ss_pred ccCCCcC--CCCCCC
Q 040643 956 HFEGGVC--SCRDYW 968 (968)
Q Consensus 956 ~f~~g~c--sc~d~w 968 (968)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4788888 577766
No 296
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=34.19 E-value=2.3e+02 Score=25.70 Aligned_cols=79 Identities=14% Similarity=0.156 Sum_probs=49.6
Q ss_pred HhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---------------C-ChH-HHHHHH
Q 040643 642 AKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKKHDVM---------------P-NHV-TFVGVL 704 (968)
Q Consensus 642 ~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~---------------P-d~~-t~~~ll 704 (968)
--.|....|.-++.....-...-|.++ +|-+..++.+|+..++..++..+. | |.. -++.+.
T Consensus 44 yyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a 121 (242)
T 3kae_A 44 YLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLG 121 (242)
T ss_dssp HHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHH
T ss_pred hhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHH
Confidence 345777777666655443233333332 456778888888888888854443 3 333 344455
Q ss_pred HHHcccCcHHHHHHHHHH
Q 040643 705 SACSHVGLVNEGLRYFES 722 (968)
Q Consensus 705 ~a~~~~g~~~~a~~~~~~ 722 (968)
..|.+.|..+||..+|..
T Consensus 122 ~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 122 DLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcCHHHhhhHhhh
Confidence 578888888888888863
No 297
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=33.55 E-value=6.3 Score=30.55 Aligned_cols=13 Identities=54% Similarity=1.081 Sum_probs=10.8
Q ss_pred cccccCChhhHHH
Q 040643 923 KNLRVCNDCHNWI 935 (968)
Q Consensus 923 kn~r~c~dch~~~ 935 (968)
|--|||.|||+..
T Consensus 20 kldrVCdDCyNLy 32 (78)
T 1j0t_A 20 KVVRVCEDCTNIF 32 (78)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5569999999876
No 298
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=32.65 E-value=2.9e+02 Score=25.30 Aligned_cols=60 Identities=7% Similarity=0.010 Sum_probs=26.3
Q ss_pred CChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 040643 629 SETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMK 689 (968)
Q Consensus 629 ~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 689 (968)
++..+-...+..+++.|..+....+...+..+|...-...+.++...|. .+++..+.++.
T Consensus 119 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l 178 (201)
T 3ltj_A 119 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLA 178 (201)
T ss_dssp SSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 3444444445555555543333333333334444444444444444443 23444444444
No 299
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=31.28 E-value=15 Score=27.36 Aligned_cols=20 Identities=25% Similarity=0.509 Sum_probs=16.7
Q ss_pred ceEEEecCCcccccCCCcCC
Q 040643 944 RTIVVRDANRFHHFEGGVCS 963 (968)
Q Consensus 944 r~i~~rd~~~~h~f~~g~cs 963 (968)
.-|=+.|.+-.|+||||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45678899999999999854
No 300
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=31.27 E-value=3.2e+02 Score=25.29 Aligned_cols=62 Identities=8% Similarity=0.042 Sum_probs=31.2
Q ss_pred CCChhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 040643 628 DSETEASNSLITLYAKCGSIDDAKREFLEMPEKNEVSWNAMITGFSQHGYALEAINLFEKMKK 690 (968)
Q Consensus 628 ~~~~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 690 (968)
.++..+-...+..+++.|..+....+...+..+|...-...+.++...|. .+++..+.++.+
T Consensus 123 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 123 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 34444555555555555554433334444445555555555555555554 345555555544
No 301
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=29.78 E-value=1.3e+02 Score=26.01 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=40.9
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCC--hhhHHHHHHHhhhcCCcCC
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGY--CEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 595 (968)
+.++.-|...|+.++|.+.++++..|. .+....+..++-+.+. .+....++..+...|+-+.
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567888888899999999999887652 2334444555555432 3456777777776664443
No 302
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=29.18 E-value=3.6e+02 Score=25.24 Aligned_cols=61 Identities=7% Similarity=-0.093 Sum_probs=38.6
Q ss_pred hHHHHHHHhcCChhHHHHHHhhCCCCC---cchHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 040643 354 GSMLDLYVKCSDVETAYKFFLTTETEN---VVLWNVMLVAYGQLNDLSESFQIFKQMQTEGLTPN 415 (968)
Q Consensus 354 ~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 415 (968)
.+.+...++.|+.+-+..+++.-...+ ..-+ +.+...+..|+.+-+..+++.+.+.|..++
T Consensus 122 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~-t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN-TVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp SSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-CHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 344555666777777777776544332 2222 344555677888888888888888876553
No 303
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.76 E-value=4.1e+02 Score=26.89 Aligned_cols=25 Identities=16% Similarity=0.227 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHhh
Q 040643 564 WNGLISGFAQSGYCEGALQVFSQMT 588 (968)
Q Consensus 564 ~~~li~~~~~~g~~~~A~~l~~~m~ 588 (968)
.+.++.-|...|+.++|.+.++++.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~ 193 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELE 193 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcC
Confidence 4567777878888888888888775
No 304
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=27.49 E-value=5.6e+02 Score=26.95 Aligned_cols=211 Identities=9% Similarity=0.048 Sum_probs=96.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCCCCC-----hhHHhHHhhHHHhcCCHHHHHHHHhcCC--------CCCHHHHHHH
Q 040643 602 VVSAAANLANIKQGKQVHAMIIKTGYDSE-----TEASNSLITLYAKCGSIDDAKREFLEMP--------EKNEVSWNAM 668 (968)
Q Consensus 602 ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-----~~~~~~li~~y~k~g~~~~A~~~f~~~~--------~~d~~~~~~l 668 (968)
+...+...|++.+|..+...+.+.--..| ..++-.-+.+|...+++.++...+.... .|.+..---+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 34444555555555555544444211111 2234444556666666666665554332 2211111111
Q ss_pred --HHHHH-hcCCHHHHHHHHHHHHH----CCCCCCh---HHHHHHHHHHcccCcHHHHHHHHH-HhhhhcCCCCCcchHH
Q 040643 669 --ITGFS-QHGYALEAINLFEKMKK----HDVMPNH---VTFVGVLSACSHVGLVNEGLRYFE-SMSTEYGLVPKPEHYA 737 (968)
Q Consensus 669 --i~~~~-~~g~~~~A~~l~~~m~~----~g~~Pd~---~t~~~ll~a~~~~g~~~~a~~~~~-~m~~~~~i~p~~~~y~ 737 (968)
.-.+. ..+++.+|...|-+..+ .| .|.. ..|. ++.+... +...+-..++. .....| ..|....+.
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~-~~~~~~~lkYl-vL~aLl~-~~r~el~~~l~~~~~~~~-~~pei~~l~ 260 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVD-SVKALTSLKYM-LLCKIML-GQSDDVNQLVSGKLAITY-SGRDIDAMK 260 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTC-HHHHHHHHHHH-HHHHHHT-TCGGGHHHHHHSHHHHTT-CSHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhcccccc-cHHHHHHHHHH-HHHHHHc-CCHHHHHHHhcccccccc-CCccHHHHH
Confidence 12234 56777777777666542 11 1221 1232 2222222 22222222221 111223 346555555
Q ss_pred HHHHHHhhcCChHHHHHHHHhC--CCCCCHHH---HHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhc
Q 040643 738 CVVDLLGRAGCLSRAREFTEQM--PIEPDAMV---WRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAA 812 (968)
Q Consensus 738 ~lv~~l~r~G~~~eA~~~~~~m--~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 812 (968)
.++.+ .+.|++.+..++++.. .+..|... |..|...-+. .+..+++ .|-..-....++...--
T Consensus 261 ~L~~a-~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~--------~~L~~i~--~pYsrIsl~~iA~~l~l- 328 (394)
T 3txn_A 261 SVAEA-SHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLE--------QNLCRII--EPYSRVQVAHVAESIQL- 328 (394)
T ss_dssp HHHHH-HHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHH--------HHHHHHH--TTCSEEEHHHHHHHHTC-
T ss_pred HHHHH-HHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--------HHHHHHh--HhhceeeHHHHHHHHCc-
Confidence 55554 4567888877777766 35556543 3333322222 2233333 56666555555554432
Q ss_pred CCcchHHHHHHHHHhCC
Q 040643 813 GKWDCRDQIRQIMKDRG 829 (968)
Q Consensus 813 g~~~~a~~~~~~m~~~g 829 (968)
.-+++....-.|-..|
T Consensus 329 -s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 329 -PMPQVEKKLSQMILDK 344 (394)
T ss_dssp -CHHHHHHHHHHHHHTT
T ss_pred -CHHHHHHHHHHHHHCC
Confidence 3467777655565554
No 305
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=27.30 E-value=3.6e+02 Score=24.64 Aligned_cols=147 Identities=16% Similarity=0.121 Sum_probs=74.9
Q ss_pred HHHHHhhccCChhHHHHHHhhCCCCCcccHHHHHHHHHcCCChhHHHHHHHHhhccccCCCcccHHHHHHHHhccCChHH
Q 040643 254 ALVTLYSRSGNLTSAEQIFSKMQQRDGVTYNSLISGLAQCGYSDKALELFEKMQLDCLKPDCVTVASLVSACASVGAFRT 333 (968)
Q Consensus 254 ~Li~~y~~~g~~~~A~~~f~~m~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~~~~ 333 (968)
..+..+.+.|..+....+.+.+..+|...-...+.++.+.|.. ++...+.++.. .|+...-...+.++...++.+.
T Consensus 33 ~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~~ 108 (201)
T 3ltj_A 33 AAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDERA 108 (201)
T ss_dssp HHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHHH
Confidence 3333344444433344444444444444444444555555543 23333333332 2455555555556665555433
Q ss_pred HHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 040643 334 GEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYGQLNDLSESFQIFKQMQT 409 (968)
Q Consensus 334 a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 409 (968)
...+...+ -.++..+-...+....+.++.+....+...+..++...-...+.++.+.|. .++...+..+..
T Consensus 109 ~~~L~~~l----~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~~~l~ 179 (201)
T 3ltj_A 109 VEPLIKAL----KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE 179 (201)
T ss_dssp HHHHHHHT----TCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHH----cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence 33332221 255666666677777777765555555555556666666666667766665 345555555543
No 306
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=25.27 E-value=5.6e+02 Score=26.13 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=10.0
Q ss_pred HHHHHHhcCChhHHHHHHhh
Q 040643 356 MLDLYVKCSDVETAYKFFLT 375 (968)
Q Consensus 356 Li~~y~~~g~~~~A~~~f~~ 375 (968)
.+...+..|+++-...+++.
T Consensus 23 ~L~~Aa~~g~~~~v~~Ll~~ 42 (364)
T 3ljn_A 23 KIHVAARKGQTDEVRRLIET 42 (364)
T ss_dssp HHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 33444455555555555544
No 307
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.14 E-value=3.4e+02 Score=25.39 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=45.0
Q ss_pred cHHHHHHHHH---hcCChhhHHHHHHHhhhcCCcCCcchHHHHHHHHhhhhh-----HHHHHHHHHHHHHhCCC
Q 040643 563 SWNGLISGFA---QSGYCEGALQVFSQMTQVGVQANLYTFGSVVSAAANLAN-----IKQGKQVHAMIIKTGYD 628 (968)
Q Consensus 563 ~~~~li~~~~---~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~a~~~~~~-----~~~a~~~~~~~~~~g~~ 628 (968)
..--+|+++. +-.+.+.|+-++.+|.+.| .|..+.-..++.|....|. +..+...++.....|++
T Consensus 13 ~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 13 AHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 3344566664 4578999999999999999 8877777777777766653 44455555555555653
No 308
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.77 E-value=2.2e+02 Score=31.35 Aligned_cols=119 Identities=12% Similarity=0.099 Sum_probs=68.9
Q ss_pred hhHHhHHhhHHHhcCCHHHHHHHHhcCCCCCH-------HHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHH--H
Q 040643 631 TEASNSLITLYAKCGSIDDAKREFLEMPEKNE-------VSWN-AMITGFSQHGYALEAINLFEKMKKHDVMPNHVT--F 700 (968)
Q Consensus 631 ~~~~~~li~~y~k~g~~~~A~~~f~~~~~~d~-------~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~Pd~~t--~ 700 (968)
..+.|.|+..|...+.++.|..+..+..-|.. ..|. -+...++..+++.+|.+.|.+.... .+|+... |
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk-ap~~~~a~gf 309 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK-APHNSKSLGF 309 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS-CSCSSSCSHH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCcchhhhhH
Confidence 45678888999999999999999998764421 2222 2345567789999999999988763 2222211 1
Q ss_pred -------HHHHHHHcccCcHHHHHHHHHHhhhhcCCCCCcchHHHHHHHHhhcCChHHHHHHHHh
Q 040643 701 -------VGVLSACSHVGLVNEGLRYFESMSTEYGLVPKPEHYACVVDLLGRAGCLSRAREFTEQ 758 (968)
Q Consensus 701 -------~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~~~~y~~lv~~l~r~G~~~eA~~~~~~ 758 (968)
..+...+ .|.+-+ ...|. .++.+.....|..++.++ |.|++++-.+.+++
T Consensus 310 r~~a~K~lI~V~LL--lG~iP~-r~lf~----q~~l~~~L~pY~~Lv~Av-r~GdL~~F~~~L~~ 366 (523)
T 4b4t_S 310 LQQSNKLHCCIQLL--MGDIPE-LSFFH----QSNMQKSLLPYYHLTKAV-KLGDLKKFTSTITK 366 (523)
T ss_dssp HHHHHHHHHHHHHH--HTCCCC-HHHHT----TTSCHHHHHHHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhHHhh--cCCCCC-hHHhh----chhHHHHHHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence 1111111 233221 11121 112222234477777775 77888776666654
No 309
>3syn_E ATP-binding protein YLXH; SRP GTPase, flagellum, protein transport, biosynthetic prote GTPase activating protein, type 3 secretion system; HET: GDP; 3.06A {Bacillus subtilis}
Probab=24.05 E-value=33 Score=18.40 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=13.9
Q ss_pred cCCcchHHHHHHHHHhC
Q 040643 812 AGKWDCRDQIRQIMKDR 828 (968)
Q Consensus 812 ~g~~~~a~~~~~~m~~~ 828 (968)
..+++.|..+|..|..+
T Consensus 3 mnrydqaatlrakmekr 19 (23)
T 3syn_E 3 MNRYDQAATLRAKMEKR 19 (26)
T ss_pred cchHHHHHHHHHHHHHH
Confidence 46889999999999754
No 310
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding, metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A {Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A* 3q44_A* 3t8v_A*
Probab=22.83 E-value=1.8e+02 Score=34.62 Aligned_cols=120 Identities=10% Similarity=-0.002 Sum_probs=67.6
Q ss_pred ChHHHHHHHHHHcccCcHHHHHHHHHHhhhhcCCCCC-cchHHHHHHHHhhcCChHHHHHHHHhCCCCC-CHHHHHHHHH
Q 040643 696 NHVTFVGVLSACSHVGLVNEGLRYFESMSTEYGLVPK-PEHYACVVDLLGRAGCLSRAREFTEQMPIEP-DAMVWRTLLS 773 (968)
Q Consensus 696 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~i~p~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p-~~~~~~~ll~ 773 (968)
|..--.+-|+++.+...-++++.-|.. ++.-.|- .+-|-.+.-.-.+.+-++...++.+.-.+.+ |+.-.++|++
T Consensus 730 nmtd~~~al~~~~~~~~~~~~l~~f~~---~~~~~~lv~dkwf~~qa~~~~~~~~~~v~~l~~h~~f~~~npn~~r~l~g 806 (889)
T 3ebh_A 730 YPSNWLTSLSVSAYFDKYFELYDKTYK---LSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYL 806 (889)
T ss_dssp CHHHHHHHHHHGGGSTTHHHHHHHHHH---HHTTSHHHHHHHHHHHHTCCCTTHHHHHHHHHHHTTTTCCCHHHHHHHHT
T ss_pred ChhHHHHHHHHHhcChhHHHHHHHHHH---HhCCCcchhhHhHHHhhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHH
Confidence 433344445555544444445554442 2222222 2222222222222333555555555544544 3666689999
Q ss_pred HHHhcCCh--------hHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHH
Q 040643 774 ACRVHKNM--------EIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQ 820 (968)
Q Consensus 774 ~~~~~g~~--------~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 820 (968)
++. +|. +-=.-+++.+++++|-|+..-..|...+..=.++++..+
T Consensus 807 ~f~--~n~~~fh~~~g~gy~~~~~~~~~ld~~np~~a~r~~~~~~~~~~~~~~r~ 859 (889)
T 3ebh_A 807 PFT--NNLRRFHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQ 859 (889)
T ss_dssp GGG--GCHHHHTCTTSHHHHHHHHHHHHHHTTCHHHHHHTTGGGGGGGGBCHHHH
T ss_pred HHh--cChhhccCCCCcHHHHHHHHHHHHcccChHHHHHHHHHHHHHHhcCHHHH
Confidence 875 333 223457889999999999888888888887788877765
No 311
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=22.55 E-value=1.2e+02 Score=27.03 Aligned_cols=62 Identities=13% Similarity=0.268 Sum_probs=40.0
Q ss_pred hhHHHHHHHcCCHHHHHHHHHhCCCCC---cccHHHHHHHHHhcCC--hhhHHHHHHHhhhcCCcCC
Q 040643 534 NALISLYARCGRIQEAYLVFNKIDAKD---NISWNGLISGFAQSGY--CEGALQVFSQMTQVGVQAN 595 (968)
Q Consensus 534 ~~Li~~y~k~g~~~~A~~~f~~m~~~d---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~ 595 (968)
+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 567888888899999999999887652 2334444455554322 3456677777776654433
No 312
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=22.21 E-value=75 Score=25.21 Aligned_cols=26 Identities=8% Similarity=-0.020 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCc
Q 040643 858 ADKIYDYLGNLNRRVAEIGYVQGRYS 883 (968)
Q Consensus 858 ~~~i~~~l~~l~~~~~~~g~~~~~~~ 883 (968)
..+|...+++-..++|..||.||.-.
T Consensus 15 lirIl~~ieekinELk~dG~ePDIiL 40 (103)
T 2pk8_A 15 LIRILGEIEEKMNELKMDGFNPDIIL 40 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 35678888888888999999999654
No 313
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=22.10 E-value=3.4e+02 Score=26.21 Aligned_cols=22 Identities=14% Similarity=0.015 Sum_probs=14.0
Q ss_pred HHHHHhcCChhhHHHHHHHhhh
Q 040643 568 ISGFAQSGYCEGALQVFSQMTQ 589 (968)
Q Consensus 568 i~~~~~~g~~~~A~~l~~~m~~ 589 (968)
++.+....++++|++++++...
T Consensus 25 LDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4556666777777776665543
No 314
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=21.00 E-value=4.9e+02 Score=23.92 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=47.8
Q ss_pred CCcccHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhhHhHHHHHHHhcCChhHHHHHHhhCCCCCcchHHHHHHHHH
Q 040643 313 PDCVTVASLVSACASVGAFRTGEQLHSYAIKVGISKDIIVEGSMLDLYVKCSDVETAYKFFLTTETENVVLWNVMLVAYG 392 (968)
Q Consensus 313 p~~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 392 (968)
||...-...+.++...++.+....+.. +. -.++..+-...+....+.|+.+....+...+.+++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 344444444555555444332222222 11 24566666666666666666554444445555566655566666666
Q ss_pred hcCCHHHHHHHHHHHHh
Q 040643 393 QLNDLSESFQIFKQMQT 409 (968)
Q Consensus 393 ~~g~~~~A~~l~~~m~~ 409 (968)
+.+. .++...+.++..
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 6665 445555555544
No 315
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.21 E-value=1.3e+02 Score=25.40 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=34.5
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHccCCCCcchHHHHHHHHhhcCCcchHHHHHHHH
Q 040643 746 AGCLSRAREFTEQMPIEPDAMVWRTLLSACRVHKNMEIGEYAANHLLELEPEDSATYVLLSNIYAAAGKWDCRDQIRQIM 825 (968)
Q Consensus 746 ~G~~~eA~~~~~~m~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 825 (968)
.|+.++|+++|++ |+..+++.+.+..+-+. ..-..|++|.+++.+|
T Consensus 35 ~g~k~~Al~lYk~-------------------------GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM 80 (116)
T 2dl1_A 35 LGQKEEAKNYYKQ-------------------------GIGHLLRGISISSKESE---------HTGPGWESARQMQQKM 80 (116)
T ss_dssp HTCHHHHHHHHHH-------------------------HHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHH-------------------------HHHHHHHhccccccCCC---------CCChhHHHHHHHHHHH
Confidence 4777888877754 66777777777664322 2335799999999999
Q ss_pred Hh
Q 040643 826 KD 827 (968)
Q Consensus 826 ~~ 827 (968)
++
T Consensus 81 ~~ 82 (116)
T 2dl1_A 81 KE 82 (116)
T ss_dssp HH
T ss_pred HH
Confidence 86
No 316
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=20.11 E-value=5.3e+02 Score=23.95 Aligned_cols=49 Identities=6% Similarity=0.116 Sum_probs=25.4
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCCh--hhHhHHHHHHHhcCChhHHHHHHhhCC
Q 040643 325 CASVGAFRTGEQLHSYAIKVGISKDI--IVEGSMLDLYVKCSDVETAYKFFLTTE 377 (968)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~Li~~y~~~g~~~~A~~~f~~~~ 377 (968)
.+..|+++..+. +++.|..++. ....+.+...++.|+++-+..+++.-.
T Consensus 16 A~~~g~~~~~~~----Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 16 ATQYGIYERCRE----LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHcCChHHHHH----HHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 344566554444 3445544432 122345556666677766666665544
Done!