BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040644
         (267 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B1ZLL0|PYRB_METPB Aspartate carbamoyltransferase OS=Methylobacterium populi (strain
           ATCC BAA-705 / NCIMB 13946 / BJ001) GN=pyrB PE=3 SV=1
          Length = 315

 Score = 31.2 bits (69), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 28/49 (57%)

Query: 75  AINHLSQSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQAL 123
           A  H +Q++ DA  I+ NKGG EG+  A    + +   A+   I++QAL
Sbjct: 139 AHEHPTQALLDALTIRRNKGGIEGLTVAICGDVLHSRVARSNIILLQAL 187


>sp|Q1E2B2|DRS1_COCIM ATP-dependent RNA helicase DRS1 OS=Coccidioides immitis (strain RS)
           GN=DRS1 PE=3 SV=1
          Length = 840

 Score = 31.2 bits (69), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 19/167 (11%)

Query: 117 AIVIQALERAFPRPI---LTMVRAVLPESKLAREFF------AVFTTIFFAWLVGPCEVR 167
           A +I  LER   RP     + V  ++P  +LA + +      A +T I F  LVG   +R
Sbjct: 372 AFIIPILERLLYRPRKVPTSRVAILMPTRELAVQCYNVATKLATYTDITFCQLVGGFSLR 431

Query: 168 ESEVNGKTEKNVVHIKKCRFLEE-----SNCVGMCTNLCKMPSQTFIKDSLGMPVNMVPN 222
           E E   K   +V+     RF++      S  V     L    +   ++D     +N + N
Sbjct: 432 EQENVLKQRPDVIIATPGRFIDHMRNSASFTVDTLEILVLDEADRMLEDGFADELNEILN 491

Query: 223 FDDMSCEMIFGQEPLASSDDP----AFKQPCYKLCKESRRHTLNDLV 265
               S + +     +  S D        +P  +L  +S++HT+  LV
Sbjct: 492 TIPKSRQTMLFSATMTDSVDKLIRVGLNRPV-RLMVDSKKHTVGTLV 537


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.134    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,521,587
Number of Sequences: 539616
Number of extensions: 3624767
Number of successful extensions: 7898
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 7895
Number of HSP's gapped (non-prelim): 5
length of query: 267
length of database: 191,569,459
effective HSP length: 115
effective length of query: 152
effective length of database: 129,513,619
effective search space: 19686070088
effective search space used: 19686070088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)