Query 040644
Match_columns 267
No_of_seqs 95 out of 97
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 16:46:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1juq_A ADP-ribosylation factor 44.7 55 0.0019 27.2 6.7 46 79-126 14-59 (171)
2 1mhq_A ADP-ribosylation factor 42.1 1.1E+02 0.0037 24.8 7.9 46 79-126 2-47 (148)
3 3ldz_A STAM-1, signal transduc 41.8 75 0.0026 25.3 6.8 40 81-122 8-47 (140)
4 2hm3_A Nematocyst outer WALL a 39.6 10 0.00035 24.1 1.0 13 190-202 9-21 (31)
5 3e07_A Protein spaetzle; cysti 35.0 13 0.00044 29.9 1.2 25 172-197 34-58 (114)
6 1elk_A Target of MYB1; superhe 34.2 1.6E+02 0.0056 23.8 7.8 47 79-127 17-63 (157)
7 1x5b_A Signal transducing adap 33.0 1.1E+02 0.0039 25.0 6.7 51 66-126 11-61 (163)
8 3zyq_A Hepatocyte growth facto 32.5 79 0.0027 27.1 5.9 29 82-110 12-40 (226)
9 1dvp_A HRS, hepatocyte growth 31.8 1.3E+02 0.0046 25.3 7.2 32 79-110 6-37 (220)
10 2nx7_A Nematocyst outer WALL a 31.2 11 0.00039 23.4 0.2 16 188-203 7-22 (28)
11 3rru_A TOM1L1 protein; structu 30.4 2.1E+02 0.0073 23.3 7.9 48 78-127 16-63 (152)
12 3g2s_A C-terminal fragment of 28.1 1.7E+02 0.0057 23.8 6.9 30 81-110 14-43 (149)
13 3v53_A RNA-binding protein 25; 27.0 89 0.003 25.3 4.9 72 63-139 35-107 (119)
No 1
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=44.70 E-value=55 Score=27.19 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 040644 79 LSQSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQALERA 126 (267)
Q Consensus 79 F~rkm~~~~G~~s~k~GYdglVe~a~~lm~~~~~~~q~~~v~~vL~sl 126 (267)
|...+.+++.-....++|..++|++..|..+.. ..+++++-+...|
T Consensus 14 ~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~--~~k~A~ral~krl 59 (171)
T 1juq_A 14 LESWLNKATNPSNRQEDWEYIIGFCDQINKELE--GPQIAVRLLAHKI 59 (171)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCc--cHHHHHHHHHHHh
Confidence 556778888888888999999999999987643 3445544443443
No 2
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=42.06 E-value=1.1e+02 Score=24.77 Aligned_cols=46 Identities=9% Similarity=0.000 Sum_probs=32.9
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 040644 79 LSQSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQALERA 126 (267)
Q Consensus 79 F~rkm~~~~G~~s~k~GYdglVe~a~~lm~~~~~~~q~~~v~~vL~sl 126 (267)
|-..+.+++.-....++|+..+|++..|..+. ...+++++-+...|
T Consensus 2 ~~~~iekATs~~l~~~dw~~~leicD~I~~~~--~~~k~a~rai~krl 47 (148)
T 1mhq_A 2 LELWLNKATDPSMSEQDWSAIQNFCEQVNTDP--NGPTHAPWLLAHKI 47 (148)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHHSS--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCC--ccHHHHHHHHHHHh
Confidence 44667888888888899999999999998754 34455554444444
No 3
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=41.80 E-value=75 Score=25.35 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=29.3
Q ss_pred HHHHHHhCCCCCCCchhHHHHHHHHHhccCCHHHHHHHHHHH
Q 040644 81 QSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQA 122 (267)
Q Consensus 81 rkm~~~~G~~s~k~GYdglVe~a~~lm~~~~~~~q~~~v~~v 122 (267)
..+.+++.-....++|+.++|++..|..+. ...+++++-+
T Consensus 8 ~~iekAT~~~l~~~dw~~ileicD~I~~~~--~~~k~a~rai 47 (140)
T 3ldz_A 8 QDVEKATSEMNTAEDWGLILDICDKVGQSR--TGPKDCLRSI 47 (140)
T ss_dssp HHHHHHTCTTSSSCCHHHHHHHHHHHTTST--THHHHHHHHH
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCC--cCHHHHHHHH
Confidence 556788888888899999999999998654 2344444433
No 4
>2hm3_A Nematocyst outer WALL antigen; disulfide, evolution, cysteine rich, structural protein; NMR {Hydra vulgaris} PDB: 2hm4_A 2hm5_A 2hm6_A
Probab=39.63 E-value=10 Score=24.13 Aligned_cols=13 Identities=46% Similarity=0.943 Sum_probs=11.7
Q ss_pred ccccccccccccc
Q 040644 190 ESNCVGMCTNLCK 202 (267)
Q Consensus 190 eSgC~GmCvN~CK 202 (267)
-|||.|-|-.-||
T Consensus 9 psgcsgdcypeck 21 (31)
T 2hm3_A 9 PSGCSGDCYPECK 21 (31)
T ss_dssp CTTCCGGGTTTTC
T ss_pred CCCcCccccCccC
Confidence 4899999999998
No 5
>3e07_A Protein spaetzle; cystine knot, TOLL ligand, antimicrobial, cytokine, developm protein, fungicide, glycoprotein, secreted; 2.40A {Drosophila melanogaster}
Probab=34.99 E-value=13 Score=29.91 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=17.2
Q ss_pred cCeeeeceEEeecceeeecccccccc
Q 040644 172 NGKTEKNVVHIKKCRFLEESNCVGMC 197 (267)
Q Consensus 172 dG~~~~sgV~IeKCRyLEeSgC~GmC 197 (267)
|-....++|+||+|+. +.+.|...|
T Consensus 34 N~~~y~Q~vriE~C~~-~g~~C~~~~ 58 (114)
T 3e07_A 34 NNDEYKQAIQIEECEG-ADQPCDFAA 58 (114)
T ss_dssp --CCCEEEEEEEEESS-TTSBCTTGG
T ss_pred eCCCcEEEEEEEEeCC-CCCcccccc
Confidence 3334678999999999 556666555
No 6
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=34.15 E-value=1.6e+02 Score=23.78 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=34.2
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 040644 79 LSQSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQALERAF 127 (267)
Q Consensus 79 F~rkm~~~~G~~s~k~GYdglVe~a~~lm~~~~~~~q~~~v~~vL~sl~ 127 (267)
+...+.+++.-....++|...+|++..|..+. ...+++++-+...|-
T Consensus 17 ~~~~IekATs~~l~~~Dw~~~leicD~I~~~~--~~~k~a~ral~krl~ 63 (157)
T 1elk_A 17 VGQRIEKATDGSLQSEDWALNMEICDIINETE--EGPKDALRAVKKRIV 63 (157)
T ss_dssp HHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHhc
Confidence 34567788887778889999999999998654 345566665555553
No 7
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=33.02 E-value=1.1e+02 Score=25.02 Aligned_cols=51 Identities=16% Similarity=0.216 Sum_probs=35.1
Q ss_pred cCCcHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Q 040644 66 YNDGWFDQIAINHLSQSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQALERA 126 (267)
Q Consensus 66 Y~ds~lD~~~i~lF~rkm~~~~G~~s~k~GYdglVe~a~~lm~~~~~~~q~~~v~~vL~sl 126 (267)
..++++| ..+.+++.-....++|..++|++..|..+. ...+++++-+...|
T Consensus 11 ~~~~p~~--------~~IekATs~~~~~~Dw~~~leicD~I~~~~--~~~keA~ral~krl 61 (163)
T 1x5b_A 11 FTANPFE--------QDVEKATNEYNTTEDWSLIMDICDKVGSTP--NGAKDCLKAIMKRV 61 (163)
T ss_dssp CCCCTTH--------HHHHHHTCTTCSSCCHHHHHHHHHHHHHSS--SHHHHHHHHHHHHH
T ss_pred cCCChHH--------HHHHHHcCCCCCCcCHHHHHHHHHHHhCCC--ccHHHHHHHHHHHH
Confidence 4456666 566788887788899999999999998754 23445544443333
No 8
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=32.49 E-value=79 Score=27.14 Aligned_cols=29 Identities=10% Similarity=0.094 Sum_probs=24.2
Q ss_pred HHHHHhCCCCCCCchhHHHHHHHHHhccC
Q 040644 82 SVQDATGIKNNKGGYEGMVEAAKAVLRNF 110 (267)
Q Consensus 82 km~~~~G~~s~k~GYdglVe~a~~lm~~~ 110 (267)
.+.+++.-....++|+.++|++..|..+.
T Consensus 12 ~i~kAT~~~~~~~dw~~ileicD~I~~~~ 40 (226)
T 3zyq_A 12 LLDKATSQLLLETDWESILQICDLIRQGD 40 (226)
T ss_dssp HHHHHTCTTCSSCCHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCCcCHHHHHHHHHHHhCCC
Confidence 56788888888899999999999998653
No 9
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=31.84 E-value=1.3e+02 Score=25.28 Aligned_cols=32 Identities=6% Similarity=0.125 Sum_probs=25.4
Q ss_pred HHHHHHHHhCCCCCCCchhHHHHHHHHHhccC
Q 040644 79 LSQSVQDATGIKNNKGGYEGMVEAAKAVLRNF 110 (267)
Q Consensus 79 F~rkm~~~~G~~s~k~GYdglVe~a~~lm~~~ 110 (267)
|-..+.+++.-....++|..++|++..|..+.
T Consensus 6 ~~~~ie~AT~~~~~~~dw~~~leicd~i~~~~ 37 (220)
T 1dvp_A 6 FCKNLENATSHLRLEPDWPSILLICDEINQKD 37 (220)
T ss_dssp HHHHHHHHHCTTCSSCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCCcCHHHHHHHHHhhcCCC
Confidence 55667788887777889999999999887544
No 10
>2nx7_A Nematocyst outer WALL antigen; cysteine rich, disulfide bonds, rich in turns, structural protein; NMR {Hydra vulgaris}
Probab=31.23 E-value=11 Score=23.42 Aligned_cols=16 Identities=25% Similarity=0.945 Sum_probs=14.3
Q ss_pred eecccccccccccccC
Q 040644 188 LEESNCVGMCTNLCKM 203 (267)
Q Consensus 188 LEeSgC~GmCvN~CKi 203 (267)
|++.||.+-|..-|.+
T Consensus 7 lqqpgcssacapacrl 22 (28)
T 2nx7_A 7 LQQPGCSSACAPACRL 22 (28)
T ss_dssp HHSTTCCGGGTTTCCH
T ss_pred ccCCCccccccchhhe
Confidence 7889999999999975
No 11
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=30.44 E-value=2.1e+02 Score=23.29 Aligned_cols=48 Identities=8% Similarity=0.040 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCCCCchhHHHHHHHHHhccCCHHHHHHHHHHHHHHhC
Q 040644 78 HLSQSVQDATGIKNNKGGYEGMVEAAKAVLRNFDQAQQRAIVIQALERAF 127 (267)
Q Consensus 78 lF~rkm~~~~G~~s~k~GYdglVe~a~~lm~~~~~~~q~~~v~~vL~sl~ 127 (267)
-|...+.+++.-....++|+.++|++..|.... ..-+++++-+...|-
T Consensus 16 ~~~~~IekATs~~l~~~Dw~~ileicD~In~~~--~~pkeA~ral~KRl~ 63 (152)
T 3rru_A 16 SVGHLIEKATFAGVQTEDWGQFMHICDIINTTQ--DGPKDAVKALKKRIS 63 (152)
T ss_dssp HHHHHHHHHTCSSCCSCCHHHHHHHHHHHHHST--THHHHHHHHHHHHHT
T ss_pred hHHHHHHHHcCCCCCCccHHHHHHHHHHHhCCC--ccHHHHHHHHHHHHc
Confidence 345567788888888899999999999998754 345556665555554
No 12
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=28.15 E-value=1.7e+02 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.189 Sum_probs=23.7
Q ss_pred HHHHHHhCCCCCCCchhHHHHHHHHHhccC
Q 040644 81 QSVQDATGIKNNKGGYEGMVEAAKAVLRNF 110 (267)
Q Consensus 81 rkm~~~~G~~s~k~GYdglVe~a~~lm~~~ 110 (267)
..+.+++.-....++|+.++|++..|....
T Consensus 14 ~~IekATs~~l~~~dw~~ileicD~I~~~~ 43 (149)
T 3g2s_A 14 ARINRATNPLNKELDWASINGFCEQLNEDF 43 (149)
T ss_dssp HHHHHHSCTTCSSCCHHHHHHHHHHGGGSS
T ss_pred HHHHHHcCCCCCCcCHHHHHHHHHHHHCCC
Confidence 345777877777889999999999888654
No 13
>3v53_A RNA-binding protein 25; PWI, RNA-binding domain; 2.90A {Homo sapiens}
Probab=26.95 E-value=89 Score=25.28 Aligned_cols=72 Identities=11% Similarity=0.106 Sum_probs=52.7
Q ss_pred ccccCCcHHHHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHH-HHhccCCHHHHHHHHHHHHHHhCCchhHHHHHhhc
Q 040644 63 KTVYNDGWFDQIAINHLSQSVQDATGIKNNKGGYEGMVEAAK-AVLRNFDQAQQRAIVIQALERAFPRPILTMVRAVL 139 (267)
Q Consensus 63 ~~~Y~ds~lD~~~i~lF~rkm~~~~G~~s~k~GYdglVe~a~-~lm~~~~~~~q~~~v~~vL~sl~Pp~~~~~fr~lf 139 (267)
=..|+++.+|+-+--+-.+|+.+.+|...+ .|||... .|....+|.+-++-+..+|..=-..++..+.|.|+
T Consensus 35 W~~vd~~~i~~~lkPWI~kKI~E~LG~eEd-----~LVdfI~~~L~~~~~pk~l~~~L~~~LDeeA~~FV~kLWrlLI 107 (119)
T 3v53_A 35 WSIVDSILMERRIRPWINKKIIEYIGEEEA-----TLVDFVCSKVMAHSSPQSILDDVAMVLDEEAEVFIVKMWRLLI 107 (119)
T ss_dssp TTTSCHHHHHHTHHHHHHHHHHHHTC---C-----HHHHHHHHHHHTTCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345667788888889999999999998643 4788775 44555678777777888887766777777777766
Done!