BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040645
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 163 bits (412), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 88/230 (38%), Positives = 126/230 (54%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID +PEYMK +KALLD+Y Y + YAK M L Y EA
Sbjct: 327 ERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEA 386
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
KW + Y PSF+E+K+ AL + G+ +A+ SFV +GD I T + F+ + K ++A+
Sbjct: 387 KWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGD-IVTPETFKWAASDPKIIQASTI 445
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I RFMDD+A +KF+ +R SA+ECY ++GV+ +WKD+N+E L P
Sbjct: 446 ICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQEFLKP 505
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T L R L AR +Y +G D YT+ K + LL EP+A+
Sbjct: 506 TEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 323 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 382
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 383 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 440
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 441 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 500
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 501 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 321 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 380
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 381 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 438
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 439 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 498
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 499 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 321 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 380
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 381 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 438
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 439 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 498
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 499 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 321 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 380
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 381 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 438
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 439 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 498
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 499 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 130 bits (328), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 308 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 367
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 368 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 425
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 426 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 485
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 486 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 535
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 130 bits (327), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 323 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVES 382
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 383 TWFIEGYTPPVSEYLSNALATTTYYLLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 440
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 441 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 500
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 501 TPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 130 bits (327), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 321 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 380
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 381 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 438
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 439 ICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 498
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 499 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 321 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 380
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 381 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 438
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 439 IWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 498
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 499 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 129 bits (324), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 80/230 (34%), Positives = 119/230 (51%), Gaps = 3/230 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI ID LP+YMK +KA+LD+Y S+ + +A + M+E++ Y E+
Sbjct: 321 QRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES 380
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
W +GY P EY S AL + + +A S+ LG AT+ +FE + KN K ++A+
Sbjct: 381 TWFIEGYTPPVSEYLSNALATTTYYYLATTSY--LGMKSATEQDFEWLSKNPKILEASVI 438
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I R +DD A Y+ E+ RG I + +EC +G+S +WKDINE LL P
Sbjct: 439 IWRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRP 498
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTH-SLMMKRQVALLLTEPLAI 233
T S L +L AR Y D YTH ++K + LL + + I
Sbjct: 499 TPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEEVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 94.7 bits (234), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 59/228 (25%), Positives = 101/228 (44%), Gaps = 3/228 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WD+ I+ LP+YMK F AL + + Y + +L + EA
Sbjct: 325 ERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEA 384
Query: 65 KWLYKGYIPSFDEYKSVALRSI-GFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQ 123
KWLY P+FD+Y A +S G L + A F + + K+ E + K +
Sbjct: 385 KWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNI--KKEEIENLQKYHDIISRPS 442
Query: 124 TIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLN 183
I R +D+A E RG ++V CY G+S ++WK +N+E L
Sbjct: 443 HIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKEKLG 502
Query: 184 PTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPL 231
+ + P ++ + AR H Y +G + + +++V ++TEP+
Sbjct: 503 GSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVLSVITEPI 550
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 101/218 (46%), Gaps = 4/218 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
++WDI + LP YM+ + AL + Y ++ LI Y EA
Sbjct: 343 QRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEA 402
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
KW YKG+ PS +EY + SIG +P+ F L D I ++ E + K V+A+ T
Sbjct: 403 KWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIE-EEAAESMHKYHDIVRASCT 461
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I+R DD+ E +RG +P +V+CY N+ S +WK +N+E++
Sbjct: 462 ILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKEMMT- 520
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRY--THSLMMK 220
++ S ++ AR +IY D + HSL+ K
Sbjct: 521 SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNK 558
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 87.8 bits (216), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 100/231 (43%), Gaps = 2/231 (0%)
Query: 3 LTKKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFT 62
L ++WDI ID LP+YM+ F AL + I Y +Q+ +L Y
Sbjct: 314 LIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMV 373
Query: 63 EAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKAT 122
EA+W Y G+ PS +EY + +SI + F + D TK+ + + K V+ +
Sbjct: 374 EARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSF-TKETVDSLYKYHDLVRWS 432
Query: 123 QTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELL 182
++R DD+ E RG +P +++CY + + S + WK +N E +
Sbjct: 433 SFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAERV 492
Query: 183 NPTTA-SLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLA 232
+ + + + R +Y +G T ++ +Q+ L EP A
Sbjct: 493 SKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPIIHQQMTRTLFEPFA 543
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 3/233 (1%)
Query: 4 TKKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTE 63
++WD+ + LP+YMK ++ DI +S+ ++ ++ ++ Y+ E
Sbjct: 585 VRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEE 644
Query: 64 AKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSV--KA 121
A+WL Y+P+ DEY + SIG + ++ + + + +++ E + + V +
Sbjct: 645 AEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALEKVDYPGRRVLTEL 704
Query: 122 TQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHG-VSXXXXXXXXXXXXXDSWKDINEE 180
I R DD YK E+ RG + S++ECY H + + K++ E
Sbjct: 705 NSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE 764
Query: 181 LLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLAI 233
L P + + R I+ DG L +K + L EPL +
Sbjct: 765 FLKPDDVPFACKKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 89/228 (39%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
K+WD I LP YM+ + + + + + Y ++++ +L+ YF EA
Sbjct: 322 KRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEA 381
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
KW + GY PS DEY ++A S+ + ++ + + + + +
Sbjct: 382 KWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGI 441
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSXXXXXXXXXXXXXDSWKDINEELLNP 184
I+R DD+ FE RG +P ++CY + S ++WKD+N +
Sbjct: 442 ILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAG 501
Query: 185 TTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVALLLTEPLA 232
+ R FIY G +A LL EP A
Sbjct: 502 YPFPDGMVAGAANIGRVAQFIYLHGDGFGVQHSKTYEHIAGLLFEPYA 549
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 76.3 bits (186), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 102/232 (43%), Gaps = 8/232 (3%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
K+WD+ L+D +P+ MK F + + + Y + + + Y EA
Sbjct: 558 KRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEA 617
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
+W Y+PSF+EY A SI V + S + G+ + T + I + ++ ++
Sbjct: 618 EWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGE-VLTDEVLSKIDRESRFLQLMGL 676
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECYKNQH-GVSXXXXXXXXXXXXXDSWKDINEELLN 183
R ++D Y+ E+ +G + SA++CY H +S ++ +++N E +N
Sbjct: 677 TGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVN 736
Query: 184 PTTASLPTLQRVLYF--ARSGHFIYDDGHD-RYTHSLMMKRQVALLLTEPLA 232
+P + + L F AR Y G +H + +K V L +P+A
Sbjct: 737 ---NKIPDIYKRLVFETARIMQLFYMQGDGLTLSHDMEIKEHVKNCLFQPVA 785
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 66/155 (42%), Gaps = 2/155 (1%)
Query: 5 KKWDIGLIDTLPEYMKFIFKALLDIYXXXXXXXXXXXXSYGISYAKQTMQELIMLYFTEA 64
K+WD L+ +PE M+ FK + +++ ++ + Y E
Sbjct: 527 KRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQER 586
Query: 65 KWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124
+WL GYIP+F+EY S+G P + + +G+ + D E + + +
Sbjct: 587 EWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELV-KDDVVEKVHYPSNMFELVSL 645
Query: 125 IVRFMDDIAGYKFEQKRGHIPSAVECY-KNQHGVS 158
R +D Y+ E+ RG S + CY K+ G +
Sbjct: 646 SWRLTNDTKTYQAEKARGQQASGIACYMKDNPGAT 680
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,009,967
Number of Sequences: 62578
Number of extensions: 199654
Number of successful extensions: 376
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 17
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)