Query 040645
Match_columns 233
No_of_seqs 157 out of 791
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 16:47:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040645.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040645hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 7E-72 2.4E-76 524.5 22.0 230 2-233 324-554 (554)
2 3m00_A Aristolochene synthase; 100.0 5.6E-71 1.9E-75 518.0 22.4 230 2-233 320-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 2E-70 7E-75 515.1 23.5 229 2-232 322-551 (555)
4 1n1b_A (+)-bornyl diphosphate 100.0 1.8E-66 6.2E-71 489.7 22.3 229 2-232 319-549 (549)
5 2ong_A 4S-limonene synthase; m 100.0 7.2E-66 2.5E-70 485.5 25.4 229 2-232 313-543 (543)
6 3p5p_A Taxadiene synthase; cla 100.0 1.5E-65 5E-70 497.2 23.4 229 2-233 524-756 (764)
7 3sdr_A Alpha-bisabolene syntha 100.0 1.5E-65 5.1E-70 500.1 22.2 230 2-233 583-817 (817)
8 3s9v_A Abietadiene synthase, c 100.0 5.6E-65 1.9E-69 494.3 22.0 227 2-232 555-785 (785)
9 2j5c_A 1,8-cineole synthase; t 100.0 5.1E-65 1.7E-69 481.3 20.5 229 2-232 340-569 (569)
10 1ps1_A Pentalenene synthase; a 100.0 5.4E-38 1.8E-42 279.2 13.7 178 2-191 99-277 (337)
11 1di1_A Aristolochene synthase; 100.0 3.9E-37 1.3E-41 269.2 11.7 165 2-181 92-264 (300)
12 3kb9_A EPI-isozizaene synthase 100.0 8.9E-36 3E-40 270.2 13.5 160 15-180 152-311 (382)
13 3bny_A Aristolochene synthase; 100.0 3.9E-35 1.3E-39 259.1 11.7 165 2-181 106-278 (320)
14 3v1v_A 2-MIB synthase, 2-methy 100.0 2.3E-30 7.9E-35 237.8 13.5 153 22-181 237-390 (433)
15 3pya_A ENT-copalyl diphosphate 99.9 6.4E-27 2.2E-31 225.2 7.2 177 2-232 528-720 (727)
16 1yyq_A Trichodiene synthase; t 99.4 9.9E-13 3.4E-17 118.5 11.8 148 27-180 128-276 (374)
17 3ipi_A Geranyltranstransferase 94.8 0.64 2.2E-05 40.0 13.3 143 44-201 127-278 (295)
18 3lmd_A Geranylgeranyl pyrophos 94.4 0.61 2.1E-05 41.3 12.5 104 44-155 160-275 (360)
19 3mzv_A Decaprenyl diphosphate 92.5 4.5 0.00015 35.3 14.9 108 41-155 136-255 (341)
20 3rmg_A Octaprenyl-diphosphate 92.4 4.1 0.00014 35.4 14.4 90 41-136 130-220 (334)
21 3oyr_A Trans-isoprenyl diphosp 92.0 3.1 0.0001 36.5 13.2 91 41-137 148-239 (345)
22 1rtr_A Geranyltranstransferase 91.5 1.6 5.3E-05 37.6 10.5 112 54-179 148-271 (301)
23 2ftz_A Geranyltranstransferase 91.2 5.1 0.00017 34.1 13.4 121 44-179 134-264 (284)
24 3m0g_A Farnesyl diphosphate sy 91.1 1.3 4.4E-05 38.1 9.6 116 47-178 138-268 (297)
25 3p8l_A Geranyltranstransferase 91.1 2.7 9.1E-05 36.2 11.6 112 54-179 156-279 (302)
26 3ts7_A Geranyltranstransferase 90.5 4 0.00014 35.5 12.2 111 54-178 158-281 (324)
27 2h8o_A Geranyltranstransferase 90.3 2.5 8.5E-05 36.9 10.8 112 54-179 192-315 (335)
28 3p8r_A Geranyltranstransferase 89.5 2.5 8.6E-05 36.3 10.1 111 54-178 158-281 (302)
29 3lsn_A Geranyltranstransferase 89.3 3 0.0001 35.9 10.4 110 56-178 154-275 (304)
30 3pko_A Geranylgeranyl pyrophos 88.5 11 0.00039 32.6 13.7 103 44-154 143-258 (334)
31 1wy0_A Geranylgeranyl pyrophos 88.4 3.4 0.00012 36.0 10.3 105 44-154 137-252 (342)
32 4f62_A Geranyltranstransferase 88.4 3.9 0.00013 35.4 10.5 111 55-179 152-275 (317)
33 3pde_A Farnesyl-diphosphate sy 87.7 7.2 0.00025 33.6 11.7 110 55-178 156-277 (309)
34 4dhd_A Polyprenyl synthetase; 87.5 4.9 0.00017 35.3 10.8 89 44-136 132-231 (358)
35 3uca_A Geranyltranstransferase 87.2 5.7 0.0002 34.5 10.9 113 54-179 180-304 (324)
36 1rqj_A Geranyltranstransferase 86.1 7.5 0.00026 33.2 11.0 112 54-179 152-276 (299)
37 3apz_A Geranyl diphosphate syn 85.9 13 0.00046 32.2 12.7 89 44-137 153-241 (348)
38 3lom_A Geranyltranstransferase 85.7 11 0.00036 32.6 11.7 113 54-178 158-282 (313)
39 3npk_A Geranyltranstransferase 85.6 16 0.00055 31.1 12.9 113 53-178 144-265 (291)
40 1wmw_A Geranylgeranyl diphosph 84.4 10 0.00035 32.8 11.1 85 44-136 130-218 (330)
41 3llw_A Geranyltranstransferase 84.3 7 0.00024 33.7 9.9 114 53-178 158-280 (311)
42 3nf2_A Putative polyprenyl syn 84.0 9.1 0.00031 33.5 10.7 86 45-136 144-230 (352)
43 3acx_A Dehydrosqualene synthas 82.2 21 0.00073 30.0 12.8 128 51-192 108-244 (293)
44 2j1p_A Geranylgeranyl pyrophos 76.7 3.8 0.00013 35.0 5.6 110 55-179 161-272 (293)
45 1v4e_A Octoprenyl-diphosphate 76.2 17 0.00059 30.9 9.6 87 41-138 124-212 (299)
46 2qis_A Farnesyl pyrophosphate 75.8 34 0.0012 30.0 11.7 106 44-155 176-298 (374)
47 2her_A Fragment, farnesyl pyro 75.4 33 0.0011 30.2 11.4 105 44-155 168-284 (368)
48 2q80_A Geranylgeranyl pyrophos 74.8 23 0.0008 30.1 10.1 85 44-136 111-195 (301)
49 1uby_A FPS, farnesyl diphospha 74.2 32 0.0011 30.1 11.1 89 44-137 169-264 (367)
50 3tc1_A Octaprenyl pyrophosphat 73.6 41 0.0014 28.8 11.4 101 44-155 122-235 (315)
51 2e8v_A Geranylgeranyl pyrophos 72.3 15 0.00052 31.8 8.4 86 45-136 132-220 (340)
52 1yhl_A Farnesyl pyrophosphate 71.4 34 0.0012 29.8 10.5 106 44-155 151-284 (362)
53 3aqb_B Component B of hexapren 71.1 21 0.0007 30.7 8.9 88 44-136 130-217 (325)
54 3kra_B Geranyl diphosphate syn 70.4 8.1 0.00028 32.6 6.1 93 56-178 151-244 (274)
55 2azj_A Geranylgeranyl pyrophos 64.3 28 0.00095 29.5 8.2 118 45-179 136-258 (289)
56 4hd1_A Squalene synthase HPNC; 61.7 71 0.0024 26.8 13.0 127 53-194 106-241 (294)
57 2q58_A Fragment, farnesyl pyro 60.6 16 0.00055 32.0 6.2 105 46-155 170-284 (368)
58 3fau_A NEDD4-binding protein 2 54.0 12 0.00042 25.2 3.4 23 155-177 6-28 (82)
59 3lk5_A Geranylgeranyl pyrophos 51.9 64 0.0022 28.4 8.7 78 53-136 184-263 (380)
60 3dyh_A Farnesyl pyrophosphate 39.7 1.6E+02 0.0055 25.8 9.3 86 45-136 180-284 (390)
61 1nh1_A Avirulence B protein; h 38.7 53 0.0018 27.9 5.5 71 3-85 46-120 (330)
62 2ihi_A Pyrophosphate synthase; 38.7 1.4E+02 0.0049 26.2 8.8 87 44-136 178-292 (395)
63 2zqe_A MUTS2 protein; alpha/be 38.6 30 0.001 23.5 3.5 21 155-175 10-30 (83)
64 1tr8_A Conserved protein (MTH1 37.7 18 0.00061 25.9 2.2 24 145-168 66-89 (102)
65 3mav_A Farnesyl pyrophosphate 37.5 80 0.0028 27.7 7.0 88 45-136 179-292 (395)
66 2d9i_A NEDD4-binding protein 2 36.8 29 0.001 24.0 3.3 21 155-175 14-34 (96)
67 2kw6_A Cyclin-dependent kinase 36.7 57 0.0019 21.3 4.3 44 23-66 13-61 (65)
68 2m1l_A Cyclin-dependent kinase 34.8 79 0.0027 20.8 4.8 46 21-66 15-65 (69)
69 1d0q_A DNA primase; zinc-bindi 33.6 28 0.00097 24.5 2.8 29 141-169 64-92 (103)
70 3vj8_A Squalene synthase; farn 32.9 2.3E+02 0.008 24.2 12.0 104 69-178 132-244 (343)
71 3qd7_X Uncharacterized protein 27.4 53 0.0018 24.6 3.5 35 139-175 39-73 (137)
72 4akk_A Nitrate regulatory prot 26.2 58 0.002 28.9 4.1 55 120-174 345-400 (423)
73 3emu_A Leucine rich repeat and 25.4 49 0.0017 24.8 3.0 23 146-168 103-126 (161)
74 1xri_A AT1G05000; structural g 25.3 30 0.001 25.4 1.7 25 145-169 107-131 (151)
75 2ww9_B Protein transport prote 22.5 1.5E+02 0.0051 20.1 4.7 24 68-91 37-60 (80)
76 3mtu_A Tropomyosin alpha-1 cha 20.4 35 0.0012 22.9 1.1 19 198-217 57-75 (75)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=7e-72 Score=524.53 Aligned_cols=230 Identities=40% Similarity=0.692 Sum_probs=214.5
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||++++++||+|||+||.+|++++||+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+|
T Consensus 324 ~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~n 403 (554)
T 3g4d_A 324 NAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKAN 403 (554)
T ss_dssp HHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhc
Confidence 58999999999999999999999999999999999889999899999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE 161 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee 161 (233)
|.+|+|++++++++++++|+. +|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|||+|+|+
T Consensus 404 a~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEe 482 (554)
T 3g4d_A 404 ALPTCGYAMLAITSFVGMGDI-VTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQE 482 (554)
T ss_dssp HGGGSCHHHHHHHHHHTSCTT-SCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHH
T ss_pred cceeehHHHHHHHHHHhcCCC-CCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHH
Confidence 999999999999999999999 9999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 040645 162 AVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 233 (233)
Q Consensus 162 A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~ 233 (233)
|+++++++++++||+||+++++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++||++
T Consensus 483 A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 483 AYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAKGGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999998999999999999999999999999 99999965 999999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=5.6e-71 Score=518.05 Aligned_cols=230 Identities=37% Similarity=0.615 Sum_probs=218.5
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||++++++||||||+||.+|++++||+++++.++||+++++|++++|+++++||++||+|+++||+||+||||+|
T Consensus 320 ~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~n 399 (550)
T 3m00_A 320 DAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSN 399 (550)
T ss_dssp HHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 58999999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE 161 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee 161 (233)
|.+|+|++++++++++++ +. +|+++++|+.++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+
T Consensus 400 a~vSsg~~~l~~~~f~g~-~~-lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~vas~V~cYMke~GvSeEe 477 (550)
T 3m00_A 400 ALATTTYYLLATTSYLGM-KS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYGISTKE 477 (550)
T ss_dssp HTGGGSHHHHHHHHHHTC-TT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHTTCTTSHHHHHHHHHTCCHHH
T ss_pred ccccchHHHHHHHHHHcC-CC-CcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhcCCcccHHHHHHHhcCCCHHH
Confidence 999999999999998877 77 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 040645 162 AVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 233 (233)
Q Consensus 162 A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~ 233 (233)
|+++++++++++||+||+++++++++|++|+++++|+||++++||++++||||.|+. ||++|++||++||++
T Consensus 478 A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 478 AMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVLKPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999998999999999999999999999984499999975 999999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=2e-70 Score=515.10 Aligned_cols=229 Identities=27% Similarity=0.484 Sum_probs=220.5
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||++++++||+|||+||.+|++++||+++++.+++|.++++|++++|+++++||++||+|+++||+||+||||+|
T Consensus 322 ~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~n 401 (555)
T 3n0f_A 322 DAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGN 401 (555)
T ss_dssp HHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHh
Confidence 58999999999999999999999999999999998888877799999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE 161 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee 161 (233)
|.+|+|+++++++++++||+. +|+++++|+.++|+++++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+
T Consensus 402 a~vSsg~~~l~~~~~~~mg~~-lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~vas~V~cYMke~GvSeEe 480 (555)
T 3n0f_A 402 AWKSSSGPLQLIFAYFAVVQN-IKKEEIENLQKYHDIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEEL 480 (555)
T ss_dssp HHHHTSHHHHHHHHHHHHCSS-CCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHHTCCHHH
T ss_pred cccchhHHHHHHHHHHhcCCC-CCHHHHHhcccchHHHHHHHHHHHHhccchhhhhhhhcCCcchHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999998999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 040645 162 AVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 232 (233)
Q Consensus 162 A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~ 232 (233)
|+++++++++++||+||+++++++++|++|+++++|+||++++||+++ ||||.|+. ||++|++||++||+
T Consensus 481 A~~~i~~~Ie~~wK~lN~e~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 481 ATESVMNLIDETWKKMNKEKLGGSLFAKPFVETAINLARQSHCTYHNG-DAHTSPDELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHSCCC----CCHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHHHHHHHHHhcCCC
Confidence 999999999999999999999998999999999999999999999999 99999975 99999999999986
No 4
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.8e-66 Score=489.70 Aligned_cols=229 Identities=27% Similarity=0.494 Sum_probs=211.3
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||.+++++||+|||+||.+++++++|++.++.+.+++++++|++++|++++++|++||+|+++||+||+||||++
T Consensus 319 ~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~ 398 (549)
T 1n1b_A 319 DTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNI 398 (549)
T ss_dssp HHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHh
Confidence 58999999999999999999999999999999998888877799999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhh-hhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHH
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDN-FECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEE 160 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~-~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~e 160 (233)
|.+|+|++++++++++++|+. +|+++ ++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|||+|+|
T Consensus 399 ~~vS~g~~~l~~~~~~~~g~~-lt~e~~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~v~n~V~cyMke~g~s~e 477 (549)
T 1n1b_A 399 AKISVASPAIISPTYFTFANA-SHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQCYMKETNASEE 477 (549)
T ss_dssp HHHHTCHHHHHHHHHTTSTTC-CCCHHHHHHHHTTCHHHHHHHHHHHHHHHHC---------CCCCHHHHHHHHHCCCHH
T ss_pred cccchhHHHHHHHHHHHcCCC-CcHHHHHhhhcccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHHcCCCHH
Confidence 999999999999999999999 99999 9999899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 040645 161 EAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 232 (233)
Q Consensus 161 eA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~ 232 (233)
||+++++++++++||+||+++++++++|++|+++++|++|++++||+++ ||||.|+. ||++|++||++||+
T Consensus 478 eA~~~i~~~i~~~wk~ln~e~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~-Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 478 EAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIYLHG-DGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHHHTTTS-CCC----CHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHeeehheeCC-CCCCCCcHHHHHHHHHHhcCCCC
Confidence 9999999999999999999999998999999999999999999999999 99999975 99999999999996
No 5
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=7.2e-66 Score=485.55 Aligned_cols=229 Identities=28% Similarity=0.476 Sum_probs=223.2
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||.+++++||+|||+||.+++++++|++.++.+.|++++++|++++|++++++|++||+|+++||+||++|||+|
T Consensus 313 ~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~ 392 (543)
T 2ong_A 313 DLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLEN 392 (543)
T ss_dssp HHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhc
Confidence 58999999999999999999999999999999999888888799999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE 161 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee 161 (233)
|.+|+|++++++++++++|+. +|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+
T Consensus 393 ~~vS~g~~~l~~~~~~~~g~~-~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~E~~rG~~~n~V~cyMke~g~s~ee 471 (543)
T 2ong_A 393 SWQSISGPCMLTHIFFRVTDS-FTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEAE 471 (543)
T ss_dssp HHHHTCHHHHHHHHHHHHSSC-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSSHHHHHTSCCCCHHHHHHHHTCCCHHH
T ss_pred ccccchHHHHHHHHHHHcCCC-CCHHHHHHhcccHHHHHHHHHHHHHhcccchhhhccccCCccHHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh-cCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 040645 162 AVKELLLEVADSWKDINEEL-LNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 232 (233)
Q Consensus 162 A~~~i~~~i~~~~k~ln~e~-l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~ 232 (233)
|+++++++++++||+||+++ ++++++|++|+++++|+||+++++|+++ ||||.|+. +|++|++||++||+
T Consensus 472 A~~~i~~~ie~~wk~ln~e~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~-D~~t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 472 ARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNG-DGHGTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCSSCSSCHHHHHHHHHHHHHHHHHTSSC-STTSSSCTTHHHHHHHHHTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHeehhheeCC-CCCCCccHHHHHHHHHHhccCCC
Confidence 99999999999999999999 9988899999999999999999999999 99999965 99999999999996
No 6
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=1.5e-65 Score=497.17 Aligned_cols=229 Identities=22% Similarity=0.419 Sum_probs=213.8
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAK-ERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKS 80 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~ 80 (233)
+||+|||++++++||||||+||.+|++++||+++++.+ ||+ ++++|++++|++++++|++||+|+++||+||+||||+
T Consensus 524 ~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~~~~~~~~g~-~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~ 602 (764)
T 3p5p_A 524 EGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVNNDVVKVQGR-DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLK 602 (764)
T ss_dssp HHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 58999999999999999999999999999999988776 565 9999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcC-CCCH
Q 040645 81 VALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQH-GVSE 159 (233)
Q Consensus 81 ~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~ 159 (233)
||.+|+|++++++.+++++|+. +|+++++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+|+
T Consensus 603 na~vSsg~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSe 681 (764)
T 3p5p_A 603 TYAISVGLGPCTLQPILLMGEL-VKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATE 681 (764)
T ss_dssp HHHHHTCHHHHHHHHHHTSSSC-CCGGGHHHHSTTSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCH
T ss_pred hcchhchHHHHHHHHHHHcCCC-CcHHHHhhhhhhHHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCH
Confidence 9999999999999999999999 9999999976669999999999999999999999999999999999999999 7999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcC-CCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 040645 160 EEAVKELLLEVADSWKDINEELLN-PTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 233 (233)
Q Consensus 160 eeA~~~i~~~i~~~~k~ln~e~l~-~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~ 233 (233)
|+|+++++++|+++||+||+++++ ++++|++|+++++|++|++++||+++ ||||.|+. ||++|++||++||++
T Consensus 682 EeA~~~i~~~Ie~~wKeln~e~l~~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 682 EDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLRLCVQIFYKFI-DGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHTHHHHHHHSCC--------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999997 78899999999999999999999999 99999976 999999999999974
No 7
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.5e-65 Score=500.05 Aligned_cols=230 Identities=27% Similarity=0.511 Sum_probs=215.0
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||++++++||||||+||.+|++++||+++++.+++|.++++|++++|++++++|++||+|+++||+||+||||+|
T Consensus 583 ~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~n 662 (817)
T 3sdr_A 583 EAVRRWDLSFTENLPDYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKN 662 (817)
T ss_dssp HHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHcCchhhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHh
Confidence 58999999999999999999999999999999988777766699999999999999999999999999999999999999
Q ss_pred hhhhcchHH-HHHHHHHhcCCCCCChhhhhhhh--cchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcC-CC
Q 040645 82 ALRSIGFLP-VAVASFVDLGDFIATKDNFECIL--KNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQH-GV 157 (233)
Q Consensus 82 ~~~s~g~~~-~~~~~~~~~g~~~l~~e~~~~~~--~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~ 157 (233)
|.+|+|+++ ++.++++++|+. +|+++++|+. +.|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+
T Consensus 663 a~vS~g~~~ll~~~~~~~~g~~-lt~e~~e~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gv 741 (817)
T 3sdr_A 663 GITSIGQRILLLSGVLIMDGQL-LSQEALEKVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPEC 741 (817)
T ss_dssp HHHHTCHHHHHHHHHTTCTTCC-CCHHHHHTTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTS
T ss_pred ccccccccHHHHHHHHHHcCCC-CCHHHHhcccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCC
Confidence 999999999 888889999999 9999999975 456999999999999999999999999999999999999999 79
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccCC
Q 040645 158 SEEEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLAI 233 (233)
Q Consensus 158 s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~~ 233 (233)
|+|+|+++++++|+++||+||+++++++++|++|+++++|++|++++||+++ ||||.|+. ||++|++||++||++
T Consensus 742 S~EeA~~~i~~~Ie~~wKeln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 742 TEEEALDHIYSILEPAVKELTREFLKPDDVPFACKKMLFEETRVTMVIFKDG-DGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHHHHHHHHHHTCSC-CSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999988999999999999999999999999 99999965 999999999999985
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=5.6e-65 Score=494.29 Aligned_cols=227 Identities=27% Similarity=0.437 Sum_probs=215.2
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAK-ERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKS 80 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~ 80 (233)
+||+|||++++++||+|||+||.+|++++||+++++.+ +|+ ++++|++++|++++++|++||+|+++||+||+||||+
T Consensus 555 ~ai~RWD~~~~~~Lpeymk~~f~aL~~~~nei~~~~~~~~g~-~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~ 633 (785)
T 3s9v_A 555 ESVKRWDLSLVDQMPQQMKICFVGFYNTFNDIAKEGRERQGR-DVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIE 633 (785)
T ss_dssp HHHHHTSSSSGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTS-CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHcCchhhhcCChhHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 58999999999999999999999999999999988777 555 9999999999999999999999999999999999999
Q ss_pred hhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcC-CCCH
Q 040645 81 VALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQH-GVSE 159 (233)
Q Consensus 81 ~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~-g~s~ 159 (233)
||.+|+|++++++++++++|+. +|+++++|+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|| |+|+
T Consensus 634 na~vS~g~~~l~~~~~~~~G~~-lt~e~~e~~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSe 712 (785)
T 3s9v_A 634 NASVSIALGTVVLISALFTGEV-LTDEVLSKIDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISE 712 (785)
T ss_dssp HHHHHTCHHHHHHHHTTCSSSC-CCHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCH
T ss_pred hccccchHHHHHHHHHHHcCCC-CCHHHHhcccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCH
Confidence 9999999999999999999999 9999999976669999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh--HHHHHHHHcccccC
Q 040645 160 EEAVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM--MKRQVALLLTEPLA 232 (233)
Q Consensus 160 eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~--~k~~i~~l~~~pi~ 232 (233)
|+|+++++++|+++||+||+++++++ +|++|+++++|++|++++||+++ ||||.|+. ||++|++||++||.
T Consensus 713 EeA~~~i~~~Ie~~wKeln~e~l~~~-~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 713 EEALQHVYSVMENALEELNREFVNNK-IPDIYKRLVFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHHHHTCCC-C----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHhcCC-CCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999999988 99999999999999999999999 99999975 99999999999983
No 9
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=5.1e-65 Score=481.29 Aligned_cols=229 Identities=29% Similarity=0.484 Sum_probs=206.0
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
+||+|||.+++++||+|||+||.+++++++|+++++.+.+++++++|++++|++++++|++||+|+.+||+||+||||+|
T Consensus 340 ~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~ 419 (569)
T 2j5c_A 340 TAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKN 419 (569)
T ss_dssp HHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhc
Confidence 58999999999999999999999999999999999888888799999999999999999999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHH
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEE 161 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~ee 161 (233)
|.+|+|++++++++++++|+. +|+++++|+.++|+++++++.++||+|||+||++|+++|+++|+|.|||+|+|+|+|+
T Consensus 420 ~~vSsg~~~l~~~~~~~~g~~-lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~rG~v~s~V~cyMke~g~s~ee 498 (569)
T 2j5c_A 420 SWISIGGIPILSHLFFRLTDS-IEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNEKNASEEE 498 (569)
T ss_dssp HHHHTSCHHHHHHHHHHSCSS-CCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC----------CCHHHHC------CCHH
T ss_pred ccccchHHHHHHHHHHHcCCC-CCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhcccCCccHHHHHHHHHcCCCHHH
Confidence 999999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHhhhhhhhcccCCCCCCCchh-HHHHHHHHcccccC
Q 040645 162 AVKELLLEVADSWKDINEELLNPTTASLPTLQRVLYFARSGHFIYDDGHDRYTHSLM-MKRQVALLLTEPLA 232 (233)
Q Consensus 162 A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~-~k~~i~~l~~~pi~ 232 (233)
|+++++++++++||+||+++++ +++|++|+++++|+||+++++|+++.||||.|+. +|++|++||++||+
T Consensus 499 A~~~i~~~ie~~wk~ln~e~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 499 AREHVRSLIDQTWKMMNKEMMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLVNKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHHHHHHHHHhccCCC
Confidence 9999999999999999999999 8899999999999999999999876699999964 99999999999996
No 10
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=5.4e-38 Score=279.20 Aligned_cols=178 Identities=17% Similarity=0.114 Sum_probs=157.3
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIP-SFDEYKS 80 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iP-t~eEYl~ 80 (233)
++++||+.+ .+|++++.+|.++++++++++... +.....++++.|++++.++++||+|+.+|++| |++||++
T Consensus 99 ~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~ 171 (337)
T 1ps1_A 99 DQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGM----TPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLA 171 (337)
T ss_dssp HHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTS----CHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHH
T ss_pred HHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 468899865 589999999999999999998653 23567899999999999999999999999999 9999999
Q ss_pred hhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHH
Q 040645 81 VALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEE 160 (233)
Q Consensus 81 ~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~e 160 (233)
+|+.|+|+.++++++++++|.. +|++++++ +..++|.++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|
T Consensus 172 ~r~~s~g~~~~~~~~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~e 249 (337)
T 1ps1_A 172 MRRHTIGVQPTVDLAERAGRFE-VPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSKS 249 (337)
T ss_dssp HHHHHTCHHHHHHHHHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCHH
T ss_pred HcccccchhhHHHHHHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCHH
Confidence 9999999999999999999999 99988887 466799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q 040645 161 EAVKELLLEVADSWKDINEELLNPTTASLPT 191 (233)
Q Consensus 161 eA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~ 191 (233)
+|++++.++++++||+||++.- .+|..+
T Consensus 250 eA~~~v~~~i~~~~~~~~~~~~---~lp~~~ 277 (337)
T 1ps1_A 250 RSVSHMQNEVRARLEQYLLLES---CLPKVG 277 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---Hhhhhh
Confidence 9999999999999999999883 355544
No 11
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=3.9e-37 Score=269.21 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=151.8
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
++++||+.+ +.+|+|||.+|+++++++++++.... .+.++.|+.++++++ ||+|+.+|++||++||+++
T Consensus 92 ~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~--------~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~ 160 (300)
T 1di1_A 92 NRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDA--------ELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEY 160 (300)
T ss_dssp HHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHH
T ss_pred HHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhCh--------HHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHH
Confidence 467899876 57999999999999999999987762 356777999999997 8999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCC--------ccchhHHHhh
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGH--------IPSAVECYKN 153 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~--------~~n~V~~yM~ 153 (233)
|+.|+|++++++++++++|.. +|+++++. .++|.++++.++||+|||+||+||+++|+ ++|+|.|||+
T Consensus 161 r~~s~g~~~~~~~~~~~~g~~-l~~e~~~~---~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~ 236 (300)
T 1di1_A 161 REKDVGKALLSALMRFSMGLR-LSADELQD---MKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAE 236 (300)
T ss_dssp HHTCHHHHHHHHHHHHHHTCC-CCHHHHHT---THHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHH
T ss_pred HhhhccHHHHHHHHHHHcCCC-CCHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHH
Confidence 999999999999999999999 99999984 59999999999999999999999999999 7799999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 040645 154 QHGVSEEEAVKELLLEVADSWKDINEEL 181 (233)
Q Consensus 154 e~g~s~eeA~~~i~~~i~~~~k~ln~e~ 181 (233)
++|+|+|+|+++++++++++||++|+..
T Consensus 237 ~~g~s~eeA~~~~~~~i~~~~~~~~~~~ 264 (300)
T 1di1_A 237 ESKLGIPATKRVLWSMTREWETVHDEIV 264 (300)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865
No 12
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=8.9e-36 Score=270.21 Aligned_cols=160 Identities=13% Similarity=0.054 Sum_probs=151.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHH
Q 040645 15 LPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVA 94 (233)
Q Consensus 15 lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~ 94 (233)
+|++++.+|++++++.++++..+.+ ....+++++|+++++++++||+|+.+|++||++|||++|+.|+|+.+++++
T Consensus 152 ~p~~~~p~~~al~dl~~~~~~~~~~----~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l 227 (382)
T 3kb9_A 152 HLHHEDTLVAGFADSVRRLYAFLPA----TWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDL 227 (382)
T ss_dssp GTTCSSHHHHHHHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHH
Confidence 6899999999999999999765433 347899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 040645 95 SFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSW 174 (233)
Q Consensus 95 ~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~ 174 (233)
+++++|.. +|++++++ +..++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|+++++++++++|
T Consensus 228 ~~~~~g~~-l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i~~~~ 305 (382)
T 3kb9_A 228 LEPSSGCE-LPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRVEECI 305 (382)
T ss_dssp HHHHHTCC-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCC-CCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999 99999988 67789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 040645 175 KDINEE 180 (233)
Q Consensus 175 k~ln~e 180 (233)
|+||+.
T Consensus 306 k~~~~~ 311 (382)
T 3kb9_A 306 TEFLAV 311 (382)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999974
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=3.9e-35 Score=259.07 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=148.3
Q ss_pred ccccccCCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhh
Q 040645 2 VLTKKWDIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSV 81 (233)
Q Consensus 2 ~ai~RWD~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~ 81 (233)
++++||+.+ +.+|++||.+|.++++++++++... + .+.++.|+.++ ++++|++|+.+|++||++||+++
T Consensus 106 ~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~-~-------~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~ 174 (320)
T 3bny_A 106 EKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHD-R-------EMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEY 174 (320)
T ss_dssp HHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHH-H-------HHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHH
T ss_pred HHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhC-H-------HHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHH
Confidence 467899875 5789999999999999999998764 2 25566677777 59999999999999999999999
Q ss_pred hhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCC--------ccchhHHHhh
Q 040645 82 ALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGH--------IPSAVECYKN 153 (233)
Q Consensus 82 ~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~--------~~n~V~~yM~ 153 (233)
|+.|+|++++++++++++|.. +|+++++. .++|.++++.++||+|||+||+||+++|+ ++|+|.|||+
T Consensus 175 r~~s~g~~~~~~~~~~~~g~~-l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~ 250 (320)
T 3bny_A 175 RERDVGKELLAALMRFSMGLK-LSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQ 250 (320)
T ss_dssp HHTCHHHHHHHHHHHHHHTCC-CCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHH
T ss_pred hhhcccHHHHHHHHHHHcCCC-CCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHH
Confidence 999999999999999999999 99999984 69999999999999999999999999998 7899999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 040645 154 QHGVSEEEAVKELLLEVADSWKDINEEL 181 (233)
Q Consensus 154 e~g~s~eeA~~~i~~~i~~~~k~ln~e~ 181 (233)
++|+|+|+|++++++++++.|+++|+..
T Consensus 251 ~~g~s~eeA~~~~~~~i~~~~~~~~~l~ 278 (320)
T 3bny_A 251 EADVTAEAAKRVLFVMCREWELRHQLLV 278 (320)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999765
No 14
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=2.3e-30 Score=237.82 Aligned_cols=153 Identities=12% Similarity=0.087 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCC
Q 040645 22 IFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGD 101 (233)
Q Consensus 22 ~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~ 101 (233)
+-.+++++.+++.....+ ....++++.|++++++|++||+|+.+|++||++|||++|+.| |+.+++.++.+++|.
T Consensus 237 ~~~al~d~~~~l~~~a~~----~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~R~~s-g~~p~~~l~e~~~g~ 311 (433)
T 3v1v_A 237 PRRAYDSAMGYFVRAATP----SQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAMRQFN-NFRPCPTITDTVGGY 311 (433)
T ss_dssp HHHHHHHHHHHHHHHSCH----HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHS-SSTTTGGGHHHHHTC
T ss_pred HHHHHHHHHHHHHhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH-hHHHHHHHHHHHcCC
Confidence 467888999998755322 457899999999999999999999999999999999999999 777777778888999
Q ss_pred CCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcC-CccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 040645 102 FIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRG-HIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEE 180 (233)
Q Consensus 102 ~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G-~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~e 180 (233)
. +|++++++ +..++|.++++.++||+|||+||+||+++| +++|+|.|||+++|+|+|+|++++.++++++++++.+.
T Consensus 312 ~-lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke~g~S~eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 312 E-LPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAEREQLCERDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp C-CCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 99999988 567789999999999999999999999995 78899999999999999999999999999999988765
Q ss_pred h
Q 040645 181 L 181 (233)
Q Consensus 181 ~ 181 (233)
.
T Consensus 390 ~ 390 (433)
T 3v1v_A 390 A 390 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=99.93 E-value=6.4e-27 Score=225.25 Aligned_cols=177 Identities=7% Similarity=-0.009 Sum_probs=139.2
Q ss_pred ccccccCCC---------CcCC---CChh--HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHH
Q 040645 2 VLTKKWDIG---------LIDT---LPEY--MKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWL 67 (233)
Q Consensus 2 ~ai~RWD~~---------~~~~---lpe~--mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~ 67 (233)
+||+|||++ +++. +|+| ||+||.+||+|+||++.++.+++|.++++|++++|.++++++++|++ +
T Consensus 528 ~av~rwd~~~~~~~~~~~~~~~~~~~p~~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~ 606 (727)
T 3pya_A 528 DQFHEYIANARRSDHHFNDRNMRLDRPGSVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E 606 (727)
T ss_dssp HHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C
T ss_pred HHHHhcccccccccccccchhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c
Confidence 589999974 4433 3877 99999999999999998766666669999999999999999999997 2
Q ss_pred hCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccch
Q 040645 68 YKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSA 147 (233)
Q Consensus 68 ~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~ 147 (233)
+| +. .++.++... .|.. +++ ++.+ +.+..|.++++.++||+||+.+|++|+
T Consensus 607 --------~E----Ae--llv~~I~l~----sG~~-l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-------- 657 (727)
T 3pya_A 607 --------GE----GE--LMVKMIILM----KNND-LTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-------- 657 (727)
T ss_dssp --------CH----HH--HHHHHHHHH----SSSC-GGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH--------
T ss_pred --------cc----ee--eeeeeeecC----CCcc-hHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH--------
Confidence 33 21 333333332 2887 888 7776 678889999999999999999999977
Q ss_pred hHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHHHhhhhhhhcccCCCCCCCchhHHHHHHH
Q 040645 148 VECYKNQHGVSEEEAVKELLLEVADSWKDINEELLNPT--TASLPTLQRVLYFARSGHFIYDDGHDRYTHSLMMKRQVAL 225 (233)
Q Consensus 148 V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~e~l~~~--~~p~~~~~~~~n~~R~~~~~Y~~~~D~~t~~~~~k~~i~~ 225 (233)
.+++.+.|+..|++|++.+++++ .+|++| |+++|++.||.. ||++|+ |..+|.+
T Consensus 658 ---------------~~~~~~~IE~~mqEL~~lVl~~~~~~ip~~~-----tf~~V~ksFYy~---ay~~p~-i~~hI~k 713 (727)
T 3pya_A 658 ---------------KEKTIKSMEKEMGKMVELALSESDTFRDVSI-----TFLDVAKAFYYF---ALCGDH-LQTHISK 713 (727)
T ss_dssp ---------------HHHHHHHHHHHHHHHHHHHHSCCTTTHHHHH-----HHHHHHHHHHHH---HHHTTS-CHHHHHH
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHhccCCCCCCCcc-----cHHHHHHHHHhh---hcCCHH-HHHHHHH
Confidence 55889999999999999999864 799999 999999999985 799998 9999999
Q ss_pred HcccccC
Q 040645 226 LLTEPLA 232 (233)
Q Consensus 226 l~~~pi~ 232 (233)
+|++||-
T Consensus 714 Vl~~~~~ 720 (727)
T 3pya_A 714 VLFQKVG 720 (727)
T ss_dssp HHHSCCC
T ss_pred HHcCccc
Confidence 9999984
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.42 E-value=9.9e-13 Score=118.49 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCCh
Q 040645 27 LDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATK 106 (233)
Q Consensus 27 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~ 106 (233)
+..+.++=..+.+.-+......+.++|.+++.+++.|+.. .+..|+.++|...++.++|+.-.+.. +.++.. +.+
T Consensus 128 ~~al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~rR~~sG~~E~~~~--~~~P~~-~~~ 202 (374)
T 1yyq_A 128 WALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFLRRMNGLGHCVGA--SLWPKE-QFN 202 (374)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHHHHHHHCHHHHHH--TTCCTT-TCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHHHhhccHHHHHHH--hhcccc-ccc
Confidence 3444455444444455577889999999999999999873 77789999999998888887644332 112222 222
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhhCccchhhhhh-cCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 040645 107 DNFECILKNAKSVKATQTIVRFMDDIAGYKFEQK-RGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINEE 180 (233)
Q Consensus 107 e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~-~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~e 180 (233)
+... .+.+...++.+..++.|+|||.||.||.. .|+.+|.|..++.++|+|.++|++++..++..+..++.+.
T Consensus 203 e~~~-~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~~eAl~~v~~~~~~~~~r~~~~ 276 (374)
T 1yyq_A 203 ERSL-FLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISLHEALEKLTQDTLHSSKQMVAV 276 (374)
T ss_dssp TTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhc-chhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2111 12345677788889999999999999998 4999999999999999999999999999999999888653
No 17
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=94.76 E-value=0.64 Score=40.01 Aligned_cols=143 Identities=15% Similarity=0.052 Sum_probs=82.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKAT 122 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~~ 122 (233)
..+..+.++...++.+-..+..|... .||.++|++.-..-+|.....+...-+ ++. .+++..+. ...+.+..
T Consensus 127 ~~~~~~~~~~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~~~ga~lag--~~~~~~~~---l~~~g~~l 199 (295)
T 3ipi_A 127 KVIQDFGKAGMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISASIGAYTGG--AEEELAER---FSHFGNAL 199 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHH
Confidence 45566667777888888888888654 389999998776666655432221111 222 45554444 35678888
Q ss_pred HHHHHHhhCccchhhh-----hhcCCccchhHHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH-HHHHH
Q 040645 123 QTIVRFMDDIAGYKFE-----QKRGHIPSAVECYKNQHGV--SEEEAVKELLLEVADSWKDINEELLNPTTASL-PTLQR 194 (233)
Q Consensus 123 ~~i~rL~NDi~S~~~E-----~~~G~~~n~V~~yM~e~g~--s~eeA~~~i~~~i~~~~k~ln~e~l~~~~~p~-~~~~~ 194 (233)
+...-+.||+..+.-. ...|.. +...+|..+.+- ..+.|.+.+++.++++.+.+. .+|. +-++.
T Consensus 200 GlaFQI~DDilD~~~~~~gkd~~~gk~-Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~-------~lp~~~~~~~ 271 (295)
T 3ipi_A 200 GTAYQIVDDILEFLEVVEGKESKFTSE-TLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE-------TFRECPARDK 271 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHC-------C-CHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT-------TSCCSHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCcccCcc-cHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH-------hCCCchHHHH
Confidence 9999999999887543 233433 667677655421 156677777777777776664 2443 44455
Q ss_pred HHHHhhh
Q 040645 195 VLYFARS 201 (233)
Q Consensus 195 ~~n~~R~ 201 (233)
..++++.
T Consensus 272 L~~l~~~ 278 (295)
T 3ipi_A 272 LFQITDY 278 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 18
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=94.37 E-value=0.61 Score=41.28 Aligned_cols=104 Identities=15% Similarity=0.148 Sum_probs=69.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKAT 122 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~~ 122 (233)
..+..+.+.+..++.+-..+..|.... ||.++|++.-..-+|.....+...-+ ++ . .+++..+.+ ..+.+..
T Consensus 160 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~la-g-a~~~~~~~l---~~~g~~l 232 (360)
T 3lmd_A 160 DTVAHFAETFGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHA-G-AAPEHIDAL---KNFGAAV 232 (360)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-CCHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHHH
Confidence 456777888889999999999987665 99999998776666655433322211 22 2 455544443 5678888
Q ss_pred HHHHHHhhCccchhh-----------hhhcCCccchhHHHhhcC
Q 040645 123 QTIVRFMDDIAGYKF-----------EQKRGHIPSAVECYKNQH 155 (233)
Q Consensus 123 ~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 155 (233)
...+-+.||+..+.- +...|.. +...+|..++
T Consensus 233 G~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~-Tlp~l~al~~ 275 (360)
T 3lmd_A 233 GMIFQIVDDIIDIFSETHESGKTPGTDLREGVF-TLPVLYALRE 275 (360)
T ss_dssp HHHHHHHHHHHHHHC--------CCHHHHHTCC-CHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCChhhhCCCchhHHhcCCc-hHHHHHHHHc
Confidence 999999999987743 2334544 6666665444
No 19
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=92.51 E-value=4.5 Score=35.33 Aligned_cols=108 Identities=11% Similarity=-0.014 Sum_probs=68.7
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHH
Q 040645 41 RRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSV 119 (233)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~ 119 (233)
+....+..+.+....++.+-..+..|.. +..||.++|++.-..-+|.....+...-+ ++ . .+++..+. ...+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g-~~~~~~~~---l~~~g 209 (341)
T 3mzv_A 136 GNMRVMEILANASAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAATEVGGIIG-G-APEDQVQA---LFDYG 209 (341)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-CCHHHHHH---HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-C-CCHHHHHH---HHHHH
Confidence 3335667777888889999998888864 34689999998776666655432222111 22 2 45554444 35678
Q ss_pred HHHHHHHHHhhCccchhh-----------hhhcCCccchhHHHhhcC
Q 040645 120 KATQTIVRFMDDIAGYKF-----------EQKRGHIPSAVECYKNQH 155 (233)
Q Consensus 120 ~~~~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 155 (233)
+..+..+-+.||+..+.- +...|.. +...+|..+.
T Consensus 210 ~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~~ 255 (341)
T 3mzv_A 210 DALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKL-TMPVIKAVAL 255 (341)
T ss_dssp HHHHHHHHHHHHHHHC----------CCHHHHTTCC-CHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhccCChhhcCCCCCcccccCch-hHHHHHHHHh
Confidence 888999999999887743 2344554 6655665443
No 20
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=92.37 E-value=4.1 Score=35.44 Aligned_cols=90 Identities=14% Similarity=-0.049 Sum_probs=61.0
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHH
Q 040645 41 RRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSV 119 (233)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~ 119 (233)
+....+..+.+....++.+-..+..|.. ...||.++|++.-..-+|..+..+...-+ ++ . .+++..+. ...+.
T Consensus 130 ~~~~~~~~~~~~~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g-~~~~~~~~---l~~~g 203 (334)
T 3rmg_A 130 NNYEIIRLVSSLGQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSV-Q-VGEEEVAF---ARLLG 203 (334)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHT-T-CCHHHHHH---HHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHc-C-CCHHHHHH---HHHHH
Confidence 3335667778888899999988888864 34589999998877666665433322211 22 2 45554444 36788
Q ss_pred HHHHHHHHHhhCccchh
Q 040645 120 KATQTIVRFMDDIAGYK 136 (233)
Q Consensus 120 ~~~~~i~rL~NDi~S~~ 136 (233)
...+...-+.||+..+.
T Consensus 204 ~~lG~aFQi~DD~ld~~ 220 (334)
T 3rmg_A 204 EYIGICFQIKDDIFDYF 220 (334)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhccCC
Confidence 88999999999998875
No 21
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=92.02 E-value=3.1 Score=36.49 Aligned_cols=91 Identities=9% Similarity=-0.101 Sum_probs=61.0
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHH
Q 040645 41 RRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSV 119 (233)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~ 119 (233)
+....+..+.+....++.+-..+..|.. +..||.++|++.-..-+|.....+...-+ ++ . .+++..+.+ ..+.
T Consensus 148 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~la-g-~~~~~~~~l---~~~g 221 (345)
T 3oyr_A 148 NSMKALEILARASRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAASEAGAVSA-G-VDVAKSEAL---RDYG 221 (345)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-CCHHHHHHH---HHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHH
Confidence 3335667778888889999988888854 34589999998776666665433322211 22 2 455544443 6788
Q ss_pred HHHHHHHHHhhCccchhh
Q 040645 120 KATQTIVRFMDDIAGYKF 137 (233)
Q Consensus 120 ~~~~~i~rL~NDi~S~~~ 137 (233)
+..+...-+.||+..+.-
T Consensus 222 ~~lG~aFQi~DD~lD~~~ 239 (345)
T 3oyr_A 222 LNLGLAFQLADDALDYGG 239 (345)
T ss_dssp HHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 899999999999988753
No 22
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=91.48 E-value=1.6 Score=37.61 Aligned_cols=112 Identities=7% Similarity=0.014 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
..++.+-..+..|... .+|.++|++.-..-+|.....+...-+ ++ . .+++..+.+ .++....+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~la-g-~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIA-N-VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHH-T-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577777777777543 789999999876666655433222111 11 2 455544443 67888899999999999
Q ss_pred cchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 133 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
..+.-. ...|.. +...++- .+.|.+.+++.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~-T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKS-TYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------C-CHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 887532 222332 5554443 578899999999999988764
No 23
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=91.19 E-value=5.1 Score=34.07 Aligned_cols=121 Identities=12% Similarity=-0.020 Sum_probs=81.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHH--HhcCCCCCChhhhhhhhcchHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASF--VDLGDFIATKDNFECILKNAKSVKA 121 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~l~~e~~~~~~~~~~l~~~ 121 (233)
..+..+.+....++.+-..+..|......||.++|++.-..-+|.....+... ...| .+++ ...++...
T Consensus 134 ~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag---~~~~------~l~~~g~~ 204 (284)
T 2ftz_A 134 XIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG---XDHT------XMXLLGEX 204 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT---CCCH------HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC---CChh------HHHHHHHH
Confidence 35666777778899999999999876557899999997766665554322211 1122 2333 23567888
Q ss_pred HHHHHHHhhCccchhhh-hhcCC-------ccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 122 TQTIVRFMDDIAGYKFE-QKRGH-------IPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 122 ~~~i~rL~NDi~S~~~E-~~~G~-------~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
.+...-+.||+..+.-+ ...|+ -.+...+| ..+.|.+.+++.++++.+.+..
T Consensus 205 lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 264 (284)
T 2ftz_A 205 FGVAFQIYDDLXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIES 264 (284)
T ss_dssp HHHHHHHHHHHHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988643 23333 12333333 3688999999999999988865
No 24
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=91.12 E-value=1.3 Score=38.08 Aligned_cols=116 Identities=14% Similarity=0.010 Sum_probs=70.7
Q ss_pred HHHHHHH--HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHH--HhcCCCCCChhhhhhhhcchHHHHHH
Q 040645 47 SYAKQTM--QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASF--VDLGDFIATKDNFECILKNAKSVKAT 122 (233)
Q Consensus 47 ~~~~~~~--~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~l~~e~~~~~~~~~~l~~~~ 122 (233)
..+.++. ..++.+-..+..|...+..||.++|++.-..-+|.....+... ...| .+++ ....+.+..
T Consensus 138 ~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag---~~~~------~l~~~g~~l 208 (297)
T 3m0g_A 138 AALAQASGAEGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG---ADRG------PLTAYATAL 208 (297)
T ss_dssp HHHHHHHSTTTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT---CCCH------HHHHHHHHH
T ss_pred HHHHHHHhHhHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC---CCHH------HHHHHHHHH
Confidence 3344444 5578888888899866778999999987655555443222111 1112 2333 235678889
Q ss_pred HHHHHHhhCccchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 123 QTIVRFMDDIAGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 123 ~~i~rL~NDi~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
+...-+.||+..+.-+ ...|.. +...++ ..+.|.+.+++.++++.+.+.
T Consensus 209 G~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~ 268 (297)
T 3m0g_A 209 GLAFQIADDILDVEGNEEAAGKRLGKDAEAHKA-TFVSLL------GLAGAKSRAADLVAEAEAALA 268 (297)
T ss_dssp HHHHHHHTTCC---------------------C-CHHHHH------CSSHHHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887532 223332 555444 347788999999999987775
No 25
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=91.09 E-value=2.7 Score=36.20 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHH-HhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASF-VDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~-~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
..++.+-..+..|.. ..||.++|.+.-..-+|.....+... ..++. .+++..+.+ ..+.+..+...-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~~~~ga~lag--a~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFALIAGGVLAN--QTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 346677777777753 47899999987544444433222211 11222 455544443 67888889999999999
Q ss_pred cchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 133 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
..+.-+ ...|.. +...++ ..+.|.+.+++.++++.+.+..
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 279 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEK 279 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887432 233333 444444 4789999999999999988864
No 26
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=90.48 E-value=4 Score=35.49 Aligned_cols=111 Identities=9% Similarity=-0.001 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhc--CCCCCChhhhhhhhcchHHHHHHHHHHHHhhC
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDL--GDFIATKDNFECILKNAKSVKATQTIVRFMDD 131 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 131 (233)
..++.+-..+..|... .||.++|+..-..-+|.... .....+. +.. .+++..+. ..++.+..+...-+.||
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~-~a~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DD 230 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIR-ASVRLACLARPG-LPAEQFDR---LDHYAKCIGLAFQIQDD 230 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHH-HHHHHHHTTSTT-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHH-HHHHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 78999999876555554433 2222222 222 34444443 35678888999999999
Q ss_pred ccchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 132 IAGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 132 i~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
+..+.-+ ...|.. +.+.+| ..|.|.+.+++.++++.+.+.
T Consensus 231 iLD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~ 281 (324)
T 3ts7_A 231 ILDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESLA 281 (324)
T ss_dssp HHHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HHhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9877532 233433 555554 478999999999998886664
No 27
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=90.27 E-value=2.5 Score=36.93 Aligned_cols=112 Identities=13% Similarity=0.011 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
..++.+-..+..|... .+|.++|++.-..-+|.........-+ ++ . .+++..+.+ .++-+..+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~la-g-a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIA-G-SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHH-T-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHh-C-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5577888888888765 789999998877666655332222111 11 1 455544443 67888899999999999
Q ss_pred cchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 133 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
..+.-+ ...|.. +...+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGKG-TLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887532 223333 555444 2688999999999999987754
No 28
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=89.51 E-value=2.5 Score=36.33 Aligned_cols=111 Identities=11% Similarity=0.024 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhc--CCCCCChhhhhhhhcchHHHHHHHHHHHHhhC
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDL--GDFIATKDNFECILKNAKSVKATQTIVRFMDD 131 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~--g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 131 (233)
..++.+-..+..|. +..||.++|++.-..-+|.....+ ...+. +.. .+++..+. ..++.+..+...-+.||
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~-~~~~~~~~---l~~~g~~lG~aFQI~DD 230 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGE-KGRAMLPH---LDRYAEAVGLAFQVQDD 230 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTH-HHHTTHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 35677877788886 457899999988654455443222 22221 221 12232322 35678888999999999
Q ss_pred ccchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 132 IAGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 132 i~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
+..+.-+ ...|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 231 ilD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 281 (302)
T 3p8r_A 231 ILDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALE 281 (302)
T ss_dssp HHHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 9887532 233333 555544 368899999999999998775
No 29
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=89.30 E-value=3 Score=35.93 Aligned_cols=110 Identities=11% Similarity=-0.017 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHH-HhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccc
Q 040645 56 LIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASF-VDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAG 134 (233)
Q Consensus 56 ~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~-~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 134 (233)
++.+-..+..|... .||.++|...-..-+|.....+... ..++.. .+++..+.+ ..+.+..+...-+.||+..
T Consensus 154 ~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~-~~~~~~~~l---~~~g~~lGlaFQI~DDilD 227 (304)
T 3lsn_A 154 MVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEASVILGALASGR-AEKGELKAL---QTYAQAIGLAFQVQDDILD 227 (304)
T ss_dssp HHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-CCHHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHHHHHHHHcCC-CCHHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 67777777777543 4899999988554444443222211 112221 255554443 6688889999999999988
Q ss_pred hhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 135 YKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 135 ~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
+.-+ ...|.. +...+| ..+.|.+.+++.++++.+.+.
T Consensus 228 ~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 228 VESDTATLGKRQGADIARDKP-TYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHC------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCChHHhCCCcccHHhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 7542 222332 555544 468999999999999987765
No 30
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=88.48 E-value=11 Score=32.62 Aligned_cols=103 Identities=15% Similarity=0.077 Sum_probs=65.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh--cCCCCCChhhhhhhhcchHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD--LGDFIATKDNFECILKNAKSVKA 121 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~~~l~~~ 121 (233)
..+..+.+....++.+-+.+..|.. +..||.++|++.-..-+|.....+. ..+ ++. .+++..+.+ ..+.+.
T Consensus 143 ~~~~~~~~~~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~~-~~ga~lag--~~~~~~~~l---~~~g~~ 215 (334)
T 3pko_A 143 SLIQNHIDAMHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALSC-YQGAQLAG--APQSVIDRT---RDIGIA 215 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHHH-HHHHHHTT--CCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcC--CCHHHHHHH---HHHHHH
Confidence 3456667778888888887777753 3568999999876555555433222 222 222 455544443 567788
Q ss_pred HHHHHHHhhCccchhh-----------hhhcCCccchhHHHhhc
Q 040645 122 TQTIVRFMDDIAGYKF-----------EQKRGHIPSAVECYKNQ 154 (233)
Q Consensus 122 ~~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e 154 (233)
.+...-+.||+..+.- +...|.. +...+|..+
T Consensus 216 lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 216 IGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HHHHHHHHHHHHhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 8888889999877642 3455665 666666554
No 31
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=88.43 E-value=3.4 Score=36.00 Aligned_cols=105 Identities=11% Similarity=0.079 Sum_probs=68.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQ 123 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~ 123 (233)
..+..+-+....++.+-..+..|.... ..|.++|++.-..-+|.....+...-++--. .+++..+.+ ..+....+
T Consensus 137 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 211 (342)
T 1wy0_A 137 RVLEVIVKASNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT-DNEEYIKAL---SSWGRNVG 211 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 355667777888999999999997643 4599999998776666654433222111012 455544443 67888999
Q ss_pred HHHHHhhCccchhh-----------hhhcCCccchhHHHhhc
Q 040645 124 TIVRFMDDIAGYKF-----------EQKRGHIPSAVECYKNQ 154 (233)
Q Consensus 124 ~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e 154 (233)
...-+.||+..+.- +...|.. +...+|..+
T Consensus 212 ~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~-Tlp~i~al~ 252 (342)
T 1wy0_A 212 IAFQIWDDVLDLIADEKKLGKPVGSDIRKGKK-TLIVAHFFE 252 (342)
T ss_dssp HHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCC-CHHHHHHHH
T ss_pred HHHHHHHHHHhccCChhhhCCCchhHHhCCCC-cHHHHHHHH
Confidence 99999999988752 2233444 666666554
No 32
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=88.37 E-value=3.9 Score=35.40 Aligned_cols=111 Identities=12% Similarity=0.025 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh--cCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 55 ELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD--LGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 55 ~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
.++.+-..+..|. +..||.++|+..-..-+|.....+ ...+ ++.. .+++..+. ...+.+..+...-+.||+
T Consensus 152 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~-a~~~~~~~---l~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 152 GMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQ-VKPEQLAK---LDAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp THHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCC-CCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3667777777775 445899999987654444443222 2222 2232 34444443 356888899999999999
Q ss_pred cchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 133 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
..+.-+ ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 275 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANKA-TYPKLL------GLDGAKALVVRLHEQAIAQISE 275 (317)
T ss_dssp HHTC----------------CCC-CHHHHH------HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HhccCChHhhCCCcchHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 887432 233333 555554 4689999999999999988763
No 33
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=87.71 E-value=7.2 Score=33.60 Aligned_cols=110 Identities=10% Similarity=0.028 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHH-HhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCcc
Q 040645 55 ELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASF-VDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIA 133 (233)
Q Consensus 55 ~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~-~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~ 133 (233)
.++.+-..+..|. +..+|.++|...-..-+|.....+... ..++. .+++..+. ...+.+..+...-+.||+.
T Consensus 156 ~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~~ga~lag--a~~~~~~~---l~~~g~~lGlaFQI~DDiL 228 (309)
T 3pde_A 156 GMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAVQAGLILGQ--APEAQWPA---YLQFADAFGLAFQIYDDIL 228 (309)
T ss_dssp THHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCGGGHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 4667777777774 346899999987544444443322211 11222 45544443 3568888899999999998
Q ss_pred chhh-----------hhhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 134 GYKF-----------EQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 134 S~~~-----------E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
.+.- +...|.. +...+| ..+.|.+..+++++++.+.+.
T Consensus 229 D~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~ 277 (309)
T 3pde_A 229 DVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQ 277 (309)
T ss_dssp HHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 8742 2233333 444443 357888999999999998876
No 34
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=87.52 E-value=4.9 Score=35.31 Aligned_cols=89 Identities=12% Similarity=0.019 Sum_probs=59.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHh----------CCC-CCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhh
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLY----------KGY-IPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECI 112 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~----------~~~-iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~ 112 (233)
..+..+.+....++.+-..+..|.. .+. .||.++|++.-..-+|.....++..-++--. .+++..+.+
T Consensus 132 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l 210 (358)
T 4dhd_A 132 LFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAAKWGVLSVS-DDRGLAEAA 210 (358)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC-CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-CCHHHHHHH
Confidence 3567778888899999999999873 223 6799999987766666554332221111011 455544443
Q ss_pred hcchHHHHHHHHHHHHhhCccchh
Q 040645 113 LKNAKSVKATQTIVRFMDDIAGYK 136 (233)
Q Consensus 113 ~~~~~l~~~~~~i~rL~NDi~S~~ 136 (233)
..+.+..+...-+.||+..+.
T Consensus 211 ---~~~g~~lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 211 ---WNFGMAAGVAFQIIDDVLDIY 231 (358)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHhc
Confidence 567888889999999988774
No 35
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=87.25 E-value=5.7 Score=34.47 Aligned_cols=113 Identities=15% Similarity=0.019 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHH-hcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFV-DLGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~-~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
..++.+-..+..|... ..||.++|.+.-..-+|.....+...- .++ . .+++..+.+ .++.+..+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a~~~Ga~la-g-a~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKASIMSGAVLA-E-ASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3467777777777543 368999999875444444432222111 122 2 455544443 67888889999999999
Q ss_pred cchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 133 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
..+.-+ ...|.. +...+| ..+.|.+.+++.++++.+.+..
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~ 304 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSS 304 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 877432 233333 444444 4689999999999999988863
No 36
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=86.13 E-value=7.5 Score=33.17 Aligned_cols=112 Identities=13% Similarity=0.022 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhc-C-CCCCChhhhhhhhcchHHHHHHHHHHHHhhC
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDL-G-DFIATKDNFECILKNAKSVKATQTIVRFMDD 131 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~-g-~~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 131 (233)
..++.+-..+..|... .+|.++|++.-..-+|.....+. ..+. - -. .+++..+. ..++.+..+...-+.||
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~-~~ga~l~ag-~~~~~~~~---l~~~g~~lG~aFQi~DD 224 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAAV-RLGALSAGD-KGRRALPV---LDKYAESIGLAFQVQDD 224 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHHH-HHHHHTTTH-HHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHhCC-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567777777777543 78999999987655555533222 2221 1 11 34444333 35678889999999999
Q ss_pred ccchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 132 IAGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 132 i~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
+..+.-+ ...|.. +...+|- .+.|.+.+++.++++.+.+..
T Consensus 225 ~lD~~~~~~~~GK~~g~Dl~~gK~-T~p~l~~------l~~a~~~~~~~~~~A~~~L~~ 276 (299)
T 1rqj_A 225 ILDVVGDTATLGKRQGADQQLGKS-TYPALLG------LEQARKKARDLIDDARQSLKQ 276 (299)
T ss_dssp HHHHHSCHHHHSSCTTHHHHHTCC-CHHHHHC------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCCHHHhCCChhhHHHcCCC-cHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 9887532 223333 5554442 478899999999999988865
No 37
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=85.91 E-value=13 Score=32.23 Aligned_cols=89 Identities=12% Similarity=-0.026 Sum_probs=56.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQ 123 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~ 123 (233)
.++..+.+....++.+-..+..|... ..+|.++|++.-..-+|.....+...-++--. .+++..+.+ ..+.+..+
T Consensus 153 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 227 (348)
T 3apz_A 153 EVVALLATAVEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTG-QTAEVAVLA---FEYGRNLG 227 (348)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcC-cCHHHHHHH---HHHHHHHH
Confidence 45566667777788887777665432 35799999987665555554333222111112 455544433 56778888
Q ss_pred HHHHHhhCccchhh
Q 040645 124 TIVRFMDDIAGYKF 137 (233)
Q Consensus 124 ~i~rL~NDi~S~~~ 137 (233)
..+-+.||+..+.-
T Consensus 228 ~aFQi~DD~lD~~g 241 (348)
T 3apz_A 228 LAFQLIDDILDFTG 241 (348)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhccC
Confidence 99999999988753
No 38
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=85.69 E-value=11 Score=32.55 Aligned_cols=113 Identities=11% Similarity=0.057 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhc-CCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 54 QELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDL-GDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 54 ~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~-g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
..++.+-..+..|... ..||.++|...-..-+|.....+.....+ |.. .+++..+.+ ..+.+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~-a~~~~~~~l---~~~g~~lGlaFQI~DDi 232 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHE-VSEQIKSAL---RTYGKHIGLVFQMQDDY 232 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSS-CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3567777777777543 37899999987654444433322222222 321 244444443 56888899999999999
Q ss_pred cchhhh-----------hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFE-----------QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 133 ~S~~~E-----------~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
..+.-+ ...|.. +.+.+| ..+.|.+.+++.++++.+.+.
T Consensus 233 lD~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 282 (313)
T 3lom_A 233 LDLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSLR 282 (313)
T ss_dssp HHHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTTT
T ss_pred HhccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 887532 233333 444443 478999999999999887664
No 39
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=85.57 E-value=16 Score=31.08 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHH-hcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhC
Q 040645 53 MQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFV-DLGDFIATKDNFECILKNAKSVKATQTIVRFMDD 131 (233)
Q Consensus 53 ~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~-~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~ND 131 (233)
...++.+-..+..|. +..||.++|...-..-+|.....+...- .++ . .+++..+. ..++.+......-+.||
T Consensus 144 ~~~~~~GQ~lDl~~~--~~~~~~~~y~~i~~~KTg~L~~~a~~~ga~la-g-a~~~~~~~---l~~~g~~lGlaFQI~DD 216 (291)
T 3npk_A 144 LNGMVIGQAIDCFFE--DKRLSLNELEFLHTHKTARLIAAALKMGCEIC-E-LNNEESNQ---IYKLGLKLGLIFQINDD 216 (291)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-CCHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc--CCCCCHHHHHHHHHcccHHHHHHHHHHHHHHc-C-CCHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 455677777677774 3578999999876555554433222111 122 2 45554443 36788889999999999
Q ss_pred ccchhhh-hhcCCcc-------chhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 132 IAGYKFE-QKRGHIP-------SAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 132 i~S~~~E-~~~G~~~-------n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
+..+.-. ...|+.. +.+.++ ..+.|.+..+++++++.+.+.
T Consensus 217 iLD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 217 IIDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 9887643 3334331 222222 367888889999999988876
No 40
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=84.39 E-value=10 Score=32.76 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=57.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHH-HhCCCCCCHHHHHhhhhhhcchH-HHHHH--HHHhcCCCCCChhhhhhhhcchHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKW-LYKGYIPSFDEYKSVALRSIGFL-PVAVA--SFVDLGDFIATKDNFECILKNAKSV 119 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w-~~~~~iPt~eEYl~~~~~s~g~~-~~~~~--~~~~~g~~~l~~e~~~~~~~~~~l~ 119 (233)
..+..+.+....++.+-..+..| ...+..||.++|++.-..-+|.. ...+. .....| .+++.. ...+.
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag---~~~~~~-----l~~~g 201 (330)
T 1wmw_A 130 EVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG---KTPPAA-----YEEGG 201 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT---CCCCHH-----HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC---CCHHHH-----HHHHH
Confidence 35666777888899999999999 65435689999998776666655 32222 112223 233322 35678
Q ss_pred HHHHHHHHHhhCccchh
Q 040645 120 KATQTIVRFMDDIAGYK 136 (233)
Q Consensus 120 ~~~~~i~rL~NDi~S~~ 136 (233)
...+...-+.||+..+.
T Consensus 202 ~~lG~aFQi~DD~ld~~ 218 (330)
T 1wmw_A 202 LRLGTAFQIVDDVLNLE 218 (330)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCccc
Confidence 88888999999988874
No 41
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=84.31 E-value=7 Score=33.68 Aligned_cols=114 Identities=10% Similarity=0.044 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhh-hhhhcchHHHHHHHHHHHHhh
Q 040645 53 MQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNF-ECILKNAKSVKATQTIVRFMD 130 (233)
Q Consensus 53 ~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~-~~~~~~~~l~~~~~~i~rL~N 130 (233)
...++.+-..+..|. +..||.++|+..-..-+|.....+...-+ ++. .+++.. +.+ ..+.+..+...-+.|
T Consensus 158 ~~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 158 IKGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASLIMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 345677777777775 56789999998765555544322221111 121 344444 443 568888999999999
Q ss_pred Cccchhhh-hhcCCccchhHHHhhcCCCC------HHHHHHHHHHHHHHHHHHHH
Q 040645 131 DIAGYKFE-QKRGHIPSAVECYKNQHGVS------EEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 131 Di~S~~~E-~~~G~~~n~V~~yM~e~g~s------~eeA~~~i~~~i~~~~k~ln 178 (233)
|+..+.-+ ..-|+.... .+...| .+.|.+..+++++++.+.+.
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~ 280 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLD 280 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99888643 334443221 233333 58889999999999988775
No 42
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=83.98 E-value=9.1 Score=33.51 Aligned_cols=86 Identities=16% Similarity=0.080 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHHHH
Q 040645 45 GISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKATQ 123 (233)
Q Consensus 45 ~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~~~ 123 (233)
.+..+-+....++.+-..+..|... .-||.++|++.-..-+|.....++..-+ ++ . .+++..+.+ ..+.+..+
T Consensus 144 ~~~~~~~~~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~~~ga~la-g-~~~~~~~~l---~~~g~~lG 217 (352)
T 3nf2_A 144 ATRRLTKASRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACASSIGAVLG-G-ADERTADTL---EKYGYHLG 217 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHHHHHHHHT-T-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHHHHHHHHc-C-CCHHHHHHH---HHHHHHHH
Confidence 4566777888899999988888654 3789999998776666665433322211 22 2 455554443 57888899
Q ss_pred HHHHHhhCccchh
Q 040645 124 TIVRFMDDIAGYK 136 (233)
Q Consensus 124 ~i~rL~NDi~S~~ 136 (233)
..+-+.||+..+-
T Consensus 218 ~aFQi~DD~ld~~ 230 (352)
T 3nf2_A 218 LAFQAVDDLLGIW 230 (352)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999998774
No 43
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=82.22 E-value=21 Score=29.96 Aligned_cols=128 Identities=13% Similarity=0.050 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhh
Q 040645 51 QTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMD 130 (233)
Q Consensus 51 ~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~N 130 (233)
+.+.+++.++. .+......+|++|+......+.|..-..++-.+ |.. -.++..+ .....+...-|.|
T Consensus 108 ~~~~~li~g~~---~Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~--g~~-~~~~~~~-------~A~~lG~AlQltN 174 (293)
T 3acx_A 108 QSFYNLIDTVY---KDQHFTMFETDAELFGYCYGVAGTVGEVLTPIL--SDH-ETHQTYD-------VARRLGESLQLIN 174 (293)
T ss_dssp HHHHHHHHHHH---HHTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHH--CSS-CCHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHh--CCC-CcHHHHH-------HHHHHHHHHHHHH
Confidence 34566666663 334445678999988888877776665555444 432 1122222 2233333333333
Q ss_pred CccchhhhhhcCCccchhHHHhhcCCCCHHH---------HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHH
Q 040645 131 DIAGYKFEQKRGHIPSAVECYKNQHGVSEEE---------AVKELLLEVADSWKDINEELLNPTTASLPTL 192 (233)
Q Consensus 131 Di~S~~~E~~~G~~~n~V~~yM~e~g~s~ee---------A~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~ 192 (233)
=+........+|-+ -.=.--|.++|++.++ ..+-+..++..+...+.+..---..+|....
T Consensus 175 ilRDv~eD~~~gR~-YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a~~~~~~lp~~~r 244 (293)
T 3acx_A 175 ILRDVGEDFENERI-YFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDVMDQIKVFSIEAQ 244 (293)
T ss_dssp HHHCHHHHHHTTCC-CSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTHH
T ss_pred HHHHHHHHHhCCcE-EeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHhHHhCCHHHH
Confidence 33333344556654 1112345678999876 2344556666666555543222234554433
No 44
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=76.66 E-value=3.8 Score=34.96 Aligned_cols=110 Identities=12% Similarity=0.034 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHHHHhhhhhhcchHHHHHHHH-HhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 55 ELIMLYFTEAKWLYKG-YIPSFDEYKSVALRSIGFLPVAVASF-VDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 55 ~~~~a~~~Ea~w~~~~-~iPt~eEYl~~~~~s~g~~~~~~~~~-~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
.++.+-..+..|...+ ..+|.++|...-..-+|.....+... ..++. .+++..+.+ .++....+...-+.||+
T Consensus 161 ~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 235 (293)
T 2j1p_A 161 GLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEASAVLGGIIGG--GSDEEIERL---RKFARCIGLLFQVVDDI 235 (293)
T ss_dssp THHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3566666666664321 24688999887544444433222111 11222 455544443 67888899999999999
Q ss_pred cchhhhhhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 040645 133 AGYKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDINE 179 (233)
Q Consensus 133 ~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln~ 179 (233)
..+..+. -.+...+| ..|.|.+.+++.++++.+.+..
T Consensus 236 LD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~~ 272 (293)
T 2j1p_A 236 LDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLLG 272 (293)
T ss_dssp HHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9886443 23555444 4688899999999988877653
No 45
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=76.22 E-value=17 Score=30.89 Aligned_cols=87 Identities=16% Similarity=0.025 Sum_probs=58.5
Q ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHH--HhcCCCCCChhhhhhhhcchHH
Q 040645 41 RRSYGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASF--VDLGDFIATKDNFECILKNAKS 118 (233)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~--~~~g~~~l~~e~~~~~~~~~~l 118 (233)
+....+..+-+....++.+-..+..|.... ||.++|++.-..-+|.....+... ...|. ++ +. ...+
T Consensus 124 ~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~--~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~---~~---~~---l~~~ 192 (299)
T 1v4e_A 124 GNNKLRRAFLNVIGKMSEAELIEQLSRYKP--ITKEEYLRIVEGKSGALFGLALQLPALLEGE---LG---ED---LYNL 192 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTTSC--CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTC---CC---HH---HHHH
T ss_pred ChHHHHHHHHHHHHHHhhhHHHHHHccCCC--CCHHHHHHHHHhccHHHHHHHHHHHHHHcCC---CH---HH---HHHH
Confidence 333566777888899999999999997655 999999987776666553322211 12232 22 22 2457
Q ss_pred HHHHHHHHHHhhCccchhhh
Q 040645 119 VKATQTIVRFMDDIAGYKFE 138 (233)
Q Consensus 119 ~~~~~~i~rL~NDi~S~~~E 138 (233)
....+...-+.||+..+.-+
T Consensus 193 g~~lG~aFQi~DD~lD~~~d 212 (299)
T 1v4e_A 193 GVTIGTIYQMFDDIMDFAGM 212 (299)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccCc
Confidence 77888888888888877543
No 46
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=75.75 E-value=34 Score=30.04 Aligned_cols=106 Identities=12% Similarity=-0.020 Sum_probs=68.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHhhhhhhcchH-HH--HHHHHHhcCCCCCChhhhhhhhcch
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGY----IPSFDEYKSVALRSIGFL-PV--AVASFVDLGDFIATKDNFECILKNA 116 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~----iPt~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~~l~~e~~~~~~~~~ 116 (233)
..+..+.+....++.+-..+..|...+. .+|+++|+..-..-+|.. .. +.+..+ ++.. .+++..+.+ .
T Consensus 176 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~-lag~-a~~~~~~~l---~ 250 (374)
T 2qis_A 176 NLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMY-MAGI-DGEKEHANA---K 250 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHH-HTTC-CCHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHH-HcCC-CcHHHHHHH---H
Confidence 3566677788888999999999876554 389999998877666665 22 222222 2332 344544443 6
Q ss_pred HHHHHHHHHHHHhhCccchhhh----------hhcCCccchhHHHhhcC
Q 040645 117 KSVKATQTIVRFMDDIAGYKFE----------QKRGHIPSAVECYKNQH 155 (233)
Q Consensus 117 ~l~~~~~~i~rL~NDi~S~~~E----------~~~G~~~n~V~~yM~e~ 155 (233)
.+....+..+-+.||+..+.-. ...|.. +.+.++-.+.
T Consensus 251 ~~g~~lG~aFQI~DDiLD~~gd~~~~GK~g~Dl~~gK~-T~p~l~al~~ 298 (374)
T 2qis_A 251 KILLEMGEFFQIQDDYLDLFGDPSVTGKIGTDIQDNKC-SWLVVQCLQR 298 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHCSCCCTTTTTCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCChhhcCCchhHHHcCCc-cHHHHHHHHh
Confidence 7888999999999999887532 233443 6665555443
No 47
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=75.36 E-value=33 Score=30.16 Aligned_cols=105 Identities=5% Similarity=-0.093 Sum_probs=65.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCH-HHHHhhhhhhcchH-HH--HHHHHHhcCCCCCChhh--hhhhhcchH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSF-DEYKSVALRSIGFL-PV--AVASFVDLGDFIATKDN--FECILKNAK 117 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~-eEYl~~~~~s~g~~-~~--~~~~~~~~g~~~l~~e~--~~~~~~~~~ 117 (233)
..+..+.+....++.+-..+..|...+..+++ ++|++.-..-+|.. .. +.+.....| .+++. .+. ...
T Consensus 168 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~y~~ii~~KTa~Lsf~~~~~lGa~lag---~~~~~~~~~~---l~~ 241 (368)
T 2her_A 168 KIQKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSE---IQVSSAQLNL---IEA 241 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSC---CCCCCSSTTT---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHccchHHHHHHHHHHHHHHcC---CChhHHHHHH---HHH
Confidence 35566777788888888888888766634455 99998766666555 21 222222233 23332 333 367
Q ss_pred HHHHHHHHHHHhhCccchh------hhhhcCCccchhHHHhhcC
Q 040645 118 SVKATQTIVRFMDDIAGYK------FEQKRGHIPSAVECYKNQH 155 (233)
Q Consensus 118 l~~~~~~i~rL~NDi~S~~------~E~~~G~~~n~V~~yM~e~ 155 (233)
+....+...-+.||+..+- .+...|.. +...++..+.
T Consensus 242 ~g~~lG~aFQI~DD~LD~~~~GK~g~Dl~egK~-T~pvi~al~~ 284 (368)
T 2her_A 242 ILYKLGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCSSSCTTTTTCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCChHhCCcc-cHHHHHHHHh
Confidence 8888999999999998875 23344443 5555555544
No 48
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=74.78 E-value=23 Score=30.07 Aligned_cols=85 Identities=16% Similarity=0.121 Sum_probs=59.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQ 123 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~ 123 (233)
..+..+.+.+..++.+-..+..|......||.++|++.-..-+|.....+...-+.--. .++ ....+.+..+
T Consensus 111 ~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~~a~-~~~-------~l~~~g~~lG 182 (301)
T 2q80_A 111 DAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSD-YKE-------DLKPLLNTLG 182 (301)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCS-------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHCC-ChH-------HHHHHHHHHH
Confidence 45666788889999999999999877778999999998776666554333222221111 221 2356788889
Q ss_pred HHHHHhhCccchh
Q 040645 124 TIVRFMDDIAGYK 136 (233)
Q Consensus 124 ~i~rL~NDi~S~~ 136 (233)
...-+.||+..+.
T Consensus 183 ~aFQi~DD~ld~~ 195 (301)
T 2q80_A 183 LFFQIRDDYANLH 195 (301)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhc
Confidence 9999999988764
No 49
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=74.16 E-value=32 Score=30.11 Aligned_cols=89 Identities=13% Similarity=0.005 Sum_probs=60.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCC----CCCHHHHHhhhhhhcchH-H--HHHHHHHhcCCCCCChhhhhhhhcch
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGY----IPSFDEYKSVALRSIGFL-P--VAVASFVDLGDFIATKDNFECILKNA 116 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~----iPt~eEYl~~~~~s~g~~-~--~~~~~~~~~g~~~l~~e~~~~~~~~~ 116 (233)
..+..+.+....++.+-..+..|...+. .+|+++|+..-..-+|.. . .+.+..+..| . .+++..+. ..
T Consensus 169 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag-~-~~~~~~~~---l~ 243 (367)
T 1uby_A 169 HLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVG-I-DSKEEHEN---AK 243 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHT-C-CCHHHHHH---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcC-C-ccHHHHHH---HH
Confidence 3566677778888999999999976553 679999998877666655 2 1222222233 1 24444444 36
Q ss_pred HHHHHHHHHHHHhhCccchhh
Q 040645 117 KSVKATQTIVRFMDDIAGYKF 137 (233)
Q Consensus 117 ~l~~~~~~i~rL~NDi~S~~~ 137 (233)
.+....+...-+.||+..+.-
T Consensus 244 ~~g~~lG~aFQI~DD~LD~~g 264 (367)
T 1uby_A 244 AILLEMGEYFQIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 788899999999999988753
No 50
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=73.57 E-value=41 Score=28.81 Aligned_cols=101 Identities=9% Similarity=-0.098 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh--cCCCCCChhhhhhhhcchHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD--LGDFIATKDNFECILKNAKSVKA 121 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~~~l~~~ 121 (233)
..+..+.+....++.+-..+..|... .-||.++|++.-..-+|.....+. ..+ ++. .+ . .....+.+.
T Consensus 122 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag--~~---~---~~l~~~g~~ 191 (315)
T 3tc1_A 122 LIAQALSNAVLRLSRGEIEDVFVGEC-FNSDKQKYWRILEDKTAHFIEASL-KSMAILLN--KD---A---KIYADFGLN 191 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTS-CCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTT--SC---H---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHHH-HHHHHHcC--CC---H---HHHHHHHHH
Confidence 45566777788899999988888753 468999999876655555543222 222 222 23 1 223567888
Q ss_pred HHHHHHHhhCccchhh-----------hhhcCCccchhHHHhhcC
Q 040645 122 TQTIVRFMDDIAGYKF-----------EQKRGHIPSAVECYKNQH 155 (233)
Q Consensus 122 ~~~i~rL~NDi~S~~~-----------E~~~G~~~n~V~~yM~e~ 155 (233)
.+...-+.||+..+.- +...|.. +...+|..++
T Consensus 192 lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~-T~p~i~al~~ 235 (315)
T 3tc1_A 192 FGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKT-TLPYLLLYEK 235 (315)
T ss_dssp HHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCC-CHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccCCHHHhCCChhhHHHcCCh-hHHHHHHHHh
Confidence 8899999999887742 2233443 6666666554
No 51
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=72.34 E-value=15 Score=31.82 Aligned_cols=86 Identities=15% Similarity=0.097 Sum_probs=58.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHH
Q 040645 45 GISYAKQTMQELIMLYFTEAKWLYKG--YIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKA 121 (233)
Q Consensus 45 ~~~~~~~~~~~~~~a~~~Ea~w~~~~--~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~ 121 (233)
.+..+.+....++.+-..+..|.... ..||.++|++.-..-+|.....+...-+ ++. .+++ . .....+.+.
T Consensus 132 ~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~-~---~~l~~~g~~ 205 (340)
T 2e8v_A 132 LITIFNEELINLHRGQGLDIYWRDFLPEIIPTQEMYLNMVMNKTGGLFRLTLRLMEALSP--SSHH-G---HSLVPFINL 205 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHCC--C----------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHcC--CcHH-H---HHHHHHHHH
Confidence 55667778888999999999998765 6789999999877666654433322211 221 2221 2 234678899
Q ss_pred HHHHHHHhhCccchh
Q 040645 122 TQTIVRFMDDIAGYK 136 (233)
Q Consensus 122 ~~~i~rL~NDi~S~~ 136 (233)
.+..+-+.||+..+.
T Consensus 206 lG~aFQi~DD~ld~~ 220 (340)
T 2e8v_A 206 LGIIYQIRDDYLNLK 220 (340)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998775
No 52
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=71.37 E-value=34 Score=29.76 Aligned_cols=106 Identities=8% Similarity=-0.081 Sum_probs=67.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-----------hCCC----CCCHHHHHhhhhhhcchH-HH--HHHHHHhcCCCCCC
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWL-----------YKGY----IPSFDEYKSVALRSIGFL-PV--AVASFVDLGDFIAT 105 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~-----------~~~~----iPt~eEYl~~~~~s~g~~-~~--~~~~~~~~g~~~l~ 105 (233)
..+..+.+....++.+-..+..|. ..|. .+|.++|++.-..-+|.. .. +.+.....| . .+
T Consensus 151 ~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag-~-~~ 228 (362)
T 1yhl_A 151 DLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEVAQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSE-A-AA 228 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTSCCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-C-GG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcC-C-CC
Confidence 356667777888899998888887 3223 489999998877666655 22 122222223 1 23
Q ss_pred hhhhhhhhcchHHHHHHHHHHHHhhCccchhhh----------hhcCCccchhHHHhhcC
Q 040645 106 KDNFECILKNAKSVKATQTIVRFMDDIAGYKFE----------QKRGHIPSAVECYKNQH 155 (233)
Q Consensus 106 ~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E----------~~~G~~~n~V~~yM~e~ 155 (233)
++..+. ...+....+...-+.||+..+.-. ...|.. +...++-.++
T Consensus 229 ~~~~~~---l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~g~Dl~egK~-T~p~l~al~~ 284 (362)
T 1yhl_A 229 SVEMNL---VERVAHLIGEYFQVQDDVMDCFTPPEQLGKVGTDIEDAKC-SWLAVTFLGK 284 (362)
T ss_dssp GSCHHH---HHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCCCTTTTTCC-CHHHHHHHTT
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhccCChHHhCCChhhHhcCCc-hHHHHHHHHh
Confidence 333333 357888899999999999887532 233443 6666665554
No 53
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=71.12 E-value=21 Score=30.72 Aligned_cols=88 Identities=18% Similarity=0.128 Sum_probs=60.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQ 123 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~ 123 (233)
..+..+-+....++.+-..+..|... ..||.++|++.-..-+|.....+...-++--. .+++..+.+ ..+....+
T Consensus 130 ~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 204 (325)
T 3aqb_B 130 KFHQIFSKTILEVCFGEFDQMADRFN-YPVSFTAYLRRINRKTAILIEASCHLGALSSQ-LDEQSTYHI---KQFGHCIG 204 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTC-CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTT-CCHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC-CCCCHHHHHHHHHhhHHHHHHHHHHHHHHHcC-CCHHHHHHH---HHHHHHHH
Confidence 45666777788899999888888653 35899999998776666664333322222112 455544443 67888899
Q ss_pred HHHHHhhCccchh
Q 040645 124 TIVRFMDDIAGYK 136 (233)
Q Consensus 124 ~i~rL~NDi~S~~ 136 (233)
...-+.||+..+.
T Consensus 205 ~afQi~DD~ld~~ 217 (325)
T 3aqb_B 205 MSYQIIDDILDYT 217 (325)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcc
Confidence 9999999988875
No 54
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=70.43 E-value=8.1 Score=32.57 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh-cCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccc
Q 040645 56 LIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD-LGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAG 134 (233)
Q Consensus 56 ~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~-~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S 134 (233)
++.+-..+..|..+ .||.++|...-..-+|.....+...-+ ++. .+++..+.+ .++-+..+...-+.||+..
T Consensus 151 ~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~~lGailag--a~~~~~~~l---~~~G~~lG~aFQI~DD~~~ 223 (274)
T 3kra_B 151 MISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGAACGAILGG--AAEEEIQKL---RNFGLYQGTLRGMMEMKNS 223 (274)
T ss_dssp HHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTT--CCHHHHHHH---HHHHHHHHHHHHHHHHTTT
T ss_pred HHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHhhcc
Confidence 45666666666433 789999997655444444332222111 222 455544443 6788899999999999711
Q ss_pred hhhhhhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 040645 135 YKFEQKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWKDIN 178 (233)
Q Consensus 135 ~~~E~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k~ln 178 (233)
..|++.+.+.++.+.+-++|.
T Consensus 224 -----------------------~~~~~~~~~~~~~~~A~~~L~ 244 (274)
T 3kra_B 224 -----------------------HQLIDENIIGKLKELALEELG 244 (274)
T ss_dssp -----------------------SCCCCHHHHHHHHHHHHHHHT
T ss_pred -----------------------ccHHHHHHHHHHHHHHHHHHH
Confidence 125566667777777776664
No 55
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=64.30 E-value=28 Score=29.47 Aligned_cols=118 Identities=12% Similarity=-0.008 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHH
Q 040645 45 GISYAKQTMQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQT 124 (233)
Q Consensus 45 ~~~~~~~~~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~ 124 (233)
.+..+.+....++.+-..+..| .++|++.-..-+|.....+. ..+.-.. .+++..+. ...+-+..+.
T Consensus 136 ~~~~~~~~~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~-~~ga~la-~~~~~~~~---l~~~g~~lG~ 202 (289)
T 2azj_A 136 ALNTSIELWKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLST-VLSAYAS-KHYNTKQQ---MLDVGKYLGI 202 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHH-HHHHHHT-TCGGGHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHH-HHHHHHc-CCHHHHHH---HHHHHHHHHH
Confidence 4455556666666666554443 67888776655555533222 2221111 23343333 3567888899
Q ss_pred HHHHhhCccchhhh----hhcCCccchhHHHhhcCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 040645 125 IVRFMDDIAGYKFE----QKRGHIPSAVECYKNQHGVSEEEA-VKELLLEVADSWKDINE 179 (233)
Q Consensus 125 i~rL~NDi~S~~~E----~~~G~~~n~V~~yM~e~g~s~eeA-~~~i~~~i~~~~k~ln~ 179 (233)
..-+.||+..+.-+ ...|. .+...+| .+ ...++| ...+.+.++++.+.+..
T Consensus 203 aFQi~DDilD~~~~~K~dl~~gk-~Tlp~l~-~~--~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 203 IYQVIDDFVDYKTKKVEEIDGSA-KQLFKYY-RE--GKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHHHHHHHHTTSCTTTCCTTG-GGGHHHH-TT--TCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhhhcCCCChhhhcCc-ccHHHHH-Hc--CCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999998887532 22232 3666666 32 345777 55678888888877753
No 56
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=61.69 E-value=71 Score=26.76 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCc
Q 040645 53 MQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDI 132 (233)
Q Consensus 53 ~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi 132 (233)
+.+++.++.+.. .....+|++|+......+.|..-.+++..+ |.. +++.... ....+...-|.|=+
T Consensus 106 ~~~li~g~~~Dl---~~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~--~~~~~~~-------A~~lG~AlQltNil 171 (294)
T 4hd1_A 106 FLRLIEANRRDQ---RKHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL--DDERARL-------SDATCTALQVANHM 171 (294)
T ss_dssp HHHHHHHHHHHH---HCSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC--SHHHHHH-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---ccCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC--CHHHHHH-------HHHHHHHHHHHHHH
Confidence 445666664332 345578998888777766665544444333 432 2232222 22233333344433
Q ss_pred cchhhhhhcCCccchhHHHhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHH
Q 040645 133 AGYKFEQKRGHIPSAVECYKNQHGVSEEEA---------VKELLLEVADSWKDINEELLNPTTASLPTLQR 194 (233)
Q Consensus 133 ~S~~~E~~~G~~~n~V~~yM~e~g~s~eeA---------~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~ 194 (233)
.......++|-+ -.=.-.|.++|+|.++- ..-+..+++.+..-+.+..--...+|..+...
T Consensus 172 RDv~eD~~~gR~-YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~lp~~~r~~ 241 (294)
T 4hd1_A 172 QDIDRDLALGRI-YVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEGRRLESLVPPRLARQ 241 (294)
T ss_dssp HTHHHHHHTTCB-CSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSSCHHHHHH
T ss_pred HhchhhhccCce-eCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 333445566654 11123567889998762 22334444444433333222224578655433
No 57
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=60.57 E-value=16 Score=32.05 Aligned_cols=105 Identities=7% Similarity=-0.041 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCC-CHHHHHhhhhhhcchH---HHHHHHHHhcCCCCCChhhhhhhhcchHHHHH
Q 040645 46 ISYAKQTMQELIMLYFTEAKWLYKGYIP-SFDEYKSVALRSIGFL---PVAVASFVDLGDFIATKDNFECILKNAKSVKA 121 (233)
Q Consensus 46 ~~~~~~~~~~~~~a~~~Ea~w~~~~~iP-t~eEYl~~~~~s~g~~---~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~ 121 (233)
+..+.+....++.+-..+..|...+..+ |.++|++.-..=+|.. ..+.......|.. .+++..+.+ ..+...
T Consensus 170 ~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~y~~ii~~KTa~l~~~~~~~~g~~~ag~~-~~~~~~~~l---~~~g~~ 245 (368)
T 2q58_A 170 QKIYNESIFFTVLGQHLDLSYFDLSKADKISERYFSMVEMKTSRYTFYMPVFFGLTLSEIQ-VSSAQLNLI---EAILYK 245 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHHHHHHHHHHTHHHHTHHHHHHHHHHSCCC-CCCSSTTTH---HHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHhhhcccCCchHHHHHHHHHHHhccccchHHHHHHHHHhCcc-cchHHHHHH---HHHHHH
Confidence 3445555566677777777777666554 7888998654444433 2223333444544 555544443 568888
Q ss_pred HHHHHHHhhCccchhh------hhhcCCccchhHHHhhcC
Q 040645 122 TQTIVRFMDDIAGYKF------EQKRGHIPSAVECYKNQH 155 (233)
Q Consensus 122 ~~~i~rL~NDi~S~~~------E~~~G~~~n~V~~yM~e~ 155 (233)
.+..+-+.||+..+-. +...|.. +...++.-+.
T Consensus 246 lG~aFQI~DDiLD~~~gK~~g~Dl~egK~-T~p~i~al~~ 284 (368)
T 2q58_A 246 LGEFYQVHNDVSDYLFNDSNADDICRFKL-TWPLQKSFEI 284 (368)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCTTTSCCC-CHHHHSSTTT
T ss_pred HHHHHHHHHHHhhcccCCCCCchHhcCCc-HHHHHHHHHh
Confidence 9999999999987642 3444444 5554554443
No 58
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=54.00 E-value=12 Score=25.22 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 040645 155 HGVSEEEAVKELLLEVADSWKDI 177 (233)
Q Consensus 155 ~g~s~eeA~~~i~~~i~~~~k~l 177 (233)
||++.+||+..+.+.+++++...
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~ 28 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEF 28 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHh
Confidence 79999999999999999988644
No 59
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=51.92 E-value=64 Score=28.35 Aligned_cols=78 Identities=12% Similarity=0.016 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHhhhhhhcchHHHHHHHHHh--cCCCCCChhhhhhhhcchHHHHHHHHHHHHhh
Q 040645 53 MQELIMLYFTEAKWLYKGYIPSFDEYKSVALRSIGFLPVAVASFVD--LGDFIATKDNFECILKNAKSVKATQTIVRFMD 130 (233)
Q Consensus 53 ~~~~~~a~~~Ea~w~~~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~--~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~N 130 (233)
...++.+-..+..|...+ .||.++|++.-..-+|...+......+ ++. .+++..+. ...+.+..+..+-+.|
T Consensus 184 ~~~~~~GQ~lDl~~~~~~-~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~lag--a~~~~~~~---l~~~G~~lG~AFQI~D 257 (380)
T 3lk5_A 184 RTEVIGGQLLDIYLESHA-NESVELADSVNRFKTAAYTIARPLHLGASIAG--GSPQLIDA---LLHYGHDIGIAFQLRD 257 (380)
T ss_dssp HHHHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT--CCHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CCCHHHHHHHHHhhchHHHHHHHHHHHHHHcC--CCHHHHHH---HHHHHHHHHHHHHHHH
Confidence 346777888888887644 579999998766666655211111121 222 45554444 3678888999999999
Q ss_pred Cccchh
Q 040645 131 DIAGYK 136 (233)
Q Consensus 131 Di~S~~ 136 (233)
|+..+-
T Consensus 258 DiLd~~ 263 (380)
T 3lk5_A 258 DLLGVF 263 (380)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 988774
No 60
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=39.69 E-value=1.6e+02 Score=25.80 Aligned_cols=86 Identities=7% Similarity=0.018 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhC--------C-------CCCCHHHHHhhhhhhcchH-H--HHHHHHHhcCCCCCCh
Q 040645 45 GISYAKQTMQELIMLYFTEAKWLYK--------G-------YIPSFDEYKSVALRSIGFL-P--VAVASFVDLGDFIATK 106 (233)
Q Consensus 45 ~~~~~~~~~~~~~~a~~~Ea~w~~~--------~-------~iPt~eEYl~~~~~s~g~~-~--~~~~~~~~~g~~~l~~ 106 (233)
.+..+.+....++.+-..+..|..+ + ..+|+++|+..-..-+|.. . .+.+..+..| .++
T Consensus 180 ~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~lag---a~~ 256 (390)
T 3dyh_A 180 LLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPDVSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSE---ALP 256 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTTSCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT---CGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcC---CCh
Confidence 4555666677788888888877310 1 3589999998776666654 2 2222222223 233
Q ss_pred hh-hhhhhcchHHHHHHHHHHHHhhCccchh
Q 040645 107 DN-FECILKNAKSVKATQTIVRFMDDIAGYK 136 (233)
Q Consensus 107 e~-~~~~~~~~~l~~~~~~i~rL~NDi~S~~ 136 (233)
+. .+. ...+.+.....+-+.||+..+.
T Consensus 257 ~~~~~~---l~~~g~~lGlaFQI~DDiLD~~ 284 (390)
T 3dyh_A 257 TVDMGV---TEELAMLMGEYFQVQDDVMDCF 284 (390)
T ss_dssp GSCHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 32 232 3568888999999999998774
No 61
>1nh1_A Avirulence B protein; helix bundle, avirulence protein; 2.20A {Pseudomonas syringae} SCOP: e.45.1.1 PDB: 2nud_A 2nun_A*
Probab=38.72 E-value=53 Score=27.87 Aligned_cols=71 Identities=15% Similarity=0.304 Sum_probs=47.3
Q ss_pred ccccc-CCCCcCCCChhHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC---CCCCHHHH
Q 040645 3 LTKKW-DIGLIDTLPEYMKFIFKALLDIYREAEEELAKERRSYGISYAKQTMQELIMLYFTEAKWLYKG---YIPSFDEY 78 (233)
Q Consensus 3 ai~RW-D~~~~~~lpe~mk~~f~~l~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Ea~w~~~~---~iPt~eEY 78 (233)
.+-|| |.+.-+..|+.|+.| +.+|+....++..+.. |+ +.-|-+.|..- .+||.+. -=|+..+|
T Consensus 46 GvARWPD~~Nkd~tp~qmeYg-qSfy~~sR~aG~~IA~-G~---I~sF~eLW~~A-------~~WR~Sr~~~a~~~~~~F 113 (330)
T 1nh1_A 46 GAARWPDDSSKSNTPENRAYC-QSMYNSIRSAGDEISR-GG---ITSFEELWGRA-------TEWRLSKLQRGEPLYSAF 113 (330)
T ss_dssp TCCCCSSCCCCCCSHHHHHHH-HHHHHHHHHHHHHHHT-TS---CCSHHHHHHHH-------HHHHHHTSCTTCTTHHHH
T ss_pred eeeccCCccccccCHHHHHHH-HHHHHHHHHhcccccc-Cc---cccHHHHHHHH-------HHHHHhhhcccCcchHHh
Confidence 46799 556677899999887 5678888887776554 44 34556667643 4788776 44556666
Q ss_pred Hhhhhhh
Q 040645 79 KSVALRS 85 (233)
Q Consensus 79 l~~~~~s 85 (233)
.+-|...
T Consensus 114 a~~R~~n 120 (330)
T 1nh1_A 114 ASERTSD 120 (330)
T ss_dssp TSBCCTT
T ss_pred cCccCCC
Confidence 6555433
No 62
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=38.66 E-value=1.4e+02 Score=26.21 Aligned_cols=87 Identities=13% Similarity=0.140 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHH-H----Hh--------------CCC----CCCHHHHHhhhhhhcchH---HHHHHHHH
Q 040645 44 YGISYAKQTMQELIMLYFTEAK-W----LY--------------KGY----IPSFDEYKSVALRSIGFL---PVAVASFV 97 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~a~~~Ea~-w----~~--------------~~~----iPt~eEYl~~~~~s~g~~---~~~~~~~~ 97 (233)
..+..+.+....++.+-..+.. | +. +|. .||+++|+..-..-+|.. ..+.+...
T Consensus 178 ~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~ 257 (395)
T 2ihi_A 178 DVIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGML 257 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSCCCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhcccccccccccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 3566677777888888888873 3 11 344 589999998766666554 22222223
Q ss_pred hcCCCCCChhh--hhhhhcchHHHHHHHHHHHHhhCccchh
Q 040645 98 DLGDFIATKDN--FECILKNAKSVKATQTIVRFMDDIAGYK 136 (233)
Q Consensus 98 ~~g~~~l~~e~--~~~~~~~~~l~~~~~~i~rL~NDi~S~~ 136 (233)
..| .+++. .+. ...+....+...-+.||+..+.
T Consensus 258 lag---~~~~~~~~~~---l~~~g~~lG~aFQI~DD~LD~~ 292 (395)
T 2ihi_A 258 LAG---IAVDNLIYKK---IEDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp HTT---CCTTCTHHHH---HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HcC---CChhhHHHHH---HHHHHHHHHHHHHHHHHHHhhc
Confidence 333 23332 333 3568888999999999987764
No 63
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=38.63 E-value=30 Score=23.48 Aligned_cols=21 Identities=19% Similarity=0.283 Sum_probs=18.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 040645 155 HGVSEEEAVKELLLEVADSWK 175 (233)
Q Consensus 155 ~g~s~eeA~~~i~~~i~~~~k 175 (233)
||++.+||...+.+.++++..
T Consensus 10 hG~~~~eA~~~l~~fl~~a~~ 30 (83)
T 2zqe_A 10 RGLTVAEALLEVDQALEEARA 30 (83)
T ss_dssp TTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999988873
No 64
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=37.75 E-value=18 Score=25.92 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=20.5
Q ss_pred cchhHHHhhcCCCCHHHHHHHHHH
Q 040645 145 PSAVECYKNQHGVSEEEAVKELLL 168 (233)
Q Consensus 145 ~n~V~~yM~e~g~s~eeA~~~i~~ 168 (233)
.--|.+.|.|-|+|.++|++.+.+
T Consensus 66 ~edi~lv~~q~~vs~~~A~~aL~~ 89 (102)
T 1tr8_A 66 EDDIELVMNQTGASREDATRALQE 89 (102)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 456889999999999999988764
No 65
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=37.50 E-value=80 Score=27.73 Aligned_cols=88 Identities=11% Similarity=0.110 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCC-----------------------CCCCHHHHHhhhhhhcchHH---HHHHHHHh
Q 040645 45 GISYAKQTMQELIMLYFTEAKWLYKG-----------------------YIPSFDEYKSVALRSIGFLP---VAVASFVD 98 (233)
Q Consensus 45 ~~~~~~~~~~~~~~a~~~Ea~w~~~~-----------------------~iPt~eEYl~~~~~s~g~~~---~~~~~~~~ 98 (233)
.+.-+.+....++.+-..+..|.... ..+|+++|++.-..=+|... .+.+....
T Consensus 179 ~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ 258 (395)
T 3mav_A 179 VIATFRDATLKTIIGQHLDTNIFSDKYSDAHREIDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLL 258 (395)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CCCCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHhhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 34555566666777766666664321 23689999987665555442 22222333
Q ss_pred cCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchh
Q 040645 99 LGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYK 136 (233)
Q Consensus 99 ~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~ 136 (233)
.|-. .+++..+.+ ..+....+..+-+.||+..+-
T Consensus 259 ag~~-~d~~~~~~l---~~~g~~lG~aFQI~DDiLD~~ 292 (395)
T 3mav_A 259 AGIA-VDNLIYKKI---EDISMLMGEYFQIHDDYLDIF 292 (395)
T ss_dssp TTCC-TTCTHHHHH---HHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCc-chhHHHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3433 344444443 567788889999999988764
No 66
>2d9i_A NEDD4-binding protein 2; SMR domain, N4BP2, BCL-3 binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.68.8.1
Probab=36.79 E-value=29 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 040645 155 HGVSEEEAVKELLLEVADSWK 175 (233)
Q Consensus 155 ~g~s~eeA~~~i~~~i~~~~k 175 (233)
||++.+||+..+.+.++++..
T Consensus 14 HGl~v~eA~~~L~~~L~~~~~ 34 (96)
T 2d9i_A 14 HGLHVDEALEHLMRVLEKKTE 34 (96)
T ss_dssp TTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 699999999999999998864
No 67
>2kw6_A Cyclin-dependent kinase 2-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=36.69 E-value=57 Score=21.28 Aligned_cols=44 Identities=18% Similarity=0.278 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHh--cCcchHHHHHHHH---HHHHHHHHHHHHH
Q 040645 23 FKALLDIYREAEEELAKE--RRSYGISYAKQTM---QELIMLYFTEAKW 66 (233)
Q Consensus 23 f~~l~~~~~e~~~~~~~~--~~~~~~~~~~~~~---~~~~~a~~~Ea~w 66 (233)
|.-|+.+++|+++++..- |.....+.+++-. +.+++.++.|++-
T Consensus 13 Y~~LL~VIeEmgkdIrpTYaGsk~~~ERLkR~I~hAr~LVrECl~E~er 61 (65)
T 2kw6_A 13 YAELLAIIEELGKEIRPTYAGSKSAMERLKRGIIHARGLVRECLAETER 61 (65)
T ss_dssp HHHHHHHHHHHTTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhcccchhhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999877654 4435677777765 5688888888763
No 68
>2m1l_A Cyclin-dependent kinase 2-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Homo sapiens}
Probab=34.81 E-value=79 Score=20.83 Aligned_cols=46 Identities=15% Similarity=0.252 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHH---HHHHHHHHHHHHH
Q 040645 21 FIFKALLDIYREAEEELAKE--RRSYGISYAKQTM---QELIMLYFTEAKW 66 (233)
Q Consensus 21 ~~f~~l~~~~~e~~~~~~~~--~~~~~~~~~~~~~---~~~~~a~~~Ea~w 66 (233)
-=|..|+.+++|+++++..- |.....+++++-. +.+++.++.|++-
T Consensus 15 sKY~~LL~vIeEmgkdirPTyagsks~~ERLkRgI~hAr~LVRECl~e~er 65 (69)
T 2m1l_A 15 STYTDLLSVIEEMGKEIRPTYAGSKSAMERLKRGIIHARALVRECLAETER 65 (69)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcccccchhhcCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999877654 4335677777755 5588888888763
No 69
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=33.56 E-value=28 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=24.0
Q ss_pred cCCccchhHHHhhcCCCCHHHHHHHHHHH
Q 040645 141 RGHIPSAVECYKNQHGVSEEEAVKELLLE 169 (233)
Q Consensus 141 ~G~~~n~V~~yM~e~g~s~eeA~~~i~~~ 169 (233)
-|...|+|..+|+-.|+|-.||++.+.+.
T Consensus 64 cg~gGd~i~fv~~~~~~sf~eA~~~La~~ 92 (103)
T 1d0q_A 64 CGAGGNAFTFLMDIEGIPFVEAAKRLAAK 92 (103)
T ss_dssp TCCEECHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34456889999988899999999988764
No 70
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=32.88 E-value=2.3e+02 Score=24.21 Aligned_cols=104 Identities=12% Similarity=0.091 Sum_probs=59.5
Q ss_pred CCCCCCHHHHHhhhhhhcchHHHHHHHHHhcCCCCCChhhhhhhhcchHHHHHHHHHHHHhhCccchhhhhhcCCccchh
Q 040645 69 KGYIPSFDEYKSVALRSIGFLPVAVASFVDLGDFIATKDNFECILKNAKSVKATQTIVRFMDDIAGYKFEQKRGHIPSAV 148 (233)
Q Consensus 69 ~~~iPt~eEYl~~~~~s~g~~~~~~~~~~~~g~~~l~~e~~~~~~~~~~l~~~~~~i~rL~NDi~S~~~E~~~G~~~n~V 148 (233)
...++|++|+...-..+.|..-..++-.++.... -++ ... .........+...-+.|=+........+|-+ -.=
T Consensus 132 ~~~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~-~~~-~~~---~~~~~A~~lG~AlQltNilRDv~eD~~~gR~-YlP 205 (343)
T 3vj8_A 132 DKHVTSEQEWDKYCHYVAGLVGIGLSRLFSASEF-EDP-LVG---EDTERANSMGLFLQKTNIIRDYLEDQQGGRE-FWP 205 (343)
T ss_dssp GCCCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTS-SCH-HHH---HCHHHHHHHHHHHHHHHHHHTHHHHHHTTCC-CSC
T ss_pred cCCCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCC-ccc-hhh---hHHHHHHHHHHHHHHHHHHHHhHHHHhCCCe-eCC
Confidence 3677899998888877777766666655554332 111 111 1233445556656666655666666667754 111
Q ss_pred HHHhhcCCCCHH---------HHHHHHHHHHHHHHHHHH
Q 040645 149 ECYKNQHGVSEE---------EAVKELLLEVADSWKDIN 178 (233)
Q Consensus 149 ~~yM~e~g~s~e---------eA~~~i~~~i~~~~k~ln 178 (233)
.=.|.++|++.+ .+..-+..++..+..-+.
T Consensus 206 ~e~l~~~g~~~~dl~~~~~~~~~~~~l~~l~~~A~~~~~ 244 (343)
T 3vj8_A 206 QEVWSRYVKKLGDFAKPENIDLAVQCLNELITNALHHIP 244 (343)
T ss_dssp HHHHTTTCSSGGGGGSGGGHHHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHcCCCHHHHhcccCCHHHHHHHHHHHHHHHHHHH
Confidence 224667888765 344555666666665443
No 71
>3qd7_X Uncharacterized protein YDAL; alpha/beta/alpha fold, endonuclease, hydrolase; 2.30A {Escherichia coli}
Probab=27.37 E-value=53 Score=24.57 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=26.0
Q ss_pred hhcCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHHH
Q 040645 139 QKRGHIPSAVECYKNQHGVSEEEAVKELLLEVADSWK 175 (233)
Q Consensus 139 ~~~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~k 175 (233)
.++|+.. +..-+-=||++.+||...+.+.+.++..
T Consensus 39 Lr~G~~~--~~~~LDLHG~~~~EA~~~L~~fL~~a~~ 73 (137)
T 3qd7_X 39 LRSGKYP--QQASLNLLRQPVEECRKMVFSFIQQALA 73 (137)
T ss_dssp HHSCCCC--GGGEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCC--CCeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 6777752 2223334799999999999999998874
No 72
>4akk_A Nitrate regulatory protein; transcription; 2.14A {Klebsiella oxytoca}
Probab=26.24 E-value=58 Score=28.90 Aligned_cols=55 Identities=20% Similarity=0.202 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhCccchhhhhh-cCCccchhHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 040645 120 KATQTIVRFMDDIAGYKFEQK-RGHIPSAVECYKNQHGVSEEEAVKELLLEVADSW 174 (233)
Q Consensus 120 ~~~~~i~rL~NDi~S~~~E~~-~G~~~n~V~~yM~e~g~s~eeA~~~i~~~i~~~~ 174 (233)
.....+-+|-+.+...+...+ |.-+.-+..+.|..+|+|+++|.+.+++.--+.-
T Consensus 345 ~~~~~~~~l~~~~~~l~~~l~~r~~i~~Akg~lm~~~~~~e~~A~~~l~~~sm~~~ 400 (423)
T 4akk_A 345 QQAHELQQLSGQLASLKDALEERKLIEKAKSVLMTYQGMQEEQAWQALRKMAMDKN 400 (423)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhCcCHHHHHHHHHHHHHHcC
Confidence 344455566666666665433 3345677889999999999999999998765443
No 73
>3emu_A Leucine rich repeat and phosphatase domain containing protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.30A {Entamoeba histolytica}
Probab=25.37 E-value=49 Score=24.82 Aligned_cols=23 Identities=13% Similarity=0.015 Sum_probs=17.3
Q ss_pred chhHHH-hhcCCCCHHHHHHHHHH
Q 040645 146 SAVECY-KNQHGVSEEEAVKELLL 168 (233)
Q Consensus 146 n~V~~y-M~e~g~s~eeA~~~i~~ 168 (233)
..|.+| |+.+|+|.++|++.++.
T Consensus 103 ~vv~ayLm~~~~~s~~~A~~~v~~ 126 (161)
T 3emu_A 103 AIVIAFLMYYQRLSFINAFNKVQG 126 (161)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445444 56679999999998886
No 74
>1xri_A AT1G05000; structural genomics, protein structure initiative, CESG for eukaryotic structural genomics, phosphoprote phosphatase; 3.30A {Arabidopsis thaliana} SCOP: c.45.1.1 PDB: 2q47_A
Probab=25.32 E-value=30 Score=25.41 Aligned_cols=25 Identities=12% Similarity=0.054 Sum_probs=20.8
Q ss_pred cchhHHHhhcCCCCHHHHHHHHHHH
Q 040645 145 PSAVECYKNQHGVSEEEAVKELLLE 169 (233)
Q Consensus 145 ~n~V~~yM~e~g~s~eeA~~~i~~~ 169 (233)
+..+.|||...|+|.++|++.++..
T Consensus 107 g~~~a~~l~~~g~~~~~a~~~~~~~ 131 (151)
T 1xri_A 107 GCLVGCLRKLQKWCLTSIFDEYQRF 131 (151)
T ss_dssp HHHHHHHHHHTTBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 4667889998899999999887754
No 75
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=22.54 E-value=1.5e+02 Score=20.12 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=17.9
Q ss_pred hCCCCCCHHHHHhhhhhhcchHHH
Q 040645 68 YKGYIPSFDEYKSVALRSIGFLPV 91 (233)
Q Consensus 68 ~~~~iPt~eEYl~~~~~s~g~~~~ 91 (233)
..-..|+-+||.+.+..+.-+-.+
T Consensus 37 k~~~KPdr~Ef~~iak~t~iG~~i 60 (80)
T 2ww9_B 37 AKCKKPDLKEYTKIVKAVGIGFIA 60 (80)
T ss_dssp HSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHHH
Confidence 456789999999999876544443
No 76
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=20.45 E-value=35 Score=22.86 Aligned_cols=19 Identities=11% Similarity=0.251 Sum_probs=15.7
Q ss_pred HhhhhhhhcccCCCCCCCch
Q 040645 198 FARSGHFIYDDGHDRYTHSL 217 (233)
Q Consensus 198 ~~R~~~~~Y~~~~D~~t~~~ 217 (233)
..|+..++|..+ |||..|+
T Consensus 57 ~~~I~~ILYat~-~~f~~p~ 75 (75)
T 3mtu_A 57 LQRIVDILYATD-EGFVIPD 75 (75)
T ss_dssp HHHHHHHHHCBT-TBCSSCC
T ss_pred HHHHHHHHhccC-cCCCCCC
Confidence 457788999999 9998873
Done!