BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040646
         (509 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 54/116 (46%), Gaps = 10/116 (8%)

Query: 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRG 222
           + + R I G G       + +   EL     RG++ S   F    G L +  + Y I R 
Sbjct: 129 FVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188

Query: 223 SS--------WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI 270
                     WR ++    IP +L+ +L+ + V ESPRWL  +G++E+A  I++ I
Sbjct: 189 GDASWLNTDGWRYMFASECIPALLFLMLL-YTVPESPRWLMSRGKQEQAEGILRKI 243


>pdb|1DMT|A Chain A, Structure Of Human Neutral Endopeptidase Complexed With
           Phosphoramidon
 pdb|1R1H|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1I|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1R1J|A Chain A, Structural Analysis Of Neprilysin With Various Specific
           And Potent Inhibitors
 pdb|1Y8J|A Chain A, Crystal Structure Of Human Nep Complexed With An
           Imidazo[4,5- C]pyridine Inhibitor
 pdb|2QPJ|A Chain A, Human Nep Complexed With A Bifunctional NepDPP IV
           INHIBITOR
 pdb|2YB9|A Chain A, Crystal Structure Of Human Neutral Endopeptidase Complexed
           With A Heteroarylalanine Diacid
          Length = 696

 Score = 29.3 bits (64), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 427 CVRNSAISMVRQALVF-GGVFSPVLVAAGRQNNFLSYGIFGLVIG 470
            V N+  S  R  +VF  G+  P   +A +Q+N L+YG  G+VIG
Sbjct: 486 AVVNAFYSSGRNQIVFPAGILQPPFFSA-QQSNSLNYGGIGMVIG 529


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,334,027
Number of Sequences: 62578
Number of extensions: 494543
Number of successful extensions: 1124
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 3
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)