Query 040646
Match_columns 509
No_of_seqs 508 out of 2547
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 10:25:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040646.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040646hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00898 2A0119 cation transp 100.0 8.5E-50 1.8E-54 403.6 43.8 457 28-489 1-504 (505)
2 TIGR01299 synapt_SV2 synaptic 100.0 8.2E-44 1.8E-48 362.4 32.7 427 18-487 151-741 (742)
3 KOG0253 Synaptic vesicle trans 100.0 7.9E-42 1.7E-46 303.0 24.7 427 15-487 59-527 (528)
4 KOG0255 Synaptic vesicle trans 100.0 6.7E-40 1.5E-44 331.9 42.4 474 18-496 2-509 (521)
5 TIGR00887 2A0109 phosphate:H+ 100.0 1.2E-40 2.6E-45 335.3 31.1 422 29-490 9-499 (502)
6 KOG0569 Permease of the major 100.0 1.2E-39 2.7E-44 311.6 26.2 388 107-497 60-472 (485)
7 COG2271 UhpC Sugar phosphate p 100.0 2.4E-37 5.1E-42 282.3 27.1 403 17-476 14-430 (448)
8 PRK10642 proline/glycine betai 100.0 4.6E-36 1E-40 300.9 34.4 391 35-487 15-437 (490)
9 PRK10077 xylE D-xylose transpo 100.0 9.4E-37 2E-41 306.8 29.0 420 31-489 7-467 (479)
10 PRK09556 uhpT sugar phosphate 100.0 2.1E-35 4.6E-40 294.7 28.3 397 30-479 23-448 (467)
11 TIGR02332 HpaX 4-hydroxyphenyl 100.0 6.3E-35 1.4E-39 286.0 29.9 374 32-453 4-391 (412)
12 TIGR00903 2A0129 major facilit 100.0 1.7E-35 3.6E-40 284.0 24.8 354 85-480 7-365 (368)
13 PRK10406 alpha-ketoglutarate t 100.0 1.6E-34 3.5E-39 285.5 31.9 376 32-479 18-423 (432)
14 COG2814 AraJ Arabinose efflux 100.0 3.3E-34 7E-39 266.1 30.2 369 32-478 9-384 (394)
15 PRK12307 putative sialic acid 100.0 3.2E-34 7E-39 283.9 30.5 363 29-455 11-381 (426)
16 PRK11551 putative 3-hydroxyphe 100.0 5.2E-34 1.1E-38 280.6 31.5 351 31-454 10-367 (406)
17 PRK11663 regulatory protein Uh 100.0 6.4E-34 1.4E-38 281.3 32.2 392 31-477 18-421 (434)
18 KOG0254 Predicted transporter 100.0 1.7E-34 3.8E-39 290.5 27.8 385 108-496 90-500 (513)
19 TIGR00879 SP MFS transporter, 100.0 3.6E-34 7.8E-39 288.5 28.6 394 92-487 51-478 (481)
20 PRK09952 shikimate transporter 100.0 6.9E-33 1.5E-37 273.9 34.5 381 32-482 18-435 (438)
21 PRK03545 putative arabinose tr 100.0 5.5E-33 1.2E-37 271.4 31.6 341 92-479 32-379 (390)
22 PRK11273 glpT sn-glycerol-3-ph 100.0 6.8E-33 1.5E-37 275.5 32.2 410 12-480 9-435 (452)
23 KOG0252 Inorganic phosphate tr 100.0 2.3E-34 5E-39 263.8 12.3 425 30-493 35-511 (538)
24 TIGR00890 2A0111 Oxalate/Forma 100.0 7.1E-33 1.5E-37 270.0 23.2 342 92-471 26-373 (377)
25 PF00083 Sugar_tr: Sugar (and 100.0 7.4E-39 1.6E-43 319.4 -19.6 380 107-492 46-449 (451)
26 TIGR00895 2A0115 benzoate tran 100.0 1.3E-31 2.8E-36 263.2 31.7 379 30-453 11-396 (398)
27 TIGR00891 2A0112 putative sial 100.0 4.7E-32 1E-36 266.9 28.2 372 30-453 6-386 (405)
28 TIGR00894 2A0114euk Na(+)-depe 100.0 6.3E-32 1.4E-36 270.2 28.9 417 29-480 12-450 (465)
29 TIGR00893 2A0114 d-galactonate 100.0 5.2E-32 1.1E-36 265.8 24.9 365 92-476 17-395 (399)
30 PRK09705 cynX putative cyanate 100.0 1.8E-31 3.9E-36 260.3 27.6 347 91-486 31-388 (393)
31 PRK14995 methyl viologen resis 100.0 1.7E-31 3.7E-36 268.0 27.4 377 34-452 4-408 (495)
32 PLN00028 nitrate transmembrane 100.0 2.8E-31 6.1E-36 264.7 27.9 383 29-480 29-433 (476)
33 PRK15075 citrate-proton sympor 100.0 1.6E-30 3.4E-35 257.3 31.4 345 35-452 14-389 (434)
34 PRK10213 nepI ribonucleoside t 100.0 3.6E-30 7.8E-35 250.9 33.0 316 92-454 43-363 (394)
35 PRK03893 putative sialic acid 100.0 9.2E-31 2E-35 264.4 28.2 376 30-454 14-425 (496)
36 TIGR00892 2A0113 monocarboxyla 100.0 1.9E-31 4.1E-36 264.6 22.4 362 92-474 42-415 (455)
37 PRK05122 major facilitator sup 100.0 5.2E-30 1.1E-34 251.5 31.7 347 92-488 38-397 (399)
38 TIGR00711 efflux_EmrB drug res 100.0 1.3E-30 2.9E-35 262.8 25.0 378 36-453 2-406 (485)
39 PRK10091 MFS transport protein 100.0 9.8E-30 2.1E-34 247.5 30.2 336 92-474 26-370 (382)
40 PRK15402 multidrug efflux syst 100.0 2.1E-29 4.6E-34 247.6 32.7 324 92-454 36-367 (406)
41 PRK10504 putative transporter; 100.0 5.1E-30 1.1E-34 257.1 28.7 353 92-452 33-410 (471)
42 KOG2533 Permease of the major 100.0 2.2E-30 4.8E-35 251.8 24.7 367 33-452 42-425 (495)
43 TIGR00710 efflux_Bcr_CflA drug 100.0 1.9E-29 4E-34 246.7 31.3 339 91-469 27-373 (385)
44 PRK15034 nitrate/nitrite trans 100.0 2.7E-29 5.9E-34 242.1 31.3 344 92-481 57-455 (462)
45 TIGR00712 glpT glycerol-3-phos 100.0 1.3E-29 2.7E-34 251.2 29.1 397 32-483 23-437 (438)
46 PRK03699 putative transporter; 100.0 1.2E-29 2.6E-34 247.9 27.8 369 33-480 4-380 (394)
47 PF07690 MFS_1: Major Facilita 100.0 2.1E-30 4.6E-35 250.1 21.6 325 92-448 19-352 (352)
48 KOG2532 Permease of the major 100.0 2.7E-29 5.8E-34 244.0 28.7 360 96-479 65-446 (466)
49 TIGR00881 2A0104 phosphoglycer 100.0 9.6E-30 2.1E-34 248.1 23.4 342 92-453 18-368 (379)
50 PRK03633 putative MFS family t 100.0 1.4E-28 3E-33 239.5 31.1 331 92-473 29-365 (381)
51 TIGR00900 2A0121 H+ Antiporter 100.0 3.4E-29 7.4E-34 242.9 26.7 326 92-453 22-359 (365)
52 PRK10489 enterobactin exporter 100.0 2.5E-29 5.5E-34 247.9 26.0 361 92-493 40-413 (417)
53 KOG1330 Sugar transporter/spin 100.0 3.4E-31 7.3E-36 244.4 11.5 359 31-452 28-407 (493)
54 PRK11102 bicyclomycin/multidru 100.0 8.6E-29 1.9E-33 241.1 28.2 328 89-454 11-346 (377)
55 PRK12382 putative transporter; 100.0 4.4E-28 9.6E-33 237.2 31.6 336 92-477 38-386 (392)
56 PRK15403 multidrug efflux syst 100.0 3.4E-28 7.4E-33 238.4 30.4 343 89-470 36-387 (413)
57 TIGR00899 2A0120 sugar efflux 100.0 2.7E-28 6E-33 237.5 29.6 340 95-479 24-373 (375)
58 PRK10133 L-fucose transporter; 100.0 8.9E-28 1.9E-32 236.6 31.2 347 31-453 21-403 (438)
59 PRK11043 putative transporter; 100.0 1E-27 2.3E-32 235.3 31.5 318 92-453 29-353 (401)
60 PRK11652 emrD multidrug resist 100.0 1.2E-27 2.6E-32 234.3 31.6 323 92-456 31-359 (394)
61 TIGR00897 2A0118 polyol permea 100.0 1.1E-27 2.5E-32 234.6 30.1 350 92-479 36-400 (402)
62 PRK09874 drug efflux system pr 100.0 7.1E-28 1.5E-32 237.3 27.8 346 92-477 37-395 (408)
63 PRK10473 multidrug efflux syst 100.0 2.7E-27 5.9E-32 231.6 30.6 318 92-453 26-349 (392)
64 PRK11195 lysophospholipid tran 100.0 1.4E-27 3.1E-32 232.6 28.1 342 93-475 27-375 (393)
65 COG2223 NarK Nitrate/nitrite t 100.0 1.9E-27 4.2E-32 218.1 25.2 345 92-479 37-400 (417)
66 TIGR00883 2A0106 metabolite-pr 100.0 1.5E-27 3.2E-32 234.0 25.1 301 117-453 45-371 (394)
67 PRK11646 multidrug resistance 100.0 4.7E-27 1E-31 229.5 27.7 314 94-452 36-354 (400)
68 cd06174 MFS The Major Facilita 100.0 4.8E-27 1E-31 226.5 26.8 320 92-477 22-349 (352)
69 TIGR00886 2A0108 nitrite extru 100.0 1.8E-27 3.9E-32 231.0 23.2 323 92-444 24-366 (366)
70 PRK10054 putative transporter; 100.0 1.1E-26 2.5E-31 226.4 27.2 334 93-469 32-373 (395)
71 PRK11010 ampG muropeptide tran 100.0 2E-26 4.4E-31 230.1 29.0 350 92-481 35-404 (491)
72 TIGR00902 2A0127 phenyl propri 100.0 6.6E-26 1.4E-30 220.5 29.4 337 92-474 27-373 (382)
73 TIGR00885 fucP L-fucose:H+ sym 100.0 8.1E-26 1.8E-30 220.7 29.6 316 92-453 26-377 (410)
74 PRK15011 sugar efflux transpor 100.0 2.3E-25 4.9E-30 217.6 31.6 341 93-480 40-391 (393)
75 TIGR00896 CynX cyanate transpo 99.9 5E-26 1.1E-30 219.5 23.2 316 90-453 21-344 (355)
76 KOG2504 Monocarboxylate transp 99.9 1.9E-26 4.1E-31 227.0 18.7 379 92-480 69-476 (509)
77 TIGR00889 2A0110 nucleoside tr 99.9 6.3E-25 1.4E-29 215.4 27.4 350 92-485 26-408 (418)
78 TIGR00792 gph sugar (Glycoside 99.9 2.1E-24 4.5E-29 214.6 29.2 324 92-452 23-375 (437)
79 TIGR00901 2A0125 AmpG-related 99.9 3E-25 6.4E-30 214.3 22.5 312 91-441 10-355 (356)
80 PRK08633 2-acyl-glycerophospho 99.9 9.2E-25 2E-29 242.7 29.5 327 94-452 35-379 (1146)
81 PRK11128 putative 3-phenylprop 99.9 1.2E-24 2.7E-29 211.7 26.7 335 92-472 27-371 (382)
82 PRK06814 acylglycerophosphoeth 99.9 2.5E-24 5.5E-29 238.2 30.3 315 107-453 52-392 (1140)
83 TIGR00806 rfc RFC reduced fola 99.9 8.8E-25 1.9E-29 206.4 21.0 344 92-446 49-404 (511)
84 PRK11902 ampG muropeptide tran 99.9 9.8E-24 2.1E-28 206.9 29.5 345 92-480 22-390 (402)
85 PRK09528 lacY galactoside perm 99.9 3.4E-24 7.4E-29 211.5 25.4 349 94-477 36-400 (420)
86 PRK10207 dipeptide/tripeptide 99.9 1E-23 2.2E-28 209.5 26.0 374 94-477 40-473 (489)
87 TIGR00882 2A0105 oligosacchari 99.9 8E-23 1.7E-27 200.2 29.5 344 95-475 29-390 (396)
88 PTZ00207 hypothetical protein; 99.9 2.6E-23 5.7E-28 206.3 24.7 377 92-479 50-551 (591)
89 PF05977 MFS_3: Transmembrane 99.9 6.5E-23 1.4E-27 203.1 27.0 337 105-477 43-391 (524)
90 TIGR00924 yjdL_sub1_fam amino 99.9 4E-22 8.6E-27 198.3 27.5 371 99-476 43-464 (475)
91 TIGR00805 oat sodium-independe 99.9 2E-23 4.3E-28 213.2 18.2 279 91-386 55-415 (633)
92 KOG3764 Vesicular amine transp 99.9 1.4E-23 3E-28 189.9 13.7 332 105-477 104-451 (464)
93 COG0738 FucP Fucose permease [ 99.9 8.5E-22 1.8E-26 179.8 25.5 319 92-455 36-382 (422)
94 KOG2615 Permease of the major 99.9 1E-22 2.2E-27 183.2 18.5 324 105-452 66-409 (451)
95 TIGR02718 sider_RhtX_FptX side 99.9 4.2E-21 9.1E-26 187.6 30.0 341 92-473 24-384 (390)
96 PF06609 TRI12: Fungal trichot 99.9 2.3E-20 5E-25 184.1 29.9 351 92-451 67-461 (599)
97 TIGR01301 GPH_sucrose GPH fami 99.9 1.2E-19 2.6E-24 176.8 32.8 362 93-483 28-475 (477)
98 TIGR00788 fbt folate/biopterin 99.9 6.3E-21 1.4E-25 189.2 23.6 337 92-452 49-408 (468)
99 PF11700 ATG22: Vacuole efflux 99.9 2E-19 4.3E-24 176.5 33.5 352 105-484 68-472 (477)
100 PRK09584 tppB putative tripept 99.9 1.3E-20 2.8E-25 188.6 25.5 351 94-452 47-439 (500)
101 PRK09669 putative symporter Ya 99.9 2.2E-20 4.8E-25 185.5 26.6 320 94-452 35-383 (444)
102 COG2807 CynX Cyanate permease 99.9 3.2E-20 7E-25 166.9 22.2 316 90-453 33-355 (395)
103 PRK10429 melibiose:sodium symp 99.9 7E-19 1.5E-23 175.8 29.2 323 96-452 34-388 (473)
104 PF03825 Nuc_H_symport: Nucleo 99.8 1.9E-18 4.2E-23 166.5 29.3 320 93-452 26-359 (400)
105 PRK09848 glucuronide transport 99.8 4.5E-18 9.7E-23 169.3 29.6 319 94-452 34-383 (448)
106 PRK11462 putative transporter; 99.8 5E-18 1.1E-22 168.4 29.6 315 97-452 38-382 (460)
107 COG2211 MelB Na+/melibiose sym 99.8 2.2E-17 4.8E-22 157.3 32.4 320 98-452 42-391 (467)
108 KOG4686 Predicted sugar transp 99.8 2.4E-19 5.3E-24 154.7 16.6 352 93-480 68-443 (459)
109 PF13347 MFS_2: MFS/sugar tran 99.8 9.4E-19 2E-23 173.0 20.7 322 94-452 27-379 (428)
110 PRK15462 dipeptide/tripeptide 99.8 7.8E-17 1.7E-21 157.8 29.0 346 96-452 37-435 (493)
111 COG2270 Permeases of the major 99.8 5.2E-17 1.1E-21 149.8 25.7 345 105-482 56-431 (438)
112 PF01306 LacY_symp: LacY proto 99.8 5.3E-17 1.2E-21 153.3 23.8 353 94-484 33-405 (412)
113 TIGR01272 gluP glucose/galacto 99.7 2.1E-15 4.5E-20 141.5 24.2 258 156-453 5-286 (310)
114 KOG2563 Permease of the major 99.7 3.3E-16 7.2E-21 145.2 17.1 314 108-452 80-416 (480)
115 PF03209 PUCC: PUCC protein; 99.6 2.5E-12 5.3E-17 119.6 29.7 321 95-452 6-362 (403)
116 PRK10642 proline/glycine betai 99.6 9.5E-15 2.1E-19 146.9 12.5 170 96-271 278-458 (490)
117 TIGR00880 2_A_01_02 Multidrug 99.6 4.4E-15 9.4E-20 122.5 8.3 137 112-249 3-140 (141)
118 KOG2325 Predicted transporter/ 99.6 4.1E-14 8.8E-19 135.5 13.4 146 105-252 69-234 (488)
119 COG3104 PTR2 Dipeptide/tripept 99.5 6.8E-13 1.5E-17 125.7 20.5 368 99-476 56-483 (498)
120 PF03137 OATP: Organic Anion T 99.5 1.8E-15 3.9E-20 150.9 -0.1 354 87-453 21-510 (539)
121 KOG2816 Predicted transporter 99.5 1.8E-11 4E-16 119.1 26.7 306 115-452 70-387 (463)
122 PRK09528 lacY galactoside perm 99.5 1.1E-13 2.5E-18 136.6 10.6 144 107-251 262-407 (420)
123 PF03092 BT1: BT1 family; Int 99.4 6E-12 1.3E-16 123.5 18.9 366 92-483 13-416 (433)
124 TIGR00889 2A0110 nucleoside tr 99.4 5.3E-13 1.2E-17 131.2 7.5 142 108-250 252-405 (418)
125 TIGR01299 synapt_SV2 synaptic 99.4 1.4E-12 2.9E-17 134.4 9.0 140 109-251 597-737 (742)
126 KOG3626 Organic anion transpor 99.4 1.7E-11 3.7E-16 122.5 15.9 272 91-379 119-470 (735)
127 TIGR00890 2A0111 Oxalate/Forma 99.3 4.2E-12 9.1E-17 123.6 10.7 141 94-238 230-373 (377)
128 PRK15011 sugar efflux transpor 99.3 1.5E-11 3.2E-16 120.3 13.3 149 95-249 243-392 (393)
129 PF05631 DUF791: Protein of un 99.3 3.4E-10 7.3E-15 103.9 20.2 150 96-250 61-219 (354)
130 PRK10489 enterobactin exporter 99.3 2.3E-11 4.9E-16 120.2 13.6 156 92-251 246-403 (417)
131 PF01770 Folate_carrier: Reduc 99.3 3.3E-10 7.1E-15 106.9 20.0 337 99-442 35-387 (412)
132 PRK05122 major facilitator sup 99.3 4.9E-11 1.1E-15 117.1 15.0 135 109-244 251-386 (399)
133 PRK09874 drug efflux system pr 99.3 3.1E-11 6.7E-16 119.0 13.3 135 109-244 260-395 (408)
134 PRK11551 putative 3-hydroxyphe 99.3 1.9E-11 4E-16 120.4 11.2 143 92-238 243-387 (406)
135 TIGR00899 2A0120 sugar efflux 99.3 5.3E-11 1.2E-15 115.9 14.1 148 96-249 227-375 (375)
136 cd06174 MFS The Major Facilita 99.3 2.2E-11 4.8E-16 117.2 11.0 147 92-242 198-347 (352)
137 TIGR00902 2A0127 phenyl propri 99.3 8.4E-11 1.8E-15 114.6 14.2 141 93-239 229-371 (382)
138 TIGR00892 2A0113 monocarboxyla 99.2 3.1E-11 6.7E-16 120.2 10.3 145 93-240 265-414 (455)
139 PRK10054 putative transporter; 99.2 6.1E-10 1.3E-14 108.9 19.0 169 312-482 11-185 (395)
140 PRK03545 putative arabinose tr 99.2 1.5E-10 3.2E-15 113.2 14.6 148 94-247 231-380 (390)
141 PRK12382 putative transporter; 99.2 4.5E-11 9.8E-16 117.1 10.8 136 109-245 251-387 (392)
142 TIGR00900 2A0121 H+ Antiporter 99.2 5.3E-10 1.1E-14 108.3 17.5 162 316-477 7-176 (365)
143 TIGR00879 SP MFS transporter, 99.2 7.9E-11 1.7E-15 118.6 11.4 156 92-251 307-474 (481)
144 PRK10473 multidrug efflux syst 99.2 1.9E-09 4.1E-14 105.6 20.0 163 320-484 15-183 (392)
145 PRK11663 regulatory protein Uh 99.2 1E-09 2.2E-14 108.8 17.7 153 328-482 43-201 (434)
146 TIGR00710 efflux_Bcr_CflA drug 99.2 1.9E-09 4E-14 105.4 19.1 154 329-484 26-185 (385)
147 PRK11195 lysophospholipid tran 99.2 1.3E-09 2.8E-14 106.6 17.7 168 311-483 6-177 (393)
148 TIGR00897 2A0118 polyol permea 99.2 3.8E-10 8.2E-15 110.8 13.9 145 92-242 245-396 (402)
149 TIGR00883 2A0106 metabolite-pr 99.2 1E-10 2.2E-15 114.6 9.8 137 97-237 248-391 (394)
150 TIGR02332 HpaX 4-hydroxyphenyl 99.2 4E-09 8.8E-14 103.7 20.7 155 328-484 28-194 (412)
151 TIGR00891 2A0112 putative sial 99.2 1.8E-09 3.9E-14 106.2 18.1 121 330-452 34-157 (405)
152 PRK09556 uhpT sugar phosphate 99.1 1.9E-10 4.1E-15 115.2 10.9 142 95-240 285-442 (467)
153 PRK10077 xylE D-xylose transpo 99.1 3.9E-10 8.5E-15 113.7 13.1 156 92-251 294-461 (479)
154 TIGR00893 2A0114 d-galactonate 99.1 1.1E-09 2.4E-14 107.2 15.6 154 328-483 14-173 (399)
155 PRK03633 putative MFS family t 99.1 5.9E-10 1.3E-14 108.7 13.3 141 93-240 224-365 (381)
156 KOG3098 Uncharacterized conser 99.1 4.9E-08 1.1E-12 93.9 25.6 305 113-451 56-408 (461)
157 PF07690 MFS_1: Major Facilita 99.1 1.8E-09 4E-14 104.0 16.0 155 319-475 7-167 (352)
158 TIGR00792 gph sugar (Glycoside 99.1 2.8E-09 6.1E-14 106.1 17.7 117 108-225 258-383 (437)
159 PRK10213 nepI ribonucleoside t 99.1 8.2E-09 1.8E-13 100.9 20.4 150 331-482 43-198 (394)
160 PRK10091 MFS transport protein 99.1 6.1E-09 1.3E-13 101.6 19.3 163 319-483 14-182 (382)
161 TIGR00887 2A0109 phosphate:H+ 99.1 2.2E-09 4.7E-14 108.6 16.2 136 114-251 342-492 (502)
162 PRK11646 multidrug resistance 99.1 9.4E-09 2E-13 100.7 19.6 166 314-481 16-187 (400)
163 COG2271 UhpC Sugar phosphate p 99.1 1.9E-09 4.1E-14 100.2 13.6 152 328-481 49-208 (448)
164 TIGR00895 2A0115 benzoate tran 99.1 4E-09 8.7E-14 103.5 16.9 155 326-482 35-195 (398)
165 PF05977 MFS_3: Transmembrane 99.1 1.6E-09 3.5E-14 108.1 14.0 145 92-240 241-387 (524)
166 PRK11273 glpT sn-glycerol-3-ph 99.1 9.2E-09 2E-13 102.6 19.5 153 329-482 50-211 (452)
167 TIGR00712 glpT glycerol-3-phos 99.1 3.4E-09 7.4E-14 105.3 15.9 152 330-482 49-209 (438)
168 TIGR00882 2A0105 oligosacchari 99.1 2E-09 4.4E-14 105.5 13.7 135 108-243 255-391 (396)
169 PRK12307 putative sialic acid 99.1 5.3E-09 1.1E-13 103.7 16.4 128 324-453 34-164 (426)
170 PRK11102 bicyclomycin/multidru 99.1 8E-09 1.7E-13 100.6 17.3 150 331-482 14-169 (377)
171 PRK09705 cynX putative cyanate 99.0 1.1E-09 2.5E-14 107.0 11.2 153 93-251 229-385 (393)
172 PRK11128 putative 3-phenylprop 99.0 2.5E-09 5.4E-14 104.3 13.5 136 97-238 233-370 (382)
173 TIGR00898 2A0119 cation transp 99.0 4.2E-09 9.1E-14 106.9 15.5 148 332-482 113-266 (505)
174 PLN00028 nitrate transmembrane 99.0 9.2E-09 2E-13 103.1 17.6 147 331-480 59-219 (476)
175 PRK03893 putative sialic acid 99.0 1E-08 2.2E-13 103.9 18.2 125 327-453 39-166 (496)
176 PF02487 CLN3: CLN3 protein; 99.0 1.2E-07 2.6E-12 89.8 23.8 323 109-452 61-392 (402)
177 PRK09952 shikimate transporter 99.0 3.7E-09 8E-14 104.9 14.4 150 96-250 278-435 (438)
178 PRK10504 putative transporter; 99.0 1.4E-08 3.1E-13 102.0 18.7 152 322-475 24-180 (471)
179 TIGR00924 yjdL_sub1_fam amino 99.0 4.1E-09 9E-14 105.3 14.5 155 322-478 24-190 (475)
180 PRK15403 multidrug efflux syst 99.0 2.2E-08 4.7E-13 98.6 19.2 152 331-484 39-196 (413)
181 PRK15402 multidrug efflux syst 99.0 3E-08 6.6E-13 97.6 19.9 151 331-483 36-192 (406)
182 TIGR00711 efflux_EmrB drug res 99.0 1.1E-08 2.3E-13 103.4 16.5 159 322-482 16-180 (485)
183 TIGR00881 2A0104 phosphoglycer 99.0 1.2E-09 2.7E-14 106.2 9.4 152 328-481 15-173 (379)
184 PRK03699 putative transporter; 99.0 2.6E-08 5.7E-13 97.5 18.6 143 331-475 30-178 (394)
185 KOG3762 Predicted transporter 99.0 3.7E-09 8E-14 100.9 11.8 170 303-474 366-541 (618)
186 PRK11043 putative transporter; 99.0 4.5E-08 9.8E-13 96.2 20.0 149 332-482 30-183 (401)
187 PRK15462 dipeptide/tripeptide 99.0 1.1E-08 2.4E-13 100.8 15.4 146 330-476 31-185 (493)
188 PRK10406 alpha-ketoglutarate t 99.0 5.7E-09 1.2E-13 103.5 12.7 141 96-240 271-417 (432)
189 TIGR00894 2A0114euk Na(+)-depe 99.0 2.5E-08 5.5E-13 100.0 17.4 142 337-478 70-217 (465)
190 TIGR00880 2_A_01_02 Multidrug 99.0 3E-08 6.6E-13 81.3 14.9 126 350-477 8-135 (141)
191 TIGR00885 fucP L-fucose:H+ sym 99.0 6E-08 1.3E-12 95.2 19.2 127 326-452 21-151 (410)
192 PF11700 ATG22: Vacuole efflux 99.0 5.1E-09 1.1E-13 103.4 11.6 151 94-249 307-469 (477)
193 PRK14995 methyl viologen resis 99.0 5.4E-08 1.2E-12 98.2 19.3 157 324-482 22-185 (495)
194 PF01306 LacY_symp: LacY proto 98.9 3.4E-09 7.3E-14 100.8 9.6 145 105-250 257-403 (412)
195 PF06813 Nodulin-like: Nodulin 98.9 3.8E-09 8.2E-14 93.9 9.3 153 92-251 25-185 (250)
196 PRK11652 emrD multidrug resist 98.9 9.6E-08 2.1E-12 93.6 20.1 151 331-483 31-187 (394)
197 PRK11902 ampG muropeptide tran 98.9 9.7E-08 2.1E-12 93.8 20.1 165 319-483 10-185 (402)
198 PRK15075 citrate-proton sympor 98.9 5.5E-09 1.2E-13 103.7 11.1 130 93-226 262-398 (434)
199 PRK11010 ampG muropeptide tran 98.9 1.7E-07 3.7E-12 94.2 21.8 164 320-483 24-198 (491)
200 TIGR00903 2A0129 major facilit 98.9 6.9E-08 1.5E-12 93.1 18.1 152 329-483 12-169 (368)
201 PRK08633 2-acyl-glycerophospho 98.9 5.7E-09 1.2E-13 116.8 11.9 140 95-238 259-401 (1146)
202 KOG0253 Synaptic vesicle trans 98.9 1.1E-08 2.5E-13 92.9 11.1 128 118-248 392-519 (528)
203 KOG2615 Permease of the major 98.9 7.4E-09 1.6E-13 94.6 9.7 108 343-453 71-178 (451)
204 TIGR00886 2A0108 nitrite extru 98.9 9.4E-08 2E-12 92.7 18.0 119 331-451 24-146 (366)
205 TIGR02718 sider_RhtX_FptX side 98.9 1.2E-08 2.5E-13 99.9 11.1 142 94-239 233-383 (390)
206 KOG0569 Permease of the major 98.9 2.2E-08 4.7E-13 97.3 12.3 152 94-251 295-458 (485)
207 PRK15034 nitrate/nitrite trans 98.9 4.2E-07 9E-12 88.8 21.3 114 337-451 64-187 (462)
208 COG2814 AraJ Arabinose efflux 98.9 4.3E-08 9.4E-13 92.3 13.9 146 92-243 235-382 (394)
209 PTZ00207 hypothetical protein; 98.9 1.4E-07 3.1E-12 94.7 17.9 144 332-476 51-201 (591)
210 PRK10429 melibiose:sodium symp 98.8 2.2E-07 4.8E-12 93.2 19.2 113 108-221 267-392 (473)
211 TIGR00769 AAA ADP/ATP carrier 98.8 2.3E-05 5E-10 76.8 32.2 265 92-382 26-345 (472)
212 TIGR00901 2A0125 AmpG-related 98.8 2.6E-07 5.6E-12 89.2 18.1 155 327-482 7-181 (356)
213 COG2223 NarK Nitrate/nitrite t 98.8 7.6E-08 1.7E-12 89.8 13.1 144 95-243 245-397 (417)
214 PRK09584 tppB putative tripept 98.8 1.5E-07 3.3E-12 94.7 15.8 168 304-472 16-193 (500)
215 KOG0255 Synaptic vesicle trans 98.8 9.6E-08 2.1E-12 97.2 14.6 138 343-483 121-258 (521)
216 PRK10207 dipeptide/tripeptide 98.8 9.1E-08 2E-12 95.8 14.1 134 335-469 42-183 (489)
217 TIGR01272 gluP glucose/galacto 98.8 1.1E-07 2.5E-12 89.3 13.9 131 98-235 172-303 (310)
218 COG2270 Permeases of the major 98.8 1.5E-08 3.3E-13 94.5 7.7 150 96-250 280-431 (438)
219 PRK10133 L-fucose transporter; 98.8 3.6E-07 7.9E-12 90.5 18.0 128 325-452 43-174 (438)
220 TIGR00806 rfc RFC reduced fola 98.8 4.1E-07 8.8E-12 87.5 17.3 151 329-482 47-205 (511)
221 PRK09848 glucuronide transport 98.8 2.5E-07 5.5E-12 92.3 16.5 122 96-221 256-387 (448)
222 PRK06814 acylglycerophosphoeth 98.7 4.3E-08 9.4E-13 109.5 11.0 139 96-238 253-413 (1140)
223 TIGR01301 GPH_sucrose GPH fami 98.7 5.7E-07 1.2E-11 88.5 17.1 162 322-483 18-222 (477)
224 PF03825 Nuc_H_symport: Nucleo 98.7 1.4E-07 3.1E-12 91.3 12.6 142 108-250 244-398 (400)
225 TIGR00926 2A1704 Peptide:H+ sy 98.7 1.5E-06 3.3E-11 89.0 19.9 144 97-243 16-178 (654)
226 KOG2504 Monocarboxylate transp 98.7 2.4E-08 5.3E-13 99.2 6.2 152 92-248 321-476 (509)
227 TIGR00805 oat sodium-independe 98.7 8.7E-08 1.9E-12 98.8 10.4 123 330-452 55-229 (633)
228 COG2211 MelB Na+/melibiose sym 98.7 2.4E-06 5.3E-11 82.5 19.3 114 107-221 272-395 (467)
229 PF06963 FPN1: Ferroportin1 (F 98.7 1.3E-05 2.7E-10 77.7 24.0 321 115-450 46-411 (432)
230 TIGR00896 CynX cyanate transpo 98.7 1.1E-07 2.3E-12 91.9 10.0 127 93-224 221-350 (355)
231 KOG3764 Vesicular amine transp 98.6 1.4E-07 3.1E-12 86.9 9.5 131 348-480 114-247 (464)
232 PF13347 MFS_2: MFS/sugar tran 98.6 9.3E-07 2E-11 87.6 14.5 112 108-220 261-382 (428)
233 PF06609 TRI12: Fungal trichot 98.6 1.2E-06 2.6E-11 87.7 15.0 142 331-475 67-212 (599)
234 KOG3810 Micronutrient transpor 98.6 7.2E-07 1.6E-11 80.7 11.4 342 118-477 53-418 (433)
235 PRK09669 putative symporter Ya 98.6 2.6E-06 5.6E-11 84.9 16.5 115 109-224 266-390 (444)
236 COG0477 ProP Permeases of the 98.5 3.2E-07 7E-12 86.4 9.6 130 108-238 40-176 (338)
237 KOG1330 Sugar transporter/spin 98.5 6.4E-08 1.4E-12 91.2 4.0 138 344-483 72-213 (493)
238 KOG2532 Permease of the major 98.5 4E-06 8.7E-11 82.5 15.9 133 347-479 80-215 (466)
239 KOG2533 Permease of the major 98.5 1.3E-05 2.8E-10 79.3 18.3 141 342-484 83-232 (495)
240 KOG0254 Predicted transporter 98.5 3.4E-06 7.5E-11 85.5 14.9 138 343-482 92-232 (513)
241 COG3104 PTR2 Dipeptide/tripept 98.5 6.2E-07 1.4E-11 85.8 8.7 142 338-480 56-206 (498)
242 PF13000 Acatn: Acetyl-coenzym 98.4 3.5E-05 7.7E-10 73.9 19.8 270 171-448 128-458 (544)
243 KOG4686 Predicted sugar transp 98.4 1.4E-06 2.9E-11 76.7 9.6 139 94-238 290-434 (459)
244 KOG0252 Inorganic phosphate tr 98.4 9.2E-07 2E-11 83.3 8.7 128 119-251 360-501 (538)
245 KOG4332 Predicted sugar transp 98.4 1.2E-05 2.7E-10 70.2 13.9 88 94-186 62-149 (454)
246 PF03209 PUCC: PUCC protein; 98.4 1.5E-05 3.3E-10 74.9 15.6 146 92-240 232-391 (403)
247 TIGR00939 2a57 Equilibrative N 98.3 0.00038 8.2E-09 68.3 25.0 106 344-450 311-427 (437)
248 KOG0637 Sucrose transporter an 98.3 2.9E-06 6.4E-11 80.0 9.2 124 92-218 55-200 (498)
249 PRK11462 putative transporter; 98.3 5.5E-05 1.2E-09 75.5 18.4 107 109-216 265-380 (460)
250 PF06813 Nodulin-like: Nodulin 98.2 3.7E-05 8E-10 68.7 14.4 119 332-452 26-152 (250)
251 TIGR00788 fbt folate/biopterin 98.2 2.4E-06 5.3E-11 85.3 6.0 121 97-221 281-412 (468)
252 KOG3574 Acetyl-CoA transporter 98.1 0.00031 6.6E-09 64.9 18.1 291 124-450 80-424 (510)
253 PF06779 DUF1228: Protein of u 98.1 2.8E-06 6E-11 61.0 4.1 72 90-165 13-84 (85)
254 COG2807 CynX Cyanate permease 98.1 2.5E-05 5.5E-10 71.8 10.8 149 92-244 231-382 (395)
255 PF00083 Sugar_tr: Sugar (and 98.1 4.1E-08 8.8E-13 98.2 -8.2 154 92-251 276-440 (451)
256 PF03219 TLC: TLC ATP/ADP tran 98.1 0.015 3.3E-07 57.6 30.0 246 108-378 59-357 (491)
257 COG0738 FucP Fucose permease [ 98.1 0.00017 3.8E-09 67.4 15.1 123 330-452 35-161 (422)
258 COG3202 ATP/ADP translocase [E 98.1 0.0095 2.1E-07 57.6 27.0 129 92-221 46-209 (509)
259 PF05978 UNC-93: Ion channel r 98.0 1.9E-05 4.2E-10 64.8 7.9 106 112-219 42-147 (156)
260 KOG3762 Predicted transporter 98.0 4.2E-06 9E-11 80.5 3.9 136 106-242 405-542 (618)
261 PF05631 DUF791: Protein of un 97.8 0.0086 1.9E-07 55.8 21.1 147 336-485 62-222 (354)
262 KOG2325 Predicted transporter/ 97.7 0.00039 8.4E-09 67.8 12.2 104 347-451 78-185 (488)
263 KOG1237 H+/oligopeptide sympor 97.7 0.013 2.7E-07 59.5 22.0 145 93-240 62-238 (571)
264 KOG2816 Predicted transporter 97.7 0.00058 1.3E-08 67.2 12.2 133 349-486 71-206 (463)
265 PF00854 PTR2: POT family; In 97.6 0.00095 2.1E-08 64.8 12.8 104 139-242 2-118 (372)
266 KOG2563 Permease of the major 97.3 0.01 2.2E-07 56.8 15.1 109 344-452 83-201 (480)
267 KOG1479 Nucleoside transporter 97.2 0.035 7.6E-07 52.8 17.6 53 397-449 345-397 (406)
268 PF03092 BT1: BT1 family; Int 97.2 0.0045 9.7E-08 61.2 12.3 149 332-481 14-177 (433)
269 PF12832 MFS_1_like: MFS_1 lik 97.2 0.0003 6.5E-09 50.2 2.6 52 92-147 23-74 (77)
270 TIGR00926 2A1704 Peptide:H+ sy 97.1 0.0082 1.8E-07 62.1 13.3 140 338-477 18-179 (654)
271 PF12832 MFS_1_like: MFS_1 lik 97.1 0.004 8.7E-08 44.4 7.7 62 318-379 10-74 (77)
272 TIGR00769 AAA ADP/ATP carrier 97.1 0.058 1.3E-06 53.4 18.4 140 313-452 8-186 (472)
273 PF05978 UNC-93: Ion channel r 97.0 0.02 4.4E-07 47.1 12.5 103 346-451 43-145 (156)
274 PF07672 MFS_Mycoplasma: Mycop 96.9 0.056 1.2E-06 48.0 14.6 53 193-245 2-60 (267)
275 PF01733 Nucleoside_tran: Nucl 96.7 0.00052 1.1E-08 64.4 0.6 104 346-450 188-303 (309)
276 KOG3880 Predicted small molecu 96.5 0.044 9.5E-07 49.6 11.2 135 110-251 65-203 (409)
277 KOG3098 Uncharacterized conser 96.5 0.018 3.9E-07 56.2 9.6 107 109-216 281-407 (461)
278 PF06963 FPN1: Ferroportin1 (F 96.3 0.027 5.8E-07 55.0 9.8 115 105-220 291-415 (432)
279 PF01770 Folate_carrier: Reduc 96.2 0.28 6.1E-06 47.3 15.8 149 331-482 27-184 (412)
280 PF02487 CLN3: CLN3 protein; 96.0 0.043 9.4E-07 52.7 9.4 111 108-221 282-395 (402)
281 PF03219 TLC: TLC ATP/ADP tran 96.0 0.84 1.8E-05 45.6 18.6 141 312-452 24-201 (491)
282 COG0477 ProP Permeases of the 96.0 0.17 3.7E-06 47.0 13.5 109 344-452 43-153 (338)
283 PRK03612 spermidine synthase; 95.4 0.13 2.8E-06 52.1 10.6 135 105-242 48-192 (521)
284 PF03137 OATP: Organic Anion T 94.5 0.0061 1.3E-07 61.7 -1.6 152 331-482 26-252 (539)
285 KOG0637 Sucrose transporter an 94.1 0.12 2.5E-06 49.9 6.0 134 319-452 43-200 (498)
286 KOG3097 Predicted membrane pro 93.6 6.3 0.00014 36.7 15.6 72 118-191 69-140 (390)
287 PF06779 DUF1228: Protein of u 93.2 0.47 1E-05 34.3 6.5 63 330-392 14-79 (85)
288 KOG2601 Iron transporter [Inor 93.0 2.6 5.5E-05 39.8 12.4 36 414-449 405-440 (503)
289 PF00854 PTR2: POT family; In 92.7 0.81 1.8E-05 44.4 9.7 107 371-478 2-121 (372)
290 TIGR00939 2a57 Equilibrative N 92.6 3.3 7.1E-05 41.0 13.7 110 109-220 309-431 (437)
291 COG3202 ATP/ADP translocase [E 92.6 10 0.00022 37.5 16.3 101 352-452 74-205 (509)
292 KOG2881 Predicted membrane pro 92.5 2.6 5.6E-05 37.2 11.1 33 355-387 255-287 (294)
293 PRK03612 spermidine synthase; 92.1 7.4 0.00016 39.6 15.8 45 407-452 122-166 (521)
294 KOG3626 Organic anion transpor 91.9 0.45 9.8E-06 49.2 6.9 153 334-486 123-349 (735)
295 KOG1479 Nucleoside transporter 90.2 1 2.3E-05 43.2 7.2 127 91-219 265-401 (406)
296 PF07672 MFS_Mycoplasma: Mycop 89.8 3.1 6.7E-05 37.3 9.2 105 109-214 143-256 (267)
297 KOG3574 Acetyl-CoA transporter 88.5 13 0.00028 35.6 12.6 59 330-389 52-118 (510)
298 COG5336 Uncharacterized protei 80.3 4.9 0.00011 30.0 4.9 44 108-151 43-86 (116)
299 KOG3880 Predicted small molecu 77.7 4.3 9.3E-05 37.4 4.8 75 147-221 328-402 (409)
300 KOG4332 Predicted sugar transp 77.0 33 0.00071 31.2 9.9 132 108-240 283-424 (454)
301 TIGR02230 ATPase_gene1 F0F1-AT 73.0 11 0.00023 28.3 5.1 36 116-151 51-86 (100)
302 PF09527 ATPase_gene1: Putativ 72.4 12 0.00027 24.4 4.8 39 114-152 7-45 (55)
303 PF01733 Nucleoside_tran: Nucl 71.7 1.2 2.6E-05 41.8 -0.1 110 111-220 186-307 (309)
304 COG4262 Predicted spermidine s 63.8 34 0.00073 32.3 7.3 107 106-216 42-158 (508)
305 PF11947 DUF3464: Protein of u 62.6 48 0.001 27.1 7.2 36 411-446 110-145 (153)
306 KOG3810 Micronutrient transpor 60.0 12 0.00026 35.3 3.8 96 108-204 272-369 (433)
307 COG5336 Uncharacterized protei 51.9 46 0.001 25.1 5.0 27 351-377 53-80 (116)
308 KOG2601 Iron transporter [Inor 51.8 1.1E+02 0.0023 29.6 8.5 28 350-377 73-100 (503)
309 PF06912 DUF1275: Protein of u 50.8 1.5E+02 0.0032 25.9 9.2 39 114-153 53-94 (209)
310 PF03547 Mem_trans: Membrane t 48.1 1.3E+02 0.0028 29.2 9.3 18 351-368 6-23 (385)
311 PF13000 Acatn: Acetyl-coenzym 47.4 1.6E+02 0.0035 29.6 9.4 28 361-388 61-89 (544)
312 COG1422 Predicted membrane pro 45.5 1E+02 0.0023 26.4 6.8 16 223-238 44-59 (201)
313 KOG4830 Predicted sugar transp 44.3 2.5E+02 0.0054 25.6 9.7 31 109-140 54-93 (412)
314 COG4769 Predicted membrane pro 41.2 34 0.00073 28.1 3.2 53 115-174 81-133 (181)
315 TIGR03644 marine_trans_1 proba 40.6 3.6E+02 0.0079 26.4 13.6 22 123-145 114-135 (404)
316 PF12670 DUF3792: Protein of u 39.0 1.8E+02 0.004 22.5 8.2 37 340-376 34-70 (116)
317 TIGR02230 ATPase_gene1 F0F1-AT 38.2 1.7E+02 0.0038 22.0 6.6 32 351-382 54-85 (100)
318 TIGR00836 amt ammonium transpo 37.1 4.2E+02 0.009 26.1 11.4 20 432-451 312-331 (403)
319 PF12805 FUSC-like: FUSC-like 35.0 1.6E+02 0.0035 27.2 7.3 38 142-179 3-41 (284)
320 COG1079 Uncharacterized ABC-ty 34.4 3.9E+02 0.0085 24.9 11.9 95 354-452 21-115 (304)
321 KOG3097 Predicted membrane pro 34.1 1.7E+02 0.0036 27.8 6.8 32 351-382 69-100 (390)
322 PF00909 Ammonium_transp: Ammo 33.9 4.6E+02 0.01 25.7 14.8 24 193-216 107-130 (399)
323 PF11947 DUF3464: Protein of u 32.1 2.4E+02 0.0052 23.2 6.8 30 108-138 97-126 (153)
324 PF10785 NADH-u_ox-rdase: NADH 30.8 1.8E+02 0.0038 21.2 5.3 42 118-160 29-77 (86)
325 TIGR01667 YCCS_YHJK integral m 30.5 4.8E+02 0.01 27.9 10.5 56 125-180 41-100 (701)
326 KOG1237 H+/oligopeptide sympor 30.3 3.9E+02 0.0085 27.7 9.7 58 160-217 457-514 (571)
327 PF07760 DUF1616: Protein of u 30.3 1.8E+02 0.004 26.9 6.8 61 164-225 22-82 (287)
328 TIGR01666 YCCS hypothetical me 28.3 2.1E+02 0.0045 30.5 7.4 54 126-179 42-99 (704)
329 COG1268 BioY Uncharacterized c 27.8 1.8E+02 0.0039 24.8 5.6 24 113-137 88-111 (184)
330 PF10183 ESSS: ESSS subunit of 27.3 65 0.0014 24.5 2.7 30 222-251 56-85 (105)
331 PRK10263 DNA translocase FtsK; 26.2 7.5E+02 0.016 28.6 11.2 19 351-369 63-81 (1355)
332 PF02632 BioY: BioY family; I 25.7 2.4E+02 0.0052 23.1 5.9 26 113-139 59-84 (148)
333 TIGR00844 c_cpa1 na(+)/h(+) an 25.6 8.9E+02 0.019 26.3 19.9 35 202-236 106-141 (810)
334 COG2119 Predicted membrane pro 25.4 2.5E+02 0.0054 23.9 5.9 36 351-386 145-180 (190)
335 PF02990 EMP70: Endomembrane p 23.6 4.9E+02 0.011 26.6 9.0 25 346-370 303-327 (521)
336 PF11023 DUF2614: Protein of u 20.8 4E+02 0.0086 20.5 5.9 8 366-373 7-14 (114)
337 PRK15049 L-asparagine permease 20.6 9E+02 0.019 24.5 11.1 7 30-36 30-36 (499)
338 PF07456 Hpre_diP_synt_I: Hept 20.5 2.9E+02 0.0063 22.6 5.3 51 113-170 67-117 (148)
339 COG4262 Predicted spermidine s 20.2 7.9E+02 0.017 23.7 12.6 29 394-422 104-132 (508)
No 1
>TIGR00898 2A0119 cation transport protein.
Probab=100.00 E-value=8.5e-50 Score=403.65 Aligned_cols=457 Identities=32% Similarity=0.553 Sum_probs=373.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCC-----------------ccCccCC----------
Q 040646 28 GDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNG-----------------VSNLCQL---------- 80 (509)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~-----------------~~~~c~~---------- 80 (509)
|++||||+++++++++..++.+++.....|+...|+|+|..++..+ .++.|..
T Consensus 1 g~~g~~q~~~~~~~~~~~~~~~~~~~~~~f~~~~p~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (505)
T TIGR00898 1 GEFGPFQRRTFLLLALPIALLAFHFVLIVFLGATPEHHCRLPDAANLSSRCELNLTLPRLPDGRPESCLRFMVDQWANPS 80 (505)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccCCCCcccCChHhHhceeccCCCCCCCCCCccccccchhhhc
Confidence 6899999999999999999999999999999999999997553110 1123321
Q ss_pred -------------------CCCCceecCC-CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHH
Q 040646 81 -------------------PKNSWSWDLQ-AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNM 140 (509)
Q Consensus 81 -------------------~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~ 140 (509)
+.++|.|+.+ ..|.+.+|||++|+++.+.+++.+++.++..+++++.|+++|| +|||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr-~Grr~~ 159 (505)
T TIGR00898 81 LLGCEPLKLSDLGLAATEPCLDGWEYSYDTFSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDR-FGRKKV 159 (505)
T ss_pred ccccccchhcccCCCCCCCCCCCcEecCCcccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhh-ccchHH
Confidence 1346888864 5899999999999888899999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646 141 LFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN 220 (509)
Q Consensus 141 l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 220 (509)
++++.++.++++++.++++|++.+++.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++++.
T Consensus 160 ~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~ 239 (505)
T TIGR00898 160 LLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFI 239 (505)
T ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhH
Q 040646 221 RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA 300 (509)
Q Consensus 221 ~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (509)
.+ ||+.|++.+++.++..+. .+++||+|+|+..+++.+++.+.+++..+.+.. ....+..+...+++.++++++.+
T Consensus 240 ~~--wr~~~~~~~i~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 315 (505)
T TIGR00898 240 PD--WRWLQLAVSLPTFLFFLL-SWFVPESPRWLISQGRIEEALKILQRIAKINGK-KLPAEVLSLSLEKDLSSSKKQYS 315 (505)
T ss_pred hH--HHHHHHHHHHHHHHHHHH-HHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCC-CCCHHHHhhhhhhhhhhccCCCc
Confidence 55 999999999888876544 478999999999999999988888877653321 11111111110111111112346
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHH
Q 040646 301 IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMS 380 (509)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~ 380 (509)
.++++++|.++...+...+.++.....++.++.+.+..+.+......+.++..+++.++.+++.||+|||+.+.++.++.
T Consensus 316 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~ 395 (505)
T TIGR00898 316 FLDLFRTPNLRKTTLCLMMLWFTTAFSYYGLVLDLGNLGGNIYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLA 395 (505)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 78999999988888888888888888888888888888888777777888899999999999999999999999988888
Q ss_pred HHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchh
Q 040646 381 GVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFL 460 (509)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~ 460 (509)
+++++++.+.+...........++..++....++..+.+..|.+|++.|++++|+.+....+|++++|.+.+....+...
T Consensus 396 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~ 475 (505)
T TIGR00898 396 GVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFL 475 (505)
T ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 88877776655443333444444555566667788889999999999999999999999999999999998854445566
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCcc
Q 040646 461 SYGIFGLVIGLCGLFVIGLPETRDTQLSD 489 (509)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (509)
.+.+++++.++++++.+++||+++++++|
T Consensus 476 ~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 476 PLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred HHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 77778887777777778889999887765
No 2
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=100.00 E-value=8.2e-44 Score=362.44 Aligned_cols=427 Identities=20% Similarity=0.287 Sum_probs=325.8
Q ss_pred ChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceee
Q 040646 18 SLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIIS 97 (509)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~ 97 (509)
.+|+++++ . .+++++|.++++++++.+.+++|...+.+. +|.+.+
T Consensus 151 ~~d~~l~~-~-~~~~~~~~l~~i~~l~~~~~g~d~~~is~i---------------------------------lp~i~~ 195 (742)
T TIGR01299 151 QYELIIQE-C-GHGRFQWALFFVLGLALMADGVEVFVVGFV---------------------------------LPSAEK 195 (742)
T ss_pred HHHHHHHH-c-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHH
Confidence 35666665 3 478999999999999999999999888775 899999
Q ss_pred eeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccch
Q 040646 98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRAT 177 (509)
Q Consensus 98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 177 (509)
+++++ ..+.+++.++++++.+++++++|+++|| +|||+++++++++.++++++++++++++.++++|++.|++.|+
T Consensus 196 ~~gls---~~~~g~l~s~~~lG~iiG~li~G~LsDR-~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~ 271 (742)
T TIGR01299 196 DLCIP---DSGKGMLGLIVYLGMMVGAFFWGGLADK-LGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGG 271 (742)
T ss_pred HhCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 99994 4578999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred hhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-Hhc-------------CCcchHHHHHHHhhHHHHHHHh
Q 040646 178 IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INR-------------GSSWRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 178 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~-------------~~~wr~~f~~~~~~~~~~~~~~ 243 (509)
..+...+++.|++|+++|++.++++.+++.+|.++++.+++ +.. ..+||+.+++.+++.++. ++.
T Consensus 272 ~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~-ll~ 350 (742)
T TIGR01299 272 AIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFA-IGA 350 (742)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHH-HHH
Confidence 99999999999999999999999999999999999988753 222 236999999988877764 466
Q ss_pred heeecCchHHHHhcCCHHHHHHHHHHHHhhcCCcc-cccc------ccCccc-----ccccccc---------------c
Q 040646 244 RFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRS-LIMD------FNNVSF-----EQETWNV---------------D 296 (509)
Q Consensus 244 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~-----~~~~~~~---------------~ 296 (509)
.+++||||+|+..+++.+++.+.++++.+.+.... ...+ .+.... +.+.... .
T Consensus 351 ~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (742)
T TIGR01299 351 LTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGG 430 (742)
T ss_pred HHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhh
Confidence 68899999999999999999999998876332110 0000 000000 0000000 0
Q ss_pred chhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC--------------------------------------
Q 040646 297 LYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL-------------------------------------- 338 (509)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------- 338 (509)
.+.+++++|+++ .++.++..++.|++..+.+|++..++..+
T Consensus 431 ~~~~~~~lf~~~-~~~~tl~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (742)
T TIGR01299 431 IWGNFLRCFNPE-VREITIKLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGG 509 (742)
T ss_pred HHHHHHHHcCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhcccc
Confidence 112456666554 46777777778887777666643321100
Q ss_pred --------Cc----------------------------------------------------------------------
Q 040646 339 --------SF---------------------------------------------------------------------- 340 (509)
Q Consensus 339 --------g~---------------------------------------------------------------------- 340 (509)
|.
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~ 589 (742)
T TIGR01299 510 EYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDG 589 (742)
T ss_pred ccccchhhcccccccccccccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCc
Confidence 00
Q ss_pred ------hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhH
Q 040646 341 ------NLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFS 414 (509)
Q Consensus 341 ------~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (509)
.......+.+++.+++.+++++++||+|||+++.++.++.+++++++.+.... ...+++.++..++....++
T Consensus 590 ~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~--~~ll~~~~l~g~~~~~~~~ 667 (742)
T TIGR01299 590 DDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSE--SAMIALLCLFGGLSIAAWN 667 (742)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHH
Confidence 01122345558889999999999999999999999988888888777664432 2233333344455556778
Q ss_pred HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH-hhcccchhHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 040646 415 LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA-AGRQNNFLSYGIFGLVIGLCGLFVIGLPETRDTQL 487 (509)
Q Consensus 415 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (509)
...++++|++|++.|++++|+.+....+|++++|++.+ ........++.+.+++.++++++.+++||++++.+
T Consensus 668 ~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~~~~l 741 (742)
T TIGR01299 668 ALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTRGQVL 741 (742)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCccccc
Confidence 88999999999999999999999999999999999987 33334456677777777777777778899887653
No 3
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=7.9e-42 Score=302.96 Aligned_cols=427 Identities=22% Similarity=0.333 Sum_probs=346.5
Q ss_pred CCCChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcc
Q 040646 15 SRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTS 94 (509)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~ 94 (509)
++...||+.+. + +|||+|+........+++.+.+..+...++ .|.
T Consensus 59 k~~tv~ea~~a-i-gfgrfq~yl~~~ag~gwmad~m~~m~~s~i---------------------------------~~~ 103 (528)
T KOG0253|consen 59 KSFTVDEAMNA-I-GFGRFQWYLFFVAGMGWMADAMEMMLLSLI---------------------------------LPA 103 (528)
T ss_pred ceeeehhhhhh-c-CcccchhhHHHHhhhHHHHHHHHHHHHHHH---------------------------------HHH
Confidence 34556777776 3 599999999999999999999999888886 789
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG 174 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 174 (509)
+.+.++. +..|..++....+.|..+++..+|.++|+ +|||+.+.+..+..++...+.+.++|+..+.+.|.+.|+|
T Consensus 104 l~~~w~~---s~~q~~llt~~v~~gmllga~~w~l~~d~-~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g 179 (528)
T KOG0253|consen 104 LDEVWGP---SEGQAPLLTLSVFLGMLVGAMVWGLSADT-IGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFG 179 (528)
T ss_pred HHhhhch---hhhhhhHHHHHHHhhhhhhhhhhheehhh-hhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhcc
Confidence 9999997 55689999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred cchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHhhHHHHHHHhheeecCchHH
Q 040646 175 RATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRGSSWRRIYLYTSIPTILYCILVRFLVRESPRW 253 (509)
Q Consensus 175 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~ 253 (509)
.|+ .|...++-.|.-|..+|+..+-.. ..+.+|.++...+++ .+.+.||||.....+.+..+.+ ...+++|||||+
T Consensus 180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a-~f~~w~~ESpRf 256 (528)
T KOG0253|consen 180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAA-RFLVWVYESPRF 256 (528)
T ss_pred CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH-HHHhhcccCcch
Confidence 999 888899999999999999888777 999999999999975 5678899999998887777755 556889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCcccccc---------cc----CcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646 254 LFIQGRKEEAVSIIKSISTSENQRSLIMD---------FN----NVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320 (509)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (509)
...+++.+++.+.++++++. |+...+.. .+ +.+..+.+..++......+++ .|.+++..+.....
T Consensus 257 ~~~~G~~~kAletL~kiArm-Ng~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLl-sp~lrkttlllw~i 334 (528)
T KOG0253|consen 257 YLAKGDDYKALETLHKIARM-NGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLL-SPKLRKTTLLLWRI 334 (528)
T ss_pred hhhcCChHHHHHHHHHHHHh-cCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhc-ChHHHHHHHHHHHH
Confidence 99999999999999999873 32221110 00 011111112233344566666 45667888888889
Q ss_pred HHHHhHhhhccccccccC---C------------------------chHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHH
Q 040646 321 GFGIGMVYYGMPLGLGSL---S------------------------FNLYLSVTFNALSELPASLITFFLIGKLKRKSSL 373 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~---g------------------------~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~ 373 (509)
|+++.+.||++.+...++ | ...+.-..+.++..++|.++.+++.||+|||+.+
T Consensus 335 wfgnafsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTM 414 (528)
T KOG0253|consen 335 WFGNAFSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTM 414 (528)
T ss_pred HHhhHHHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHH
Confidence 999888888754322110 0 0123345677799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 374 LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
....++.+++.+++......+ ....+.+.+.++..+.+...++|.+|++|+..|+++.|.+..+..+|+++.|++.-.
T Consensus 415 al~l~~f~iflfll~~c~~rn--~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~ 492 (528)
T KOG0253|consen 415 ALSLILFGIFLFLLTTCKTRN--AYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMR 492 (528)
T ss_pred HHHHHHHHHHHHHHHHhcCcc--hhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHH
Confidence 999999988887777744433 333445566677778889999999999999999999999999999999999999965
Q ss_pred hcccchhHHHHHHHHHHHHHHHHhhcc-CCCCCCC
Q 040646 454 GRQNNFLSYGIFGLVIGLCGLFVIGLP-ETRDTQL 487 (509)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 487 (509)
.......+..+++.+++++.+...++| |+|+|.+
T Consensus 493 ~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 493 AELSTSLPIFVYGALFILAGIAVCFFPIETKGRSL 527 (528)
T ss_pred hccceeehHHHHHHHHHHHHHHheeeeeccCCCCC
Confidence 566677788889998888888887777 8888764
No 4
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=6.7e-40 Score=331.85 Aligned_cols=474 Identities=31% Similarity=0.517 Sum_probs=378.1
Q ss_pred ChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCcccc--------CCCCCCcc--------------
Q 040646 18 SLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCT--------DDSCNGVS-------------- 75 (509)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~--------~~~~~~~~-------------- 75 (509)
+.|+..+. .|+++++|.....+.+........+.....+....|.++|. .+.|....
T Consensus 2 ~~~~~~~~-~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~ 80 (521)
T KOG0255|consen 2 DLDEILSS-VGDFGRYQKLLLLLLGLPSIFSALHSFAQIFLAFVPDHHCTEWGCLNDAEDSCLVYWDPTLDPANPLNWPS 80 (521)
T ss_pred chHHHHHH-hcCCcHHHHHHHHHHHHHHhHHHHHHHHHHhhccCCCchhhhhhcccCCcccceecccCccCcCCcccccc
Confidence 44566664 88999999999999999999998888999999999987663 33344321
Q ss_pred -----CccCCCCCCceecCCC-CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHH
Q 040646 76 -----NLCQLPKNSWSWDLQA-HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMS 149 (509)
Q Consensus 76 -----~~c~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~ 149 (509)
..+..++++|.|+.+. .-++..|+++.|++.....+..+++++|..+|++++|+++|| +|||++++.++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~-~GRk~~~~~~~~~~~ 159 (521)
T KOG0255|consen 81 WKKWLLVIVICLDGWVYDYGSSVYSIVSEWNLVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDR-FGRKPVLLVSLLLFI 159 (521)
T ss_pred ccccccccccccceeEecCCCCcccccchhceeeCcHhHHHHHHHHHHHHHHHHHhhheehHhh-cccHHHHHHHHHHHH
Confidence 1112346788888765 556677788888888999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHH
Q 040646 150 VSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIY 229 (509)
Q Consensus 150 i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f 229 (509)
++.++.++++|++.+++.|++.|++.++...+...++.|++++++|+.+..+....+..|.+..+..+++.. +||+.+
T Consensus 160 i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~--~Wr~~~ 237 (521)
T KOG0255|consen 160 IFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITR--DWRWLF 237 (521)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHH
Confidence 999999999999999999999999999999999999999999999999999944444444444444577777 599999
Q ss_pred HHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCcccccccc-C--cccccccccccchhHHHHHHh
Q 040646 230 LYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFN-N--VSFEQETWNVDLYSAIKILVE 306 (509)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~ 306 (509)
++..++.++..+. +++.||+|+|+..+++.+++.+.+++..+.++......+.. . ...+......++...+.++++
T Consensus 238 ~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 316 (521)
T KOG0255|consen 238 WIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFR 316 (521)
T ss_pred HHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhc
Confidence 9999999886544 66777999999999999999999998876432111111111 1 111111122223345889999
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 040646 307 KKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVL 386 (509)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~ 386 (509)
.|..++..+...+.++.....++++++....+|.+.+....+.+....++....+...|++|||.....+..+..+++++
T Consensus 317 ~~~l~~~~~~~~~~~~~~~~~y~gl~~~~~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~ 396 (521)
T KOG0255|consen 317 TPRLRYRTLYLLFIWFVFSLVYYGLSLNVSGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLL 396 (521)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHhhhhhhhhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence 99888899999999999999999999999999999998888888888999999999999999999999999999999888
Q ss_pred HHHhccchh-HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc-ccchhHHHH
Q 040646 387 CVVMGKIWT-SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR-QNNFLSYGI 464 (509)
Q Consensus 387 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~-~~~~~~~~~ 464 (509)
..+...... +....+..++.++.+..+...+.+..|.+|+..|..+.+..+....+|++++|.+..... ......+.+
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~ 476 (521)
T KOG0255|consen 397 FGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLIL 476 (521)
T ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHH
Confidence 888665444 244555666667777777888999999999999999999999999999999999986332 223333333
Q ss_pred HHHHHHHHHHHH-hhccCCCCCCCcccHHHHHH
Q 040646 465 FGLVIGLCGLFV-IGLPETRDTQLSDTMDEEEY 496 (509)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 496 (509)
++....+.+.+. .++||++++.+.+..++.++
T Consensus 477 ~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~~ 509 (521)
T KOG0255|consen 477 FGWLALLLGLLSLLLLPETKGKPLPGTLLDAEN 509 (521)
T ss_pred HHHHHHHHHHHHHhcCcccCCCCCchhHHHHHh
Confidence 455555555554 88999999999887766663
No 5
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=100.00 E-value=1.2e-40 Score=335.31 Aligned_cols=422 Identities=19% Similarity=0.213 Sum_probs=293.5
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeee-ccc-cccc
Q 040646 29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEW-DLE-CASS 106 (509)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~-~~~-~~~~ 106 (509)
+++++|++++.+++++.+.+++|....+.. .|.+..++ +.+ ..++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~ 55 (502)
T TIGR00887 9 PFGWQHFRAIVIAGVGFFTDSYDLFCISLV---------------------------------TKMLGYVYYHGKGPLPS 55 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhccCcccchH
Confidence 589999999999999999999999888775 34443321 100 0133
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHhhccchhhh
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN------MWIYSVLRFINGFGRATIGT 180 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~ 180 (509)
.+.+++.+.+.+++.++++++|+++|| +|||+++.++.++..+++++++++++ ++.++++|++.|++.|...+
T Consensus 56 ~~~~~~~~~~~ig~~ig~~~~g~l~d~-~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~ 134 (502)
T TIGR00887 56 SVSAAVNGSASIGTLAGQLFFGWLADK-LGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYP 134 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhH
Confidence 467899999999999999999999999 99999999999999999999998875 78999999999999999999
Q ss_pred hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-Hhc-----------------------CCcchHHHHHHHhhH
Q 040646 181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INR-----------------------GSSWRRIYLYTSIPT 236 (509)
Q Consensus 181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~-----------------------~~~wr~~f~~~~~~~ 236 (509)
....++.|++|+++|++++++.+....+|.++++.++. +.. +.+||++|.+.++++
T Consensus 135 ~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~ 214 (502)
T TIGR00887 135 LSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPA 214 (502)
T ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888753 211 247999999888888
Q ss_pred HHHHHHhheeecCchHHHHhcCCHH-HHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhch---HHHH
Q 040646 237 ILYCILVRFLVRESPRWLFIQGRKE-EAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKK---WALR 312 (509)
Q Consensus 237 ~~~~~~~~~~~~esp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~ 312 (509)
++.. +..+++||||+|+..+++.+ ++.+.+.+....+.+ +..++.++.+ ++ ++....+++++++++ ..++
T Consensus 215 ~i~~-~~~~~lpESpr~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~ 288 (502)
T TIGR00887 215 LLAL-YFRLTIPETPRYTADVAKDVEQAASDMSAVLQVKIE-AEPDEVEKAS---TA-VEVPKASWSDFFTHFFKWRHGK 288 (502)
T ss_pred HHHH-HHHHhCCCCHHHHHHhCcchHHHHHHHHHHhccccc-cCcccccchh---cc-ccchhhhHHHHHHHHhhhHHHH
Confidence 7744 55678999999998887764 355555554431111 1111111110 00 111123577777642 2223
Q ss_pred HHHHHHHHHHHHhHhhhc----cccccccCCchHH--------------H-HHHHHHhhhhhHHHHHHHHhhhcCchhHH
Q 040646 313 RLSAIMVTGFGIGMVYYG----MPLGLGSLSFNLY--------------L-SVTFNALSELPASLITFFLIGKLKRKSSL 373 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~--------------~-~~~~~~~~~~~~~~~~g~l~dr~gr~~~~ 373 (509)
..+.....+++....+|. .|.++++.|.+.. . ...+..++.+++.+++++++||+|||+++
T Consensus 289 ~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l 368 (502)
T TIGR00887 289 HLLGTAGSWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQ 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHccccccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHH
Confidence 333333444444444444 3444445554311 0 12233356777889999999999999998
Q ss_pred HHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 374 LGFTIMSGVCSVLCVVMGKI--WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
+.+..+.++++.++...... .........+...+......+..+.+..|.+|++.|+++.|+.+..+.+|++++|.+.
T Consensus 369 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~ 448 (502)
T TIGR00887 369 LMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF 448 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 88877777666555542211 1111111111111222233456778889999999999999999999999999999888
Q ss_pred Hhhcc------------cchhHHHHHHHHHHHHHHHHhhccCCCCCCCccc
Q 040646 452 AAGRQ------------NNFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDT 490 (509)
Q Consensus 452 ~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (509)
+.... +....+.+++++.+++.++.+++||+++++++|.
T Consensus 449 ~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lpEt~~~~leei 499 (502)
T TIGR00887 449 LYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIPETKGKSLEEL 499 (502)
T ss_pred hhhhccccccccccccccchHHHHHHHHHHHHHHHHheEeccCCCCCHHhh
Confidence 73221 1234567777777766666677799998876543
No 6
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=311.57 Aligned_cols=388 Identities=21% Similarity=0.279 Sum_probs=291.4
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHhhccchhhhhhe
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS---TNMWIYSVLRFINGFGRATIGTCAI 183 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r~l~G~~~g~~~~~~~ 183 (509)
...+.+++++.+|.++|+++.|.++|| +|||..+.++.++..++.+++.++ +++.+++++|++.|+..|......+
T Consensus 60 ~lwS~~vs~f~iG~~~Gs~~~~~la~~-~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~p 138 (485)
T KOG0569|consen 60 LLWSLIVSIFFIGGMIGSFSSGLLADR-FGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVP 138 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHH
Confidence 467889999999999999999999999 999999999998888888877664 6799999999999999999999999
Q ss_pred eeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH---HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHh-cCC
Q 040646 184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA---YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFI-QGR 259 (509)
Q Consensus 184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~-~~~ 259 (509)
.|+.|..|++.||....+.+.+..+|.+++..++ .+.+...|++.+.+..+++++.. +...++||||+|+.. +++
T Consensus 139 myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l-~~l~~~PESPk~Ll~~k~~ 217 (485)
T KOG0569|consen 139 MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQL-ALLPFLPESPKYLLIKKGD 217 (485)
T ss_pred HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHH-HHHhcCCCCcchHHHHcCC
Confidence 9999999999999999999999999999998875 34466679999999999998864 667899999999998 799
Q ss_pred HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH-----hHhhhccccc
Q 040646 260 KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI-----GMVYYGMPLG 334 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 334 (509)
.++|++.+++.++.+++++..++..+ +.++++..+++..+++++++++..++...+.+...+++ +...++...+
T Consensus 218 ~~~A~~sl~~y~G~~~~~~~~e~~~~-e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i 296 (485)
T KOG0569|consen 218 EEEARKALKFYRGKEDVEAEIEEMLR-EIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSI 296 (485)
T ss_pred HHHHHHHHHHHhCCCcchhHHHHHHH-HHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHH
Confidence 99999999999874432222211111 11112222235567999999998888766666555533 3344555566
Q ss_pred cccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---cch-hHHH---HHHHHH
Q 040646 335 LGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---KIW-TSVE---IGLELV 404 (509)
Q Consensus 335 ~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~---~~~~~~ 404 (509)
+++.|++.. .+....++..++.++++.++.||+|||++++.+..++.++.+++.... ... .+.. ++..++
T Consensus 297 ~~~aG~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~i~~~~~ 376 (485)
T KOG0569|consen 297 FKTAGFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLCIAAIFL 376 (485)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 677777644 456667788999999999999999999999999888888777665521 111 1111 111122
Q ss_pred HHHHH-HHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh-hcccchhHHHHHHHHHHHHHHH-HhhccC
Q 040646 405 AFFSA-CTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA-GRQNNFLSYGIFGLVIGLCGLF-VIGLPE 481 (509)
Q Consensus 405 ~~~~~-~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 481 (509)
..+.. .+..|+.+-+.+|++|++.|+.++++......+..++-.+..-. ........++++.+.+++..+. +..+||
T Consensus 377 ~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPE 456 (485)
T KOG0569|consen 377 FIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPE 456 (485)
T ss_pred HHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcc
Confidence 22222 23347889999999999999999999999888887765555441 1111124455555555544444 578899
Q ss_pred CCCCCCcccHHHHHHh
Q 040646 482 TRDTQLSDTMDEEEYK 497 (509)
Q Consensus 482 ~~~~~~~~~~~~~~~~ 497 (509)
||+|+..|..++.+++
T Consensus 457 Tkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 457 TKGRTPYEIIEELEKR 472 (485)
T ss_pred cCCCCHHHHHHHHHhC
Confidence 9999998887777655
No 7
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.4e-37 Score=282.28 Aligned_cols=403 Identities=16% Similarity=0.167 Sum_probs=296.3
Q ss_pred CChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCccee
Q 040646 17 PSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSII 96 (509)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~ 96 (509)
.+.+|+.+. +.|+|+++++...+++...++.+-+.++. .|.+.
T Consensus 14 ~p~~~~~~~----y~~~r~qif~~~fiGYa~fYl~RknF~~a---------------------------------~p~l~ 56 (448)
T COG2271 14 LPASEIDKT----YKRWRIQIFLSIFIGYAAFYLTRKNFNLA---------------------------------MPALI 56 (448)
T ss_pred CChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhHhhc---------------------------------cHHHH
Confidence 344454433 67899999999999999999999888885 89999
Q ss_pred eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 040646 97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA 176 (509)
Q Consensus 97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 176 (509)
+|.++ |..|.|++.+.++++|.++-++.|.++|| .++|+.+.+++++.++.+++++++++.+.+.+..+++|+.+|
T Consensus 57 e~~~l---sk~~lG~i~s~f~i~YG~sKf~~G~~sDr-~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg 132 (448)
T COG2271 57 EDGGL---SKTQLGILGSAFSITYGVSKFVMGVLSDR-SNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQG 132 (448)
T ss_pred HhcCC---CHHHHHHHHHHHHHHHHHHHHHhhhhccc-CCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 99999 55699999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH---HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHH
Q 040646 177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI---AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRW 253 (509)
Q Consensus 177 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~ 253 (509)
..+|.+...+..|++++|||+..++++.+.++|..+.|++ +++..+.+||..|++.++++++++++.++..+|+|+.
T Consensus 133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs 212 (448)
T COG2271 133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQS 212 (448)
T ss_pred CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999998777665 4667777999999999999999999999999999852
Q ss_pred HHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccch-hHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccc
Q 040646 254 LFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLY-SAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMP 332 (509)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
.-.. ..+|- .++ +.+..+++++.+.-..+ .-.+.+++||..|...+...+.+..=.......|
T Consensus 213 ~GLP-~ie~~----------~~d-----~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p 276 (448)
T COG2271 213 EGLP-PIEEY----------RGD-----PLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGP 276 (448)
T ss_pred cCCC-CHHHh----------hcC-----chhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1100 11110 000 00000000000001111 1245577888877666666666665444444445
Q ss_pred ccc-ccCCchH---HHHHHHHHhhhhhHHHHHHHHhhhc--CchhHHHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646 333 LGL-GSLSFNL---YLSVTFNALSELPASLITFFLIGKL--KRKSSLLG-FTIMSGVCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 333 ~~~-~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~--gr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
.++ +..+++. .....+.-.++++|++++||++||+ |||....+ .++...++.+.+...+..+......+..+.
T Consensus 277 ~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~~~~~~~l~~~~l~~i 356 (448)
T COG2271 277 LYLSEVKGFSLVKANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWLAPNGSYLLDAILLFII 356 (448)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 544 4566664 3445566689999999999999996 66766544 444444444444444444444444444444
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
++...+...+.-..+.|..|++..|++.|+...++++ |...+....+.. ..+....|.++.+.++++.++.
T Consensus 357 Gf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll 430 (448)
T COG2271 357 GFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLL 430 (448)
T ss_pred HHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHH
Confidence 4444455566778899999999999999999999988 777777776632 2344445555555555555443
No 8
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=100.00 E-value=4.6e-36 Score=300.87 Aligned_cols=391 Identities=17% Similarity=0.156 Sum_probs=259.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccc-ccch--
Q 040646 35 LVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSL-IKGL-- 111 (509)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~-- 111 (509)
+.++++..++.+++++|.....+. .|.+.++|+.+.++.. ..+.
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~---------------------------------~~~i~~~~~~~~~~~~~~~~~~~ 61 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFV---------------------------------AYALGKVFFPGADPSVQMIAALA 61 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHhhCCCCCcHHHHHHHHH
Confidence 456677889999999999988886 7888888875433211 1122
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHH--------HHHHHHHHhhccchhhhhhe
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWI--------YSVLRFINGFGRATIGTCAI 183 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~--------l~~~r~l~G~~~g~~~~~~~ 183 (509)
+.++.++++.++++++|+++|| +|||+++.+++++++++++++++++|++. +++.|+++|++.|+.++...
T Consensus 62 ~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~ 140 (490)
T PRK10642 62 TFSVPFLIRPLGGLFFGMLGDK-YGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGAS 140 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHH
Confidence 2577889999999999999999 99999999999999999999999999874 89999999999999999999
Q ss_pred eeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-H--------hcCCcchHHHHHHHhhHHHHHHHhheeecCchHHH
Q 040646 184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-I--------NRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWL 254 (509)
Q Consensus 184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~--------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~ 254 (509)
+++.|++|+++||++.++...+..+|.++++.+.. + ..++|||+.|++.+++.++ .++.+..+||+|+|.
T Consensus 141 ~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp~~~ 219 (490)
T PRK10642 141 IFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETPAFQ 219 (490)
T ss_pred HHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCChhHH
Confidence 99999999999999999999888888888876532 2 1368999999997766664 445567889999875
Q ss_pred HhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH----HHHHHhHhhhc
Q 040646 255 FIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV----TGFGIGMVYYG 330 (509)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~ 330 (509)
..+++.++. .. + .. ++++..++++++++.. +....... ..+........
T Consensus 220 ~~~~~~~~~----------~~--~---~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 272 (490)
T PRK10642 220 QHVDKLEQG----------DR--E---GL----------QDGPKVSFKEIATKHW--RSLLTCIGLVIATNVTYYMLLTY 272 (490)
T ss_pred HHHHhhhhh----------cc--c---cc----------cccccCCHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 322211110 00 0 00 0001123556665421 22221111 11222223334
Q ss_pred ccccc-ccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHH-HHHhccchhHHHHHHHHHH
Q 040646 331 MPLGL-GSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVL-CVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 331 ~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 405 (509)
.|.++ +..|.+.... .....++.+++.++.|+++||+|||+.+..+.++..+..+. +...............++.
T Consensus 273 ~p~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (490)
T PRK10642 273 MPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLML 352 (490)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 45555 4456654332 23344667788889999999999999887776544333222 2222222222222222333
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGLFVIGLPET 482 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (509)
++..+...+....+.+|.+|++.|+++.|+.+....+++.++|.+.+... .....++....+..+++.+..+++||+
T Consensus 353 g~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes 432 (490)
T PRK10642 353 AVILNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKET 432 (490)
T ss_pred HHHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccc
Confidence 33334445566777889999999999999876667777778888877321 122333344444455555555667887
Q ss_pred CCCCC
Q 040646 483 RDTQL 487 (509)
Q Consensus 483 ~~~~~ 487 (509)
+++..
T Consensus 433 ~~~~~ 437 (490)
T PRK10642 433 ANRPL 437 (490)
T ss_pred cCCCC
Confidence 65443
No 9
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=100.00 E-value=9.4e-37 Score=306.78 Aligned_cols=420 Identities=18% Similarity=0.251 Sum_probs=277.3
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646 31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG 110 (509)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 110 (509)
.+++++.+++++++.+.+++|...++..... +.....+....++++ ++.+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~---~~~~~~ 58 (479)
T PRK10077 7 SSYIFSITLVATLGGLLFGYDTAVISGTVES-------------------------LNTVFVAPQNLSESA---ANSLLG 58 (479)
T ss_pred chHHHHHHHHHHHHHHhcCcccceehHhHHH-------------------------HHHHhcccccccccC---ChhHHH
Confidence 4688888899999999999988766664000 000012233334476 455889
Q ss_pred hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH------------hHHHHHHHHHHHHhhccchh
Q 040646 111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS------------TNMWIYSVLRFINGFGRATI 178 (509)
Q Consensus 111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~------------~~~~~l~~~r~l~G~~~g~~ 178 (509)
++.+++.++..++++++|+++|| +|||++++++.++++++.++++++ ++++.+++.|+++|++.|..
T Consensus 59 ~~~s~~~ig~~~~~~~~G~l~dr-~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~ 137 (479)
T PRK10077 59 FCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLA 137 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHH
Confidence 99999999999999999999999 999999999999999998888763 23678889999999999999
Q ss_pred hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.+...++++|++|+++|++++++.+.+..+|.++++.++... .+.+||+.|++.+++.++.. +..+++||
T Consensus 138 ~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~-~~~~~l~~ 216 (479)
T PRK10077 138 SMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFL-MLLYFVPE 216 (479)
T ss_pred hhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHH-HHHHcCCC
Confidence 999999999999999999999999999999999988775422 35789999999888877754 44677999
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH-HHHHH----HH
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI-MVTGF----GI 324 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~----~~ 324 (509)
+|+++..+++.+++.+..++.....+ .....++.....+.++ ...+..+... ....... ....+ +.
T Consensus 217 s~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 287 (479)
T PRK10077 217 TPRYLMSRGKQEQAEGILRKIMGNTL---ATQALQEIKHSLDHGR----KTGGKLLMFG--VGVIVIGVMLSVFQQFVGI 287 (479)
T ss_pred CcHHHHHcCCHHHHHHHHHHHcCChh---HHHHHHHHHHHHHHhh----hhhhhhcchh--HHHHHHHHHHHHHHHHhCh
Confidence 99998777777766555554432110 0000000000000000 0000011000 0011111 11111 11
Q ss_pred hHhhhccccccccCCchH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc-chh-HHHH
Q 040646 325 GMVYYGMPLGLGSLSFNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK-IWT-SVEI 399 (509)
Q Consensus 325 ~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 399 (509)
....+..|.+.++.|.+. .......++..+++.+++++++||+|||+.+..+.++.+++.+++..... +.. ....
T Consensus 288 ~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~ 367 (479)
T PRK10077 288 NVVLYYAPEIFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVAL 367 (479)
T ss_pred hHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHH
Confidence 222344466556666542 33444566778899999999999999999999888888887766654321 111 1111
Q ss_pred HHHHHHHHHHHH-HhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--------cccchhHHHHHHHHHH
Q 040646 400 GLELVAFFSACT-AFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--------RQNNFLSYGIFGLVIG 470 (509)
Q Consensus 400 ~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--------~~~~~~~~~~~~~~~~ 470 (509)
...++..++... ..+..+.++.|.+|++.|+++.|+.+....+|.++++.+.... ..+....+.+.+++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (479)
T PRK10077 368 LSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGV 447 (479)
T ss_pred HHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHH
Confidence 111122122222 2256788999999999999999999999988888876555421 2233345555565555
Q ss_pred HHHHHH-hhccCCCCCCCcc
Q 040646 471 LCGLFV-IGLPETRDTQLSD 489 (509)
Q Consensus 471 ~~~~~~-~~~~~~~~~~~~~ 489 (509)
+++++. ++.||+|+++.+|
T Consensus 448 ~~~~~~~~~~~e~~~~~~~~ 467 (479)
T PRK10077 448 LAALFMWKFVPETKGKTLEE 467 (479)
T ss_pred HHHHHHHhccccCCCCCHHH
Confidence 555544 4567887776544
No 10
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=100.00 E-value=2.1e-35 Score=294.65 Aligned_cols=397 Identities=14% Similarity=0.100 Sum_probs=269.3
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646 30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 109 (509)
+.|.++.++.++++++++.+.|+...+.. .|.+++|||+ +..+.
T Consensus 23 ~~~~~~~i~~~~~~~~~~~y~~r~~~~~~---------------------------------~~~i~~~~~~---s~~~~ 66 (467)
T PRK09556 23 WFKPFMQSYLVVFIGYLTMYLIRKNFKAA---------------------------------QNDMISTYGL---STTEL 66 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcChhhh---------------------------------hHHHHHhcCC---CHHHH
Confidence 56778888899999999999898777664 8999999999 55589
Q ss_pred chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHhhccchhhhhhee
Q 040646 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-----STNMWIYSVLRFINGFGRATIGTCAIV 184 (509)
Q Consensus 110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~~~ 184 (509)
|++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++.++ ++|++.+++.|+++|++.+...+...+
T Consensus 67 g~~~s~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 145 (467)
T PRK09556 67 GMIGLGFSITYGVGKTLVGYYADG-KNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYS 145 (467)
T ss_pred HHHHHHHHHHHHHHHhhhhhHhhc-cCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999999999999 99999999998888888777665 589999999999999999999999999
Q ss_pred eeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC---CcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCH
Q 040646 185 LSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG---SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRK 260 (509)
Q Consensus 185 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~---~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~ 260 (509)
++.||+|+++||++++++..+.++|.+++++++ ++... .+||..|.+.+++.++.+++.+++.+|+|+.. +..
T Consensus 146 ~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~---~~~ 222 (467)
T PRK09556 146 TITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL---GWG 222 (467)
T ss_pred HHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc---CCC
Confidence 999999999999999999999999999998884 44332 26999999888888877666666777776421 110
Q ss_pred HHHHHHHHHHHhhcCCccccccccCcccccccccccchhH-HHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-ccC
Q 040646 261 EEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GSL 338 (509)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 338 (509)
++ ++. . ++ ....+ +.+.+.++...... .+..++++.++...+..++.........+..|.++ +..
T Consensus 223 ~~-~~~---~----~~-~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~ 289 (467)
T PRK09556 223 KA-EEI---F----GE-PISEE----DKETESTDMTKWQIFVEYVLKNPVIWLLCFANIFLYIVRIGIDNWSPVYAFQEL 289 (467)
T ss_pred Ch-hhc---c----cC-ccchh----hhccccccCcHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 00 000 0 00 00000 00000000000111 22367777766555554444444333444456555 557
Q ss_pred CchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHH
Q 040646 339 SFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSL 415 (509)
Q Consensus 339 g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (509)
|.+..... ....++.+++.+++|+++||++||+.+.....+..+...++......+........++.++........
T Consensus 290 g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 369 (467)
T PRK09556 290 GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALGFLVFGPQLL 369 (467)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHhhHHHH
Confidence 77765443 334477889999999999999998876654443333322222222222222222222222222222222
Q ss_pred HHhhcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHhhc--------------ccchhHHHHHHHHHHHHHHHHhhc
Q 040646 416 LLIYTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAAGR--------------QNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 416 ~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
......|.+|++.++++.|+.+..+.+ |.+++|.+.+... .++...+.+++++.+++.+..+++
T Consensus 370 ~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 370 IGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 335667999999999999999999986 7689998888322 234455666666666655554433
No 11
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=100.00 E-value=6.3e-35 Score=286.04 Aligned_cols=374 Identities=13% Similarity=0.140 Sum_probs=260.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL 111 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 111 (509)
|.+|++++++++++++++.|..+.++. .|.+++|+|+ +..+.|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~l~~~~~~---s~~~~g~ 47 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFA---------------------------------GLTMGKDLGL---SATMFGL 47 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHH---------------------------------HHhhHhhcCC---CHHHHHH
Confidence 567888899999999999999999886 7899999999 4558999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG 191 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 191 (509)
+.+++.+++.+++++.|+++|| +|||+++..++++++++++++++++|++.+++.|+++|++.+...+....++.|++|
T Consensus 48 ~~s~~~~~~~~~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~ 126 (412)
T TIGR02332 48 AATLFYAAYVICGIPSNIMLAI-IGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTFWFP 126 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHHH-HHhc------CCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcC-CHHHH
Q 040646 192 KKRRGQVGSIGFFCFTLGFLSLPAIA-YINR------GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG-RKEEA 263 (509)
Q Consensus 192 ~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~------~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~-~~~~~ 263 (509)
+++|++++++++.+.++|.+++++++ ++.. ..|||+.|++.+++.++..++.++++||+|+.. +. ..++.
T Consensus 127 ~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~~ 204 (412)
T TIGR02332 127 AYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEEDK 204 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHHH
Confidence 99999999999999999999999984 4442 369999999999888877767778889998420 00 11111
Q ss_pred HHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC--Cch
Q 040646 264 VSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL--SFN 341 (509)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~ 341 (509)
+...+.... +..+.+++.+.. +.++......+++++ ++.++......++............|.++++. +.+
T Consensus 205 ~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s 277 (412)
T TIGR02332 205 KALKEMIDN--DQLTLEQPEGAF----AHAAMPQRSMLREIF-TPAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSS 277 (412)
T ss_pred HHHHHHHHh--cccccccccccc----ccccccHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 111111111 100000000000 000111122344444 34444333333333333444445566667654 444
Q ss_pred HHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHH
Q 040646 342 LYL---SVTFNALSELPASLITFFLIGKLKRKSSL-LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLL 417 (509)
Q Consensus 342 ~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
... ......++.+++.++.++++||+++|+.. .....+..+.. ++...... ............++.....+..+
T Consensus 278 ~~~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~ 355 (412)
T TIGR02332 278 NIMIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASATDH-NLIQLLGIIMASMGSFSAMAIFW 355 (412)
T ss_pred HHHhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhcCC-HHHHHHHHHHHHHHhhhhhhHHH
Confidence 333 34455578889999999999999977753 33333333332 22222222 22211111122222222234445
Q ss_pred hhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 418 IYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 418 ~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
....|.+|++.|+++.|+.+....+|++++|.+.+.
T Consensus 356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~ 391 (412)
T TIGR02332 356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGI 391 (412)
T ss_pred hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhccc
Confidence 666788999999999999999999999999999883
No 12
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=100.00 E-value=1.7e-35 Score=283.99 Aligned_cols=354 Identities=13% Similarity=0.014 Sum_probs=250.2
Q ss_pred ceecCCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040646 85 WSWDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIY 164 (509)
Q Consensus 85 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l 164 (509)
|....|.+|.+++|||+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+......+.+....++|++.+
T Consensus 7 ~~~~~~~lp~i~~~~~~---s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l 82 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDV---SKEELGLLAITYPAAFLALTIPSGLLLDR-AFKRWFLFGSLATFAAAAGRLLDPFNYEWL 82 (368)
T ss_pred HHHHHhhHHHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 44445569999999999 44589999999999999999999999999 999998766655554443333334799999
Q ss_pred HHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646 165 SVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 165 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~ 243 (509)
++.|+++|++.+. .+.....++|++|+++|++++++.+.+..+|.++++++ +.+.++.|||+.|++.++++++..++.
T Consensus 83 ~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~ 161 (368)
T TIGR00903 83 LACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV 161 (368)
T ss_pred HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999986 45555666999999999999999999999999999998 466778899999999888888777777
Q ss_pred heeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHH
Q 040646 244 RFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFG 323 (509)
Q Consensus 244 ~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (509)
++++||+|++. ++..+. ++...++++++++|..+...+..++....
T Consensus 162 ~~~lp~~p~~~---~~~~~~-------------------------------~~~~~~~~~ll~~~~~~~~~~~~~~~~~~ 207 (368)
T TIGR00903 162 LAALPALPFQA---AEGFGF-------------------------------KDAVKEFGALAGRKDLWIIGAILGFGVAL 207 (368)
T ss_pred HHHcCCCCCCC---CCCcch-------------------------------HHHHHHHHHHHcChhHHHHHHHHHHHHHH
Confidence 78899987531 000000 00012467888888876666665555555
Q ss_pred HhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCch---hHHH-HHHHHHHHHHHHHHHhccchhHHHH
Q 040646 324 IGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRK---SSLL-GFTIMSGVCSVLCVVMGKIWTSVEI 399 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
......++|.++++.+.+.. ......+..+.+.+..++++||..|| +... ....+.++....+.... ......
T Consensus 208 ~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~--~~~~~~ 284 (368)
T TIGR00903 208 FDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL--NRLALF 284 (368)
T ss_pred HHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc--ccHHHH
Confidence 55555566777777777643 44444455556666678888887654 2222 23333333333333221 222223
Q ss_pred HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhc
Q 040646 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
....+..++....++..+++.+|.+|++.|+++.|+.+..+++|+.++|.+.+....+....+.++++..+++++....+
T Consensus 285 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~~~~ 364 (368)
T TIGR00903 285 AFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIALLL 364 (368)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhC
Confidence 33333444455566778889999999999999999999999999999998887333344556666777666666655433
Q ss_pred c
Q 040646 480 P 480 (509)
Q Consensus 480 ~ 480 (509)
+
T Consensus 365 ~ 365 (368)
T TIGR00903 365 P 365 (368)
T ss_pred C
Confidence 3
No 13
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=100.00 E-value=1.6e-34 Score=285.53 Aligned_cols=376 Identities=15% Similarity=0.118 Sum_probs=246.9
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL 111 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 111 (509)
+.+++.+...+++++++++|....++. .|.+.+||+.+..+..+.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~l~~~~~~~~~~~~~~~~ 64 (432)
T PRK10406 18 RRRIWAIVGASSGNLVEWFDFYVYSFC---------------------------------SLYFAHIFFPSGNTTTQLLQ 64 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCCCCchHHHHH
Confidence 455667778888999999999998886 78888888632212223333
Q ss_pred ---hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhccchhhh
Q 040646 112 ---PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGRATIGT 180 (509)
Q Consensus 112 ---~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~ 180 (509)
+.+..+++..++++++|+++|| +|||+++..+.++++++++++++++++. .+++.|+++|++.|..++
T Consensus 65 ~~~~~~~~~~~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~ 143 (432)
T PRK10406 65 TAGVFAAGFLMRPIGGWLFGRIADK-HGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYG 143 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHh
Confidence 4444555556999999999999 9999999999999999999999988764 689999999999999999
Q ss_pred hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
...+++.|++|+++|+++.++...+...|.++++++...+ ..+|||++|++.+++.++. +..+..+||+|
T Consensus 144 ~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~ 222 (432)
T PRK10406 144 TSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS 222 (432)
T ss_pred hHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 9999999999999999999999888888888877664322 2579999999988877764 34556678876
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH-HHHHhHhhhc
Q 040646 252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT-GFGIGMVYYG 330 (509)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~ 330 (509)
++.. +. .+ +..+++++++++..+...+...+. ..........
T Consensus 223 ~~~~------~~----------~~---------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (432)
T PRK10406 223 QQET------RA----------LK---------------------EAGSLKGLWRNRRAFIMVLGFTAAGSLCFYTFTTY 265 (432)
T ss_pred hHHH------hh----------hc---------------------ccccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4210 00 00 011366777776544333322221 2222222233
Q ss_pred ccccc-ccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH-h-ccchhHHHHHHHHH
Q 040646 331 MPLGL-GSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV-M-GKIWTSVEIGLELV 404 (509)
Q Consensus 331 ~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~ 404 (509)
.|.++ +..|.+..... .+..+...++.++.|+++||++||+.+.....+.++....+.. . ..........+..+
T Consensus 266 lp~~l~~~~g~s~~~~~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (432)
T PRK10406 266 MQKYLVNTAGMHANVASGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMC 345 (432)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 44444 44676654433 3334556677788899999999999877665544333322221 1 11122222222222
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHhhc-cc-chhHHHHHHHHHHHHHHHHhhc
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAAGR-QN-NFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
..+..+...+..+.+.+|.+|++.|+++.|+.+..+++ .+...|.+.+... .+ ....+...++..+++.+..+++
T Consensus 346 ~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 346 ALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 22333333455678889999999999999999887654 2334666655221 12 2233444444444444444443
No 14
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=100.00 E-value=3.3e-34 Score=266.10 Aligned_cols=369 Identities=17% Similarity=0.170 Sum_probs=284.7
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL 111 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 111 (509)
+..+..++.+.++.|..+..-+.+.-+ +|++.+||++ +..+.|+
T Consensus 9 ~~~~~~l~aLa~~~F~igttEfv~~gL---------------------------------Lp~iA~dl~v---s~~~aG~ 52 (394)
T COG2814 9 KPMWLALLALALAAFAIGTTEFVPVGL---------------------------------LPPIAADLGV---SEGAAGQ 52 (394)
T ss_pred ccchHHHHHHHHHHHHHHhHHHHHHhc---------------------------------hHHHHHHcCC---CHHHHHH
Confidence 445666677888888888877777775 9999999999 4458999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG 191 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 191 (509)
+.|.|.+++.+++|+...+.|| +.||++++..+.++.++++++++++||+.++++|++.|++.|..++...++..+..|
T Consensus 53 lis~yAl~~ai~ap~l~~lt~r-~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp 131 (394)
T COG2814 53 LITAYALGVALGAPLLALLTGR-LERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP 131 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHH
Q 040646 192 KKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI 270 (509)
Q Consensus 192 ~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~ 270 (509)
+++|++++++...+.+++.++|.++| ++.+.+|||..|++.+.++++..+..+..+| |+ ++.+
T Consensus 132 p~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~-----~~~~--------- 195 (394)
T COG2814 132 PGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PS-----EISG--------- 195 (394)
T ss_pred ccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Cc-----cCCC---------
Confidence 99999999999999999999999995 7778899999999999999998888888888 21 0000
Q ss_pred HhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcc-ccccccCCchH---HHHH
Q 040646 271 STSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGM-PLGLGSLSFNL---YLSV 346 (509)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~---~~~~ 346 (509)
+.+....+..+++++|..+..+...++...+....|.++ |++.+..|++. ....
T Consensus 196 ----------------------~~~~~~~~~~~~l~~p~v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~L 253 (394)
T COG2814 196 ----------------------SLPGPLRTLLRLLRRPGVLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVSLVL 253 (394)
T ss_pred ----------------------CCCcchhHHHHHhcCchHHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHHHHH
Confidence 000111235668889988887777777777666655554 66666677664 3455
Q ss_pred HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch
Q 040646 347 TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT 426 (509)
Q Consensus 347 ~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (509)
...+++.++|++++|++.|| +.|+.+.....+.++..+.+.+...+. +......++.++..............+ .-+
T Consensus 254 l~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~-~~~~~~~~~wg~a~~~~~~~~~~~~a~-~~p 330 (394)
T COG2814 254 LAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASP-ALALALLFLWGFAFSPALQGLQTRLAR-LAP 330 (394)
T ss_pred HHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHhhhhhhHHHHHhcc-cCC
Confidence 67789999999999999999 888888888777777777776655443 333333333444444444444555555 334
Q ss_pred hhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHhh
Q 040646 427 CVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVIG 478 (509)
Q Consensus 427 ~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (509)
+.++.+.+++....++|..+|..+.+. ...+........+.+.+++.++.++
T Consensus 331 ~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 331 DAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 678899999888888888877777772 2234444445555555555544443
No 15
>PRK12307 putative sialic acid transporter; Provisional
Probab=100.00 E-value=3.2e-34 Score=283.92 Aligned_cols=363 Identities=18% Similarity=0.204 Sum_probs=261.8
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccc
Q 040646 29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108 (509)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (509)
+-+++|+..+..+.++++.++++.....+. .|.+++|+|++ +.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~i~~~~~~s---~~~ 54 (426)
T PRK12307 11 EITRPQKNALFSAWLGYVFDGFDFMLIFYI---------------------------------MYLIKADLGLT---DME 54 (426)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhHHHHHHHH---------------------------------HHHHHHHhCCC---HHH
Confidence 456899998899999999999999888775 88999999994 458
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
.+++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++++++++++.++++|++.|++.+...+....++.|
T Consensus 55 ~~~~~~~~~~~~~l~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~ 133 (426)
T PRK12307 55 GAFLATAAFIGRPFGGALFGLLADK-FGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE 133 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 8999999999999999999999999 999999999999999999999999999999999999999999999999999999
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHH
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSII 267 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~ 267 (509)
++|+++|+++.++...+..+|.++++.+ +.+.+..+||+.|++..+..++ .+......||++++...+.
T Consensus 134 ~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~-~~~~~~~~p~~~~~~~~~~--------- 203 (426)
T PRK12307 134 SWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLL-VIYIRARAPESKEWEEAKL--------- 203 (426)
T ss_pred hCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH-HHHHHHHCCCChHHHHhhh---------
Confidence 9999999999999999999999999887 5677778999999886544433 2233333455543211000
Q ss_pred HHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH---hHhhhccccccccCCchHHH
Q 040646 268 KSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI---GMVYYGMPLGLGSLSFNLYL 344 (509)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~ 344 (509)
.. ++ + +.+...+....+++++++++.++.........+... .......|.++++.|.+...
T Consensus 204 ---~~-~~--~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 267 (426)
T PRK12307 204 ---SG-KG--K----------HSQSAWSVFSLSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGV 267 (426)
T ss_pred ---hc-cc--c----------ccccchhhhhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Confidence 00 00 0 000000111234677888776554333222221111 11233456666666776544
Q ss_pred H---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH-HHHHHHhHHHHhhc
Q 040646 345 S---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF-FSACTAFSLLLIYT 420 (509)
Q Consensus 345 ~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 420 (509)
. .....++.+++.++.+++.||++||+.+..+.++..+..+.+......... .......+. +......+....++
T Consensus 268 ~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 346 (426)
T PRK12307 268 VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYL-LLGACLFGLMATNVGVGGLVPKFL 346 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHccccHH-HHHHHHHHHHHhcccHhHHHHHHH
Confidence 3 344457788999999999999999999888777666555444433322221 111111111 11112234556778
Q ss_pred ccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc
Q 040646 421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR 455 (509)
Q Consensus 421 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~ 455 (509)
.|.+|++.|++++|+.+....+|+.++|.+.+...
T Consensus 347 ~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~ 381 (426)
T PRK12307 347 YDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLG 381 (426)
T ss_pred HHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988433
No 16
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=100.00 E-value=5.2e-34 Score=280.61 Aligned_cols=351 Identities=18% Similarity=0.172 Sum_probs=262.6
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646 31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG 110 (509)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 110 (509)
.|++|.++.++.+..+.+++|....... .|.+.+|+|+ ++.+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~---s~~~~g 53 (406)
T PRK11551 10 SSRLALTIGLCFLVALLEGLDLQSAGVA---------------------------------APRMAQEFGL---DVAQMG 53 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCC---CHHHHH
Confidence 4788999999999999999998777775 7899999999 445899
Q ss_pred hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646 111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV 190 (509)
Q Consensus 111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 190 (509)
++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++
T Consensus 54 ~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~ 132 (406)
T PRK11551 54 WAFSAGILGLLPGALLGGRLADR-IGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSEAV 132 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHH
Q 040646 191 GKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKS 269 (509)
Q Consensus 191 ~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 269 (509)
|+++|++++++.+.+..+|..+++.++ .+....+||+.|++.++..++..+....++||+|++...+++.++.++
T Consensus 133 ~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---- 208 (406)
T PRK11551 133 GPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRAP---- 208 (406)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhhh----
Confidence 999999999999999999999999985 566778999999998877666555566678998764322111000000
Q ss_pred HHhhcCCccccccccCcccccccccccchhHHHHHHhchH---HHHHHHHHHHHHHHHhHhhhccccccccCCchHHH--
Q 040646 270 ISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW---ALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL-- 344 (509)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 344 (509)
..+..++++. .+......+.............|.+.++.|.+...
T Consensus 209 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~ 258 (406)
T PRK11551 209 ------------------------------VLRALFGEGRATATLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAG 258 (406)
T ss_pred ------------------------------hHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhh
Confidence 0111111111 11111111111122222333356666666766443
Q ss_pred -HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646 345 -SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL 423 (509)
Q Consensus 345 -~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
......++.+++.++.|++.||+|||+.+..+.+...++...+.... .........++.++......+...++..|.
T Consensus 259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (406)
T PRK11551 259 LVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP--SFAGMLLAGFAAGLFVVGGQSVLYALAPLF 336 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 33445577889999999999999999988876666555555444432 222222333333444445567778899999
Q ss_pred cchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646 424 FPTCVRNSAISMVRQALVFGGVFSPVLVAAG 454 (509)
Q Consensus 424 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~ 454 (509)
+|++.|+++.|+.+....+|..++|.+.+..
T Consensus 337 ~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l 367 (406)
T PRK11551 337 YPTQVRGTGVGAAVAVGRLGSMAGPLLAGQL 367 (406)
T ss_pred cchhhhhhhhhHHHHhhhHHHHHHhhhHhhh
Confidence 9999999999999999999999999999843
No 17
>PRK11663 regulatory protein UhpC; Provisional
Probab=100.00 E-value=6.4e-34 Score=281.31 Aligned_cols=392 Identities=13% Similarity=0.087 Sum_probs=262.8
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646 31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG 110 (509)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 110 (509)
+++++.++..+.++++....+....... .|.+.+++|+ +..+.|
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~g~---s~~~~g 61 (434)
T PRK11663 18 RYWRRHILITMYLGYALFYFTRKSFNAA---------------------------------MPEMLADLGL---SRSDIG 61 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHh---------------------------------hHHHHHhcCC---CHHHHH
Confidence 4567777777778888777777666554 7899999999 445899
Q ss_pred hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646 111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV 190 (509)
Q Consensus 111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 190 (509)
++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++++++++++.+++.|++.|++.|...+...+++.|++
T Consensus 62 ~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~ 140 (434)
T PRK11663 62 LLATLFYITYGVSKFVSGIVSDR-SNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWY 140 (434)
T ss_pred HHHHHHHHHHHHHHhhhhHHHhh-cCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhC
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHH
Q 040646 191 GKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKS 269 (509)
Q Consensus 191 ~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~ 269 (509)
|+++|++++++++.+.++|..+++.+ +.+.+..|||+.|++.+++.++..+...+++||+|++...+...++.
T Consensus 141 ~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~------ 214 (434)
T PRK11663 141 SRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWR------ 214 (434)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccc------
Confidence 99999999999999999999999988 67777889999999988877765555556778877532100000000
Q ss_pred HHhhcCCccccccccCcccccccccccchhH-HH-HHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-ccCCchHHHH-
Q 040646 270 ISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IK-ILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLYLS- 345 (509)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~- 345 (509)
+ +. ++...+.+. ++.+..+ ++ ..++++..+....................|.++ ++.|.+....
T Consensus 215 -----~--~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~ 282 (434)
T PRK11663 215 -----H--DA----LELAQQQEG-AGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTAN 282 (434)
T ss_pred -----c--cc----cccchhccc-cCCChhhhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 0 00 000000000 0001111 11 245566555444433333333333333445555 5567765444
Q ss_pred --HHHHHhhhhhHHHHHHHHhhhc--CchhHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q 040646 346 --VTFNALSELPASLITFFLIGKL--KRKSSL-LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYT 420 (509)
Q Consensus 346 --~~~~~~~~~~~~~~~g~l~dr~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
.....++.+++.++.|+++||+ ++|+.. ........+....+...+...........+..++.............
T Consensus 283 ~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 362 (434)
T PRK11663 283 SAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQAACFFTIGFFVFGPQMLIGMAA 362 (434)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3445578889999999999998 333332 22222222222222222222222221222222221111222334567
Q ss_pred ccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646 421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 421 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
.|.+|++.|+++.|+.+....+|..++|.+.+.. ..+....+.+.+++.+++++..+
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~ 421 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL 421 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999988832 23445566666666655555443
No 18
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=100.00 E-value=1.7e-34 Score=290.49 Aligned_cols=385 Identities=21% Similarity=0.278 Sum_probs=280.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLST 187 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 187 (509)
+.+++.+...++..++++++|+++|+ +|||+.++++.+++.++++++++++|+++++++|++.|+|.|......+.|++
T Consensus 90 ~~s~~~s~~~lga~~g~l~~g~l~d~-~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~s 168 (513)
T KOG0254|consen 90 RQGLLTSILNLGALVGSLLAGRLGDR-IGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYIS 168 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHh
Confidence 45999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred eeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646 188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGS--SWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS 265 (509)
Q Consensus 188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 265 (509)
|..|++.||...+..+....+|..++..++....+. +||..+.+..+++++..+. .+++||+|+|+.++++.+++++
T Consensus 169 Eiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~ 247 (513)
T KOG0254|consen 169 EIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKR 247 (513)
T ss_pred hcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHH
Confidence 999999999999999999999999997777776654 8999999999999997766 8999999999999999999999
Q ss_pred HHHHHHhhcCCccccccccCccc--ccccccccchhHHHHHHhchHHHHHHHHHH-HHHH----HHhHhhhccccccccC
Q 040646 266 IIKSISTSENQRSLIMDFNNVSF--EQETWNVDLYSAIKILVEKKWALRRLSAIM-VTGF----GIGMVYYGMPLGLGSL 338 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~ 338 (509)
.+.++.... +.+...+.++.+. ..+....+....++++++ |..++.....+ +..+ +.+...|+.+.+++..
T Consensus 248 ~l~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~ 325 (513)
T KOG0254|consen 248 SLKRLRGLS-PEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSA 325 (513)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhc
Confidence 999987622 1222222221111 001111111113445554 33334333332 2222 3344445556667766
Q ss_pred Cch-H-HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc----------hhHHHHHHHHHHH
Q 040646 339 SFN-L-YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI----------WTSVEIGLELVAF 406 (509)
Q Consensus 339 g~~-~-~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 406 (509)
|.+ . .....+.++..+++.+++.++.||+|||++++.+...+.++.+++...... ..+..+....+..
T Consensus 326 g~~~~~~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 405 (513)
T KOG0254|consen 326 GLKSDTFLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFI 405 (513)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHH
Confidence 665 3 556677778889999999999999999999999999999888877653211 0111111111111
Q ss_pred -HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH-hhccc-chhHHHHHHHHHHHHHH--HHhhccC
Q 040646 407 -FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA-AGRQN-NFLSYGIFGLVIGLCGL--FVIGLPE 481 (509)
Q Consensus 407 -~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~-~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~ 481 (509)
....+..++.+.+.+|.+|.+.|+.+.++....+.+.+.+-..... ..... ....+..++.++.+... +.+++||
T Consensus 406 ~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pE 485 (513)
T KOG0254|consen 406 FSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPE 485 (513)
T ss_pred HHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEccc
Confidence 2222334677889999999999999999999888777665433332 11111 23445555554444444 4578899
Q ss_pred CCCCCCcccHHHHHH
Q 040646 482 TRDTQLSDTMDEEEY 496 (509)
Q Consensus 482 ~~~~~~~~~~~~~~~ 496 (509)
+|+++++|.++...+
T Consensus 486 Tkg~sleei~~~~~~ 500 (513)
T KOG0254|consen 486 TKGLTLEEINELFEE 500 (513)
T ss_pred CCCCcHHHHHHHHHc
Confidence 999998876654443
No 19
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=100.00 E-value=3.6e-34 Score=288.48 Aligned_cols=394 Identities=21% Similarity=0.265 Sum_probs=261.2
Q ss_pred Ccceeeeecccc-----ccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---HHHH
Q 040646 92 HTSIISEWDLEC-----ASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---NMWI 163 (509)
Q Consensus 92 ~~~i~~~~~~~~-----~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~ 163 (509)
.|.+..+++.+. .+..+.+++.+++.++..++++++|+++|| +|||++++++.++++++.+++.+.+ +++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (481)
T TIGR00879 51 LALPAFEFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDR-FGRKKSLLIIALLFVIGAILMGLAAFALSVEM 129 (481)
T ss_pred hhcHHHHHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence 566666766641 125689999999999999999999999999 9999999999999999999986644 4668
Q ss_pred HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH---HH-hcCCcchHHHHHHHhhHHHH
Q 040646 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA---YI-NRGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~---~~-~~~~~wr~~f~~~~~~~~~~ 239 (509)
+++.|++.|++.+...+...+++.|++|+++|++++++++.+..+|.++++.++ .. ....+||+.|++.++..++.
T Consensus 130 ~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~ 209 (481)
T TIGR00879 130 LIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLL 209 (481)
T ss_pred HHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 33 35679999999966666554
Q ss_pred HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCcccccc-ccCcccccccccccchhHHHHHHhch--HHHHHHHH
Q 040646 240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD-FNNVSFEQETWNVDLYSAIKILVEKK--WALRRLSA 316 (509)
Q Consensus 240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 316 (509)
++..+++||+|++...+++.++..+..++.....+++....+ .+......+.+.+.....++++++.. ..+..++.
T Consensus 210 -~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (481)
T TIGR00879 210 -FLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLG 288 (481)
T ss_pred -HHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHH
Confidence 455677899998876666655544443333221110000000 00000000000000011123333221 11222332
Q ss_pred HHHHHHH----HhHhhhccccccccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646 317 IMVTGFG----IGMVYYGMPLGLGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV 389 (509)
Q Consensus 317 ~~~~~~~----~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~ 389 (509)
.++.++. .....+..|.+.++.|.+.. .......++.+++.++.+++.||++||+.+..+.++.+++.+++.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 368 (481)
T TIGR00879 289 VVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI 368 (481)
T ss_pred HHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 2222222 22234445666666777653 3344455778889999999999999999988887777777666552
Q ss_pred h---ccch-----hHHHHHHHHHHHHHHH-HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccc
Q 040646 390 M---GKIW-----TSVEIGLELVAFFSAC-TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNN 458 (509)
Q Consensus 390 ~---~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~ 458 (509)
. .... .........+...+.+ ...+....+..|.+|++.|+++.++.+....+|++++|.+.+.. ..+.
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~ 448 (481)
T TIGR00879 369 LGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGV 448 (481)
T ss_pred HhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1 1111 1111111122222222 22355667789999999999999999999999999999888732 2344
Q ss_pred hhHHHHHHHHHHHHHHHH-hhccCCCCCCC
Q 040646 459 FLSYGIFGLVIGLCGLFV-IGLPETRDTQL 487 (509)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 487 (509)
...+.+.++++++++++. ++.||+++++.
T Consensus 449 ~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 449 GGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred cceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 455666666666666554 45577665543
No 20
>PRK09952 shikimate transporter; Provisional
Probab=100.00 E-value=6.9e-33 Score=273.91 Aligned_cols=381 Identities=17% Similarity=0.138 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCc-ceeeee--ccccccccc
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHT-SIISEW--DLECASSLI 108 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~-~i~~~~--~~~~~~~~~ 108 (509)
.++++.+....++.+++++|.....+. .| .+.+++ +++..
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~~~~~~~~~~~~~~---- 60 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGIT---------------------------------AALVFNREFFPQVSPA---- 60 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhcCCCCCcH----
Confidence 355667788888999999999888874 33 234444 44322
Q ss_pred cchhH-----HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhcc
Q 040646 109 KGLPA-----SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGR 175 (509)
Q Consensus 109 ~~~~~-----s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~ 175 (509)
.+++. ++.+++..+++++.|+++|| +|||+++..+.++++++++++++++|++ .+++.|+++|++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~ 139 (438)
T PRK09952 61 MGTLAAFATFGVGFLFRPLGGVVFGHFGDR-LGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAV 139 (438)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34443 35567788999999999999 9999999999999999999999999987 5889999999999
Q ss_pred chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHh--------cCCcchHHHHHHHhhHHHHHHHhhee
Q 040646 176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN--------RGSSWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~--------~~~~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
|..++....++.|++|+++|++..+....+..+|.+++..+. .+. .++|||++|++.+++.++ .+.....
T Consensus 140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~-~~~l~~~ 218 (438)
T PRK09952 140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI-ALWVRNG 218 (438)
T ss_pred cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH-HHHHHHh
Confidence 999999999999999999999999999999999998887663 332 257999999998877655 3445566
Q ss_pred ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH-HHHHHHHh
Q 040646 247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI-MVTGFGIG 325 (509)
Q Consensus 247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~ 325 (509)
+||+|+|...+++.++. + ++....+.+++++..+...... +...+...
T Consensus 219 ~~es~~~~~~~~~~~~~-----------~--------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 267 (438)
T PRK09952 219 MEESAEFEQQQHEQAAA-----------K--------------------KRIPVIEALLRHPGAFLKIIALRLCELLTMY 267 (438)
T ss_pred CCCChhHHHHHhhcccc-----------c--------------------ccCCHHHHHHHchHHHHHHHHHHHHHHHHHH
Confidence 78887653221110000 0 0000122344555433332221 11122222
Q ss_pred Hhhhccccc-cccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh--ccchhHHHH
Q 040646 326 MVYYGMPLG-LGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM--GKIWTSVEI 399 (509)
Q Consensus 326 ~~~~~~~~~-~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 399 (509)
......|.+ .+..|.+... ...+.++..+++.++.|+++||+|||+.+..+.++..++...+... ..+.....+
T Consensus 268 ~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (438)
T PRK09952 268 IVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVF 347 (438)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 222223333 3445655442 2334456677788899999999999998887766555443333221 112222222
Q ss_pred HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHHhh-c---ccchhHHHHHHHHHHHHHH
Q 040646 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVAAG-R---QNNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~~~-~---~~~~~~~~~~~~~~~~~~~ 474 (509)
...++..++.+...+..+++..|.+|++.|+++.++.+... .+|+.++|.+.+.. . .++...+...+++.+++.+
T Consensus 348 ~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v 427 (438)
T PRK09952 348 FSIMLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAM 427 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH
Confidence 22233334445556677889999999999999999976665 58888999888732 1 1233445555555566655
Q ss_pred HHhhccCC
Q 040646 475 FVIGLPET 482 (509)
Q Consensus 475 ~~~~~~~~ 482 (509)
..+.++++
T Consensus 428 ~~~~~~~~ 435 (438)
T PRK09952 428 TALLMKDN 435 (438)
T ss_pred HHHHcccc
Confidence 55555553
No 21
>PRK03545 putative arabinose transporter; Provisional
Probab=100.00 E-value=5.5e-33 Score=271.41 Aligned_cols=341 Identities=13% Similarity=0.049 Sum_probs=244.3
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+|+|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++++++++++|++.+++.|+++
T Consensus 32 ~~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~ 107 (390)
T PRK03545 32 LSDIAQSFHM---QTAQVGLMLTIYAWVVALMSLPLMLLTSN-VERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGI 107 (390)
T ss_pred hHHHHhHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7899999999 45589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|+++++++..+.++|.+++|+++ .+.+..|||+.|++.++++++..+.....+||.
T Consensus 108 G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 108 AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999998999999999999999999999999999999999999984 666778999999999988877655555556664
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH-hhh
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM-VYY 329 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (509)
|+ ++.+ ...+.++.+++|.++......++....... ..+
T Consensus 188 ~~-----~~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (390)
T PRK03545 188 PS-----EHSG-----------------------------------SLKSLPLLFRRPALVSLYLLTVVVVTAHFTAYSY 227 (390)
T ss_pred CC-----CCcc-----------------------------------hHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 0000 011345677787765544443333332222 223
Q ss_pred ccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
..++..+..|.+.... ....+++.+++.++.+++.||++||.... +..+..++...+..... +.+......++.+
T Consensus 228 ~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~g 305 (390)
T PRK03545 228 IEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAAN-SEWHLSVLSIFWG 305 (390)
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhc-hHHHHHHHHHHHH
Confidence 3344444456654433 34455788999999999999999876544 33333333333322222 2222222333333
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHhhc
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
++.....+.......+..| +.|++++|+.+....+|..++|.+.+. ...+....+.+.+++.+++.+.....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 379 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILI 379 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHH
Confidence 3333333445566667766 578999999999999999999999883 33444556666666666655554433
No 22
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=100.00 E-value=6.8e-33 Score=275.47 Aligned_cols=410 Identities=13% Similarity=0.078 Sum_probs=261.6
Q ss_pred cccCCCChHHHHhhhhCCCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCC
Q 040646 12 DLESRPSLGETIERCIGDFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQA 91 (509)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~ 91 (509)
+|+..++.+|+.+. +.|++|.++..+++.......+.....+.
T Consensus 9 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 51 (452)
T PRK11273 9 PHKARLPAAEIDPT----YRRLRWQIFLGIFFGYAAYYLVRKNFALA--------------------------------- 51 (452)
T ss_pred cCcccCChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------------------
Confidence 34555565555433 33566766666666666666666555553
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----NMWIYSVL 167 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~ 167 (509)
.|.+.++ |+ +..+.+++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.+++++++ +++.+++.
T Consensus 52 ~p~l~~~-g~---s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr-~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 126 (452)
T PRK11273 52 MPYLVEQ-GF---SRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVL 126 (452)
T ss_pred hHHHHHc-CC---CHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHH
Confidence 6778877 88 45589999999999999999999999999 9999999999999999999888764 78889999
Q ss_pred HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHH-HHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646 168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGF-LSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRF 245 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 245 (509)
|++.|++.+...+.....+.|++|+++|++++++++.+..+|. +.+++++ ......+||+.|++.+++.++..++..+
T Consensus 127 ~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~ 206 (452)
T PRK11273 127 LFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFA 206 (452)
T ss_pred HHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888888888999999999999999999999886 4556553 3333458999999998888776667777
Q ss_pred eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhH-HHHHHhchHHHHHHHHHHHHHHHH
Q 040646 246 LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IKILVEKKWALRRLSAIMVTGFGI 324 (509)
Q Consensus 246 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~ 324 (509)
++||+|+....+ +.++.+ . +. +.+.+ .+ +.++.+.... .+.+++++.++...+..++.....
T Consensus 207 ~~~~~~~~~~~~-~~~~~~-------~-~~----~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 269 (452)
T PRK11273 207 MMRDTPQSCGLP-PIEEYK-------N-DY----PDDYN---EK-HEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLR 269 (452)
T ss_pred HccCCHhhcCCC-Chhhhh-------h-cc----ccccc---cc-cCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHH
Confidence 889887531100 111100 0 00 00000 00 0000001111 123566777665555555555444
Q ss_pred hHhhhcccccccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhc--CchhHH-HHHHHHHHHHHHHHHHhccchhHH
Q 040646 325 GMVYYGMPLGLGS-LSFNLYLS---VTFNALSELPASLITFFLIGKL--KRKSSL-LGFTIMSGVCSVLCVVMGKIWTSV 397 (509)
Q Consensus 325 ~~~~~~~~~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~--gr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
.......|.++++ .+.+.... ..+..++.+++.++.|+++||+ +||... .....+..++...+..........
T Consensus 270 ~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 349 (452)
T PRK11273 270 YGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNPAGNPTV 349 (452)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhcccChHH
Confidence 4444555666654 56654443 3344577788999999999999 455432 222222233332222222222222
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH-HHHHHHh--hcccchhHHHHHHHHHHHHHH
Q 040646 398 EIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF-SPVLVAA--GRQNNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i-~p~~~~~--~~~~~~~~~~~~~~~~~~~~~ 474 (509)
.....+..+............+..|.+|++.|+++.|+.+....+|+.+ +|.+.+. ...++...|.+.+++++++++
T Consensus 350 ~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~ 429 (452)
T PRK11273 350 DMACMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 429 (452)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 2111122222221222233456779999999999999999888887654 6877762 223455566666666666666
Q ss_pred HHhhcc
Q 040646 475 FVIGLP 480 (509)
Q Consensus 475 ~~~~~~ 480 (509)
+..++.
T Consensus 430 ~~~~~~ 435 (452)
T PRK11273 430 LLIVVM 435 (452)
T ss_pred HHHHHh
Confidence 554443
No 23
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-34 Score=263.79 Aligned_cols=425 Identities=19% Similarity=0.226 Sum_probs=294.8
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646 30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 109 (509)
..+++...+.+.+.+.|.|++|.++++.+.. ..++.|.... ...=+. .+...
T Consensus 35 ~qw~~fk~i~iAG~GfftDsYDlF~I~lVt~---------------------il~~lY~~~~----~~~g~~---ps~i~ 86 (538)
T KOG0252|consen 35 LQWKHFKAIIIAGMGFFTDSYDLFSISLVTK---------------------ILGYLYYHGD----ESGGHY---PSGVL 86 (538)
T ss_pred hhHHHHHHHHHhhhhhcccchhhhhHHHHHH---------------------HHHHHhcCCC----CCCCcC---CchHH
Confidence 4577778889999999999999999988611 0111111110 000011 22356
Q ss_pred chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHhhccchhhhhh
Q 040646 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN-------MWIYSVLRFINGFGRATIGTCA 182 (509)
Q Consensus 110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~-------~~~l~~~r~l~G~~~g~~~~~~ 182 (509)
+.+..+..+|..+||+++|++.|| +|||+++...+++..+++++++++.. .+++.+.|++.|+|.|+-+|..
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~-~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDK-FGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-hcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 888899999999999999999999 99999999999999999998887532 6789999999999999999999
Q ss_pred eeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc--------C--------CcchHHHHHHHhhHHHHHHHhhee
Q 040646 183 IVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR--------G--------SSWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 183 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~--------~--------~~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
.+..+|...+++||...+...+..+.|.+.|.+++.++. . .=||..+.+.++++++.. ..++.
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~l-y~Rl~ 244 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVL-YFRLK 244 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 999999999999999999998888888888777653321 1 239999999999998854 67788
Q ss_pred ecCchHHHHhcC-CHHHHHHHHHHHHhhcCCccccccccCcccccc--cccccchhHHHHHHhchHHHHHHHHHHHHHHH
Q 040646 247 VRESPRWLFIQG-RKEEAVSIIKSISTSENQRSLIMDFNNVSFEQE--TWNVDLYSAIKILVEKKWALRRLSAIMVTGFG 323 (509)
Q Consensus 247 ~~esp~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (509)
+|||++|..... +.+.+. .+. .+....+.++.+.... ..+++....+...+..+ .-+.++..+..|+.
T Consensus 245 M~Et~~Y~al~~~~~~~a~---~d~-----~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFl 315 (538)
T KOG0252|consen 245 MPETARYTALVSKKLKQAA---GDM-----KKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFL 315 (538)
T ss_pred CCcchhHHHHhhcCHhhhh---hcc-----ccccccccchhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHh
Confidence 999998753322 222221 111 1111111111111110 11111112233344333 34677888888998
Q ss_pred HhHhhhccccccc----cCCchH----H--------HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646 324 IGMVYYGMPLGLG----SLSFNL----Y--------LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC 387 (509)
Q Consensus 324 ~~~~~~~~~~~~~----~~g~~~----~--------~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~ 387 (509)
....+|...++.. ..|..+ . ....+.....++|.++...++|++|||+..+.++.++.+..+.+
T Consensus 316 lDiafy~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~ 395 (538)
T KOG0252|consen 316 LDIAFYGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVI 395 (538)
T ss_pred hhhhhhccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHH
Confidence 8888877654432 233221 1 11233335566788888899999999999999999999888877
Q ss_pred HHhccch---hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-------ccc
Q 040646 388 VVMGKIW---TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-------RQN 457 (509)
Q Consensus 388 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-------~~~ 457 (509)
....++. ....+...+..+++..+.......+.+|.+|++.|+++.|+....+-.|++++....... ..+
T Consensus 396 ~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g 475 (538)
T KOG0252|consen 396 AGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIG 475 (538)
T ss_pred cCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCcccc
Confidence 7644321 111122222233333344445678899999999999999999999999999988887632 234
Q ss_pred chhHHHHHHHHHHHHHHHHhhccCCCCCCCcccHHH
Q 040646 458 NFLSYGIFGLVIGLCGLFVIGLPETRDTQLSDTMDE 493 (509)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (509)
....+.+++.+.+++.++.+++||+++++++|..++
T Consensus 476 ~~~v~~i~~~~~~~gi~~T~l~pEtk~~~leei~~e 511 (538)
T KOG0252|consen 476 VRNVFIILAGCMLLGILFTLLIPETKGKSLEEISNE 511 (538)
T ss_pred chHHHHHHHHHHHHhHheeEEeecccccCHHHhcCh
Confidence 556788899999888888889999999998876433
No 24
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=100.00 E-value=7.1e-33 Score=269.95 Aligned_cols=342 Identities=11% Similarity=0.064 Sum_probs=247.3
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
.|.+.+|+|+ ++.+.|++.+++.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus 26 ~~~~~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~G~l~d~-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (377)
T TIGR00890 26 APPLGRYFGV---GVTAVAIWFTLLLIGLAMSMPVGGLLADK-FGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLA 101 (377)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-cCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999 55589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+.....+.|++| ++|+++.++...+.++|..+++.+ +.+.+..+||+.|++.+++.++..+..+++++|+
T Consensus 102 g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (377)
T TIGR00890 102 SAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYP 180 (377)
T ss_pred hHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 99999888888888888887 679999999999999998765544 6777778999999999988888766666666665
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
|+. .+.+ ++ +.+++..+.++.++++..+......+...+........
T Consensus 181 ~~~----~~~~------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (377)
T TIGR00890 181 PGQ----LIKT------------NI-----------------EVSVKDYTVWEMLRTPQFWVLYLSFFLNAVSGLLLIGL 227 (377)
T ss_pred chh----cccc------------Cc-----------------ccchhhhhHHHHHcCccHHHHHHHHHHHhHHHHHHHHH
Confidence 421 0000 00 00001123456777776544433333332222222222
Q ss_pred cccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
.+.+.++.+.+... ...+..+..+++.++.+++.||++||+.+..+..+..++.+.+................+.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 307 (377)
T TIGR00890 228 YKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALVFF 307 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHHHH
Confidence 23344556655433 344555778889999999999999999988888777777666655433222222222233334
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHH
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGL 471 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~ 471 (509)
..+...+....+..|.+|+++|+++.|+.+....+|..++|.+.+.. ..++...+.+.+++.++
T Consensus 308 ~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 308 TWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 44444456677889999999999999999999999999999988833 23344445555544443
No 25
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=7.4e-39 Score=319.42 Aligned_cols=380 Identities=28% Similarity=0.460 Sum_probs=277.1
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhccchhhhhhe
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---NMWIYSVLRFINGFGRATIGTCAI 183 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~~l~~~r~l~G~~~g~~~~~~~ 183 (509)
.+.+++.+..++|..+|++++|+++|| +|||+.+.++.++..+++++.++++ |++.+.++|++.|++.|...+...
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~-~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~ 124 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADR-YGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSP 124 (451)
T ss_pred HHHHHHHHHHHhhhccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999999 9999999999999999999999999 999999999999999999999999
Q ss_pred eeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc----CCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCC
Q 040646 184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR----GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGR 259 (509)
Q Consensus 184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 259 (509)
.++.|..|+++|++..++.+.++.+|.+++..+++... +.+||..+.+.++++++.. +...++||||+|+..++|
T Consensus 125 ~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~-~~~~~~pESP~wL~~~~~ 203 (451)
T PF00083_consen 125 IYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVL-LLRFFLPESPRWLLSKGR 203 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccceeccccc
Confidence 99999999999999999999999999999888764332 2469999999999988754 556889999999999999
Q ss_pred HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHH-----HHhHhhhccccc
Q 040646 260 KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGF-----GIGMVYYGMPLG 334 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 334 (509)
.+|+++.+++.++.+ ..+++.++...+.++.++. +.+++++++++..++.....+.... +.....+..+..
T Consensus 204 ~~~A~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i 279 (451)
T PF00083_consen 204 DEEAEKVLRKLRGKE---IEDEEIEEIKAEKKESQES-KASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSI 279 (451)
T ss_pred ccccccccccccccc---ccccccccccccccccccc-ceeeeecccccccccccccccccccccccccccccccccccc
Confidence 999998888854421 1111111111111111111 1456677776543333333332222 223344455666
Q ss_pred cccCCchHH-HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH--H-hccch----hHHHHHHHHHHH
Q 040646 335 LGSLSFNLY-LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV--V-MGKIW----TSVEIGLELVAF 406 (509)
Q Consensus 335 ~~~~g~~~~-~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~--~-~~~~~----~~~~~~~~~~~~ 406 (509)
.+..+.+.. ....+.++..+++.+++.++.||+|||++++.+..+++++.+.+. . ...+. ....+....+..
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~ 359 (451)
T PF00083_consen 280 FENAGISNSFLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFF 359 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecc
Confidence 666666655 444555677788888889999999999999988888777776664 1 11111 111222222222
Q ss_pred HHHH-HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHH-HhhccCC
Q 040646 407 FSAC-TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLF-VIGLPET 482 (509)
Q Consensus 407 ~~~~-~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 482 (509)
.... +..+..+.+..|.+|++.|+++.++....+.+++++.|.+..... .+....+.++++++++..++ .+++|||
T Consensus 360 ~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET 439 (451)
T PF00083_consen 360 AFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET 439 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence 2222 334567789999999999999999999999999998887765322 22244556666555555544 4788999
Q ss_pred CCCCCcccHH
Q 040646 483 RDTQLSDTMD 492 (509)
Q Consensus 483 ~~~~~~~~~~ 492 (509)
|+++++|.++
T Consensus 440 ~g~~l~ei~~ 449 (451)
T PF00083_consen 440 KGKTLEEIQE 449 (451)
T ss_pred CCCCHHHHHh
Confidence 9999887654
No 26
>TIGR00895 2A0115 benzoate transport.
Probab=100.00 E-value=1.3e-31 Score=263.15 Aligned_cols=379 Identities=22% Similarity=0.278 Sum_probs=267.3
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646 30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 109 (509)
.++++++.+..+.+..+..+.+.....+. .|.+.+++|. +..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~---~~~~~ 54 (398)
T TIGR00895 11 LSRYQWRAIILSFLIMLMDGYDLAAMGFA---------------------------------APAISAEWGL---DPVQL 54 (398)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHhh---------------------------------HHHHhhccCC---CHHHH
Confidence 45677777777777888888877666664 7899999999 44579
Q ss_pred chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL 189 (509)
Q Consensus 110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 189 (509)
+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++..++++++.+++.|++.|++.+...+...+++.|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 133 (398)
T TIGR00895 55 GFLFSAGLIGMAFGALFFGPLADR-IGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEY 133 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH
Q 040646 190 VGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK 268 (509)
Q Consensus 190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 268 (509)
+|+++|++++++...+..+|..+++.+ +.+.+..+||+.|++.++..++..++...++||+|++...+ +.++..+..+
T Consensus 134 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 212 (398)
T TIGR00895 134 APKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVN 212 (398)
T ss_pred cCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHH
Confidence 999999999999999999999999998 57778889999999987666665666677889988765444 3333333333
Q ss_pred HHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHH---HHHHHHHHHhHhhhccccccccCCchHHHH
Q 040646 269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS---AIMVTGFGIGMVYYGMPLGLGSLSFNLYLS 345 (509)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 345 (509)
+....... +.+.+. . +++.+++......+.+++++..+.... ...+............|++.++.+.+....
T Consensus 213 ~~~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 287 (398)
T TIGR00895 213 AIAPQMQA-EAQSAL---P-EQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLSLA 287 (398)
T ss_pred HHHHhccc-cccccc---c-ccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 33221111 110000 0 000011111112233333332222111 111222222333334466666667665443
Q ss_pred ---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 346 ---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 346 ---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.....++.+++.++.+++.||++||+...... +..+...++..... +........++.+++.+...+...++..|
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 365 (398)
T TIGR00895 288 ATGGALFNFGGVIGSIIFGWLADRLGPRVTALLLL-LGAVFAVLVGSTLF-SPTLLLLLGAIAGFFVNGGQSGLYALMAL 365 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHH-HHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455778899999999999999995444333 33333333332112 22333333445556666677888899999
Q ss_pred ccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.+|++.|+++.|+.+....+|..++|.+.+.
T Consensus 366 ~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~ 396 (398)
T TIGR00895 366 FYPTAIRATGVGWAIGIGRLGAIIGPILAGY 396 (398)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 9999999999999999999999999998873
No 27
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=100.00 E-value=4.7e-32 Score=266.89 Aligned_cols=372 Identities=16% Similarity=0.215 Sum_probs=256.7
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646 30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 109 (509)
++++||+.+..+.++++.++++....... .|.+++++|+ +..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~l~~~~~~---s~~~~ 49 (405)
T TIGR00891 6 LTRAQWNAFSAAWLGWLLDAFDFFLVALV---------------------------------LAEVAGEFGL---TTVDA 49 (405)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCC---ChhhH
Confidence 56789999999999999999999888885 8999999999 44589
Q ss_pred chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL 189 (509)
Q Consensus 110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 189 (509)
+++.+.+.++..+++++.|.++|| +|||+++.++.++.++++++++++++++.+++.|++.|++.+...+...+++.|+
T Consensus 50 g~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~ 128 (405)
T TIGR00891 50 ASLISAALISRWFGALMFGLWGDR-YGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIES 128 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc--chHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHH
Q 040646 190 VGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS--WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSI 266 (509)
Q Consensus 190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~--wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~ 266 (509)
+|+++|+++.++.+.+..+|..+++.++ .+....+ ||+.|++.+++.++. +.....+||++++...+++.++..+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (405)
T TIGR00891 129 WPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA-LWLRKNIPEAEDWKEKHAGKALVRTM 207 (405)
T ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH-HHHHHhCCCChhHHHHhhhhhhhhhH
Confidence 9999999999999999999999999984 5555444 999998876666553 44556778887543222211111111
Q ss_pred HHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchH--HHHHHHHHHHHHHHHhHhhhcccccc-ccCCchHH
Q 040646 267 IKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW--ALRRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLY 343 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~ 343 (509)
.++..+ +++... ...++.....++..+++. +........+............|.+. ++.|.+..
T Consensus 208 ~~~~~~--~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 274 (405)
T TIGR00891 208 VDILYG--GEHRIA-----------NIVMTLAAAMVQSAGKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPH 274 (405)
T ss_pred HHHHhc--cchhhh-----------hhhhhhhHHhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHH
Confidence 111110 000000 000000001111111111 00011111111111112222233333 44666654
Q ss_pred HH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhc
Q 040646 344 LS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYT 420 (509)
Q Consensus 344 ~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (509)
.. .....++.+++.++.+++.||+|||+.+..+..+..+..+....... ..........+..+......+....+.
T Consensus 275 ~~~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (405)
T TIGR00891 275 TVANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIGA-NVAVLGLGLFFQQMLVQGIWGILPKHL 353 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHccchhhHHHHH
Confidence 43 34455788899999999999999999888776655333332222222 222222221222233334456677888
Q ss_pred ccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 421 LELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 421 ~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.|.+|++.|+++.|+.+....+|..++|.+.+.
T Consensus 354 ~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~ 386 (405)
T TIGR00891 354 GEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL 386 (405)
T ss_pred hhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999884
No 28
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=100.00 E-value=6.3e-32 Score=270.16 Aligned_cols=417 Identities=17% Similarity=0.123 Sum_probs=272.3
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccc
Q 040646 29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108 (509)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (509)
.+++.++++..++++++...+.|+...++....... +.+..+..|.. .+.+..+....|+++ ++.+
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~~~---s~~~ 77 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVN-----KENSTDLACLS------AENELDNIKNPNFKW---SGAL 77 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEccc-----CCCCCCccccc------cccccccccCCCCCC---CHHH
Confidence 356788889999999999999999888886332211 11111111110 011112233447888 5558
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHhhccchhhhhheeee
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS--TNMWIYSVLRFINGFGRATIGTCAIVLS 186 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i 186 (509)
.|++.+.+.+++.+++++.|+++|| +|||+++..+.++++++++++.++ .+++.+++.|+++|++.+...+....++
T Consensus 78 ~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~ 156 (465)
T TIGR00894 78 QGLILSSHFYGQIIIQIPVGYLAGK-YVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKII 156 (465)
T ss_pred hhHHHHHHHHHHHHHHcchHHHHHH-hCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHH
Confidence 9999999999999999999999999 999999999999999999887654 4588999999999999999999999999
Q ss_pred EeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHH
Q 040646 187 TELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAV 264 (509)
Q Consensus 187 ~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~ 264 (509)
.|++|+++|++++++...+..+|.++++++ +.+... .+||+.|++.+++.++..++.+.+.+|+|+... +.+++|.
T Consensus 157 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~- 234 (465)
T TIGR00894 157 VKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHP-CISKFEK- 234 (465)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCC-CCCHHHH-
Confidence 999999999999999999999999999998 566666 499999999999888776666666777774210 1111111
Q ss_pred HHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccc-cCCchHH
Q 040646 265 SIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-SLSFNLY 343 (509)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~ 343 (509)
+ .+....+ ++.++.+.+.+++++++++..+...+..+...........++|.+++ ..|.+..
T Consensus 235 ~---~i~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~ 297 (465)
T TIGR00894 235 K---YINSSLQ--------------GQKGSTRQSLPIKAIPKSLPVWAIWFAIFGHFWLYTILPTYLPTFISWVLRVSGK 297 (465)
T ss_pred H---HHHhhcc--------------cccCCCCCCCCHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChH
Confidence 1 1100000 00000111235788888888766666555555555544445565554 4677654
Q ss_pred HHH---HHHHhhhhhHHHHHHHHhhhcCchhHH--------HHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHH
Q 040646 344 LSV---TFNALSELPASLITFFLIGKLKRKSSL--------LGFTIMSGVCSVLCVVMG-KIWTSVEIGLELVAFFSACT 411 (509)
Q Consensus 344 ~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 411 (509)
... .+..++.+++.+++|+++||+++|+.. ..+..........+.... .......+....+.++..+.
T Consensus 298 ~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 377 (465)
T TIGR00894 298 ENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYLSAAFYLTIIILTLANAVSSG 377 (465)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhh
Confidence 443 334577888999999999997644211 111111111111111111 11222222223333333333
Q ss_pred HhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc----c-chhHHHHHHHHHHHHHHHHhhcc
Q 040646 412 AFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ----N-NFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 412 ~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
..+.......|..|. .+|.+.|+.+..+.+|++++|.+.+.... + ....+.+.++..+++.++.....
T Consensus 378 ~~~~~~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~~ 450 (465)
T TIGR00894 378 PLAGVLINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIFG 450 (465)
T ss_pred hhhhhhhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 334444556677765 79999999999999999999999984221 1 33455666666666655544443
No 29
>TIGR00893 2A0114 d-galactonate transporter.
Probab=100.00 E-value=5.2e-32 Score=265.77 Aligned_cols=365 Identities=16% Similarity=0.160 Sum_probs=254.3
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
.|.+++++|+ +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus 17 ~~~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (399)
T TIGR00893 17 APMLQEDLGL---SAAQYGYVFSAFSWGYVVGQFPGGWLLDR-FGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLL 92 (399)
T ss_pred HHHHHHhhCC---ChhhHHHHHHHHHHHHHHHHHhHHHHHHh-cCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 7889999999 45589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+....++.|++|+++|++++++.+....+|.++++.+ +.+....+||+.|++.+++.++..+...+..||+
T Consensus 93 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 93 GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDP 172 (399)
T ss_pred HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCC
Confidence 999999999999999999999999999999999999999999998 5677888999999999888887666666677776
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
|+.. +...++.++... + ....+ .+.++++++...+.++.+++|.++......+............
T Consensus 173 ~~~~--~~~~~~~~~~~~------~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (399)
T TIGR00893 173 PQKA--KWLTEEEKYIVV------G--GLLAE-----QQGKGPSTPKKYQIKELLKDRRVWGLALGQFLVNIGLGFFLTW 237 (399)
T ss_pred CCcc--ccCCHHHHhhcc------h--hhccc-----cccccccCCCccchHHHhcCHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5311 000111100000 0 00000 0011111222345677888887666555555555555544444
Q ss_pred cccccc-cCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhH--HHHHHH--HHHH-HHHHHHHhc-cchhHHHHH
Q 040646 331 MPLGLG-SLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSS--LLGFTI--MSGV-CSVLCVVMG-KIWTSVEIG 400 (509)
Q Consensus 331 ~~~~~~-~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~--~~~~~~--~~~~-~~~~~~~~~-~~~~~~~~~ 400 (509)
.|.+++ ..+.+.... .....++.+++.++.+++.||++||+. ...... ...+ ..+...... .+.......
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (399)
T TIGR00893 238 FPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPYAALA 317 (399)
T ss_pred HHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 555543 456654433 344457788899999999999999862 111111 1111 111111111 112222222
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc--c-chhHHHHHHHHHHHHHHHH
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ--N-NFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~ 476 (509)
...+..+..+ ..+....+..|.+|++.|+++.|+.+....+|..++|.+.+.... + ....+.+.+++.+++.+..
T Consensus 318 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 395 (399)
T TIGR00893 318 LVALGFFGLG-AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY 395 (399)
T ss_pred HHHHHHhchh-hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence 2233333333 567888999999999999999999999999999999999884322 2 3445555555555554443
No 30
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=100.00 E-value=1.8e-31 Score=260.33 Aligned_cols=347 Identities=12% Similarity=0.061 Sum_probs=240.7
Q ss_pred CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
.+|.+++|+|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+..+++++.+++++++|++.+++.|++
T Consensus 31 ~lp~i~~~~~~---s~~~~g~~~s~~~~~~~l~~~~~g~l~dr-~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l 106 (393)
T PRK09705 31 LLPQLRQASGM---SFSVAALLTALPVVTMGGLALAGSWLHQH-VSERRSVAISLLLIAVGALMRELYPQSALLLSSALL 106 (393)
T ss_pred hHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHhhhhHHHHHH-hCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHH
Confidence 38999999999 55589999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHHHHHHhheee-
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTILYCILVRFLV- 247 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~- 247 (509)
+|++.+...+....++.|++| ++|+++++++..+..+|..+++.+ +.+.++. +||+.+.+.++..++.. ..++..
T Consensus 107 ~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~-~~~~~~~ 184 (393)
T PRK09705 107 GGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVAL-FAWWWQS 184 (393)
T ss_pred HHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHh
Confidence 999999999999999999997 889999999999999999998888 4555554 89998877666554432 222211
Q ss_pred cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646 248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV 327 (509)
Q Consensus 248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (509)
++.|+ .+ ++ + +. +.++.++++..+.......+........
T Consensus 185 ~~~~~-------~~------------~~---------------~--~~----~~~~~l~~~~~~~l~~~~~~~~~~~~~~ 224 (393)
T PRK09705 185 AREVA-------SS------------HK---------------T--TT----TPVRVVFTPRAWTLGVYFGLINGGYASL 224 (393)
T ss_pred cCCCc-------cc------------cC---------------C--Cc----CCcccccCHhHHHHHHHHHHHHHHHHHH
Confidence 11110 00 00 0 00 0112334444333333333333333333
Q ss_pred hhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
....|.++++.|.+.... ..+.+++.+++.++.+++.||++||+....+..+..++..++...+..... . . ..+
T Consensus 225 ~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~-~-~~l 301 (393)
T PRK09705 225 IAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPV-L-W-AMV 301 (393)
T ss_pred HHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHH-H-H-HHH
Confidence 344455556677765443 445568889999999999999999998888877766665554433332211 1 1 223
Q ss_pred HHHHHHHHhHHHHhhccccc-chhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHH-Hhhc
Q 040646 405 AFFSACTAFSLLLIYTLELF-PTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGLF-VIGL 479 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~ 479 (509)
.+++.+..++.......+.. |++.+++..|+.+....++..++|.+.+... .++...+.+.+++.++..+. ..+.
T Consensus 302 ~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (393)
T PRK09705 302 CGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFA 381 (393)
T ss_pred HHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhc
Confidence 33444445555555555666 4678999999999999999999999888322 22344455555544444444 3455
Q ss_pred cCCCCCC
Q 040646 480 PETRDTQ 486 (509)
Q Consensus 480 ~~~~~~~ 486 (509)
||++.+.
T Consensus 382 ~~~~~~~ 388 (393)
T PRK09705 382 PARFPQL 388 (393)
T ss_pred cccccch
Confidence 6665544
No 31
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=100.00 E-value=1.7e-31 Score=267.99 Aligned_cols=377 Identities=12% Similarity=0.011 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchhH
Q 040646 34 QLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPA 113 (509)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 113 (509)
+|..+..++++.+....|..+.+.. +|++.+|+|.+ ..+.+|+.
T Consensus 4 ~~~~~~~~~~~~~~~~ld~tiv~~a---------------------------------~p~i~~~l~~s---~~~~~~~~ 47 (495)
T PRK14995 4 QWLTLVIIVLVYIPVAIDATVLHVA---------------------------------APTLSMTLGAS---GNELLWII 47 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCC---HhHHHHHH
Confidence 4667888999999999999888885 89999999994 44799999
Q ss_pred HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec-cC
Q 040646 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV-GK 192 (509)
Q Consensus 114 s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~ 192 (509)
+.|.+++.++++++|+++|| +|||+++..+.++++++++++++++|++.++++|+++|++.+...+.....+.+.+ |+
T Consensus 48 ~~~~l~~~~~~~~~G~l~D~-~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~ 126 (495)
T PRK14995 48 DIYSLVMAGMVLPMGALGDR-IGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEE 126 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999 99999999999999999999999999999999999999999998888888777765 67
Q ss_pred cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH---
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK--- 268 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~--- 268 (509)
++|+++++++.....+|..++|.+ +.+.++.+||+.|++...++++..++..+++||+|+. .+++.+.......
T Consensus 127 ~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~ 204 (495)
T PRK14995 127 KQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVA 204 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHH
Confidence 999999999999999999999999 5777888999999998877777666666778876531 0111111110000
Q ss_pred ---HHHhhcCCccccccccCcc---------------cccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 269 ---SISTSENQRSLIMDFNNVS---------------FEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 269 ---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
......+... ....... ...+.+.+++.. -.++++++.+.......+..........+.
T Consensus 205 ~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~-~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (495)
T PRK14995 205 ILLLVYSAKTALK--GFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMI-DMRLFTHRIILSGVVMAMTAMITLVGFELL 281 (495)
T ss_pred HHHHHHHHHhccc--cCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-CHHHhCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 0000000 000111111111 145777877655555554444444444445
Q ss_pred ccccccc-CCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHHHH
Q 040646 331 MPLGLGS-LSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK-IWTSVEIGLELVA 405 (509)
Q Consensus 331 ~~~~~~~-~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 405 (509)
.|.+++. .|.++...+. ...++..++.++.|++.||+|+|+.+..+.++.+++.+.+..... ...+......++.
T Consensus 282 ~~~~lq~v~g~s~~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 361 (495)
T PRK14995 282 MAQELQFVHGLSPLEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALL 361 (495)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 5655544 5777655543 344777888999999999999999888887777776655544322 2223333344555
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
+++.+...+.......+..|+++++.+.++.++...+|+.+++.+.+
T Consensus 362 G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g 408 (495)
T PRK14995 362 GFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFG 408 (495)
T ss_pred HHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666677778888999999999999999999999998888877
No 32
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=100.00 E-value=2.8e-31 Score=264.69 Aligned_cols=383 Identities=15% Similarity=0.070 Sum_probs=245.8
Q ss_pred CCChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccc
Q 040646 29 DFSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLI 108 (509)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 108 (509)
.+.+.+++.+....+..+....+.+..... .|.+.+|+|+ +..+
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~l~~~~gl---s~~~ 72 (476)
T PLN00028 29 SFARPHMRAFHLSWISFFTCFVSTFAAAPL---------------------------------LPIIRDNLNL---TKSD 72 (476)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHcCC---CHHH
Confidence 344556666666666666666655444432 7899999999 4457
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
.+++.+.+.+++.+++++.|+++|| +|||+++..+.++++++.++++++++++.+++.|++.|++.+... ....++.|
T Consensus 73 ~g~~~~~~~~~~~~~~~~~G~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~ 150 (476)
T PLN00028 73 IGNAGIASVSGSIFSRLAMGPVCDL-YGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMST 150 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHH
Confidence 8999999999999999999999999 999999999999999999999999999999999999999987643 45567899
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHHH----H-Hhc-----CCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcC
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIA----Y-INR-----GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG 258 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~----~-~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~ 258 (509)
++|+++|++++++......+|..+++.+. . +.. ..|||+.|++.+++.++..++.+++.++.|+ +
T Consensus 151 ~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~ 225 (476)
T PLN00028 151 MFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----G 225 (476)
T ss_pred hcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----C
Confidence 99999999999998876666666654442 1 111 2589999999999888766555444444442 1
Q ss_pred CHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-cc
Q 040646 259 RKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GS 337 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 337 (509)
+.++. .+ +. +.++.+....+++.++++..+...+..+.............|.++ +.
T Consensus 226 ~~~~~-------~~-~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~ 282 (476)
T PLN00028 226 NYREL-------KK-SG---------------TMPKDSFSKVLRYGVTNYRTWILALTYGYSFGVELTMDNIIAEYFYDR 282 (476)
T ss_pred chhhH-------Hh-cC---------------ccccccHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 10000 00 00 000001112355666776654433332222222222222334443 44
Q ss_pred CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchh-------HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 338 LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKS-------SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 338 ~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
.|.+..... .+..++.+++.+++|+++||++||+ .......+.++..+++.. ...........++..+
T Consensus 283 ~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--~~~~~~~~~~~~l~~~ 360 (476)
T PLN00028 283 FGLSLETAGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR--ANSLGAAIVVMILFSI 360 (476)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHH
Confidence 577655443 4455788899999999999998652 222222222222222222 2222222222233333
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc-ccchhHHHHHHHHHHHHHHHHhhcc
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR-QNNFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
+.....+..+.+..+..| ++++++.|+.+..+.+|++++|.+.+... .++...+.+.+++.++++++.++.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~ 433 (476)
T PLN00028 361 FVQAACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH 433 (476)
T ss_pred HHHHhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence 333444556666777655 68999999999988999999998876332 2345567777777777766655543
No 33
>PRK15075 citrate-proton symporter; Provisional
Probab=100.00 E-value=1.6e-30 Score=257.31 Aligned_cols=345 Identities=17% Similarity=0.163 Sum_probs=225.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc-hhH
Q 040646 35 LVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG-LPA 113 (509)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~ 113 (509)
++....+.++.+++++|....++. .|.+.+|++.+.. +.+ +..
T Consensus 14 ~~~~~~~~~~~~~~~~d~~~~~~~---------------------------------~~~i~~~~~~~~~---~~~~~~~ 57 (434)
T PRK15075 14 ARAILRVTSGNFLEMFDFFLFGFY---------------------------------ATAIAKTFFPAGN---EFASLML 57 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCCCC---chHHHHH
Confidence 345677888999999999999986 8999999998543 333 333
Q ss_pred HHH-----HHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhccchhhh
Q 040646 114 SSF-----FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGRATIGT 180 (509)
Q Consensus 114 s~~-----~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~ 180 (509)
+.. .++..+++++.|+++|| +|||+.++.+.+++++++++++++++++ .++++|+++|++.+...+
T Consensus 58 ~~~~~~~~~l~~~ig~~~~G~l~Dr-~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~ 136 (434)
T PRK15075 58 TFAVFGAGFLMRPLGAIVLGAYIDR-VGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELG 136 (434)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhhh-hchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHH
Confidence 322 23335788999999999 9999999999999999999999999987 468999999999999999
Q ss_pred hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHH---------hcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI---------NRGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~---------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
....++.|++|+++|++++++...+..+|..+++.++.. .++.|||++|++..+...+ ........||++
T Consensus 137 ~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~-~~~~~~~~~e~~ 215 (434)
T PRK15075 137 GVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPF-IFLIRRSLEETE 215 (434)
T ss_pred HHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHH-HHHHHHhcCCCH
Confidence 889999999999999999999998888888877777432 2468999999875544322 222222334432
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHH-HHHHHHHHhHhhhc
Q 040646 252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSA-IMVTGFGIGMVYYG 330 (509)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~ 330 (509)
++...+ .+ .+....+++..+++..+..... .+..........+.
T Consensus 216 ~~~~~~----------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (434)
T PRK15075 216 EFLARK----------------HR-------------------PSMREIFRSLAANWRIVLAGMLMVAMTTVSFYLITVY 260 (434)
T ss_pred HHHHhh----------------hc-------------------cccccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 210000 00 0000112233333322211111 11122223333444
Q ss_pred ccccccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHH-HHHH-hccchhHHHHHHHHH
Q 040646 331 MPLGLGS-LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSV-LCVV-MGKIWTSVEIGLELV 404 (509)
Q Consensus 331 ~~~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~ 404 (509)
.|.++++ .|.+.... .....++.+++.++.|+++||+|||+.+..+..+..+... .+.. ..............+
T Consensus 261 ~p~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (434)
T PRK15075 261 TPTFGKTVLHLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAVELW 340 (434)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 5665554 57765443 3344577788999999999999999987766544433221 1111 122222222222222
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHh-HhhHHHHHHHH
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALV-FGGVFSPVLVA 452 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~-~g~~i~p~~~~ 452 (509)
..++.+...+..+.+..|.+|++.|+++.++.+.... +++.++|.+.+
T Consensus 341 ~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g 389 (434)
T PRK15075 341 LSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAIST 389 (434)
T ss_pred HHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHH
Confidence 2334444445566788999999999999998765554 45777888887
No 34
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=100.00 E-value=3.6e-30 Score=250.91 Aligned_cols=316 Identities=12% Similarity=0.160 Sum_probs=227.6
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+|+|++ ..+.|+..+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|+++
T Consensus 43 l~~~~~~~g~s---~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~ 118 (394)
T PRK10213 43 LTPMAQDLGIS---EGVAGQSVTVTAFVAMFASLFITQTIQA-TDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACL 118 (394)
T ss_pred HHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHH
Confidence 68899999994 4589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|+++.++...+.++|.+++|++ +.+.+..+||+.|++.++++++..+.....+||+
T Consensus 119 G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 119 GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 999999999999999999999999999999999999999999999 4677778999999998877766444444445664
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH-hhh
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM-VYY 329 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (509)
|+. + + +.....++.+++|.++......+........ ..+
T Consensus 199 ~~~-----~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (394)
T PRK10213 199 PGE-----P-S----------------------------------HQKQNTFRLLQRPGVMAGMIAIFMSFAGQFAFFTY 238 (394)
T ss_pred Ccc-----c-c----------------------------------cchhHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 310 0 0 0001234567777765544443333333222 233
Q ss_pred ccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
..|.+.++.|.+.... ....+++.+++.++.+++.||.++ +.+.....+..+....+..... ..+......++.+
T Consensus 239 ~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r~~~-~~l~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~l~G 316 (394)
T PRK10213 239 IRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKRSVK-LALAGAPLVLAVSALVLTLWGS-DKIVATGVAIIWG 316 (394)
T ss_pred HHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 3466777777776443 334457788899999999999544 4433333333333222222222 2333333344444
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG 454 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~ 454 (509)
++.+...+...+++.+..|+ .++...+.......+|..++|.+.+..
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l 363 (394)
T PRK10213 317 LTFALVPVGWSTWITRSLAD-QAEKAGSIQVAVIQLANTCGAAIGGYA 363 (394)
T ss_pred HHHHhhhHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555556666677777774 456667777777788888999888843
No 35
>PRK03893 putative sialic acid transporter; Provisional
Probab=100.00 E-value=9.2e-31 Score=264.45 Aligned_cols=376 Identities=17% Similarity=0.201 Sum_probs=251.0
Q ss_pred CChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeecccccccccc
Q 040646 30 FSSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIK 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 109 (509)
..+.+++.+..++++++.++++....... .|.+.+++|++ ..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~i~~~~~~s---~~~~ 57 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLV---------------------------------LTEVQGEFGLT---TVQA 57 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCCC---HHHH
Confidence 34678888889999999999998777765 78999999994 4478
Q ss_pred chhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646 110 GLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL 189 (509)
Q Consensus 110 ~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 189 (509)
+++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.|+
T Consensus 58 ~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 136 (496)
T PRK03893 58 ASLISAAFISRWFGGLLLGAMGDR-YGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIES 136 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred ccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH
Q 040646 190 VGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK 268 (509)
Q Consensus 190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 268 (509)
+|+++|++++++...+..+|..+++.+ +.+.+..+||+.|++..++.++ .+.....+||++++...+++.++..+..+
T Consensus 137 ~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 215 (496)
T PRK03893 137 WPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIF-ALWLRKNLPEAEDWKEKHAGKAPVRTMVD 215 (496)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhCCCchhhhhhccccccchhHHH
Confidence 999999999999999999999999998 5777888999999875554443 33444566776654221111110000000
Q ss_pred HHHhhcCCccccccccCcccccccccccchhHHHHHHh---------------------------chHHHHHHHHHHHHH
Q 040646 269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE---------------------------KKWALRRLSAIMVTG 321 (509)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------~~~~~~~~~~~~~~~ 321 (509)
.... .+.+.. . ..............+. ++..+..........
T Consensus 216 ~~~~-~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (496)
T PRK03893 216 ILYR-GEHRII-------N---ILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVV 284 (496)
T ss_pred HHhc-chhHHH-------H---HHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHH
Confidence 0000 000000 0 0000000000000000 000000000000000
Q ss_pred HHHh----Hhhhcccccc-ccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc
Q 040646 322 FGIG----MVYYGMPLGL-GSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI 393 (509)
Q Consensus 322 ~~~~----~~~~~~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
+... .....+|.++ ++.|.+.... .....++.+++.++.|++.||+|||+.+..+..+..+..+.+......
T Consensus 285 ~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (496)
T PRK03893 285 LFAFLYSWPIQALLPTYLKTDLGYDPHTVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAIGGA 364 (496)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccc
Confidence 1000 0112345555 4677765444 344457788899999999999999998887766555554433332222
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646 394 WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG 454 (509)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~ 454 (509)
..+......++..+......+....+..|.+|++.|++++|+.+....+|+.++|.+.+..
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l 425 (496)
T PRK03893 365 NVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALI 425 (496)
T ss_pred HHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHH
Confidence 2222222212211222223345667888999999999999999999999999999998843
No 36
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=100.00 E-value=1.9e-31 Score=264.61 Aligned_cols=362 Identities=15% Similarity=0.124 Sum_probs=237.3
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSV-LRFI 170 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~-~r~l 170 (509)
+|++.+++|++ ..+.+++.+.+.++..++.++.|+++|| +|||++++.+.++.++++++++++++++.+++ .|++
T Consensus 42 ~~~i~~~~g~s---~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 117 (455)
T TIGR00892 42 FKELQQIFQAT---YSETAWISSIMLAVLYAGGPISSILVNR-FGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFI 117 (455)
T ss_pred HHHHHHHhCcc---hhHHHHHHHHHHHHHHHhhHHHHHHHHH-cCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 78999999994 4479999999999999999999999999 99999999999999999999999999998865 5799
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.|++.+...+...+++.++++ ++|+++.++.+.+..+|..++|.+ +.+.+..|||+.|++.+++.++..+..++..++
T Consensus 118 ~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~ 196 (455)
T TIGR00892 118 TGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPV 196 (455)
T ss_pred HHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999877777788889996 789999999999999999999888 577777899999999998877654444333333
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY 329 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (509)
.+.. +...++.. . ..+++... ++.+.....++..+..+ .+++++|.++......++..++......
T Consensus 197 ~~~~---~~~~~~~~-------~-~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 262 (455)
T TIGR00892 197 GPSQ---RVSKSKSK-------E-GLPPDGST--KKLSKKSTAEKINRFLD-FSLFTHRGFLVYLSGNVIMFLGFFAPII 262 (455)
T ss_pred Cccc---cccccccc-------c-cCCCCCcc--ccccccchhhhhhhhcc-hHHhcCchHHHHHHHHHHHHHHccchHH
Confidence 2210 00000000 0 00000000 00000000000000001 2467777766555544444444433344
Q ss_pred ccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhc--CchhHHHHH--HHHHHHHHHHHHHhccchhHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKL--KRKSSLLGF--TIMSGVCSVLCVVMGKIWTSVEIGLE 402 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~--gr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
.++.+.++.+.+..... .+.+++.+++.++.+++.||. ++|+..... .++.+++.++... .++.+......
T Consensus 263 ~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~~~~~~i~~ 340 (455)
T TIGR00892 263 FLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL--AGDYTGLVIYC 340 (455)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--hchHHHHHHHH
Confidence 44555566677655543 334566777888899999973 333333322 2222232223222 22233333334
Q ss_pred HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--c-cchhHHHHHHHHHHHHHH
Q 040646 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--Q-NNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~-~~~~~~~~~~~~~~~~~~ 474 (509)
++.+++.+...+...++..|.+|++++++++|+.+....+|.+++|.+.+... . ++...+.+.+++.+++.+
T Consensus 341 ~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 341 IFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 44445555666777888899999999999999999999999999999998322 1 234455555555444443
No 37
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.98 E-value=5.2e-30 Score=251.50 Aligned_cols=347 Identities=15% Similarity=0.089 Sum_probs=237.1
Q ss_pred Ccc-eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH--------hHHH
Q 040646 92 HTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS--------TNMW 162 (509)
Q Consensus 92 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~--------~~~~ 162 (509)
+|. +++++|+ +..+.|++.+++.+++.+++++.|+++|| +|||+++..+.++.+++++++.++ .+++
T Consensus 38 l~~~i~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (399)
T PRK05122 38 LPGYVHDQLGF---SAFLAGLVISLQYLATLLSRPHAGRYADT-LGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLL 113 (399)
T ss_pred HHHHHHHhcCc---cHHHHHHHHHHHHHHHHHhchhhHhHHhc-cCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHH
Confidence 454 6789999 55589999999999999999999999999 999999999999988887766553 2577
Q ss_pred HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHH
Q 040646 163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCI 241 (509)
Q Consensus 163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~ 241 (509)
.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|.++++.+ +.+....|||..+++.++..++..
T Consensus 114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~- 192 (399)
T PRK05122 114 LLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGL- 192 (399)
T ss_pred HHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH-
Confidence 899999999999999999999999999999999999999999999999999998 467788899999887666655432
Q ss_pred HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646 242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG 321 (509)
Q Consensus 242 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (509)
......|++++ .+ ++ +.++++.+++. +.......+..
T Consensus 193 ~~~~~~~~~~~-----~~-~~-----------------------------------~~~~~~~~~~~--~~~~~~~~~~~ 229 (399)
T PRK05122 193 LLARPRPAVPP-----VK-GE-----------------------------------RLPFRRVLGRV--WPYGMGLALAS 229 (399)
T ss_pred HHHhcCCCCCC-----CC-cc-----------------------------------chhHHHHHHHH--HHHHHHHHHHH
Confidence 22222232210 00 00 00122222211 11111111111
Q ss_pred HHHhHhhhccccccccCCch-HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646 322 FGIGMVYYGMPLGLGSLSFN-LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
++........+.+..+.+.+ .........++.+++.++.+++.||+++|+.+..+..+.+++.+.+.... +.+....
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 307 (399)
T PRK05122 230 IGFGTIATFITLYYAARGWDGAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP--SPWMALI 307 (399)
T ss_pred HHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHH
Confidence 22222222223333333432 22333455677788899999999999999988887777777666555532 2333333
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhh
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIG 478 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 478 (509)
..++.+++.+..++.......|..|++.|+++.|+.+....+|..++|.+.+.. ..++...+.+.+++.+++.+..+.
T Consensus 308 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (399)
T PRK05122 308 GAALTGFGFSLVFPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL 387 (399)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666777889999999999999999999988888887732 234455566666666666655555
Q ss_pred ccCCCCCCCc
Q 040646 479 LPETRDTQLS 488 (509)
Q Consensus 479 ~~~~~~~~~~ 488 (509)
++++++|+.+
T Consensus 388 ~~~~~~~~~~ 397 (399)
T PRK05122 388 LYRRAPRAVP 397 (399)
T ss_pred hcccccccCC
Confidence 6655554443
No 38
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.97 E-value=1.3e-30 Score=262.76 Aligned_cols=378 Identities=14% Similarity=0.117 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchhHHH
Q 040646 36 VQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLPASS 115 (509)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~s~ 115 (509)
+++..++++.+...+|....... .|.+.+++|.+ ..+.+++.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~~~~~~g~s---~~~~~~~~~~ 45 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVA---------------------------------IPTIAGDLGSS---LSQVQWVITS 45 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHhcCCC---hhhhhHHHHH
Confidence 34566777888888887666664 89999999994 4479999999
Q ss_pred HHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCccc
Q 040646 116 FFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRR 195 (509)
Q Consensus 116 ~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r 195 (509)
+.++..++.++.|+++|| +|||++++.+.++.+++++++++++|++.+++.|+++|++.+...+...+++.|++|+++|
T Consensus 46 ~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r 124 (485)
T TIGR00711 46 YMLANAISIPLTGWLAKR-FGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKR 124 (485)
T ss_pred HHHHHHHHHHhHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHH-------
Q 040646 196 GQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSII------- 267 (509)
Q Consensus 196 ~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~------- 267 (509)
+++.+++..+..+|..++|.+ +++.++.+||+.|++.+.+.++..+...+.+||+++. .+++.+.....+
T Consensus 125 ~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~ 202 (485)
T TIGR00711 125 GRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGS 202 (485)
T ss_pred HHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHH
Confidence 999999999999999999998 5777889999999998888777665666667765431 111111111000
Q ss_pred -HHHHhhcCCccccccccCcc------------cccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccc
Q 040646 268 -KSISTSENQRSLIMDFNNVS------------FEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLG 334 (509)
Q Consensus 268 -~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (509)
.......++.+...+..... ...+.+++++. .-.++++++.++...+..++..+......+..|.+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 281 (485)
T TIGR00711 203 LLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPL-VDLRLFKYRNFTIGCVYMSLLGLGLYGSFYLLPLY 281 (485)
T ss_pred HHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCc-cCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000000000 00000111111 12356777776666555555555555455556666
Q ss_pred ccc-CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH-h-ccchhHHHHHHHHHHHHH
Q 040646 335 LGS-LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV-M-GKIWTSVEIGLELVAFFS 408 (509)
Q Consensus 335 ~~~-~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 408 (509)
+++ .|.++.... ....++.+++.++.+++.||+|||+.+..+..+.+++..++.+ . +...........++.+++
T Consensus 282 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g 361 (485)
T TIGR00711 282 LQQVLGYTALQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGFG 361 (485)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHH
Confidence 654 576655443 3345778889999999999999999988888777777666652 2 222222333334444555
Q ss_pred HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.+..++.......+..|+++++++.|+.+....+|+.+++.+.+.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ 406 (485)
T TIGR00711 362 MGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITT 406 (485)
T ss_pred HHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555566667788899999999999999999999999988873
No 39
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.97 E-value=9.8e-30 Score=247.52 Aligned_cols=336 Identities=12% Similarity=0.087 Sum_probs=230.9
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+++|+|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|++.
T Consensus 26 l~~~~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~ 101 (382)
T PRK10091 26 LTELAHDVGI---SIPAAGHMISYYALGVVVGAPIIALFSSR-YSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVS 101 (382)
T ss_pred hHHHHHHcCC---CHHHHhHHHHHHHHHHHHHHHHHHHHHcc-CccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 7899999999 44579999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+....++.|++++++|++++++...+..+|..+++.+ +.+.+..+||+.|++.++..++..+..++.+||.
T Consensus 102 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~ 181 (382)
T PRK10091 102 GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDI 181 (382)
T ss_pred HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999888888899999999999999999999999999999988 4666778999999999888777655555667775
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh-Hhhh
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG-MVYY 329 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 329 (509)
++ +.+.+ . + ...+.++++..+.......+...+.. ...+
T Consensus 182 ~~----~~~~~-~----------------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (382)
T PRK10091 182 RD----EAKGG-L----------------------------------R-EQFHFLRSPAPWLIFAATMFGNAGVFAWFSY 221 (382)
T ss_pred Cc----ccccC-H----------------------------------H-HHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 00000 0 0 01123445443333222222222221 1223
Q ss_pred ccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
..+++.+..|.+..... ...+++.+++.++.+++.||+++|+.+..+..+.+++.+++....... +......++..
T Consensus 222 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~ 300 (382)
T PRK10091 222 IKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMK-TASLIFAFICC 300 (382)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHH
Confidence 33444445676655443 445577889999999999999999998887777666665544322222 22222222222
Q ss_pred HHHHHHhH-HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHH
Q 040646 407 FSACTAFS-LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 407 ~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~ 474 (509)
.+.....+ .......+..|++.++.+ ..+....+|..++|.+.+... .++...+.+.+++..+...
T Consensus 301 ~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~ 370 (382)
T PRK10091 301 AGLFALSAPLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMS 370 (382)
T ss_pred HHHHhhhHHHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHH
Confidence 22222222 222344455555555544 345667899999999888322 2344455555444444333
No 40
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.97 E-value=2.1e-29 Score=247.63 Aligned_cols=324 Identities=13% Similarity=0.083 Sum_probs=233.4
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+|+|+ +..+.++..+.+.+++.+++++.|+++|| +|||+++..+..+.+++.+++.++++++.+++.|++.
T Consensus 36 ~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 111 (406)
T PRK15402 36 MLAVVEDFNA---GAEWVPTSMTAYLAGGMFLQWLLGPLSDR-IGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQ 111 (406)
T ss_pred hHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 6889999999 44589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|++..++......+|..++|.+ +.+.+..+||+.|++.++..++..+..+...||+
T Consensus 112 G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (406)
T PRK15402 112 GIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPET 191 (406)
T ss_pred HhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999998888889999999999999999999988888899999998 5666778999999998888777655555566775
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
++.. ++ +. +.++...++++++++|.++.......+...........
T Consensus 192 ~~~~---~~-~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (406)
T PRK15402 192 AGRV---GE-KL------------------------------SLKELGRDYKLVLKNRRFVAGALALGLVSLPLLAWIAL 237 (406)
T ss_pred Cccc---cc-cc------------------------------cHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4210 00 00 00011124567788887655444433333322222222
Q ss_pred ccccc-ccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHH
Q 040646 331 MPLGL-GSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---KIWTSVEIGLEL 403 (509)
Q Consensus 331 ~~~~~-~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 403 (509)
.|.++ +..+.+..... ....++.+++.++.+++.||+++|+.+..+.++..++..++.... ...........+
T Consensus 238 ~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 317 (406)
T PRK15402 238 SPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISSHAYLWLTAGLS 317 (406)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence 34433 44566654433 223356778899999999999999998888776666665554422 122222222233
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG 454 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~ 454 (509)
+.+++.+...+......... +++++++..+..+....+|..+++.+.+..
T Consensus 318 ~~g~g~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l 367 (406)
T PRK15402 318 LYAFGIGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHA 367 (406)
T ss_pred HHHHHHHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444443333 347899999999999999999999998843
No 41
>PRK10504 putative transporter; Provisional
Probab=99.97 E-value=5.1e-30 Score=257.06 Aligned_cols=353 Identities=15% Similarity=0.150 Sum_probs=248.4
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
.|.+.+|+|.+ ..+.+++.+.+.++..++.+++|+++|| +|||++++.+.++.+++.++++++++++.+++.|+++
T Consensus 33 ~p~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 108 (471)
T PRK10504 33 LPSMAQSLGES---PLHMHMVIVSYVLTVAVMLPASGWLADR-VGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQ 108 (471)
T ss_pred HHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 78999999994 4478999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|+++.++.....++|..++|.+ +.+.++.+||+.|++......+..+......|+.
T Consensus 109 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 109 GVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNY 188 (471)
T ss_pred HhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999998 5777788999999998877666555555555654
Q ss_pred hHHHHhcCCHHHHHHHHHH------HHhhcCCccccccccCc-------------ccccccccccchhHHHHHHhchHHH
Q 040646 251 PRWLFIQGRKEEAVSIIKS------ISTSENQRSLIMDFNNV-------------SFEQETWNVDLYSAIKILVEKKWAL 311 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (509)
+. .+.+.+........ .....+.+......... ...++.+.+++..+. +++++|.++
T Consensus 189 ~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~ 264 (471)
T PRK10504 189 TM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARNNNRALFSL-KLFRTRTFS 264 (471)
T ss_pred cc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhcCCCCccCH-HHhcccchH
Confidence 32 11122211110000 00000000000000000 000011111111122 478888876
Q ss_pred HHHHHHHHHHHHHhHhhhcccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646 312 RRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC 387 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~ 387 (509)
......++.++......+..|++.+. .|.++...... ..++.+++.++.+++.||+|||+.+..+..+.++...++
T Consensus 265 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~ 344 (471)
T PRK10504 265 LGLAGSFAGRIGSGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLF 344 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence 66665666666555555666777663 67665544333 335566677889999999999999988887777766655
Q ss_pred HHhccch-hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 388 VVMGKIW-TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 388 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.+..... ........++.+++.+..++....+..+..|++.++.+.++.++...+|..++|.+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g 410 (471)
T PRK10504 345 MLVALLGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG 410 (471)
T ss_pred HhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 5543222 2222222333335555566677788888999999999999999999899888888876
No 42
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.2e-30 Score=251.83 Aligned_cols=367 Identities=15% Similarity=0.148 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchh
Q 040646 33 AQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLP 112 (509)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (509)
..+.++..+++.++....|..+++.. .+..+.+|.+. ...+.+.+
T Consensus 42 ~dl~i~~~~~~~y~~~~~d~~si~~a--------------------------------~l~g~~edl~~---~~~~l~~~ 86 (495)
T KOG2533|consen 42 LDLFILPFLCYLYFHAYLDKSSIVNA--------------------------------SLSGLKEDLKL---VGNQLGVL 86 (495)
T ss_pred HHHHHHHHHHHHHHHHhcchhcchhH--------------------------------HHcCCccccch---hhhhhhhH
Confidence 33444556677777777777666553 24456788888 44589999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccC
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGK 192 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 192 (509)
.++|+++++++++++|.+.|| ++..+.+....+++++.+++....+|++.+++.|++.|+.++..+|....+++.|+.+
T Consensus 87 ~t~F~v~Yii~~~p~~~L~~r-~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~wy~~ 165 (495)
T KOG2533|consen 87 DTVFYVGYIIGQFPSGLLGDR-FPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGNWYGK 165 (495)
T ss_pred HHHHHHHHHHHHhhHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHhhcCh
Confidence 999999999999999999999 9999999999999999998988899999999999999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHH-------hcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAIAYI-------NRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS 265 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~~~~-------~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 265 (509)
++|++.++++.+..++|.++|+++++. ....||||.|++.+++.++.+++.++++|+.|....- .+.+|..-
T Consensus 166 ~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~f-l~~~ek~~ 244 (495)
T KOG2533|consen 166 SERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWF-LTDEEKEL 244 (495)
T ss_pred hhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccc-cchHHHHH
Confidence 999999999999999999999999755 4567999999999999999999999999999861100 11111111
Q ss_pred HHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHHH
Q 040646 266 IIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYL 344 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 344 (509)
..++.+. .+. . ...++.++..+++.+++|..|...+..++.....+...+.+|+++++ .+++...
T Consensus 245 ~~~~~~~-~~~------------~-~~~~~~~~~~~~~a~~dp~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~ 310 (495)
T KOG2533|consen 245 VVERLRE-SPS------------G-GIENKFKWKGFKEALKDPGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQ 310 (495)
T ss_pred HHHHHHh-ccC------------C-CcccccCHHHHHHHHhchhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHH
Confidence 1111211 110 0 00111455678999999998888888888877777777888888887 4465443
Q ss_pred ---HHHHHHhhhhhHHHHHHHHhhh----cCchhHHHHHHHHHHHHH-HHHHHhccchhHHHHHHHHHHHHHHHHHhHHH
Q 040646 345 ---SVTFNALSELPASLITFFLIGK----LKRKSSLLGFTIMSGVCS-VLCVVMGKIWTSVEIGLELVAFFSACTAFSLL 416 (509)
Q Consensus 345 ---~~~~~~~~~~~~~~~~g~l~dr----~gr~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (509)
......++++++.+++|+++|| ..+|........+..+.. +.+... ..........+.+..+.....+..
T Consensus 311 a~~ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 388 (495)
T KOG2533|consen 311 ANLLSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAA--AVLPGAYGAFLIGPYGLIATAIIA 388 (495)
T ss_pred hccccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--ccchHHhHHHHhcchhhHHHHHHH
Confidence 3455668999999999999999 555655555555444443 333332 222222222333334444555566
Q ss_pred Hhhcccccchhhhhh-HHHHHHHHHhHhhHHHHHHHH
Q 040646 417 LIYTLELFPTCVRNS-AISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 417 ~~~~~~~~p~~~r~~-~~g~~~~~~~~g~~i~p~~~~ 452 (509)
....++....+.|.. ..+........+++++|.+..
T Consensus 389 ~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~ 425 (495)
T KOG2533|consen 389 LSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFR 425 (495)
T ss_pred HhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcc
Confidence 666777665554444 444445555677777766664
No 43
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.97 E-value=1.9e-29 Score=246.68 Aligned_cols=339 Identities=21% Similarity=0.242 Sum_probs=243.1
Q ss_pred CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
..|.+.+|+|. +..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++
T Consensus 27 ~~p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 102 (385)
T TIGR00710 27 AFPEIAADLST---PASIVQMTLTLYLLGFAAGQLLWGPLSDR-YGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFV 102 (385)
T ss_pred cHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 37899999999 44589999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+ +.+.+..+||+.|++.++..++..+...+..||
T Consensus 103 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (385)
T TIGR00710 103 QAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPE 182 (385)
T ss_pred HHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999998 566777899999999888877766566566777
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY 329 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (509)
+++. ++++ +.++...+.+++++++.++...+...+..........
T Consensus 183 ~~~~----~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (385)
T TIGR00710 183 TLPY----EARI-------------------------------QISTYFETFLLLLKSKMFWGYALIYGASFGGFFAFFS 227 (385)
T ss_pred CCCC----cccC-------------------------------CHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 5421 0000 0001112456677777765554444443333333333
Q ss_pred ccccccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc--c-chhHHHHHHH
Q 040646 330 GMPLGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG--K-IWTSVEIGLE 402 (509)
Q Consensus 330 ~~~~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~ 402 (509)
..|.+.+ ..+.++.... ....++.+++.++.+++.||+++|+.+..+..+..++.+++.... . ..........
T Consensus 228 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (385)
T TIGR00710 228 GAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILGLGSWAMIIGPM 307 (385)
T ss_pred cChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 3454443 5666654443 344577888999999999999999988877766666655544422 1 1122222223
Q ss_pred HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHH
Q 040646 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVI 469 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~ 469 (509)
.+.+++.+...+.......|..| +.++++.++.+.....++.+.+.+.+.........+.......
T Consensus 308 ~~~g~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~ 373 (385)
T TIGR00710 308 MFVGIGNSMISSIAMAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLSCLVL 373 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHH
Confidence 33445555566677778888887 5689999998888765444444444433333334444433333
No 44
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=99.97 E-value=2.7e-29 Score=242.13 Aligned_cols=344 Identities=11% Similarity=0.008 Sum_probs=237.7
Q ss_pred Ccceee-eeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----hHHHHHH
Q 040646 92 HTSIIS-EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----TNMWIYS 165 (509)
Q Consensus 92 ~~~i~~-~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~ 165 (509)
.+.+.+ |+|+ +..|.+++.+++.+++.++.++.|++.|| +|.|+++.++.+++++.+++.+++ ++++.++
T Consensus 57 ~~~~~~~~~~l---s~~q~g~l~ai~~l~~al~rip~G~l~Dr-~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~ll 132 (462)
T PRK15034 57 TVNLNKIGFNF---TTDQLFLLTALPSVSGALLRVPYSFMVPI-FGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFI 132 (462)
T ss_pred HHHhhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHH
Confidence 466655 8999 44589999999999999999999999999 999999999999999999999987 8999999
Q ss_pred HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-----H-Hhc-------------CCcch
Q 040646 166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-----Y-INR-------------GSSWR 226 (509)
Q Consensus 166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-----~-~~~-------------~~~wr 226 (509)
+.|++.|++ +..++.....+++|+|+++||+++|+.....++|..+++++. . +.. ..+||
T Consensus 133 i~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~ 211 (462)
T PRK15034 133 VIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLA 211 (462)
T ss_pred HHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHH
Confidence 999999998 778999999999999999999999999766666655444332 1 111 33488
Q ss_pred HHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHh
Q 040646 227 RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE 306 (509)
Q Consensus 227 ~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (509)
.+.++..++.++..++.+++.++.|. . +......++.+|
T Consensus 212 ~~~~~~~~~~iv~~i~~~~~~~~~~~-----~------------------------------------~~~~~~~~~vlk 250 (462)
T PRK15034 212 NAAWIWVPLLAIATIAAWSGMNDIAS-----S------------------------------------RASIADQLPVLQ 250 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCccc-----c------------------------------------ccCHHHHHHHhC
Confidence 88888777777766666665554331 0 001123566888
Q ss_pred chHHHHHHHHHHHHHHHHhHhhhccccccccCC-c-hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 040646 307 KKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLS-F-NLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCS 384 (509)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~-~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~ 384 (509)
+|..|...+..+..+.+.....+.+|++.++.- . +......+..+...+.++++|+++||+|+++++.++.+.+.++.
T Consensus 251 ~~~~Wllslly~~tFG~fvg~s~~lp~~~~~~~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~ 330 (462)
T PRK15034 251 RLHLWLLSLLYLATFGSFIGFSAGFAMLAKTQFPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFS 330 (462)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHH
Confidence 888776666665554444444445565554411 1 11222334456778888999999999999999988887666665
Q ss_pred HHHH-Hhccc---hhHHHHHHHHHHHHHHHHHhHHHHhhcccccch---------------------hhhhhHHHHHHHH
Q 040646 385 VLCV-VMGKI---WTSVEIGLELVAFFSACTAFSLLLIYTLELFPT---------------------CVRNSAISMVRQA 439 (509)
Q Consensus 385 ~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~g~~~~~ 439 (509)
..+. ..+.. ........++..++..+......+-++++.+|+ ++-|.+.|+....
T Consensus 331 ~~~~l~lp~~~~~~~~~~~~~~~~l~~~~G~gngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~ 410 (462)
T PRK15034 331 ALLFLTLPGTGSGNFIAFYAVFMGLFLTAGLGSGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAI 410 (462)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcccchHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHH
Confidence 4332 22221 222222222233334444445566666676664 1467788999999
Q ss_pred HhHhhHHHHHHHHhhc---ccchhHHHHHHHHHHHHHHHHhhccC
Q 040646 440 LVFGGVFSPVLVAAGR---QNNFLSYGIFGLVIGLCGLFVIGLPE 481 (509)
Q Consensus 440 ~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (509)
+.+|+++.|.+.+... ..+...+..+.+..+++.++.++...
T Consensus 411 G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 411 GAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred HHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999998877322 33444566666666666666554433
No 45
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.97 E-value=1.3e-29 Score=251.17 Aligned_cols=397 Identities=14% Similarity=0.063 Sum_probs=250.0
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL 111 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 111 (509)
+.++..+..+.+.+...+.+.....+. .|.+++ +|+ +..+.++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~~~~-~g~---s~~~~g~ 65 (438)
T TIGR00712 23 RLRWQVFLGIFFGYAAYYLVRKNFALA---------------------------------MPYLVE-QGF---SKGELGF 65 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHhh---------------------------------hHHHHH-cCC---CHhHhHH
Confidence 345555666666666666666555553 566665 588 4558999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----TNMWIYSVLRFINGFGRATIGTCAIVLST 187 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 187 (509)
+.+++.++..+++++.|+++|| +|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+..++.....+.
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~ 144 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMV 144 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhc-cCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 9999999999999999999999 999999999999999998887764 46788889999999999998888889999
Q ss_pred eeccCcccchhhhhhHHHHHHHHHHHHHH-HHHh-cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646 188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYIN-RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS 265 (509)
Q Consensus 188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 265 (509)
|++|+++|++++++++.+..+|..+++.+ +... ...+||..|++.+++.++..+..++++||+|+.... +..+.
T Consensus 145 ~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~-- 220 (438)
T TIGR00712 145 HWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGL--PPIEE-- 220 (438)
T ss_pred HhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCC--CCchh--
Confidence 99999999999999999999999888776 4433 346899999999988887666667778887753100 00000
Q ss_pred HHHHHHhhcCCccccccccCcccccccccccchhH-HHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHH
Q 040646 266 IIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA-IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLY 343 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~ 343 (509)
. +++ ...+. ..+.+. +.+.+.. .+.+++++.++...+...+.+..........|.++++ .|.+..
T Consensus 221 ----~---~~~--~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~ 287 (438)
T TIGR00712 221 ----Y---RND--YPDDY---NEKAEQ-ELTAKEIFMQYVLPNKLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALD 287 (438)
T ss_pred ----c---ccc--ccccc---cccccc-ccchHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChh
Confidence 0 000 00000 000000 0011111 2246677766655554444444433344445666554 566654
Q ss_pred HH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHH---HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHH
Q 040646 344 LS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSG---VCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLL 417 (509)
Q Consensus 344 ~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (509)
.. .....+.++++.++++++.||+++++....+..... ++...+......+.+......+..++..........
T Consensus 288 ~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 367 (438)
T TIGR00712 288 KSSWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMNPAGNPLVDMICMIVIGFLIYGPVMLIG 367 (438)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHccHHHHHH
Confidence 33 344557788999999999999964432222222211 111111221111222211111111121111112223
Q ss_pred hhcccccchhhhhhHHHHHHHHHhHhh-HHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646 418 IYTLELFPTCVRNSAISMVRQALVFGG-VFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-IGLPETR 483 (509)
Q Consensus 418 ~~~~~~~p~~~r~~~~g~~~~~~~~g~-~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 483 (509)
....|.+|++.|+++.|+.+....+|+ .++|.+.+.. ..++...+.+.+++.+++.+.. +..+|.|
T Consensus 368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 457799999999999999998887764 5788887732 2334455555555554444443 4445543
No 46
>PRK03699 putative transporter; Provisional
Probab=99.97 E-value=1.2e-29 Score=247.93 Aligned_cols=369 Identities=14% Similarity=0.094 Sum_probs=252.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchh
Q 040646 33 AQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLP 112 (509)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (509)
.|+++...+++++++.+.+....... +|++.+++|+ +..+.+++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------------------------------~~~i~~~~~~---s~~~~g~~ 47 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMV---------------------------------MGPIAEYFNL---PVSSMSNT 47 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhh---------------------------------hHHHHHHhCC---CHHHHHHH
Confidence 34566667777888888876656554 7999999999 55589999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccC
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGK 192 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 192 (509)
.+.+.+++.+++++.|++.|| +|||+++..+.++.+++.++++++++++.+++.|++.|++.+...+....++.|++|+
T Consensus 48 ~s~~~~~~~i~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~ 126 (394)
T PRK03699 48 FTFLNAGILISIFLNAWLMEI-IPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEG 126 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhhhccc
Confidence 999999999999999999999 9999999999999999999999999999999999999999999998899999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHH-HHHh-cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHH
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAI-AYIN-RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSI 270 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~ 270 (509)
++|+++++..+....+|..++|.+ +.+. ...+||+.|.+.+++.++..++.++ ++.|+. ++.
T Consensus 127 ~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~----~~~---------- 190 (394)
T PRK03699 127 KQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPAL----GKH---------- 190 (394)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccc----ccc----------
Confidence 999999999988899998888887 5554 4579999999888877765433321 222210 000
Q ss_pred HhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-ccCCchHHHHHH--
Q 040646 271 STSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLYLSVT-- 347 (509)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~-- 347 (509)
++ ++ +++. . ++.+ ++..+...+..++............|.++ +..|.+......
T Consensus 191 ---~~-----~~------~~~~-~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~ 247 (394)
T PRK03699 191 ---AP-----KA------DKPV-A-------KEKW-GIGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLV 247 (394)
T ss_pred ---Cc-----cc------cCcc-c-------cccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHH
Confidence 00 00 0000 0 0001 12222222222222223333334456555 456777655433
Q ss_pred -HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch
Q 040646 348 -FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT 426 (509)
Q Consensus 348 -~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (509)
...++.+++.++.++++||+++|+.+.....+..+...++.... +........++.++..+..++...++..|..|.
T Consensus 248 ~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 325 (394)
T PRK03699 248 SNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD--DPSHLLYAILGLGFFSSAIYTTIITLGSQQTKV 325 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 34467889999999999999999988877666555544443322 222222233334444455566666667776664
Q ss_pred hhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhcc
Q 040646 427 CVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 427 ~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
+ ++...+.......+|..++|.+.+.. ..+....+...+++.+++.+..+..+
T Consensus 326 ~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (394)
T PRK03699 326 A-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLG 380 (394)
T ss_pred C-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHH
Confidence 3 56778888888899999999998832 23444555555555555544444443
No 47
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.97 E-value=2.1e-30 Score=250.12 Aligned_cols=325 Identities=21% Similarity=0.286 Sum_probs=237.6
Q ss_pred Cc-ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 92 HT-SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 92 ~~-~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
.| .+.+++|. +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++..+++|++.+++.|++
T Consensus 19 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (352)
T PF07690_consen 19 LPLYLAEELGL---SPSQIGLLFSAFFLGSALFSPFAGYLSDR-FGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFL 94 (352)
T ss_dssp HH-HHHCCSTT---TSHCHHHHHHHHHHHHHHHHHHHHHHHHH-S-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccc
Confidence 56 78899999 55589999999999999999999999999 999999999999999997777777888899999999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.++ .+.+..+||+.|++.+++.++..++...++++
T Consensus 95 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 95 LGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred cccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhh
Confidence 99999999999999999999999999999999999999999999995 55567899999999999998876654455655
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchh-HHHHHHhchHHHHHHHHHHHHHHHHhHhh
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYS-AIKILVEKKWALRRLSAIMVTGFGIGMVY 328 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (509)
+|+. +.++ ++ .+++ .+++++.. .++.+++++..+......+...+......
T Consensus 175 ~~~~-----~~~~-----------~~---~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (352)
T PF07690_consen 175 PPPP-----RERE-----------SP---KESE---------SKKPKPLKPGFKSLFKNPVLWILLIAFFLFFFVFSGFS 226 (352)
T ss_dssp -STT-----TT-------------SS---TTTT-----------HHHCCCH-CTHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred cccc-----cccc-----------cc---cccc---------cccccccccccccccccchhhhhhhhhhHHHHHHHHhh
Confidence 4321 0000 00 0000 00011111 24556666654423333333333444444
Q ss_pred hccccc-cccCCch-HHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHH
Q 040646 329 YGMPLG-LGSLSFN-LYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI-WTSVEIGLE 402 (509)
Q Consensus 329 ~~~~~~-~~~~g~~-~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 402 (509)
...|.+ .+..+.+ ..... .+..+..+++.++.+++.||+++|+..........+..+.+...... +........
T Consensus 227 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (352)
T PF07690_consen 227 FFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFSSSPVWLIIAL 306 (352)
T ss_dssp HHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHHCHHHHHHHHH
T ss_pred cccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 555554 5556666 44444 44456667778999999999999887777666666665555443222 223333334
Q ss_pred HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHH
Q 040646 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSP 448 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p 448 (509)
++.+++.+...+....+..|..|+++++++.|+.+....+|..++|
T Consensus 307 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 307 FLIGFGFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4455566677888999999999999999999999999999999988
No 48
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=99.97 E-value=2.7e-29 Score=244.00 Aligned_cols=360 Identities=17% Similarity=0.179 Sum_probs=262.2
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhh
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--MWIYSVLRFINGF 173 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~ 173 (509)
..+|++ ++.+.+++.++++.|+.+++++.|+++|| +|-|+++..+.++.++++++..++.+ ++.+++.|+++|+
T Consensus 65 ~~~~~w---s~~~k~~i~ss~~~G~i~~~iP~g~l~~k-~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl 140 (466)
T KOG2532|consen 65 AGEYDW---SSTEKGLIFSSFFWGYILGQIPGGYLADK-FGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGL 140 (466)
T ss_pred CceecC---CHHHHHHHHHHHHHHHHHHHcCcHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHH
Confidence 678999 44588999999999999999999999999 99999999999999999999998764 5688999999999
Q ss_pred ccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-SSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 174 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
+.|..+|....+.++|.|++||++..++..++..+|.+++.++ |++.+. .||+.+|++.++.+++..++..++..|+|
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P 220 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSP 220 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 9999999999999999999999999999999999999998877 677777 89999999999999998888778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcc
Q 040646 252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGM 331 (509)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
.. ++.. ..++++++.+... ++..+++...+++++++++.+|...+..+....+......+.
T Consensus 221 ~~---h~~i--s~~El~~I~~~k~--------------~~~~~~~~~vP~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~ 281 (466)
T KOG2532|consen 221 SK---HPNI--SEKELKYIEKGKS--------------EAHVKKKPPVPYKAILTSPPVWAIWISAFGGNWGFYLLLTYL 281 (466)
T ss_pred cc---CCCC--CHHHHHHHHhccc--------------ccccCCCCCCCHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 52 1111 1122223322111 000111145689999999987776666665555555555555
Q ss_pred ccccc-cCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCc---------hhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646 332 PLGLG-SLSFNLYLSVTFNA---LSELPASLITFFLIGKLKR---------KSSLLGFTIMSGVCSVLCVVMGKIWTSVE 398 (509)
Q Consensus 332 ~~~~~-~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
|.|++ .++++....+.+.+ +...+..+++|.++||+.+ |..-.++....+++++.+.+.+.......
T Consensus 282 PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a 361 (466)
T KOG2532|consen 282 PTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLA 361 (466)
T ss_pred hHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHH
Confidence 66665 47887666655544 6777888899999998755 22334566666666666666655444333
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc-c----cchhHHHHHHHHHHHHH
Q 040646 399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR-Q----NNFLSYGIFGLVIGLCG 473 (509)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~-~----~~~~~~~~~~~~~~~~~ 473 (509)
+.+..+.....+...+....-..+. .+++.+..+|+.+....+.++++|.+.+... . .+...|.+.+++.+++.
T Consensus 362 ~~~l~~~~~~~g~~~~Gf~~~~~~~-apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~ 440 (466)
T KOG2532|consen 362 VILLTIAIGLSGFNISGFYKNHQDI-APQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGN 440 (466)
T ss_pred HHHHHHHHHHcccchhhhHhhhhhc-cchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3333332222222222222222232 4577899999999999999999999998332 2 34456777777777776
Q ss_pred HHHhhc
Q 040646 474 LFVIGL 479 (509)
Q Consensus 474 ~~~~~~ 479 (509)
+++.+.
T Consensus 441 i~f~~f 446 (466)
T KOG2532|consen 441 IIFLFF 446 (466)
T ss_pred hheeEe
Confidence 655444
No 49
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.97 E-value=9.6e-30 Score=248.07 Aligned_cols=342 Identities=18% Similarity=0.156 Sum_probs=236.1
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
.|.+.+++|+ +..+.|++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++++++++++.+++.|++.
T Consensus 18 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (379)
T TIGR00881 18 MPYLVEEIGL---SKTDLGLLLSSFSIAYGISKFVMGSVSDR-SNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALN 93 (379)
T ss_pred hHHHHHHhCC---CHhHHHHHHHHHHHHHHhhhhhhhHHHHh-hCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7899999999 44589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHH-H-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPA-I-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~-~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
|++.+...+...+++.|++|+++|++++++.+.+..+|..+++. + +.+....+||+.|++.+++.++..+...++.||
T Consensus 94 g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (379)
T TIGR00881 94 GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRD 173 (379)
T ss_pred HhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCC
Confidence 99999999999999999999999999999999999999999994 5 455667899999999888887766677778888
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY 329 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (509)
+|+.. +..++ ++ ...++.++.+.+++++.+......+++++++..+...+..++..........
T Consensus 174 ~~~~~---~~~~~-----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (379)
T TIGR00881 174 SPQSC---GLPPA-----------EE--MPNEEPDGDAEKKEEELTKKQIFLQYVLLNKVLWYISLGYVFVYVVRTGILD 237 (379)
T ss_pred Ccccc---ccCcc-----------cc--CcccccccccccccccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 76411 00000 00 0000000000001111112223456677888766555555544444443333
Q ss_pred cccccc-ccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCc-hhHHHH-HHHH-HHHHHHHHHHhccchhHHHHHHH
Q 040646 330 GMPLGL-GSLSFNLYLS---VTFNALSELPASLITFFLIGKLKR-KSSLLG-FTIM-SGVCSVLCVVMGKIWTSVEIGLE 402 (509)
Q Consensus 330 ~~~~~~-~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr-~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
..|.+. +..+.+.... .....++.+++.++.+++.||..+ |+.... .... ..++...................
T Consensus 238 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (379)
T TIGR00881 238 WSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNPAANPLMDLICL 317 (379)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHH
Confidence 444444 4456654433 344557788999999999998643 332222 1111 11221222121122222222222
Q ss_pred HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
+..++......+....+..|..|++.|+++.|+.+....+|+.++|.+.+.
T Consensus 318 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~ 368 (379)
T TIGR00881 318 FALGFLVYGPQMLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGY 368 (379)
T ss_pred HHHHHHHhhhhHHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHH
Confidence 222222333344556788999999999999999999999999999998873
No 50
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.97 E-value=1.4e-28 Score=239.50 Aligned_cols=331 Identities=14% Similarity=0.136 Sum_probs=228.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+|+|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++++++|++.+++.|+++
T Consensus 29 lp~~~~~~~~---s~~~~G~~~s~~~l~~~~~~~~~g~l~dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 104 (381)
T PRK03633 29 VPLWLAQEHL---PTWQVGVVSSSYFTGNLVGTLLAGYVIKR-IGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVA 104 (381)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 7899999999 45589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAY-INRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+.....+.+..++++|+++++++..+.++|..+++.++. +.....|+.. +..+..............+++
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 183 (381)
T PRK03633 105 GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELMSVLP-WVTGLVLAAILPLLFTRILNQ 183 (381)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHHHHHHHhcccCC
Confidence 99999988888777888899999999999999999999999999954 4333223332 222222222111111111111
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
+ . + ++ +..+.++.+++|.++......+.........+..
T Consensus 184 ~------~----------------~---------------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (381)
T PRK03633 184 Q------A----------------E---------------NH----DSTSIWPMLKLRQARLGVNGCIISGIVLGSLYGL 222 (381)
T ss_pred C------C----------------C---------------CC----CCCCHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 0 0 0 00 0012455667766543332233333333334445
Q ss_pred cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+|.+.++.|.+..... ....++.+++.+..+++.||+++|+.+..+..+..++.+.+. .. ....... .+.+.
T Consensus 223 lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~--~~~~~~~-~l~g~ 297 (381)
T PRK03633 223 MPLYLNHQGMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ--AAMAPAL-FILGA 297 (381)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh--HHHHHHH-HHHHH
Confidence 6777777777655443 344467788999999999999999988877766666554332 11 1111122 22223
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHH
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCG 473 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~ 473 (509)
+....++...+...|..|+++++...+..+....+|..++|.+.+.. ..+....+.+.+.+.++..
T Consensus 298 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 298 AGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 33345677778888999988888888888888899999999998833 3344455566555555443
No 51
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.97 E-value=3.4e-29 Score=242.92 Aligned_cols=326 Identities=13% Similarity=0.049 Sum_probs=242.6
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-----HHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-----NMWIYSV 166 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-----~~~~l~~ 166 (509)
+|.+..|++. +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.++..+.+ +++.+++
T Consensus 22 ~~~~~~~~~~---s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (365)
T TIGR00900 22 LPLYVLAGTG---SASVLSLAALAGMLPYVVLSPIAGALADR-YDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYV 97 (365)
T ss_pred HHHHHHHhhc---cHHHHHHHHHHHHHHHHHHHHhhhHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 4566667777 55589999999999999999999999999 9999999999999999999988888 9999999
Q ss_pred HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF 245 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 245 (509)
.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|.+ +.+.+..+||+.|++.++..++..+....
T Consensus 98 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 98 LAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 56667789999999887766654433322
Q ss_pred e-ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646 246 L-VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI 324 (509)
Q Consensus 246 ~-~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (509)
. .||.++ +++.+..+ +..++....++.++++|..+......++.....
T Consensus 178 ~~~~~~~~----~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (365)
T TIGR00900 178 VRIPELAA----SEIQALSN---------------------------AVLRDTREGIKFVLKNPLLRTLLLLALLFNLVF 226 (365)
T ss_pred cccccCCC----ccccccch---------------------------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence 2 232211 00000000 000011224566778887665555555444444
Q ss_pred hHhh-hcccccccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646 325 GMVY-YGMPLGLGS-LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI 399 (509)
Q Consensus 325 ~~~~-~~~~~~~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
.... ...|++.++ .+.+.... .....++.+++.++.+++.||.+||+.+..+..+.+++...+.+... +.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 305 (365)
T TIGR00900 227 APAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTPP-NFPLFL 305 (365)
T ss_pred HHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhch-hHHHHH
Confidence 3333 455666654 56654433 34445777888999999999999999888777666666665555332 233333
Q ss_pred HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
...++.+++.+...+...++..|..|++.|+++.|+.+....++..++|.+.+.
T Consensus 306 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~ 359 (365)
T TIGR00900 306 VLWFAIGVGYGPINVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGP 359 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555666667788899999999999999999999999999999998873
No 52
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.97 E-value=2.5e-29 Score=247.87 Aligned_cols=361 Identities=15% Similarity=0.054 Sum_probs=250.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-----HhHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-----STNMWIYSV 166 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~ 166 (509)
.|.+.++++. +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+..+. .++++.+++
T Consensus 40 ~~~~~~~~~~---s~~~~g~~~~~~~l~~~~~~~~~G~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 115 (417)
T PRK10489 40 VPVQIQMMTG---STLQVGLSVTLTGGAMFIGLMVGGVLADR-YDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYL 115 (417)
T ss_pred HHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHhhHHHhhh-cCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 4666677776 55589999999999999999999999999 99999999988887777665543 467899999
Q ss_pred HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF 245 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 245 (509)
.|++.|++.+...+...+++.|++|+++|+++.++......+|..++|.+ +.+.+..+|++.|++.++..++.. +..+
T Consensus 116 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 194 (417)
T PRK10489 116 LGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITL-LPLL 194 (417)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH-HHHH
Confidence 99999999888888889999999999999999999999999999999998 466666789999988777766644 3445
Q ss_pred eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh
Q 040646 246 LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG 325 (509)
Q Consensus 246 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (509)
.+||+++. +.+.++ ..++....++.++++|.++...+..+..... .
T Consensus 195 ~l~~~~~~---~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 240 (417)
T PRK10489 195 RLPALPPP---PQPREH------------------------------PLRSLLAGFRFLLASPVVGGIALLGGLLTMA-S 240 (417)
T ss_pred hCCCCCCC---Cccccc------------------------------chHHHHHHHHHHHcChHHHHHHHHHHHHHHH-H
Confidence 66765321 000000 0001112345566777654444333332222 2
Q ss_pred Hhhhcccccccc-CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Q 040646 326 MVYYGMPLGLGS-LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGL 401 (509)
Q Consensus 326 ~~~~~~~~~~~~-~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (509)
......|.+.++ .|.+..... ...+++.+++.++.+++.||.++++.+..+.++.+++.+.+... ++.......
T Consensus 241 ~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~ 318 (417)
T PRK10489 241 AVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLM--PMWILAVLC 318 (417)
T ss_pred hHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHcc--chHHHHHHH
Confidence 223334555555 676654443 34457788889999999999777777777766666665554442 222222233
Q ss_pred HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHH-HHHHHhh
Q 040646 402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGL-CGLFVIG 478 (509)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~ 478 (509)
.++.+++.+...+...++..|..|++.|++++|+.+....+|..++|.+.+... .+....+.+.+++.++ +.+....
T Consensus 319 ~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 398 (417)
T PRK10489 319 LALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLV 398 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHh
Confidence 333334444444566788899999999999999999999999999999988332 2334445555544444 3444466
Q ss_pred ccCCCCCCCcccHHH
Q 040646 479 LPETRDTQLSDTMDE 493 (509)
Q Consensus 479 ~~~~~~~~~~~~~~~ 493 (509)
+++.|+++.+|.+++
T Consensus 399 ~~~~~~~~~~~~~~~ 413 (417)
T PRK10489 399 LGELRRFRQTPPEVD 413 (417)
T ss_pred cccccccccccccCC
Confidence 688777776665443
No 53
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.4e-31 Score=244.40 Aligned_cols=359 Identities=17% Similarity=0.214 Sum_probs=252.3
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646 31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG 110 (509)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 110 (509)
++..++.+.++++..+++..|...+..+ .+.+++.||++ ....|
T Consensus 28 ~~~~~~~l~il~~vnlmny~Dr~~iagv---------------------------------~~~v~~~fni~---~s~~G 71 (493)
T KOG1330|consen 28 MKSPTLTLVILCLVNLMNYADRYTIAGV---------------------------------LKEVQTYFNIS---DSELG 71 (493)
T ss_pred cccchHHHHHHHHHHHHHHhhhhhhhhh---------------------------------hHHHHHhcCCC---chhcc
Confidence 3567788889999999999999888775 89999999994 44789
Q ss_pred hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646 111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELV 190 (509)
Q Consensus 111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 190 (509)
++.+.+.+.+.+++|++|+++|| |+||+++.+|..+|.++.++++++..||+++++|.+.|+|.+...++++++++|.+
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadr-yNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f 150 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADR-YNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIADSF 150 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhh-cCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhhcC
Confidence 99999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc-chHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHH
Q 040646 191 GKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS-WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIK 268 (509)
Q Consensus 191 ~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~ 268 (509)
|..+|++.+++++.+.++|..+|.+.+ .+....+ |||.|+..+++.++.+++..++.+|+++ +..++.
T Consensus 151 ~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r-----ga~~~~----- 220 (493)
T KOG1330|consen 151 PDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER-----GARDEV----- 220 (493)
T ss_pred cchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc-----cccccc-----
Confidence 999999999999999999999988885 3434333 9999999999999999999899998753 111110
Q ss_pred HHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccc----ccccCCch---
Q 040646 269 SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPL----GLGSLSFN--- 341 (509)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~g~~--- 341 (509)
++ +. +...+......+.+.+.+++.+....+......+..+...|..|. ..+-.+++
T Consensus 221 -----~~------~~-----~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~~~ 284 (493)
T KOG1330|consen 221 -----DG------EN-----KMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDHNA 284 (493)
T ss_pred -----cc------CC-----cCCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcccc
Confidence 00 00 001111122334555566565544444444444433333333222 11222222
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhcCch----hHHHH-------HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 040646 342 LYLSVTFNALSELPASLITFFLIGKLKRK----SSLLG-------FTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSAC 410 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr~----~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (509)
....+.++..++.+|.+++|.++||+.|+ ..... +..+.+....+.........+..+++++++.....
T Consensus 285 ~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~~~s~~~~~il~~~g~~~~~ 364 (493)
T KOG1330|consen 285 TLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFTSSSMIFGLILFLVGETISW 364 (493)
T ss_pred chhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence 23345566688889999999999995321 11111 11122222222222223233333333444434444
Q ss_pred HHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHH
Q 040646 411 TAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVA 452 (509)
Q Consensus 411 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~ 452 (509)
..++....+..|+.|++.|.++.++...+. .+|.+-+|.+.|
T Consensus 365 ~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivG 407 (493)
T KOG1330|consen 365 FNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVG 407 (493)
T ss_pred cccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceeh
Confidence 445566678889999999999999988766 556556665555
No 54
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.97 E-value=8.6e-29 Score=241.13 Aligned_cols=328 Identities=17% Similarity=0.164 Sum_probs=230.7
Q ss_pred CCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040646 89 LQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168 (509)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 168 (509)
.|.+|.+.+++|+ +..+.+++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|
T Consensus 11 ~p~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 86 (377)
T PRK11102 11 LPALPVIAADFGV---SAGSVQMTLSAYILGFAIGQLFYGPMADS-FGRKPVILGGTLVFALAAVACALAQTIDQLIYMR 86 (377)
T ss_pred hccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhchHHhh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 4568999999999 45589999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+ +.+.+..+||+.|++.+++.++..+...+++
T Consensus 87 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (377)
T PRK11102 87 FLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFI 166 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999998 4666778999999998888777665666667
Q ss_pred cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646 248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV 327 (509)
Q Consensus 248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (509)
||+++. +++++ .+.++...++++.++++..+...+...+...+....
T Consensus 167 ~~~~~~----~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (377)
T PRK11102 167 PETLPK----ERRQP-----------------------------FHLRTTIRNFASLFRHKRVLGYMLASGFSFAGMFSF 213 (377)
T ss_pred CccCcc----cccCC-----------------------------CChHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHH
Confidence 775320 00000 000011124566777776554444333333333222
Q ss_pred hhccc-cccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc--cchhHHHHHH
Q 040646 328 YYGMP-LGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG--KIWTSVEIGL 401 (509)
Q Consensus 328 ~~~~~-~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 401 (509)
....| ++.+..|.+..... ....+..+++.++.+++.||+|||+.+..+..+..+..+.+.... ....+.....
T Consensus 214 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (377)
T PRK11102 214 LTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWALVVG 293 (377)
T ss_pred HHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22233 33444566655443 344577788899999999999999988877765444333322211 1111211111
Q ss_pred HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHHhh
Q 040646 402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVAAG 454 (509)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~~~ 454 (509)
..+.........+.......|..| +.++++.++.+... .+|..+++.+....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~g~~~~~~~ 346 (377)
T PRK11102 294 VAAFVGCVSMISSNAMAVILDEFP-HMAGTASSLAGTLRFGIGAIVGALLSLAP 346 (377)
T ss_pred HHHHHHHHHHhhHHHHHHHhcccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 112222222333344556677776 77899999877664 56777777776533
No 55
>PRK12382 putative transporter; Provisional
Probab=99.97 E-value=4.4e-28 Score=237.17 Aligned_cols=336 Identities=15% Similarity=0.098 Sum_probs=227.8
Q ss_pred Ccc-eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH--------HhHHH
Q 040646 92 HTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF--------STNMW 162 (509)
Q Consensus 92 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~--------~~~~~ 162 (509)
+|. +++|+|+ +..+.|++.+++.+++.++++++|+++|| +|||++++.+.+...++.+.... .++++
T Consensus 38 l~~~l~~~lg~---s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (392)
T PRK12382 38 IPLFVHHDLGF---GNTMVGIAVGIQFLATVLTRGYAGRLADQ-YGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFA 113 (392)
T ss_pred hhHHHHHhcCC---cHHHHHHHHHHHHHHHHHHhhhhhHHHHh-hcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 454 6789999 55689999999999999999999999999 99999999998887776553322 36889
Q ss_pred HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHH
Q 040646 163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCI 241 (509)
Q Consensus 163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~ 241 (509)
.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|.+++|+++ .+....|||..+.+..+..++..
T Consensus 114 ~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~- 192 (392)
T PRK12382 114 LLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAW- 192 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHH-
Confidence 9999999999999998888889999999999999999999999999999999994 66677899988776555443322
Q ss_pred HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646 242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG 321 (509)
Q Consensus 242 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (509)
......||.++ +++ ++ .+.++.++. .+.......+..
T Consensus 193 ~~~~~~~~~~~------~~~-------------------------------~~----~~~~~~~~~--~~~~~~~~~l~~ 229 (392)
T PRK12382 193 AFNGTVRKVPA------HAG-------------------------------ER----PSLWSVVGL--IWKPGLGLALQG 229 (392)
T ss_pred HHHHhccCCCC------Ccc-------------------------------cC----chHHHHHHH--HHHhHHHHHHHH
Confidence 11122222210 000 00 011111111 011111111111
Q ss_pred HHHhHhhhccccccccCCchH-HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646 322 FGIGMVYYGMPLGLGSLSFNL-YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
..........+.++++.+.+. .......+++.+++.++.+++.||+|+|+.+..+..+.+++.+++...+ +......
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 307 (392)
T PRK12382 230 VGFAVIGTFVSLYFASKGWAMAGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP--TAWVALA 307 (392)
T ss_pred HHHhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc--cHHHHHH
Confidence 222222222233344444432 2233344566788899999999999999998888777777766555532 2223333
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHh
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
..++.+++.+...+.......|.+|+++|+++.|+.+....+|..++|.+.+. ...++...+.+.+++.+++.++.+
T Consensus 308 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (392)
T PRK12382 308 GAALTGAGCSLIFPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTI 386 (392)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence 33344455555566667778889999999999999999999999999998883 233455566666666665555443
No 56
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.97 E-value=3.4e-28 Score=238.39 Aligned_cols=343 Identities=13% Similarity=0.111 Sum_probs=226.0
Q ss_pred CCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040646 89 LQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR 168 (509)
Q Consensus 89 ~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r 168 (509)
.|.+|.+.++++. +..+.++..+++.+++.++++++|+++|| +|||++++.+.++++++++++++++|++.++++|
T Consensus 36 ~p~l~~i~~~~~~---~~~~~~~~~s~~~~~~~~~~~~~G~l~dr-~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r 111 (413)
T PRK15403 36 QPGIINVVRDFNA---DVSLAPASVSLYLAGGMALQWLLGPLSDR-IGRRPVLITGALIFTLACAATLFTTSMTQFLIAR 111 (413)
T ss_pred ccCHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhHHHHH-cCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3458899999999 44578999999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
+++|++.+...+....++.|++|+++|++++++...+..+|..++|.++ .+.+..|||+.|++.++..++..+..++.+
T Consensus 112 ~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~l 191 (413)
T PRK15403 112 FIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAM 191 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999998877777778899999999999999999999999999999995 566677999999999888777655555667
Q ss_pred cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646 248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV 327 (509)
Q Consensus 248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (509)
||+++. +++.. ..+....++++++++|.++...+...+........
T Consensus 192 p~~~~~---~~~~~-------------------------------~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~ 237 (413)
T PRK15403 192 PETVKR---GAVPF-------------------------------SAKSVLRDFRNVFRNRLFLTGAATLSLSYIPMMSW 237 (413)
T ss_pred CCCccc---cCCCC-------------------------------ChHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 886420 00000 00011234677888888776655555544444444
Q ss_pred hhcccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH---hccchhHHHHH
Q 040646 328 YYGMPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---MGKIWTSVEIG 400 (509)
Q Consensus 328 ~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 400 (509)
....|.++++ .|.+....... ...+.+++..+.+.+.++..+++.......+..++..++.. ...+.......
T Consensus 238 ~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~~~~~~~~~ 317 (413)
T PRK15403 238 VAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWPHVWLWSVL 317 (413)
T ss_pred HHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHH
Confidence 4455666655 46766554433 23455566666666554444433332222222222222211 11222211222
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHHHHHH
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFGLVIG 470 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~~~~~ 470 (509)
...+..++.+...+......-... +..+|++.++.+.....+..+++...+.. ..+....+...+++..
T Consensus 318 ~~~l~~~G~~~~~p~~~~~al~~~-~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 387 (413)
T PRK15403 318 GTSLYAFGIGLIFPTLFRFTLFSN-NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAG 387 (413)
T ss_pred HHHHHHHHHHHHhHHHHHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 233333444445455442222111 12368888888887777766766666632 2334444444444433
No 57
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.97 E-value=2.7e-28 Score=237.51 Aligned_cols=340 Identities=17% Similarity=0.157 Sum_probs=234.0
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFL-SCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~-~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 173 (509)
+++++|. +..+.|++.+.+.++..+.+++.|+++|| +||||.++. +.++..++.++++++++++.+++.|++.|.
T Consensus 24 l~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 99 (375)
T TIGR00899 24 LSEEVRA---RPAMIGLFYTGSAIVGIAVSQLLATRSDY-QGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSS 99 (375)
T ss_pred HHcccCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 6788999 45589999999999999999999999999 999887654 566667778888999999999999999998
Q ss_pred ccchhhhhheeeeEeeccCcccchh--hhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 174 GRATIGTCAIVLSTELVGKKRRGQV--GSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 174 ~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
+.+...|...+++.|+.|+++|++. .+....+.++|.+++|.+ +.+.+..+||+.|++.+++.++..+..++++||+
T Consensus 100 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T TIGR00899 100 FASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSY 179 (375)
T ss_pred hhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 8888888888888898887777654 577888889999999998 5666778999999999888777666666668886
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
|+.. + ++ .+ ..+.++.++++..+......++.+.........
T Consensus 180 ~~~~----~-~~-----------~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T TIGR00899 180 PRGA----P-GA-----------LT----------------------RLEVRGLLASRDTRLLFVACTLMWGCNILYIIN 221 (375)
T ss_pred ccCc----c-cc-----------cC----------------------cchhhhhhcCcchHHHHHHHHHHHHHHHHHHhh
Confidence 5310 0 00 00 001223445555443333333333333333333
Q ss_pred ccccc-ccCCchHHHHHHHH---HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 331 MPLGL-GSLSFNLYLSVTFN---ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 331 ~~~~~-~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
.|.+. ++.|.+......+. ....+++.++.+++.||+|||+.+..+.++..+....+... ++.+......++.+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g 299 (375)
T TIGR00899 222 MPLLIIHELGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAAD--NSLWALLMLQLLNA 299 (375)
T ss_pred hHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 34443 45666655444333 24456677889999999999998877666555444333332 22333333333444
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhc
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
++.+...+....+..|..|++ ++++.++.+....+|..++|.+.+.. ..+....+.+.+++.+++.++..++
T Consensus 300 ~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 373 (375)
T TIGR00899 300 IFIGILAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLI 373 (375)
T ss_pred HHHHHHHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhee
Confidence 445555666777888888865 56999999999999999999998832 2344555666666666665555444
No 58
>PRK10133 L-fucose transporter; Provisional
Probab=99.97 E-value=8.9e-28 Score=236.55 Aligned_cols=347 Identities=11% Similarity=0.077 Sum_probs=242.6
Q ss_pred ChHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccc
Q 040646 31 SSAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKG 110 (509)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 110 (509)
++.....+.++.+..+..+++....... .|.+++++|+ +..+.|
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~p~i~~~~~~---s~~~~g 64 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDIL---------------------------------LPQFQQAFTL---TNFQAG 64 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhCC---CHHHHH
Confidence 3445555666667777777777766665 8999999999 455899
Q ss_pred hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646 111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT---IFSTNMWIYSVLRFINGFGRATIGTCAIVLST 187 (509)
Q Consensus 111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 187 (509)
++.+.+.+++.+++++.|+++|| +|||+++..+.++++++++++ .++++++.++++|+++|+|.|...+....++.
T Consensus 65 l~~~~~~~g~~i~~~~~g~l~dr-~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~ 143 (438)
T PRK10133 65 LIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVT 143 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999 999999999999999999886 46789999999999999999999999999999
Q ss_pred eeccCcccchhhhhhHHHHHHHHHHHHHHH-HHh-cC-------------------------CcchHHHHHHH-hhHHHH
Q 040646 188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN-RG-------------------------SSWRRIYLYTS-IPTILY 239 (509)
Q Consensus 188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~-~~-------------------------~~wr~~f~~~~-~~~~~~ 239 (509)
|+.++++|.+.+++.+..+.+|..+++.++ .+. .. .+||++|+... +..++.
T Consensus 144 ~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~ 223 (438)
T PRK10133 144 VLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVA 223 (438)
T ss_pred HhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 987777777789999999999999999884 222 00 24666665433 333332
Q ss_pred HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH
Q 040646 240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV 319 (509)
Q Consensus 240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (509)
.+......||.|. ++.+ +++..+...+.++++++|.++...+..++
T Consensus 224 ~~~~~~~~p~~~~-----~~~~-----------------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~~ 269 (438)
T PRK10133 224 LLIMLTKFPALQS-----DNHS-----------------------------DAKQGSFSASLSRLARIRHWRWAVLAQFC 269 (438)
T ss_pred HHHHHhcCCCCCc-----cccc-----------------------------cccccchhhhHHHHHhCchHHHHHHHHHH
Confidence 2222333443211 0000 00000111235678888876654444433
Q ss_pred HHHHHhHhhhccc-cccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646 320 TGFGIGMVYYGMP-LGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW 394 (509)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
........+.+.+ +..+ ..|.++.... ....++.++|+++++++.||+++|+++..+..+..+.+.+..+.+.
T Consensus 270 ~~~~~~~~~~~~~~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~-- 347 (438)
T PRK10133 270 YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGG-- 347 (438)
T ss_pred HHHHHHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCC--
Confidence 3333332222333 3333 4677765544 5556888899999999999999999988887776665555444332
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.. ......+.+++.+..+|...+...+..|++ .+++.++..+ ..+|+.++|.+.+.
T Consensus 348 ~~-~~~~~~l~glg~~~i~P~~~s~a~~~~~~~-~~~as~l~~~-~~~g~~~~~~i~G~ 403 (438)
T PRK10133 348 HV-GLIALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIVM-TIIGGGIVTPVMGF 403 (438)
T ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHcccchh-hccchhHHhH-HhccchHHHHHHHH
Confidence 22 233345566777888899999999998764 5677777753 45677788877773
No 59
>PRK11043 putative transporter; Provisional
Probab=99.97 E-value=1e-27 Score=235.29 Aligned_cols=318 Identities=16% Similarity=0.142 Sum_probs=228.9
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+++++|+ +..+.+++.+++.+++.++++++|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus 29 ~~~i~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 104 (401)
T PRK11043 29 FKAIQADLQT---SASAVSASLSLFLAGFALGQLLWGPLSDR-YGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQ 104 (401)
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHhh-cCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6788999999 45589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|+++++++++..+.......+|..++|.+ +++.+..+||+.|++.++..++..+.. ++++|+
T Consensus 105 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~ 183 (401)
T PRK11043 105 AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPT-LRLKPS 183 (401)
T ss_pred HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHH-HHcCCC
Confidence 999888888888899999999999999999888889999999998 577777899999999888877755443 344443
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
++ +++++ ++..+++++++++..+...+...............
T Consensus 184 ~~-----~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (401)
T PRK11043 184 KK-----ARKQS---------------------------------QDALTFKQLLKSKTYLGNVLIFAACSAAFFAWLTG 225 (401)
T ss_pred CC-----ccccc---------------------------------hHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 21 00000 01124566777776554433333322222222334
Q ss_pred cccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH---HhccchhHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV---VMGKIWTSVEIGLELV 404 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 404 (509)
.|.+.++.|.+....... ..++.++|.++.+++.||+++|+.........+++.+.+. ....+..........+
T Consensus 226 ~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (401)
T PRK11043 226 SPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPLLIPFCV 305 (401)
T ss_pred hHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 566666677776554432 3466778888899999999998876555444444333222 2112222222222333
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.+++.+..++.......+..| ++++++.|+.+.....++..++.+.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~~~~~~~~~~g~ 353 (401)
T PRK11043 306 MAAANGAIYPIVVAQALRPFP-QATGKAAALQNTLQLGLCFLASLLVSA 353 (401)
T ss_pred HHHHHHHHHHHHHHHHhhhCc-ccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666766666667776 569999999999888888888887773
No 60
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=99.97 E-value=1.2e-27 Score=234.27 Aligned_cols=323 Identities=14% Similarity=0.137 Sum_probs=227.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+++|+ +..+.+++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|++.
T Consensus 31 ~~~i~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 106 (394)
T PRK11652 31 IADMARDLNV---REGAVQAVMAAYLLTYGLSQLFYGPLSDR-VGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQ 106 (394)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhhhhHHHh-cCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 7889999999 45589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+....+..|.+++++|+++.++...+..+|..++|.+ +.+.+..+||+.|++.++..++..+...+++||+
T Consensus 107 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 186 (394)
T PRK11652 107 GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPET 186 (394)
T ss_pred HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999988888888888999999999999999999999999999998 4666778999999998877776555555667776
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
++. .+.++ +....+++.+++|.++......+............
T Consensus 187 ~~~----~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (394)
T PRK11652 187 RPA----DARRT---------------------------------RVLASYRTLLSNRRFNCYLLMLIGTLAGIAVFEAC 229 (394)
T ss_pred Ccc----ccchh---------------------------------HHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHh
Confidence 421 00000 01123566777776554444433333333332333
Q ss_pred ccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHH
Q 040646 331 MPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSG-VCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 331 ~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
.+.+.++ .|.+......+ ..++.+++.++.+++.||.+++........... +.............+.......+.
T Consensus 230 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (394)
T PRK11652 230 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPGWFGVMNVWTLLVPAALF 309 (394)
T ss_pred ChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3444443 66665544332 335556667777777777763332222221111 111111111112223333333444
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ 456 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~ 456 (509)
+++.+...+....+..|..| ++++++.++.+....+|..+++.+.+....
T Consensus 310 ~~g~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~ 359 (394)
T PRK11652 310 FFGAGMLFPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQ 359 (394)
T ss_pred HHHHHHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 45556667778888888887 568999999999999999999999885443
No 61
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.96 E-value=1.1e-27 Score=234.57 Aligned_cols=350 Identities=11% Similarity=0.050 Sum_probs=230.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---H-HhHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---F-STNMWIYSVL 167 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~-~~~~~~l~~~ 167 (509)
+|.+.+|+|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++..+.++.+++++++. + .++++.+++.
T Consensus 36 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~g~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 111 (402)
T TIGR00897 36 LSPFLKALGL---SPQQSASAFTLYGIAAAISAWISGVVAEI-IGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLF 111 (402)
T ss_pred HHHHHHHhCC---CHHHhHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHH
Confidence 4556678898 44589999999999999999999999999 9999999999999998877653 3 3578899999
Q ss_pred HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHH-HHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646 168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGF-LSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF 245 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 245 (509)
|++.|++.+...+.....+.+++|+++|++++|+.+.+.++|. +++|++ +++.+..||+..++......++..++..+
T Consensus 112 ~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 191 (402)
T TIGR00897 112 YGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALF 191 (402)
T ss_pred HHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999888888888888999999999999999999999996 578888 46777788766555444333332333334
Q ss_pred eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh
Q 040646 246 LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG 325 (509)
Q Consensus 246 ~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 325 (509)
+.+|.++ +++.++ + .+.++....++.++++|..+......++......
T Consensus 192 ~~~~~~~----~~~~~~------------~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (402)
T TIGR00897 192 SNKDIFT----PQHMQT------------R----------------EKFSELGKAATILFTNPNVLLGGMVRIINTIGLF 239 (402)
T ss_pred ccCCCCC----cccccC------------C----------------cchhhHHHHHHHHHcChhHHHHHHHHHHHHHHHH
Confidence 4444321 000000 0 0000111235667888876655444444434433
Q ss_pred HhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhc---cchhHHH
Q 040646 326 MVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLL-GFTIMSGVCSVLCVVMG---KIWTSVE 398 (509)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~ 398 (509)
......|.+.++.|.+..... ....++.+++.++.|+++||++||+.+. .+.+...++...+...+ .+..+..
T Consensus 240 ~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~ 319 (402)
T TIGR00897 240 GFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA 319 (402)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH
Confidence 344455777777787765443 3345778899999999999999888764 23333333322222211 1222222
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHH
Q 040646 399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
....++.+++.....+ ......|..| ++|+++.|+.+....+|+.++|.+.+. ...+....+.+.+++.+++.+..
T Consensus 320 ~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 320 LIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 2223333333333323 3345566555 589999999999999999999999883 23344556666666666655554
Q ss_pred hhc
Q 040646 477 IGL 479 (509)
Q Consensus 477 ~~~ 479 (509)
.++
T Consensus 398 ~~~ 400 (402)
T TIGR00897 398 AFI 400 (402)
T ss_pred HHh
Confidence 443
No 62
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.96 E-value=7.1e-28 Score=237.35 Aligned_cols=346 Identities=16% Similarity=0.099 Sum_probs=238.8
Q ss_pred Ccceeeeeccccccc--cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASS--LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~--~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 169 (509)
+|.+.+|+|++..+. ...|++.+++.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+
T Consensus 37 l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (408)
T PRK09874 37 LPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADR-KGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRA 115 (408)
T ss_pred HHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 678888888864321 235889999999999999999999999 99999999999999999999999999999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeec
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVR 248 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 248 (509)
+.|++.+ ..+....++.|++|+++|+++.++...+..+|..++|.+ +.+.+..+||+.|++.++..++..+...+++|
T Consensus 116 ~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (408)
T PRK09874 116 LLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIR 194 (408)
T ss_pred HHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999855 567777888999999999999999999999999999998 56667789999999988887776655556666
Q ss_pred CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH-HHHHHHHhHh
Q 040646 249 ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI-MVTGFGIGMV 327 (509)
Q Consensus 249 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~ 327 (509)
|+++. .++++..+ ..+..+.++++..+...... ..........
T Consensus 195 ~~~~~----~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (408)
T PRK09874 195 ENFQP----VSKKEMLH--------------------------------MREVVTSLKNPKLVLSLFVTTLIIQVATGSI 238 (408)
T ss_pred cCccc----ccchhhhH--------------------------------HHHHHHhCcCCchHHHHHHHHHHHHHHHHHH
Confidence 65321 00000000 00122234444433322221 1222221111
Q ss_pred hhccccccccCCchH-------HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646 328 YYGMPLGLGSLSFNL-------YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
....+.+..+.+.+. .......+++.+++.+..+++.||++||+.+..+..+..++.+...... ..+....
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 316 (408)
T PRK09874 239 APILTLYVRELAGNVSNIAFISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ--TPLQLGI 316 (408)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc--cHHHHHH
Confidence 112233323221111 1122233466677888899999999999998888777666655544432 2233333
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
..++.+++.+...+...+...+..|++.+++.+++.+....+|..++|.+.+.. ..++...+.+.+++.+++.++.+
T Consensus 317 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 317 LRFLLGAADGALLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred HHHHHHhhhHhhHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 334444555566677777778888999999999999999999999999998833 23455666767766666655543
No 63
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.96 E-value=2.7e-27 Score=231.62 Aligned_cols=318 Identities=18% Similarity=0.174 Sum_probs=222.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+++|. ++.+.++..+.+.++..+++++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++
T Consensus 26 lp~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr-~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~ 101 (392)
T PRK10473 26 LPRIAADLNA---SEAQLHIAFSVYLAGMAAAMLFAGKIADR-SGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQ 101 (392)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHhHHHHH-hCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 6899999999 45589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|+++.++.+....+|..++|.++ .+.+..+||+.|++.++..++..++....+||+
T Consensus 102 g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 181 (392)
T PRK10473 102 GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKET 181 (392)
T ss_pred HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999985 555678999999998888777666666667775
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
++. +.++ +.......++.++++.++.......+...........
T Consensus 182 ~~~-----~~~~-------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (392)
T PRK10473 182 RPA-----RAPA-------------------------------ASSKPRENSESLLNRFFLSRLVITTLSVTVILTFVNT 225 (392)
T ss_pred CCc-----ccCC-------------------------------ccchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 320 0000 0000112345566666554444333332222222222
Q ss_pred cccc-cccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 331 MPLG-LGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 331 ~~~~-~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
.|.+ .++.|.+.... ....+++.+++.++.+++.||+|||+.+..+..+..++.+.+....... .......+..
T Consensus 226 ~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 303 (392)
T PRK10473 226 SPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPSHA--VSLFGITLIC 303 (392)
T ss_pred CHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 3333 34556665443 3345577788999999999999999998888877777666655533222 1111122222
Q ss_pred HHHHHHhHHHHhhcccccchhhh-hhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 407 FSACTAFSLLLIYTLELFPTCVR-NSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r-~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.+.+..++. ....+..|.+.| +.+.++......+|..+++.+.+.
T Consensus 304 ~g~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~l~~~ 349 (392)
T PRK10473 304 AGFSVGFGV--AMSQALGPFSLRAGVASSTLGIAQVCGSSLWIWLAAV 349 (392)
T ss_pred HHHHHHhHH--HHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 222334443333 455555555556777777777763
No 64
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.96 E-value=1.4e-27 Score=232.58 Aligned_cols=342 Identities=11% Similarity=0.041 Sum_probs=228.1
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING 172 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 172 (509)
+.+.+|++. +..+.+++.+.+.+++.++++++|+++|| +|||++++++.++.+++++++.++++. ++.|+++|
T Consensus 27 ~~~~~~~~~---s~~~~~~~~~~~~l~~~l~~~~~G~laDr-~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G 99 (393)
T PRK11195 27 IALLKELHY---PDWSQPLLQMFFVLAYIVLAPFVGAFADS-FPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVG 99 (393)
T ss_pred HHHHHHcCC---cHHHHHHHHHHHHHHHHHHHhhhhHhhhc-cCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 455678887 44578999999999999999999999999 999999999999999999888887764 78899999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
++.+...|...+++.|++|+++|++++++.+....+|.++||.++ .+.+ ..|+..+.+.+...++. ++..+.+||+|
T Consensus 100 ~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~-~~~~~~~~i~~~~~~~~-~~~~~~l~~~~ 177 (393)
T PRK11195 100 IGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALAD-PHAEAALAVCALIYLLA-ALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 999999999999999999999999999999999999999999995 4444 45777777766554443 34456788865
Q ss_pred HHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcc
Q 040646 252 RWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGM 331 (509)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (509)
+.. ++++++.....++ .....+.++++|..+...+...+.+.......+..
T Consensus 178 ~~~--~~~~~~~~~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (393)
T PRK11195 178 ARR--PGQSWNPIALLRD---------------------------FFHACRVLWRDKLGRFSLAGTTLFWGAGATLRFLV 228 (393)
T ss_pred ccc--cccCCCHHHHHHH---------------------------HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 311 0000000000000 01124567777776555444444444433444444
Q ss_pred ccccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 332 PLGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 332 ~~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+.+.+ .+|.++...+ ...+++.+++.++.+++.||.++++.+..+.. .++....+.. .++.+......++.++
T Consensus 229 ~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~--~~~~~~~~~~~~~~G~ 305 (393)
T PRK11195 229 LAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMAL--QHSLLPAYPLLILIGA 305 (393)
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHH--HhHHHHHHHHHHHHHH
Confidence 44433 3566554443 44457788899999999999888887766643 3333323332 2222322233333444
Q ss_pred HHHHHhHHHHhhcccccchhh-hhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHHHHHHHHHHH
Q 040646 408 SACTAFSLLLIYTLELFPTCV-RNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFGLVIGLCGLF 475 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~-r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 475 (509)
+.+...+...+...+..|++. +|++.++.+....++..++..+.+.. ..+....+.+.+...+++..+
T Consensus 306 ~~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (393)
T PRK11195 306 LGGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLGVPVVAVIVGFGLLVALAM 375 (393)
T ss_pred hhhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 444444556666777766654 79999999999999998888887733 233333444444433333333
No 65
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.9e-27 Score=218.12 Aligned_cols=345 Identities=15% Similarity=0.132 Sum_probs=253.2
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN---MWIYSVLR 168 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~---~~~l~~~r 168 (509)
.+.|.+||++ ++.|.+++.++..+...+..++.|.+.|| ||.|++..+++++..+.++..+++.+ ++++++.+
T Consensus 37 ~~~i~~~~~L---S~~q~~ll~aiPil~GallRl~~g~l~dr-fGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~g 112 (417)
T COG2223 37 GVFIKSDFGL---SEGQKGLLVAIPILVGALLRLPYGFLTDR-FGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIG 112 (417)
T ss_pred HhhhccccCC---CHHHHHHHHHHHHHHhHHHHHHHHhhhcc-cCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHH
Confidence 5778899999 45589999999999999999999999999 99999999999999999999999865 45999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc---chHHHHHHHhhHHHHHHHhh
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS---WRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~---wr~~f~~~~~~~~~~~~~~~ 244 (509)
++.|++ |..+.+...++++|+||+++|.++|++. ..++|..+...++ .+....+ ||....+..++.++..+..+
T Consensus 113 ll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 113 LLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred HHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 6689999999999999999999999999 8888877766663 4445556 99999888888888777888
Q ss_pred eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646 245 FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI 324 (509)
Q Consensus 245 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (509)
+...|.|......++. ...+++.+++++..|...+..+..+-+.
T Consensus 191 ~~~~d~p~~r~~~~~~------------------------------------~~~~~~~v~~~~~~W~lsllY~~tFG~F 234 (417)
T COG2223 191 LGMNDVPEHRASVKPQ------------------------------------LPAQLKAVFSNKDTWLLSLLYFATFGGF 234 (417)
T ss_pred HHhCCChhhhcccccc------------------------------------chhHHHHHhcCcchHHHHHHHHHHHHHH
Confidence 8888776421000000 0024667787887776666655544433
Q ss_pred hHhhhcccc-ccccCCchHHHHHHHH---HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc-----chh
Q 040646 325 GMVYYGMPL-GLGSLSFNLYLSVTFN---ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK-----IWT 395 (509)
Q Consensus 325 ~~~~~~~~~-~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 395 (509)
......+|. +..+++.+...+.... .+.+.+.+.++|+++||+|.++.+......++++......... ...
T Consensus 235 vgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~ 314 (417)
T COG2223 235 VGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSF 314 (417)
T ss_pred HHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcch
Confidence 333333444 4455777765554433 3555667788999999999999988888888888777766431 122
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc---cchhHHHHHHHHHHHH
Q 040646 396 SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ---NNFLSYGIFGLVIGLC 472 (509)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~---~~~~~~~~~~~~~~~~ 472 (509)
......++..+...+......+.+++..+|. +.|.+.|+....+.+|++.-|...+.... .....+.++..+.+++
T Consensus 315 ~~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~-~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a 393 (417)
T COG2223 315 VVFVAVFLALFVFAGLGNGSVFKMIPVIFPK-ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVA 393 (417)
T ss_pred HHHHHHHHHHHHHhccCcchheeechHHHHh-hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333333334444555556677778888876 56889999999999999999998883322 2344556666666666
Q ss_pred HHHHhhc
Q 040646 473 GLFVIGL 479 (509)
Q Consensus 473 ~~~~~~~ 479 (509)
.+..+..
T Consensus 394 ~v~~~~~ 400 (417)
T COG2223 394 LVLTWAL 400 (417)
T ss_pred HHHHHHH
Confidence 5554443
No 66
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.96 E-value=1.5e-27 Score=233.96 Aligned_cols=301 Identities=20% Similarity=0.244 Sum_probs=205.0
Q ss_pred HHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHH--------HHHHHHHHHhhccchhhhhheeeeEe
Q 040646 117 FMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMW--------IYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 117 ~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
+++..+++++.|+++|| +|||+++..+.++.+++.++++++++++ .+++.|+++|++.+...+....++.|
T Consensus 45 ~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~ 123 (394)
T TIGR00883 45 FLARPLGAIVFGHFGDR-IGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE 123 (394)
T ss_pred HHHhhhHHHHhhhhhhh-hhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh
Confidence 34445789999999999 9999999999999999999999998875 58899999999999999999999999
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCC
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGR 259 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~ 259 (509)
++|+++|++..++...+..+|.++++.++... ...+||+.|++.+++.++. +.....+||+|++...++
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 201 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIG-LYLRRNLEETPVFEKAQE- 201 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHH-HHHHHhcCCChhHHHHHh-
Confidence 99999999999999999999999998874322 3578999998877766553 344455677653211000
Q ss_pred HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchH--HHHHHHHHHHHHHHHhHhhhcccccc-c
Q 040646 260 KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW--ALRRLSAIMVTGFGIGMVYYGMPLGL-G 336 (509)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 336 (509)
++ ++...+.++.++++. ++......+.............|.+. +
T Consensus 202 --------------~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (394)
T TIGR00883 202 --------------KH-------------------KKKRGPIRETLTKHRKPFLLGLGLVIATTTTFYLITTYLPTYLTQ 248 (394)
T ss_pred --------------cc-------------------ccccCCHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000113455555543 22222222222233333333345554 4
Q ss_pred cCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHH-HHHH-HhccchhHHHHHHHHHHHHHHHH
Q 040646 337 SLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCS-VLCV-VMGKIWTSVEIGLELVAFFSACT 411 (509)
Q Consensus 337 ~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 411 (509)
+.+.+.... .....+..+++.++.+++.||+|||+.+.....+..+.. ..+. ..............++.+++.+.
T Consensus 249 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 328 (394)
T TIGR00883 249 TLGLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLALIGGM 328 (394)
T ss_pred hcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 556554433 344457788888999999999999998775544443332 2222 22222233333333444455556
Q ss_pred HhHHHHhhcccccchhhhhhHHHHHH-HHHhHhhHHHHHHHHh
Q 040646 412 AFSLLLIYTLELFPTCVRNSAISMVR-QALVFGGVFSPVLVAA 453 (509)
Q Consensus 412 ~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~~~ 453 (509)
..+...++..|.+|++.|+++.++.+ ....+|..++|.+.+.
T Consensus 329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 66778899999999999999999854 4456788888888873
No 67
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.96 E-value=4.7e-27 Score=229.51 Aligned_cols=314 Identities=11% Similarity=0.105 Sum_probs=223.3
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 173 (509)
.+++++|+ +..+.|++.+.+.++..+.+++.|+++|| +|||+++..+.++.+++.+++.++++++.+++.|+++|+
T Consensus 36 ~~~~~~g~---s~~~~gl~~~~~~l~~~~~~~~~G~l~dr-~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 111 (400)
T PRK11646 36 RFVDQLGW---AAVMVGIALGLRQFIQQGLGIFGGAIADR-FGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGL 111 (400)
T ss_pred HHHHHhCC---cHHHHHHHHHHHHHHHHHHHhhhhHHHHH-hCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45678888 55689999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchH
Q 040646 174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPR 252 (509)
Q Consensus 174 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 252 (509)
+.+...+...+++.|++|+++|++++++......+|..++|.++ .+. +.+||+.|++.++..++..+...+++||.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~ 190 (400)
T PRK11646 112 GGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL 190 (400)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 99888898999999999999999999999999999999999994 555 7899999999887776655444445554210
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccc
Q 040646 253 WLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMP 332 (509)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
.+.+ ++...+++++++++.++....................|
T Consensus 191 -----~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 232 (400)
T PRK11646 191 -----STVR---------------------------------TPVREGMTRVLRDKRFVTYVLTLTGYYMLAVQVMLMLP 232 (400)
T ss_pred -----cccc---------------------------------hhhHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0000 00012356677777654433332222222222233457
Q ss_pred cccccCCchHHHHHHHH---HhhhhhHHHHHHHHh-hhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 040646 333 LGLGSLSFNLYLSVTFN---ALSELPASLITFFLI-GKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFS 408 (509)
Q Consensus 333 ~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~-dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (509)
.+.++.+.++.....+. ++....+....+++. ||++.++.+..+..+.+++..++...++ .........+.+.+
T Consensus 233 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~l~~~g 310 (400)
T PRK11646 233 IMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVSN--LQQLFTLICLFYIG 310 (400)
T ss_pred hhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHH
Confidence 77666555544433332 233333333334444 5566666666666666666555544322 22222222333344
Q ss_pred HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.....+...++..+..|+++|++++|+.+....+|..++|.+.+
T Consensus 311 ~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G 354 (400)
T PRK11646 311 SIIAEPARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGG 354 (400)
T ss_pred HHHHHccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchH
Confidence 44555677788999999999999999999999999999998887
No 68
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.96 E-value=4.8e-27 Score=226.52 Aligned_cols=320 Identities=23% Similarity=0.338 Sum_probs=250.2
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
.|.+.++++. +..+.+++.+.+.++..+++++.|+++|| +|||+.+..+.++..++.++..+.++++.+++.|++.
T Consensus 22 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~d~-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 97 (352)
T cd06174 22 LPLLAEDLGL---SASQAGLIVSAFSLGYALGSLLAGYLSDR-FGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLL 97 (352)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6777788887 55589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|++.+++...+..+|..+++.+ +.+.+..+||+.+++.+++.++..+.. .+++
T Consensus 98 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-- 174 (352)
T cd06174 98 GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLL-LFLL-- 174 (352)
T ss_pred HcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-HHHH--
Confidence 999999999999999999999999999999999999999999999 566677789999999888777654333 2211
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
|..+......+............
T Consensus 175 ---------------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~ 197 (352)
T cd06174 175 ---------------------------------------------------------RLLLLLALAFFLLSFGYYGLLTY 197 (352)
T ss_pred ---------------------------------------------------------HHHHHHHHHHHHHHhHHHHHHHH
Confidence 11122233333333444444444
Q ss_pred cccccccC-CchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchh-HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646 331 MPLGLGSL-SFNLYL---SVTFNALSELPASLITFFLIGKLKRKS-SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 331 ~~~~~~~~-g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
.+.+.++. +.+... ......++.+++.++.+++.||++||+ .+..+..+..++.+.+..... .+.......+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~ 275 (352)
T cd06174 198 LPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS--LALLLVALLLL 275 (352)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHH
Confidence 44444443 554433 345556888899999999999999999 888888888887777666432 33334444555
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
+++.+...+....+..|..|+++|++..|+.+....+|..++|.+.+.. ..+....+.+.+++.+++.+..+
T Consensus 276 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~ 349 (352)
T cd06174 276 GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL 349 (352)
T ss_pred HHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence 5666677788899999999999999999999999999999999999843 34555666777776666655543
No 69
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=99.96 E-value=1.8e-27 Score=230.96 Aligned_cols=323 Identities=14% Similarity=0.076 Sum_probs=216.8
Q ss_pred Ccc-eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHH
Q 040646 92 HTS-IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRF 169 (509)
Q Consensus 92 ~~~-i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~ 169 (509)
.|. +++++|+ +..+.+++.+.+.+++.+++++.|+++|| +|||+.+.++.++.+++.+++++++ +++.+++.|+
T Consensus 24 ~~~~~~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 99 (366)
T TIGR00886 24 AVQMIKDDLGL---STAQLGNLVAVPVLAGAVLRIILGFLVDK-FGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRL 99 (366)
T ss_pred hhHHHHHHhCC---CHHHhhHhhHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 674 8999999 55589999999999999999999999999 9999999999999999999999999 9999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc----------CCcchHHH-HHHHhhHH
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR----------GSSWRRIY-LYTSIPTI 237 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~----------~~~wr~~f-~~~~~~~~ 237 (509)
++|++.+. .+....++.|++|+++|+++.++.....++|..+++.++ .+.. ..+||+.| +..++...
T Consensus 100 ~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 178 (366)
T TIGR00886 100 FIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILL 178 (366)
T ss_pred HHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHH
Confidence 99999654 566788999999999999999999877777766666553 2221 34899999 44455555
Q ss_pred HHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH
Q 040646 238 LYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI 317 (509)
Q Consensus 238 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (509)
+..++...+.+|+|+. +.++.+ .+.+.... ..+++...+.++.++++..+...+..
T Consensus 179 ~~~~~~~~~~~~~~~~-----~~~~~~---------~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (366)
T TIGR00886 179 LPALLIFFVGADTPPG-----KPATGK---------LSFKGARW----------SVGTGALGDQLKVFRDRHTWILALLY 234 (366)
T ss_pred HHHHHHHHhcccCCcc-----cccchh---------cccccccc----------cccchhHHHHHHHHhccchhhHHHHH
Confidence 5444555666776531 100000 00000000 00001112456677777655544444
Q ss_pred HHHHHHHhHhhhccccccc-cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc
Q 040646 318 MVTGFGIGMVYYGMPLGLG-SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI 393 (509)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
..............+.+.+ ..+.+..... .+..+..+++.++++++.||+|+|+.+..+......+..++.+....
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (366)
T TIGR00886 235 SVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLVS 314 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 4333333333333444443 4566654443 33446778888999999999999887776666555555444443221
Q ss_pred --hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhh
Q 040646 394 --WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGG 444 (509)
Q Consensus 394 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~ 444 (509)
..........+..+..+...+..+.+.++..| ++++++.|+.+....+|+
T Consensus 315 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g~ 366 (366)
T TIGR00886 315 PLSLAVFIVLFVALFFFSGAGNGSTFALVPHIFR-RATGAVSGLVGAIGNLGG 366 (366)
T ss_pred cchHHHHHHHHHHHHHHhccccchhhhcchhhch-hhcccHHHHHHHhccCCC
Confidence 23222233333334444555667778888887 589999999998887763
No 70
>PRK10054 putative transporter; Provisional
Probab=99.96 E-value=1.1e-26 Score=226.38 Aligned_cols=334 Identities=12% Similarity=0.059 Sum_probs=230.3
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING 172 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 172 (509)
+.+++++|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++.++.++.+++.++.+++++++.+++.|++.|
T Consensus 32 ~~l~~~~g~---s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr-~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 107 (395)
T PRK10054 32 IYLSRQYSL---SVDLIGYAMTIALTIGVVFSLGFGILADK-FDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALIN 107 (395)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456678999 55589999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchH
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPR 252 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~ 252 (509)
.+.+...+...++..|..|+++|++++++.....++|.+++|.++..+.+.+||..|++.++..++..+...+++||+++
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~ 187 (395)
T PRK10054 108 CAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEK 187 (395)
T ss_pred HHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 88888888889999999999999999999999999999999999544335789999998887777654444454555421
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccc
Q 040646 253 WLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMP 332 (509)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (509)
+++.++ . +..+.++.+++|.++......++..+.........+
T Consensus 188 ----~~~~~~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 230 (395)
T PRK10054 188 ----AIATET-G--------------------------------SVWSPSVLLQDKALLWFTCSGFLASFVSGAFASCIS 230 (395)
T ss_pred ----ccccch-h--------------------------------hhhhhhhhccCceehHHHHHHHHHHHHHHHhhhhHH
Confidence 000000 0 001134566777665555544443333222211222
Q ss_pred ccc---ccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 333 LGL---GSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 333 ~~~---~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
.+. .+.+.+......+ .++.........+++.||.++|+.+..+..+..++...+.... ++.+.......+.+
T Consensus 231 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 309 (395)
T PRK10054 231 QYVMVVADSDFAEKVVAVVLPVNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-NSLLLWGMSAAVFT 309 (395)
T ss_pred HHHHHhcccchHHHHHHHHHHhhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-hHHHHHHHHHHHHH
Confidence 221 3334443333222 2244445567788999999999998888777777665554422 22222233334444
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHH
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVI 469 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~ 469 (509)
++.....+.....+.+..|++.++++.+..+ ...+|..++|.+.+.. ..+....+.+.+++.
T Consensus 310 ~g~~~~~p~~~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~ 373 (395)
T PRK10054 310 VGEIIYAPGEYMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAI 373 (395)
T ss_pred HHHHHHHhhHHHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHH
Confidence 5555555667778889999999999988654 5668899999988832 223333444444433
No 71
>PRK11010 ampG muropeptide transporter; Validated
Probab=99.96 E-value=2e-26 Score=230.13 Aligned_cols=350 Identities=13% Similarity=0.120 Sum_probs=232.1
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchHH-HHHHHHHHHHHHHHHHHH---hHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKNM-LFLSCLMMSVSCLLTIFS---TNMW 162 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~~ 162 (509)
+|...++.|.+ ..++|.. +.....+ ++.+++|+++|| + ||||. +..+.+..+++..++++. ++++
T Consensus 35 l~~~l~~~g~~---~~~ig~~-~~~~~~~-~~~~l~gpl~Dr-~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~ 108 (491)
T PRK11010 35 LQAWMTVENID---LKTIGFF-SLVGQAY-VFKFLWSPLMDR-YTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLR 108 (491)
T ss_pred HHHHHHhCCCC---HHHHHHH-HHHHHHH-HHHHHHHHHHHc-ccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHH
Confidence 56777777773 3356665 3344444 688999999999 9 99885 667777777777777775 4788
Q ss_pred HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc-CCcchHHHHHHHhhHHHHH
Q 040646 163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR-GSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~-~~~wr~~f~~~~~~~~~~~ 240 (509)
.+.+.+++.|++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ ++.+ ..|||..|++.++..++..
T Consensus 109 ~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~ 188 (491)
T PRK11010 109 WLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCI 188 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998884 5656 4699999999888777654
Q ss_pred HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646 241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320 (509)
Q Consensus 241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (509)
+. .+++||+++.. +++++ .+++...+++++++++..+......++.
T Consensus 189 l~-~~~~~e~~~~~---~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~ll~~~l~ 234 (491)
T PRK11010 189 IA-TLLAPEPTDTI---PVPKT------------------------------LEQAVVAPLRDFFGRNNAWLILLLIVLY 234 (491)
T ss_pred HH-HHhcCCCcccc---ccccc------------------------------hhhhHHHHHHHHHcCcCHHHHHHHHHHH
Confidence 33 34578764210 00000 0000112466777766655444444333
Q ss_pred HHHHhHhh-hccccccccCCchHHHHHHHH----HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH--hccc
Q 040646 321 GFGIGMVY-YGMPLGLGSLSFNLYLSVTFN----ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV--MGKI 393 (509)
Q Consensus 321 ~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~--~~~~ 393 (509)
.......+ +..+++.+..|.+......+. .++.++|.+++|+++||+|+|+.+.++.++.++..+.+.. ...+
T Consensus 235 ~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~ 314 (491)
T PRK11010 235 KLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK 314 (491)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33333322 334444556787766554432 3577899999999999999988877665554444333221 1112
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHH
Q 040646 394 WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGL 471 (509)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~ 471 (509)
+........++..+..+...+..+++..+..|++.+++..++.+....+|..+++.+.+. ...++...|.+.+++.++
T Consensus 315 ~~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~ 394 (491)
T PRK11010 315 NLYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVP 394 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 222222222222233334445567788888888888999999999889998877777762 223444556666666666
Q ss_pred HHHHHhhccC
Q 040646 472 CGLFVIGLPE 481 (509)
Q Consensus 472 ~~~~~~~~~~ 481 (509)
+.+.....++
T Consensus 395 ~l~~~~~~~~ 404 (491)
T PRK11010 395 GLLLLLVCRQ 404 (491)
T ss_pred HHHHHHHHHh
Confidence 6555555544
No 72
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.95 E-value=6.6e-26 Score=220.54 Aligned_cols=337 Identities=11% Similarity=-0.006 Sum_probs=238.6
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHH----HHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNML----FLSCLMMSVSCLLTIFSTNMWIYSVL 167 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l----~~~~~~~~i~~~~~~~~~~~~~l~~~ 167 (509)
+|.+.+|+|+ +..+.|++.+++.+...++++++|+++|| +|||... ..+..+..+ ..+..+++++.+++.
T Consensus 27 l~~~l~~~g~---s~~~ig~~~s~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~ 100 (382)
T TIGR00902 27 FPAWLKGIGL---GEEMIGLLIGAALIARFAGGLFFAPLIKD-ANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIA 100 (382)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHH
Confidence 6788899999 55689999999999999999999999999 9985433 222222222 244567899999999
Q ss_pred HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhee
Q 040646 168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
|+++|.+.+...|...++..++ +++|++..+....+.++|.+++|++ +.+.+..|||..|++.++...+ .+....
T Consensus 101 ~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~-~~~~~~- 176 (382)
T TIGR00902 101 IGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAF-MLIGFL- 176 (382)
T ss_pred HHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH-HHHHHH-
Confidence 9999999888888888877654 4788999999999999999999998 6788888999999887655333 223222
Q ss_pred ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646 247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM 326 (509)
Q Consensus 247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (509)
++|+++ +++.++ +++.+...+.++++|+|.++...+..++.......
T Consensus 177 ~~~~~~----~~~~~~-----------------------------~~~~~~~~~~~~~l~~~~~~~~l~~~~l~~~~~~~ 223 (382)
T TIGR00902 177 IKPTIP----PKDAIP-----------------------------EDESQGDSAFIALLKNPMNLRFLAAVCLIQGAHAA 223 (382)
T ss_pred cCCCCC----CCcccc-----------------------------ccccccchhHHHHHcChHHHHHHHHHHHHHHHHHH
Confidence 333211 000000 00001122467888998877776666666665555
Q ss_pred hhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646 327 VYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL 403 (509)
Q Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
.+...+.+.++.|.+....+.+ ..+..+++.++.+++.||+|+|+.+.++.+...+....+.+ .++.+..+...+
T Consensus 224 ~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~q~ 301 (382)
T TIGR00902 224 YYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA--IEAFPLIFLLQI 301 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh--HhhHHHHHHHHH
Confidence 5555566667788876555443 34667778888999999999999999998888888777665 333444445556
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHH-HHhHhhHHHHHHHHhhccc-chhHHHHHHHHHHHHHH
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQ-ALVFGGVFSPVLVAAGRQN-NFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~-~~~~g~~i~p~~~~~~~~~-~~~~~~~~~~~~~~~~~ 474 (509)
+.++..+...+....++.+. |++++++++++.+. ...+|..++|.+.|...+. ....+...+++.+++.+
T Consensus 302 l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 302 LHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFF 373 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 66666677777788888888 99999999999864 4578888888888833222 23446666666554433
No 73
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=99.95 E-value=8.1e-26 Score=220.70 Aligned_cols=316 Identities=13% Similarity=0.067 Sum_probs=226.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF---STNMWIYSVLR 168 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~l~~~r 168 (509)
.|.+++++|+ +..+.|++.+.+++++.+++++.|++.|| +|||+++..+.++++++.+++.. .++++.+++.|
T Consensus 26 ~~~~~~~~~~---s~~~~g~l~s~~~~g~~i~~~~~g~l~~r-~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~ 101 (410)
T TIGR00885 26 VPQFQQAFTL---TAFQAALVQSAFYGGYFIMAIPAAIFMKK-LSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGL 101 (410)
T ss_pred HHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 7899999999 55589999999999999999999999999 99999999999999999988654 35899999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC-------------------------
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG------------------------- 222 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~------------------------- 222 (509)
++.|+|.|...+....++.+..|+++|++.+++.+...++|..++|.++ .+...
T Consensus 102 ~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (410)
T TIGR00885 102 FILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSD 181 (410)
T ss_pred HHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999984 33211
Q ss_pred -CcchHHHHHHHhhHHHHHHHhh-eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhH
Q 040646 223 -SSWRRIYLYTSIPTILYCILVR-FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSA 300 (509)
Q Consensus 223 -~~wr~~f~~~~~~~~~~~~~~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (509)
.+||++|++.+++.++..++.. ...||.++ .++ ++.+...+
T Consensus 182 ~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-------~~~------------------------------~~~~~~~~ 224 (410)
T TIGR00885 182 LASVQTPYMIIGAVVLAVALLIMLTKMPALNH-------SDA------------------------------KQISFSAS 224 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-------ccc------------------------------ccccchhh
Confidence 3599999988887776543332 11332110 000 00000113
Q ss_pred HHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC--CchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHH
Q 040646 301 IKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL--SFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLG 375 (509)
Q Consensus 301 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~ 375 (509)
.++++++|.++...+..++...........++.+.++. +.+... ..........+|+++++++.||+++|+.+.+
T Consensus 225 ~~~~~~~~~~~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i 304 (410)
T TIGR00885 225 LSRLARIRHYREGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMA 304 (410)
T ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 45677777766545444443333322333334433332 222221 2222235667899999999999999999888
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 376 FTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
...+.++..++...... ...... ..+.+++.+..+|..++...+..+++.+..+.++... .+|+.+.|.+.+.
T Consensus 305 ~~~~~~~~~ll~~~~~~--~~~~~~-l~~~glf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~~--~~Gga~~p~l~G~ 377 (410)
T TIGR00885 305 YAIIGMALCLGSIFAGG--HVGLYC-LTLCSAFMSLMFPTIYGIALKGLGQDTKYGAAGLVMA--IIGGGIVPPLQGF 377 (410)
T ss_pred HHHHHHHHHHHHHHcCC--hHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHH--HhccchHHHHHHH
Confidence 87777777666666333 222233 3444466667779999999999987765545555443 3999999999883
No 74
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.95 E-value=2.3e-25 Score=217.62 Aligned_cols=341 Identities=15% Similarity=0.164 Sum_probs=213.2
Q ss_pred cceeeeeccccccccccchhHHHHHH-HHHHHHhhhhhccccCCCchHHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFM-GCLAGGLILATLADSSLGRKNML-FLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~~Grr~~l-~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
+.+.+|+|+ +..+.|++.+...+ ++.++.+++|+ +|| +||||.+ ..+.++.+++..+.+++++++.+++.+.+
T Consensus 40 ~~l~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (393)
T PRK15011 40 IFLTDEVHA---RPAMVGFFFTGSAVIGILVSQFLAGR-SDK-RGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVF 114 (393)
T ss_pred HHHHhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc-ccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 346788999 55589999776544 66666655566 999 9999875 55666667888888899999988766655
Q ss_pred HhhccchhhhhheeeeEeeccCccc--chhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRR--GQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
.|...+...+....++.|+.++++| +...++.+.+.++|.+++|+++ .+.++.|||..|++.++..++..+..++++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~ 194 (393)
T PRK15011 115 LSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFL 194 (393)
T ss_pred HHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhc
Confidence 5555567788888888888776655 3445788889999999999995 666778999999999888877766666778
Q ss_pred cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646 248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV 327 (509)
Q Consensus 248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (509)
||.|+. +.++ .+ +. +. .++ +++..+.........+......
T Consensus 195 ~~~~~~-----~~~~-----------~~------~~-------~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~ 235 (393)
T PRK15011 195 PSMRKE-----LPLA-----------TG------TL-------EA--------PRR--NRRDTLLLFVICTLMWGTNSLY 235 (393)
T ss_pred CccCCC-----Cccc-----------cc------cc-------cc--------ccc--ccccHHHHHHHHHHHHHHHHHH
Confidence 876420 0000 00 00 00 000 0011111222222222222222
Q ss_pred hhcccccc-ccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646 328 YYGMPLGL-GSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL 403 (509)
Q Consensus 328 ~~~~~~~~-~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
....|.+. ++.+.+......+ ..+..+++.++.|+++||++||+.+..+.....+....+.. .++.........
T Consensus 236 ~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 313 (393)
T PRK15011 236 IINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM--AHSPAILLGLQL 313 (393)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHH
Confidence 23345444 4466665544333 33556678899999999999999877665554444333322 222222222223
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHhhcc
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
+..+..+...+....+..|..|+ .++++.++.+....+|..++|.+.+... .+....+.+.+++.+++.+.++..|
T Consensus 314 l~~~~~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (393)
T PRK15011 314 LNAIYIGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIK 391 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333334444556677888886 4899999998888999999998888332 2344455555555555555555554
No 75
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=99.95 E-value=5e-26 Score=219.54 Aligned_cols=316 Identities=14% Similarity=0.064 Sum_probs=222.1
Q ss_pred CCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646 90 QAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169 (509)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 169 (509)
|.+|.+++|+|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+++.++.++..++.+.+ .+++++.+++.|+
T Consensus 21 ~~lp~l~~~~~~---s~~~~g~~~s~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 95 (355)
T TIGR00896 21 PLLPQIRSALGM---SFSVAGLLTALPVLCFAVLAPLAPWLARR-FGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTA 95 (355)
T ss_pred ccHHHHHHHhCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHH
Confidence 568999999999 45589999999999999999999999999 999999999999988888877 7789999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC--cchHHHHHHHhhHHHHHHHhhee
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS--SWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
+.|++.+...+....++.|+++ ++|++++++++.+..+|..+++.+ +.+.+.. +||+.|.+.++..++.. . .+
T Consensus 96 ~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~-~--~~ 171 (355)
T TIGR00896 96 LIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLAL-L--AW 171 (355)
T ss_pred HHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-H--HH
Confidence 9999999888888888889886 689999999999999999999888 4454443 39999887766544322 1 22
Q ss_pred ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646 247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM 326 (509)
Q Consensus 247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (509)
+|+.++ +++ .++ + ....+.++++++|..+...+...+.......
T Consensus 172 ~~~~~~------~~~------------~~~--------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (355)
T TIGR00896 172 IPQVRR------RVA------------ANQ--------------T----TTRLTPVRIWRSPLAWQVTVFFGLQSGLYYS 215 (355)
T ss_pred hhhhcc------ccC------------CCC--------------C----CCCCCCchhhcCHhHHHHHHHHHHHHHHHHH
Confidence 343321 000 000 0 0001234566777655444433333333333
Q ss_pred hhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040646 327 VYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE 402 (509)
Q Consensus 327 ~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
.....|.++++.|.+.... .....++.++++++.+++.||+ +||+.+..+..+.+++.+.+.+....... . ..
T Consensus 216 ~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~ 292 (355)
T TIGR00896 216 LIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPMHGLW--A-WA 292 (355)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhhhHHH--H-HH
Confidence 3344566666677765443 3445578889999999999999 45666666666666666555553332221 1 22
Q ss_pred HHHHHHHHHHhHHHHhhcccc-cchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 403 LVAFFSACTAFSLLLIYTLEL-FPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.+.+++.+..++.......+. .+++.++...++.+....++..++|.+.+.
T Consensus 293 ~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~ 344 (355)
T TIGR00896 293 LVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGV 344 (355)
T ss_pred HHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566655555444 446677888999888889999999988873
No 76
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=99.94 E-value=1.9e-26 Score=227.01 Aligned_cols=379 Identities=16% Similarity=0.161 Sum_probs=268.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLR-FI 170 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r-~l 170 (509)
.+.++++|+-+ ..+.+|+.++....+.+..|+.+.+.|| ||.|++.+.|.++..++.++.++++++|++++.. ++
T Consensus 69 ~~~~~~~f~~s---~~~~~~i~sl~~~~~~~~gpl~s~l~~r-fg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi 144 (509)
T KOG2504|consen 69 FEELMDYFGSS---SSQIAWIGSLLLGVYLLAGPLVSALCNR-FGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVI 144 (509)
T ss_pred HHHHHHHhCCC---ccHHHHHHHHHHHHHHHhccHHHHHHhh-cCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 68999999984 4479999999999999999999999999 9999999999999999999999999999887765 88
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.|+|.|+.+......+..+++ |+|+.+.|+...+.++|.++-|.+ .++.+.+|||+.+++.+.+.+-..+.....-|.
T Consensus 145 ~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~ 223 (509)
T KOG2504|consen 145 GGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPL 223 (509)
T ss_pred hhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999998775 899999999999999998777766 789999999999999988887766555555554
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcC--------Ccccccc------ccCccccccccc--ccchhHH---HHHHhchHH
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSEN--------QRSLIMD------FNNVSFEQETWN--VDLYSAI---KILVEKKWA 310 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~------~~~~~~~~~~~~--~~~~~~~---~~l~~~~~~ 310 (509)
++... .+.++..+...+...... .++.... .+..+..++... ..+.... .++++++.+
T Consensus 224 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~f 300 (509)
T KOG2504|consen 224 SPPKK---PNEEKDLRNSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPKF 300 (509)
T ss_pred CcCCC---chhhhhhccccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCchH
Confidence 43210 000000000000000000 0000000 000000000000 1111112 578888877
Q ss_pred HHHHHHHHHHHHHHhHhhhccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchh--HHHHHHHHHHHHHH
Q 040646 311 LRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKS--SLLGFTIMSGVCSV 385 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~--~~~~~~~~~~~~~~ 385 (509)
+...+...+..++....+..++.+..+.+.+... ...+.++..++++++.|++.|+...++ ...++.+..+++.+
T Consensus 301 l~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~ 380 (509)
T KOG2504|consen 301 LLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARL 380 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHH
Confidence 7666666677777777777777777788877544 455566889999999999999987433 34455555555554
Q ss_pred HHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHH
Q 040646 386 LCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSY 462 (509)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~ 462 (509)
.+.+ .......+...++.++..+.........+.|+.+.++-..+.|+...+..++.+++|.+.+.. ..++...+
T Consensus 381 ~~p~--~~~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f 458 (509)
T KOG2504|consen 381 FLPF--ATTYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAF 458 (509)
T ss_pred HHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeeh
Confidence 4444 333455555566666666666666667899999999999999999999999999999999832 22355567
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 040646 463 GIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~ 480 (509)
...++..+++.++.+..+
T Consensus 459 ~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 459 YFCGLCFLLSAVLLLILR 476 (509)
T ss_pred hhcChHHHHHHHHHHHhH
Confidence 777777777776665555
No 77
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.94 E-value=6.3e-25 Score=215.36 Aligned_cols=350 Identities=13% Similarity=0.017 Sum_probs=224.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCc-hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGR-KNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
.+.+.+++|+ +..|.|++.+++.++..++++++|.++|| +|| |+++.++.++.+++..+..+.++++.+++.|++
T Consensus 26 ~~~l~~~~g~---s~~~iGl~~a~~~~~~~i~~~~~g~l~dr-~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 101 (418)
T TIGR00889 26 GSYMSKTLHF---SGAEIGWVYSSTGIAAILMPILVGIIADK-WLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLA 101 (418)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4566678898 55589999999999999999999999999 965 788888888888888888999999999999999
Q ss_pred Hhhccchhhhhheeee----E----eeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHH
Q 040646 171 NGFGRATIGTCAIVLS----T----ELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCI 241 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i----~----e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~ 241 (509)
.|++.+...+...++. . |......|.+..| .+|.+++|.++ .+.....|+ +|++.++..++..
T Consensus 102 ~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~- 173 (418)
T TIGR00889 102 NSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLG- 173 (418)
T ss_pred HHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHH-
Confidence 9998776666554432 1 2233334445544 36777777774 342222354 3555555555544
Q ss_pred HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646 242 LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG 321 (509)
Q Consensus 242 ~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (509)
+..+++||+|+- ++++++. .++....+.++++|+|.++..++..++..
T Consensus 174 ~~~~~~~e~~~~---~~~~~~~-----------------------------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 221 (418)
T TIGR00889 174 VFALTLPDIPVA---KSTAKMS-----------------------------IKVMLGLDAFILFKNKRMAIFFFFSMLLG 221 (418)
T ss_pred HHHhcCCCCCCC---ccccccC-----------------------------HHHHhhhhHHHHhcCCCeeeHHHHHHHHH
Confidence 345678887520 0000000 00000112455777777655555544444
Q ss_pred HHHhHhhhccccccccCCchH-----------HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh
Q 040646 322 FGIGMVYYGMPLGLGSLSFNL-----------YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM 390 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~ 390 (509)
......+...+.+.++.|.++ .....+..+..+++.+..+++.||+|+|+++..+.++.++...++...
T Consensus 222 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~ 301 (418)
T TIGR00889 222 APLQITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG 301 (418)
T ss_pred hHHHHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc
Confidence 333333333344444444322 233444556778889999999999999999999988887776555553
Q ss_pred ccch--hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHH-HHHhHhhHHHHHHHHhhc--------ccch
Q 040646 391 GKIW--TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVR-QALVFGGVFSPVLVAAGR--------QNNF 459 (509)
Q Consensus 391 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~-~~~~~g~~i~p~~~~~~~--------~~~~ 459 (509)
.... ....+...++.+++.+...+....++.|.+|++.|++++|+.+ ....+|..++|.+.+... .++.
T Consensus 302 ~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~ 381 (418)
T TIGR00889 302 DPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQ 381 (418)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchH
Confidence 2211 1222223334444444555667788999999999999999997 567889999999888321 1234
Q ss_pred hHHHHHHHHHHHHHHH-HhhccCCCCC
Q 040646 460 LSYGIFGLVIGLCGLF-VIGLPETRDT 485 (509)
Q Consensus 460 ~~~~~~~~~~~~~~~~-~~~~~~~~~~ 485 (509)
..|.+.+++.++.+++ .++++|+++.
T Consensus 382 ~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 382 TMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 5566666665555544 3556665443
No 78
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.94 E-value=2.1e-24 Score=214.63 Aligned_cols=324 Identities=14% Similarity=0.080 Sum_probs=226.1
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHhH------H
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFSTN------M 161 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~ 161 (509)
.+.+.+++|+ +..+.|++.++..+..++.+|+.|+++|| |+|| |+.++.+....+++.+++.+.++ .
T Consensus 23 ~~~~~~~~g~---s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 99 (437)
T TIGR00792 23 LFFYTDVLGL---SAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKL 99 (437)
T ss_pred HHHHHHccCC---CHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHH
Confidence 3456677888 55589999999999999999999999998 4787 45677888888888888877653 4
Q ss_pred HHHHHHHHHHhhccchhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHH-HHHh-------cCCcchHHHHHH
Q 040646 162 WIYSVLRFINGFGRATIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAI-AYIN-------RGSSWRRIYLYT 232 (509)
Q Consensus 162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-------~~~~wr~~f~~~ 232 (509)
..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|.++++.+ +.+. +..+||+.+.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~ 179 (437)
T TIGR00792 100 VYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVL 179 (437)
T ss_pred HHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHH
Confidence 67778889999998888888888899987 46899999999988888887666554 2222 246899999999
Q ss_pred HhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHH
Q 040646 233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALR 312 (509)
Q Consensus 233 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (509)
+++.++..+...+.+||+++. +.++ ++++.+....+++++++|.++.
T Consensus 180 ~~l~~~~~~~~~~~~~e~~~~-----~~~~----------------------------~~~~~~~~~~~~~l~~~~~~~~ 226 (437)
T TIGR00792 180 ALIGVVSLIICFFGTKERYSE-----IPKN----------------------------IEKKLSLKQIFKALFKNDQLLI 226 (437)
T ss_pred HHHHHHHHHHHHcCCEecCCC-----CCcc----------------------------cccCCCHHHHHHHHhCCHHHHH
Confidence 988887766666777775310 0000 0000112235677888888766
Q ss_pred HHHHHHHHHHHHhHhhhcccccccc-CCch--HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646 313 RLSAIMVTGFGIGMVYYGMPLGLGS-LSFN--LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV 389 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~ 389 (509)
.....++.+..........+++.+. .+.+ ......+..++.+++.++.+++.||+|+|+.+..+..+.+++.+.+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~ 306 (437)
T TIGR00792 227 LCLAYLFYNLAFNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFF 306 (437)
T ss_pred HHHHHHHHHHHHHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444333333444332 2211 122233445778888999999999999999998888777777666555
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.. ++.+......++.+++.+...+..+++.+|..| ++.+|.+.|+.+....+|..+++.+.+
T Consensus 307 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g 375 (437)
T TIGR00792 307 AG-SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG 375 (437)
T ss_pred cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 222333333444555566666777888888765 456789999999999888888888776
No 79
>TIGR00901 2A0125 AmpG-related permease.
Probab=99.94 E-value=3e-25 Score=214.33 Aligned_cols=312 Identities=15% Similarity=0.149 Sum_probs=219.2
Q ss_pred CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchHH-HHHHHHHHHHHHHHHHHH---hHH
Q 040646 91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKNM-LFLSCLMMSVSCLLTIFS---TNM 161 (509)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~~-l~~~~~~~~i~~~~~~~~---~~~ 161 (509)
..|.+.+|+|+ +..+.|+..+. .+...+ .+++|+++|| + ||||. ++.+.++.++.....++. .+.
T Consensus 10 ~~~~~~~~~g~---s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr-~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l 83 (356)
T TIGR00901 10 TLPYWLRSKNV---SLKTIGFFSLV-GLPYSL-KFLWSPLVDT-VYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDL 83 (356)
T ss_pred HHHHHHHHcCC---CHHHHHHHHHH-HHHHHH-HHHHHHHHhc-ccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhH
Confidence 47899999999 44588888655 455554 8999999999 7 89886 567777777777777776 466
Q ss_pred HHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc--------chHHHHHH
Q 040646 162 WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS--------WRRIYLYT 232 (509)
Q Consensus 162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~--------wr~~f~~~ 232 (509)
+.+....++.+++.+...+...+++.|++|+++|+++.++...+..+|.++++.++ .+....+ ||..|++.
T Consensus 84 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ 163 (356)
T TIGR00901 84 PLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWT 163 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHH
Confidence 77778888889988989999999999999999999999999999999999999884 6666667 99999998
Q ss_pred HhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchH---
Q 040646 233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKW--- 309 (509)
Q Consensus 233 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 309 (509)
++..++..+..++..||+++. +.+.++. +++...+++++++++.
T Consensus 164 ai~~l~~~~~~~~~~~e~~~~---~~~~~~~------------------------------~~~~~~~~~~~~~~~~~~~ 210 (356)
T TIGR00901 164 ALLILPGLLVTLFLAKEPQED---ASVPKPL------------------------------TQAVLKPIREFFQRKNMIQ 210 (356)
T ss_pred HHHHHHHHHHHHHhccCCCcc---cccchhH------------------------------HHHHHHHHHHHHHhcCchH
Confidence 887777554444445664220 0000000 0001124566777664
Q ss_pred HHHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHH----hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHH
Q 040646 310 ALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNA----LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSV 385 (509)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~ 385 (509)
.+......++..+.........+.+.++.|.+......+.. +..+++.++++++.||+|||+.+..+.++.++...
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~ 290 (356)
T TIGR00901 211 ALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNA 290 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444456666667877666543332 45678899999999999999998888777776655
Q ss_pred HHHHhc-c--------chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHh
Q 040646 386 LCVVMG-K--------IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALV 441 (509)
Q Consensus 386 ~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~ 441 (509)
++.+.. . +..+......++..++.+...+...++..|.+|+++|++.+|+.+...+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 291 GFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 544431 1 1223333334444566667778899999999999999999999876653
No 80
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=99.94 E-value=9.2e-25 Score=242.66 Aligned_cols=327 Identities=13% Similarity=0.054 Sum_probs=225.4
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMWIYSVLRFI 170 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~l 170 (509)
.+..+++.+. +....+++.+++.+++.++++++|+++|| +|||++++++.++.+++.++.. .+++++.+++.|++
T Consensus 35 ~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr-~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l 112 (1146)
T PRK08633 35 TLIKAYDGSE-QVILTAIVNALFLLPFLLLSSPAGFLADK-FSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFL 112 (1146)
T ss_pred HHHHHcCccc-HHHHHHHHHHHHHHHHHHHhhhHhhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 3334454432 23457999999999999999999999999 9999999998877666655544 45789999999999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC---------CcchHHHHHHHhhHHHHH
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG---------SSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~---------~~wr~~f~~~~~~~~~~~ 240 (509)
+|++.+...+...+++.|++|+++|++++++...+..+|.+++++++ ++... .+|++.+.+..+...++.
T Consensus 113 ~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (1146)
T PRK08633 113 LGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLG 192 (1146)
T ss_pred HHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999995 44443 235555544444444444
Q ss_pred HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646 241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320 (509)
Q Consensus 241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (509)
++..+.+||+|+....+.+ ++ ...........++.+++++.++..++...+.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~-~~---------------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 244 (1146)
T PRK08633 193 LIFAYRLPKVPAAAPEVFD-KK---------------------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYF 244 (1146)
T ss_pred HHHHhcCcCCCCCCccccc-cc---------------------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4555667877532100000 00 0000011123466677777766555555555
Q ss_pred HHHHhHhhhcccccc-ccCCchHH-HH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchh
Q 040646 321 GFGIGMVYYGMPLGL-GSLSFNLY-LS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWT 395 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~-~~~g~~~~-~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
++........+|.++ +..|.+.. .. ....+++.+++.++.+++.||+++++.+.++.++.+++.+++.+.. +.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 322 (1146)
T PRK08633 245 WFISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--SL 322 (1146)
T ss_pred HHHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--hH
Confidence 444433333344443 44566544 33 3444577788999999999999998888877777776666655533 23
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 396 SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
+..+...++.+++.+...+...+++.+..|++.|++++|+.+++..+|.++++.+.+
T Consensus 323 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~ 379 (1146)
T PRK08633 323 ASVLVLFFLFGFSAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTT 379 (1146)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 333333344445555556677888999999999999999999998888877766655
No 81
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.94 E-value=1.2e-24 Score=211.74 Aligned_cols=335 Identities=12% Similarity=0.003 Sum_probs=223.5
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCch----HHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRK----NMLFLSCLMMSVSCLLTIFSTNMWIYSVL 167 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr----~~l~~~~~~~~i~~~~~~~~~~~~~l~~~ 167 (509)
+|.+.+|+|. +..+.|++.+++.++..++++++|+++|| +||| +.+.+...+. .......++++|.+++.
T Consensus 27 l~~~l~~~g~---s~~~iG~~~~~~~l~~~l~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~ 100 (382)
T PRK11128 27 WSVWLKGQGY---TPETIGLLLGAGLVARFLGSLLIAPRVKD-PSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVA 100 (382)
T ss_pred HHHHHHhcCC---CHHHHHHHHHHHHHHHHhhhHHHHHHHhh-hcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHH
Confidence 6778889999 55689999999999999999999999999 9984 3333222221 22233446889999999
Q ss_pred HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhee
Q 040646 168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
|++.|++.+...+...+++.++ +++|+++.+....+.++|.+++|++ +.+.+++|||..|++.++..++.. +..+.
T Consensus 101 ~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~-~~~~~ 177 (382)
T PRK11128 101 IGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASML-LGQLL 177 (382)
T ss_pred HHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHH-HHHHc
Confidence 9999999888888877777766 4678899999999999999999999 467777899999988776544433 33334
Q ss_pred ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646 247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM 326 (509)
Q Consensus 247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (509)
.||.++ +++.+ ++.++...++++++++|.++......++.......
T Consensus 178 ~~~~~~----~~~~~------------------------------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~ 223 (382)
T PRK11128 178 RPTIMP----QGESR------------------------------QQESAGWPAWKALLKEPTVWRFLLCVSLLQGSHAA 223 (382)
T ss_pred cCCCCC----ccccc------------------------------cccccccchHHHHHcChhHHHHHHHHHHHHHHhHh
Confidence 454311 00000 00000123578889998877666655555554443
Q ss_pred hhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646 327 VYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL 403 (509)
Q Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
.+...+.+.++.|.+......+ ..+..++..++.+++.||+++|+.+..+.+..++..+.+... ++.+..+...+
T Consensus 224 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 301 (382)
T PRK11128 224 YYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGST--TALPWLIVIQI 301 (382)
T ss_pred HHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhh--hhHHHHHHHHH
Confidence 3334455556677765544433 335666777889999999999999888888777766555442 33343344444
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHH-HhHhhHHHHHHHHhhccc-chhHHHHHHHHHHHH
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA-LVFGGVFSPVLVAAGRQN-NFLSYGIFGLVIGLC 472 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~p~~~~~~~~~-~~~~~~~~~~~~~~~ 472 (509)
+.++..+...+....+..+. +++++++.++..+.. ..+|..++|.+.|...+. ....+...+++.+++
T Consensus 302 l~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~ 371 (382)
T PRK11128 302 LHCGTFTVCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 55555555556666777776 555678888887643 466778888888833222 223444444444433
No 82
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=99.94 E-value=2.5e-24 Score=238.19 Aligned_cols=315 Identities=10% Similarity=-0.028 Sum_probs=220.0
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhe
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFL---SCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAI 183 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 183 (509)
...++..+++.++++++++++|+++|| +|||+++.. ..++..+..+.....++++.++++|+++|++.+...|+..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr-~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~ 130 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADK-YDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKY 130 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhh-ccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHH
Confidence 357889999999999999999999999 999997533 2233333333344458999999999999999999999999
Q ss_pred eeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHH
Q 040646 184 VLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEE 262 (509)
Q Consensus 184 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~ 262 (509)
+++.+++++++|++++++.+++.++|.++||++ +++....+|++.|...++..++ +++..+++|+++.- +...+.
T Consensus 131 a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~ 206 (1140)
T PRK06814 131 SILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVL-GWLASLFIPKTGNA---APDLKI 206 (1140)
T ss_pred HhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH-HHHHHhhCCCCCCC---CCCCee
Confidence 999999999999999999999999999999999 5777888999999554444444 44555667765320 000000
Q ss_pred HHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCch
Q 040646 263 AVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFN 341 (509)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~ 341 (509)
.. ...++....++.+.+++.++...+..++.++.........|.++++ +|.+
T Consensus 207 ~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~ 259 (1140)
T PRK06814 207 DR---------------------------NIIRSTITLLKYAKADKRIWLAILGISWFWLVGAVVLSQLPLLAKETLGGD 259 (1140)
T ss_pred cc---------------------------chHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCc
Confidence 00 0000111246777888887776666666655554444445555544 5666
Q ss_pred HHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh------------------ccchhHHHHH
Q 040646 342 LYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM------------------GKIWTSVEIG 400 (509)
Q Consensus 342 ~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~ 400 (509)
.... ....+++.++|.++.+++.++.++++.+..+.++.+++.+.+.+. .....+....
T Consensus 260 ~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (1140)
T PRK06814 260 ENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILI 339 (1140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHH
Confidence 5443 344557888999999999988777666555554444444333321 0122223333
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
..++.+++.+...+...+++.+..|++.+|+++|+.++...+|..+++++.+.
T Consensus 340 ~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~ 392 (1140)
T PRK06814 340 DLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILAL 392 (1140)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566788899999999999999999999999999999988873
No 83
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=99.93 E-value=8.8e-25 Score=206.38 Aligned_cols=344 Identities=13% Similarity=0.038 Sum_probs=216.1
Q ss_pred Ccceeeeeccccccccc-cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLI-KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~-~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
.|.+.+|+|++. .+ .|.+.++++.+|++++++.|.++|| +|.|+++.++.+.+++.+++.+++++++.+.+.|++
T Consensus 49 ~p~L~~elglT~---~qv~G~I~s~F~ysYal~qIp~GlLaDr-lG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~l 124 (511)
T TIGR00806 49 TPYLLTVLNFTE---ETVTNEIIPVLPYSHLAVLVPVFLLTDY-LRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVF 124 (511)
T ss_pred HHHHHHHcCCCH---HHhcchHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999954 47 9999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHH--HhhHHHHHHHhheeec
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYT--SIPTILYCILVRFLVR 248 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~--~~~~~~~~~~~~~~~~ 248 (509)
.|+++|..+ ....++..|+|+++|+++.++..++..+|.+++++++.++..+|||+.+.+. .+.+..++++..+++|
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999 9999999999999999999999999999999999995336678999865443 3344445566678888
Q ss_pred CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCccccccccc----ccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646 249 ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWN----VDLYSAIKILVEKKWALRRLSAIMVTGFGI 324 (509)
Q Consensus 249 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (509)
..++-+.-+++.+.... ... +.+...+.+..+.....+... +.-...+++..+++......+-..+...+.
T Consensus 204 ~~~~sl~f~~~~~~~~~----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlWwa~a~~g~ 278 (511)
T TIGR00806 204 RPKRSLFFNRLEDVRGA----LPC-ELDQMVPGPGGKLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLWWVFNSAGY 278 (511)
T ss_pred CCchhhhhccccccccc----ccc-ccccCCCCCccccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHHHHHHhhHH
Confidence 65553333322111000 000 000000000000000000000 112334555666666544433333333433
Q ss_pred hHhhhccccccccC-----CchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646 325 GMVYYGMPLGLGSL-----SFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI 399 (509)
Q Consensus 325 ~~~~~~~~~~~~~~-----g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
....++...+-+.. ..| ...-.+..+.+.++.+..|++-.++.+.-.+.++.....-+.+++.....++.+...
T Consensus 279 ~qv~~Y~Q~LW~~v~~~~~~yN-G~veA~~tllga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~t~~Iw~~Y 357 (511)
T TIGR00806 279 YLITYYVHTLWGTLDESLNKYN-GAVDAASTLLGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQSHDIWVLY 357 (511)
T ss_pred HHHHHHHHHHHHHcCCCccccC-CHHHHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhcccchHHHH
Confidence 33322221111111 122 112223335555677888888655544333333333222222233332244455555
Q ss_pred HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH
Q 040646 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF 446 (509)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i 446 (509)
...++....+....++...-+++....+.-|..+|+++++..+-..+
T Consensus 358 ~~yvlf~~~y~flitia~~~iA~~L~~~~~aLvFGiNtfvAl~LQti 404 (511)
T TIGR00806 358 VTYVLFRGIYQFLVPIATFQIASSLSKELCALVFGINTFVATALKTI 404 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccceEEEEecHHHHHHHHHHh
Confidence 55555555555555666666666677677788899888776554443
No 84
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=99.93 E-value=9.8e-24 Score=206.86 Aligned_cols=345 Identities=14% Similarity=0.093 Sum_probs=224.3
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchH-HHHHHHHHHHHHHHHHHHH---hHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKN-MLFLSCLMMSVSCLLTIFS---TNMW 162 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~-~l~~~~~~~~i~~~~~~~~---~~~~ 162 (509)
+|..-+|-|+ +..++|++..+... .+..+++|+++|| + |||| ++.++.++.+++..+.++. .+++
T Consensus 22 ~~~~l~~~g~---~~~~ig~~~~~~~~--~~~~~l~g~~~Dr-~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~ 95 (402)
T PRK11902 22 LQAWMTVEGL---DIQTIGFFSLVGQA--YIFKFLWAPLMDR-YTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALW 95 (402)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHH--HHHHHHHHHHHHc-ccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHH
Confidence 6777778899 45589999776665 5889999999999 9 8865 7888888888888887776 3578
Q ss_pred HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC-CcchHHHHHHHhhHHHHH
Q 040646 163 IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG-SSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~-~~wr~~f~~~~~~~~~~~ 240 (509)
.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.++ .+.+. .|||..|++.++..++..
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~ 175 (402)
T PRK11902 96 PLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGA 175 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence 8888888888888999999999999999999999999999999999999998884 55554 599999999888776644
Q ss_pred HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646 241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320 (509)
Q Consensus 241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (509)
+ ..+++||+++. +++.++. +++...++++++++|.++......++.
T Consensus 176 l-~~~~~~e~~~~---~~~~~~~------------------------------~~~~~~~~~~l~~~~~~~~~l~~~~l~ 221 (402)
T PRK11902 176 L-TTLWAPEPEVP---ARPPRSL------------------------------GEAVVGPLRDFFSRRGAWALLLLIVLY 221 (402)
T ss_pred H-HHHhcCCCccc---ccccchh------------------------------HHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 3 34566775431 0000000 000122467788888766555544444
Q ss_pred HHHHhHh-hhccccccccCCchHHHHHHHHH----hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH--hccc
Q 040646 321 GFGIGMV-YYGMPLGLGSLSFNLYLSVTFNA----LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV--MGKI 393 (509)
Q Consensus 321 ~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~--~~~~ 393 (509)
....... .+..+++.++.|.+......+.. ++.+++.++++++.||+++|+.+..+..+..+..+.+.. ...+
T Consensus 222 ~~~~~~~~~~~~~~l~~~~G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~ 301 (402)
T PRK11902 222 KLGDAFAGSLSTTFLIRGAGFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPK 301 (402)
T ss_pred HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3332222 23334455667877665554432 346788999999999999999877666665554433322 1112
Q ss_pred hhHHHHHHH----HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHH
Q 040646 394 WTSVEIGLE----LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGL 467 (509)
Q Consensus 394 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~ 467 (509)
+.+...... +..++...........++.+.+|.+.++. .+....+|..+++.+.+ ....++...+.+.++
T Consensus 302 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~ 377 (402)
T PRK11902 302 HLWTMALAIGIENLCGGMGTAAFVALLMALCNRSFSATQYAL----LSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVV 377 (402)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH
Confidence 222222222 12233344455667778888888776544 33333444443333333 122344555666666
Q ss_pred HHHHHHHHHhhcc
Q 040646 468 VIGLCGLFVIGLP 480 (509)
Q Consensus 468 ~~~~~~~~~~~~~ 480 (509)
+++++.++....+
T Consensus 378 ~~~~~~~~~~~~~ 390 (402)
T PRK11902 378 IALPGLALLWLMR 390 (402)
T ss_pred HHHHHHHHHHHHh
Confidence 6655555444443
No 85
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.93 E-value=3.4e-24 Score=211.48 Aligned_cols=349 Identities=14% Similarity=0.018 Sum_probs=205.7
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHH-HHHHHHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMW-IYSVLRF 169 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~-~l~~~r~ 169 (509)
.+++++|+ +..+.|++.+++.++..+++++.|+++|| +|||++++++..+.+++..... .++... ......+
T Consensus 36 ~l~~~~g~---s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (420)
T PRK09528 36 WLHDINGL---SGTDTGIIFSANSLFALLFQPLYGLISDK-LGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAI 111 (420)
T ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888 55589999999999999999999999999 9999999887666554433221 111111 0111222
Q ss_pred HHhhccchhhhhheeeeEeecc--CcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646 170 INGFGRATIGTCAIVLSTELVG--KKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
+.++..+.........+.++.+ .+++++.++......++|..++|.++..+.+.+|+..|++.++++++..+..+...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~ 191 (420)
T PRK09528 112 VGGIYLGFGFLAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAK 191 (420)
T ss_pred HHHHHhhhhhccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhccc
Confidence 2233223223322223333333 34667788888888999999999985443346899999998888776554544444
Q ss_pred cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646 248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV 327 (509)
Q Consensus 248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (509)
+|.++. .+.. + ++ + +++++......++.+++|.++...+..+.........
T Consensus 192 ~~~~~~------~~~~-~--------~~--~------------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~ 242 (420)
T PRK09528 192 PDAPST------AKVA-N--------AL--G------------ANASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF 242 (420)
T ss_pred ccccch------hhhc-c--------ch--h------------cccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH
Confidence 443320 0000 0 00 0 0000111223556777776544333332222222111
Q ss_pred hhcccccc----ccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646 328 YYGMPLGL----GSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400 (509)
Q Consensus 328 ~~~~~~~~----~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
....|.+. .+.+.+.. ....+..+..+++.++.+++.||+|+|+.+..+.++..+...++.+.. +.+..+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~--~~~~~~~ 320 (420)
T PRK09528 243 DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT--GPLEVSI 320 (420)
T ss_pred HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc--cHHHHHH
Confidence 11122222 22233332 233344566778899999999999999998888887777766665533 2333333
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHH-HHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISM-VRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
...+.+.......+....+..|.+|++.+++..+. .+....+|.+++|.+.+.. ..++...+.+.+++.++..++.+
T Consensus 321 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 321 LKLLHAFEVPFLLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 33333344444445556788899999999888765 5667788999999888832 23455566666666655554443
No 86
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=99.93 E-value=1e-23 Score=209.55 Aligned_cols=374 Identities=12% Similarity=0.007 Sum_probs=228.6
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHh
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWI-YSVLRFING 172 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~-l~~~r~l~G 172 (509)
.+++++|++ ..+.+++.+.+.....+..+++|+++||++||||+++++.+++++++++++++++... ++++|+++|
T Consensus 40 yl~~~lg~~---~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ 116 (489)
T PRK10207 40 FFVKQLGFS---QEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIA 116 (489)
T ss_pred HHHHHcCCC---HHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 445678884 4467899999998888888999999997589999999999999999999999876444 558999999
Q ss_pred hccchhhhhheeeeEeeccCc--ccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 173 FGRATIGTCAIVLSTELVGKK--RRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
+|.|...+...+++.|.+|++ +|+++++++..+.++|.+++|.+ +++.++.|||+.|++.++. ++..++.+...++
T Consensus 117 ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~-~~~~~~~~~~~~~ 195 (489)
T PRK10207 117 VGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG-LIIALLVYFACRG 195 (489)
T ss_pred hccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HHHHHHHHHHcch
Confidence 999999999999999999877 45789999999999999999998 6788889999999986543 3333333333332
Q ss_pred chHHHH--hcCCHHHHHHHHH----------HHHhhcCCccccccc-cCccc------ccccccccchhHHHHHHhchHH
Q 040646 250 SPRWLF--IQGRKEEAVSIIK----------SISTSENQRSLIMDF-NNVSF------EQETWNVDLYSAIKILVEKKWA 310 (509)
Q Consensus 250 sp~~~~--~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~~~~~~~~l~~~~~~ 310 (509)
..+... .+++..+...... ......+........ ..... -.+..+. .+.+|+|.+
T Consensus 196 ~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~------~~~~r~r~~ 269 (489)
T PRK10207 196 MVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL------DKTGRNKMF 269 (489)
T ss_pred hhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC------CHHHHHHHH
Confidence 111000 0000001000000 000000000000000 00000 0000000 134444432
Q ss_pred HHHHHH--HHHHHHHHhHhhhcccccccc------CCc--hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhH-------H
Q 040646 311 LRRLSA--IMVTGFGIGMVYYGMPLGLGS------LSF--NLYLSVTFNALSELPASLITFFLIGKLKRKSS-------L 373 (509)
Q Consensus 311 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~g~--~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~-------~ 373 (509)
....+. ..+.+.......+.++.+.++ .|+ .+.....+..+..++..++.+++.||+++|+. +
T Consensus 270 ~~~~l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~ 349 (489)
T PRK10207 270 VAFVLMLEAVVFYILYAQMPTSLNFFAINNVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKF 349 (489)
T ss_pred HHHHHHHHHHHHHHHHHHcccHHHHHHHHhccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 222211 222333333333333333331 122 23334444445566677778899999998863 5
Q ss_pred HHHHHHHHHHHHHHH-----Hhc---cchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhH
Q 040646 374 LGFTIMSGVCSVLCV-----VMG---KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGV 445 (509)
Q Consensus 374 ~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~ 445 (509)
.++.++.+++++.+. ... ..+.++.+...++.+++.....+....++.+..|++.++.++|+.+....+|+.
T Consensus 350 ~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~ 429 (489)
T PRK10207 350 TLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFL 429 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH
Confidence 566666666654331 111 112344444555666777778888899999999999999999999999999998
Q ss_pred HHHHHHHhhc------------ccchhHHHHHHHHHHHHHHHHh
Q 040646 446 FSPVLVAAGR------------QNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 446 i~p~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
++..+..... ......|...++..++..++++
T Consensus 430 lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~ 473 (489)
T PRK10207 430 LGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMA 473 (489)
T ss_pred HHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8887764221 1123455555655555554443
No 87
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.92 E-value=8e-23 Score=200.20 Aligned_cols=344 Identities=12% Similarity=0.013 Sum_probs=216.9
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HH-----hHHHHHHH
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FS-----TNMWIYSV 166 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~-----~~~~~l~~ 166 (509)
+.+++|+ +..+.|++.+.+.+++.+++++.|+++|| +|||+.++.+....+++..... +. +.+..+++
T Consensus 29 ~~~~~g~---s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (396)
T TIGR00882 29 LHDVNGL---SKTDTGIVFSCISLFSILFQPLFGLISDK-LGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIV 104 (396)
T ss_pred HHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4556888 55589999999999999999999999999 9999999887766655443321 11 22345567
Q ss_pred HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhhee
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
.|++.|++.+...+....+..|.. ++++...+......++|.+++|.++.++.+.+||.+|++.+++.++..++.+..
T Consensus 105 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~ 182 (396)
T TIGR00882 105 GGLYLGFVFSAGAGAIEAYIEKVS--RNSNFEYGKARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFA 182 (396)
T ss_pred HHHHHHHHhccchhhHHHHHHHhh--hhcccccchhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHh
Confidence 788899888888887777665543 334566778888889999999999655556799999999888877765444444
Q ss_pred ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646 247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM 326 (509)
Q Consensus 247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (509)
.||+|+. ++..+ .. + .++++++..+.++++++|.++...+..+........
T Consensus 183 ~~~~~~~-------~~~~~--------~~-----------~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 233 (396)
T TIGR00882 183 KPKAPSS-------ATVAN--------AL-----------G---ANASAFSLKLALELFRQRKFWMFVLYVVGVACVYDV 233 (396)
T ss_pred CCCCchh-------hhhhc--------cc-----------c---cccCCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 4554320 00000 00 0 000111223577888888765544444333332222
Q ss_pred hhhcccccc----ccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646 327 VYYGMPLGL----GSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI 399 (509)
Q Consensus 327 ~~~~~~~~~----~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
.....+.+. .+.+.+... ...+..+...++.+..+++.||+|+|+.+.++..+.++...+.... .+.+...
T Consensus 234 ~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~--~~~~~~~ 311 (396)
T TIGR00882 234 FDQQFANFFTSFFATPQQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFA--TTALEVV 311 (396)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhc--CChHHHH
Confidence 211222222 222333222 2333446677778889999999999999888887777766554442 2233323
Q ss_pred HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHH-HHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH
Q 040646 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISM-VRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF 475 (509)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~-~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 475 (509)
...++.+.+..........+..+..|++.++++.+. .+....+|+.++|.+.+.. ..++...+.+.+++.++..+.
T Consensus 312 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~ 390 (396)
T TIGR00882 312 ILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLI 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 333333333333333445567777888888887766 5677899999999888833 234556677766666555544
No 88
>PTZ00207 hypothetical protein; Provisional
Probab=99.92 E-value=2.6e-23 Score=206.26 Aligned_cols=377 Identities=11% Similarity=0.009 Sum_probs=237.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH------hHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS------TNMWIYS 165 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~l~ 165 (509)
.|.+++++|+ +..+.+++.++. ....+++++.|++.|| +|||+++.++.++++++.++++++ ++++.+.
T Consensus 50 s~~L~~~lgl---s~~~l~~i~svg-~~~g~~~lp~G~L~Dr-~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~ 124 (591)
T PTZ00207 50 SGAMQARYNL---TQRDLSTITTVG-IAVGYFLLPYSFIYDY-LGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLS 124 (591)
T ss_pred HHHHHHHhCc---CHHHHHHHHHHH-HHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 5789999999 455788888764 4456678889999999 999999999999999999999997 6899999
Q ss_pred HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHH-HHHHHHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646 166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLS-LPAIAYINRGSSWRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 244 (509)
+.|++.|+|.+...+.....+.+|+| ++||++.|+...+.++|.++ +++...+.. .+|+..|++.+++.++..++..
T Consensus 125 l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~ 202 (591)
T PTZ00207 125 VYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAI 202 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999996 78999999999999999876 444443333 3599999988888888777776
Q ss_pred eeecCch--HHHHhcCCHHHHHHHHHHHH---------------------------------------------------
Q 040646 245 FLVRESP--RWLFIQGRKEEAVSIIKSIS--------------------------------------------------- 271 (509)
Q Consensus 245 ~~~~esp--~~~~~~~~~~~~~~~~~~~~--------------------------------------------------- 271 (509)
.++++.| ++...+++.++.++..++..
T Consensus 203 ~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v 282 (591)
T PTZ00207 203 VFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVT 282 (591)
T ss_pred hheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 6666554 33322221111111100000
Q ss_pred ------------------hhcCCc-cccc-cccCcc-----cccc--------c-ccccchhHHHHHHhchHHHHHHHHH
Q 040646 272 ------------------TSENQR-SLIM-DFNNVS-----FEQE--------T-WNVDLYSAIKILVEKKWALRRLSAI 317 (509)
Q Consensus 272 ------------------~~~~~~-~~~~-~~~~~~-----~~~~--------~-~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (509)
+..+++ +.+. +.++.+ .+.+ + ..++...++++.+++..+|..++..
T Consensus 283 ~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wll~~~~ 362 (591)
T PTZ00207 283 VIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWCLLWSI 362 (591)
T ss_pred HHHHHHHHHHHhhhHHHhccCCcCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHhchhHHHHHHHH
Confidence 000000 0000 000000 0000 0 0011112778888887766555554
Q ss_pred HHHHHHHhHhhhccccccccC-Cc--hH--HH-HHHHHHhhhhhHHHHHHHHhhhcCch--------h-HHHHHHHHHHH
Q 040646 318 MVTGFGIGMVYYGMPLGLGSL-SF--NL--YL-SVTFNALSELPASLITFFLIGKLKRK--------S-SLLGFTIMSGV 382 (509)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~-g~--~~--~~-~~~~~~~~~~~~~~~~g~l~dr~gr~--------~-~~~~~~~~~~~ 382 (509)
++.+.......+.+..+.+.+ |. +. .. ...+.++.+.+|++..|++.....+| . .+.+..+ +.+
T Consensus 363 ~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~ 441 (591)
T PTZ00207 363 FCCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CII 441 (591)
T ss_pred HHhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHH
Confidence 444333333333334444445 43 11 11 45777899999999999877222221 2 2333333 444
Q ss_pred HHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHH-HHHHHhh-------
Q 040646 383 CSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFS-PVLVAAG------- 454 (509)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~-p~~~~~~------- 454 (509)
+.+++.+.. +.. ...+-.++.+++.+..+++....++|+|. ++-|+-.-+.....-+|..+. ..+.|..
T Consensus 442 ~~lll~~~~-p~~-~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k 518 (591)
T PTZ00207 442 TMLTLFLTL-PKA-ALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADK 518 (591)
T ss_pred HHHHHHHHC-Ccc-HhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444444422 212 23334456667888888999999999999 777877777776666666654 3343311
Q ss_pred --------cccchhHHHHHHHHHHHHHHHHhhc
Q 040646 455 --------RQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 455 --------~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
..-...++++++++++++.+....+
T Consensus 519 ~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~l 551 (591)
T PTZ00207 519 LGQDVCTERVCVVMPLAFLLGLSFLAFITSTYV 551 (591)
T ss_pred CCCCeeCCceeeHhHHHHHHHHHHHHHHHHhhe
Confidence 1113457888888887777765433
No 89
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.92 E-value=6.5e-23 Score=203.07 Aligned_cols=337 Identities=16% Similarity=0.125 Sum_probs=235.0
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----hHHHHHHHHHHHHhhccchhh
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----TNMWIYSVLRFINGFGRATIG 179 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----~~~~~l~~~r~l~G~~~g~~~ 179 (509)
|...++++..+..+...+.++++|.++|| ++||++++.+.++.++..++.++. .+.+.+++.-++.|++.+...
T Consensus 43 S~~~valv~~a~~LP~~Llsl~aG~laDr-~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~ 121 (524)
T PF05977_consen 43 SPLMVALVQAASTLPILLLSLFAGALADR-FDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFN 121 (524)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 56689999999999999999999999999 999999999998877665555432 368899999999999999999
Q ss_pred hhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcC
Q 040646 180 TCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQG 258 (509)
Q Consensus 180 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~ 258 (509)
|...+++.|..|+++...+.++.+...++..++||.+| .++...|-.+.|.+.++..++.. .....++..++ +
T Consensus 122 PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i-~~l~~~~~~~~----~- 195 (524)
T PF05977_consen 122 PAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISI-LALLRWKPPPP----P- 195 (524)
T ss_pred HHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcccccc----c-
Confidence 99999999999999999999999999999999999994 56666778888988877666543 32233332110 0
Q ss_pred CHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccc-c
Q 040646 259 RKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-S 337 (509)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 337 (509)
+....++..+.+ ...++-+.++|..+..+...++..+........+|++.+ .
T Consensus 196 ~~~~~e~~~~~l---------------------------~~G~ryv~~~~~l~~~l~~~~~~~l~~~a~~aLlPl~a~~~ 248 (524)
T PF05977_consen 196 SSLPRERFFSAL---------------------------REGLRYVRSSPPLRSVLLRSFLFNLFASAVWALLPLFARDV 248 (524)
T ss_pred cccchhhhhhhH---------------------------HHHHHHHhcchHHHHHHHHHHHHHHhhhHHHHhhhHHHHHH
Confidence 000000111111 123455555666554444444444433333344566654 3
Q ss_pred CCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhH
Q 040646 338 LSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFS 414 (509)
Q Consensus 338 ~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (509)
++.++...+ ...+++.++|.++.+++.+|+++++++..+.++.+++.+.+.+. ++.+......++.+++......
T Consensus 249 l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~--~~~~~~~~~l~l~G~~~~~~~~ 326 (524)
T PF05977_consen 249 LGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALS--PSFWLALIALFLAGAAWIIANS 326 (524)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHH
Confidence 566554443 44558888999999999999999888888887777776666663 3334444444455555555556
Q ss_pred HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHh
Q 040646 415 LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 415 ~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
...+...+..|++.||+++++..+....+..+|.++.|... .+....+.+.++..+++.++..
T Consensus 327 ~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 327 SLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999888777777777777322 2333444444544444444433
No 90
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.91 E-value=4e-22 Score=198.31 Aligned_cols=371 Identities=11% Similarity=0.021 Sum_probs=222.7
Q ss_pred eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchh
Q 040646 99 WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATI 178 (509)
Q Consensus 99 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 178 (509)
+|+ +..+.+++.+.+.++..++++++|+++||++|||+++.++.++.+++.++.+++++++.+.++|++.|++.|..
T Consensus 43 lg~---s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~ 119 (475)
T TIGR00924 43 LGF---SQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLF 119 (475)
T ss_pred CCC---CHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccc
Confidence 788 45589999999999999999999999998459999999999999999999999999999999999999999999
Q ss_pred hhhheeeeEeeccCcc---cchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeec----Cc
Q 040646 179 GTCAIVLSTELVGKKR---RGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVR----ES 250 (509)
Q Consensus 179 ~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~----es 250 (509)
.+...++++|++|+++ |+++.+++..+.++|.+++|++ +++.++.|||+.|.+.++..++.. +.+.+.+ +.
T Consensus 120 ~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~-l~~~~~~~~~~~~ 198 (475)
T TIGR00924 120 KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGL-LTFFAGRHMLRDI 198 (475)
T ss_pred cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH-HHHHHcccccccC
Confidence 9999999999998754 8889999999999999999999 567777899999998776544432 2222222 22
Q ss_pred hHHHHhcCCHHHHHHHHHHH----------Hh-hcCCcccccccc-C-------cccccccccccchhHHHHHHhchHHH
Q 040646 251 PRWLFIQGRKEEAVSIIKSI----------ST-SENQRSLIMDFN-N-------VSFEQETWNVDLYSAIKILVEKKWAL 311 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~~~~~~~-~-------~~~~~~~~~~~~~~~~~~l~~~~~~~ 311 (509)
|+. ..+.+.++........ .. ....+....... . ........++ ..+..+-.|.....
T Consensus 199 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l 275 (475)
T TIGR00924 199 GSV-PDPLSGQGKTYGKLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKP--RLDAVARNKMYAYI 275 (475)
T ss_pred CCC-CCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhc--cCCHHHHhHHHHHH
Confidence 210 0000001100000000 00 000000000000 0 0000000000 00000000111111
Q ss_pred HHHHHHHHHHHHHhHhhhcccccccc--------CCchHHHHHHHHHhhhhhHHHHHHHHhhhcCc-----hhHH--HHH
Q 040646 312 RRLSAIMVTGFGIGMVYYGMPLGLGS--------LSFNLYLSVTFNALSELPASLITFFLIGKLKR-----KSSL--LGF 376 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr-----~~~~--~~~ 376 (509)
..++...+.+.........++.+.++ ...++.....+.++..++..++..++..|++| +... .++
T Consensus 276 ~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G 355 (475)
T TIGR00924 276 VLFLEAVVFWVLYAQMPTSLNFFADNNMHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLG 355 (475)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHH
Confidence 22222223333333333333332221 11224444445555444444443333333332 3333 566
Q ss_pred HHHHHHHHHHHHHh-------ccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646 377 TIMSGVCSVLCVVM-------GKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV 449 (509)
Q Consensus 377 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~ 449 (509)
.++.++++..+.+. ...+.++.+...++..++.....|....+..+..|++.|++.+|+......+|..+++.
T Consensus 356 ~~l~~~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~ 435 (475)
T TIGR00924 356 MLFCGASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGY 435 (475)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77776666655431 11234444555556667777888999999999999999999999999999999999888
Q ss_pred HHHhh--cccchhHHHHHHHHHHHHHHHH
Q 040646 450 LVAAG--RQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 450 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
+.... ..+....+...++..++..++.
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (475)
T TIGR00924 436 LATFGAVPQGVTGVFGKIGLVTLLVGVVM 464 (475)
T ss_pred HHHHHhcccchhhHHHHHHHHHHHHHHHH
Confidence 87632 2223344555555555444444
No 91
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=99.91 E-value=2e-23 Score=213.18 Aligned_cols=279 Identities=16% Similarity=0.126 Sum_probs=197.5
Q ss_pred CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-----------
Q 040646 91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----------- 159 (509)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----------- 159 (509)
.+|+++++|++ ++.+.|++.+.+.++++++.++.|+++|| +|||+++.+++++++++++++++.+
T Consensus 55 ~l~~iek~F~l---ss~~~G~i~s~~~i~~~~~~i~v~~~~~r-~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~ 130 (633)
T TIGR00805 55 SLTTIERRFKL---STSSSGLINGSYEIGNLLLIIFVSYFGTK-LHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTT 130 (633)
T ss_pred hchhhhhhhCC---CCCcceeeeehhhHHHHHHHHHHHHhhcc-cCcceEEEecHHHHHHHHHHHhChHHhcCCcccccc
Confidence 38999999999 55589999999999999999999999999 9999999999999999999998764
Q ss_pred ----------------------------------------HHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhh
Q 040646 160 ----------------------------------------NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVG 199 (509)
Q Consensus 160 ----------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~ 199 (509)
.+..++++|+++|+|.+..++...+++.|++|+++|++++
T Consensus 131 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~ 210 (633)
T TIGR00805 131 VSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYI 210 (633)
T ss_pred ccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHH
Confidence 2557889999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHH-HHhcCC----------------------cchHHHHHHHhhHHHHHHHhheeecCc-hHHHH
Q 040646 200 SIGFFCFTLGFLSLPAIA-YINRGS----------------------SWRRIYLYTSIPTILYCILVRFLVRES-PRWLF 255 (509)
Q Consensus 200 ~~~~~~~~~G~~~~~~~~-~~~~~~----------------------~wr~~f~~~~~~~~~~~~~~~~~~~es-p~~~~ 255 (509)
+++..+..+|.++|++++ ++...+ +||..|++.+++.++.+++. +++|+. |+..
T Consensus 211 ~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l-~~~p~~lp~~~- 288 (633)
T TIGR00805 211 GILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF-FFFPKALPKEG- 288 (633)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HhCccccCCcc-
Confidence 999999999999999984 443221 27778888888888766544 455543 3210
Q ss_pred hcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc
Q 040646 256 IQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL 335 (509)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (509)
.+.+.++.+ +.. .+. .. ++...+.....++....++.++++|.++...+..++...........+|.++
T Consensus 289 ~~~~~~~~~----~~~--~~~-~~----~~~~~~~~~~~~~~~~~~~~Ll~n~~f~~~~l~~~~~~~~~~~~~~~lP~yl 357 (633)
T TIGR00805 289 KRVNVDVHE----TEK--LEK-SE----DKSRKKNSDITKDFPKIIKRLLCNPIYMLVILAQVIDSLAFNGYITFLPKYL 357 (633)
T ss_pred cccchhhhh----hhc--ccc-cc----cccchhhhhhHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 000 000 00 0000000001112234577899999877777776666666655555566666
Q ss_pred c-cCCchHHHHHHHHHh----hhhhHHHHHHHHhhhcCc--hhHHHHHHHHHHHHHHH
Q 040646 336 G-SLSFNLYLSVTFNAL----SELPASLITFFLIGKLKR--KSSLLGFTIMSGVCSVL 386 (509)
Q Consensus 336 ~-~~g~~~~~~~~~~~~----~~~~~~~~~g~l~dr~gr--~~~~~~~~~~~~~~~~~ 386 (509)
+ .++.++..+..+.++ +.++|.+++|+++||+++ |+.+..+.++..++.+.
T Consensus 358 ~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 358 ENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred HHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHHHHHHHHHHHHHH
Confidence 5 578887776655442 456788999999999984 45555555555555433
No 92
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=1.4e-23 Score=189.95 Aligned_cols=332 Identities=17% Similarity=0.125 Sum_probs=226.1
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV 184 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 184 (509)
++.++|++.+++.+...+.+++.|.+.|| +|+|-.+++|+.+...+++++++..+|++++++|.++|+|.+...+...+
T Consensus 104 e~~~iG~LFaskA~~qllvnp~~G~l~~~-iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 104 ENTQIGLLFASKALVQLLVNPFFGNLIDR-IGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred cccchhHHHHHHHHHHHHhcccchhhHHH-hccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 45699999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccCc-ccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHH
Q 040646 185 LSTELVGKK-RRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEE 262 (509)
Q Consensus 185 ~i~e~~~~~-~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~ 262 (509)
+++|.+|++ +|++++|+.-.+.++|.++||.+| .+-+..|.+.+|++.++++++-..+.++.++.+.. +.+
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~------~~~- 255 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM------DPD- 255 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc------Ccc-
Confidence 999999865 589999999999999999999995 66677899999999999999977676666654311 000
Q ss_pred HHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccc-cCC--
Q 040646 263 AVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLG-SLS-- 339 (509)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g-- 339 (509)
+.++..++++++++|..+...........+..+.-=.++.+.. ...
T Consensus 256 -------------------------------~~~~~~~~~~Ll~dP~I~~~agai~~~n~~lafLePtlslwm~e~m~~p 304 (464)
T KOG3764|consen 256 -------------------------------STEQGTPMWSLLMDPYILLIAGAITFSNSSLAFLEPTLSLWMLETMFTP 304 (464)
T ss_pred -------------------------------ccccCccHHHHHhCchHhhhhcchhhccchHHHhCcccHHHHHHhccCC
Confidence 1112235788999987544433333333333333222333222 222
Q ss_pred -chHHHHHHHHHhhhhhHHHHHHHHhhhcCchhH--HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHH
Q 040646 340 -FNLYLSVTFNALSELPASLITFFLIGKLKRKSS--LLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLL 416 (509)
Q Consensus 340 -~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (509)
+....+....++...++..+.|.+.||++..+. ...+.+..+.++....+...... .++....++ ++.....+..
T Consensus 305 ~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~~~~~~~-L~vp~~~l~-~~i~~~dasl 382 (464)
T KOG3764|consen 305 GWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPFATSIAQ-LWVPNFGLG-FGIGLADASL 382 (464)
T ss_pred CcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhHhhhhHHH-HhhhhHHHH-HHHHHHHHHH
Confidence 222334444557788899999999999994433 33444444443333333222111 111111111 2222222222
Q ss_pred ---Hhhcccccchh---hhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHh
Q 040646 417 ---LIYTLELFPTC---VRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 417 ---~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
..+..|.-..+ ..|...++......+|.+++|.+.+... .+..+...+.+...++-+-++.
T Consensus 383 ~P~l~~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ 451 (464)
T KOG3764|consen 383 IPTLGYLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLL 451 (464)
T ss_pred hhhhHHhcchhhccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 23333332223 5577888888888999999999998433 3344445555555555444433
No 93
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=99.90 E-value=8.5e-22 Score=179.82 Aligned_cols=319 Identities=17% Similarity=0.103 Sum_probs=236.4
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMWIYSVLR 168 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r 168 (509)
.|++++.|++ +..+.+++...++.|+.+++++.|++.+| +|+|+.+++++.++++++.++. ...+|..++++-
T Consensus 36 ip~l~~~f~l---s~~~a~liqfaff~gYf~~~lpa~~~~kk-~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~l 111 (422)
T COG0738 36 IPHLKEVFDL---TYFEASLIQFAFFGGYFIMSLPAGLLIKK-LGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVAL 111 (422)
T ss_pred HHHHHHHhCc---cHHHHHHHHHHHHHHHHHHhccHHHHHHH-hhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 8999999999 55589999999999999999999999999 9999999999999999999985 556899999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-------------------CcchHH
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-------------------SSWRRI 228 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-------------------~~wr~~ 228 (509)
++.|.|.+...+.+..++....++++..+.+.+.+...++|.+++|++ ++++.+ ..||++
T Consensus 112 Fila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~p 191 (422)
T COG0738 112 FILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFP 191 (422)
T ss_pred HHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhH
Confidence 999999999999999999999999888999999999999999999999 454431 247888
Q ss_pred HHHHHhhHHHHHHHhhe-eecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhc
Q 040646 229 YLYTSIPTILYCILVRF-LVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEK 307 (509)
Q Consensus 229 f~~~~~~~~~~~~~~~~-~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 307 (509)
|...+...+++.+.... -.|+.+. + .++..+.+.....+++++
T Consensus 192 Yl~~~~~lvll~v~~~~~k~p~~~~--------~----------------------------~~~~~~~~~~~~~~l~~~ 235 (422)
T COG0738 192 YLILAGLLVLLAVLILLSKLPDLQV--------A----------------------------APSLGASGSAGLSSLFQN 235 (422)
T ss_pred HHHHHHHHHHHHHHHHhccCCcCCc--------c----------------------------cccccccccchHHHHHhC
Confidence 88877776665543321 1122110 0 000001111146788999
Q ss_pred hHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 040646 308 KWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVC 383 (509)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~ 383 (509)
|..+...+..++...........++.++.+ .|.+... .......+.++|++++.++..|+...|.+....++..+.
T Consensus 236 ~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill 315 (422)
T COG0738 236 KHLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILL 315 (422)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 987776666665555444444444444444 5655433 334445778899999999999999999988887777766
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc
Q 040646 384 SVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR 455 (509)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~ 455 (509)
++...+.+. ...... ..+.++..+..+|...+...+..| ++. ...|..-....+|+.+-|.+.|...
T Consensus 316 ~~~~~l~~g--~v~~~~-l~~ig~F~simfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~ 382 (422)
T COG0738 316 LLAVALIGG--VVALYA-LFLIGLFNSIMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIA 382 (422)
T ss_pred HHHHHHhcC--hHHHHH-HHHHHHHhHHHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHH
Confidence 666666443 333333 344556677889999999999999 433 3334444566788889999988443
No 94
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.90 E-value=1e-22 Score=183.16 Aligned_cols=324 Identities=16% Similarity=0.141 Sum_probs=202.5
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV 184 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 184 (509)
+....|.+.|.|+++..+.++.+|.++|| +|||++++++++..++..++.+.+.|+..+++.|++.|+.-| ...+..+
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~-yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kg-nl~v~rA 143 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDR-YGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKG-NLSVIRA 143 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhh-hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccC-chHHHHH
Confidence 45578999999999999999999999999 999999999999999999999999999777788999999977 4667789
Q ss_pred eeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc--CCcchHHHHHHHhh----HHHHHHHhheeecCchHHHHhc
Q 040646 185 LSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR--GSSWRRIYLYTSIP----TILYCILVRFLVRESPRWLFIQ 257 (509)
Q Consensus 185 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~--~~~wr~~f~~~~~~----~~~~~~~~~~~~~esp~~~~~~ 257 (509)
+++|.+++|+|++.++.....+++|.++||.+| ++.. +..-+++|.....+ ...-.....+++||+-+ .+
T Consensus 144 iisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~---~r 220 (451)
T KOG2615|consen 144 IISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLP---LR 220 (451)
T ss_pred HHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCcccc---ch
Confidence 999999999999999999999999999999995 4443 11122333332222 22212234577899832 11
Q ss_pred CCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHH-------HHHHHHHHHHHHhHhhhc
Q 040646 258 GRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALR-------RLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 330 (509)
++.++... ..+. .+++ .+....+ ...-....+++.... ..+..+...+.....-+.
T Consensus 221 k~~~~~~~-~~~~---~~~~---~~~~~~~----------~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t 283 (451)
T KOG2615|consen 221 KRNDEHST-LQEA---ADDR---LALLKFA----------RIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENT 283 (451)
T ss_pred hhcccccc-hhhh---hhhh---hhhcchh----------hhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11111100 0000 0000 0000000 000111222322211 111111122222222222
Q ss_pred cccc-cccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchh-----HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 331 MPLG-LGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKS-----SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 331 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
.+.+ -+.+|+++...+-+....++.+.++.+.+..+..|.+ .+.....++.-..+++... ..+........+
T Consensus 284 ~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~~--~~~~~l~~~s~l 361 (451)
T KOG2615|consen 284 VLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSLA--RTPVVLYLGSTL 361 (451)
T ss_pred HHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhcc--ccchhhhHHHHH
Confidence 2222 3567888777776666667777777777766665544 3333333333333333322 222222222233
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
-.+......+....+.....|+++||+..|+....+.++-++||.+.|
T Consensus 362 ~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 362 KSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred HHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence 334444455667788889999999999999999999999999999997
No 95
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=99.90 E-value=4.2e-21 Score=187.64 Aligned_cols=341 Identities=9% Similarity=-0.028 Sum_probs=218.8
Q ss_pred Ccceeeeeccccccccccchh--HHHHHHHHHHHHhhh-hhccccCCCchHHHHHHHHHH-HHHHHHHH---HHhH-HHH
Q 040646 92 HTSIISEWDLECASSLIKGLP--ASSFFMGCLAGGLIL-ATLADSSLGRKNMLFLSCLMM-SVSCLLTI---FSTN-MWI 163 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~--~s~~~~~~~i~~~~~-g~l~dr~~Grr~~l~~~~~~~-~i~~~~~~---~~~~-~~~ 163 (509)
+|.+.+|.|. +..++|++ .+.+.+...+.+|+. ++..|| +||||..++...+. ++.....+ ...+ ..+
T Consensus 24 lp~~l~~~g~---~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~-~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (390)
T TIGR02718 24 LPTLLREDGA---PLTALAFLPLVGLPWVVKFLWAPLVDNWWSWR-LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGW 99 (390)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-CCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHH
Confidence 7888899998 55589997 467788888888888 457999 99998875555332 21222222 1222 334
Q ss_pred HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
++..-++.++..+...+...++..|..++++++...+....+..+|.++++.. +++.+..|||..|++.++..++..+.
T Consensus 100 ~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~ 179 (390)
T TIGR02718 100 AVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVC 179 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 44555666677777888888888888888888888888888889999999877 57778889999999999887765544
Q ss_pred hheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHH
Q 040646 243 VRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGF 322 (509)
Q Consensus 243 ~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (509)
..+..|++|+ +.+.+ ++...++++++|+|..+......++...
T Consensus 180 ~~~~~~~~~~----~~~~~---------------------------------~~~~~~~~~~l~~~~~~~~~~~~~l~~~ 222 (390)
T TIGR02718 180 VLWLKDRAVA----SPEAP---------------------------------LARRASLFRFFRRPLAWSLLALALLSAM 222 (390)
T ss_pred HHHcCCCCcC----ccccc---------------------------------hhhHHHHHHHHcCcCHHHHHHHHHHHHH
Confidence 4333333221 00000 0011246778888876655555555544
Q ss_pred HHhHhhhccccccccCCchHHHHHHHHH----hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc----cch
Q 040646 323 GIGMVYYGMPLGLGSLSFNLYLSVTFNA----LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG----KIW 394 (509)
Q Consensus 323 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~----~~~ 394 (509)
.....+...+.+.++.|.+......+.. ...+++.++.|++.||+|+|+.+..+..+.++..+...... ...
T Consensus 223 ~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (390)
T TIGR02718 223 TAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPG 302 (390)
T ss_pred HHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCc
Confidence 4444444456666778888777665543 34556788999999999999998877665533322222111 111
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcccccch-hhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHH
Q 040646 395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPT-CVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGL 471 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~ 471 (509)
.........+..+..+...+.......+..++ +.+++.+++.+....+|..++|.+.+... .++...+...+++.++
T Consensus 303 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~ 382 (390)
T TIGR02718 303 IAVAWSCSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVL 382 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 12222222233333445555556665566665 78999999999999999999999988332 2333455555554444
Q ss_pred HH
Q 040646 472 CG 473 (509)
Q Consensus 472 ~~ 473 (509)
+.
T Consensus 383 a~ 384 (390)
T TIGR02718 383 AI 384 (390)
T ss_pred HH
Confidence 43
No 96
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=99.89 E-value=2.3e-20 Score=184.05 Aligned_cols=351 Identities=14% Similarity=0.107 Sum_probs=215.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
++.|..|+|-+. ...|+.+...++.+++.++.|.++|. ||||.+++.+.++..+|+++++.++|...++++..+.
T Consensus 67 l~~I~~diG~~~----~~~w~~~~~~l~~av~~~~~G~LSDl-fGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~ 141 (599)
T PF06609_consen 67 LPYINADIGGSD----NWSWFSTAWTLASAVSFPFVGRLSDL-FGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLY 141 (599)
T ss_pred HHHHHHhcCCCc----cchHHHHHHHHHHHHHHHhhHHHHHH-hcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHH
Confidence 678888888643 47899999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhh-eeecC
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVR-FLVRE 249 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~~e 249 (509)
|+|.|..... ...++|..|.|.|+...++......+....++.++ .+..+.+|||.|++.++...+..++.. ++.|.
T Consensus 142 GvgaG~~~~~-~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP 220 (599)
T PF06609_consen 142 GVGAGVQELA-ALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPP 220 (599)
T ss_pred HHhhHHHHHH-HHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998776654 55589999999998877766655555555677775 445567899999998887666443333 33332
Q ss_pred chHHHHhcCC---HHHHHHHHHHHHh-------------hcCCccccccccCccc-----------------cccccccc
Q 040646 250 SPRWLFIQGR---KEEAVSIIKSIST-------------SENQRSLIMDFNNVSF-----------------EQETWNVD 296 (509)
Q Consensus 250 sp~~~~~~~~---~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~-----------------~~~~~~~~ 296 (509)
+ +...+++ ..+..+.++.+.. -.-......+.+..+. |..... +
T Consensus 221 ~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~-~ 297 (599)
T PF06609_consen 221 P--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAP-K 297 (599)
T ss_pred c--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccC-C
Confidence 2 2111221 1121222211100 0000000111111111 100111 1
Q ss_pred chhHHHHHHhchHHHHHH-HHHHHHHHHH-hHhhhccccccccCCch------HHHHHHHHHhhhhhHHHHHHHHhhhcC
Q 040646 297 LYSAIKILVEKKWALRRL-SAIMVTGFGI-GMVYYGMPLGLGSLSFN------LYLSVTFNALSELPASLITFFLIGKLK 368 (509)
Q Consensus 297 ~~~~~~~l~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~g~~------~~~~~~~~~~~~~~~~~~~g~l~dr~g 368 (509)
.+--..++|++++..... ++.++..... ...+++.......++.+ ........+++..+|.++.+.+..+++
T Consensus 298 ~Pl~P~~Lf~~~r~~~~~lvi~fi~G~~~~s~~~l~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir 377 (599)
T PF06609_consen 298 DPLFPHRLFKDRRGFAALLVISFISGMNFFSVNILWPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIR 377 (599)
T ss_pred CCcCCHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHcc
Confidence 111234577764322222 2222211111 11111111111111221 223344456677788888889988888
Q ss_pred chhHH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHH
Q 040646 369 RKSSL-LGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFS 447 (509)
Q Consensus 369 r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~ 447 (509)
|-|.. +++.+++.+++.++.....++....+.+.++.+++.+.........+.-..|++.-+++.|+...+..+|+.++
T Consensus 378 ~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg 457 (599)
T PF06609_consen 378 HIKWQLIFGSVLMTAFCGAMAAVRPDNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIG 457 (599)
T ss_pred chhHHHHHHHHHHHHHHHHHHHccCCCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHH
Confidence 76654 46666666555555554444444445556666666666655666777778899999999999988888877766
Q ss_pred HHHH
Q 040646 448 PVLV 451 (509)
Q Consensus 448 p~~~ 451 (509)
..+.
T Consensus 458 ~aIy 461 (599)
T PF06609_consen 458 YAIY 461 (599)
T ss_pred HHHH
Confidence 5543
No 97
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=99.88 E-value=1.2e-19 Score=176.78 Aligned_cols=362 Identities=12% Similarity=0.077 Sum_probs=233.3
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCchHHHHHH-HHHHHHHHHHHHHHhHHH------
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRKNMLFLS-CLMMSVSCLLTIFSTNMW------ 162 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr~~l~~~-~~~~~i~~~~~~~~~~~~------ 162 (509)
+.+.+++|. +..+.+++..+..+...+.+|+.|+++|| |+||||.++++ .....++.++.+++++.+
T Consensus 28 ~~yl~~lg~---~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~ 104 (477)
T TIGR01301 28 TPYVQELGI---PHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDN 104 (477)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhcccc
Confidence 445667888 55589999999999999999999999994 49999998775 666666667777766643
Q ss_pred -----------HHHHHHHHHhhccchhhhhheeeeEeeccCccc--chhhhhhHHHHHHHHHHHHHHHHHh---cC----
Q 040646 163 -----------IYSVLRFINGFGRATIGTCAIVLSTELVGKKRR--GQVGSIGFFCFTLGFLSLPAIAYIN---RG---- 222 (509)
Q Consensus 163 -----------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~~---~~---- 222 (509)
.++++-.+..++.....+...++++|.+|+++| +.+.++.+.+.++|.++++.++.+. ..
T Consensus 105 ~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~ 184 (477)
T TIGR01301 105 LDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFT 184 (477)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccc
Confidence 233333445557787888889999999998865 5799999999999999999986442 11
Q ss_pred ---------CcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccc
Q 040646 223 ---------SSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETW 293 (509)
Q Consensus 223 ---------~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (509)
.+.|..|++.++..++..++..+..+|.|.. ..++..+ ++.+ ..++.
T Consensus 185 ~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~-----~~~~~~~---------------~~~~---~~~~~- 240 (477)
T TIGR01301 185 KTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLI-----GSDDFIN---------------SEAA---PPSKH- 240 (477)
T ss_pred cccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCC-----ccccchh---------------hhcc---ccccc-
Confidence 1568899998888888777888889997531 0000000 0000 00000
Q ss_pred cccchhHHHHHHh-----chHHHHHHHHHHHHHHHHhHhhhccccccc-c-CC--------chH-----HHHHHHHHhhh
Q 040646 294 NVDLYSAIKILVE-----KKWALRRLSAIMVTGFGIGMVYYGMPLGLG-S-LS--------FNL-----YLSVTFNALSE 353 (509)
Q Consensus 294 ~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~g--------~~~-----~~~~~~~~~~~ 353 (509)
+....++++++ .+.+++..++.++.|++.....++.+.+.. + ++ ++. .....+.++..
T Consensus 241 --~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~ 318 (477)
T TIGR01301 241 --GEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVL 318 (477)
T ss_pred --chhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHH
Confidence 00011222222 245566666777777766544333222221 1 11 111 12233444555
Q ss_pred hhHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHhcc---c--h--------------hHHHHHHHHHHHHHHHHHh
Q 040646 354 LPASLITFFLIGKLKR-KSSLLGFTIMSGVCSVLCVVMGK---I--W--------------TSVEIGLELVAFFSACTAF 413 (509)
Q Consensus 354 ~~~~~~~g~l~dr~gr-~~~~~~~~~~~~~~~~~~~~~~~---~--~--------------~~~~~~~~~~~~~~~~~~~ 413 (509)
.+.+++..++.+|+|+ |++..++.++.++++....+... + . .+..+..+...++.....+
T Consensus 319 ~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~~~ 398 (477)
T TIGR01301 319 GITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAITY 398 (477)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHHHH
Confidence 5667778889999985 66667887777777776665332 0 0 1333444455556666777
Q ss_pred HHHHhhcccccch--hhhhhHHHHHHHHHhHhhHHHHHHHH----hhcccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646 414 SLLLIYTLELFPT--CVRNSAISMVRQALVFGGVFSPVLVA----AGRQNNFLSYGIFGLVIGLCGLFV-IGLPETR 483 (509)
Q Consensus 414 ~~~~~~~~~~~p~--~~r~~~~g~~~~~~~~g~~i~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 483 (509)
.+.++++++..|+ +..|..+|+.|.+..+.+++..+..+ ....+....+.+.++..++++++. +.+|+.+
T Consensus 399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR 475 (477)
T ss_pred HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 8889999999985 45589999999988777776555444 333344556666677777777765 4566654
No 98
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=99.88 E-value=6.3e-21 Score=189.16 Aligned_cols=337 Identities=13% Similarity=0.047 Sum_probs=214.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC-----chHHHHHHHHHHH-HHHHHHHHHhHHH-HH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG-----RKNMLFLSCLMMS-VSCLLTIFSTNMW-IY 164 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G-----rr~~l~~~~~~~~-i~~~~~~~~~~~~-~l 164 (509)
.|.+.+++|+ +..+.+...+...+...+-.+ +|+++|| ++ ||+.++++.++.+ ++....+..++.. ..
T Consensus 49 ~~~l~~~lg~---s~~~i~~~~sl~~lpw~~K~l-~g~l~D~-~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~ 123 (468)
T TIGR00788 49 SPMLTDDLGL---DGARYQRLVGLSSLGWALKPF-AGVMSDT-FPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVA 123 (468)
T ss_pred hHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHH-HHHHHHh-cCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHH
Confidence 6778888999 555898999999999999765 9999999 98 7787888877763 4333333335544 44
Q ss_pred HHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHH---HHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646 165 SVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCF---TLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 165 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~---~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~ 240 (509)
.+.+++.+++.+...+...++..|..+ +++....+.....+ .+|.++++.+ +.+.+..+||..|++.+.+.++.
T Consensus 124 ~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~- 201 (468)
T TIGR00788 124 AAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQ- 201 (468)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHH-
Confidence 448899999999999999999999998 55555444443433 4799999888 56677789999999988887775
Q ss_pred HHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH-
Q 040646 241 ILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV- 319 (509)
Q Consensus 241 ~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~- 319 (509)
.....++||++.....+.+.++.... ... .........+.....+..+++|..++.+...++
T Consensus 202 ~~~~~~~~E~~~~~~~~~~~~~~~~~-~~~----------------~~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~ 264 (468)
T TIGR00788 202 LFVSNLSKERRAFVRPRIGTYLEMNM-ALL----------------TLGVLANVKVQILGLRGAIQLLEIAKPLIFIFLS 264 (468)
T ss_pred HHHHHhcccccccccccccccchhhh-hhh----------------hhhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 34456778753100000000000000 000 000000001112235556777776654444444
Q ss_pred HHHHHhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc----
Q 040646 320 TGFGIGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK---- 392 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~---- 392 (509)
.....+......-+.....|.++...+ ...+++.+++..+.+++.+|++.|+++.++.++.+++.........
T Consensus 265 ~~~~~~~~~~~f~~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~ 344 (468)
T TIGR00788 265 YANLPGASGSVFCATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNL 344 (468)
T ss_pred HhhcCCCCceeEEEEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccc
Confidence 222211111111122245677655543 4455778888888999999999999999888887776644321110
Q ss_pred ----chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 393 ----IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 393 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
...+......++..+..+..+.....++.+..|++.+++.+++.+.+.++|..+++.+.+
T Consensus 345 ~~gi~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg 408 (468)
T TIGR00788 345 AFGISDEVFVLGDSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGV 408 (468)
T ss_pred ccCCCCeeeeeehhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 111222223344445555666677899999999999999999999999999998887655
No 99
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=99.88 E-value=2e-19 Score=176.54 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=239.6
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHH-HHHHHHHHHHHHHHHHHH-h-HHHHHHHHHHHHhhccchhhhh
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNM-LFLSCLMMSVSCLLTIFS-T-NMWIYSVLRFINGFGRATIGTC 181 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~-l~~~~~~~~i~~~~~~~~-~-~~~~l~~~r~l~G~~~g~~~~~ 181 (509)
.+...++..++..+-.++..|+.|.++|+ -|+||. +.+..++..+++.+..+. + +++...+.-++.-++.+...+.
T Consensus 68 ~~s~~~~~~sis~l~~all~P~lGa~aD~-~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vf 146 (477)
T PF11700_consen 68 TSSLWLYANSISGLLQALLAPFLGAIADY-GGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVF 146 (477)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHcc-cccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 34467888999999999999999999999 776554 555566666677777764 3 4555555666666788888888
Q ss_pred heeeeEeeccCccc--------------------------chhhhhhHHHHHHHHHHHHHHHHH--hc-------CCcch
Q 040646 182 AIVLSTELVGKKRR--------------------------GQVGSIGFFCFTLGFLSLPAIAYI--NR-------GSSWR 226 (509)
Q Consensus 182 ~~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~~~~~~~~~--~~-------~~~wr 226 (509)
..+++.|..+++++ ++..+.-.....+|.++.-++... .. ..+-|
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r 226 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIR 226 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhh
Confidence 89999999999888 899998888888888877666422 11 12358
Q ss_pred HHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHh
Q 040646 227 RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE 306 (509)
Q Consensus 227 ~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 306 (509)
..+.+.++..++..+...+++||.|+....+..........+++. .+++++.+
T Consensus 227 ~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~l~---------------------------~t~k~~~~ 279 (477)
T PF11700_consen 227 VAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKRLW---------------------------RTFKEIRK 279 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHHHH---------------------------HHHHHHHh
Confidence 889999998888888888999987641000011111111222221 24566666
Q ss_pred chHHHHHHHHHHHHHHHHhHhh-hccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCch--hHHHHHHHHH
Q 040646 307 KKWALRRLSAIMVTGFGIGMVY-YGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRK--SSLLGFTIMS 380 (509)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~--~~~~~~~~~~ 380 (509)
.|...+.++..++..-+.+... ....+..+.+|++... ..++..+.+++|+++.+++.||+|.| +++.......
T Consensus 280 ~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~ 359 (477)
T PF11700_consen 280 LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW 359 (477)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence 6665555554444444443333 3333444467776544 34555688999999999999999998 7766665555
Q ss_pred HHHHHHHHH------hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh
Q 040646 381 GVCSVLCVV------MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG 454 (509)
Q Consensus 381 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~ 454 (509)
.+..+...+ ......+....+.++.+...+..++..-++.+|+.|+++.+..+|+..+.+...++++|++.+..
T Consensus 360 ~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i 439 (477)
T PF11700_consen 360 IIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLI 439 (477)
T ss_pred HHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322222 11233344455566677778888899999999999999999999999999999999999999832
Q ss_pred ---cccchhHHHHHHHHHHHHHHHHhhccCCCC
Q 040646 455 ---RQNNFLSYGIFGLVIGLCGLFVIGLPETRD 484 (509)
Q Consensus 455 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (509)
..+....+....++.+++.++.+.++..|.
T Consensus 440 ~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g 472 (477)
T PF11700_consen 440 TDATGSQRYGFLFLLVLFLIGLILLFFVDVEKG 472 (477)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHhhccchhh
Confidence 233445566666666666666666655443
No 100
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=99.88 E-value=1.3e-20 Score=188.58 Aligned_cols=351 Identities=12% Similarity=0.031 Sum_probs=203.3
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRFIN 171 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~ 171 (509)
.+.+++|++ ..+.+++.+.+........+++|+++|| + |||+++.++.++.+++.+++++++ +.+.+.++|+++
T Consensus 47 yl~~~lg~s---~~~a~~~~~~~~~~~~~~~~~~G~LaDr-~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~ 122 (500)
T PRK09584 47 YLVKQLGMS---EADSITLFSSFSALVYGLVAIGGWLGDK-VLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATI 122 (500)
T ss_pred HHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 445788884 3356777777776666666789999999 8 999999999999999999998875 566777899999
Q ss_pred hhccchhhhhheeeeEeeccCcc--cchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH---HHhhe
Q 040646 172 GFGRATIGTCAIVLSTELVGKKR--RGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC---ILVRF 245 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~---~~~~~ 245 (509)
|++.|...+...+++.|++|+++ |+.++++++.+.++|..++|.+ +++.++.|||+.|++.++..++.. +....
T Consensus 123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~ 202 (500)
T PRK09584 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQR 202 (500)
T ss_pred HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999998899999998653 4567888999999999999998 677788899999998775444322 22222
Q ss_pred eecCchHHHHhcCCHHHHHHHH-----------HHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHH
Q 040646 246 LVRESPRWLFIQGRKEEAVSII-----------KSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRL 314 (509)
Q Consensus 246 ~~~esp~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (509)
.++|.++. ..+++.+...... ..... .+.+........................++.-++|. .. .
T Consensus 203 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~ 278 (500)
T PRK09584 203 WVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLL-HNQEIARMALGVVALGIVVIFGKEAFAMKGAARRKM-IV-A 278 (500)
T ss_pred HhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHH-HH-H
Confidence 33332100 0000011000000 00000 000000000000000000000000000001111111 11 1
Q ss_pred HHHHHHHHHHhHhhhccccccc----------cCCc--hHHHHHHHHHhhhhhHHHHH----HHHhhhcCchhHHHHHHH
Q 040646 315 SAIMVTGFGIGMVYYGMPLGLG----------SLSF--NLYLSVTFNALSELPASLIT----FFLIGKLKRKSSLLGFTI 378 (509)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~----------~~g~--~~~~~~~~~~~~~~~~~~~~----g~l~dr~gr~~~~~~~~~ 378 (509)
+..++........+...+..+. ..|. +......+..+..++..++. +++.+|.+..+.+.++.+
T Consensus 279 ~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~ 358 (500)
T PRK09584 279 FILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMV 358 (500)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHH
Confidence 1111111112222222222211 1122 23444444454444454444 444555555567778888
Q ss_pred HHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 379 MSGVCSVLCVVMGKI-------WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 379 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
+.+++.+.+...... +.++.+...++.+++.....|....++.+..|++.||.++|+......+|+.++..+.
T Consensus 359 l~~l~f~~l~~~~~~~~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~ 438 (500)
T PRK09584 359 LCSGAFLVLPLGAKFANDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA 438 (500)
T ss_pred HHHHHHHHHHHHHHhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887776553221 1234444455566777777888999999999999999999988877777777776665
Q ss_pred H
Q 040646 452 A 452 (509)
Q Consensus 452 ~ 452 (509)
+
T Consensus 439 ~ 439 (500)
T PRK09584 439 N 439 (500)
T ss_pred H
Confidence 4
No 101
>PRK09669 putative symporter YagG; Provisional
Probab=99.88 E-value=2.2e-20 Score=185.49 Aligned_cols=320 Identities=13% Similarity=0.101 Sum_probs=207.4
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHhH------HHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFSTN------MWI 163 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~ 163 (509)
-..+++|+ +..++|.+.++..+..++..|+.|+++|| |+|| |+.++.+.+..+++.++....++ ++.
T Consensus 35 ~~t~~~gl---s~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~ 111 (444)
T PRK09669 35 FYTDVFGL---SAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIY 111 (444)
T ss_pred HHHHhcCC---CHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHH
Confidence 44567888 55589999999999999999999999999 5787 56666787777777766555542 456
Q ss_pred HHHHHHHHhhccchhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHH-----HHHhc---CCcchHHHHHHHh
Q 040646 164 YSVLRFINGFGRATIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAI-----AYINR---GSSWRRIYLYTSI 234 (509)
Q Consensus 164 l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~-----~~~~~---~~~wr~~f~~~~~ 234 (509)
+++..++.+.+.......-.++.+|+. ++++|++..++...+..+|..+++.+ ..+.. ..+|+..+.+.++
T Consensus 112 ~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~i 191 (444)
T PRK09669 112 ACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGL 191 (444)
T ss_pred HHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHH
Confidence 666777777776777777778899988 45889998888888878877666543 22221 3578988888888
Q ss_pred hHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHH
Q 040646 235 PTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRL 314 (509)
Q Consensus 235 ~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (509)
++++..+...+..+|.++ +++ +++.+...+++.++++|.++...
T Consensus 192 i~~v~~~~~~~~~~e~~~-------~~~-----------------------------~~~~~~~~~~~~~~~n~~~~~l~ 235 (444)
T PRK09669 192 LGVVLFFCCFFMTKERYT-------PEV-----------------------------DNSSSVWKDLKLLLGNSQWRIMF 235 (444)
T ss_pred HHHHHHHHHhCCeEEecC-------CCC-----------------------------cCCCCHHHHHHHHhCCchHHHHH
Confidence 777765555555555321 000 00111234577888888866655
Q ss_pred HHHHHHHHHHhHhhhccccccccCCchHH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 040646 315 SAIMVTGFGIGMVYYGMPLGLGSLSFNLY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG 391 (509)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
...++.............++.+..-.+.. .......+..+++.++.+++.||+|+|+.+..+.++.++....+.+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~ 315 (444)
T PRK09669 236 IFNVVLLTAVVTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP 315 (444)
T ss_pred HHHHHHHHHHHHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC
Confidence 54444433332222222222222111111 122233366677888899999999999998887766555444344433
Q ss_pred cchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 392 KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.++.+......++.+++.+...+..+++.+|..+ .+..|...|..+....+|..++|.+.+
T Consensus 316 ~~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g 383 (444)
T PRK09669 316 PSNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVG 383 (444)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334434444455566666777888889988875 233456677777777888887777765
No 102
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=99.87 E-value=3.2e-20 Score=166.90 Aligned_cols=316 Identities=16% Similarity=0.127 Sum_probs=243.7
Q ss_pred CCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646 90 QAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169 (509)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 169 (509)
|.+++|++|+|+ +....|+++++..+...+.+++..+++.| +|.++.+..++++..++.++-... +.+.++.+-.
T Consensus 33 PLL~~Ir~~~gl---s~s~aGlLTtLPll~fg~~ap~a~~Lar~-~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~ 107 (395)
T COG2807 33 PLLDEIRQDLGL---SFSVAGLLTTLPLLAFGLFAPAAPRLARR-FGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTL 107 (395)
T ss_pred hhHHHHHHHhcc---cHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 358999999999 55589999999999999999999999999 999999999999999999998887 7888999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcC-CcchHHHHHHHhhHHHHHHHhheee
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRG-SSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
+.|.|.+...+..+.++.+.+| |+-+..+++|....++|..+++.++ -+..+ .+||....+.+.++++..+.. +
T Consensus 108 l~G~gIav~nVLLPslIK~~Fp-k~~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~W---l 183 (395)
T COG2807 108 LAGAGIAVINVLLPSLIKRDFP-KRVGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIW---L 183 (395)
T ss_pred HHHhhHHHHHHhhhHHHHhhcc-cchhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHH---h
Confidence 9999999999999999999998 6779999999999999999888874 34444 479999999999998854332 3
Q ss_pred cCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHh
Q 040646 248 RESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMV 327 (509)
Q Consensus 248 ~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 327 (509)
|...| .+... .+.+..+...++++|.-|...+...+..+..+..
T Consensus 184 Pq~~r-----~~~~~-------------------------------~~~~~~~~~~vw~~~~aW~vtLfmGlqS~~~Y~~ 227 (395)
T COG2807 184 PQALR-----EQAAS-------------------------------IATKLVSVRKVWRSPLAWQVTLFMGLQSLLYYIV 227 (395)
T ss_pred hhccc-----ccccc-------------------------------cccccccccccccCchhHHHHHHHHhhHHHHHHH
Confidence 32111 00000 0001112345788887777777777777777777
Q ss_pred hhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL 403 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
...+|.++.+.|.+...++.+.+ +.+++.++....+.+|. ++|+.......++.++.+.+.+.+.+..+.. .+
T Consensus 228 ~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw---~~ 304 (395)
T COG2807 228 IGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW---AL 304 (395)
T ss_pred HHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH---HH
Confidence 77789999999999887765544 67778888899999875 5666777777777777777777665554443 24
Q ss_pred HHHHHHHHHhHHHHhhcccccc-hhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 404 VAFFSACTAFSLLLIYTLELFP-TCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
+.+++.+..++.....+....+ ++..+.-.|+.+.++++-..++|++.|.
T Consensus 305 llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~ 355 (395)
T COG2807 305 LLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGF 355 (395)
T ss_pred HHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhH
Confidence 5556667778887777776654 4455666778888888888899999983
No 103
>PRK10429 melibiose:sodium symporter; Provisional
Probab=99.85 E-value=7e-19 Score=175.82 Aligned_cols=323 Identities=13% Similarity=0.070 Sum_probs=204.8
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHh------HHHHHH
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFST------NMWIYS 165 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~------~~~~l~ 165 (509)
.+.+|+ +..++|.+..+..+--++..|+.|.++|| |+|| |+.++++.+..+++..++...+ .+..++
T Consensus 34 t~v~Gl---s~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~ 110 (473)
T PRK10429 34 TDVVGL---SVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVC 110 (473)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345688 55589999999999999999999999995 3799 6777778888888766664433 244566
Q ss_pred HHHHHHhhccchhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHHH-H----Hhc---CCcchHHHHHHHhhH
Q 040646 166 VLRFINGFGRATIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAIA-Y----INR---GSSWRRIYLYTSIPT 236 (509)
Q Consensus 166 ~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~~-~----~~~---~~~wr~~f~~~~~~~ 236 (509)
+..++.+++.....+...+++.|.. ++++|.+..++...+.++|..+.+.+. . +.. ..+|+....+.+++.
T Consensus 111 ~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~ 190 (473)
T PRK10429 111 VTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFF 190 (473)
T ss_pred HHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHH
Confidence 6677778888888888889999999 589999999987777777755554432 1 111 235777777777776
Q ss_pred HHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHH
Q 040646 237 ILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSA 316 (509)
Q Consensus 237 ~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 316 (509)
++..+...+..||.+.. ...+ .+++++.+.+..++.++++|.++..+..
T Consensus 191 ~~~~~~~~~~~~e~~~~----~~~~---------------------------~~~~~~~~~~~~~~~~~~n~~~~~ll~~ 239 (473)
T PRK10429 191 IVSTIITLRNVHEVYSS----DNQV---------------------------SAEGSHLTLKDIVALIYKNDQLSCLLGM 239 (473)
T ss_pred HHHHHHHHcCceecCCc----cccc---------------------------cccccCCCHHHHHHHHhcCHHHHHHHHH
Confidence 66555555556664210 0000 0000111122345566778776665555
Q ss_pred HHHHHHHHhHhhhccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH---h
Q 040646 317 IMVTGFGIGMVYYGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---M 390 (509)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~---~ 390 (509)
.++.+..........+++.+....+... ...+.++..+++.++.+++.||+|+|+.+..+..+.+++.+.+.. .
T Consensus 240 ~~~~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~ 319 (473)
T PRK10429 240 ALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLA 319 (473)
T ss_pred HHHHHHHHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5555444433332333444432222222 233344677888899999999999999988777765555444433 2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 391 GKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.....+..+...++.+++.+...+..+++.+|..+ .+..|...|.......+|..+++.+.+
T Consensus 320 ~~~~~~~~~i~~~l~g~~~~~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g 388 (473)
T PRK10429 320 APHNALLIVIAGILLNIGTALFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIG 388 (473)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333344445556666777888888855 233455778888877777777776665
No 104
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=99.85 E-value=1.9e-18 Score=166.47 Aligned_cols=320 Identities=16% Similarity=0.166 Sum_probs=222.1
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC-chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG-RKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G-rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
|..-++.|. +..|+|.+.+...+...++++++|.++|| ++ +|+.+.+..++.++........++++.+++.-++.
T Consensus 26 ~~~L~~~G~---s~~qIG~l~a~~~~~~i~~~~~~g~~aDr-~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~ 101 (400)
T PF03825_consen 26 PLYLESRGF---SGTQIGILLAVGPLARIVSPPFWGAIADR-FGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLF 101 (400)
T ss_pred HHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhH-hhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444456677 55699999999999999999999999999 76 57888888888888777777888999888888888
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH--HHHhcCC---cchHHHHHHHhhHHHHHHHhhee
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI--AYINRGS---SWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~--~~~~~~~---~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
.+......|...++..+... ++++-.|-.....++|..++... ..+.... +....+++.+...++.+ ...+.
T Consensus 102 ~~~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~-~~~l~ 178 (400)
T PF03825_consen 102 SFFFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLA-GFALF 178 (400)
T ss_pred HHHHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHH-HHHHh
Confidence 88877777877777777665 34555666667777776666433 2222222 22345566555554433 33456
Q ss_pred ecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646 247 VRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM 326 (509)
Q Consensus 247 ~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (509)
+|+.|+ +++.++ +.++....+..+++|+|.....++..++.......
T Consensus 179 lp~~~~----~~~~~~-----------------------------~~~~~~~~~~~~llk~~~~~~Fll~~~l~~~~~~~ 225 (400)
T PF03825_consen 179 LPKTPP----KRSAKE-----------------------------SVKKLLGLDALKLLKNPRFLVFLLAAFLIGISHAA 225 (400)
T ss_pred CCCCcc----ccccCC-----------------------------CcccccchHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 777652 000000 00111112345789999877777777777777777
Q ss_pred hhhccccccccCC-chHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHH-
Q 040646 327 VYYGMPLGLGSLS-FNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGL- 401 (509)
Q Consensus 327 ~~~~~~~~~~~~g-~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 401 (509)
.+...+.++++.| .+..... .+..+.+++.-...+++.+|+|.++++.++.+..++=..++.....+.+......
T Consensus 226 ~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~ 305 (400)
T PF03825_consen 226 YYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQL 305 (400)
T ss_pred HHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6666777888877 4433333 3444778888899999999999999999999999988888877533333222111
Q ss_pred --HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHH-HhHhhHHHHHHHH
Q 040646 402 --ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA-LVFGGVFSPVLVA 452 (509)
Q Consensus 402 --~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~-~~~g~~i~p~~~~ 452 (509)
.++-+...+..+.....++.+..|++.|++++++.+.. ..+|..++.++.|
T Consensus 306 l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG 359 (400)
T PF03825_consen 306 LGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGG 359 (400)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 12345556666777889999999999999999998775 4677777777776
No 105
>PRK09848 glucuronide transporter; Provisional
Probab=99.83 E-value=4.5e-18 Score=169.32 Aligned_cols=319 Identities=10% Similarity=0.045 Sum_probs=197.0
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCchHHH-HHHHHHHHHHHHHHHHHh-------HHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRKNML-FLSCLMMSVSCLLTIFST-------NMW 162 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr~~l-~~~~~~~~i~~~~~~~~~-------~~~ 162 (509)
-+++++|+ +..++|.+.+...+..++..++.|+++|| |+||||.. ..+.+...+.+++....+ ..+
T Consensus 34 y~~~~~gl---~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (448)
T PRK09848 34 YYTDVAGV---GAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVV 110 (448)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHH
Confidence 44566788 55589999999999999999999999999 24777644 556555554444432111 233
Q ss_pred HHHHHHHHHhhccchhhhhheeeeEeeccC-cccchhhhhhHHHHH-----HHHHHHHHHHHHhc-CC--cchHHHHHHH
Q 040646 163 IYSVLRFINGFGRATIGTCAIVLSTELVGK-KRRGQVGSIGFFCFT-----LGFLSLPAIAYINR-GS--SWRRIYLYTS 233 (509)
Q Consensus 163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~-----~G~~~~~~~~~~~~-~~--~wr~~f~~~~ 233 (509)
.+++..++.+++.+...+...++..+..++ ++|.+..++...+.+ +|..++|.++.... .. +|.....+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~ 190 (448)
T PRK09848 111 YAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLA 190 (448)
T ss_pred HHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHH
Confidence 445556677888888887777777776654 678887776655433 44555666643322 11 2222222333
Q ss_pred hhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHH
Q 040646 234 IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRR 313 (509)
Q Consensus 234 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 313 (509)
+++++..++.....||+++ + + .+++.....++.++++|.++..
T Consensus 191 v~~~~~~~~~~~~~~e~~~----~-~--------------------------------~~~~~~~~~~~~l~~n~~f~~~ 233 (448)
T PRK09848 191 IAGMVLYFICFKSTRENVV----R-I--------------------------------VAQPSLKISLQTLKRNRPLFML 233 (448)
T ss_pred HHHHHHHHHHHcCcEeccC----C-C--------------------------------ccCCCHHHHHHHHhCCchHHHH
Confidence 3333333333344555421 0 0 0001112346778899987766
Q ss_pred HHHHHHHHHHHhHhhhcccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646 314 LSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV 389 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~ 389 (509)
.+..++.+..........+++.++ .+.+....... ..++.+++.++.+++.||+|+|+.+..+.++..++.+.+.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~ 313 (448)
T PRK09848 234 CIGALCVLISTFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW 313 (448)
T ss_pred HHHHHHHHHHHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 666666655554444445655554 45444333221 13456778888999999999999999888887777666655
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchh-------hhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTC-------VRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.+....+......++.+++.+...+...++.+|..|.+ .+|...|+.+....+|..+++.+.+
T Consensus 314 ~~~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g 383 (448)
T PRK09848 314 VSVWSLPVALVALAIASIGQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPA 383 (448)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 43333333333334445566666677788888887643 4588889998888888888877765
No 106
>PRK11462 putative transporter; Provisional
Probab=99.83 E-value=5e-18 Score=168.42 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=191.2
Q ss_pred eeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCch-HHHHHHHHHHHHHHHHHHHHhH------HHHHHH
Q 040646 97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRK-NMLFLSCLMMSVSCLLTIFSTN------MWIYSV 166 (509)
Q Consensus 97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr-~~l~~~~~~~~i~~~~~~~~~~------~~~l~~ 166 (509)
+..|+ +...+|.+..+.-+--++..|+.|.++|| |+||| +.++++.+..+++.+++...++ ...+.+
T Consensus 38 ~~~Gl---~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~ 114 (460)
T PRK11462 38 DIFGI---PAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAI 114 (460)
T ss_pred HhhCC---CHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHH
Confidence 46677 44578888888888889999999999998 68985 5566677888888777655542 445666
Q ss_pred HHHHHhhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHHH-----HHhc---CCcchHHHHHHHhhHH
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAIA-----YINR---GSSWRRIYLYTSIPTI 237 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~~-----~~~~---~~~wr~~f~~~~~~~~ 237 (509)
.-++..++.......-.++..|..+ ++||++..++...+..+|..+++.+. .+.. ..+|+....+.+++.+
T Consensus 115 ~~~~~~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~ 194 (460)
T PRK11462 115 TYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAF 194 (460)
T ss_pred HHHHHHHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHH
Confidence 7777788888888888889999987 78999999999999998877766552 1211 1368887777777766
Q ss_pred HHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHH
Q 040646 238 LYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAI 317 (509)
Q Consensus 238 ~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (509)
+..++.....+|.++ .+ + ++.+.+..++.+++++.++......
T Consensus 195 i~~~i~~~~~kE~~~-----~~-~-------------------------------~~~~~~~~l~~~~~Nk~~~~l~~~~ 237 (460)
T PRK11462 195 MMLAFCFFTTKERVE-----AP-P-------------------------------TTTSMREDLRDIWQNDQWRIVGLLT 237 (460)
T ss_pred HHHHHHHhcceeccC-----CC-c-------------------------------cCCCHHHHHHHHhCChHHHHHHHHH
Confidence 655454444555321 00 0 0001123466778887765544333
Q ss_pred HHHHHHH----hHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc
Q 040646 318 MVTGFGI----GMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI 393 (509)
Q Consensus 318 ~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~ 393 (509)
++..... ....|...+..+... ..........+..+++.++++++.||+++|+....+..+..+..+++.+.+..
T Consensus 238 ~~~~~~~~~~~~~~~y~~~y~~g~~~-~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~ 316 (460)
T PRK11462 238 IFNILAVCVRGGAMMYYVTWILGTPE-VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQ 316 (460)
T ss_pred HHHHHHHHHHHhHhhhhhhhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchh
Confidence 3333322 222233333332211 11223334457778889999999999999988765544444433334343333
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhcccccc-----hhhh--hhHHHHHHHHHhHhhHHHHHHHH
Q 040646 394 WTSVEIGLELVAFFSACTAFSLLLIYTLELFP-----TCVR--NSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-----~~~r--~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.........++.+++.+...+..+++.+|..+ +..| |...+.......+|..+++.+.+
T Consensus 317 ~~~~~~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g 382 (460)
T PRK11462 317 ASITMFVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIG 382 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222333334444444555667777655 2233 34445555566666665555443
No 107
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.2e-17 Score=157.35 Aligned_cols=320 Identities=13% Similarity=0.108 Sum_probs=224.9
Q ss_pred eeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCc-hHHHHHHHHHHHHHHHHHHHHhH------HHHHHHH
Q 040646 98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGR-KNMLFLSCLMMSVSCLLTIFSTN------MWIYSVL 167 (509)
Q Consensus 98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Gr-r~~l~~~~~~~~i~~~~~~~~~~------~~~l~~~ 167 (509)
.+|+ +....|.+..+.-+--++..|+.|.++|| |+|| |+.++.+.+..++.+.++-.+++ ....++.
T Consensus 42 v~Gi---s~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vt 118 (467)
T COG2211 42 VFGL---SAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVT 118 (467)
T ss_pred ccCC---cHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHH
Confidence 4566 44467777777777788999999999998 6998 67778888999999999888873 4566777
Q ss_pred HHHHhhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHH-----HHHHhc---CCcchHHHHHHHhhHHH
Q 040646 168 RFINGFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPA-----IAYINR---GSSWRRIYLYTSIPTIL 238 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~-----~~~~~~---~~~wr~~f~~~~~~~~~ 238 (509)
..+.+++.......-.++.+|..+ ++||.+..++.+.+.++|.++... +..+.+ ..||+..-.+.+++..+
T Consensus 119 Y~l~~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i 198 (467)
T COG2211 119 YMLLGLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVI 198 (467)
T ss_pred HHHHHHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHH
Confidence 888899999988888999999986 689999999999999988655433 333333 35888888888888887
Q ss_pred HHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHH
Q 040646 239 YCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIM 318 (509)
Q Consensus 239 ~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (509)
..+.+++..+|.+. +.+. .++..+.+....+..+++|+.++......+
T Consensus 199 ~~l~~~~~v~ER~~----~~~~----------------------------~~~~~~~~~~~~~~~~~~Nrp~~~~l~~~l 246 (467)
T COG2211 199 LLLFCFFNVKERVV----ETQP----------------------------TKTGVKLKLKDSFLLIFKNRPLLLLLLMNL 246 (467)
T ss_pred HHHHHHHHhhcccC----cccc----------------------------CcccccccHHHHHHHHHccchHHHHHHHHH
Confidence 77677776666432 0000 000011122224556788888666655444
Q ss_pred HHHHHHhH----hhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646 319 VTGFGIGM----VYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW 394 (509)
Q Consensus 319 ~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
+.+.+.+. ..|+..+.+......+...........+++.++..++.+|+|+|++..++.++.+++.+.+.+.+.++
T Consensus 247 ~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~~~ 326 (467)
T COG2211 247 LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPAGS 326 (467)
T ss_pred HHHHHHHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 44443333 33444444444333344444555566677789999999999999999999999999999999887655
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcccccc-------hhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 395 TSVEIGLELVAFFSACTAFSLLLIYTLELFP-------TCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
....+...++..++.+...+..|++.+|..+ .+..|...+....+.-+|..++..+.+
T Consensus 327 ~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g 391 (467)
T COG2211 327 VVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPG 391 (467)
T ss_pred hHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555567777778888899999999864 233456667777776666665555444
No 108
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=99.83 E-value=2.4e-19 Score=154.69 Aligned_cols=352 Identities=11% Similarity=0.011 Sum_probs=207.4
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHH
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI---FSTNMWIYSVLRF 169 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~---~~~~~~~l~~~r~ 169 (509)
...+.|.++ +..+..++.+.|+....+..+++|++.||++|-|..-++-+....++.++++ ..+.+|+++++|+
T Consensus 68 ~~fk~d~ni---~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF 144 (459)
T KOG4686|consen 68 IDFKLDSNI---EYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRF 144 (459)
T ss_pred hhhhccccc---ceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhe
Confidence 344445555 3448899999999999999999999999999998877776666677777765 4688999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhc----CC---cchH--HHHHHHhhHHHH
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR----GS---SWRR--IYLYTSIPTILY 239 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~----~~---~wr~--~f~~~~~~~~~~ 239 (509)
+.|+|.-...++...|..-|+..|+.+.++|+.....-+|..+-..+ .++.+ .+ |-.. ..+..+......
T Consensus 145 ~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~ 224 (459)
T KOG4686|consen 145 LFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQ 224 (459)
T ss_pred eeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 99999888888999999999999999999999988888886543222 22211 11 1100 001111111111
Q ss_pred HHHhheeecCchHHHHhcCC-HHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHH
Q 040646 240 CILVRFLVRESPRWLFIQGR-KEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIM 318 (509)
Q Consensus 240 ~~~~~~~~~esp~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 318 (509)
.+... ...+- .+.+++.+.+. ++......+..+ . .-+ .|.+|....++.
T Consensus 225 slica----------l~lg~~D~rAerilh~e---~g~~Ge~pkLtd---------------v-~~f-~ppfw~~~iicv 274 (459)
T KOG4686|consen 225 SLICA----------LSLGLSDDRAERILHLE---EGFLGEEPKLTD---------------V-NTF-YPPFWVLVIICV 274 (459)
T ss_pred HHHHH----------HHhhhhhhHHHHHHhhh---cCcccCCccccc---------------c-ccc-CccHHHHHHHHH
Confidence 11110 01111 11222222111 110000000000 0 011 233344444333
Q ss_pred HHHHHHh-HhhhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646 319 VTGFGIG-MVYYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW 394 (509)
Q Consensus 319 ~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
..+.... +..-+..++.+.+|+++..+..+.+ ....+.+.+.|.++||.|++...+.+..+..+..-...++...+
T Consensus 275 ~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~ls 354 (459)
T KOG4686|consen 275 LYYVAWFPFITLGPMFFQKRFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTFLS 354 (459)
T ss_pred HHHHHHHHHhhhhHHHHHHhhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhhcc
Confidence 3333222 1122223455668888766554444 44556677889999999999887766655554433333322222
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc--c----chhHHHHHHHH
Q 040646 395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ--N----NFLSYGIFGLV 468 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~--~----~~~~~~~~~~~ 468 (509)
++..+ .+.+..........|..++.+.|.++-|++.|+.+.+.++|-.+.|++.+.... + ....+.+++.+
T Consensus 355 Py~~m---~~lGLsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~ 431 (459)
T KOG4686|consen 355 PYTSM---TFLGLSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLM 431 (459)
T ss_pred HHHHH---HHHhhhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHH
Confidence 33222 222233334445577888889999999999999999999999999999983221 1 12234444455
Q ss_pred HHHHHHHHhhcc
Q 040646 469 IGLCGLFVIGLP 480 (509)
Q Consensus 469 ~~~~~~~~~~~~ 480 (509)
++.+..+.+.+.
T Consensus 432 aL~svgil~~~N 443 (459)
T KOG4686|consen 432 ALTSVGILFYLN 443 (459)
T ss_pred HHHHHHHHhhee
Confidence 554444444443
No 109
>PF13347 MFS_2: MFS/sugar transport protein
Probab=99.82 E-value=9.4e-19 Score=173.00 Aligned_cols=322 Identities=13% Similarity=0.127 Sum_probs=229.1
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCch-HHHHHHHHHHHHHHHHHHHH-h-------HH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRK-NMLFLSCLMMSVSCLLTIFS-T-------NM 161 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr-~~l~~~~~~~~i~~~~~~~~-~-------~~ 161 (509)
-..+.+|+ +....|.+..+..+-.++..|+.|.++|| |+||| +.++++..+.+++.+++... + ..
T Consensus 27 f~~~~~gl---~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~ 103 (428)
T PF13347_consen 27 FYTDVLGL---SPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKL 103 (428)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhhHH
Confidence 34456688 55588999999999999999999999994 49975 45567888888888877765 4 23
Q ss_pred HHHHHHHHHHhhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHH-HHH----hcC---CcchHHHHHH
Q 040646 162 WIYSVLRFINGFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAI-AYI----NRG---SSWRRIYLYT 232 (509)
Q Consensus 162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~-~~~----~~~---~~wr~~f~~~ 232 (509)
..+.+..++..++.........++..|..+ +++|.+..++...+..+|.++...+ ..+ ... .+|++...+.
T Consensus 104 ~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~ 183 (428)
T PF13347_consen 104 VWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVL 183 (428)
T ss_pred HHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHH
Confidence 456777777899999999999999999998 5789999999988888888655444 222 222 2799999999
Q ss_pred HhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHH
Q 040646 233 SIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALR 312 (509)
Q Consensus 233 ~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 312 (509)
+++.++..++..+..+|.++ +.+ +++++.+....+++++++|.++.
T Consensus 184 ~iv~~v~~~i~~~~~ke~~~------~~~----------------------------~~~~~~~~~~~~~~~~~nr~~~~ 229 (428)
T PF13347_consen 184 AIVGLVFFLITFFFVKERSV------EVT----------------------------EQEKKISLRDSLRSLFRNRPFRI 229 (428)
T ss_pred HHHHHHHhhhhhheeeeccc------ccc----------------------------ccccccccccchhhhcccchHHH
Confidence 99988877777777777211 000 00111122235778888888777
Q ss_pred HHHHHHHHHHHHhHhhhcccccccc-CCch--HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646 313 RLSAIMVTGFGIGMVYYGMPLGLGS-LSFN--LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV 389 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~--~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~ 389 (509)
.....++.++.........+++.+. .+.+ .........+..+++.++.++++||+|+|+.+..+..+.+++.+++.+
T Consensus 230 l~~~~~~~~~~~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~ 309 (428)
T PF13347_consen 230 LLLAFFLQWLAFALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFF 309 (428)
T ss_pred HHHHHHHHHhhhhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHH
Confidence 6666666665554433333333332 2222 223334456778889999999999999999999999999998888887
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch-------hhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT-------CVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-------~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.+..+.+...+...+.+++.+..+...+++.+|..+. +..|...|+.+....++..+++.+.+
T Consensus 310 ~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g 379 (428)
T PF13347_consen 310 LGPGSPWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVG 379 (428)
T ss_pred HHhhhHHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHH
Confidence 6644555555666666677777778888999998763 33477788888887777777766655
No 110
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=99.80 E-value=7.8e-17 Score=157.84 Aligned_cols=346 Identities=10% Similarity=0.002 Sum_probs=194.7
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHhh
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRFINGF 173 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~ 173 (509)
.+++|+ +..+.+.+.+.+.....++.+++|+++|| + ||||+++++.++.+++.++.+..+ +...+.+...+.++
T Consensus 37 ~~~lgl---s~~~a~~i~~~~~~~~~l~~ligG~LaDR-ilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~i 112 (493)
T PRK15462 37 TNQLKY---DDNHAYELFSAYCSLVYVTPILGGFLADK-VLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVC 112 (493)
T ss_pred HHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 446788 44478899999999999999999999999 9 999999999999999988776543 22334444445556
Q ss_pred ccchhhhhheeeeEeeccCc--ccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 174 GRATIGTCAIVLSTELVGKK--RRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 174 ~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|.|...+...++++|.+|++ +|..++++...+.++|..++|.+ +++.+..|||+.|.+.++..++ +++.+...++.
T Consensus 113 G~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l-~li~~~~~~~~ 191 (493)
T PRK15462 113 GYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA-GLVIFLCGNRH 191 (493)
T ss_pred hcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH-HHHHHHHhhhh
Confidence 66776777788899999875 79999999999999999999999 6777788999999987654433 32322221110
Q ss_pred hHHH-H-hcCCHHHHHHHHH-------------HHHhhcCCccccccccCcccccccccccchhHHHHHH---hchHHHH
Q 040646 251 PRWL-F-IQGRKEEAVSIIK-------------SISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILV---EKKWALR 312 (509)
Q Consensus 251 p~~~-~-~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~ 312 (509)
.... . .+...++...... -.....- ..+.......... -....-+..+. .++.-++
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~er~ 265 (493)
T PRK15462 192 FTHTRGVNKKVLRATNFLLPNWGWLLVLLVATPALITVLF----WKEWSVYALIVAT--IIGLGVLAKIYRKAENQKQRK 265 (493)
T ss_pred hccCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH--HHHHHHHHHHHHhcCCHHHHh
Confidence 0000 0 0000000000000 0000000 0000000000000 00000000000 0000111
Q ss_pred HHH-------HHHHHHHHHhHhhhcccccccc------CC--chHHHHHHHHHhhhhhHHHHHHHHhhhcCc--hh----
Q 040646 313 RLS-------AIMVTGFGIGMVYYGMPLGLGS------LS--FNLYLSVTFNALSELPASLITFFLIGKLKR--KS---- 371 (509)
Q Consensus 313 ~~~-------~~~~~~~~~~~~~~~~~~~~~~------~g--~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr--~~---- 371 (509)
++. ...++|.........+.++.++ .| .++.....+..+..++.+++.+++-.|..| |.
T Consensus 266 r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~ 345 (493)
T PRK15462 266 ELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIW 345 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcH
Confidence 111 1112222211111112222211 23 345555666666666666665555555522 21
Q ss_pred -HHHHHHHHHHHHHHHHHHh----cc---chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hH
Q 040646 372 -SLLGFTIMSGVCSVLCVVM----GK---IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VF 442 (509)
Q Consensus 372 -~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~ 442 (509)
-..+++++.+++.+++.+. .. .+.++.+...++...+.....|+..++++++.|++.++..+|...... .+
T Consensus 346 ~Kfa~g~~~~g~~f~~l~~~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~ 425 (493)
T PRK15462 346 GKFALGLGLMSAGFCILTLSARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAI 425 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 2456677777776655431 11 123444444455556666777899999999999999999999987744 67
Q ss_pred hhHHHHHHHH
Q 040646 443 GGVFSPVLVA 452 (509)
Q Consensus 443 g~~i~p~~~~ 452 (509)
|+.++..+.+
T Consensus 426 ~~~~~g~~~~ 435 (493)
T PRK15462 426 ANYLAGVIAD 435 (493)
T ss_pred HHHHHHHHHH
Confidence 7777777665
No 111
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=99.80 E-value=5.2e-17 Score=149.80 Aligned_cols=345 Identities=15% Similarity=0.078 Sum_probs=239.4
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchH-HHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHhhccchhhh
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKN-MLFLSCLMMSVSCLLTIFSTN---MWIYSVLRFINGFGRATIGT 180 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~-~l~~~~~~~~i~~~~~~~~~~---~~~l~~~r~l~G~~~g~~~~ 180 (509)
++..++...++..+..++.+|+.|.++|+ .|+|| .+-....+..++..+..++++ ++..++...+..++.....+
T Consensus 56 ~~a~~gy~~aia~llia~LapiLG~iaD~-~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~V 134 (438)
T COG2270 56 STAYWGYASAIAGLLIALLAPILGTIADY-PGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNV 134 (438)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhcc-CCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhhe
Confidence 34578888999999999999999999999 88655 455555566666666777665 44555667888899888889
Q ss_pred hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH--H-Hh----------------cCCcchHHHHHHHhhHHHHHH
Q 040646 181 CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA--Y-IN----------------RGSSWRRIYLYTSIPTILYCI 241 (509)
Q Consensus 181 ~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~--~-~~----------------~~~~wr~~f~~~~~~~~~~~~ 241 (509)
.-.+++.+..++++-++..++-.....+|..+.-++. . .. +...-|..+.+.++..++..+
T Consensus 135 fyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~i 214 (438)
T COG2270 135 FYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFAL 214 (438)
T ss_pred ehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHh
Confidence 9999999999998888888877777777766544432 1 11 223468889999998888888
Q ss_pred HhheeecCchHHHHhcCCH-HHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646 242 LVRFLVRESPRWLFIQGRK-EEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVT 320 (509)
Q Consensus 242 ~~~~~~~esp~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (509)
..++..||.++- +... .......+++ +.+++++.+++.....++..++.
T Consensus 215 Pm~~~v~~~~~~---~~~~~~~l~~g~k~L---------------------------~~t~k~i~~~~~i~~FLiA~~~~ 264 (438)
T COG2270 215 PMILNVHDAEKI---SSPPPTALRNGFKEL---------------------------KSTFKEIRGRKNLVLFLIARFFY 264 (438)
T ss_pred HHHhcccccccc---cccchHHHHHHHHHH---------------------------HHHHHHHhcccchHHHHHHHHHH
Confidence 888888876531 0011 1111112222 23577777777655555555544
Q ss_pred HHHHhH-hhhccccccccCCchHHH---HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhH
Q 040646 321 GFGIGM-VYYGMPLGLGSLSFNLYL---SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS 396 (509)
Q Consensus 321 ~~~~~~-~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
.-+.+. ..+...+-..++|.+... ......+..++|+++.|++.||+|.|+++..+.++..+.++...+... ..
T Consensus 265 ~DGv~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~--~~ 342 (438)
T COG2270 265 IDGVNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEG--EL 342 (438)
T ss_pred HhhHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccc--cH
Confidence 444333 333333444467776544 445566888999999999999999999998888887777666666433 33
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHHHHHHHHHHHHH
Q 040646 397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSYGIFGLVIGLCG 473 (509)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~~~~~~~~~~~~ 473 (509)
....+.++.+...+..++..-++..+..|+++.++.+|+++..+...++++|++.+.. .......+..+.++..++.
T Consensus 343 ~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl 422 (438)
T COG2270 343 DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGL 422 (438)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhH
Confidence 3344445556667788889999999999999999999999999999999999999832 2233344445555555555
Q ss_pred HHHhhccCC
Q 040646 474 LFVIGLPET 482 (509)
Q Consensus 474 ~~~~~~~~~ 482 (509)
+..+..|..
T Consensus 423 ~~L~~v~~~ 431 (438)
T COG2270 423 LLLLRVKVP 431 (438)
T ss_pred hhEEeecCC
Confidence 555555544
No 112
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=99.78 E-value=5.3e-17 Score=153.32 Aligned_cols=353 Identities=13% Similarity=0.057 Sum_probs=206.4
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHH--HHHHH-HHHHHh----HHH-HHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMM--SVSCL-LTIFST----NMW-IYS 165 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~--~i~~~-~~~~~~----~~~-~l~ 165 (509)
-+.++-|+ +..+.|.+.++..+...+.+|+.|.++|| +|.||-++...... ..+.. ...+.| |++ ..+
T Consensus 33 WL~~~~GL---s~~~iG~i~s~~~~~~l~~qp~~G~i~Dk-lg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~i 108 (412)
T PF01306_consen 33 WLTQVAGL---SGTEIGIIFSAGSLFALLAQPVYGFISDK-LGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAI 108 (412)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHTHHHHHHHHHH-CTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHH
T ss_pred HHccccCC---CHHHHHHHHHHHHHHHHHHHHhHHHhcch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445788 55589999999999999999999999999 99766554433222 11222 222222 322 233
Q ss_pred HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646 166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 244 (509)
++-+..|+......|+.-+++.++. ++.+.-.|-..+..++|.+++..+ |.+.+ .+-+..|++....+++..++..
T Consensus 109 ig~i~l~~~f~~~~~~~Ea~~er~s--r~~~feYG~~R~wGSig~ai~s~~~G~L~~-i~p~~~fwi~s~~~~il~lll~ 185 (412)
T PF01306_consen 109 IGGIYLGLVFNAGVPLSEAYAERVS--RRNGFEYGRARMWGSIGFAIASLLAGILFN-INPNIIFWIASAAAIILLLLLL 185 (412)
T ss_dssp HTTTTTTTTTTTHHHHHHHHHHHHH--HHHSS-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccchHHHHHHHHHH--HHhcCCcchHHHHhhHHHHHHHHHhheeee-eCccHHHHHHHHHHHHHHHHHH
Confidence 3334445555555566555555544 233445566677788888887777 44443 4557778877766666554544
Q ss_pred eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHH
Q 040646 245 FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGI 324 (509)
Q Consensus 245 ~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 324 (509)
...|+.++.. + . . +.+..++++.+.+...+++|+|++|...+.........
T Consensus 186 ~~~~~~~~~~----~-------------------~-~-----~~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~Y 236 (412)
T PF01306_consen 186 LLKPDVPPQA----E-------------------V-A-----DALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAIY 236 (412)
T ss_dssp SS---SSSSS------------------------S-S-----TTSSS------HHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HcCCcCchhh----h-------------------h-h-----cccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 4444432100 0 0 0 00000111112234678888998777666555544433
Q ss_pred hHhhhccc----cccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHH
Q 040646 325 GMVYYGMP----LGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSV 397 (509)
Q Consensus 325 ~~~~~~~~----~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (509)
.......+ .+.++.+.+....+ .+..+.+++...+..++.+|+|.|+.++++..++.+=.+...+. ++++.
T Consensus 237 ~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~--~~~~~ 314 (412)
T PF01306_consen 237 DVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFA--TNPWV 314 (412)
T ss_dssp HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----SHHH
T ss_pred HHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhh--cchHH
Confidence 33222222 22333333333333 33336778888899999999999999999999999888877774 34455
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHH-HHHHhHhhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHH
Q 040646 398 EIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMV-RQALVFGGVFSPVLVAAGRQ--NNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~~~~~~--~~~~~~~~~~~~~~~~~~ 474 (509)
....-.+-++-.........-|+.+.+|++..++...+. +....+|..+.+.+.|...+ +....+.+.+.+.+...+
T Consensus 315 i~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~l 394 (412)
T PF01306_consen 315 ISLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTL 394 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHH
Confidence 555556666666566667788999999999988988886 45668888888888884333 334567777777665555
Q ss_pred HH-hhccCCCC
Q 040646 475 FV-IGLPETRD 484 (509)
Q Consensus 475 ~~-~~~~~~~~ 484 (509)
+. +.+++.++
T Consensus 395 i~~f~l~~~~~ 405 (412)
T PF01306_consen 395 ISAFTLKKDKK 405 (412)
T ss_dssp HHHHHS--SSS
T ss_pred HheeeecCCCc
Confidence 54 45554443
No 113
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=99.72 E-value=2.1e-15 Score=141.47 Aligned_cols=258 Identities=10% Similarity=-0.009 Sum_probs=169.1
Q ss_pred HHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC------------
Q 040646 156 IFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG------------ 222 (509)
Q Consensus 156 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~------------ 222 (509)
+...+|+.++++-++.|.|.+...+....++++..+++++.+.+++.+...++|..++|++ +.+...
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~ 84 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA 84 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence 3557899999999999999999999999999999999999999999999999999999999 444421
Q ss_pred ----CcchHHHHHHHhhHHHHHHHh-heeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccc
Q 040646 223 ----SSWRRIYLYTSIPTILYCILV-RFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDL 297 (509)
Q Consensus 223 ----~~wr~~f~~~~~~~~~~~~~~-~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (509)
.+|+++|++.+.+.++..++. +.-+||.++ +.++. .+ +++.
T Consensus 85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~~----------~~---------------~~~~--- 130 (310)
T TIGR01272 85 NAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVAR----------VS---------------SGDT--- 130 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------ccccc----------cc---------------cccc---
Confidence 369999997766655544332 222344210 00000 00 0000
Q ss_pred hhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc---CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchh
Q 040646 298 YSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS---LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKS 371 (509)
Q Consensus 298 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~ 371 (509)
...++.+++|..+...+..++..........+.+.++.+ .|.+.... ......+.++|+++++++.||+|+|+
T Consensus 131 -~~~~~~~~~~~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~ 209 (310)
T TIGR01272 131 -TQKTSAFQFTHLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGR 209 (310)
T ss_pred -cchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 011234555554443333333322333333334444432 46654443 34445778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 372 SLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
.+..+..+.+++.++...... ..... ...+.+++.+..+|...+...+..|++ .+++.++. ..+.+|+.+.|.+.
T Consensus 210 ~l~~~~~l~~~~~~l~~~~~~--~~~~~-~~~l~g~~~s~i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~ 284 (310)
T TIGR01272 210 YLAFNAFLAVLLSIGAALTHG--YVAMW-FVLALGLFNSIMFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQ 284 (310)
T ss_pred HHHHHHHHHHHHHHHHHHcCC--HHHHH-HHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHH
Confidence 888777777666554444322 22222 233455777788898888888888764 45666664 56789999999988
Q ss_pred Hh
Q 040646 452 AA 453 (509)
Q Consensus 452 ~~ 453 (509)
|.
T Consensus 285 G~ 286 (310)
T TIGR01272 285 GS 286 (310)
T ss_pred HH
Confidence 83
No 114
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=99.71 E-value=3.3e-16 Score=145.21 Aligned_cols=314 Identities=10% Similarity=0.049 Sum_probs=203.5
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh------HHH--HHHHHHHHHhhccchhh
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST------NMW--IYSVLRFINGFGRATIG 179 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~------~~~--~l~~~r~l~G~~~g~~~ 179 (509)
..-|+.-+|++.+....+++-|+.|+ +|-|...+++..+.++|+.+-..+. .++ ....+..+.+.+.-...
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk-~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim 158 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDK-FGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFIL 158 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcc-cchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhh
Confidence 46788999999999999999999999 9999999999999999999977653 345 77788999999988877
Q ss_pred hhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc------CCcchH--HHHHHHhhHHHHHHHhheeecCc
Q 040646 180 TCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR------GSSWRR--IYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 180 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~------~~~wr~--~f~~~~~~~~~~~~~~~~~~~es 250 (509)
........-|+++++|..+..+-.++..+|.+++.++. .+.. +..|-. .|+..+.++.+..++..+..++.
T Consensus 159 ~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~ 238 (480)
T KOG2563|consen 159 GLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKK 238 (480)
T ss_pred ccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 77778888999999999999998888888888888874 3333 235654 35544554444344444555554
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
|+.- +..+.... .+.+-..+.++.++++.+....+...+.....+..+..
T Consensus 239 P~tP-----ps~s~~~~-------------------------~~~~f~~si~~~~~n~~F~il~~~ygi~~g~F~~l~~~ 288 (480)
T KOG2563|consen 239 PPTP-----PSASQAAL-------------------------QDASFPKSIKSCFKNRQFIILAICYGIGLGLFNSLSTL 288 (480)
T ss_pred CCCC-----CchhHhhh-------------------------hcCcHHHHHHHHHcCccHHHHHHHHhhhHHHHHHHHHH
Confidence 4210 00000000 00112346888999887544443333333333333333
Q ss_pred cccccccCCc---hHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHH-HHHHHHHHHHHHHHHhc--cchhHHHHHHHHH
Q 040646 331 MPLGLGSLSF---NLYLSVTFNALSELPASLITFFLIGKLKRKSSLL-GFTIMSGVCSVLCVVMG--KIWTSVEIGLELV 404 (509)
Q Consensus 331 ~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 404 (509)
+...+...|. .......+..+++++++++.|.+.||.+.-+... +......++.+.+.... ....+.......+
T Consensus 289 l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t~~~ 368 (480)
T KOG2563|consen 289 LNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTTCGL 368 (480)
T ss_pred hhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhhHHH
Confidence 3322222233 3455666777889999999999999988655433 33333333322222211 1112222233334
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.+++....+|+..-+..|..-|..-++..|+.+..+.+-+++-.++.+
T Consensus 369 ~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~ 416 (480)
T KOG2563|consen 369 LGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMG 416 (480)
T ss_pred HHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHH
Confidence 444555666777788888866666788899998888877777777766
No 115
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=99.61 E-value=2.5e-12 Score=119.63 Aligned_cols=321 Identities=14% Similarity=0.126 Sum_probs=201.9
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC-----chH-HHHHHHHHHHHHHHHHHHH-----h----
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG-----RKN-MLFLSCLMMSVSCLLTIFS-----T---- 159 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G-----rr~-~l~~~~~~~~i~~~~~~~~-----~---- 159 (509)
+..|+++ .....+.+.+...+... ..+.+|+.+|+ .+ ||. .+..|.++...+..+..++ .
T Consensus 6 MIvEL~v---pA~lv~~lval~~~~ap-~R~~~G~~SD~-~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~ 80 (403)
T PF03209_consen 6 MIVELGV---PAWLVALLVALHYLVAP-LRVWFGHRSDT-HPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQ 80 (403)
T ss_pred HHHHhcc---HHHHHHHHHHHHHHHHH-HHHHhcccccc-CcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 4557777 55567777777766544 57899999999 77 664 4555677766666665543 2
Q ss_pred ---H--HH--HHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHH
Q 040646 160 ---N--MW--IYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLY 231 (509)
Q Consensus 160 ---~--~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~ 231 (509)
+ .+ ...+...+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++..+ +.++++++-....-+
T Consensus 81 ~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v 160 (403)
T PF03209_consen 81 SSGPFWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV 160 (403)
T ss_pred cccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 1 12 444566788999999999999999999999999999999999999999999988 777777654333222
Q ss_pred HH---hhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhch
Q 040646 232 TS---IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKK 308 (509)
Q Consensus 232 ~~---~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 308 (509)
.. ++.+++.++. .+-.|.+. .+. . ...++++++....++++..+|
T Consensus 161 ~~~~a~i~~~l~~ia-~wg~E~r~-------~~~---------------~---------~~~~~~~~~f~~a~~~~~~~~ 208 (403)
T PF03209_consen 161 IQGVALIALLLNLIA-LWGQEPRR-------SRR---------------A---------AAAERPRPPFREAWRQVWASP 208 (403)
T ss_pred HHHHHHHHHHHHHHH-HHhcccCC-------ccc---------------c---------cCCCCCCccHHHHHHHHHhCC
Confidence 22 2222222221 22223210 000 0 011122223334677788888
Q ss_pred HHHHHHHHHHHHHHHHhHhhhcc-ccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhh-hcCchhHHHHHHHHHHHH
Q 040646 309 WALRRLSAIMVTGFGIGMVYYGM-PLGLGSLSFNLYLSV---TFNALSELPASLITFFLIG-KLKRKSSLLGFTIMSGVC 383 (509)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~d-r~gr~~~~~~~~~~~~~~ 383 (509)
..++.+...++..+..+..--.+ |+--+.+|.++.... .+.+.+.++|..+.+++.. |.++++...+++....++
T Consensus 209 ~a~~f~~fl~l~t~a~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~ 288 (403)
T PF03209_consen 209 QARRFFVFLFLGTLAFFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALA 288 (403)
T ss_pred ChhHHHHHHHHHHHHHHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 87777666666655554443333 555555677765544 4455777888888887665 677888877888877777
Q ss_pred HHHHHHhcc-chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHh----HhhHHHHHHHH
Q 040646 384 SVLCVVMGK-IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALV----FGGVFSPVLVA 452 (509)
Q Consensus 384 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~----~g~~i~p~~~~ 452 (509)
+.++..... .+.+......++.+++.+.......+...+..++++.|..+|.-..... +|.+++..+.+
T Consensus 289 f~lii~a~~~~~~~~~~~~~~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D 362 (403)
T PF03209_consen 289 FALIILAGPLGSPWLFRPGVFLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRD 362 (403)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555322 2233333333444455555444556677788888888998888776664 44445554444
No 116
>PRK10642 proline/glycine betaine transporter; Provisional
Probab=99.58 E-value=9.5e-15 Score=146.93 Aligned_cols=170 Identities=12% Similarity=0.047 Sum_probs=124.5
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHh
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLL---TIFSTNMWIYSVLRFING 172 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~l~~~r~l~G 172 (509)
++++|.+. .+.++..+...++..++.++.|+++|| +|||+++..+.++..++.+. ...+++...++++|++.|
T Consensus 278 ~~~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 353 (490)
T PRK10642 278 SHNLHYSE---DHGVLIIIAIMIGMLFVQPVMGLLSDR-FGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLA 353 (490)
T ss_pred HHhcCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35567633 345677788889999999999999999 99999988877654443332 223345778888999999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHHHHHHhheeecC
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
++.+........++.|.+|++.|++++++ ++.+. ++..++|.+ +++.+.. +|+.++++..+++++.. +..+++||
T Consensus 354 ~~~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~-~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~-~~~~~~pe 431 (490)
T PRK10642 354 VILNCFTGVMASTLPAMFPTHIRYSALAAAFNISV-LVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGL-ITGVTMKE 431 (490)
T ss_pred HHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HHHHHhcc
Confidence 88777777777888899999999999997 45544 444556665 6665543 57877776666666544 34456799
Q ss_pred chHHHHhc-----CCHHHHHHHHHHHH
Q 040646 250 SPRWLFIQ-----GRKEEAVSIIKSIS 271 (509)
Q Consensus 250 sp~~~~~~-----~~~~~~~~~~~~~~ 271 (509)
+|+|+.++ ++.+|+.+.+.+++
T Consensus 432 s~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 432 TANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred ccCCCCCCccccccchhhHHHHhhccc
Confidence 99987754 88888888888775
No 117
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=99.58 E-value=4.4e-15 Score=122.54 Aligned_cols=137 Identities=24% Similarity=0.391 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG 191 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 191 (509)
..+.+.++..+++++.|++.|| +|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.|.+|
T Consensus 3 ~~~~~~~~~~~~~~~~g~~~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 81 (141)
T TIGR00880 3 LLAGYALGQLIYSPLSGLLTDR-FGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYP 81 (141)
T ss_pred EEEeehhHHHHHHhhHHHHHhh-cchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCC
Confidence 4456678889999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 192 KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 192 ~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
+++|++..++.+....+|..+++.+ +.+.+..+|++.+++.++..++..+...+..||
T Consensus 82 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 82 PEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 9999999999999999999999998 567777899999999888777766565555565
No 118
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=99.56 E-value=4.1e-14 Score=135.48 Aligned_cols=146 Identities=19% Similarity=0.233 Sum_probs=119.1
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCc-hHHHHHHHHHHHHHHHHH-HHH---h-HHHHHHHHHHHHhhccchh
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGR-KNMLFLSCLMMSVSCLLT-IFS---T-NMWIYSVLRFINGFGRATI 178 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Gr-r~~l~~~~~~~~i~~~~~-~~~---~-~~~~l~~~r~l~G~~~g~~ 178 (509)
+....|++.++..+|.+++++.+|.+..| .|. |+.++.+.++..+++++. ++. + ..+.++++|++.|+|.| .
T Consensus 69 ~~~ffG~viaa~slg~~i~~liF~~Ws~k-~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~-n 146 (488)
T KOG2325|consen 69 TATFFGLVIAASSLGHAIFSLIFGIWSNK-TGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVG-N 146 (488)
T ss_pred CcchhhHHHHHHHHHHHhcchhhcccccc-cCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcc-c
Confidence 34478999999999999999999999999 776 888999999999999998 332 2 57899999999999976 4
Q ss_pred hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc---CCc-----------chHHHHHHHhhHHHHHHHhh
Q 040646 179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR---GSS-----------WRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~-----------wr~~f~~~~~~~~~~~~~~~ 244 (509)
.....+|+++....++|.++++....+..+|..+||.++.... ..| +..+-|+.++..++..++..
T Consensus 147 ~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 147 FAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred HHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHH
Confidence 6777899999988999999999999988999999988853221 111 24566778888888777777
Q ss_pred eeecCchH
Q 040646 245 FLVRESPR 252 (509)
Q Consensus 245 ~~~~esp~ 252 (509)
++++|.++
T Consensus 227 ~~f~E~~~ 234 (488)
T KOG2325|consen 227 FFFKEVYR 234 (488)
T ss_pred hheeeccc
Confidence 88888753
No 119
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=99.55 E-value=6.8e-13 Score=125.74 Aligned_cols=368 Identities=14% Similarity=0.054 Sum_probs=212.8
Q ss_pred eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccc
Q 040646 99 WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRA 176 (509)
Q Consensus 99 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g 176 (509)
+|.+ +.+..-+.+.|..-.-+...++|+++||-+|+|+++.+|.++..+|.++.+.+. +...+.++-.+.++|.|
T Consensus 56 Lg~~---~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~G 132 (498)
T COG3104 56 LGFD---ETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTG 132 (498)
T ss_pred CCcC---hHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccc
Confidence 5673 334555666666666667789999999988999999999999999999999884 78889999999999999
Q ss_pred hhhhhheeeeEeeccCc--ccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC----
Q 040646 177 TIGTCAIVLSTELVGKK--RRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE---- 249 (509)
Q Consensus 177 ~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e---- 249 (509)
..=+...+++.|.+|++ +|-..++++.++.++|.+++|++ +++..+.||...|...++-..+.. +.+...+.
T Consensus 133 l~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl-~~f~~~~r~~~~ 211 (498)
T COG3104 133 LFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGL-VIFLLGRRHVKG 211 (498)
T ss_pred cccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH-HHHHHccchhcC
Confidence 99999999999999854 47788999999999999999999 788899999999998877666533 32232221
Q ss_pred ch-----HHHHhcCCHHHHHHHHHHHHhh-----cCCccccccccCcccccccccccchhHHHHHHhch---HHHH----
Q 040646 250 SP-----RWLFIQGRKEEAVSIIKSISTS-----ENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKK---WALR---- 312 (509)
Q Consensus 250 sp-----~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~---- 312 (509)
++ .-+..+................ .+.+............. ...-..+.++++ .-++
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~------~~~~~~~~~~~~~~~~er~r~~~ 285 (498)
T COG3104 212 IGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLVISILI------AIIYFAEAFRSPKVFDERRRLLA 285 (498)
T ss_pred CCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHhccCccHHHHHHHHH
Confidence 11 0000000000000000000000 00000000000000000 000000011100 0011
Q ss_pred ---HHHHHHHHHHHHh-----Hhhhcccccccc-C--CchHHHHHHHHHhhhhhHHHHHHHHhhhcCch--h-----HHH
Q 040646 313 ---RLSAIMVTGFGIG-----MVYYGMPLGLGS-L--SFNLYLSVTFNALSELPASLITFFLIGKLKRK--S-----SLL 374 (509)
Q Consensus 313 ---~~~~~~~~~~~~~-----~~~~~~~~~~~~-~--g~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~--~-----~~~ 374 (509)
.++...+.|.... ...|.....-++ + ..++.....+..+.-++.+++..++..|.+++ . -+.
T Consensus 286 ~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFa 365 (498)
T COG3104 286 AIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFA 365 (498)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHH
Confidence 1222222232221 112221111122 2 24456666666666666666666666664332 1 233
Q ss_pred HHHHHHHHHHHHHHHh----c---c-chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH
Q 040646 375 GFTIMSGVCSVLCVVM----G---K-IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF 446 (509)
Q Consensus 375 ~~~~~~~~~~~~~~~~----~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i 446 (509)
++..+++.+.+++... . . .+.++.+...++..++-....|+..+++....|+...+..++........|+.+
T Consensus 366 lGl~l~g~~fl~l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l 445 (498)
T COG3104 366 LGLILAGLGFLILLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTL 445 (498)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555444432 1 1 223445555566667777778889999999999999999999888777777776
Q ss_pred HHHHHHh--------hcccchhHHHHHHHHHHHHHHHH
Q 040646 447 SPVLVAA--------GRQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 447 ~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
+..+.+. ........|..++...++..+..
T Consensus 446 ~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~ 483 (498)
T COG3104 446 GGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL 483 (498)
T ss_pred hceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 6655551 11222334555555555444443
No 120
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=99.51 E-value=1.8e-15 Score=150.86 Aligned_cols=354 Identities=18% Similarity=0.165 Sum_probs=3.0
Q ss_pred ecCCCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-------
Q 040646 87 WDLQAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST------- 159 (509)
Q Consensus 87 ~~~~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~------- 159 (509)
|....+++|++.|++ ++.+.|++.+.+-++..+..++..++.+| ..|-|++-+|.++.+++++++++-+
T Consensus 21 ~~~~~lttiErRF~l---~S~~~G~i~s~~di~~~~~~~~vsy~g~~-~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~ 96 (539)
T PF03137_consen 21 YVNSSLTTIERRFGL---SSSQSGLISSSYDIGSLVVVLFVSYFGGR-GHRPRWIGIGALLMGLGSLLFALPHFLSGPYS 96 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCcceeeecHHHHHHHHHHHhccHhhcCCCc
Confidence 334458999999999 55689999999999999999999999999 7888889999999999998866410
Q ss_pred -------------------------------------------HHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccc
Q 040646 160 -------------------------------------------NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRG 196 (509)
Q Consensus 160 -------------------------------------------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~ 196 (509)
-++.++++.++.|+|....++...+|+-|..++++-+
T Consensus 97 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~sp 176 (539)
T PF03137_consen 97 YEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSP 176 (539)
T ss_dssp -------------------------------------------------------SSS----------------------
T ss_pred cccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCc
Confidence 0457888999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHH-HhcC---------------------C-cchHHHHHHHhhHHHHHHHhheeecCc-hH
Q 040646 197 QVGSIGFFCFTLGFLSLPAIAY-INRG---------------------S-SWRRIYLYTSIPTILYCILVRFLVRES-PR 252 (509)
Q Consensus 197 ~~~~~~~~~~~~G~~~~~~~~~-~~~~---------------------~-~wr~~f~~~~~~~~~~~~~~~~~~~es-p~ 252 (509)
..+|++.+...+|.++|.++|. .+.. . .|..-|++.+...++.++.. ++.|+. |.
T Consensus 177 lYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl-~~FPk~lp~ 255 (539)
T PF03137_consen 177 LYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPL-FFFPKKLPG 255 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH-HcCCccCCC
Confidence 9999999999999998888853 2210 1 37777778888777766555 444543 32
Q ss_pred HHHhcCCHHHHHHHHHHHHhhcCCccccccccCccc--ccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHh-Hhhh
Q 040646 253 WLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSF--EQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIG-MVYY 329 (509)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~ 329 (509)
. ++..++.+...++. ++ ...++.++.+. .....-++-....+.+++||.+....+....-.+... +..|
T Consensus 256 ~---~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~~la~~~~~~~~~G~~tF 327 (539)
T PF03137_consen 256 T---SERQEEKESSERKE---ED--SDKDSFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCLILAGVFESFIVSGFATF 327 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred c---ccccchhhhhhcch---hh--hhhhcccccccccchhhhhhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 00001100000000 00 00000000000 0111223345567888999876555555544444443 3344
Q ss_pred ccccccccCCchHHHHHHHHHh----hhhhHHHHHHHHhhhcC--chhHHHHHHHHHHHHHHH---HHHhc---------
Q 040646 330 GMPLGLGSLSFNLYLSVTFNAL----SELPASLITFFLIGKLK--RKSSLLGFTIMSGVCSVL---CVVMG--------- 391 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~g~l~dr~g--r~~~~~~~~~~~~~~~~~---~~~~~--------- 391 (509)
...++-.+++.++..+..+.++ +..+|.+++|++.+|++ .|+.+....+...+..+. +.+..
T Consensus 328 ~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv 407 (539)
T PF03137_consen 328 LPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGV 407 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeee
Confidence 4344445678887777666664 45578889999999975 344433333333332222 11110
Q ss_pred ---cc---------------------------------h----hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhh
Q 040646 392 ---KI---------------------------------W----TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNS 431 (509)
Q Consensus 392 ---~~---------------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 431 (509)
.+ . ....+++.++..+.............-..+|+++|+.
T Consensus 408 ~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~~~~~~~~~~~~p~~~i~LR~V~~~~rs~ 487 (539)
T PF03137_consen 408 TVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLFILSFFTFMSQVPSTLITLRCVPPEQRSF 487 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHHHHHHHHHhcccchheeeeccCChhhcch
Confidence 00 0 0001111111112222333344556668889999999
Q ss_pred HHHHHHHHH-hHhhHHHHHHHHh
Q 040646 432 AISMVRQAL-VFGGVFSPVLVAA 453 (509)
Q Consensus 432 ~~g~~~~~~-~~g~~i~p~~~~~ 453 (509)
+.|+...+. .+|.+-+|++.|.
T Consensus 488 AlGv~~~~~rllg~IPgPIifG~ 510 (539)
T PF03137_consen 488 ALGVQWLIIRLLGFIPGPIIFGA 510 (539)
T ss_dssp -----------------------
T ss_pred hhhHHHHHHHhhcCcchHHHHhH
Confidence 999998776 5677788988883
No 121
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=99.50 E-value=1.8e-11 Score=119.13 Aligned_cols=306 Identities=15% Similarity=0.190 Sum_probs=197.4
Q ss_pred HHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc--cchhhhhheeeeEeeccC
Q 040646 115 SFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG--RATIGTCAIVLSTELVGK 192 (509)
Q Consensus 115 ~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~e~~~~ 192 (509)
...+...+.++..|.++|| +|||..+.+......+..+...+.. +|.++ +.|+. .+.......++++|....
T Consensus 70 ~~~~~~~i~s~~iG~lSD~-~grk~~L~~~~~~~~l~~~~~~~~~-~~~~~----~~~l~g~~~~~~s~~~a~vadis~~ 143 (463)
T KOG2816|consen 70 TAGLLTLISSPLIGALSDR-YGRKVVLLLPLFGTILPALCLLFQG-YWFFL----LLGLSGGFSAIFSVGFAYVADISSE 143 (463)
T ss_pred hhHHHHHHHHhhhHHhhhh-hhhhhhHHHHHHHHHHhHHHHHHHH-HHHhh----hcccccchhhhhhhhhhheeeccch
Confidence 4466777889999999999 9999999999999888888887766 44333 44443 344566778999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHH
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSIS 271 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~ 271 (509)
++|....++....+..+..++|.+ +......|.-.+|.+..+..++..+..+.++||+-. +++.++
T Consensus 144 ~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~----~~~~~~--------- 210 (463)
T KOG2816|consen 144 EERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ----EKERSD--------- 210 (463)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC----cccccc---------
Confidence 999999999999999999999999 567777788889999998888877788889999742 000000
Q ss_pred hhcCCccccccccCcccccccccccchhHHHHHHh---chHHHHHHHHHHHHHHHHhHhhh-cccccc-ccCCchHHHHH
Q 040646 272 TSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE---KKWALRRLSAIMVTGFGIGMVYY-GMPLGL-GSLSFNLYLSV 346 (509)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~g~~~~~~~ 346 (509)
.+..+....+ .........++...+ +|..+...+..++.......... ..++++ ..++++.....
T Consensus 211 ---------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s 280 (463)
T KOG2816|consen 211 ---------ATLRELTPGS-LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS 280 (463)
T ss_pred ---------ccccccCCCc-ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH
Confidence 0000000000 000000001111111 11111111111111111111111 122333 34566655443
Q ss_pred ---HHHHhhhhhHHHHHH-HHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 347 ---TFNALSELPASLITF-FLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 347 ---~~~~~~~~~~~~~~g-~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
...+....++.++.. .+...+|.|+....+...-.+...+..+....+... ....+. .......+...+..+.
T Consensus 281 ~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w~~~--~~~v~~-~~~~~~~pa~~s~~s~ 357 (463)
T KOG2816|consen 281 DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETWMMF--AAGVVV-ALAGIVFPAIRAFASI 357 (463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccchhhh--HHHHHH-HhhcchhHHHHhHHHh
Confidence 333455556666554 778888988888888888888888888854443322 222222 2334556777888888
Q ss_pred ccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 423 LFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
..+++.+|+++++...+..+.+.++|.+.+
T Consensus 358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~ 387 (463)
T KOG2816|consen 358 LVSPEEQGKVFGIISGIEGLSGVVSPALYG 387 (463)
T ss_pred hcccccccchhhHHHHHHHHhhhhhHHHHH
Confidence 999999999999999999999999998887
No 122
>PRK09528 lacY galactoside permease; Reviewed
Probab=99.49 E-value=1.1e-13 Score=136.64 Aligned_cols=144 Identities=16% Similarity=0.157 Sum_probs=124.3
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeee
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLS 186 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 186 (509)
.+.|++.++..++..++.+++|+++|| +|||+.+..+.++.+++.++.+++++.+.+++.+++.|++.+...+....++
T Consensus 262 ~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~ 340 (420)
T PRK09528 262 RVFGYLNSFQVFLEALIMFFAPFIINR-IGAKNALLLAGTIMAVRIIGSGFATGPLEVSILKLLHAFEVPFLLVGVFKYI 340 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999 9999999999999999989999999999999999999999888888888999
Q ss_pred EeeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 187 TELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 187 ~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
.|.+|++.|+...+. ++....+|.++++.+ +++.+..|||..|.+.++..++..++.++.+++.|
T Consensus 341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~ 407 (420)
T PRK09528 341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR 407 (420)
T ss_pred HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 999999999887665 677788999999888 78888889999999988887765555555555543
No 123
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=99.44 E-value=6e-12 Score=123.47 Aligned_cols=366 Identities=18% Similarity=0.149 Sum_probs=210.1
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-----CchHHHHHHHHHHHHHHHHHHHHh----HHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-----GRKNMLFLSCLMMSVSCLLTIFST----NMW 162 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-----Grr~~l~~~~~~~~i~~~~~~~~~----~~~ 162 (509)
.|-+++++|+ ++.+.....+...+...+- ++.|.++|- + .||+-++++.++..++.+..+..+ +..
T Consensus 13 ~~~l~~~l~l---s~~~~~~~~~~~~lPw~~K-p~~g~lsD~-~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~ 87 (433)
T PF03092_consen 13 YPFLKDDLGL---SPAQLQRLSSLASLPWSIK-PLYGLLSDS-FPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAA 87 (433)
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHhCchHHh-hhHHhhccc-ccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhh
Confidence 5788899999 4447777777777777665 678999998 5 366667777777766666655533 466
Q ss_pred HHHHHHHHHhhccchhhhhheeeeEeecc--CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646 163 IYSVLRFINGFGRATIGTCAIVLSTELVG--KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 163 ~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~ 239 (509)
...+.-++..+|.......+-+++.|... ++.||...+.......+|.+++..+ |.+.+..++|..|.+.+++..+.
T Consensus 88 ~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~ 167 (433)
T PF03092_consen 88 IAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLM 167 (433)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHH
Confidence 77777788899999999999999999884 3347788888888888999999888 67888889999998888777765
Q ss_pred HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHH-HHH
Q 040646 240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLS-AIM 318 (509)
Q Consensus 240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~ 318 (509)
.+...+..+|.++ .+.++.... .+ + +.+ ......++.....++.++.+..+...+ ..+
T Consensus 168 ~~~~~~~~~e~~~-----~~~~~~~~~-------~~------~--~~~-~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~ 226 (433)
T PF03092_consen 168 LIVALFLLEERKV-----RPADEVFSF-------GK------E--EVP-CLFGSFREQLSELWRALQQRAIWQPILFFIF 226 (433)
T ss_pred HHHHHHhhhhccc-----cccchhhcc-------cc------c--ccc-hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5555555554211 000000000 00 0 000 000001122334666777776665555 222
Q ss_pred HHHHHHhH----hhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc
Q 040646 319 VTGFGIGM----VYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG 391 (509)
Q Consensus 319 ~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~ 391 (509)
+..+.... .+|.........++++...+. +.+++.++|..+......+..-|+++....++..+..+.-....
T Consensus 227 ~~~~~~~~~~a~~fy~~~~~~~gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv 306 (433)
T PF03092_consen 227 FFNLPPSISSASSFYFQTDALGGPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLV 306 (433)
T ss_pred HHHhccCCCCccEEEEEeccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEE
Confidence 22221111 111111111122255544333 33345555555555555555666666655554444333211110
Q ss_pred c--------chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh----hc----
Q 040646 392 K--------IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA----GR---- 455 (509)
Q Consensus 392 ~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~----~~---- 455 (509)
. +..+..+.-.++........+.....+++|+.|+...|+..++...+.++|..++..+... ..
T Consensus 307 ~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~ 386 (433)
T PF03092_consen 307 TRWNLDLGIPDQWFALGDTILEEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRD 386 (433)
T ss_pred EEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 0 1111112222333333444455567789999999999999999988888887766655541 11
Q ss_pred --ccchhHHHHHHHHHHHHHHHHhhccCCC
Q 040646 456 --QNNFLSYGIFGLVIGLCGLFVIGLPETR 483 (509)
Q Consensus 456 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (509)
.+.....++..++.++...+..++|+.+
T Consensus 387 ~f~~l~~lili~~~~~ll~l~ll~lLp~~~ 416 (433)
T PF03092_consen 387 DFSNLWLLILICSVIQLLPLPLLFLLPPQK 416 (433)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 1122233344444444445555666644
No 124
>TIGR00889 2A0110 nucleoside transporter. This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.
Probab=99.39 E-value=5.3e-13 Score=131.18 Aligned_cols=142 Identities=12% Similarity=0.118 Sum_probs=123.1
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHhhccchhhhhhe
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----NMWIYSVLRFINGFGRATIGTCAI 183 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----~~~~l~~~r~l~G~~~g~~~~~~~ 183 (509)
..+...++..++..++.++.|+++|| +|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+...
T Consensus 252 ~~g~~~~~~~i~~i~~~~~~g~l~dr-~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~ 330 (418)
T TIGR00889 252 NASIWMSLSQFSEIFFILTIPFFLKR-FGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGS 330 (418)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999 9999999999999988877776632 346777889999999998889989
Q ss_pred eeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcC------CcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 184 VLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRG------SSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 184 ~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~------~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
.++.|++|+++|+++.++.+ ...++|.+++|++ +.+.+. +||+..|.+.+++.++..++..+++||+
T Consensus 331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~ 405 (418)
T TIGR00889 331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS 405 (418)
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999997 6788999999999 566554 5799999999888888777777888876
No 125
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=99.37 E-value=1.4e-12 Score=134.43 Aligned_cols=140 Identities=17% Similarity=0.074 Sum_probs=119.2
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
..+...+..++..++.++.|+++|| +|||++++++.++.++++++.+++++...+++.+++.|++.++.++...++++|
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr-~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aE 675 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDK-IGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVE 675 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667779999999999999999 999999999999999999999999988888889999999888889999999999
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
++|.++|++++|+..+...+|.+++|+++ .+.. .+...+|++.++..++.+ +...++||+.
T Consensus 676 l~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~-~~~~~pf~i~a~~lll~~-ll~~~LPET~ 737 (742)
T TIGR01299 676 LYPSDKRATAFGFLNALCKAAAVLGILIFGSFVG-ITKAAPILFASAALACGG-LLALKLPDTR 737 (742)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHH-HHHHhCCCCc
Confidence 99999999999999999999999999995 4544 345677777777766644 3445678873
No 126
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.36 E-value=1.7e-11 Score=122.49 Aligned_cols=272 Identities=15% Similarity=0.131 Sum_probs=184.1
Q ss_pred CCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-----------
Q 040646 91 AHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST----------- 159 (509)
Q Consensus 91 ~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~----------- 159 (509)
.+.+|++.|++ ++.+.|++.+.+=++..+...+..+...| .-|-+++-+|+++.+++++++++-+
T Consensus 119 ~IttiErRF~i---~Ss~sG~I~s~~dig~~l~i~fVsYfG~r-~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~ 194 (735)
T KOG3626|consen 119 VITTIERRFKI---SSSQSGLIASSYDIGNLLLIIFVSYFGSR-GHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELE 194 (735)
T ss_pred hhhhhhhhcCC---CCCcceeEeeecccchhhhhHhHHHhccc-cCccceeeechhHHHHHHHHHhChHHhcCcchhhhh
Confidence 47899999999 44579999999999999999999999999 8888899999999999999987631
Q ss_pred H----------------------------------------H-HHHHHHHHHHhhccchhhhhheeeeEeeccCcccchh
Q 040646 160 N----------------------------------------M-WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQV 198 (509)
Q Consensus 160 ~----------------------------------------~-~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~ 198 (509)
+ + ..++++.++.|+|....++...+|+-|...+++-...
T Consensus 195 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplY 274 (735)
T KOG3626|consen 195 VIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLY 274 (735)
T ss_pred hhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHH
Confidence 0 2 2677789999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhcC--------------------CcchHHHHHHHhhHHHHHHHhheeecCc-hHHHHhc
Q 040646 199 GSIGFFCFTLGFLSLPAIAYINRG--------------------SSWRRIYLYTSIPTILYCILVRFLVRES-PRWLFIQ 257 (509)
Q Consensus 199 ~~~~~~~~~~G~~~~~~~~~~~~~--------------------~~wr~~f~~~~~~~~~~~~~~~~~~~es-p~~~~~~ 257 (509)
+|++.+...+|.++|.++|.+... -.|+.-|++.+.+.++.++.+ +++|.. |+.
T Consensus 275 lgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~lp~~---- 349 (735)
T KOG3626|consen 275 LGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKELPKS---- 349 (735)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccCccc----
Confidence 999999999999999888643211 137777888888888877555 555543 321
Q ss_pred CCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccc-c
Q 040646 258 GRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGL-G 336 (509)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 336 (509)
.++ +..++.+..+++++ ..+.......+-++-+...+.+++||.+...++...+-..........+|-++ +
T Consensus 350 ~~~----~~~~~~~~~k~~~~----~~~~~~~~~~~ikdfp~s~~~ll~N~if~~~~l~~~~~~~~~~G~~tFlPKyLE~ 421 (735)
T KOG3626|consen 350 QKR----KRARDLHVLKTESG----GAKSDKTFGKKIKDFPKSIKRLLSNPIFMLVVLASVIESLAITGYITFLPKYLET 421 (735)
T ss_pred ccc----chhhhhcccccccc----cccCCcchhhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhHHHhhHHHHHH
Confidence 110 00000000000000 00000000111123455678888998765555554444444433333445554 4
Q ss_pred cCCchHHHHHHHHHhh----hhhHHHHHHHHhhhcC--chhHHHHHHHH
Q 040646 337 SLSFNLYLSVTFNALS----ELPASLITFFLIGKLK--RKSSLLGFTIM 379 (509)
Q Consensus 337 ~~g~~~~~~~~~~~~~----~~~~~~~~g~l~dr~g--r~~~~~~~~~~ 379 (509)
++|.+++.+..+++.. ..+|.+++|++.+|+. .|....+.++.
T Consensus 422 Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~~~ 470 (735)
T KOG3626|consen 422 QFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVIVC 470 (735)
T ss_pred HcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHHHH
Confidence 6888888877776643 4467788899999874 34443333333
No 127
>TIGR00890 2A0111 Oxalate/Formate Antiporter.
Probab=99.34 E-value=4.2e-12 Score=123.57 Aligned_cols=141 Identities=12% Similarity=0.038 Sum_probs=119.0
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNM--WIYSVLRFIN 171 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~--~~l~~~r~l~ 171 (509)
...++++. +..+.+++.+.+.++..++.++.|+++|| +|||+.+.++..+.+++.++..+.++. ..+++..++.
T Consensus 230 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (377)
T TIGR00890 230 PYGQSLGL---SDGFLVLAVSISSIFNGGGRPFLGALSDK-IGRQKTMSIVFGISAVGMAAMLFIPMLNDVLFLATVALV 305 (377)
T ss_pred HHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHHHHHHHHHHcccchhHHHHHHHHHH
Confidence 34456666 33467889999999999999999999999 999999999999988888887776643 3345667888
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHH
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTIL 238 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~ 238 (509)
|++.+...+....++.|.+|+++|+++.++.+....+|..++|.+ +.+.+..||++.|.+.++..++
T Consensus 306 g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~ 373 (377)
T TIGR00890 306 FFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALT 373 (377)
T ss_pred HHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH
Confidence 888888888778889999999999999999999999999999998 6777888999999988776665
No 128
>PRK15011 sugar efflux transporter B; Provisional
Probab=99.33 E-value=1.5e-11 Score=120.31 Aligned_cols=149 Identities=12% Similarity=0.174 Sum_probs=118.1
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG 174 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 174 (509)
+++++|+ +..+.+++.+...++..++.++.|+++|| +|||+.+..+.+...+......+.++.+.+++.+++.+++
T Consensus 243 l~~~~~~---~~~~~g~~~~~~~~~~i~~~~~~G~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 318 (393)
T PRK15011 243 IINELHL---PEKLAGVMMGTAAGLEIPTMLIAGYFAKR-LGKRFLMRVAAVAGVCFYAGMLMAHSPAILLGLQLLNAIY 318 (393)
T ss_pred HHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4456777 34467888888778888899999999999 9999988877766666555555677888888899998888
Q ss_pred cchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 175 RATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 175 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.|...+....+..|..|+ +|+++.++++....+|..+++.+ +.+.+..||+..|++.+++.++.. +..+++||
T Consensus 319 ~g~~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 392 (393)
T PRK15011 319 IGILGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATL-FCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHhhcC
Confidence 777777777778888874 69999999999999999999999 577777899999998777777644 44445554
No 129
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=99.31 E-value=3.4e-10 Score=103.87 Aligned_cols=150 Identities=17% Similarity=0.150 Sum_probs=106.6
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR 175 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 175 (509)
-+++|. ++.|++.+....+....+..++.|.++|| +|||+.-+..+++.+++++ +-..++++.++++|++.|++.
T Consensus 61 Y~~yg~---~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~-~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaT 135 (354)
T PF05631_consen 61 YESYGF---SEHQIAILFVAGFASSAIFGTFVGSLADR-YGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIAT 135 (354)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHH
Confidence 356788 44589999999999999999999999999 9999999999999999996 455688999999999999999
Q ss_pred chhhhhheeeeE-ee----ccCcccchhhhhhH-HHHHHHHHHHHHHH-HHhcCC--cchHHHHHHHhhHHHHHHHhhee
Q 040646 176 ATIGTCAIVLST-EL----VGKKRRGQVGSIGF-FCFTLGFLSLPAIA-YINRGS--SWRRIYLYTSIPTILYCILVRFL 246 (509)
Q Consensus 176 g~~~~~~~~~i~-e~----~~~~~r~~~~~~~~-~~~~~G~~~~~~~~-~~~~~~--~wr~~f~~~~~~~~~~~~~~~~~ 246 (509)
+..+.+--+++. |. +|++..+..++... ...++-.+.+.+++ .+.+.. |-..+|.......++..++....
T Consensus 136 SLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~ 215 (354)
T PF05631_consen 136 SLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKT 215 (354)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhc
Confidence 999988877664 32 22222233333222 22223334444454 444443 34778888777776665555555
Q ss_pred ecCc
Q 040646 247 VRES 250 (509)
Q Consensus 247 ~~es 250 (509)
-+|.
T Consensus 216 W~EN 219 (354)
T PF05631_consen 216 WPEN 219 (354)
T ss_pred cccc
Confidence 5554
No 130
>PRK10489 enterobactin exporter EntS; Provisional
Probab=99.31 E-value=2.3e-11 Score=120.17 Aligned_cols=156 Identities=14% Similarity=0.065 Sum_probs=131.8
Q ss_pred Ccceeee-eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 92 HTSIISE-WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 92 ~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
.|.+.++ +|. +..+.|++.+...++..++.++.+++.|| .++++.+..+.++.+++.++..+.++.+.+.+..++
T Consensus 246 ~p~~~~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~~~l~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (417)
T PRK10489 246 YPALADEVWQM---GAAQIGLLYAAVPLGAALGALTSGWLAHS-ARPGLLMLLSTLGSFLAVGLFGLMPMWILAVLCLAL 321 (417)
T ss_pred hHHHHHhccCC---ChhHhHHHHHHHHHHHHHHHHHHHHhhhc-cCcchHHHHHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 3444444 777 44478999999999999999999999999 888888888888888888888888888888889999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
.|++.+...+...+++.|..|++.||++++++.....+|..+++.+ +.+.+..|++..+++.+...++.+++....+||
T Consensus 322 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (417)
T PRK10489 322 FGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGE 401 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccc
Confidence 9999888778888899999999999999999999999999999998 678888889999988887777766666666676
Q ss_pred ch
Q 040646 250 SP 251 (509)
Q Consensus 250 sp 251 (509)
.+
T Consensus 402 ~~ 403 (417)
T PRK10489 402 LR 403 (417)
T ss_pred cc
Confidence 53
No 131
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=99.30 E-value=3.3e-10 Score=106.93 Aligned_cols=337 Identities=12% Similarity=0.016 Sum_probs=188.4
Q ss_pred eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchh
Q 040646 99 WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATI 178 (509)
Q Consensus 99 ~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 178 (509)
.|++.++ ...-+.-...-.+....++...+.|. .|.|++++++.+...+...+..+.++.+.+-+..+..|++.+.
T Consensus 35 kn~T~~q--v~~~i~Pv~tYSyl~~l~~vflltd~-l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~- 110 (412)
T PF01770_consen 35 KNFTEEQ--VNNEIYPVWTYSYLAFLLPVFLLTDY-LRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAA- 110 (412)
T ss_pred cCCCHHH--HHHhhhhHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHH-
Confidence 5665432 22344555556677788899999999 9999999999999999999999999999999999999999775
Q ss_pred hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc---CCcchHHHHHHHhhHHHHHHHhheeecCchHHHH
Q 040646 179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR---GSSWRRIYLYTSIPTILYCILVRFLVRESPRWLF 255 (509)
Q Consensus 179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~---~~~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~ 255 (509)
..+-.+|+-...|+++--++.+...+..-+|-.++.++|-++- ..+.+....+...... ++++..+++|..++-..
T Consensus 111 evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~-~a~~~~~fLP~~~~S~~ 189 (412)
T PF01770_consen 111 EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVS-LALLIALFLPMPKRSLF 189 (412)
T ss_pred HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH-HHHHHHHHcCCCCcccc
Confidence 7777899999999999999999999999999999888875433 3344555555443333 34455577887654322
Q ss_pred hcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccc-------cchhHHHHHHhchHHHHHHHHHHHHHHHHhHhh
Q 040646 256 IQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNV-------DLYSAIKILVEKKWALRRLSAIMVTGFGIGMVY 328 (509)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 328 (509)
-+++.++... ..+... ++.++.+++..+.+.+.+..+. .....+++..++|..+...+-..+...+.....
T Consensus 190 f~r~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WSlWWa~atcgy~qv~ 267 (412)
T PF01770_consen 190 FHRKPPAEQD-ANESES-DKMNESPESSSSTEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWSLWWAFATCGYYQVI 267 (412)
T ss_pred eeccCccccc-cccccc-cccccccccccccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhHHHHHH
Confidence 2222111100 000000 0000000000000000111111 113345566667765554444444444444333
Q ss_pred hccccccccC---CchH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040646 329 YGMPLGLGSL---SFNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE 402 (509)
Q Consensus 329 ~~~~~~~~~~---g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
++...+.++. +... +..-....+.+.++++..|++..++.+..-+..+......+.+++.....++.+...+..
T Consensus 268 nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~t~~Iwv~Y~~y 347 (412)
T PF01770_consen 268 NYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSFTGNIWVCYAGY 347 (412)
T ss_pred HHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3322222222 1111 222233345556677788888666666554444333332222222222233444444444
Q ss_pred HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhH
Q 040646 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVF 442 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~ 442 (509)
++.........++...-++.....+.-+..+|++.+...+
T Consensus 348 Iif~~~y~fliTiA~~qIA~~l~~e~yaLVFGiNtf~Al~ 387 (412)
T PF01770_consen 348 IIFRSLYMFLITIASFQIAKNLSEERYALVFGINTFVALV 387 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccceeeeeeeHHHHHHH
Confidence 4444444444455555555555556667777776655433
No 132
>PRK05122 major facilitator superfamily transporter; Provisional
Probab=99.29 E-value=4.9e-11 Score=117.12 Aligned_cols=135 Identities=17% Similarity=0.220 Sum_probs=117.6
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
.++..+.+.++..++.++.|++.|| +|||+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+.....+.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~ 329 (399)
T PRK05122 251 AALALTLFGVAFVGARLLFGNLINR-LGGLRVAIVSLLVEILGLLLLWLAPSPWMALIGAALTGFGFSLVFPALGVEAVK 329 (399)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4667778889999999999999999 999999999998888888888888888888899999999999888887778889
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 244 (509)
.+|+++|+++.++++....+|..+++.+ +.+.+..||+..|++.++..++..+..+
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 386 (399)
T PRK05122 330 RVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW 386 (399)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887777 7777888999999998887777544443
No 133
>PRK09874 drug efflux system protein MdtG; Provisional
Probab=99.29 E-value=3.1e-11 Score=118.97 Aligned_cols=135 Identities=18% Similarity=0.214 Sum_probs=119.0
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
.+.+.+++.++..++.++.|+++|| +|||+.+..+..+.+++.+...+.++.+.+++.+++.|++.+...+...+++.+
T Consensus 260 ~g~~~~~~~l~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 260 SGMIASVPGVAALLSAPRLGKLGDR-IGPEKILITALIFSVLLLIPMSFVQTPLQLGILRFLLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhHhhHHHHHHHHHH
Confidence 4667777788889999999999999 999999999988888888888888888889999999999999999998888889
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhh
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 244 (509)
..|+++||+.+++++....+|..++|.+ +.+.+..||+..|++.++..++..+..+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 395 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW 395 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 5777788999999999888877654443
No 134
>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional
Probab=99.28 E-value=1.9e-11 Score=120.42 Aligned_cols=143 Identities=16% Similarity=0.096 Sum_probs=116.4
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
.|.+.++.|. +..+.+.+.+.+.++..++.++.|+++|| +|||+.+..+.+..+++.++..+.++.+.+.+.-++.
T Consensus 243 ~p~~~~~~g~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (406)
T PRK11551 243 LPSLLVGQGL---SRSQAGLVQIAFNIGGALGSLLIGALMDR-LRPRRVVLLIYAGILASLAALAAAPSFAGMLLAGFAA 318 (406)
T ss_pred HHHHHHhCCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3555566677 34478999999999999999999999999 9999999887777777777777777888888888889
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHH
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTIL 238 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~ 238 (509)
|++.+...+...+++.|.+|+++|++..++.+....+|..++|.+ +.+.++. +|...++......++
T Consensus 319 g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK11551 319 GLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILV 387 (406)
T ss_pred HHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHH
Confidence 998888888888999999999999999999999999999999998 5666553 455555555544444
No 135
>TIGR00899 2A0120 sugar efflux transporter. This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.
Probab=99.28 E-value=5.3e-11 Score=115.86 Aligned_cols=148 Identities=14% Similarity=0.233 Sum_probs=119.2
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR 175 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 175 (509)
.+++|. ++.+.+++.+.......++.++.|++.|| +|||+++.++.++..+......+.++.+.+.+.+++.|++.
T Consensus 227 ~~~~g~---~~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 302 (375)
T TIGR00899 227 IHELGL---PDKLAGLMMGTAAGLEIPFMLLAGYLIKR-FGKRRLMLLAALAGVAFYTGLAADNSLWALLMLQLLNAIFI 302 (375)
T ss_pred HHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777 34467888777777778888999999999 99999998887776666666667788888888999999998
Q ss_pred chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecC
Q 040646 176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
+...+....++.|..|+ +|+++.++++....+|..++|.+ +.+.+..||+..|++.++..++.. +...+++|
T Consensus 303 g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 375 (375)
T TIGR00899 303 GILAGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVAL-FCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-HHHheecC
Confidence 88888888888898875 56799999999999999999998 677777899999999888777654 33344443
No 136
>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3
Probab=99.27 E-value=2.2e-11 Score=117.20 Aligned_cols=147 Identities=23% Similarity=0.327 Sum_probs=131.4
Q ss_pred Ccceeee-eccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646 92 HTSIISE-WDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKN-MLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169 (509)
Q Consensus 92 ~~~i~~~-~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 169 (509)
.|.+.++ +|. ++.+.++..+...++..++.++.|++.|| +|||+ .+..+..+..++.+...+.++.+.+.+..+
T Consensus 198 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 273 (352)
T cd06174 198 LPLYLQEVLGL---SAAEAGLLLSLFGLGGILGALLGGLLSDR-LGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALL 273 (352)
T ss_pred HHHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 3444443 366 45578999999999999999999999999 99999 999999999999999999999999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
+.|++.+...+....++.|..|+++|++.+++.+....+|..+++.+ +.+.+..+|+..+.+.+++.++..+.
T Consensus 274 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~ 347 (352)
T cd06174 274 LLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALL 347 (352)
T ss_pred HHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998 67777889999999999888875543
No 137
>TIGR00902 2A0127 phenyl proprionate permease family protein. This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.
Probab=99.26 E-value=8.4e-11 Score=114.56 Aligned_cols=141 Identities=9% Similarity=-0.018 Sum_probs=122.7
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING 172 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 172 (509)
|...+|+|. ++.+.|++.+...++..++.++.+++.|| +|+|+.+.++.+..++..++.+++++.+.+++.++++|
T Consensus 229 ~~~l~~~g~---s~~~~g~l~~~~~~~~i~~~~~~~~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~q~l~g 304 (382)
T TIGR00902 229 AIYWQAAGI---SASATGLLWGIGVLAEIIIFAFSNKLFQN-CSARDLLLISAIACVGRWAIIGAIEAFPLIFLLQILHC 304 (382)
T ss_pred HHHHHHCCC---CHhHHHHHHHHHHHHHHHHHHHhHHHHhh-CCHHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHH
Confidence 344456788 44588999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~ 239 (509)
+..+...+....++.+. |+++|++..++++ ...++|..+++.+ |++.+..|+ ..|++.+.+.++.
T Consensus 305 ~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 305 GTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 99999999999999998 9999999999986 5678999999999 677787786 5567767666653
No 138
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=99.24 E-value=3.1e-11 Score=120.18 Aligned_cols=145 Identities=10% Similarity=0.081 Sum_probs=115.8
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccC-CCchHHHHH--HHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSS-LGRKNMLFL--SCLMMSVSCLLTIFSTNMWIYSVLRF 169 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-~Grr~~l~~--~~~~~~i~~~~~~~~~~~~~l~~~r~ 169 (509)
|.+.+++|. +..+.+++.+...++..+++++.|.++||+ +++|+...+ +.++.+++.++..+.++++.+++.++
T Consensus 265 ~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~i~~~ 341 (455)
T TIGR00892 265 VPYAKDKGV---DEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCI 341 (455)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHH
Confidence 444556777 444789999999999999999999999971 333433333 34444555566677889999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCC-cchHHHHHHHhhHHHHH
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGS-SWRRIYLYTSIPTILYC 240 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~-~wr~~f~~~~~~~~~~~ 240 (509)
+.|++.+...+...+++.|.+|++++++..++++....+|.+++|.+ +.+.+.. +|++.|++.++..++..
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~ 414 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAG 414 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 5666655 59999999888766543
No 139
>PRK10054 putative transporter; Provisional
Probab=99.23 E-value=6.1e-10 Score=108.85 Aligned_cols=169 Identities=14% Similarity=0.054 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHhHhhhcccccc-ccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646 312 RRLSAIMVTGFGIGMVYYGMPLGL-GSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC 387 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~ 387 (509)
......++..++.......++.++ +++|.+......+.+ +..+++.++.|+++||+|||+.+..+..+..++.+.+
T Consensus 11 ~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~ 90 (395)
T PRK10054 11 ALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI 90 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence 334444455555555554555544 567887766554443 5677788999999999999999988888777776666
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHH
Q 040646 388 VVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFG 466 (509)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~ 466 (509)
.+.++ .+..+....+.+.......+....+..|..|+++|+++.|+.+...++|..++|.+.+.. ..+....+.+.+
T Consensus 91 ~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~ 168 (395)
T PRK10054 91 PLVNN--VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAA 168 (395)
T ss_pred HHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHH
Confidence 65332 222222222333333344566778889999999999999999999999999999888732 234445566666
Q ss_pred HHHHHHHHHH-hhccCC
Q 040646 467 LVIGLCGLFV-IGLPET 482 (509)
Q Consensus 467 ~~~~~~~~~~-~~~~~~ 482 (509)
++.++..+.. +++++.
T Consensus 169 ~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 169 ICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 5555554433 334443
No 140
>PRK03545 putative arabinose transporter; Provisional
Probab=99.23 E-value=1.5e-10 Score=113.25 Aligned_cols=148 Identities=15% Similarity=0.100 Sum_probs=115.3
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHh
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCL-LTIFSTNMWIYSVLRFING 172 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~l~~~r~l~G 172 (509)
-+.+++|. +..+.+++.+.+.++..+++++.|+++|| +|||+... +..+..++.. +....++.+.+.+..++.|
T Consensus 231 ~l~~~~g~---s~~~~~~~~~~~~~~~~~g~~~~g~l~dr-~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~g 305 (390)
T PRK03545 231 FVQQVAGL---SENFATLLLLLFGGAGIIGSVLFSRLGNR-HPSGFLLI-AIALLLVCLLLLLPAANSEWHLSVLSIFWG 305 (390)
T ss_pred HHHHhcCC---CccHHHHHHHHHHHHHHHHHHHHHHHhhc-cchhHHHH-HHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 34455677 34478899999999999999999999999 99887544 4444444433 3455677888888899999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
++.+...+.....+.|..| ++|++++++++....+|..+||++ +.+.++.|++..|++.+++.++..+......
T Consensus 306 ~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 306 IAIMCIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHhcchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 9887777777777778766 688999999999999999999999 6788899999999998888777555544443
No 141
>PRK12382 putative transporter; Provisional
Probab=99.23 E-value=4.5e-11 Score=117.07 Aligned_cols=136 Identities=15% Similarity=0.177 Sum_probs=119.1
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
.++..+.+.++..+++++.|++.|| +|+|+.+..+..+.+++.++..+.++.+.+++.+++.|++.+...+...+.+.|
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 329 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDR-FGGVKVAIVSLLVETVGLLLLWLAPTAWVALAGAALTGAGCSLIFPALGVEVVK 329 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-cCCCeehHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4566777888889999999999999 999999999999999988888888888888889999999999888888888889
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRF 245 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 245 (509)
.+|+++||++.++++....+|..++|.+ +.+.++.||+..|.+.++..++..+....
T Consensus 330 ~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 330 RVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999988 67888889999999988877775544433
No 142
>TIGR00900 2A0121 H+ Antiporter protein.
Probab=99.22 E-value=5.3e-10 Score=108.29 Aligned_cols=162 Identities=12% Similarity=0.034 Sum_probs=110.7
Q ss_pred HHHHHHHHHhHhhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc
Q 040646 316 AIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK 392 (509)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~ 392 (509)
..++..++.......+|.+..+.+.+......+ ..++.+++.++.|+++||+|||+.+..+.++..++..+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~ 86 (365)
T TIGR00900 7 AQLISLIGTAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVAL 86 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555566677777777766554443 44677788899999999999999999888777776665555321
Q ss_pred ---chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHH
Q 040646 393 ---IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGL 467 (509)
Q Consensus 393 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~ 467 (509)
.+.+......++.+++.+...+...++..|.+|+++|+++.++.+....+|..++|.+.+.. ..+....+.+.++
T Consensus 87 ~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~ 166 (365)
T TIGR00900 87 LGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAV 166 (365)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 13333444444555666666778889999999999999999999999999999999888732 2334444555454
Q ss_pred HHHHHHHHHh
Q 040646 468 VIGLCGLFVI 477 (509)
Q Consensus 468 ~~~~~~~~~~ 477 (509)
..++..+..+
T Consensus 167 ~~~~~~~~~~ 176 (365)
T TIGR00900 167 GFAISALLIV 176 (365)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 143
>TIGR00879 SP MFS transporter, sugar porter (SP) family. This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)
Probab=99.20 E-value=7.9e-11 Score=118.60 Aligned_cols=156 Identities=15% Similarity=0.100 Sum_probs=119.2
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----h------H
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-----T------N 160 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-----~------~ 160 (509)
.|.+.+++|.+. .+.++......++..++.++.|+++|| +|||+.+.++.++.+++.++.++. + +
T Consensus 307 ~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
T TIGR00879 307 SPTIFENAGVST---DHAFLVSIIVGAVNFAFTFVAIFLVDR-FGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSG 382 (481)
T ss_pred HHHHHHHcCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccchh
Confidence 456666777743 367888889999999999999999999 999999999988887777776621 1 2
Q ss_pred HHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646 161 MWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 161 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~ 239 (509)
...+....++.+.......+....++.|.+|+++|+++.++......+|.+++|.+ +.+.++.+|++.|++.++.+++.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~ 462 (481)
T TIGR00879 383 NVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLG 462 (481)
T ss_pred HHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHH
Confidence 33333333333332233446667778999999999999999999999999999988 67777789999999988888877
Q ss_pred HHHhheeecCch
Q 040646 240 CILVRFLVRESP 251 (509)
Q Consensus 240 ~~~~~~~~~esp 251 (509)
++...++.||++
T Consensus 463 ~i~~~~~~~~~~ 474 (481)
T TIGR00879 463 LIFVYFFLPETK 474 (481)
T ss_pred HHHHheecccCC
Confidence 766667777753
No 144
>PRK10473 multidrug efflux system protein MdtL; Provisional
Probab=99.19 E-value=1.9e-09 Score=105.63 Aligned_cols=163 Identities=17% Similarity=0.081 Sum_probs=111.1
Q ss_pred HHHHHhHhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhH
Q 040646 320 TGFGIGMVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS 396 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
...+.......+|.+.++.+.+...... ...++..++.++.|+++||+|||+.+..+.++..++.......+ +..
T Consensus 15 ~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~--~~~ 92 (392)
T PRK10473 15 YPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAE--TSS 92 (392)
T ss_pred HHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhC--cHH
Confidence 3334444445567777788877655443 33466778889999999999999999998888887777666533 222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHH
Q 040646 397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~ 474 (509)
......++.+++.+..++....+..|.+|+++|+++.++.+....+|..++|.+.+.. ..++...+.+.+++.++..+
T Consensus 93 ~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~ 172 (392)
T PRK10473 93 LFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLL 172 (392)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHH
Confidence 3333334444555556667788999999999999999999999899988999887732 23444555666655555444
Q ss_pred H-HhhccCCCC
Q 040646 475 F-VIGLPETRD 484 (509)
Q Consensus 475 ~-~~~~~~~~~ 484 (509)
+ .+..+|+++
T Consensus 173 ~~~~~~~~~~~ 183 (392)
T PRK10473 173 LSLFILKETRP 183 (392)
T ss_pred HHHHHcCCCCC
Confidence 4 345566543
No 145
>PRK11663 regulatory protein UhpC; Provisional
Probab=99.18 E-value=1e-09 Score=108.83 Aligned_cols=153 Identities=14% Similarity=0.065 Sum_probs=107.5
Q ss_pred hhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
....|.+.+++|.+......+ ..++..++.++.|++.||+|||+.+.++.++..++.++..... +.+......++
T Consensus 43 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l 120 (434)
T PRK11663 43 NAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSS--SLWAFALLWVL 120 (434)
T ss_pred HHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 344677778888886655443 4467788899999999999999999999888888877666632 23333333334
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-HhhccC
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGLPE 481 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 481 (509)
.+++.+..++....+..|.+|+++|++++++.+....+|..++|.+.+.. ..++...+.+.+++.++..++ .++++|
T Consensus 121 ~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 121 NAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred HHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555556677788999999999999999999999999999999887732 234455566655554443333 344554
Q ss_pred C
Q 040646 482 T 482 (509)
Q Consensus 482 ~ 482 (509)
+
T Consensus 201 ~ 201 (434)
T PRK11663 201 K 201 (434)
T ss_pred C
Confidence 3
No 146
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.
Probab=99.17 E-value=1.9e-09 Score=105.39 Aligned_cols=154 Identities=16% Similarity=0.087 Sum_probs=108.4
Q ss_pred hccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646 329 YGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 329 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
-..|.+.++.|.+......+ ..++..++.++.|++.||+|||+.+..+..+..++.+.....+ +.+......++.
T Consensus 26 ~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~ 103 (385)
T TIGR00710 26 PAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSN--NIETLLVLRFVQ 103 (385)
T ss_pred ccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHH
Confidence 34566777788876555433 4467788899999999999999999998888888777766643 233333344455
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-hhccCC
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-IGLPET 482 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 482 (509)
+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+.. ..++...+.+.++..++..+.. +..||+
T Consensus 104 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (385)
T TIGR00710 104 AFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPET 183 (385)
T ss_pred HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5555666677888999999999999999999999999999999888732 2334445555555555444443 345554
Q ss_pred CC
Q 040646 483 RD 484 (509)
Q Consensus 483 ~~ 484 (509)
++
T Consensus 184 ~~ 185 (385)
T TIGR00710 184 LP 185 (385)
T ss_pred CC
Confidence 43
No 147
>PRK11195 lysophospholipid transporter LplT; Provisional
Probab=99.17 E-value=1.3e-09 Score=106.56 Aligned_cols=168 Identities=11% Similarity=0.025 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646 311 LRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC 387 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~ 387 (509)
+......++..++........+....+.+.+..... ....+...+..++.|+++||+|||+++..+..+.+++.+.+
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~ 85 (393)
T PRK11195 6 YAIMAAQFFSALADNALLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLM 85 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHH
Confidence 333333444444444444444444566666554433 33446777888999999999999999999988877766655
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc-cchhHHHHHH
Q 040646 388 VVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ-NNFLSYGIFG 466 (509)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~-~~~~~~~~~~ 466 (509)
....+ . ....++.+++.+...|...+++.|.+|+++|+++.|+......+|..++|.+.+.... .....+.+.+
T Consensus 86 ~~~~~--~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~ 160 (393)
T PRK11195 86 LFGIH--P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCA 160 (393)
T ss_pred HHHHH--H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44221 1 2223445566677778889999999999999999999999999999999998883322 2222333333
Q ss_pred HHHHHHHHHHhhccCCC
Q 040646 467 LVIGLCGLFVIGLPETR 483 (509)
Q Consensus 467 ~~~~~~~~~~~~~~~~~ 483 (509)
...+++.+....+||.+
T Consensus 161 ~~~~~~~~~~~~l~~~~ 177 (393)
T PRK11195 161 LIYLLAALFNLFIPRLG 177 (393)
T ss_pred HHHHHHHHHHhcCCCCc
Confidence 33333333345566543
No 148
>TIGR00897 2A0118 polyol permease family. This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.
Probab=99.17 E-value=3.8e-10 Score=110.81 Aligned_cols=145 Identities=14% Similarity=0.080 Sum_probs=109.2
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHH-HHHHHHHHHHHHHHH-----HhHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLF-LSCLMMSVSCLLTIF-----STNMWIYS 165 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~-~~~~~~~i~~~~~~~-----~~~~~~l~ 165 (509)
.|.+.+++|.+ ..+.+++.+...++..++.++.|+++|| +|||+.+. .+.+..+++.+...+ .++.+.+.
T Consensus 245 ~p~~~~~~g~s---~~~~~~~~~~~~~~~~ig~~~~g~l~dr-~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~ 320 (402)
T TIGR00897 245 LPMFVAELGFS---TSEWLQIWGTFFFTNIVFNVIFGIVGDK-LGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVAL 320 (402)
T ss_pred HHHHHHHcCCC---hhHHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHH
Confidence 45556677874 3467888889999999999999999999 99988764 333334444333332 23567777
Q ss_pred HHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646 166 VLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 166 ~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
+..++.|++.+...+. ...+.|.. +++|+++.|+.+....+|..++|.+ +.+.+..||+..+++.++..++..++
T Consensus 321 ~~~~~~G~~~~~~~~~-~~~~~~~~-~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~ 396 (402)
T TIGR00897 321 IIAIALGIFLAGYVPL-AAVFPTLA-PKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFL 396 (402)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHhhC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 8888889887776554 44556754 4689999999999999999999998 68888889999999988777665433
No 149
>TIGR00883 2A0106 metabolite-proton symporter. This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.
Probab=99.17 E-value=1e-10 Score=114.58 Aligned_cols=137 Identities=16% Similarity=0.073 Sum_probs=106.3
Q ss_pred eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHH--HHHHH--HhHHHHHHHHHHHHh
Q 040646 97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSC--LLTIF--STNMWIYSVLRFING 172 (509)
Q Consensus 97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~--~~~~~--~~~~~~l~~~r~l~G 172 (509)
++++. ++.+.+...+...++..++.++.|+++|| +|||+.+.....+..+.. +...+ .++.+.+.+..++.|
T Consensus 248 ~~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 323 (394)
T TIGR00883 248 QTLGL---SANSALLVLMLSLILFFITIPLSGALSDR-IGRRPVLIIFTVLAALLAVPLLMALLDSGSFTLFFFLVLGLA 323 (394)
T ss_pred HhcCC---ChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56676 33467888999999999999999999999 999998876555444433 22222 246777778889999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHH
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTI 237 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~ 237 (509)
++.+...+...+++.|.+|+++|+++.++ ++.+..+|..++|.+ +.+.++.| |+..++......+
T Consensus 324 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 324 LIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 99888999999999999999999999998 456667888889988 67777777 8887776655443
No 150
>TIGR02332 HpaX 4-hydroxyphenylacetate permease. This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.
Probab=99.16 E-value=4e-09 Score=103.73 Aligned_cols=155 Identities=11% Similarity=0.066 Sum_probs=110.8
Q ss_pred hhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
.+..|.+.++++.+....+.+ ..++..++.+..|++.||+|||+.+..+.++..++.++..+..+ .......-++
T Consensus 28 ~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~r~l 105 (412)
T TIGR02332 28 GFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATG--PESLYLLRIL 105 (412)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHH
Confidence 344566677888876665444 34667788899999999999999999998888888877776433 3333344445
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--------cccchhHHHHHHHHHHHHHHH-
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--------RQNNFLSYGIFGLVIGLCGLF- 475 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--------~~~~~~~~~~~~~~~~~~~~~- 475 (509)
.+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+.. ..++...+.+.++..++..++
T Consensus 106 ~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~ 185 (412)
T TIGR02332 106 VGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMT 185 (412)
T ss_pred HHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHH
Confidence 55666666677778899999999999999999999999999988887632 124556666666665544443
Q ss_pred HhhccCCCC
Q 040646 476 VIGLPETRD 484 (509)
Q Consensus 476 ~~~~~~~~~ 484 (509)
.+++||+++
T Consensus 186 ~~~~~~~p~ 194 (412)
T TIGR02332 186 WFWLDDSPD 194 (412)
T ss_pred hhccCCCcc
Confidence 345666543
No 151
>TIGR00891 2A0112 putative sialic acid transporter.
Probab=99.15 E-value=1.8e-09 Score=106.23 Aligned_cols=121 Identities=12% Similarity=0.127 Sum_probs=92.7
Q ss_pred ccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
..+.+.++.|.+...... ...++..++.++.|+++||+|||+.+..+.++.+++.++..+.+ +........++.+
T Consensus 34 ~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G 111 (405)
T TIGR00891 34 VLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAP--GYITMFIARLVIG 111 (405)
T ss_pred HHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 345566777777555443 34477788999999999999999999988888888777766633 3333344445555
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
++.+..++...+++.|.+|+++|+.+.++.+....+|..++|.+.+
T Consensus 112 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ 157 (405)
T TIGR00891 112 IGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYS 157 (405)
T ss_pred hhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666677778889999999999999999999999999999988876
No 152
>PRK09556 uhpT sugar phosphate antiporter; Reviewed
Probab=99.15 E-value=1.9e-10 Score=115.19 Aligned_cols=142 Identities=19% Similarity=0.116 Sum_probs=105.0
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHh
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT--IFSTNMWIYSVLRFING 172 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~--~~~~~~~~l~~~r~l~G 172 (509)
+++++|++ ..+.++..+.+.++..++.+++|+++|| +|||+.+.....+..++..+. ...++.+.+.+.+++.|
T Consensus 285 l~~~~g~s---~~~a~~~~~~~~~~~~ig~~~~G~lsDr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 360 (467)
T PRK09556 285 AFQELGFS---KEDAINTFTLFEIGALVGSLLWGWLSDL-ANGRRALVACIALALIIFTLGVYQHATSEYMYLASLFALG 360 (467)
T ss_pred HHHccCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 45678884 4467899999999999999999999999 999988766554444333222 23346666778888888
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHH-HHHHHHHH-HHHhc------------CCcchHHHHHHHhhHHH
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTL-GFLSLPAI-AYINR------------GSSWRRIYLYTSIPTIL 238 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~-~~~~~------------~~~wr~~f~~~~~~~~~ 238 (509)
+..............|.+|++.||++.|+.+....+ |..++|.+ |++.+ ..+|+..|++..+..++
T Consensus 361 ~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~ 440 (467)
T PRK09556 361 FLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIG 440 (467)
T ss_pred HHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHH
Confidence 654333333334566999999999999999988886 76788777 77777 57899999888666665
Q ss_pred HH
Q 040646 239 YC 240 (509)
Q Consensus 239 ~~ 240 (509)
..
T Consensus 441 ~~ 442 (467)
T PRK09556 441 CI 442 (467)
T ss_pred HH
Confidence 43
No 153
>PRK10077 xylE D-xylose transporter XylE; Provisional
Probab=99.14 E-value=3.9e-10 Score=113.66 Aligned_cols=156 Identities=14% Similarity=0.064 Sum_probs=114.2
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HH--HHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NM--WIYSVL 167 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~--~~l~~~ 167 (509)
.|.+.+++|.+.+ ..++......+...++.++.|+++|| +|||+.++.+.++.+++.++.+... +. .....+
T Consensus 294 ~p~i~~~~g~~~~---~~~~~~~~~~~~~~i~~~~~g~l~dr-~g~r~~~i~~~~~~~v~~~~l~~~~~~~~~~~~~~~~ 369 (479)
T PRK10077 294 APEIFKTLGASTD---IALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLS 369 (479)
T ss_pred HHHHHHHcCCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHH-hcChHHHHHhHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 4666677777433 34566667778888999999999999 9999999999999888887776432 11 122233
Q ss_pred HHHHhhccch-hhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-H------HHhcCCcchHHHHHHHhhHHHH
Q 040646 168 RFINGFGRAT-IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-A------YINRGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 168 r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~------~~~~~~~wr~~f~~~~~~~~~~ 239 (509)
.++.+++.+. ..+....++.|.+|+++|++++++......+|..+++.+ . ++.++.+|++.|++.++.+++.
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (479)
T PRK10077 370 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 449 (479)
T ss_pred HHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHH
Confidence 3444444333 236678899999999999999999999888888877554 2 2334678999999888887776
Q ss_pred HHHhheeecCch
Q 040646 240 CILVRFLVRESP 251 (509)
Q Consensus 240 ~~~~~~~~~esp 251 (509)
.+..+++.||+.
T Consensus 450 ~~~~~~~~~e~~ 461 (479)
T PRK10077 450 ALFMWKFVPETK 461 (479)
T ss_pred HHHHHhccccCC
Confidence 666667778864
No 154
>TIGR00893 2A0114 d-galactonate transporter.
Probab=99.13 E-value=1.1e-09 Score=107.20 Aligned_cols=154 Identities=16% Similarity=0.172 Sum_probs=109.9
Q ss_pred hhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
....|.+.++.|.+..... ....++..++.++.|++.||+|||+.+..+.++.+++..++.+.. +.+......++
T Consensus 14 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l 91 (399)
T TIGR00893 14 SFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAG--AYVSLYILRVL 91 (399)
T ss_pred hHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHc--CHHHHHHHHHH
Confidence 3444566667777655443 444577888999999999999999999988888888777776643 33444444455
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHH-hhccC
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFV-IGLPE 481 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 481 (509)
.+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+. ...++...+.+.+++.++..+.. +..++
T Consensus 92 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (399)
T TIGR00893 92 LGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPD 171 (399)
T ss_pred HHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecC
Confidence 5566666777888999999999999999999999999999999988873 23344555666665555544443 33444
Q ss_pred CC
Q 040646 482 TR 483 (509)
Q Consensus 482 ~~ 483 (509)
++
T Consensus 172 ~~ 173 (399)
T TIGR00893 172 PP 173 (399)
T ss_pred CC
Confidence 33
No 155
>PRK03633 putative MFS family transporter protein; Provisional
Probab=99.13 E-value=5.9e-10 Score=108.67 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=113.4
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFING 172 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G 172 (509)
|...++.|. +..+.++..+...++..+++++.|++.|| +|+|+++..+..+.+++.+... + ........++.|
T Consensus 224 p~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~~~~~~l~~~~~~~~~~~~~~~--~-~~~~~~~~~l~g 296 (381)
T PRK03633 224 PLYLNHQGM---SDASIGFWMALLVSAGILGQWPIGRLADR-FGRLLVLRVQVFVVILGSIAML--S-QAAMAPALFILG 296 (381)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHhhhHHHHHH-cCcHHHHHHHHHHHHHHHHHHh--h-hHHHHHHHHHHH
Confidence 444445566 33467888999999999999999999999 9999999888888777665443 2 233445677888
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~ 240 (509)
++.....|...+++.|..|+++++...+.+....++|.+++|.+ +++.++.+|++.|.+.+...++..
T Consensus 297 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~ 365 (381)
T PRK03633 297 AAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYL 365 (381)
T ss_pred HHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 87777889989989999998888888888888899999999998 678888899999999888777654
No 156
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.13 E-value=4.9e-08 Score=93.95 Aligned_cols=305 Identities=15% Similarity=0.036 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccC
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGK 192 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 192 (509)
.++-+....++.++.+.+.|+ .|.|+.+.++...+....+..-+ +|-+.+++.-.+.|+|.+..+..--.|++|..++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~-i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~~st~ 133 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNF-LGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTSNSTR 133 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHH-hhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhhcCCh
Confidence 677778888999999999999 99999999999998887777665 4567788889999999999999999999999999
Q ss_pred cccchhhhhhHHHHHHHHHHHHHHHHHhcC---------Ccch-H----------HHHHHHhhHHH--HHHHhheeecCc
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAIAYINRG---------SSWR-R----------IYLYTSIPTIL--YCILVRFLVRES 250 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~---------~~wr-~----------~f~~~~~~~~~--~~~~~~~~~~es 250 (509)
+.+.+..++.......+.++|..+-.+... .+-+ . ...+.+++..+ +.+....+.|.+
T Consensus 134 ~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~ 213 (461)
T KOG3098|consen 134 ETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK 213 (461)
T ss_pred hhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc
Confidence 999999999988888888888766322110 1111 1 11111111111 111222222221
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
. . ..+.+.. +....+......+++++++........+..++...+....
T Consensus 214 ~-~------~~~~~~~------------------------~~~~~~~l~~~~~l~~~~~ml~L~~~f~~tG~~~Sf~~~i 262 (461)
T KOG3098|consen 214 D-V------VNCKSSS------------------------ETSFSELLKLTFKLLKTPKMLLLFPFFFYTGLETSFWISI 262 (461)
T ss_pred c-h------hhhhhhc------------------------cccHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHhc
Confidence 0 0 0000000 0000001112334555655433333333332222221111
Q ss_pred cccc--cc-cCCchH----HHHHHHHHhhhhhHHHHHHHHhhh---cCchhHHHHHHHHHHHHHHHHHHh-ccc------
Q 040646 331 MPLG--LG-SLSFNL----YLSVTFNALSELPASLITFFLIGK---LKRKSSLLGFTIMSGVCSVLCVVM-GKI------ 393 (509)
Q Consensus 331 ~~~~--~~-~~g~~~----~~~~~~~~~~~~~~~~~~g~l~dr---~gr~~~~~~~~~~~~~~~~~~~~~-~~~------ 393 (509)
.|.. .. ..+.+. .......+++.+.+.+..+.+.+| +||++++.++..+..+.+++.... +..
T Consensus 263 ypt~i~ft~~~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t 342 (461)
T KOG3098|consen 263 YPTCISFTRKLGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPT 342 (461)
T ss_pred cchhhhhhhhccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCC
Confidence 1211 11 223332 233445557777777777777655 688888888777776666555442 111
Q ss_pred ---------hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 394 ---------WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 394 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
.........++.+++-....+..+.++...+ ++.|..+.++...-..++..+.-+..
T Consensus 343 ~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~ 408 (461)
T KOG3098|consen 343 DSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFS 408 (461)
T ss_pred cccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhh
Confidence 1223333344455555666667788888888 45678888877766666665443333
No 157
>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms. These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.
Probab=99.12 E-value=1.8e-09 Score=103.97 Aligned_cols=155 Identities=13% Similarity=0.118 Sum_probs=111.1
Q ss_pred HHHHHHhHhhhccc-cccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646 319 VTGFGIGMVYYGMP-LGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIW 394 (509)
Q Consensus 319 ~~~~~~~~~~~~~~-~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
+..+.........| .+.+++|.+.... .....++..++.++.|+++||+|||+.+..+.++.+++.++..+. .+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~- 84 (352)
T PF07690_consen 7 LSGFGFSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFA-SN- 84 (352)
T ss_dssp HHHHHHHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHH-CC-
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhh-hh-
Confidence 33344444444455 5667777665443 344457788899999999999999999999988888884444432 22
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHH
Q 040646 395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLC 472 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~ 472 (509)
.+..+...++.+++.+...+....++.|.+|+++|+++.++.+....+|..++|.+.+... .+....+.+.+++.++.
T Consensus 85 ~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 164 (352)
T PF07690_consen 85 FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIA 164 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHH
T ss_pred HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhh
Confidence 3344555556666667778889999999999999999999999999999999999998433 23445677777776666
Q ss_pred HHH
Q 040646 473 GLF 475 (509)
Q Consensus 473 ~~~ 475 (509)
.++
T Consensus 165 ~il 167 (352)
T PF07690_consen 165 AIL 167 (352)
T ss_dssp HHH
T ss_pred hhh
Confidence 553
No 158
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter. GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.
Probab=99.12 E-value=2.8e-09 Score=106.07 Aligned_cols=117 Identities=23% Similarity=0.296 Sum_probs=98.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhccchhhhhheeee
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-TNMWIYSVLRFINGFGRATIGTCAIVLS 186 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i 186 (509)
+.+++.+...++..++.+++++++|| +|+|+++..+.++.+++.++..+. ++.+.+.+..++.|++.+...+...+++
T Consensus 258 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 336 (437)
T TIGR00792 258 LFSYMGSIAIVAGLIGVLLFPRLVKK-FGRKILFAGGILLMVLGYLIFFFAGSNLPLILVLIILAGFGQNFVTGLVWALV 336 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999 999999999998888887777665 4667777888899999999999989998
Q ss_pred Eeecc-------CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcc
Q 040646 187 TELVG-------KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSW 225 (509)
Q Consensus 187 ~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~w 225 (509)
+|..+ ++++|...++.+....+|..+++.+ +.+.+..||
T Consensus 337 ~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~ 383 (437)
T TIGR00792 337 ADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 383 (437)
T ss_pred hhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88865 4567999999999999999999888 666554444
No 159
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=99.11 E-value=8.2e-09 Score=100.91 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=106.9
Q ss_pred cccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+|.+.++.|.+...... ...++..++.++.|.+.||+|||+.+..+.++.+++.++..+. ++.+..+..-++.++
T Consensus 43 l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~ 120 (394)
T PRK10213 43 LTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA--NSFSLLLIGRACLGL 120 (394)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH--ChHHHHHHHHHHHHH
Confidence 45566778887665544 3446777889999999999999999999999988877776663 334444444455556
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH-hhccCC
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV-IGLPET 482 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 482 (509)
+.+...+....++.|.+|+++|+.+.++......+|..++|.+.+... .++...+.+.+++.++..+.. ...||.
T Consensus 121 ~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 121 ALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred hhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 666677888889999999999999999999999999999998887332 344455555555444433332 234553
No 160
>PRK10091 MFS transport protein AraJ; Provisional
Probab=99.11 E-value=6.1e-09 Score=101.57 Aligned_cols=163 Identities=10% Similarity=0.005 Sum_probs=112.2
Q ss_pred HHHHHHhHhhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchh
Q 040646 319 VTGFGIGMVYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWT 395 (509)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (509)
............+|.+.+++|.+.... .....++..++.++.|++.||+|||+.+..+..+.+++.++..+.+ +.
T Consensus 14 ~~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~--~~ 91 (382)
T PRK10091 14 GLGMAEFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSS--SY 91 (382)
T ss_pred HHHhhHHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhC--cH
Confidence 333333344445577777888775544 3445578889999999999999999999999988888887776643 33
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHH
Q 040646 396 SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCG 473 (509)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~ 473 (509)
+.....-++.+++.+...+.......|.+|+++|+.++++......+|..++|.+.+.. ..++...+.+.++..++..
T Consensus 92 ~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~ 171 (382)
T PRK10091 92 LMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVL 171 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHH
Confidence 33344444555555555566677888999999999999999888889998888887632 2344556666666554444
Q ss_pred HH-HhhccCCC
Q 040646 474 LF-VIGLPETR 483 (509)
Q Consensus 474 ~~-~~~~~~~~ 483 (509)
+. ..++||.+
T Consensus 172 ~~~~~~lp~~~ 182 (382)
T PRK10091 172 ASIYFWVPDIR 182 (382)
T ss_pred HHHHHhCCCCC
Confidence 33 34566643
No 161
>TIGR00887 2A0109 phosphate:H+ symporter. This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).
Probab=99.10 E-value=2.2e-09 Score=108.63 Aligned_cols=136 Identities=14% Similarity=0.162 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN----MWIYSVLRFINGFGRATIGTCAIVLSTEL 189 (509)
Q Consensus 114 s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~----~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 189 (509)
....++..++.++.++++|| +|||++++++..+.+++.++.++..+ ...+...-+...++.....+....+.+|.
T Consensus 342 ~~~~~~~i~g~~~~~~l~dr-~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~ 420 (502)
T TIGR00887 342 IIALAGTVPGYWVTVFLVDI-IGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEV 420 (502)
T ss_pred HHHHHHHHHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhcc
Confidence 34455667788899999999 99999998888887777666654321 11111111111222222345566778999
Q ss_pred ccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC----------CcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 190 VGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG----------SSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~----------~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
+|.+.|+++.++.+....+|.+++|.+ +++.+. .++...|++.++..++..+ ..+++||+.
T Consensus 421 ~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i-~~~~lpEt~ 492 (502)
T TIGR00887 421 FPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGIL-FTLLIPETK 492 (502)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHH-HheEeccCC
Confidence 999999999999999999999999987 666552 3456677777777776544 457889974
No 162
>PRK11646 multidrug resistance protein MdtH; Provisional
Probab=99.09 E-value=9.4e-09 Score=100.70 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhHhhhccccc-cccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH
Q 040646 314 LSAIMVTGFGIGMVYYGMPLG-LGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV 389 (509)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~ 389 (509)
+...++..++....+..++.+ .++.|.+....+.+.+ +...+..++.|+++||+|||+.+..+..+.+++.+.+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~ 95 (400)
T PRK11646 16 LIDNMLVVLGFFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI 95 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence 444445555555545444443 4667888777666555 444556788999999999999999999988888877766
Q ss_pred hccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh-cccchhHHHHHHHH
Q 040646 390 MGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG-RQNNFLSYGIFGLV 468 (509)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~-~~~~~~~~~~~~~~ 468 (509)
.+ +.+......++.+++.+...+...++..|.+|+++|+++.|+.+....+|..++|.+.+.. ..+....+.+.++.
T Consensus 96 ~~--~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~ 173 (400)
T PRK11646 96 AH--EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVL 173 (400)
T ss_pred hc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33 2333333334444455555567778889999999999999999999999999999988733 33344555555555
Q ss_pred HHHHHHH-HhhccC
Q 040646 469 IGLCGLF-VIGLPE 481 (509)
Q Consensus 469 ~~~~~~~-~~~~~~ 481 (509)
.++..++ .+..|+
T Consensus 174 ~~~~~i~~~~~~~~ 187 (400)
T PRK11646 174 FVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHhCCc
Confidence 4444433 234454
No 163
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=99.09 E-value=1.9e-09 Score=100.20 Aligned_cols=152 Identities=11% Similarity=0.025 Sum_probs=119.9
Q ss_pred hhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
....|.+.++.+++....+.+ ..+..-++-++.|.++||.+.|..+..+++++++..+++.+.+ +.....++..+
T Consensus 49 ~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~--s~~~~~~l~~l 126 (448)
T COG2271 49 NLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSP--SLFLFAVLWVL 126 (448)
T ss_pred hhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhh--HHHHHHHHHHH
Confidence 344677888888886665544 4466678999999999999999999999999999999998843 45555666677
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH--Hh--hcccchhHHHHHHHHHHHHHHHHh-hc
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV--AA--GRQNNFLSYGIFGLVIGLCGLFVI-GL 479 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~ 479 (509)
.+.+.+..+|.+...+..-+|++.||+..++-|+..++|+.+.|.+. +. ...+....|++-++++++.+++.+ ..
T Consensus 127 ng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~ 206 (448)
T COG2271 127 NGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLL 206 (448)
T ss_pred HHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 77888888999999999999999999999999999999999988888 52 223555667777777766666654 44
Q ss_pred cC
Q 040646 480 PE 481 (509)
Q Consensus 480 ~~ 481 (509)
++
T Consensus 207 rd 208 (448)
T COG2271 207 RD 208 (448)
T ss_pred CC
Confidence 43
No 164
>TIGR00895 2A0115 benzoate transport.
Probab=99.08 E-value=4e-09 Score=103.45 Aligned_cols=155 Identities=16% Similarity=0.077 Sum_probs=106.6
Q ss_pred HhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHH
Q 040646 326 MVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLE 402 (509)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (509)
...+..|.+.++.|.+...... ...++.+++.++.|+++||+|||+.+..+.++..++.++..... +.+......
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 112 (398)
T TIGR00895 35 AMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALAT--NVTQLLILR 112 (398)
T ss_pred HHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHcc--chHHHHHHH
Confidence 3445567777888877655443 34467788899999999999999999988888777776666532 233333334
Q ss_pred HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-Hhhc
Q 040646 403 LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGL 479 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ 479 (509)
++.+++.+...+...++..|.+|++.|+++.++.+....+|..++|.+.+.. ..+....+.+.+++.++..++ ..++
T Consensus 113 ~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 192 (398)
T TIGR00895 113 FLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFL 192 (398)
T ss_pred HHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhC
Confidence 4444555566778889999999999999999999999999999999888732 223334444444333333333 3455
Q ss_pred cCC
Q 040646 480 PET 482 (509)
Q Consensus 480 ~~~ 482 (509)
|++
T Consensus 193 ~~~ 195 (398)
T TIGR00895 193 PES 195 (398)
T ss_pred CCC
Confidence 554
No 165
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=99.08 E-value=1.6e-09 Score=108.10 Aligned_cols=145 Identities=20% Similarity=0.255 Sum_probs=128.0
Q ss_pred Cccee-eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 92 HTSII-SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 92 ~~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
+|.+. +++|. ++...|++.+++.+|..+|+++.+++.+| +++++.+..+.++++++.+..+++++.+..++.-++
T Consensus 241 lPl~a~~~l~~---~a~~yGll~a~~gvGai~Gal~~~~l~~~-~~~~~lv~~~~~~~a~~~~~lal~~~~~~~~~~l~l 316 (524)
T PF05977_consen 241 LPLFARDVLGG---GASGYGLLLAAFGVGAILGALLLPRLRRR-LSSRRLVLLASLLFALALLLLALSPSFWLALIALFL 316 (524)
T ss_pred hhHHHHHHhCC---cHHHHHHHHHHHHHHHHHHHHHHHHhhcc-cCcchhhHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 34443 46777 45589999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~ 240 (509)
.|++.....+...+.+.+..|++.|||+++++.+....+..+|.++ |.+.+..|-+..+.+.++..++..
T Consensus 317 ~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 317 AGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSA 387 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 9999999888889999999999999999999999999999999988 778888899999888776555443
No 166
>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional
Probab=99.08 E-value=9.2e-09 Score=102.62 Aligned_cols=153 Identities=11% Similarity=-0.034 Sum_probs=99.3
Q ss_pred hccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHH
Q 040646 329 YGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK--IWTSVEIGLEL 403 (509)
Q Consensus 329 ~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 403 (509)
+..|++.++ +.+...... ...++..++.++.|+++||+|||+++..+.++.+++.+.+.+... .+....+...+
T Consensus 50 ~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 128 (452)
T PRK11273 50 LAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLF 128 (452)
T ss_pred HhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 345666665 777655443 344777788999999999999999999998888887776665421 12223333334
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhH-HHHHHHH-h-hcccchhHHHHHHHHHHHHHHH-Hhhc
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGV-FSPVLVA-A-GRQNNFLSYGIFGLVIGLCGLF-VIGL 479 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~-i~p~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~~ 479 (509)
+.+++.+..++.......|.+|++.|+++.|+.+....+|+. .+|.+.. . ...++...+.+.+++.++..++ .+++
T Consensus 129 l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~ 208 (452)
T PRK11273 129 LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMM 208 (452)
T ss_pred HHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHc
Confidence 444455555566667778899999999999999888888864 4555432 1 1224445566665555544333 3455
Q ss_pred cCC
Q 040646 480 PET 482 (509)
Q Consensus 480 ~~~ 482 (509)
+|+
T Consensus 209 ~~~ 211 (452)
T PRK11273 209 RDT 211 (452)
T ss_pred cCC
Confidence 554
No 167
>TIGR00712 glpT glycerol-3-phosphate transporter. This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.
Probab=99.07 E-value=3.4e-09 Score=105.29 Aligned_cols=152 Identities=13% Similarity=0.024 Sum_probs=99.5
Q ss_pred ccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK--IWTSVEIGLELV 404 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 404 (509)
..|...+ .|.+...... ...++..++.++.|+++||+|||+.+..+.++.+++.+.+...+. .+........++
T Consensus 49 ~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 127 (438)
T TIGR00712 49 AMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFL 127 (438)
T ss_pred hhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence 3455444 4777655443 344677788899999999999999988888777777666554321 122222222333
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh-h--cccchhHHHHHHHHHHHHHHH-Hhhcc
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA-G--RQNNFLSYGIFGLVIGLCGLF-VIGLP 480 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~~~~~ 480 (509)
.+++.+..++.....+.|.+|+++|++++++.+....+|+.++|.+.+. . ..++...+.+.+++.++..+. .++++
T Consensus 128 ~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~ 207 (438)
T TIGR00712 128 NGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMR 207 (438)
T ss_pred HHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444455556667788899999999999999999999999888876552 1 223455666666665554433 34455
Q ss_pred CC
Q 040646 481 ET 482 (509)
Q Consensus 481 ~~ 482 (509)
|+
T Consensus 208 ~~ 209 (438)
T TIGR00712 208 DT 209 (438)
T ss_pred CC
Confidence 43
No 168
>TIGR00882 2A0105 oligosaccharide:H+ symporter.
Probab=99.06 E-value=2e-09 Score=105.49 Aligned_cols=135 Identities=15% Similarity=0.174 Sum_probs=114.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLST 187 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 187 (509)
..|.+.+...+...++.+..|++.|| +|||+.+.++.++.+++..+...+++.+.+++.+++.|++.+........++.
T Consensus 255 ~~g~~~~~~~i~~~~~~~~~g~l~~r-~g~~~~l~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 333 (396)
T TIGR00882 255 VFGYVTTMGELLNALIMFCAPLIINR-IGAKNALLIAGTIMSVRIIGSSFATTALEVVILKMLHAFEVPFLLVGCFKYIT 333 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888888888999999999999999 99999999999999988888788889998999999999997776666667777
Q ss_pred eeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646 188 ELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 188 e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~ 243 (509)
+..+++.++...+. ++....+|..+++.+ |++.+..||+..|.+.++..++..+..
T Consensus 334 ~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 334 SQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 77888888777766 677889999999988 678888899999999888887765443
No 169
>PRK12307 putative sialic acid transporter; Provisional
Probab=99.05 E-value=5.3e-09 Score=103.72 Aligned_cols=128 Identities=13% Similarity=0.141 Sum_probs=96.9
Q ss_pred HhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646 324 IGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
.....+..|.+.++.+.+..... ....++..++.++.|+++||+|||+.+..+.++.+++.+...+.. +.+....
T Consensus 34 ~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~ 111 (426)
T PRK12307 34 FMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLAS--GVIMLTL 111 (426)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 33445556676777887755443 344577788999999999999999999999988888877766633 3333444
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.-++.+++.+..++....+..|.+|+++|+++.++......+|.+++|.+.+.
T Consensus 112 ~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~ 164 (426)
T PRK12307 112 SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPS 164 (426)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHH
Confidence 44555566666777888899999999999999999999889999998887763
No 170
>PRK11102 bicyclomycin/multidrug efflux system; Provisional
Probab=99.05 E-value=8e-09 Score=100.62 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=105.8
Q ss_pred cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+|.+.++++.+..... ....++..++.++.|++.||+|||+.+..+.++.+++...+.... +........++.++
T Consensus 14 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~l~g~ 91 (377)
T PRK11102 14 LPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ--TIDQLIYMRFLHGL 91 (377)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHH
Confidence 4555667777765544 344467788899999999999999999999888888877776643 23333333444445
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-HhhccCC
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGLPET 482 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 482 (509)
+.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+.. ..+....+.+.+.+.++..+. .+..+|+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 92 AAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 55556667788999999999999999999999999999999887732 224445566655555554444 3455654
No 171
>PRK09705 cynX putative cyanate transporter; Provisional
Probab=99.05 E-value=1.1e-09 Score=107.00 Aligned_cols=153 Identities=13% Similarity=0.101 Sum_probs=116.4
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHH
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-NMWIYSVLRFIN 171 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~ 171 (509)
|.+.+++|. +..+.|...+.+.++..++.++.|++.|| +|||+.+..+..+..++..+....+ +...+ .-++.
T Consensus 229 p~~l~~~g~---s~~~ag~~~~~~~i~~i~g~~~~g~l~~r-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~ 302 (393)
T PRK09705 229 PAFYIEIGA---SAQYSGSLLALMTLGQAAGALLMPAMARH-QDRRKLLMLALVLQLVGFCGFIWLPLQLPVL--WAMVC 302 (393)
T ss_pred HHHHHHcCC---ChhhhhHHHHHHHHHHHHHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHHccchHHHH--HHHHH
Confidence 444456777 44478999999999999999999999999 9999999888887777766554333 22222 23456
Q ss_pred hhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHHHhheeec
Q 040646 172 GFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCILVRFLVR 248 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~ 248 (509)
|++.+...+.......+..+ +++|++..++.+....++..++|.+ +++.+..| |+..|++.++.+++..+....+.|
T Consensus 303 g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (393)
T PRK09705 303 GLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAP 382 (393)
T ss_pred HHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhcc
Confidence 88888777777666667664 5789999999999999999999988 67776654 788888877777776666667778
Q ss_pred Cch
Q 040646 249 ESP 251 (509)
Q Consensus 249 esp 251 (509)
|++
T Consensus 383 ~~~ 385 (393)
T PRK09705 383 ARF 385 (393)
T ss_pred ccc
Confidence 764
No 172
>PRK11128 putative 3-phenylpropionic acid transporter; Provisional
Probab=99.05 E-value=2.5e-09 Score=104.29 Aligned_cols=136 Identities=9% Similarity=-0.024 Sum_probs=112.3
Q ss_pred eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 040646 97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRA 176 (509)
Q Consensus 97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g 176 (509)
+|.|. +..+.|.+.+...++..+..++.|++.|| +|+|+.+..+.++.+++.++.+++++.+.+++..++.|++.+
T Consensus 233 ~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 308 (382)
T PRK11128 233 QAAGY---SASTIGYLWSLGVVAEVLIFAFSNRLFRR-WSARDLLLLSAICGVVRWGLMGSTTALPWLIVIQILHCGTFT 308 (382)
T ss_pred HHCCC---CHhHHHHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 45677 34468889898889999999999999999 999999999999999988888889999999999999999999
Q ss_pred hhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHH
Q 040646 177 TIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTIL 238 (509)
Q Consensus 177 ~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~ 238 (509)
...+....++.+. +++++++..+.++ ....+|..++|.+ |.+.+..|+ ..++..++..++
T Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~ 370 (382)
T PRK11128 309 VCHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP 370 (382)
T ss_pred HHHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence 9888888888886 5666788888876 5567788899998 577777777 456655555544
No 173
>TIGR00898 2A0119 cation transport protein.
Probab=99.04 E-value=4.2e-09 Score=106.87 Aligned_cols=148 Identities=17% Similarity=0.116 Sum_probs=108.4
Q ss_pred ccccccCCch---HH---HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646 332 PLGLGSLSFN---LY---LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 332 ~~~~~~~g~~---~~---~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
+...++.+.+ .. ....+..++.+++.++.|+++||+|||+.+..+.++..++.++..+.+ +.+......++.
T Consensus 113 ~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~r~l~ 190 (505)
T TIGR00898 113 STIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSP--NYTVFLVFRLLV 190 (505)
T ss_pred ccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHH
Confidence 4455566665 33 344555688889999999999999999999998888888777766633 344444445556
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPET 482 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (509)
+++.+...+....++.|.+|+++|+.+.++......+|.+++|.+...... +...+.+.++..++..+..+++||+
T Consensus 191 G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~-wr~~~~~~~i~~~~~~~~~~~~~es 266 (505)
T TIGR00898 191 GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD-WRWLQLAVSLPTFLFFLLSWFVPES 266 (505)
T ss_pred HhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 666667778889999999999999999999988889999998888764333 4455666666555555555667764
No 174
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=99.04 E-value=9.2e-09 Score=103.12 Aligned_cols=147 Identities=12% Similarity=0.059 Sum_probs=94.4
Q ss_pred cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
.|.+.+++|.+..... ....++..++.++.|+++||+|||+.+..+.++.+++.++..+..+ ........++.++
T Consensus 59 ~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s--~~~l~~~r~l~G~ 136 (476)
T PLN00028 59 LPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSS--ATGFIAVRFFIGF 136 (476)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHH
Confidence 4566777888655443 3334667788899999999999999998888777777666665332 2222222233333
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH----h-h------cccchhHHHHHHHHHHHHHHHH
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA----A-G------RQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~----~-~------~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
+.+.. .....++.|.+|+++|+.++|+.+....+|..+++.+.. . . ..++...+.+.+++.++..++.
T Consensus 137 ~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~ 215 (476)
T PLN00028 137 SLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILV 215 (476)
T ss_pred HHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 33332 334456789999999999999998776666665544432 1 1 1245566777777666555554
Q ss_pred hhcc
Q 040646 477 IGLP 480 (509)
Q Consensus 477 ~~~~ 480 (509)
++++
T Consensus 216 ~~~~ 219 (476)
T PLN00028 216 LTLG 219 (476)
T ss_pred HHHc
Confidence 4444
No 175
>PRK03893 putative sialic acid transporter; Provisional
Probab=99.04 E-value=1e-08 Score=103.93 Aligned_cols=125 Identities=13% Similarity=0.130 Sum_probs=94.6
Q ss_pred hhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Q 040646 327 VYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLEL 403 (509)
Q Consensus 327 ~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (509)
.....|.+.++++.+..... ....++..++.++.|++.||+|||+.+..+.++.+++.+.+.+.. +.+......+
T Consensus 39 ~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 116 (496)
T PRK03893 39 ITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAP--GYWTLFIARL 116 (496)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHH
Confidence 33445666677887765543 334467778899999999999999999988888888777766632 3333344444
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
+.+++.+..++....+..|.+|++.|+.+.++......+|..++|.+.+.
T Consensus 117 l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~ 166 (496)
T PRK03893 117 VIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSL 166 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555566677788899999999999999999999999999999988873
No 176
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=99.04 E-value=1.2e-07 Score=89.77 Aligned_cols=323 Identities=12% Similarity=0.031 Sum_probs=169.3
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
.+.+.-+-.+...+.-+.+.++.+| +..+.=.....++..++.++.++++|.+.=+++-++.+++.|........+..
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~-v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~- 138 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHR-VPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTH- 138 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhh-ccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 3556666666777777788888898 77555556666778889999999999999999999999999998888888644
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcc--hHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHH
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSW--RRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSI 266 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~w--r~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~ 266 (509)
.+++ ...+-+..|.+.+.++|+..-..+...++ |..+++...+.++..+..++.+|.++.. ...++.
T Consensus 139 ~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~~~~----~~~~~~--- 207 (402)
T PF02487_consen 139 FYGK----SSLSAWSSGTGGAGLVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSPPTN----RPYQES--- 207 (402)
T ss_pred hcCc----cccccccCCcChhhHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhcccccc----CCCccc---
Confidence 4543 35778888888888888887433322444 7777777766655554445555543210 000000
Q ss_pred HHHHHhhcCCccccccccCcccccccccccchhHHHHHHh-chHHHHHHHHHHHHHHHHhHhhhcc-c-cccccCCchHH
Q 040646 267 IKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVE-KKWALRRLSAIMVTGFGIGMVYYGM-P-LGLGSLSFNLY 343 (509)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~g~~~~ 343 (509)
+.+++.+++..+.+.+.++.+...+.+.++-++ -+...+.++-.++.++....+..++ + ..+.....+..
T Consensus 208 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~k~Ll~ymiPL~lVY~aEY~InqGv~~tl~fp~~~~~~r 280 (402)
T PF02487_consen 208 -------ESEDEAEDDLLESETSESKPDSSSKLSFKEKLKRLKPLLWYMIPLFLVYFAEYFINQGVAPTLLFPNSFFSPR 280 (402)
T ss_pred -------CCCCcccccccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHhcCCccCCCHH
Confidence 000000000000000000111111112222111 1222223334444555444443332 1 12222222222
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH---h-ccchhHHHHHHHHHHHHHHHHHhHHHHhh
Q 040646 344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV---M-GKIWTSVEIGLELVAFFSACTAFSLLLIY 419 (509)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (509)
...-..++..=+|.+++---...+.-|++.+.. ++..+-++++.+ . ..++.+..+.+.+.-+...+..+...+..
T Consensus 281 ~~Y~~Y~~~YQ~GVFISRSS~~~~rir~lwils-~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~ 359 (402)
T PF02487_consen 281 DQYRWYQLLYQLGVFISRSSLPFFRIRRLWILS-LLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFYR 359 (402)
T ss_pred HHHHHHHHHHHHHHhhhhcceeeeehhhHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 222222222223333332111222223332222 222222222111 1 11223333344444445556666666777
Q ss_pred cccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 420 TLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 420 ~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
+.|..|+++|..++|.......+|..++.++.-
T Consensus 360 I~~~~~~~~REFslg~vsvsds~GI~lAgll~l 392 (402)
T PF02487_consen 360 ISEEVPPEDREFSLGAVSVSDSLGILLAGLLGL 392 (402)
T ss_pred HHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 788889999999999999888888877776653
No 177
>PRK09952 shikimate transporter; Provisional
Probab=99.04 E-value=3.7e-09 Score=104.91 Aligned_cols=150 Identities=16% Similarity=0.181 Sum_probs=103.7
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHH
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----TNMWIYSVLRFIN 171 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~l~~~r~l~ 171 (509)
++++|.+.+ ....+.....+...++.++.|+++|| +|||+++..+.++..++.+..... ++.+.+++..++.
T Consensus 278 ~~~~g~s~~---~~~~~~~~~g~~~~i~~~~~g~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (438)
T PRK09952 278 TQNLGLPRE---LFLNIGLLVGGLSCLTIPCFAWLADR-FGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLA 353 (438)
T ss_pred HHhcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 345666322 33344445566677888999999999 999999988877665554433221 2344555566777
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcC--CcchHHHHHHHhhHHHHHHHhheee
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRG--SSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~--~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
|++.+...+...+++.|.+|++.|+...++.. .+..+|..++|.+ +++.+. .+|+..+.+.++..++..+. .+.+
T Consensus 354 ~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~ 432 (438)
T PRK09952 354 NIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLM 432 (438)
T ss_pred HHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHc
Confidence 88888888888899999999999998888854 4455888888888 566553 35888888777777665433 3445
Q ss_pred cCc
Q 040646 248 RES 250 (509)
Q Consensus 248 ~es 250 (509)
+|+
T Consensus 433 ~~~ 435 (438)
T PRK09952 433 KDN 435 (438)
T ss_pred ccc
Confidence 654
No 178
>PRK10504 putative transporter; Provisional
Probab=99.03 E-value=1.4e-08 Score=101.99 Aligned_cols=152 Identities=11% Similarity=0.015 Sum_probs=106.5
Q ss_pred HHHhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646 322 FGIGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVE 398 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
+.........|.+.+++|.+..... ....++..++.++.|+++||+|||+.+..+..+..++.+...+. ++....
T Consensus 24 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l 101 (471)
T PRK10504 24 LDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--GTLNEL 101 (471)
T ss_pred HhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh--CCHHHH
Confidence 3344445567888888888866543 33346667888999999999999999988877777776665553 233333
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH
Q 040646 399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF 475 (509)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 475 (509)
+...++.+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+.. ..++.+.|.+......+..+.
T Consensus 102 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~ 180 (471)
T PRK10504 102 LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIA 180 (471)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 44445555666666777888899999999999999999999999999999988732 233344555554444444443
No 179
>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial. The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.
Probab=99.03 E-value=4.1e-09 Score=105.27 Aligned_cols=155 Identities=8% Similarity=0.003 Sum_probs=102.8
Q ss_pred HHHhHhhhcccccccc---CCchHHHHHHH---HHhhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccch
Q 040646 322 FGIGMVYYGMPLGLGS---LSFNLYLSVTF---NALSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIW 394 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~---~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (509)
++.......++.++++ +|.+......+ ..+...++.+++|+++|| +|||+++..+.++.+++.+++.+.. +
T Consensus 24 ~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~--~ 101 (475)
T TIGR00924 24 FSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSI--Y 101 (475)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcc--c
Confidence 4444444445666543 67776555433 446778899999999999 8999999999998888877776633 2
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhh---hhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHH
Q 040646 395 TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCV---RNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVI 469 (509)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~ 469 (509)
.........+.+++.+...+...++..+.+|++. |+++.++.+...++|..++|.+.+... .++...|.+.++..
T Consensus 102 ~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~ 181 (475)
T TIGR00924 102 PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGM 181 (475)
T ss_pred HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 2222222233334444555677788888888653 888999999999999999999988432 24455565555544
Q ss_pred HHHHHHHhh
Q 040646 470 GLCGLFVIG 478 (509)
Q Consensus 470 ~~~~~~~~~ 478 (509)
+++.+..++
T Consensus 182 ~~~~l~~~~ 190 (475)
T TIGR00924 182 VIGLLTFFA 190 (475)
T ss_pred HHHHHHHHH
Confidence 444443333
No 180
>PRK15403 multidrug efflux system protein MdtM; Provisional
Probab=99.03 E-value=2.2e-08 Score=98.59 Aligned_cols=152 Identities=10% Similarity=0.078 Sum_probs=103.6
Q ss_pred cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+|...++++.+..... .+..++..++.++.|+++||+|||+++..+..+..++.++..... +....+..-++.++
T Consensus 39 l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--~~~~l~~~r~l~Gi 116 (413)
T PRK15403 39 IINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--SMTQFLIARFIQGT 116 (413)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 3445556666654433 334477778899999999999999999998888888777766633 33333333344444
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH-hhccCCCC
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV-IGLPETRD 484 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 484 (509)
+.+...+....+..|.+|++.+++++++.+....+|..++|.+.+.. ..++...|.+.++..++..+.. +.+||+++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 117 SICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 44444455667888999999999999999999999999998887732 2345566666666665555443 45677543
No 181
>PRK15402 multidrug efflux system translocase MdfA; Provisional
Probab=99.02 E-value=3e-08 Score=97.57 Aligned_cols=151 Identities=11% Similarity=0.016 Sum_probs=102.3
Q ss_pred cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
++.+.++++.+..... ....++..++.++.|.++||+|||+.+..+..+..++.+.....+ +.+..+...++.+.
T Consensus 36 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~ 113 (406)
T PRK15402 36 MLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ--SIEQFTLLRFLQGI 113 (406)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHh
Confidence 4555677777765543 344467778889999999999999999988888777777666533 23333333344444
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFV-IGLPETR 483 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 483 (509)
+.+...+.......|.+|++.|.++.++......++..++|.+.+. ...++...+.+.+++.++..+.. ...||++
T Consensus 114 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 114 GLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 4445556677888899999999999998888878888888888763 22344455666666555554433 3456554
No 182
>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.
Probab=99.00 E-value=1.1e-08 Score=103.42 Aligned_cols=159 Identities=17% Similarity=0.127 Sum_probs=112.0
Q ss_pred HHHhHhhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646 322 FGIGMVYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVE 398 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
+.........|.+.+++|.+.... .....++..++.++.|++.||+|||+.+..+.++..++.++....+ +....
T Consensus 16 ~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l 93 (485)
T TIGR00711 16 LDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAP--NLELM 93 (485)
T ss_pred HHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcC--CHHHH
Confidence 334445556677888888765443 4445578888999999999999999999999888888877766533 33344
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH
Q 040646 399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 476 (509)
+...++.+++.+...+....++.|.+|++.|+++.++......+|..++|.+.+... .++.+.+.+.+.+.++..++.
T Consensus 94 ~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~ 173 (485)
T TIGR00711 94 IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA 173 (485)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence 444455556666667788899999999999999999999999999999998887332 234444555444444443333
Q ss_pred -hhccCC
Q 040646 477 -IGLPET 482 (509)
Q Consensus 477 -~~~~~~ 482 (509)
++.|++
T Consensus 174 ~~~~~~~ 180 (485)
T TIGR00711 174 FFILPRD 180 (485)
T ss_pred HHHcCCc
Confidence 345543
No 183
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=99.00 E-value=1.2e-09 Score=106.23 Aligned_cols=152 Identities=10% Similarity=-0.010 Sum_probs=105.2
Q ss_pred hhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 328 YYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 328 ~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
....|.+.+++|.+...... ...++..++.++.|+++||+|||+.+..+..+..++.++..+.. +.+......++
T Consensus 15 ~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 92 (379)
T TIGR00881 15 ALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFST--SLWVMAALWAL 92 (379)
T ss_pred hhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhh--hHHHHHHHHHH
Confidence 34456666777777655443 44477778899999999999999999999888888877776643 33333344444
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH-HHHh--hcccchhHHHHHHHHHHHHHHHH-hhcc
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV-LVAA--GRQNNFLSYGIFGLVIGLCGLFV-IGLP 480 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 480 (509)
.+++.+...+...++..|.+|+++|+.+.++.+....+|..++|. +... ...+....+.+.+++.++..++. ++.+
T Consensus 93 ~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (379)
T TIGR00881 93 NGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLR 172 (379)
T ss_pred HHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeC
Confidence 455555666778889999999999999999999999999999984 4332 22334445555555554444433 3444
Q ss_pred C
Q 040646 481 E 481 (509)
Q Consensus 481 ~ 481 (509)
+
T Consensus 173 ~ 173 (379)
T TIGR00881 173 D 173 (379)
T ss_pred C
Confidence 4
No 184
>PRK03699 putative transporter; Provisional
Probab=99.00 E-value=2.6e-08 Score=97.51 Aligned_cols=143 Identities=12% Similarity=0.033 Sum_probs=100.0
Q ss_pred cccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+|.+.++++.+...... ...++..++.++.|++.||+|||+.+..+..+..++.++..+. ++.+......++.++
T Consensus 30 ~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~l~G~ 107 (394)
T PRK03699 30 MGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS--HSLALFSIAMFVLGV 107 (394)
T ss_pred hHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc--chHHHHHHHHHHHHH
Confidence 45566777777655443 3447778899999999999999999998888877777766663 233333333444445
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHHHHHHHHHHHHHHH
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSYGIFGLVIGLCGLF 475 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 475 (509)
+.+...+....++.|.+|++.|+.+.+..+....+|+.++|.+.+.. ..++...+.+.+++.++..++
T Consensus 108 ~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~ 178 (394)
T PRK03699 108 VSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFIL 178 (394)
T ss_pred hhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 55555666778889999999999999988888888888888887622 234455666666555444443
No 185
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=99.00 E-value=3.7e-09 Score=100.85 Aligned_cols=170 Identities=14% Similarity=0.132 Sum_probs=112.9
Q ss_pred HHHhchHHHHHHHHHHHHHHHHhHhhhccccccccCCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHH
Q 040646 303 ILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIM 379 (509)
Q Consensus 303 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~ 379 (509)
+++.++.....+....++.++...+.+.+-..+++.+...... ..+.-.+.++.-++.+++.+|+|+-+++..++.+
T Consensus 366 ~~~~s~~~llff~~av~mG~g~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~ 445 (618)
T KOG3762|consen 366 KVFASPHILLFFFVAVVMGAGVGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLAC 445 (618)
T ss_pred HHhcCCCEEehhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhH
Confidence 5566665444455555555555555555544556655443332 3333467788888999999999999999999888
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH-hHhhHHHHHHHHh--hcc
Q 040646 380 SGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL-VFGGVFSPVLVAA--GRQ 456 (509)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~-~~g~~i~p~~~~~--~~~ 456 (509)
..+-++.+.... ++|..+.+-++-+...+..|....+|++...|++.+++++++..... .+|-.+|.++.+. ...
T Consensus 446 ~~~Rf~~~S~L~--n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~f 523 (618)
T KOG3762|consen 446 NVGRFLYYSYLQ--NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERF 523 (618)
T ss_pred HHHHHHHHHHhc--CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheee
Confidence 888877777744 45555566677777788888999999999999999999999987764 4444455555441 123
Q ss_pred cchhHHHHHHHHHHHHHH
Q 040646 457 NNFLSYGIFGLVIGLCGL 474 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~ 474 (509)
+....|-++++.+++..+
T Consensus 524 g~~ttf~~~giAcl~~l~ 541 (618)
T KOG3762|consen 524 GARTTFRIFGIACLVTLA 541 (618)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 333445555554444433
No 186
>PRK11043 putative transporter; Provisional
Probab=98.99 E-value=4.5e-08 Score=96.19 Aligned_cols=149 Identities=13% Similarity=0.033 Sum_probs=98.8
Q ss_pred ccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 040646 332 PLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFS 408 (509)
Q Consensus 332 ~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (509)
|.+.++.+.+......+ ..++..++.++.|+++||+|||+.+..+..+..++.+...+.. +.+......++.+++
T Consensus 30 ~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~l~G~~ 107 (401)
T PRK11043 30 KAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--SAAQLLVLRFVQAVG 107 (401)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHhh
Confidence 33456677776655444 3466778999999999999999999988887777766666533 223333333333344
Q ss_pred HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646 409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGLPET 482 (509)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (509)
.+...+....+..|.+|++.++...+..+....++..++|.+.+.. ..++...+.+.++..++..+..+++++.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 108 VCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4444455667888999999888888888888888888888887732 2344455555555555554444444443
No 187
>PRK15462 dipeptide/tripeptide permease D; Provisional
Probab=98.99 E-value=1.1e-08 Score=100.80 Aligned_cols=146 Identities=11% Similarity=0.062 Sum_probs=95.0
Q ss_pred cccccc-ccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 330 GMPLGL-GSLSFNLYLSVTFNA---LSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 330 ~~~~~~-~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
.++.++ +++|.+......+.+ +...++.+++|+++||+ |||+.+.++.++..++.+++............. ..+
T Consensus 31 ~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~-l~l 109 (493)
T PRK15462 31 LLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLS-LAI 109 (493)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHH
Confidence 344444 346777655544433 55667888999999999 999999999888888776554322111112211 112
Q ss_pred HHHHHHHHhHHHHhhcccccchh--hhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH
Q 040646 405 AFFSACTAFSLLLIYTLELFPTC--VRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 476 (509)
..++.+...+...++..|.+|++ .|.++.++.+...++|+.++|.+.+... .++...|.+.++..+++.+..
T Consensus 110 i~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~ 185 (493)
T PRK15462 110 IVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIF 185 (493)
T ss_pred HHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHH
Confidence 22333344455678899999975 6999999999999999999999998432 344555665554444444333
No 188
>PRK10406 alpha-ketoglutarate transporter; Provisional
Probab=98.97 E-value=5.7e-09 Score=103.48 Aligned_cols=141 Identities=8% Similarity=0.043 Sum_probs=87.3
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH--H--HhHHHHHHHHHHHH
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI--F--STNMWIYSVLRFIN 171 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~--~--~~~~~~l~~~r~l~ 171 (509)
.+++|.+ ..+.++..+...++..+++++.|+++|| +|||+.+.++.++.++...... . .++....+..-.+.
T Consensus 271 ~~~~g~s---~~~~~~~~~i~~~~~~i~~~~~G~l~Dr-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (432)
T PRK10406 271 VNTAGMH---ANVASGIMTAALFVFMLIQPLIGALSDK-IGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCA 346 (432)
T ss_pred HHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 4556763 3367788888888888999999999999 9999988776655443332221 1 12222222222223
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHH-HHHHHHHHHHHhcCCc-chHHHHHHHhhHHHHH
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTL-GFLSLPAIAYINRGSS-WRRIYLYTSIPTILYC 240 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~ 240 (509)
++..+...+....++.|++|++.|+.+.|+.+....+ +....|.+..+.+..| |...+++.++..++..
T Consensus 347 ~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l~~~g~~~~~~~~~~~~~~i~~ 417 (432)
T PRK10406 347 LLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSLKSIGMETAFFWYVTLMAVVAF 417 (432)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3333344455667889999999999999998765443 2334666643444445 5555555555555543
No 189
>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter.
Probab=98.96 E-value=2.5e-08 Score=99.99 Aligned_cols=142 Identities=12% Similarity=0.024 Sum_probs=100.5
Q ss_pred cCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 040646 337 SLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAF 413 (509)
Q Consensus 337 ~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (509)
+++.+....+ ....++.+++.++.|++.||+|||+.+..+.++..++.++..+.........+..-++.+++.+..+
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~ 149 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVS 149 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccch
Confidence 4556655544 3344778889999999999999999999888877777665543222222333344445556666777
Q ss_pred HHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--c-ccchhHHHHHHHHHHHHHHHHhh
Q 040646 414 SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--R-QNNFLSYGIFGLVIGLCGLFVIG 478 (509)
Q Consensus 414 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~ 478 (509)
+....+..|.+|++.|+++.++.+....+|..++|.+.+.. . .++...+.+.++..++..++.+.
T Consensus 150 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 150 PATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 88889999999999999999999999999999999888732 2 24555666666665555444433
No 190
>TIGR00880 2_A_01_02 Multidrug resistance protein.
Probab=98.96 E-value=3e-08 Score=81.25 Aligned_cols=126 Identities=17% Similarity=0.174 Sum_probs=91.1
Q ss_pred HhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhh
Q 040646 350 ALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVR 429 (509)
Q Consensus 350 ~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 429 (509)
.++.+++.++.+++.||+|||+.+..+.....++.+.+.... +.+......++.+++.+...+....+..|.+|++.|
T Consensus 8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (141)
T TIGR00880 8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS--NITVLIIARFLQGFGAAFALVAGAALIADIYPPEER 85 (141)
T ss_pred hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhh
Confidence 466778899999999999999999888877777766655532 233333334455555566667788899999999999
Q ss_pred hhHHHHHHHHHhHhhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHHHHh
Q 040646 430 NSAISMVRQALVFGGVFSPVLVAAGRQ--NNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 430 ~~~~g~~~~~~~~g~~i~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 477 (509)
+++.++.+....+|..++|.+.+.... +....+.+.+...++..+...
T Consensus 86 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (141)
T TIGR00880 86 GVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA 135 (141)
T ss_pred hHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999988884322 233455555555555544443
No 191
>TIGR00885 fucP L-fucose:H+ symporter permease. This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.
Probab=98.96 E-value=6e-08 Score=95.15 Aligned_cols=127 Identities=9% Similarity=0.023 Sum_probs=94.7
Q ss_pred HhhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc-cchhHHHHHH
Q 040646 326 MVYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG-KIWTSVEIGL 401 (509)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 401 (509)
...-..|.+.++.+.+......+ ..++.+++++..+++.||+|||+.+..+..+.+++.+++.... .++.+.....
T Consensus 21 ~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~ 100 (410)
T TIGR00885 21 ITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVG 100 (410)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 33344566777788876655443 4477888999999999999999999999998888876654422 2233334444
Q ss_pred HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.++.+++.+...+....+..+..|++.|++..++.+....+|..++|.+..
T Consensus 101 ~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~ 151 (410)
T TIGR00885 101 LFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQ 151 (410)
T ss_pred HHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666777777788888899999999999999999999998888776
No 192
>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions. Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.
Probab=98.96 E-value=5.1e-09 Score=103.41 Aligned_cols=151 Identities=16% Similarity=0.187 Sum_probs=123.9
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCch--HHHHHHHHHHHHHHHHHHH--------HhHHHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRK--NMLFLSCLMMSVSCLLTIF--------STNMWI 163 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr--~~l~~~~~~~~i~~~~~~~--------~~~~~~ 163 (509)
-..+++|++ ..+...+.-+..+...+|++++|++.|| +|.| +++..+++++.+..+...+ .++-+.
T Consensus 307 ~a~~~lg~s---~~~l~~~~l~~~i~a~~Ga~~~g~l~~r-~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~ 382 (477)
T PF11700_consen 307 YATEVLGMS---TTQLIVFGLVVQIVAIIGALLFGWLQDR-FGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWE 382 (477)
T ss_pred HHHHhcCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHH
Confidence 345588884 4467777778888899999999999999 9999 8999988888666666555 677888
Q ss_pred HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHH
Q 040646 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCI 241 (509)
Q Consensus 164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~ 241 (509)
+.+.-++.|+..|...+...++.+|..|+++.+..+|++....-....+||++ +.+.+..| -|+.+....++.++..
T Consensus 383 f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl- 461 (477)
T PF11700_consen 383 FWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGL- 461 (477)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH-
Confidence 99999999999999999999999999999999999999999999999999998 66655544 7888777666666643
Q ss_pred HhheeecC
Q 040646 242 LVRFLVRE 249 (509)
Q Consensus 242 ~~~~~~~e 249 (509)
+.+..+++
T Consensus 462 ~ll~~v~~ 469 (477)
T PF11700_consen 462 ILLFFVDV 469 (477)
T ss_pred HHHhhccc
Confidence 44455543
No 193
>PRK14995 methyl viologen resistance protein SmvA; Provisional
Probab=98.95 E-value=5.4e-08 Score=98.22 Aligned_cols=157 Identities=14% Similarity=-0.046 Sum_probs=107.2
Q ss_pred HhHhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHH
Q 040646 324 IGMVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIG 400 (509)
Q Consensus 324 ~~~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (509)
.+.....+|.+.++++.+..... ....++...+.+..|+++||+|||+.+..+..+..++.++....+ +.+..+.
T Consensus 22 ~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~--~~~~li~ 99 (495)
T PRK14995 22 ATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSP--TASWLIA 99 (495)
T ss_pred HHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcC--CHHHHHH
Confidence 34455557888888887654433 334466677788999999999999999999999888888777743 3333444
Q ss_pred HHHHHHHHHHHHhHHHHhhccccc-chhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH-
Q 040646 401 LELVAFFSACTAFSLLLIYTLELF-PTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV- 476 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~- 476 (509)
.-.+.+++.+...+.......+.+ |+++|+++.|+......+|..++|.+.+... .++.+.|.+...+.++..++.
T Consensus 100 ~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~ 179 (495)
T PRK14995 100 TRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTA 179 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHH
Confidence 444455555555565555555554 7889999999999999999999999988433 344555665555444444433
Q ss_pred hhccCC
Q 040646 477 IGLPET 482 (509)
Q Consensus 477 ~~~~~~ 482 (509)
+.+|+.
T Consensus 180 ~~l~~~ 185 (495)
T PRK14995 180 RYVPRQ 185 (495)
T ss_pred HhCCCC
Confidence 445554
No 194
>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []. The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.
Probab=98.95 E-value=3.4e-09 Score=100.81 Aligned_cols=145 Identities=17% Similarity=0.317 Sum_probs=122.4
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV 184 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 184 (509)
++...|.+.+...+.-++...+..++.+| +|.|+.++++..+..+=.++++++++.+.+.+.+.+.|+-.+........
T Consensus 257 g~~~~G~l~s~~v~~E~~~m~~~p~li~r-ig~k~~Lllag~i~~iRi~~~~~~~~~~~i~~~klLH~~e~~l~lva~fk 335 (412)
T PF01306_consen 257 GNQMYGYLWSVQVFLEALMMFFSPWLINR-IGAKNLLLLAGVIMAIRIIGSGFATNPWVISLIKLLHALEFPLLLVAAFK 335 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHhHHHHHHHHHHHHHHHHHHHHHHh-cChHhHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33468999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eeEeeccCcccchhhhhh-HHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 185 LSTELVGKKRRGQVGSIG-FFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 185 ~i~e~~~~~~r~~~~~~~-~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|+++.+|++..++...+. +...++|..+.+.+ |.+.++.|.+..|++.+.+.+...++..+.+++.
T Consensus 336 YI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 336 YITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--S
T ss_pred HHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCC
Confidence 999999988877777764 67788887776666 7888888999999999988887776666666543
No 195
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.94 E-value=3.8e-09 Score=93.94 Aligned_cols=153 Identities=18% Similarity=0.252 Sum_probs=115.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-------hHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-------TNMWIY 164 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-------~~~~~l 164 (509)
-|++++.+|+ ++.|...+.+...+|..+| ++.|.+.|+ +|+|.++.+|.+...+|..+...+ .++|.+
T Consensus 25 S~~Lk~~l~~---sq~~l~~l~~~~~~G~~~G-~~~G~l~d~-~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~ 99 (250)
T PF06813_consen 25 SPQLKSRLGY---SQSQLNTLSTAGDIGSYFG-ILAGLLYDR-FGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLM 99 (250)
T ss_pred hHHHHHHhCC---CHHHHHHHHHHHHHHhhcc-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHH
Confidence 5899999999 6668999999999999875 888999999 999999999999999988877653 357888
Q ss_pred HHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646 165 SVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 165 ~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~ 243 (509)
.+..++.|.+.+...........+.+| ++||++.|+.-...+++..+-..+ ..+.++..-+..+ +.+....++.+..
T Consensus 100 ~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~fll-~la~~~~~v~l~~ 177 (250)
T PF06813_consen 100 CLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSFLL-FLAVLPAVVCLVA 177 (250)
T ss_pred HHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHHHH
Confidence 888888888877777777666678887 689999999999999997776666 4444443334443 3343333334444
Q ss_pred heeecCch
Q 040646 244 RFLVRESP 251 (509)
Q Consensus 244 ~~~~~esp 251 (509)
..+++..|
T Consensus 178 ~~~vr~~~ 185 (250)
T PF06813_consen 178 MFFVRPVP 185 (250)
T ss_pred hhheeccC
Confidence 45555443
No 196
>PRK11652 emrD multidrug resistance protein D; Provisional
Probab=98.94 E-value=9.6e-08 Score=93.64 Aligned_cols=151 Identities=12% Similarity=0.004 Sum_probs=101.0
Q ss_pred cccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFF 407 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
+|.+.++.+.+..... ....++..++.++.|+++||+|||+.+..+..+..++.+.....+ +........++.++
T Consensus 31 ~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~ 108 (394)
T PRK11652 31 IADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAH--SLTVLIAASAIQGL 108 (394)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHc--cHHHHHHHHHHHHh
Confidence 4666677787765544 334467778889999999999999999988888777776665532 23333333344444
Q ss_pred HHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHH-HhhccCCC
Q 040646 408 SACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLF-VIGLPETR 483 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 483 (509)
+.+...+....+..|.++.+.++.+.+..+....++..++|.+.+... .++...+.+.++..++..+. .++.||++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 109 GTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 444444556677788889889999999988888888888888877322 33445555555544433333 34556643
No 197
>PRK11902 ampG muropeptide transporter; Reviewed
Probab=98.94 E-value=9.7e-08 Score=93.80 Aligned_cols=165 Identities=10% Similarity=0.012 Sum_probs=110.1
Q ss_pred HHHHHHhHhhhccccccccCCchHHHHHHHHHhh-hhhHHHHHHHHhhhc-----Cchh-HHHHHHHHHHHHHHHHHHhc
Q 040646 319 VTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALS-ELPASLITFFLIGKL-----KRKS-SLLGFTIMSGVCSVLCVVMG 391 (509)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~g~l~dr~-----gr~~-~~~~~~~~~~~~~~~~~~~~ 391 (509)
.......+....+|.++++.|.+....+.+..+. -.+..++.|.++||+ |||+ .+..+..+.+++...+.+..
T Consensus 10 ~~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~ 89 (402)
T PRK11902 10 ASGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQAYIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP 89 (402)
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence 3344455666678999999999987776554422 246778999999999 7765 67777777777766666643
Q ss_pred cch-hHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHH
Q 040646 392 KIW-TSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGL 467 (509)
Q Consensus 392 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~ 467 (509)
... .+....+.++..+......+...++..|..|+++|+++.++......+|..+++.+..... .++...+.+.++
T Consensus 90 ~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~ 169 (402)
T PRK11902 90 PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAG 169 (402)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHH
Confidence 322 2222323233334445555678899999999999999999999888888888887665222 245556666666
Q ss_pred HHHHHHHHHhhccCCC
Q 040646 468 VIGLCGLFVIGLPETR 483 (509)
Q Consensus 468 ~~~~~~~~~~~~~~~~ 483 (509)
+.++..+..+..||++
T Consensus 170 ~~l~~~l~~~~~~e~~ 185 (402)
T PRK11902 170 LMLAGALTTLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHhcCCCc
Confidence 6555444445556543
No 198
>PRK15075 citrate-proton symporter; Provisional
Probab=98.93 E-value=5.5e-09 Score=103.69 Aligned_cols=130 Identities=13% Similarity=0.050 Sum_probs=89.2
Q ss_pred ccee-eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHH-HH---HHhHHHHHHHH
Q 040646 93 TSII-SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLL-TI---FSTNMWIYSVL 167 (509)
Q Consensus 93 ~~i~-~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~-~~---~~~~~~~l~~~ 167 (509)
|.+. +.+|++ ..+.++....+.++..++.++.|+++|| +|||+++..+..+..+.... .. ..+++..+.+.
T Consensus 262 p~~l~~~~g~~---~~~~~~~~~~~~~~~~~~~~~~g~l~Dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (434)
T PRK15075 262 PTFGKTVLHLS---AADSLLVTLCVGVSNFIWLPIGGALSDR-IGRRPVLIAFTVLAILTAYPALSWLVAAPSFARMLAV 337 (434)
T ss_pred HHHHHHhcCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHH
Confidence 4433 346774 3356788888889999999999999999 99999887765544332221 11 12344444455
Q ss_pred HHHHhhccchhhhhheeeeEeeccCcccchhhhhhH-HHHHHHHHHHHHH-HHHhcCCcch
Q 040646 168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGF-FCFTLGFLSLPAI-AYINRGSSWR 226 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~~~~~-~~~~~~~~wr 226 (509)
.++.|++.+...+....++.|.+|+++|+...++.. .+..++..++|.+ +++.+..|++
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 338 ELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 566666666666666678899999999999999854 4444556667777 6777776754
No 199
>PRK11010 ampG muropeptide transporter; Validated
Probab=98.93 E-value=1.7e-07 Score=94.25 Aligned_cols=164 Identities=12% Similarity=0.073 Sum_probs=109.0
Q ss_pred HHHHHhHhhhccccccccCCchHHHHHHHHHhhhh-hHHHHHHHHhhhc-----CchhH-HHHHHHHHHHHHHHHHHhcc
Q 040646 320 TGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSEL-PASLITFFLIGKL-----KRKSS-LLGFTIMSGVCSVLCVVMGK 392 (509)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~g~l~dr~-----gr~~~-~~~~~~~~~~~~~~~~~~~~ 392 (509)
...........+|.++++.|.+......+..++.. ++.++.+.++||+ |||+. +..+.+..+++...+.+...
T Consensus 24 ~gl~~~~~~~~l~~~l~~~g~~~~~ig~~~~~~~~~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~ 103 (491)
T PRK11010 24 SGLPLALTSGTLQAWMTVENIDLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEP 103 (491)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 33344444555677888888887666655333222 6889999999999 98885 55666666666666655432
Q ss_pred -chhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc---ccchhHHHHHHHH
Q 040646 393 -IWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR---QNNFLSYGIFGLV 468 (509)
Q Consensus 393 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~---~~~~~~~~~~~~~ 468 (509)
.+.+......++..++.....+...++..|.+|+++|+.+.++......+|..+++.+..... .++...+.+.+++
T Consensus 104 ~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l 183 (491)
T PRK11010 104 GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAAL 183 (491)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHH
Confidence 223333333344444555555677899999999999999999999999999998887776322 2455667776766
Q ss_pred HHHHHHHHhhccCCC
Q 040646 469 IGLCGLFVIGLPETR 483 (509)
Q Consensus 469 ~~~~~~~~~~~~~~~ 483 (509)
.++..+..++.||+.
T Consensus 184 ~ll~~l~~~~~~e~~ 198 (491)
T PRK11010 184 LIPCIIATLLAPEPT 198 (491)
T ss_pred HHHHHHHHHhcCCCc
Confidence 665555545566653
No 200
>TIGR00903 2A0129 major facilitator 4 family protein. This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.
Probab=98.93 E-value=6.9e-08 Score=93.11 Aligned_cols=152 Identities=11% Similarity=-0.015 Sum_probs=97.0
Q ss_pred hccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646 329 YGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 329 ~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
..+|.+.++++.+....+.+ ..++..++.+..|+++||+|||+++.........+.. ..... ++....+..-++.
T Consensus 12 ~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~R~l~ 89 (368)
T TIGR00903 12 PVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLLDP-FNYEWLLACQLLA 89 (368)
T ss_pred hhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHh-ccHHHHHHHHHHH
Confidence 34566667777776555443 3466778899999999999999876655444433322 22221 2333333334444
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHH-HhhccCC
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLF-VIGLPET 482 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 482 (509)
+++.+. .........|.+|+++|++++++.+....+|..++|.+.... ..++...+.+.+++.++..++ .+++||.
T Consensus 90 G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~ 168 (368)
T TIGR00903 90 ALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPAL 168 (368)
T ss_pred HhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 444443 344455568999999999999999999999999888777632 345555666666665555444 3466764
Q ss_pred C
Q 040646 483 R 483 (509)
Q Consensus 483 ~ 483 (509)
+
T Consensus 169 p 169 (368)
T TIGR00903 169 P 169 (368)
T ss_pred C
Confidence 4
No 201
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.92 E-value=5.7e-09 Score=116.81 Aligned_cols=140 Identities=18% Similarity=0.146 Sum_probs=116.6
Q ss_pred eeeeecccccccc-ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646 95 IISEWDLECASSL-IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173 (509)
Q Consensus 95 i~~~~~~~~~~~~-~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 173 (509)
+.+++|+ +.. +.+++.+...++..++++++|+++|| +++|+++.++.++.+++.++..+.++.+.+++..++.|+
T Consensus 259 ~~~~~g~---s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 334 (1146)
T PRK08633 259 AKEVLGL---DNTFQVQYLLAASAIGIGIGSLLAGRLSGR-HIELGLVPLGALGLALSLFLLPTAPSLASVLVLFFLFGF 334 (1146)
T ss_pred HHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceEccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3455676 444 67999999999999999999999999 999999999988888888888888899999999999999
Q ss_pred ccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc--CCcchHHHHHHHhhHHH
Q 040646 174 GRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR--GSSWRRIYLYTSIPTIL 238 (509)
Q Consensus 174 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~--~~~wr~~f~~~~~~~~~ 238 (509)
+.+...+...+++.+.+|+++||+++++.+....+|.++++.++.+.. ..++...|++.+.+.++
T Consensus 335 ~~~~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 401 (1146)
T PRK08633 335 SAGLFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLI 401 (1146)
T ss_pred HHHHhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999888877754433 23455666665555444
No 202
>KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only]
Probab=98.91 E-value=1.1e-08 Score=92.88 Aligned_cols=128 Identities=20% Similarity=0.132 Sum_probs=96.8
Q ss_pred HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccch
Q 040646 118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQ 197 (509)
Q Consensus 118 ~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~ 197 (509)
+.-.-|.++.+.+.|| +|||+.+..+.+++++..++.....+-..+.+.-+..-+...+.+.+.+.|..|.+|.+-|+.
T Consensus 392 laefPGlLIt~~iver-lGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRat 470 (528)
T KOG0253|consen 392 LAEFPGLLITGVIVER-LGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRAT 470 (528)
T ss_pred HhhCCchhHHHHHHHH-hcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhc
Confidence 3445678899999999 999999999999999999888776543333333333333445557788999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhhHHHHHHHhheeec
Q 040646 198 VGSIGFFCFTLGFLSLPAIAYINRGSSWRRIYLYTSIPTILYCILVRFLVR 248 (509)
Q Consensus 198 ~~~~~~~~~~~G~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~ 248 (509)
..|.-+...-+|.++.|+++ +....+-..+..+.+..+++.++. ..++|
T Consensus 471 gvGtcSsmaRIggI~~p~iA-~~~e~s~sl~i~vy~~~~ilagIa-vcffP 519 (528)
T KOG0253|consen 471 GVGTCSSMARIGGIFSPVIA-MRAELSTSLPIFVYGALFILAGIA-VCFFP 519 (528)
T ss_pred chhhhhhHHhhhhhhhhHHH-HHhccceeehHHHHHHHHHHHHHH-heeee
Confidence 99999999999999999998 333344555666667777775544 46666
No 203
>KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=98.90 E-value=7.4e-09 Score=94.64 Aligned_cols=108 Identities=14% Similarity=0.079 Sum_probs=82.4
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
...+..+++..++.+...|.++||+|||.++.++.+..++...+... +.+....+..=++++... +..++..++++|
T Consensus 71 GflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~--S~~F~afv~aR~l~Gi~k-gnl~v~rAiisd 147 (451)
T KOG2615|consen 71 GFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL--SRNFAAFVLARFLGGIFK-GNLSVIRAIISD 147 (451)
T ss_pred hhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhcc-CchHHHHHHHHh
Confidence 34455667889999999999999999999999998888887666655 322211111123333322 334678899999
Q ss_pred ccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
++++++|+.+++..++...+|.++||.+.+.
T Consensus 148 V~sek~r~l~ms~v~~a~~lGfilGPmIGgy 178 (451)
T KOG2615|consen 148 VVSEKYRPLGMSLVGTAFGLGFILGPMIGGY 178 (451)
T ss_pred hcChhhccceeeeeehhhhcchhhcchhhhH
Confidence 9999999999999999999999999999883
No 204
>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator).
Probab=98.89 E-value=9.4e-08 Score=92.67 Aligned_cols=119 Identities=13% Similarity=0.096 Sum_probs=82.8
Q ss_pred ccc-ccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Q 040646 331 MPL-GLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAF 406 (509)
Q Consensus 331 ~~~-~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (509)
.|. +.++++.+...... ...++..++.++.|+++||+|||+.+..+.++..++.+++.+... +.+......++.+
T Consensus 24 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~g 102 (366)
T TIGR00886 24 AVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQ-SYSVLLLLRLFIG 102 (366)
T ss_pred hhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHH
Confidence 453 55677887665543 344777889999999999999999999999888888777766431 2333333333333
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
++. ..++....++.|.+|+++|+.+.++......+|..+++.+.
T Consensus 103 ~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 103 IAG-GSFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred Hhc-hhhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 332 33455677889999999999999998866666665555444
No 205
>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family. RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.
Probab=98.88 E-value=1.2e-08 Score=99.92 Aligned_cols=142 Identities=13% Similarity=0.004 Sum_probs=104.5
Q ss_pred ceeeeeccccccccccchhHHHHH-HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH------hHHHHHHH
Q 040646 94 SIISEWDLECASSLIKGLPASSFF-MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS------TNMWIYSV 166 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~-~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~------~~~~~l~~ 166 (509)
...+|.|++ ..+.|++..... ....++.++.|++.|| +|+|+.+..+..+.++..+..... ++.+.+..
T Consensus 233 ~~l~~~G~s---~~~ig~~~~~~~~~~~~~g~~~~g~l~~r-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (390)
T TIGR02718 233 LYLVDAGWP---LEWIGRLGMAGGAVTVLLGCGGGAWLVRR-AGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWS 308 (390)
T ss_pred HHHHhcCCC---HHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHH
Confidence 334457884 447888888775 4667788999999999 999999988776654433332221 23334445
Q ss_pred HHHHHhhccchhhhhheeeeEeeccC-cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHH
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVGK-KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~ 239 (509)
...+.+++.+...+...+.+.+..++ +++++.+++.+...++|..++|.+ +.+.+..||+..|++.++..++.
T Consensus 309 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 309 CSAFGSLITGITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 55566677777777777777777765 889999999999999999999999 67777789999998887766664
No 206
>KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.87 E-value=2.2e-08 Score=97.34 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=108.8
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---HHH------HH
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---NMW------IY 164 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---~~~------~l 164 (509)
.+-++-|++.+ +..+......+...+..+.+..+.|| +|||+.++.+..+..+..+++.... +.. ..
T Consensus 295 ~i~~~aG~~~~---~a~~an~~~g~v~~~~t~~~~~lid~-~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~~ 370 (485)
T KOG0569|consen 295 SIFKTAGFTPE---EAQYANLGIGIVNLLSTLVSPFLIDR-LGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYLC 370 (485)
T ss_pred HHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 44455566433 56677777778888899999999999 9999999999999988888876542 111 12
Q ss_pred HHHHHHH--hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHH
Q 040646 165 SVLRFIN--GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCI 241 (509)
Q Consensus 165 ~~~r~l~--G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~ 241 (509)
+++.++. .++.| .-|...-+.+|.+|++.|..++++..+..-+...+-... -.+-+..|- +.|++..+++.+..+
T Consensus 371 i~~~~~~~~~f~~G-~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 371 IAAIFLFIISFAIG-PGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHHHHHHhhhcC-CCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence 3333333 33333 367778889999999999999998877776665544333 233333333 778888888888888
Q ss_pred HhheeecCch
Q 040646 242 LVRFLVRESP 251 (509)
Q Consensus 242 ~~~~~~~esp 251 (509)
..++.+|||.
T Consensus 449 ~~~~~lPETk 458 (485)
T KOG0569|consen 449 YLYRYLPETK 458 (485)
T ss_pred HHHHhCcccC
Confidence 8999999983
No 207
>PRK15034 nitrate/nitrite transport protein NarU; Provisional
Probab=98.87 E-value=4.2e-07 Score=88.85 Aligned_cols=114 Identities=14% Similarity=0.085 Sum_probs=80.1
Q ss_pred cCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHH
Q 040646 337 SLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG---KIWTSVEIGLELVAFFSAC 410 (509)
Q Consensus 337 ~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 410 (509)
+++++......+.+ +...+..+..|++.||+|.|+++.++.++..+..+...+.. .++....+.+.++.+++ +
T Consensus 64 ~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g 142 (462)
T PRK15034 64 GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-G 142 (462)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-H
Confidence 57777666554433 55566777889999999999999988888887777766531 12334444444444444 5
Q ss_pred HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhH----HHHHHH
Q 040646 411 TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGV----FSPVLV 451 (509)
Q Consensus 411 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~----i~p~~~ 451 (509)
..++.....+++.+|+++||++.|+....+++|.. +.|.+.
T Consensus 143 ~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i 187 (462)
T PRK15034 143 ANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVI 187 (462)
T ss_pred HhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 57778888899999999999999999655555554 455444
No 208
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=98.87 E-value=4.3e-08 Score=92.34 Aligned_cols=146 Identities=18% Similarity=0.182 Sum_probs=119.5
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-STNMWIYSVLRFI 170 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-~~~~~~l~~~r~l 170 (509)
-|.+++..|. +...++++.-.|.++..+|..+.|+++|| +.|+.+.....+.++..+...+ .++.+..++.-++
T Consensus 235 ~P~L~~v~g~---s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~dr--~~~~~l~~~~~l~a~~~l~l~~~~~~~~~~~~~~~~ 309 (394)
T COG2814 235 RPFLESVAGF---SVSAVSLVLLAFGIAGFIGNLLGGRLADR--GPRRALIAALLLLALALLALTFTGASPALALALLFL 309 (394)
T ss_pred HHHHHHccCC---CHhHHHHHHHHHHHHHHHHHHHHhhhccc--cchhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 6788888888 44579999999999999999999999998 7777777776666666666555 4556677777777
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~ 243 (509)
.|++.+.........+++ ..++.++.+.+++....++|..+|..+ +.+.++.|+....++.+++.++..++.
T Consensus 310 wg~a~~~~~~~~~~~~a~-~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~ 382 (394)
T COG2814 310 WGFAFSPALQGLQTRLAR-LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLA 382 (394)
T ss_pred HHHHhhhhhhHHHHHhcc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHH
Confidence 888877777777777777 446889999999999999999999999 577888999999999988888755443
No 209
>PTZ00207 hypothetical protein; Provisional
Probab=98.85 E-value=1.4e-07 Score=94.73 Aligned_cols=144 Identities=9% Similarity=-0.015 Sum_probs=94.1
Q ss_pred ccccccCCchHHHHHHHHHhhhh--hHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc----chhHHHHHHHHHH
Q 040646 332 PLGLGSLSFNLYLSVTFNALSEL--PASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK----IWTSVEIGLELVA 405 (509)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 405 (509)
+.+.+++|.+......+..++.. ...++.|++.||+|+|+++.++.++..++.++..+... .+.+...+..++.
T Consensus 51 ~~L~~~lgls~~~l~~i~svg~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~ 130 (591)
T PTZ00207 51 GAMQARYNLTQRDLSTITTVGIAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLM 130 (591)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 44566678776655544443322 23456899999999999999999999999888777421 2233333334444
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH-HHHHHHhhcccchhHHHHHHHHHHHHHHHH
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF-SPVLVAAGRQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
+++.+..++.....+.+.+| ++||.+.|+......+|+.+ +|+..+....+....+++.+++.++..++.
T Consensus 131 G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~ 201 (591)
T PTZ00207 131 TLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILA 201 (591)
T ss_pred HHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45555555566667788887 67999999999999999975 555444333334455555565555544443
No 210
>PRK10429 melibiose:sodium symporter; Provisional
Probab=98.85 E-value=2.2e-07 Score=93.19 Aligned_cols=113 Identities=12% Similarity=0.098 Sum_probs=88.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHhhccchhhhhh
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF-----STNMWIYSVLRFINGFGRATIGTCA 182 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~l~~~r~l~G~~~g~~~~~~ 182 (509)
..+++.+...++..++.+++++++|| +|+|+.+.++.++..++.+...+ ..+.+.+++.-++.|++.+...+..
T Consensus 267 ~~~~~~~~~~i~~ii~~~~~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~g~~~~~~~~~~ 345 (473)
T PRK10429 267 LFPYYLSYAGAANLVTLILFPRLVKS-LSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLIVIAGILLNIGTALFWVLQ 345 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778889999999999999 99999999888877766655433 3456777778888999999999999
Q ss_pred eeeeEeecc-------CcccchhhhhhHHHHHHHHHHHHHH-HHHhc
Q 040646 183 IVLSTELVG-------KKRRGQVGSIGFFCFTLGFLSLPAI-AYINR 221 (509)
Q Consensus 183 ~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~ 221 (509)
.++++|..+ .++.|..++......-+|..+++.+ +.+.+
T Consensus 346 ~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~ 392 (473)
T PRK10429 346 VIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLG 392 (473)
T ss_pred HHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999966 2334557888888888888888877 55543
No 211
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=98.84 E-value=2.3e-05 Score=76.80 Aligned_cols=265 Identities=11% Similarity=0.091 Sum_probs=152.9
Q ss_pred Ccceeeeeccccc--cccccchhHHHHHHHHHHH-HhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----h-----
Q 040646 92 HTSIISEWDLECA--SSLIKGLPASSFFMGCLAG-GLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----T----- 159 (509)
Q Consensus 92 ~~~i~~~~~~~~~--~~~~~~~~~s~~~~~~~i~-~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----~----- 159 (509)
+.++++.+.++.. +.....++-+...+..++. .++.+++++| ++|++++-+....+....+++++. +
T Consensus 26 LR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~-~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p 104 (472)
T TIGR00769 26 LRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNI-LSKEALFYTVISPFLGFFALFAFVIYPLSDLLHP 104 (472)
T ss_pred HHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCC
Confidence 4566666666422 2246788888887777777 8999999999 999999887777766666665554 1
Q ss_pred ----------------------HHHHHHHHHHHHhhccchhhh-hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH
Q 040646 160 ----------------------NMWIYSVLRFINGFGRATIGT-CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI 216 (509)
Q Consensus 160 ----------------------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 216 (509)
+.|...+..+...+-...... ....+.+|.++.+|-.|..++...+.++|.++++.+
T Consensus 105 ~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~ 184 (472)
T TIGR00769 105 TALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRT 184 (472)
T ss_pred cHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133344445555555444454 677889999999999999999999999999999987
Q ss_pred -HHHhc--------CCcch----HHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccc
Q 040646 217 -AYINR--------GSSWR----RIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDF 283 (509)
Q Consensus 217 -~~~~~--------~~~wr----~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (509)
.++.. ...|. ..+.+.++.+++. +....++.+.. . .+++..+.+
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~-~~~~~~l~~~~-------~--------------~~~~~~~~~- 241 (472)
T TIGR00769 185 IKYFSKLRASLGPGVDGWHVSLKNLMVIVICSGLAI-ILLYWWVNRNV-------L--------------TDPRSYNPA- 241 (472)
T ss_pred HHHHHHhhhccccccChHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcc-------c--------------CCccccchh-
Confidence 45441 12342 2223333333332 22222221100 0 000000000
Q ss_pred cCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccCCchH-------HHHHHHHHhhhhhH
Q 040646 284 NNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNL-------YLSVTFNALSELPA 356 (509)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~~~~~~~~~~~ 356 (509)
.+.++++++.....+++.++++|..+.......+...+.+..++......++..-++ .......++..++.
T Consensus 242 --~~~~k~k~k~~~~es~k~i~~S~yL~~ia~~vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~ 319 (472)
T TIGR00769 242 --LKEKKVKPKMSTMESLKFLVSSPYILDLALLVIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTM 319 (472)
T ss_pred --hccccCCCCCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 000111112233457888999998766666666666666665544322222211111 11223344555556
Q ss_pred HHHHHHHhhhcCchhHHHHHHHHHHH
Q 040646 357 SLITFFLIGKLKRKSSLLGFTIMSGV 382 (509)
Q Consensus 357 ~~~~g~l~dr~gr~~~~~~~~~~~~~ 382 (509)
.++.+++.+|+|-+....+.-++..+
T Consensus 320 ~l~~~~l~~~~Gw~~~a~i~Pii~li 345 (472)
T TIGR00769 320 MLLSGNVIRKYGWLTAALITPLVMLL 345 (472)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 66679999999988766654444433
No 212
>TIGR00901 2A0125 AmpG-related permease.
Probab=98.82 E-value=2.6e-07 Score=89.21 Aligned_cols=155 Identities=15% Similarity=0.005 Sum_probs=98.5
Q ss_pred hhhccccccccCCchHHHHHHHHHh--hhhhHHHHHHHHhhhc-----CchhHH-HHHHHHHHHHHHHHHHhccch-hHH
Q 040646 327 VYYGMPLGLGSLSFNLYLSVTFNAL--SELPASLITFFLIGKL-----KRKSSL-LGFTIMSGVCSVLCVVMGKIW-TSV 397 (509)
Q Consensus 327 ~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~g~l~dr~-----gr~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~ 397 (509)
.....|.+.++.|.+.........+ ... ..++.|.++||+ |||+.+ ..+.++.+++...+.+..... .+.
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~-~~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~ 85 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLVGLPYS-LKFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPL 85 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHH
Confidence 3345677788888887776655432 222 278999999998 888864 555666666555555433222 222
Q ss_pred HHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhc--cc--------chhHHHHHHH
Q 040646 398 EIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGR--QN--------NFLSYGIFGL 467 (509)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~--~~--------~~~~~~~~~~ 467 (509)
.....++.........+...+++.|.+|+++|+.+.++......+|.+++|.+.+... .+ +...+.+.++
T Consensus 86 l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai 165 (356)
T TIGR00901 86 LAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTAL 165 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHH
Confidence 2222233334444455677889999999999999999999989999998888876221 22 4455666666
Q ss_pred HHHHHHHHHhh-ccCC
Q 040646 468 VIGLCGLFVIG-LPET 482 (509)
Q Consensus 468 ~~~~~~~~~~~-~~~~ 482 (509)
..++..+..++ .+|.
T Consensus 166 ~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 166 LILPGLLVTLFLAKEP 181 (356)
T ss_pred HHHHHHHHHHHhccCC
Confidence 55554444333 4553
No 213
>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]
Probab=98.81 E-value=7.6e-08 Score=89.81 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=108.1
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh-------HHHHHHHH
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST-------NMWIYSVL 167 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~-------~~~~l~~~ 167 (509)
++++|++ +..+.|...+.+.+...+..+.+|+++|| +|.+|++.......+++..+.++.+ +...+++.
T Consensus 245 ~~~~fg~---~~~~Ag~~a~~f~~~g~l~Rp~GG~LsDR-~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 320 (417)
T COG2223 245 LVTQFGL---SPVTAGLIAFLFPLIGALARPLGGWLSDR-IGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAV 320 (417)
T ss_pred HHHhcCC---ChhhHHHHHHHHHHHHHHHHhccchhhhh-ccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHH
Confidence 3567888 44467899999999999999999999999 9999999999888888888877653 34433333
Q ss_pred HHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHHHh
Q 040646 168 RFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 168 r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~~~ 243 (509)
-+..++..|.-......++..++| ++-|.+.|+..+..++|...-|.. +...+..| ++..|++.....++..++.
T Consensus 321 ~l~l~~~~G~GnGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~ 397 (417)
T COG2223 321 FLALFVFAGLGNGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLT 397 (417)
T ss_pred HHHHHHHhccCcchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence 333344444444456677888886 477899999999999998777776 66655555 8888888887777755444
No 214
>PRK09584 tppB putative tripeptide transporter permease; Reviewed
Probab=98.79 E-value=1.5e-07 Score=94.72 Aligned_cols=168 Identities=12% Similarity=-0.050 Sum_probs=98.4
Q ss_pred HHhchH-HHHHHHHHHHHHHHHhHhhhccccc-cccCCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHH
Q 040646 304 LVEKKW-ALRRLSAIMVTGFGIGMVYYGMPLG-LGSLSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFT 377 (509)
Q Consensus 304 l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~ 377 (509)
.+++|. ++......+...++.......++.+ .+++|.+......+.. .......+++|+++|| +|||+.+..+.
T Consensus 16 ~~~~p~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~ 95 (500)
T PRK09584 16 AFKQPKAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 345553 3333333333333333333333444 3667877655433332 2223334678999999 59999999998
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhh--hhhHHHHHHHHHhHhhHHHHHHHHhhc
Q 040646 378 IMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCV--RNSAISMVRQALVFGGVFSPVLVAAGR 455 (509)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~~~~~ 455 (509)
++.+++..++.+.... .........+.+++.+...+...++..|.+|++. +..+.++.+...++|..++|.+.+...
T Consensus 96 ~~~~ig~~l~~~~~~~-~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~ 174 (500)
T PRK09584 96 IVLAIGYALVAWSGHD-AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLA 174 (500)
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887666653222 2222222233334445455666788899997643 456788888889999999999988332
Q ss_pred --ccchhHHHHHHHHHHHH
Q 040646 456 --QNNFLSYGIFGLVIGLC 472 (509)
Q Consensus 456 --~~~~~~~~~~~~~~~~~ 472 (509)
.++...|.+.++..+++
T Consensus 175 ~~~g~~~~F~i~~i~~~i~ 193 (500)
T PRK09584 175 AKYGWSVAFALSVVGMLIT 193 (500)
T ss_pred HhhCHHHHHHHHHHHHHHH
Confidence 34455555555433333
No 215
>KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only]
Probab=98.79 E-value=9.6e-08 Score=97.23 Aligned_cols=138 Identities=19% Similarity=0.131 Sum_probs=105.6
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
.....+..++..+|.++.|.++||+|||++++.+.++..++.+...+ .++.....++-++.+++......+...+..|
T Consensus 121 ~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~--a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E 198 (521)
T KOG0255|consen 121 ALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF--APNYWMFLIFRFLSGFFGSGPLTVGFGLVAE 198 (521)
T ss_pred HHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH--hCcHHHHHHHHHHHHhhccchhHHhHhhhee
Confidence 34456666888999999999999999999999999999999877777 4445566666677777777888889999999
Q ss_pred ccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHhhccCCC
Q 040646 423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQNNFLSYGIFGLVIGLCGLFVIGLPETR 483 (509)
Q Consensus 423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (509)
.+++++|+.+..+ ......++.++|...+....++.+.+.+.....++..++.++.+|.+
T Consensus 199 ~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 199 IVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred ecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 9999999999999 77777777777777775545566666666665555544444444543
No 216
>PRK10207 dipeptide/tripeptide permease B; Provisional
Probab=98.79 E-value=9.1e-08 Score=95.78 Aligned_cols=134 Identities=10% Similarity=-0.028 Sum_probs=88.6
Q ss_pred cccCCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 040646 335 LGSLSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSAC 410 (509)
Q Consensus 335 ~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (509)
.+++|.+......+.+ +......+++|+++|| +|||+++..+.++..++.+.+.+...... .......+.+.+.+
T Consensus 42 ~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~-ll~~~~~l~~ig~g 120 (489)
T PRK10207 42 VKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPD-LIFIALGTIAVGNG 120 (489)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHhccc
Confidence 4457776555443332 3444556689999999 99999999999999998887776432222 22122233345555
Q ss_pred HHhHHHHhhcccccchh--hhhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHH
Q 040646 411 TAFSLLLIYTLELFPTC--VRNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVI 469 (509)
Q Consensus 411 ~~~~~~~~~~~~~~p~~--~r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~ 469 (509)
...+...+++.|.+|++ .|+.+.++.+...++|..++|.+.+.. ..++...|.+.++..
T Consensus 121 ~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~ 183 (489)
T PRK10207 121 LFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAGL 183 (489)
T ss_pred cccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH
Confidence 55667788999999877 457788888888899988888877732 223444555544433
No 217
>TIGR01272 gluP glucose/galactose transporter. Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.
Probab=98.78 E-value=1.1e-07 Score=89.26 Aligned_cols=131 Identities=9% Similarity=0.068 Sum_probs=102.5
Q ss_pred eeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccch
Q 040646 98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRAT 177 (509)
Q Consensus 98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~ 177 (509)
++|+ ++.+.++..+.+..+..+|.+..+++.|| +|+|+++.++..+..++.++....++...+ ..-++.|++.+.
T Consensus 172 ~~g~---s~~~a~~~~s~~~~~~~iGr~~~~~l~~r-~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~ 246 (310)
T TIGR01272 172 ALGL---PEDQAAHFTAYTWGGAMVGRFIGSAVMPM-ISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSI 246 (310)
T ss_pred cCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Confidence 3566 44478999999999999999999999999 999999988888888777666655543322 355588999999
Q ss_pred hhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhh
Q 040646 178 IGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIP 235 (509)
Q Consensus 178 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~ 235 (509)
.+|...+...+..|+ +.+.+.++. ....+|.++.|.+ |.+.+..|.+..|++..+.
T Consensus 247 i~P~~~s~a~~~~~~-~~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~ 303 (310)
T TIGR01272 247 MFPTIFSLALNALGR-HTSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC 303 (310)
T ss_pred HHHHHHHHHHhhhhh-hhhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 999999988888774 345666665 4566888888876 8888888888888754443
No 218
>COG2270 Permeases of the major facilitator superfamily [General function prediction only]
Probab=98.78 E-value=1.5e-08 Score=94.48 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=123.9
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGR 175 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~ 175 (509)
.+++|+ ++.+..++.-...+..++|++++|+|.|| +|.|+++.+++++..+.++...+...-..+.+.-.+.|...
T Consensus 280 ~~~~gl---s~~~lll~g~~~~vvA~lg~ii~g~Ld~r-fg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~ 355 (438)
T COG2270 280 AADLGL---SSTELLLIGIALSVVAALGAIIAGFLDER-FGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSL 355 (438)
T ss_pred HHHcCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhc
Confidence 348899 55578888888899999999999999999 99999999999999999998888777777778888999999
Q ss_pred chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcC-CcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRG-SSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|.....+.+|..+..|+++-++.+|+++...-.+..+||.+ +.+.+- .+-|.-+....++..+ .++....+|+.
T Consensus 356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~i-Gl~~L~~v~~~ 431 (438)
T COG2270 356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLI-GLLLLLRVKVP 431 (438)
T ss_pred chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hHhhEEeecCC
Confidence 99999999999999999999999999999999999999998 654432 2356665555554444 34555666653
No 219
>PRK10133 L-fucose transporter; Provisional
Probab=98.78 E-value=3.6e-07 Score=90.47 Aligned_cols=128 Identities=9% Similarity=-0.006 Sum_probs=92.4
Q ss_pred hHhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHH-hccchhHHHHH
Q 040646 325 GMVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVV-MGKIWTSVEIG 400 (509)
Q Consensus 325 ~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 400 (509)
.......|.+.++++.+...... ...++..++.++.|++.||+|||+++..+..+..++.+++.. ...++......
T Consensus 43 ~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~ 122 (438)
T PRK10133 43 NLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLV 122 (438)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 33444567777778887665543 444778889999999999999999999999998888766532 11333344444
Q ss_pred HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 401 LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
..++.+++.+...+....++.|..|++.|....++.+....+|..++|.+..
T Consensus 123 ~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~ 174 (438)
T PRK10133 123 GLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666676777777788777776666788888888889888887754
No 220
>TIGR00806 rfc RFC reduced folate carrier. Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.
Probab=98.78 E-value=4.1e-07 Score=87.53 Aligned_cols=151 Identities=17% Similarity=0.082 Sum_probs=107.8
Q ss_pred hccccccccCCchHHH-HH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHH
Q 040646 329 YGMPLGLGSLSFNLYL-SV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELV 404 (509)
Q Consensus 329 ~~~~~~~~~~g~~~~~-~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (509)
+..|++.+++|++... .+ .....+..+..+.+|+++||+|.|+++..+.+...+..++..+.. ......++-++
T Consensus 47 ~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~--Sl~~L~i~R~l 124 (511)
T TIGR00806 47 FITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGT--SVWHMQLMEVF 124 (511)
T ss_pred HHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
Confidence 4456677788887665 43 444477788999999999999999999999988888888887732 34444444555
Q ss_pred HHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc----cchhHHHHHHHHHHHHHHHHhhcc
Q 040646 405 AFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ----NNFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
.+++.+..+ ....++...+|+++|+++.|+.+....+|.++++.+.+.... .+.....+......++.++.+++|
T Consensus 125 lGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP 203 (511)
T TIGR00806 125 YSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLK 203 (511)
T ss_pred HHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 666666676 888999999999999999999999999999988888773111 111122233333344555567777
Q ss_pred CC
Q 040646 481 ET 482 (509)
Q Consensus 481 ~~ 482 (509)
..
T Consensus 204 ~~ 205 (511)
T TIGR00806 204 RP 205 (511)
T ss_pred CC
Confidence 43
No 221
>PRK09848 glucuronide transporter; Provisional
Probab=98.76 E-value=2.5e-07 Score=92.26 Aligned_cols=122 Identities=19% Similarity=0.185 Sum_probs=95.2
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhh
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGF 173 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~ 173 (509)
++.+|.+ +...++......++..++.++.+++.|| +|+|+++.++.++.+++.++..+.+ +++.+.+..++.|+
T Consensus 256 ~~~~g~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~r-~g~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~l~g~ 331 (448)
T PRK09848 256 RYVLNDT---GLFTVLVLVQNLVGTVASAPLVPGMVAR-IGKKNTFLIGALLGTCGYLLFFWVSVWSLPVALVALAIASI 331 (448)
T ss_pred eeecCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH
Confidence 3445542 2233444444467788899999999999 9999999999998888887777654 67777778889999
Q ss_pred ccchhhhhheeeeEeeccCc-------ccchhhhhhHHHHHHHHHHHHHH-HHHhc
Q 040646 174 GRATIGTCAIVLSTELVGKK-------RRGQVGSIGFFCFTLGFLSLPAI-AYINR 221 (509)
Q Consensus 174 ~~g~~~~~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~~~~~~-~~~~~ 221 (509)
|.+...+...++.+|..|.+ ++|...++.+....+|..+++.+ +.++.
T Consensus 332 G~~~~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~ 387 (448)
T PRK09848 332 GQGVTMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG 387 (448)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888754 35888999999999999998887 45443
No 222
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.74 E-value=4.3e-08 Score=109.48 Aligned_cols=139 Identities=14% Similarity=0.093 Sum_probs=111.1
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-----------------
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----------------- 158 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----------------- 158 (509)
.+.+|. +..+.|++.+.+.+|..+++++.|+++|| .++++.+..+.++.+++.+...+.
T Consensus 253 ~~~~g~---~~~~~g~~~~~~~~g~~ig~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 328 (1140)
T PRK06814 253 KETLGG---DENVATLFLAVFSVGVAVGSFLASKLSEG-RITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVF 328 (1140)
T ss_pred HHHcCC---chHHHHHHHHHHHHHHHHHHHHHHHHhCC-ceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhh
Confidence 345677 44578999999999999999999999998 887777666666666655544443
Q ss_pred ---hHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHh-cCCcchHHHHHHH
Q 040646 159 ---TNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYIN-RGSSWRRIYLYTS 233 (509)
Q Consensus 159 ---~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~-~~~~wr~~f~~~~ 233 (509)
++.+.+++..++.|++.+...+...+++.+.+|++.||+++|+.++...+|..+++++ +.+. ...++...+++.+
T Consensus 329 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~ 408 (1140)
T PRK06814 329 LSKRHGWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIA 408 (1140)
T ss_pred hcccccHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 6778888889999999999999999999999999999999999999999999999988 4443 3446666666555
Q ss_pred hhHHH
Q 040646 234 IPTIL 238 (509)
Q Consensus 234 ~~~~~ 238 (509)
+..++
T Consensus 409 ~~~~~ 413 (1140)
T PRK06814 409 LANLI 413 (1140)
T ss_pred HHHHH
Confidence 54444
No 223
>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter. This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.
Probab=98.73 E-value=5.7e-07 Score=88.52 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=98.5
Q ss_pred HHHhHhhhccccccccCCchHHHHHHHH---HhhhhhHHHHHHHHhh----hcCchhHHHHH-HHHHHHHHHHHHHhccc
Q 040646 322 FGIGMVYYGMPLGLGSLSFNLYLSVTFN---ALSELPASLITFFLIG----KLKRKSSLLGF-TIMSGVCSVLCVVMGKI 393 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~g~l~d----r~gr~~~~~~~-~~~~~~~~~~~~~~~~~ 393 (509)
++........+.+++.+|.+......+. .+.+++..++.|+++| |+|||+..+.. .....++..++.+....
T Consensus 18 ~~~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~ 97 (477)
T TIGR01301 18 FGWALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADI 97 (477)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchh
Confidence 3334444444556777888876655443 3667778888999999 59999988765 44444554555442211
Q ss_pred -----------hh----HHHHHHHHHHHHHHHHHhHHHHhhcccccchhhh--hhHHHHHHHHHhHhhHHHHHHHHhhc-
Q 040646 394 -----------WT----SVEIGLELVAFFSACTAFSLLLIYTLELFPTCVR--NSAISMVRQALVFGGVFSPVLVAAGR- 455 (509)
Q Consensus 394 -----------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~g~~~~~~~~g~~i~p~~~~~~~- 455 (509)
.. ...+....+.-+......+...+++.|..|+++| +.+.++.+....+|+.+++.+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~ 177 (477)
T TIGR01301 98 GHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGL 177 (477)
T ss_pred hhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 00 1111112222244555666778999999998865 57888888888999998888776321
Q ss_pred ----------------ccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646 456 ----------------QNNFLSYGIFGLVIGLCGLFV-IGLPETR 483 (509)
Q Consensus 456 ----------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 483 (509)
.+....|.+.+++.+++.+.. +..+|..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 178 YKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 022344555555555555443 4456643
No 224
>PF03825 Nuc_H_symport: Nucleoside H+ symporter
Probab=98.72 E-value=1.4e-07 Score=91.35 Aligned_cols=142 Identities=13% Similarity=0.166 Sum_probs=112.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH-hHHHHHH----HHHHHHhhccchhhhhh
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS-TNMWIYS----VLRFINGFGRATIGTCA 182 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~-~~~~~l~----~~r~l~G~~~g~~~~~~ 182 (509)
..+.+.+...++-.+.-...+++..| +|.|+++.++.+.+++=..+.+.. ++.+... +...++|+..+......
T Consensus 244 ~~g~~~~l~~~aEi~~f~~~~~~~~r-~g~~~ll~~a~~~~~vR~~l~a~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~ 322 (400)
T PF03825_consen 244 TIGILWALGVVAEIPFFFFSGRFLKR-FGIKWLLLLALVAYAVRWLLYAYFSDPWPFIVALQLLGQLLHGLTFGLFHAAS 322 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45667777777888888899999999 999999999999999998888887 4544333 34567999999999999
Q ss_pred eeeeEeeccCcccchhhhhhHH-HHHHHHHHHHHH-HHHhcCCc------chHHHHHHHhhHHHHHHHhheeecCc
Q 040646 183 IVLSTELVGKKRRGQVGSIGFF-CFTLGFLSLPAI-AYINRGSS------WRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 183 ~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~~~~~-~~~~~~~~------wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
..++.+.+|++.|+++.+++.. ..++|..+|..+ |++.+.+| |...+.+.+...++..++..++.+|+
T Consensus 323 ~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 323 VRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999876 467999999988 56666544 55566667766666655665656553
No 225
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=98.70 E-value=1.5e-06 Score=89.05 Aligned_cols=144 Identities=18% Similarity=0.208 Sum_probs=111.0
Q ss_pred eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHH
Q 040646 97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--------MWIYSVLR 168 (509)
Q Consensus 97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~r 168 (509)
+.+|+ ++.....+...+....-+..+++|.++|+++||++.+.++.++..++.++.+++.. ....+++-
T Consensus 16 ~~lg~---~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gL 92 (654)
T TIGR00926 16 NFLGF---SESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGL 92 (654)
T ss_pred HHcCC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHH
Confidence 34666 33355666667777777778899999999999999999999999999988876421 23466778
Q ss_pred HHHhhccchhhhhheeeeEeeccCcc---cchhhhhhHHHHHHHHHHHHHH-HHHhcC-------CcchHHHHHHHhhHH
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKR---RGQVGSIGFFCFTLGFLSLPAI-AYINRG-------SSWRRIYLYTSIPTI 237 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~~~~~-~~~~~~-------~~wr~~f~~~~~~~~ 237 (509)
.+..+|.|+.-+...+...|.+++++ |-..+.++..+.++|.++++.+ .++..+ .+|...|.+.++..+
T Consensus 93 aLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ 172 (654)
T TIGR00926 93 ALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMI 172 (654)
T ss_pred HHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHH
Confidence 88889999999999999999987543 5667788888899999988877 555422 369999999888777
Q ss_pred HHHHHh
Q 040646 238 LYCILV 243 (509)
Q Consensus 238 ~~~~~~ 243 (509)
+..++.
T Consensus 173 ia~lvf 178 (654)
T TIGR00926 173 LALIVF 178 (654)
T ss_pred HHHHHH
Confidence 654443
No 226
>KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism]
Probab=98.68 E-value=2.4e-08 Score=99.24 Aligned_cols=152 Identities=20% Similarity=0.270 Sum_probs=132.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCC--chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLG--RKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRF 169 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~G--rr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~ 169 (509)
+|...++.+. ++.+.+.+.++..+...++.++.|+++|+ .. ++.+..++++..+++.+.+++.++++.++..-+
T Consensus 321 l~~~~~~~g~---~~~~aa~l~Siigi~~i~gRi~~G~laD~-~~~~~~~~~~~~ll~~gl~~~~~p~~~~~~~l~~~~~ 396 (509)
T KOG2504|consen 321 LPSYAKSLGL---SSNDAAFLLSIIGVSDIIGRIILGLLADK-PGIRALVLFLLTLLIAGLARLFLPFATTYVGLIVFSI 396 (509)
T ss_pred HHHHHhhcCC---ChhhhHHHHHHHHHhhhhhhhhhhhhcCc-cccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6777888888 55589999999999999999999999999 77 566678888888999999999999999999999
Q ss_pred HHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc-chHHHHHHHhhHHHHHHHhheee
Q 040646 170 INGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS-WRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 170 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
+.|++.|.........+.|..+.++-..+.|+.....+++.++||++ +++.+..+ |...|+..++..++.+ ..++..
T Consensus 397 ~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~-~~~~~~ 475 (509)
T KOG2504|consen 397 LFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSA-VLLLIL 475 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHH-HHHHHh
Confidence 99999999998888899999999999999999999999999999999 55555555 9999999998888755 333444
Q ss_pred c
Q 040646 248 R 248 (509)
Q Consensus 248 ~ 248 (509)
|
T Consensus 476 ~ 476 (509)
T KOG2504|consen 476 R 476 (509)
T ss_pred H
Confidence 4
No 227
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=98.68 E-value=8.7e-08 Score=98.79 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=90.8
Q ss_pred ccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc---------------
Q 040646 330 GMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG--------------- 391 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~--------------- 391 (509)
.++.+.++++.+....+. ...++..++.++.+++.||.+||+.+.++.++.+++.+++.+..
T Consensus 55 ~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~ 134 (633)
T TIGR00805 55 SLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSST 134 (633)
T ss_pred hchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCCcccccccccc
Confidence 345566667776555443 34477788889999999999999999999999888887776531
Q ss_pred -------------c--------------------c-hhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHH
Q 040646 392 -------------K--------------------I-WTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVR 437 (509)
Q Consensus 392 -------------~--------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~ 437 (509)
. . .....++.-++.+++.+..++...+++.|.+|++.|+...++.+
T Consensus 135 ~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~ 214 (633)
T TIGR00805 135 GNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILE 214 (633)
T ss_pred ccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHH
Confidence 0 0 01122233344445555666778899999999999999999999
Q ss_pred HHHhHhhHHHHHHHH
Q 040646 438 QALVFGGVFSPVLVA 452 (509)
Q Consensus 438 ~~~~~g~~i~p~~~~ 452 (509)
....+|..+++++.+
T Consensus 215 ~~~~iG~~lG~llgg 229 (633)
T TIGR00805 215 SIAVFGPAFGYLLGS 229 (633)
T ss_pred HHHHhhhHHHHHHHH
Confidence 999999998888876
No 228
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=98.67 E-value=2.4e-06 Score=82.46 Aligned_cols=114 Identities=24% Similarity=0.307 Sum_probs=92.8
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccchhhhhhee
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRATIGTCAIV 184 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~ 184 (509)
.+..+.......+..++.+++..+.+| +|+|+++.++.++..++.++.-+.+ +.+.+++..++.+++.+...+...+
T Consensus 272 l~~~~~~~~~~~~~l~~~~~~p~L~~~-~gkk~~~~~~~~~~~i~~~~~~f~~~~~~~l~~~~~~i~~~g~~~~~~l~wa 350 (467)
T COG2211 272 LFAYLLLLASGAGLLIGLILWPRLVKK-FGKKKLFLIGLLLLAVGYLLLYFTPAGSVVLIVVALIIAGVGTGIANPLPWA 350 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHH-hchHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHhhccccccHH
Confidence 355667777777777889999999999 9999999999999999999998876 7889999999999999999999999
Q ss_pred eeEeeccC-------cccchhhhhhHHHHHHHHHHHHHH-HHHhc
Q 040646 185 LSTELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI-AYINR 221 (509)
Q Consensus 185 ~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~ 221 (509)
+++|..+- +.-|...+......=+|..++..+ ++.+.
T Consensus 351 m~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~ 395 (467)
T COG2211 351 MVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILG 395 (467)
T ss_pred HhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988752 233566677777777777777655 55443
No 229
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=98.67 E-value=1.3e-05 Score=77.67 Aligned_cols=321 Identities=13% Similarity=0.010 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH----H--HHh---------HHHHHHHHHHHHhhccchhh
Q 040646 115 SFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT----I--FST---------NMWIYSVLRFINGFGRATIG 179 (509)
Q Consensus 115 ~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~----~--~~~---------~~~~l~~~r~l~G~~~g~~~ 179 (509)
.-.+...+.++..|.+.|| ..|.+++..+.+..-++..+. . +.. -+..+++.-.+.|...-...
T Consensus 46 ~~~~~~~~f~~~vG~~iD~-~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las 124 (432)
T PF06963_consen 46 VRSLSAILFGPWVGRWIDR-SPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLAS 124 (432)
T ss_pred HHHHHHHHhhHHHHHHHhC-CcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778889999999 999998877665543332222 1 110 11222222222232222211
Q ss_pred h-hheeeeEeecc------CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeec---
Q 040646 180 T-CAIVLSTELVG------KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVR--- 248 (509)
Q Consensus 180 ~-~~~~~i~e~~~------~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~--- 248 (509)
. ...+.=.||.. ++.+.+..+...-.=-+.-+++|++ |.+....+.+....+.+...++..++=++++.
T Consensus 125 ~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY 204 (432)
T PF06963_consen 125 IANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVY 204 (432)
T ss_pred hhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22233335532 3334445555544455678889998 67777778887776666666554333222221
Q ss_pred -CchHHHHhcCCHHHHHHHHHHHHhhcCCcccccc-ccCccccc------ccccccchhHHHHHHhchHHHHHHHHHHHH
Q 040646 249 -ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMD-FNNVSFEQ------ETWNVDLYSAIKILVEKKWALRRLSAIMVT 320 (509)
Q Consensus 249 -esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 320 (509)
..|. +..+++.++. + ...+.+ ..+.+.+. ++.-++....++..++++.+...+...++.
T Consensus 205 ~~~P~-L~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY 271 (432)
T PF06963_consen 205 NSVPA-LAVKKRSSES-----------E-SSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLY 271 (432)
T ss_pred HhChH-hcCCCCCccc-----------c-ccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHH
Confidence 1221 1111110000 0 000000 00000000 000011122344555555443333333222
Q ss_pred HHHHhHhhhccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHH---Hhccch
Q 040646 321 GFGIGMVYYGMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCV---VMGKIW 394 (509)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~---~~~~~~ 394 (509)
....++ -..+.-|+...|.+....+.. ..+.++.|+++..++.+|+|..+.-.++......+..+.. +.+...
T Consensus 272 ~TVLsf-~~lmt~yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~ 350 (432)
T PF06963_consen 272 FTVLSF-GGLMTAYLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSP 350 (432)
T ss_pred HHHhcC-cHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 221221 122233444558887666544 4467888899999999999988877666654444333222 222211
Q ss_pred -hHHHHH----HHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646 395 -TSVEIG----LELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL 450 (509)
Q Consensus 395 -~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 450 (509)
...... ..++.-++.-..--....+..|..|+++||+..|+-+...++...+.-.+
T Consensus 351 ~~~~s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 351 FSSISAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred chhhHHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11222233322333567788999999999999999888776665544333
No 230
>TIGR00896 CynX cyanate transporter. This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.
Probab=98.67 E-value=1.1e-07 Score=91.87 Aligned_cols=127 Identities=13% Similarity=0.109 Sum_probs=96.4
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
|.+.++.|. +..+.+.+.+...++..++.++.|++.|| + +||+.+..+..+.+++.++..+.++..... .-++.
T Consensus 221 p~~~~~~g~---~~~~~g~~~~~~~~~~i~~~~~~g~l~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~ 295 (355)
T TIGR00896 221 PAILISHGA---SAATAGSLLALMQLAQAASALLIPALARR-VKDQRGIVAVLAVLQLVGLCGLLFAPMHGLWA-WALVL 295 (355)
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHhHHHHHhh-hccchHHHHHHHHHHHHHHHHHHHhhhhHHHH-HHHHH
Confidence 444456677 44478999999999999999999999999 9 567777788888888777777665433332 45678
Q ss_pred hhccchhhhhheeeeEeecc-CcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc
Q 040646 172 GFGRATIGTCAIVLSTELVG-KKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS 224 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~ 224 (509)
|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+ +++.++.|
T Consensus 296 g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 296 GLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999988887776665554 5667888898888888888889888 66666543
No 231
>KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.4e-07 Score=86.93 Aligned_cols=131 Identities=14% Similarity=0.079 Sum_probs=106.6
Q ss_pred HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchh
Q 040646 348 FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTC 427 (509)
Q Consensus 348 ~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 427 (509)
...+.+++.+++.|.+.||+|+|..++++..++..+.+++.+.. .....+..-.+-+.+.........+++++.+|.+
T Consensus 114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--sy~~l~vAR~LQgvgsA~~~tsglamlAd~f~~d 191 (464)
T KOG3764|consen 114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--SYPMLFVARSLQGVGSAFADTSGLAMLADVFPED 191 (464)
T ss_pred HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--hhHHHHHHHHHhhhhHHHHHhhhHHHHHHHcccc
Confidence 34478889999999999999999999999999999999988843 3444444445666666677778889999999987
Q ss_pred h-hhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHHhhcc
Q 040646 428 V-RNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 428 ~-r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
. |++++|+.-.+..+|-.++|.+.+ ....+...+|+++++++++...+.+++-
T Consensus 192 ~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi 247 (464)
T KOG3764|consen 192 NERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVI 247 (464)
T ss_pred hhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhee
Confidence 6 699999999999999999999988 3445777889999999888877755443
No 232
>PF13347 MFS_2: MFS/sugar transport protein
Probab=98.59 E-value=9.3e-07 Score=87.63 Aligned_cols=112 Identities=19% Similarity=0.363 Sum_probs=98.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccchhhhhheee
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRATIGTCAIVL 185 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~ 185 (509)
..+.+..+..++..++.+++++++|| +|+|+.+..+.++.+++.++..+.+ |.+.+++.-++.|++.+...+...++
T Consensus 261 ~~~~~~~~~~~~~~v~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~gi~~~~~~~~~~a~ 339 (428)
T PF13347_consen 261 LISIFMLIFFVASIVGSPLWGRLSKR-FGKKKVYIIGLLLAALGFLLLFFLGPGSPWLVLILFILAGIGYGAFFVIPWAM 339 (428)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-ccceeehhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHhhhcccccccccc
Confidence 56778889999999999999999999 9999999999999999999998886 99999999999999999999999999
Q ss_pred eEeeccC-------cccchhhhhhHHHHHHHHHHHHHH-HHHh
Q 040646 186 STELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI-AYIN 220 (509)
Q Consensus 186 i~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~-~~~~ 220 (509)
++|..+. ++.|...+..+....+|..+++.+ +.++
T Consensus 340 ~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l 382 (428)
T PF13347_consen 340 LADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLL 382 (428)
T ss_pred cccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9999873 334778888888888888887776 4443
No 233
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=98.59 E-value=1.2e-06 Score=87.74 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=93.0
Q ss_pred cccccccCCchHH--HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 040646 331 MPLGLGSLSFNLY--LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFS 408 (509)
Q Consensus 331 ~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (509)
+++..+++|.+.. .......+...++.++.|+++|.+|||..++.+.++..++.++..... +....++-..+.+++
T Consensus 67 l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--~~~~~iag~~l~Gvg 144 (599)
T PF06609_consen 67 LPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--NMNTFIAGMVLYGVG 144 (599)
T ss_pred HHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--cHHHHHHHHHHHHHh
Confidence 3555566666533 333444577778888999999999999999999999999988887733 333344444444444
Q ss_pred HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHH
Q 040646 409 ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLF 475 (509)
Q Consensus 409 ~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 475 (509)
.+.. ......++|..|.+.|..+.++..........++|.+... ...++.+.+++.++...++.+.
T Consensus 145 aG~~-~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl 212 (599)
T PF06609_consen 145 AGVQ-ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVL 212 (599)
T ss_pred hHHH-HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHH
Confidence 4333 3445568999999999888777665555555566766652 2334556666655554444443
No 234
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=98.57 E-value=7.2e-07 Score=80.66 Aligned_cols=342 Identities=12% Similarity=0.044 Sum_probs=188.8
Q ss_pred HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccch
Q 040646 118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQ 197 (509)
Q Consensus 118 ~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~ 197 (509)
-.+.+.-.+.=.+.|- .-.|+++++-.+.......+..+.++.+.+=+.-+..|...+ ...+-++++-+..+|+++.+
T Consensus 53 YSYLv~LvpvFlLTD~-lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tA-aEIAYysYIYs~Vd~~~Yqr 130 (433)
T KOG3810|consen 53 YSYLVGLVPVFLLTDY-LRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATA-AEIAYYSYIYSKVDPEMYKR 130 (433)
T ss_pred HHHHHHHHHHHHHhhh-hhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHH-HHHhhhheeeeecCHHHHHH
Confidence 3445555666678898 888999988888888888888899999999999999999865 57778999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCC---cchHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhc
Q 040646 198 VGSIGFFCFTLGFLSLPAIAYINRGS---SWRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSE 274 (509)
Q Consensus 198 ~~~~~~~~~~~G~~~~~~~~~~~~~~---~wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~ 274 (509)
+.+.-.+..-.|-..|..++-++-.. +.+..-.+ .+....++.....++|..++-+.-+.+.++.
T Consensus 131 vt~y~RaA~L~g~~~g~vlaQlLvs~~~~sy~~LN~I-SL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~----------- 198 (433)
T KOG3810|consen 131 VTGYCRAAFLVGKFVGSVLAQLLVSLETLSYTTLNYI-SLAEVTIAVLLALFLPRVKRSLYFHRLEDKI----------- 198 (433)
T ss_pred HHHHhHHHHHHHhHHHhHHHHHHhhhcccchhhhchh-hHHHHHHHHHHHhhCCCCchhhhhhcccccc-----------
Confidence 99999888888888888886443222 23332223 2333333445567788766433322222210
Q ss_pred CCccccccccCcccccccc------cccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC-CchH----H
Q 040646 275 NQRSLIMDFNNVSFEQETW------NVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL-SFNL----Y 343 (509)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~----~ 343 (509)
+ ..+.++...+.+.. -..-+..+.+..++|..+...+-..+...+..-..++....-++. .-+. .
T Consensus 199 ~----v~~~e~~~~~~~~~~~l~~~~~~l~~~l~~~y~np~ll~WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG 274 (433)
T KOG3810|consen 199 S----VGDLEEMNPQASYMSYLRGAFVLLWRDLQECYSNPRLLKWSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNG 274 (433)
T ss_pred e----eccchhcCccchhhHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcC
Confidence 0 00001111000000 011122445556666654444433333333333322222222222 1111 1
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646 344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL 423 (509)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
..-.+..+.+.++.+..|.+.-.+.|..-+.++......+..++.....+..+...+..++.........++....+++.
T Consensus 275 ~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~iA~n 354 (433)
T KOG3810|consen 275 AVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQIARN 354 (433)
T ss_pred HHHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHHHHHh
Confidence 12233446667778888888766666533332222222222223332233444444444444444444555566666677
Q ss_pred cchhhhhhHHHHHHHHHhHhhHHHHHHHHh----h------cccchhHHHHHHHHHHHHHHHHh
Q 040646 424 FPTCVRNSAISMVRQALVFGGVFSPVLVAA----G------RQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 424 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
...+.-|..+|++.++.-+-..+-..+.-. . ..-+...|.+++++.++......
T Consensus 355 L~~e~~gLvFGiNTFvAl~lQsilT~iVvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~ 418 (433)
T KOG3810|consen 355 LSSELFGLVFGINTFVALILQSILTLIVVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEY 418 (433)
T ss_pred hhhhhheeeeehHHHHHHHHHHhheEEEEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHH
Confidence 777777888888877665544433333211 0 01223456777777766655433
No 235
>PRK09669 putative symporter YagG; Provisional
Probab=98.55 E-value=2.6e-06 Score=84.91 Aligned_cols=115 Identities=18% Similarity=0.243 Sum_probs=87.4
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHhhccchhhhhheeee
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF--STNMWIYSVLRFINGFGRATIGTCAIVLS 186 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 186 (509)
.+.+.....++..++.+++++++|| +|+|+.+..+.++.++..+...+ .++.+.+++..++.|++.+...+...+++
T Consensus 266 ~~~~~~~~~i~~ii~~~~~~~l~~r-~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~am~ 344 (444)
T PRK09669 266 ATLFLVTGMIAGLFGALLSERLLGK-FDRVRAFKWTIVAFVILSALIFFIPPSNVWLIFALNILFNFIQNLTTPLQWSMF 344 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666778888899999999999 99999998888766654443333 35677788888999999999999999999
Q ss_pred EeeccC-------cccchhhhhhHHHHHHHHHHHHHH-HHHhcCCc
Q 040646 187 TELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSS 224 (509)
Q Consensus 187 ~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~ 224 (509)
+|..+. +..|...+.......+|..+++.+ +.+.+..|
T Consensus 345 ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 345 SDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 998862 223556788888888898888887 45544333
No 236
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=98.55 E-value=3.2e-07 Score=86.40 Aligned_cols=130 Identities=26% Similarity=0.447 Sum_probs=108.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHhhccchhhhhheee
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--MWIYSVLRFINGFGRATIGTCAIVL 185 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~ 185 (509)
+.++..+.+.++..+++++.|.++|| +|||+.+..+.....++.++.++..+ .+.+++.|++.|++.+...+...++
T Consensus 40 ~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 118 (338)
T COG0477 40 LYGLLLSAFFLGYAIGSLLAGPLGDR-YGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASAL 118 (338)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhcccc-ccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 57999999999999999999999999 99998888888776666777777776 8999999999999999999999999
Q ss_pred eEeeccC-cccchhhhhhHH-HHHHHHHHHHHHHHHh---cCCcchHHHHHHHhhHHH
Q 040646 186 STELVGK-KRRGQVGSIGFF-CFTLGFLSLPAIAYIN---RGSSWRRIYLYTSIPTIL 238 (509)
Q Consensus 186 i~e~~~~-~~r~~~~~~~~~-~~~~G~~~~~~~~~~~---~~~~wr~~f~~~~~~~~~ 238 (509)
+.|+.|+ ++|+...+.... ...+|..+++.++... ...+||..|.+.......
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 119 LSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 9999987 678888888888 5778888888664322 235799966666555544
No 237
>KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism]
Probab=98.53 E-value=6.4e-08 Score=91.16 Aligned_cols=138 Identities=12% Similarity=-0.010 Sum_probs=99.9
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646 344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL 423 (509)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.......+...+.+++.|++.||++|++++.++..+-.++.+...+. ...+.....-.+.+++.....++...+++|.
T Consensus 72 ll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs--~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~ 149 (493)
T KOG1330|consen 72 LLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS--NHFWQVLLCRGFVGIGEASYSPIAPSLIADS 149 (493)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH--HHHHHHHHHHHHhccchhhhcccchhHhhhc
Confidence 34455567788899999999999999999999998888888877774 3344444444555677777888999999999
Q ss_pred cchhhhhhHHHHHHHHHhHhhHHHHHHHH---hhcccchhHHHHHHHHHHHHHHHH-hhccCCC
Q 040646 424 FPTCVRNSAISMVRQALVFGGVFSPVLVA---AGRQNNFLSYGIFGLVIGLCGLFV-IGLPETR 483 (509)
Q Consensus 424 ~p~~~r~~~~g~~~~~~~~g~~i~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 483 (509)
+|..+|++++++.+....+|..+|-.... ....++.+.+...+++.++..++. ++.+|.+
T Consensus 150 f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~ 213 (493)
T KOG1330|consen 150 FPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPE 213 (493)
T ss_pred CcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence 99999999999999988777665544433 112224555666666666666554 4444443
No 238
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.50 E-value=4e-06 Score=82.53 Aligned_cols=133 Identities=11% Similarity=0.059 Sum_probs=106.6
Q ss_pred HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccch
Q 040646 347 TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPT 426 (509)
Q Consensus 347 ~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 426 (509)
.....+.+++.+.++++.||+|-|+++..+.++.+++.++..+......+..+++-++.+++.+..++....+..+-.|+
T Consensus 80 ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~ 159 (466)
T KOG2532|consen 80 SSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAKWAPP 159 (466)
T ss_pred HHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeeeECCH
Confidence 33447888999999999999999999999999999998888876554444555666777788888999999999999999
Q ss_pred hhhhhHHHHHHHHHhHhhHHHHHHHHhh---cccchhHHHHHHHHHHHHHHHHhhc
Q 040646 427 CVRNSAISMVRQALVFGGVFSPVLVAAG---RQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 427 ~~r~~~~g~~~~~~~~g~~i~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
+.|++..++......+|.+++-.+.+.. ..++...|++.+++.++..++.+++
T Consensus 160 ~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 160 NERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988777666622 2456777888888877766665433
No 239
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=98.46 E-value=1.3e-05 Score=79.31 Aligned_cols=141 Identities=13% Similarity=0.099 Sum_probs=105.7
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcc
Q 040646 342 LYLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTL 421 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (509)
......+..++.+++.+.++.+.||++-.+.+....++..+..++-.. .++.+..+++-++.++..+..+|....++.
T Consensus 83 l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~--~~s~~~~ialr~llGl~es~~wP~~~~~lg 160 (495)
T KOG2533|consen 83 LGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA--VHSFPGLIALRFLLGLFESGGWPGVVAILG 160 (495)
T ss_pred hhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 445566667889999999999999999666555554444444333333 334455566667777888889999999999
Q ss_pred cccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--------hcccchhHHHHHHHHHHHHHHHH-hhccCCCC
Q 040646 422 ELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--------GRQNNFLSYGIFGLVIGLCGLFV-IGLPETRD 484 (509)
Q Consensus 422 ~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 484 (509)
..+.++.|+.-+|+.+....+|+++++++... ...++.+.|++-+++.++..++. +++|+...
T Consensus 161 ~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 161 NWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred hhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 99999999999999999999999999888764 34567788889888887777664 56775444
No 240
>KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only]
Probab=98.46 E-value=3.4e-06 Score=85.51 Aligned_cols=138 Identities=17% Similarity=0.144 Sum_probs=101.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 343 YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
........++..++.++.|+++|++|||+.+..+.+...++.++..... +...+...-++.+++.+....+...+.+|
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--~~~~l~~GR~l~G~g~G~~~~~~piy~sE 169 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--SWYQLIVGRILTGLGVGGASVLAPVYISE 169 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHhccchhhhhhcchhhHhh
Confidence 3555666788999999999999999999999999999999988888844 44444444566667777777788899999
Q ss_pred ccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc---cchhHHHHHHHHHHHHHHHHhhccCC
Q 040646 423 LFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ---NNFLSYGIFGLVIGLCGLFVIGLPET 482 (509)
Q Consensus 423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (509)
..|++.||...+..+....+|..++-.+...... ++...+.+..+.+++..+..+++||+
T Consensus 170 iap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pes 232 (513)
T KOG0254|consen 170 IAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPES 232 (513)
T ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998888887777333332221 34444444444444444445666764
No 241
>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]
Probab=98.46 E-value=6.2e-07 Score=85.82 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=99.0
Q ss_pred CCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHH
Q 040646 338 LSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMG-KIWTSVEIGLELVAFFSACTA 412 (509)
Q Consensus 338 ~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 412 (509)
+|++...+..+.+ ...-...+++||++|| +|+|+++..+.++.+++.+++.... .......+.+.++. .+.+..
T Consensus 56 Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~-iG~Gl~ 134 (498)
T COG3104 56 LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALII-VGTGLF 134 (498)
T ss_pred CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHH-hccccc
Confidence 5577666655444 2223467889999999 5999999999999999998888853 22233333333333 555555
Q ss_pred hHHHHhhcccccchhh--hhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHhhcc
Q 040646 413 FSLLLIYTLELFPTCV--RNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVIGLP 480 (509)
Q Consensus 413 ~~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
=+....+..|.+|++. |..++++.++..++|++++|++.+.. ..++...|...++...++.+.++..+
T Consensus 135 K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~ 206 (498)
T COG3104 135 KPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGR 206 (498)
T ss_pred cccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcc
Confidence 5677888999997643 67778888888899999999999833 34455566677776666666655554
No 242
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=98.44 E-value=3.5e-05 Score=73.87 Aligned_cols=270 Identities=12% Similarity=0.110 Sum_probs=129.6
Q ss_pred HhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcC--------------Ccc---hHHHHHHH
Q 040646 171 NGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRG--------------SSW---RRIYLYTS 233 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~--------------~~w---r~~f~~~~ 233 (509)
.=+-.+.--.++-.+.-....+++++.+......+.+.|..++..+-..+++ .|. .....+.|
T Consensus 128 L~fl~ATQDIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlalns~~f~Nky~r~~p~~~glvtl~~yl~fwg 207 (544)
T PF13000_consen 128 LVFLCATQDIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALNSPDFCNKYLRSTPSDEGLVTLSGYLKFWG 207 (544)
T ss_pred HHHHHccCCceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhCCHHHHHHhcccCCCCCCeeeHHHHHHHHH
Confidence 3333444555555555566677888888777777777777666544222211 111 12233445
Q ss_pred hhHHHHHHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcc---cccccccccchhHHHHHHhchHH
Q 040646 234 IPTILYCILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVS---FEQETWNVDLYSAIKILVEKKWA 310 (509)
Q Consensus 234 ~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~ 310 (509)
...++..+...++-+|.|.-.. ..+.+.... .+.+.++...+.++.+ .++...-.+....+.++++-|..
T Consensus 208 ~~~l~~T~~v~~~k~E~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Y~~l~~ilkLp~V 280 (544)
T PF13000_consen 208 WVFLIVTILVAFFKKEKPHSES-LPKIEPINK------SDGKSKEISIEYDESDVISTEEILSIKDVYKSLWKILKLPNV 280 (544)
T ss_pred HHHHHHHHHHheEeeccccccc-Ccccccccc------ccccccccceecccccccchhhhhhHHHHHHHHHHHHcCchH
Confidence 5555555555666777652100 000000000 0000000011111111 00111112234455667777776
Q ss_pred HHHHHHHHHHHHHHhHhhhccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhc--Cchh-----------------
Q 040646 311 LRRLSAIMVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKL--KRKS----------------- 371 (509)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~--gr~~----------------- 371 (509)
+...++....-++....--...+-+-+.|++..... +..+..++..++.++++-|+ |+++
T Consensus 281 ~~li~ilL~~KigF~a~da~T~LKLlEkG~~KE~LA-l~~li~~P~qii~~~~~~Kws~g~~P~~~~~~~l~~~~~~~~~ 359 (544)
T PF13000_consen 281 QTLIIILLTAKIGFQANDAVTSLKLLEKGLSKEDLA-LLVLIDFPFQIILPYYIGKWSAGSPPLDVDNKALPNFSRANKI 359 (544)
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHcCCCHHHhH-HHHHHhhhHHHHHHHHhhhhhcCCCccccccccccccccccch
Confidence 665555555555544444444455556677643333 33466677777777776665 2221
Q ss_pred ------------HHHHHHHHHHHHH----HHHHHhccch--hHHHHHH----HHHHHHHHHHHhHHHHhhcccccchhhh
Q 040646 372 ------------SLLGFTIMSGVCS----VLCVVMGKIW--TSVEIGL----ELVAFFSACTAFSLLLIYTLELFPTCVR 429 (509)
Q Consensus 372 ------------~~~~~~~~~~~~~----~~~~~~~~~~--~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~r 429 (509)
....+...-.++. ......+.+. +..+..+ -++..+.....+....++-+.+.+|..-
T Consensus 360 ~~~l~g~~g~L~~Wl~af~gRL~~a~l~~~iV~~fP~~g~v~~~Yf~lvI~~~~l~sf~stvmFVai~AFharISDP~IG 439 (544)
T PF13000_consen 360 IRLLVGDAGALRPWLWAFWGRLVAALLAQLIVYFFPSDGPVPTYYFLLVIIQHVLSSFMSTVMFVAIMAFHARISDPAIG 439 (544)
T ss_pred hhhhhccchhhHHHHHHHHHHHHHHHHHHheEEeCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccc
Confidence 1111111111111 1111122111 1112221 2223344444555677888889999999
Q ss_pred hhHHHHHHHHHhHhhHHHH
Q 040646 430 NSAISMVRQALVFGGVFSP 448 (509)
Q Consensus 430 ~~~~g~~~~~~~~g~~i~p 448 (509)
|+.+.+.|+..++|+-...
T Consensus 440 GTYMTLLNTvSNLGGtWP~ 458 (544)
T PF13000_consen 440 GTYMTLLNTVSNLGGTWPR 458 (544)
T ss_pred hHHHHHHHHHHhcCCCchH
Confidence 9999999999999986443
No 243
>KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.44 E-value=1.4e-06 Score=76.72 Aligned_cols=139 Identities=14% Similarity=0.126 Sum_probs=100.6
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHh
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS-CLLTIFSTNMWIYSVLRFING 172 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~-~~~~~~~~~~~~l~~~r~l~G 172 (509)
-.++.||++. ...+-+.+....-.++.+++.|.++|| +|++.+.+.+..+..+. -.+..| +++.=.++..+.|
T Consensus 290 fF~~rfGlS~---~~a~~i~s~vy~Isav~spvfg~i~Dk-~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lG 363 (459)
T KOG4686|consen 290 FFQKRFGLSA---VSAGNILSTVYGISAVLSPVFGAISDK-YGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLG 363 (459)
T ss_pred HHHHhhCCCh---hhccchhhhhhhhhhhhhhhHHHhHhh-hcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHh
Confidence 4578899954 456888888888888999999999999 99998777665544333 222222 3444456677888
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc---chHH-HHHHHhhHHH
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS---WRRI-YLYTSIPTIL 238 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~---wr~~-f~~~~~~~~~ 238 (509)
+............++-..|+++.|++.|..+...++|..+.|+++ .+.++.| |--. |++.+..++.
T Consensus 364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~ 434 (459)
T KOG4686|consen 364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALT 434 (459)
T ss_pred hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHH
Confidence 887777666777788888989999999999999999999999994 5554433 4333 4444444444
No 244
>KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism]
Probab=98.42 E-value=9.2e-07 Score=83.30 Aligned_cols=128 Identities=18% Similarity=0.287 Sum_probs=99.5
Q ss_pred HHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHhhccchhhhhheeeeEeec
Q 040646 119 GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN--------MWIYSVLRFINGFGRATIGTCAIVLSTELV 190 (509)
Q Consensus 119 ~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~--------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 190 (509)
++..|-.+...++|+ .|||++.+.+.+++++..+..+...| ...+.+..++.-+| -......+-+|.+
T Consensus 360 ~~vPGyw~tv~~id~-iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFG---Pn~ttfivpaE~F 435 (538)
T KOG0252|consen 360 STVPGYWFTVYFIDI-IGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFG---PNATTFIVPAEIF 435 (538)
T ss_pred ccCCceeEEEEEeeh-hhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcC---CCceeEEeehhhc
Confidence 344467788899999 99999999999999999999888776 12233333444444 3334456678999
Q ss_pred cCcccchhhhhhHHHHHHHHHHHHHH-HHHhc-----CCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 191 GKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR-----GSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 191 ~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~-----~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
|.+-|+..-|+..+..-+|.+++... .++.. ..+-|..+++.+...++ .++.-+++||+.
T Consensus 436 ParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~-gi~~T~l~pEtk 501 (538)
T KOG0252|consen 436 PARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLL-GILFTLLIPETK 501 (538)
T ss_pred hHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHH-hHheeEEeeccc
Confidence 99999999999999999999988876 66666 67889999999988887 456668889984
No 245
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.2e-05 Score=70.17 Aligned_cols=88 Identities=22% Similarity=0.234 Sum_probs=65.6
Q ss_pred ceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 040646 94 SIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGF 173 (509)
Q Consensus 94 ~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~ 173 (509)
.+-+.++.- +.++|.+.-..+-...+...+.|-++|+ .|||+.-+.-++.+.+++ +.-.++.|-.++++|.+-|+
T Consensus 62 yLYstYgFg---kG~IgqLfiaGfgSsmLFGtivgSLaDk-qGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGi 136 (454)
T KOG4332|consen 62 YLYSTYGFG---KGDIGQLFIAGFGSSMLFGTIVGSLADK-QGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGI 136 (454)
T ss_pred eeehhcCcc---CCccceeeecccchHHHHHHHHHHHHhh-hccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhH
Confidence 344556663 3367777666667777788889999999 999997666555555544 34467889999999999999
Q ss_pred ccchhhhhheeee
Q 040646 174 GRATIGTCAIVLS 186 (509)
Q Consensus 174 ~~g~~~~~~~~~i 186 (509)
+.+..+...-++.
T Consensus 137 aTsLLFSaFEsWl 149 (454)
T KOG4332|consen 137 ATSLLFSAFESWL 149 (454)
T ss_pred HHHHHHHHHHHHH
Confidence 9999888776654
No 246
>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon. It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.
Probab=98.38 E-value=1.5e-05 Score=74.90 Aligned_cols=146 Identities=15% Similarity=0.152 Sum_probs=115.5
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS---TNMWIYSVLR 168 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~l~~~r 168 (509)
.|.=.+-||++.. +...+......|..++....|++..|+.++|+...+++....++..+..++ .+.+.+...-
T Consensus 232 EPygg~Vfgmsv~---eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~~~~~~~~~ 308 (403)
T PF03209_consen 232 EPYGGEVFGMSVG---ETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGSPWLFRPGV 308 (403)
T ss_pred CCchhHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHH
Confidence 3555667888655 678888999999999999999988865999998888888887777665443 5788999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHH--------hc---CCcchHHHHHHHhhHH
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI--------NR---GSSWRRIYLYTSIPTI 237 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~--------~~---~~~wr~~f~~~~~~~~ 237 (509)
++.|++.|.......+.+.+...+++.|..+|.+.....++.-++..++.. .. ..++-.+|.+.++..+
T Consensus 309 ~l~G~g~G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~ 388 (403)
T PF03209_consen 309 FLLGLGNGLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLL 388 (403)
T ss_pred HHHHHhhhHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887776666666322 11 2456777777777666
Q ss_pred HHH
Q 040646 238 LYC 240 (509)
Q Consensus 238 ~~~ 240 (509)
+..
T Consensus 389 ~a~ 391 (403)
T PF03209_consen 389 AAL 391 (403)
T ss_pred HHH
Confidence 543
No 247
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=98.33 E-value=0.00038 Score=68.31 Aligned_cols=106 Identities=16% Similarity=0.008 Sum_probs=58.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCch-hHHHHHHHHHHHHHHHHHHh--c--------cchhHHHHHHHHHHHHHHHHH
Q 040646 344 LSVTFNALSELPASLITFFLIGKLKRK-SSLLGFTIMSGVCSVLCVVM--G--------KIWTSVEIGLELVAFFSACTA 412 (509)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~-~~~~~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~~~ 412 (509)
....+..++.++|+.+..+.. .-++| +.+.+..+.=.+..-++.+. . -.+.+..+.+.++.++..+..
T Consensus 311 i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltnGy~ 389 (437)
T TIGR00939 311 ICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSNGYL 389 (437)
T ss_pred HHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhhhHH
Confidence 445556688888888665431 11222 12222222222222222111 1 012344444455555656666
Q ss_pred hHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646 413 FSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL 450 (509)
Q Consensus 413 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 450 (509)
.+....+.++..++++|..+-.+......+|-.+|..+
T Consensus 390 ~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 390 GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777888999998888888777777777776666554
No 248
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=98.31 E-value=2.9e-06 Score=79.98 Aligned_cols=124 Identities=13% Similarity=0.141 Sum_probs=93.6
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhcccc---CCCchHHHH-HHHHHHHHHHHHHHHHhHH------
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADS---SLGRKNMLF-LSCLMMSVSCLLTIFSTNM------ 161 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr---~~Grr~~l~-~~~~~~~i~~~~~~~~~~~------ 161 (509)
.|+...+.|+. ....+.+--...+...+.+|+.|..+|| ||||||.++ .+.++..++.++..++.++
T Consensus 55 ~tPyl~~lGvp---hk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd 131 (498)
T KOG0637|consen 55 LTPYLQSLGVP---HKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGD 131 (498)
T ss_pred ccHHHHHcCCC---cccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcC
Confidence 57777788884 3356666667777788899999999998 899976654 4556667777777777653
Q ss_pred -----------HHHHHHHHHHhhccchhhhhheeeeEeeccCcccch-hhhhhHHHHHHHHHHHHHHHH
Q 040646 162 -----------WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQ-VGSIGFFCFTLGFLSLPAIAY 218 (509)
Q Consensus 162 -----------~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~~~~~~~~ 218 (509)
..++++--+.-++.-.....+-+++.|...++++.+ +++++....++|..+|..++.
T Consensus 132 ~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 132 NERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred CcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 244455555666766778888899999998776666 999999999999988887753
No 249
>PRK11462 putative transporter; Provisional
Probab=98.28 E-value=5.5e-05 Score=75.52 Aligned_cols=107 Identities=17% Similarity=0.201 Sum_probs=71.7
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHhhccchhhhhheeee
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST--NMWIYSVLRFINGFGRATIGTCAIVLS 186 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i 186 (509)
.+.+.+.+.++..++.+++++++|| +|+|+.+..+..+.++..++..+.+ +...+++.-++.|++.+...+...+++
T Consensus 265 ~~~~l~~~~i~~iig~~l~~~l~~r-~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~l~~~m~ 343 (460)
T PRK11462 265 FVAFLTTYCVGNLIGSALAKPLTDW-KCKVTIFWWTNALLAVISLAMFFVPMQASITMFVFIFVIGVLHQLVTPIQWVMM 343 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888899999999999999 9999988765555444444433332 233344455667887777777667777
Q ss_pred EeeccC-------cccchhhhhhHHHHHHHHHHHHHH
Q 040646 187 TELVGK-------KRRGQVGSIGFFCFTLGFLSLPAI 216 (509)
Q Consensus 187 ~e~~~~-------~~r~~~~~~~~~~~~~G~~~~~~~ 216 (509)
+|..+. ++.|...+......-+|..+++.+
T Consensus 344 ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i 380 (460)
T PRK11462 344 SDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGAL 380 (460)
T ss_pred HHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 777652 222444566666677777777766
No 250
>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins.
Probab=98.25 E-value=3.7e-05 Score=68.67 Aligned_cols=119 Identities=12% Similarity=0.046 Sum_probs=78.8
Q ss_pred ccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc-----hhHHHHHHHH
Q 040646 332 PLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI-----WTSVEIGLEL 403 (509)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 403 (509)
|.+.+.++.+......+.. ++..+ .+..|.+.|++|.+.++.++.+...++...+...... ..+....+..
T Consensus 26 ~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~ 104 (250)
T PF06813_consen 26 PQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLF 104 (250)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHH
Confidence 4455567887666554443 44444 4788999999999999999999888888777664221 1222222222
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
+++.+.............+.+| ++||++.|+.-....+++.+...+..
T Consensus 105 l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~ 152 (250)
T PF06813_consen 105 LGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYS 152 (250)
T ss_pred HHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHH
Confidence 3322222223344455668888 57999999999999998888777766
No 251
>TIGR00788 fbt folate/biopterin transporter. The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.
Probab=98.18 E-value=2.4e-06 Score=85.26 Aligned_cols=121 Identities=12% Similarity=0.004 Sum_probs=101.5
Q ss_pred eeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH----------hHHHHHHH
Q 040646 97 SEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS----------TNMWIYSV 166 (509)
Q Consensus 97 ~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~----------~~~~~l~~ 166 (509)
+.+|. +..+.|.+.....++..++....+++.+| ++.|+++.++.++.+++.+..... ++.+.++.
T Consensus 281 ~~lG~---s~~~~G~~~~~~~v~~i~g~~~~~~~~~~-~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~ 356 (468)
T TIGR00788 281 QCLPG---GPSFSGMSKVVGNLGSLCGVGGYDRFLKT-FPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLG 356 (468)
T ss_pred ccCCC---CcchhhhHHHHHHHHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeee
Confidence 35677 44589999999999999999999999999 999999999999998887654311 33445556
Q ss_pred HHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhc
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINR 221 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~ 221 (509)
.-++.+++.+........++.+..|++++|...+++....++|..+++.++ .+.+
T Consensus 357 ~~~l~~~~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~ 412 (468)
T TIGR00788 357 DSIIAEVLAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLME 412 (468)
T ss_pred hhHHHHHHHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678889999999999999999999999999999999999999999999874 4443
No 252
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=98.15 E-value=0.00031 Score=64.95 Aligned_cols=291 Identities=13% Similarity=0.096 Sum_probs=147.7
Q ss_pred Hhhhhhccc-----cCCCchHHHHH-HHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHhhccchhhhhheeee
Q 040646 124 GLILATLAD-----SSLGRKNMLFL-SCLMMSVSCLLTIF-----------STNMWIYSVLRFINGFGRATIGTCAIVLS 186 (509)
Q Consensus 124 ~~~~g~l~d-----r~~Grr~~l~~-~~~~~~i~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i 186 (509)
-+.+.++.| | +||||.-++ +..+.+....+.+. .++...+....++.-+..+..-.+.-.+.
T Consensus 80 KllWaPiVDs~y~k~-~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwA 158 (510)
T KOG3574|consen 80 KLLWAPIVDSVYSKR-FGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWA 158 (510)
T ss_pred HHHHHhhhHHHHHHh-hccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 357888888 8 999876433 33333333333332 12333444444556666666667766776
Q ss_pred EeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcC--------Ccch---------HHHHHHHhhHHHHHHHhheeecC
Q 040646 187 TELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRG--------SSWR---------RIYLYTSIPTILYCILVRFLVRE 249 (509)
Q Consensus 187 ~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~--------~~wr---------~~f~~~~~~~~~~~~~~~~~~~e 249 (509)
-....+++-|.+......+...|.+++..+-..... .+|. ...++.+.+.++...+..+.-+|
T Consensus 159 LtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke 238 (510)
T KOG3574|consen 159 LTMLSRENLGYASTCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKE 238 (510)
T ss_pred HHhcCHhhcCchhHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 777778888888777777777777666543111110 1221 12333344444433333332233
Q ss_pred chHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhh
Q 040646 250 SPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYY 329 (509)
Q Consensus 250 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (509)
.+.. ..+| .+...++...-++++++-|..+....+....-++....-.
T Consensus 239 ~~~~-----~~~e---------------------------~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~gf~a~da 286 (510)
T KOG3574|consen 239 NDES-----VDEE---------------------------LELGIHESYKLLRDVLKLKSVRWLAGILLTGKLGFQAADA 286 (510)
T ss_pred Cchh-----hhhh---------------------------hhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHHhhhhhh
Confidence 2210 0000 0011111223466777777665555555554455554445
Q ss_pred ccccccccCCchHHHHHHHHHhhhhhHHHHHHHHhhhcC--chhH--------HHHHHHHHHHHHHHHHHhc---c---c
Q 040646 330 GMPLGLGSLSFNLYLSVTFNALSELPASLITFFLIGKLK--RKSS--------LLGFTIMSGVCSVLCVVMG---K---I 393 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l~dr~g--r~~~--------~~~~~~~~~~~~~~~~~~~---~---~ 393 (509)
..++-+-+.|.+......+. +..++..++.++...|+. .|++ ..+.... ....+....+ . .
T Consensus 287 ~t~LkLle~Gv~ke~Lal~~-v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~--~~t~Lv~~~~~~~~~~G~ 363 (510)
T KOG3574|consen 287 LTSLKLLEHGVPKEELALIA-VPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGL--VQTALVWWTPTLGHSDGT 363 (510)
T ss_pred ccchHHHHcCCChhHheeee-eehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHH--HHHHHHhhhcccccCCCc
Confidence 55666667777654433322 555666666666655542 2221 1111111 1111112211 1 0
Q ss_pred hhHHHHHH----HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646 394 WTSVEIGL----ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL 450 (509)
Q Consensus 394 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 450 (509)
.+....++ ..+........+...++..+++.|+...|+.+.+.|+..++|+-.-..+
T Consensus 364 ~~~~~~il~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv 424 (510)
T KOG3574|consen 364 FPRGYYILLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTV 424 (510)
T ss_pred eeechHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHH
Confidence 01111111 1222233333444567888999999999999999999999987644333
No 253
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=98.14 E-value=2.8e-06 Score=60.98 Aligned_cols=72 Identities=21% Similarity=0.329 Sum_probs=65.4
Q ss_pred CCCcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040646 90 QAHTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYS 165 (509)
Q Consensus 90 ~~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~ 165 (509)
|.+|.+++|.++ +..+.|++.+..++||.+|++...++.++ ..+++.+..+++...+..+.+++.++.+.+.
T Consensus 13 plLP~M~~~~~l---s~~~ag~lasaNy~GYL~GAl~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ma~~~~~~~w~ 84 (85)
T PF06779_consen 13 PLLPLMQADGGL---SLSQAGWLASANYLGYLVGALLASRLPRH-SRPRRLLRAGLLLTVLSTAAMALTHSFWLWS 84 (85)
T ss_pred hHhHHHHHhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHhchHHHh
Confidence 459999999999 44589999999999999999999999999 8999999999999999999999998877653
No 254
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=98.12 E-value=2.5e-05 Score=71.78 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=114.7
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+-.|-|+ |+.+.|++.+...+.....++....+++|+-++|+..+....++.++.+.+.+.+.-..+.- -++.
T Consensus 231 LP~ili~~G~---sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw-~~ll 306 (395)
T COG2807 231 LPAILIDRGL---SAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAPGQLPILW-ALLL 306 (395)
T ss_pred HHHHHHHcCC---CHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhhHHHHH-HHHH
Confidence 7899999999 55589999999999999999999999997567888888888888888888888775443333 4899
Q ss_pred hhccchhhhhheeeeEeeccCcc-cchhhhhhHHHHHHHHHHHHHH-HHHhc-CCcchHHHHHHHhhHHHHHHHhh
Q 040646 172 GFGRATIGTCAIVLSTELVGKKR-RGQVGSIGFFCFTLGFLSLPAI-AYINR-GSSWRRIYLYTSIPTILYCILVR 244 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~~~~~~-~~~~~-~~~wr~~f~~~~~~~~~~~~~~~ 244 (509)
|+|.|..++....++.+..++.+ -++..++.+....+=..+||.+ |++-+ ..+|+..+...+...++..+..+
T Consensus 307 G~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 307 GLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred hCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998876544 3455555555544445667777 55543 35799988887777776554443
No 255
>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters. Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=98.11 E-value=4.1e-08 Score=98.16 Aligned_cols=154 Identities=19% Similarity=0.288 Sum_probs=99.4
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH--H---HhH-----H
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI--F---STN-----M 161 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~--~---~~~-----~ 161 (509)
.|.+.++.+.+.. ..... ...+...++.++...+.|| +|||+.++.+..+.+++.+..+ . .++ +
T Consensus 276 ~~~i~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~-~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (451)
T PF00083_consen 276 SPSIFENAGISNS--FLATL---ILGLVNFLGTLLAIFLIDR-FGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSI 349 (451)
T ss_pred ccccccccccccc--ccccc---ccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence 4566666666432 12222 2334444566677799999 9999999999988888777764 1 111 2
Q ss_pred HHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHH
Q 040646 162 WIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 162 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~ 240 (509)
..+....+.......+..+....+..|.+|.+.|++..++......++..+++.+ ..+.+..+-...+.+.+..+++..
T Consensus 350 ~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~ 429 (451)
T PF00083_consen 350 LSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAI 429 (451)
T ss_pred ccceeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHH
Confidence 2222222111112223456667889999999999999999988888888887776 444444442445555566666666
Q ss_pred HHhheeecCch
Q 040646 241 ILVRFLVRESP 251 (509)
Q Consensus 241 ~~~~~~~~esp 251 (509)
+..++++||+.
T Consensus 430 i~~~~~lpET~ 440 (451)
T PF00083_consen 430 IFVYFFLPETK 440 (451)
T ss_pred hheeEEEeeCC
Confidence 67789999983
No 256
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=98.07 E-value=0.015 Score=57.64 Aligned_cols=246 Identities=11% Similarity=0.126 Sum_probs=129.6
Q ss_pred ccchhHHHHHH-HHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHH--h-------------------------
Q 040646 108 IKGLPASSFFM-GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFS--T------------------------- 159 (509)
Q Consensus 108 ~~~~~~s~~~~-~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~--~------------------------- 159 (509)
....+-....+ ...+...+..++++| ++|.+++-+....+.....++++. |
T Consensus 59 ~I~flK~~~vlP~a~~f~~~y~kl~n~-~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~ 137 (491)
T PF03219_consen 59 VIPFLKVWGVLPVAILFTILYSKLSNR-LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGF 137 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHH
Confidence 34555444444 344556788999999 999998876666655555554442 1
Q ss_pred ----HHHHHHHHHHHHhhccchhhh-hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HHHhc---------CCc
Q 040646 160 ----NMWIYSVLRFINGFGRATIGT-CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR---------GSS 224 (509)
Q Consensus 160 ----~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~---------~~~ 224 (509)
+.|.+.+..+..-+-.....+ .-..+..|.++.+|-.|..+++..+.++|.++++.+ .++.. ...
T Consensus 138 i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~ 217 (491)
T PF03219_consen 138 IAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDA 217 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccc
Confidence 123333334443333233333 457788999999999999999999999999988776 44444 134
Q ss_pred chHHHHHHHhhHHHHHH---HhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHH
Q 040646 225 WRRIYLYTSIPTILYCI---LVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAI 301 (509)
Q Consensus 225 wr~~f~~~~~~~~~~~~---~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (509)
|...+.......++.++ ....++.+. ...++.. .....+.++++++.....++
T Consensus 218 ~~~~l~~l~~~v~~~g~~i~~~~~~~~~~-------vl~~~~~-----------------~~~~~~~kk~k~k~s~~es~ 273 (491)
T PF03219_consen 218 WELSLNSLMGIVLILGIVIILLYRYMNKN-------VLTDPRF-----------------YPSAKKKKKKKPKMSLKESF 273 (491)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------ccCcccc-----------------chhhhcccccCCCccHHHHH
Confidence 65443222211111111 111111110 0000000 00000011111222234567
Q ss_pred HHHHhchHHHHHHHHHHHHHHHHhHhhhccccccccC-----CchH--HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHH
Q 040646 302 KILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGSL-----SFNL--YLSVTFNALSELPASLITFFLIGKLKRKSSLL 374 (509)
Q Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~~--~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~ 374 (509)
+.++++|..+.............+...+......++. ..+. +......++..++..++++.+.+|+|-+....
T Consensus 274 k~l~kS~yL~~Ia~lvi~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~Al 353 (491)
T PF03219_consen 274 KLLLKSKYLLCIALLVIAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAAL 353 (491)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 7788888876666666555565555444322111111 1111 11233345555666678889999999877665
Q ss_pred HHHH
Q 040646 375 GFTI 378 (509)
Q Consensus 375 ~~~~ 378 (509)
+.-+
T Consensus 354 itPi 357 (491)
T PF03219_consen 354 ITPI 357 (491)
T ss_pred HhHH
Confidence 5433
No 257
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]
Probab=98.06 E-value=0.00017 Score=67.45 Aligned_cols=123 Identities=12% Similarity=-0.029 Sum_probs=89.2
Q ss_pred ccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI-WTSVEIGLELVA 405 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 405 (509)
.+|.+.+.+..+...+. ...-.+....++..+++.+|+|+|+-++.++.++++++.++.-.... .....+...++.
T Consensus 35 Lip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFil 114 (422)
T COG0738 35 LIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFIL 114 (422)
T ss_pred hHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 34666666666544443 33446677888899999999999999999999999998877643222 222223323344
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
..+.+........++..+.|++....-+.+.+.++.+|.+++|++.+
T Consensus 115 a~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~ 161 (422)
T COG0738 115 ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGS 161 (422)
T ss_pred HhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 45555666677888889998887788889999999999999999887
No 258
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=98.06 E-value=0.0095 Score=57.59 Aligned_cols=129 Identities=9% Similarity=0.096 Sum_probs=87.3
Q ss_pred CcceeeeeccccccccccchhHHHHHH-HHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHh---------H-
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFM-GCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFST---------N- 160 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~-~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~---------~- 160 (509)
+-.+.+.+.++..++....++-+..-+ +..+..++.+.+.++ +.|++++-+.+..+....+++++.- +
T Consensus 46 lR~lKDslvv~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~-lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~ 124 (509)
T COG3202 46 LRSLKDSLVVTRQGAESISFLKTWGVLPSAVIFTIIYQKLLNI-LTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDP 124 (509)
T ss_pred HHHhhhheEeecCcchhhHHHHHHHhchHHHHHHHHHHHHHhh-cCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCH
Confidence 456666777765555567777777777 677888999999999 9999998877777776666666531 1
Q ss_pred ----------------------HHHHHHHHHHHhhccchhhh-hheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-
Q 040646 161 ----------------------MWIYSVLRFINGFGRATIGT-CAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI- 216 (509)
Q Consensus 161 ----------------------~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~- 216 (509)
.|...+..+..-+=...... .-.....|.+..+|-.|..++++.+.+++..++..+
T Consensus 125 ~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~ 204 (509)
T COG3202 125 EFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVT 204 (509)
T ss_pred HHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 12222222222222122222 334566788888888999999999999998888777
Q ss_pred HHHhc
Q 040646 217 AYINR 221 (509)
Q Consensus 217 ~~~~~ 221 (509)
.++..
T Consensus 205 ~~~~k 209 (509)
T COG3202 205 SWLSK 209 (509)
T ss_pred HHHhh
Confidence 45544
No 259
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=98.05 E-value=1.9e-05 Score=64.84 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=90.5
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG 191 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 191 (509)
-.++.+....++.++.+.+.++ +|.|+.++++.+.+.+-.... +-++.+.++.+-.+.|++.+..++..-.++.+..+
T Consensus 42 slai~Y~~~~~s~l~~P~iv~~-lg~K~sm~lg~~~y~~y~~~~-~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 42 SLAILYGSFAISCLFAPSIVNK-LGPKWSMILGSLGYAIYIASF-FYPNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 4555666677888888899999 999999999999987655443 56778899999999999999999999999999999
Q ss_pred CcccchhhhhhHHHHHHHHHHHHHHHHH
Q 040646 192 KKRRGQVGSIGFFCFTLGFLSLPAIAYI 219 (509)
Q Consensus 192 ~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 219 (509)
++.|++-.+++......+.++|.++.++
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~~~ 147 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFLFF 147 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988888888888877543
No 260
>KOG3762 consensus Predicted transporter [General function prediction only]
Probab=98.02 E-value=4.2e-06 Score=80.53 Aligned_cols=136 Identities=15% Similarity=0.147 Sum_probs=117.7
Q ss_pred ccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheee
Q 040646 106 SLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVL 185 (509)
Q Consensus 106 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 185 (509)
+...|.....-..|-++.-++.+++..| +|+-+++.+++....+=.+..++.+|.|+.+-.-+++|+..+..+....+|
T Consensus 405 ~~LfGv~~a~~~~gEI~~~ffs~klI~k-iGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY 483 (618)
T KOG3762|consen 405 KTLFGVVSALCHAGEILFYFFSFKLIEK-IGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISY 483 (618)
T ss_pred ceeeeehhhhhccchHHHHHHHHHHHHH-hcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHH
Confidence 4456666666777777888899999999 999999999999999999999999999999999999999999999999999
Q ss_pred eEeeccCcccchhhhhhHH-HHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646 186 STELVGKKRRGQVGSIGFF-CFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 186 i~e~~~~~~r~~~~~~~~~-~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
++...||+-|..+.++.+. ..++|--+|.++ +.+...++-|..|.+.++.+++..+.
T Consensus 484 ~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~ 542 (618)
T KOG3762|consen 484 ASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLAL 542 (618)
T ss_pred HHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764 457787888888 46677788899999988888875543
No 261
>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function.
Probab=97.79 E-value=0.0086 Score=55.82 Aligned_cols=147 Identities=14% Similarity=0.047 Sum_probs=81.7
Q ss_pred ccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH
Q 040646 336 GSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTA 412 (509)
Q Consensus 336 ~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (509)
++.|++......+.. +...+...+.|.++||+|||+..+..+++..++++.--. ++....+.--+++++.....
T Consensus 62 ~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~---~~~~~L~~GRvlgGiaTSLL 138 (354)
T PF05631_consen 62 ESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS---SNYPVLLLGRVLGGIATSLL 138 (354)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHH
Confidence 456776544433322 556667778899999999999999998888888764333 22333333345555555555
Q ss_pred hHHHH-hhcccc----cchhhhhhHHHHHH-HHHhHhhHHHH----HHHHhhcccchhHHHHHHHHHHHHHHHHh-hccC
Q 040646 413 FSLLL-IYTLEL----FPTCVRNSAISMVR-QALVFGGVFSP----VLVAAGRQNNFLSYGIFGLVIGLCGLFVI-GLPE 481 (509)
Q Consensus 413 ~~~~~-~~~~~~----~p~~~r~~~~g~~~-~~~~~g~~i~p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 481 (509)
++..- -++.|. +|++..+..++... ..+.+-.+.++ .+......+...+|.....+.+++.+++. ..+|
T Consensus 139 fS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~E 218 (354)
T PF05631_consen 139 FSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPE 218 (354)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccc
Confidence 44322 233333 56555555555444 22233333333 33333334455667766666666655543 4456
Q ss_pred CCCC
Q 040646 482 TRDT 485 (509)
Q Consensus 482 ~~~~ 485 (509)
+.+.
T Consensus 219 Nyg~ 222 (354)
T PF05631_consen 219 NYGD 222 (354)
T ss_pred cCCC
Confidence 5443
No 262
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=97.75 E-value=0.00039 Score=67.75 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=68.5
Q ss_pred HHHHhhhhhHHHHHHHHhhhcCc-hhHHHHHHHHHHHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 347 TFNALSELPASLITFFLIGKLKR-KSSLLGFTIMSGVCSVLCVVM---GKIWTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 347 ~~~~~~~~~~~~~~g~l~dr~gr-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
....++..+++++.|+...|.+. |+.++.+.++++++.++.... +....++.+..-++.+++. ......-.|+++
T Consensus 78 aa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~-~n~a~lR~Y~a~ 156 (488)
T KOG2325|consen 78 AASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGV-GNFAVLRAYIAD 156 (488)
T ss_pred HHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCc-ccHHHHHHHHHh
Confidence 33557788889999999999885 777788888888888777432 2222233222233333332 334567788888
Q ss_pred ccchhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 423 LFPTCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 423 ~~p~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
..-.+.|.++++.......+|.++||.+.
T Consensus 157 ~s~~~dR~rA~a~~~~~~vlg~ilGp~~q 185 (488)
T KOG2325|consen 157 ASTVEDRPRAFAATSGGFVLGIILGPTIQ 185 (488)
T ss_pred ccCccchHHHHHHhhhHHHHHHHHhHHHH
Confidence 77778888888877776666666666554
No 263
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=97.66 E-value=0.013 Score=59.55 Aligned_cols=145 Identities=17% Similarity=0.134 Sum_probs=107.9
Q ss_pred cceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhH------------
Q 040646 93 TSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTN------------ 160 (509)
Q Consensus 93 ~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~------------ 160 (509)
..+.++++... ....-..+.+.-......+.+++++|-.+||-+++.++.++..++..+..++..
T Consensus 62 ~ylt~~~~~~~---~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~ 138 (571)
T KOG1237|consen 62 TYLTLELHASG---GGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFK 138 (571)
T ss_pred HHHHHHhccch---HHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCC
Confidence 34555666632 345666777777777888999999998789999999999888888665544322
Q ss_pred -------------HHHHHHHHHHHhhccchhhhhheeeeEeecc---Ccc---cchhhhhhHHHHHHHHHHHHHH-HHHh
Q 040646 161 -------------MWIYSVLRFINGFGRATIGTCAIVLSTELVG---KKR---RGQVGSIGFFCFTLGFLSLPAI-AYIN 220 (509)
Q Consensus 161 -------------~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~~G~~~~~~~-~~~~ 220 (509)
...+..+.-+..+|.|+.-+...++-+|-++ +++ +...+.++....++|..++..+ .+.-
T Consensus 139 ~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq 218 (571)
T KOG1237|consen 139 PGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQ 218 (571)
T ss_pred CCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhh
Confidence 2356667778888999999999999999998 322 2356778888888998888777 5666
Q ss_pred cCCcchHHHHHHHhhHHHHH
Q 040646 221 RGSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 221 ~~~~wr~~f~~~~~~~~~~~ 240 (509)
++.+|.+-|.+..+...+..
T Consensus 219 ~~~~w~lgf~i~~~~~~lai 238 (571)
T KOG1237|consen 219 DNVGWKLGFGIPTVLNALAI 238 (571)
T ss_pred hcccceeeccHHHHHHHHHH
Confidence 78899999888777666543
No 264
>KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only]
Probab=97.66 E-value=0.00058 Score=67.20 Aligned_cols=133 Identities=21% Similarity=0.104 Sum_probs=94.7
Q ss_pred HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhh
Q 040646 349 NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCV 428 (509)
Q Consensus 349 ~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 428 (509)
.++..++.+...|.++||+|||..+........+....+.+.. ++..++ .-...+....++...++.++....+.
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~----~~~~~~-~~l~g~~~~~~s~~~a~vadis~~~~ 145 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG----YWFFLL-LGLSGGFSAIFSVGFAYVADISSEEE 145 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH----HHHhhh-cccccchhhhhhhhhhheeeccchhH
Confidence 3567778889999999999999999888877777766666633 222111 11113334556778899999999999
Q ss_pred hhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHH-hhccCCCCCC
Q 040646 429 RNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGLVIGLCGLFV-IGLPETRDTQ 486 (509)
Q Consensus 429 r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 486 (509)
|....|+.+.....+..++|.+.+ ....+....+.+..+..++..+.. +++||+..++
T Consensus 146 R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~ 206 (463)
T KOG2816|consen 146 RSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEK 206 (463)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcc
Confidence 999999999988888889998887 333455556666666666665554 5677755433
No 265
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=97.60 E-value=0.00095 Score=64.75 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---------HHHHHHHHHHHHhhccchhhhhheeeeEeeccCc---ccchhhhhhHHHH
Q 040646 139 NMLFLSCLMMSVSCLLTIFST---------NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKK---RRGQVGSIGFFCF 206 (509)
Q Consensus 139 ~~l~~~~~~~~i~~~~~~~~~---------~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 206 (509)
|+++++.++..+|.++..++. +.+.+.++-.+.++|.|+.-|...++++|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 567888888999988855542 2367889999999999999999999999999865 4567788899999
Q ss_pred HHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646 207 TLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 207 ~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
++|..++..+ +++-++.+|.+.|.+.++..++..+.
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~ 118 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIV 118 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHH
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHH
Confidence 9999999887 68888999999999988877775443
No 266
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=97.32 E-value=0.01 Score=56.79 Aligned_cols=109 Identities=17% Similarity=0.174 Sum_probs=70.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHhHHHHhh--
Q 040646 344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKI--WTSVEIGLELVAFFSACTAFSLLLIY-- 419 (509)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-- 419 (509)
....+..+..++..+.+.|+.||+|-|....++..+.+++..+=.....+ .+...-.+...+....+..++....+
T Consensus 83 wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPs 162 (480)
T KOG2563|consen 83 WLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPS 162 (480)
T ss_pred HHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhcccc
Confidence 44555667888888999999999999999999999888887665443222 01111122333333344444433322
Q ss_pred --cccccchhhhhhHHHHHHHHHhHhhHH----HHHHHH
Q 040646 420 --TLELFPTCVRNSAISMVRQALVFGGVF----SPVLVA 452 (509)
Q Consensus 420 --~~~~~p~~~r~~~~g~~~~~~~~g~~i----~p~~~~ 452 (509)
..-.+|+++|+++..+..+.+.+|..+ .|++..
T Consensus 163 kiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~ 201 (480)
T KOG2563|consen 163 KIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVP 201 (480)
T ss_pred HHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecC
Confidence 334489999999998888776666554 455554
No 267
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=97.22 E-value=0.035 Score=52.84 Aligned_cols=53 Identities=19% Similarity=0.078 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646 397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV 449 (509)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~ 449 (509)
+.+.+..+.++..+-..+....+.++..|++.+..+-.+.......|-..|..
T Consensus 345 ~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~ 397 (406)
T KOG1479|consen 345 WFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSL 397 (406)
T ss_pred HHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhH
Confidence 33344444445445555667788899998887766655555444444444443
No 268
>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins. Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).
Probab=97.21 E-value=0.0045 Score=61.18 Aligned_cols=149 Identities=17% Similarity=0.130 Sum_probs=89.9
Q ss_pred ccccccCCchHHHHHHHHHhhhhh--HHHHHHHHhhhcC-----chhHHHHHHHHHHHHHHHHHHhccc--hhHHHHHHH
Q 040646 332 PLGLGSLSFNLYLSVTFNALSELP--ASLITFFLIGKLK-----RKSSLLGFTIMSGVCSVLCVVMGKI--WTSVEIGLE 402 (509)
Q Consensus 332 ~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~g~l~dr~g-----r~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 402 (509)
+++.+++|.++.....+.++..++ ..++.|.++|-+. ||..++++.++..++.+.+...+.. .......+.
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l 93 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLL 93 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCchHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHH
Confidence 345567888888877777766664 4578999999873 5556667777666666666665442 222223333
Q ss_pred HHHHHHHHHHhHHHHhhccccc---chhhhhhHHHHHHHHHhHhhHHHHHHHH--hhcccchhHHHHHHHHHHHHHHHHh
Q 040646 403 LVAFFSACTAFSLLLIYTLELF---PTCVRNSAISMVRQALVFGGVFSPVLVA--AGRQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~---p~~~r~~~~g~~~~~~~~g~~i~p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
++..++......+.-++..|.. |.+ ++..++.......+|++++..+.| .........+.+.+.+..+..+..+
T Consensus 94 ~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~ 172 (433)
T PF03092_consen 94 FLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVAL 172 (433)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHH
Confidence 3444444455455556666665 444 777788888888888888877776 2223334445555555544444433
Q ss_pred -hccC
Q 040646 478 -GLPE 481 (509)
Q Consensus 478 -~~~~ 481 (509)
+.+|
T Consensus 173 ~~~~e 177 (433)
T PF03092_consen 173 FLLEE 177 (433)
T ss_pred Hhhhh
Confidence 3444
No 269
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.16 E-value=0.0003 Score=50.18 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=44.8
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLM 147 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~ 147 (509)
+|...++.|+ +..++|.+.++..+...++++++|.++|| +|+++.++....+
T Consensus 23 l~~~~~~~Gl---~~~~iGil~~i~~~~~~~~~pl~g~laDk-~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 23 LPLYLKQLGL---SPSQIGILSAIRPLIRFLAPPLWGFLADK-FGKRKVILLGSLF 74 (77)
T ss_pred hhHhhhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCccHHHHHHHHH
Confidence 5667778888 56699999999999999999999999999 9998877766554
No 270
>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors).
Probab=97.11 E-value=0.0082 Score=62.10 Aligned_cols=140 Identities=14% Similarity=0.101 Sum_probs=83.6
Q ss_pred CCchHHHHHHHHH---hhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccch------hHHHHHHHHHHHH
Q 040646 338 LSFNLYLSVTFNA---LSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIW------TSVEIGLELVAFF 407 (509)
Q Consensus 338 ~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 407 (509)
++.+...+..+.+ ...-+..+++|+++|+ +|+++.+..+.++..++..++.+...+. ....+....+...
T Consensus 18 lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~ 97 (654)
T TIGR00926 18 LGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIAL 97 (654)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHh
Confidence 4555444333322 2333456778888887 6999999998888888877776532111 1111122223334
Q ss_pred HHHHHhHHHHhhcccccchh---hhhhHHHHHHHHHhHhhHHHHHHHHhhc---------ccchhHHHHHHHHHHHHHHH
Q 040646 408 SACTAFSLLLIYTLELFPTC---VRNSAISMVRQALVFGGVFSPVLVAAGR---------QNNFLSYGIFGLVIGLCGLF 475 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~~~~g~~i~p~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 475 (509)
+.++.-+...+...|.++++ .+...+.+.+...++|+++++.+..... ..+...|.+.+++++++.++
T Consensus 98 G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lv 177 (654)
T TIGR00926 98 GTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIV 177 (654)
T ss_pred hccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHH
Confidence 44444556677777777643 3566777788888999988887776322 12444566666666655554
Q ss_pred Hh
Q 040646 476 VI 477 (509)
Q Consensus 476 ~~ 477 (509)
..
T Consensus 178 f~ 179 (654)
T TIGR00926 178 FM 179 (654)
T ss_pred HH
Confidence 43
No 271
>PF12832 MFS_1_like: MFS_1 like family
Probab=97.08 E-value=0.004 Score=44.38 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=47.4
Q ss_pred HHHHHHHhHhhhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHH
Q 040646 318 MVTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIM 379 (509)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~ 379 (509)
++.+.+.+..+=..+.+.++.|.++...+.+.+ +..+++.++.|.++||.++++........
T Consensus 10 f~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 10 FFYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334444555555678888999999888877766 66788999999999999999887765543
No 272
>TIGR00769 AAA ADP/ATP carrier protein family. These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.
Probab=97.08 E-value=0.058 Score=53.35 Aligned_cols=140 Identities=10% Similarity=-0.049 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhHhhhccccccccCCc-----hHHHHHHHHH---h-hhhhHHHHHHHHhhhcCchhHHHHHHHHHHHH
Q 040646 313 RLSAIMVTGFGIGMVYYGMPLGLGSLSF-----NLYLSVTFNA---L-SELPASLITFFLIGKLKRKSSLLGFTIMSGVC 383 (509)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~---~-~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~ 383 (509)
.++...+..++....|+.+-..-+.+.. .+.....+.. + ..++..++-+++++|++|+++...........
T Consensus 8 k~~~~~l~fF~il~~Y~iLR~lKD~lvv~~~~~gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~ 87 (472)
T TIGR00769 8 KFLPLFLMFFCILFNYTILRDTKDTLVVTAKGSGAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGF 87 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhheeecccCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHH
Confidence 3444555556666666665333332222 1122222211 2 22333667789999999999877655555555
Q ss_pred HHHHHHh--ccch---------------------------hHHHHHHHHHHHHHHHHHhH-HHHhhcccccchhhhhhHH
Q 040646 384 SVLCVVM--GKIW---------------------------TSVEIGLELVAFFSACTAFS-LLLIYTLELFPTCVRNSAI 433 (509)
Q Consensus 384 ~~~~~~~--~~~~---------------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~ 433 (509)
..++.+. +... .|....+.+..-.......+ ..|.+++|.+..++..+-.
T Consensus 88 f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy 167 (472)
T TIGR00769 88 FALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFY 167 (472)
T ss_pred HHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 4444432 1100 11111222222222333444 6799999999999999999
Q ss_pred HHHHHHHhHhhHHHHHHHH
Q 040646 434 SMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 434 g~~~~~~~~g~~i~p~~~~ 452 (509)
++....+++|.+++|.+..
T Consensus 168 ~l~~~ganlg~i~sg~~~~ 186 (472)
T TIGR00769 168 ALFGLGANVALIFSGRTIK 186 (472)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766
No 273
>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans. UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].
Probab=97.03 E-value=0.02 Score=47.13 Aligned_cols=103 Identities=10% Similarity=-0.040 Sum_probs=75.0
Q ss_pred HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccc
Q 040646 346 VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFP 425 (509)
Q Consensus 346 ~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 425 (509)
..+.-....+..++.+.+.+++|.|+.++++.+...+....... +..+..+....+.+++.+..+...-.++.+...
T Consensus 43 lai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~~s~ 119 (156)
T PF05978_consen 43 LAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---PNSYTLYPASALLGFGAALLWTAQGTYLTSYST 119 (156)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHhhhhHHhhHhhhHHHHHcCC
Confidence 33334555667788899999999999999998887766555433 223444455566667777888887888888888
Q ss_pred hhhhhhHHHHHHHHHhHhhHHHHHHH
Q 040646 426 TCVRNSAISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 426 ~~~r~~~~g~~~~~~~~g~~i~p~~~ 451 (509)
++.+++..++...+...+.++|.++.
T Consensus 120 ~~~~~~~~~ifw~i~~~s~i~G~~~~ 145 (156)
T PF05978_consen 120 EETIGRNTGIFWAIFQSSLIFGNLFL 145 (156)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 89999988888777777766666554
No 274
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=96.89 E-value=0.056 Score=47.96 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=34.8
Q ss_pred cccchhhhhhHHHHHHHHHHHHHH---H-HH--hcCCcchHHHHHHHhhHHHHHHHhhe
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAI---A-YI--NRGSSWRRIYLYTSIPTILYCILVRF 245 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~---~-~~--~~~~~wr~~f~~~~~~~~~~~~~~~~ 245 (509)
|+|+....+...+.++|.++.-+. . .. .....|++.+.+.+++.++..++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888889997765332 2 11 11235999999988887765544433
No 275
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=96.68 E-value=0.00052 Score=64.43 Aligned_cols=104 Identities=16% Similarity=0.066 Sum_probs=3.0
Q ss_pred HHHHHhhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHH---Hhcc--------chhHHHHHHHHHHHHHHHHHh
Q 040646 346 VTFNALSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCV---VMGK--------IWTSVEIGLELVAFFSACTAF 413 (509)
Q Consensus 346 ~~~~~~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~ 413 (509)
..+..++.++|+.+..+..-+. .+|++. +..+.=.+..-++. ..+. .+.+..+.+.++.++..+...
T Consensus 188 fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 188 FLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 4456688889999887643221 233333 22222222111111 1111 112333333444445555555
Q ss_pred HHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHH
Q 040646 414 SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVL 450 (509)
Q Consensus 414 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~ 450 (509)
+....+.++..+++.|..+-.+......+|-.+|..+
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp HHHH---------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888898888888777666666666665555443
No 276
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=96.50 E-value=0.044 Score=49.62 Aligned_cols=135 Identities=16% Similarity=0.058 Sum_probs=84.6
Q ss_pred chhHHHHHHHHHHHHhhhhhcccc-CCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEe
Q 040646 110 GLPASSFFMGCLAGGLILATLADS-SLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTE 188 (509)
Q Consensus 110 ~~~~s~~~~~~~i~~~~~g~l~dr-~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e 188 (509)
|.+.-+-.+...+..+.+..+.|| +||.|.. +..++.+.+.++.+++++.++-+++-.+..++.|.....-..+-+.
T Consensus 65 g~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~--~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~ 142 (409)
T KOG3880|consen 65 GAVLLADILPSLAIKLTAPFFIHRFPFGFRIA--LVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR 142 (409)
T ss_pred chhhhhhhhHHHHHHHhchhhhhhcccchHHH--HHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc
Confidence 444444555566666667777887 3555543 4556667788888999999999999999888888766665554433
Q ss_pred eccCcccchhhhhhHHHHHHHHHHHHHH-HHHhc--CCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 189 LVGKKRRGQVGSIGFFCFTLGFLSLPAI-AYINR--GSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 189 ~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~~~~--~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
+ + ....+.++.+.+.+.++|..- +.+.+ +.+-|...++...+-++.+...++.+++++
T Consensus 143 Y-~----~~~i~~WSSGTGgAGliGa~SYa~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~pe 203 (409)
T KOG3880|consen 143 Y-P----SIVIAGWSSGTGGAGLIGASSYAFLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSPE 203 (409)
T ss_pred C-C----CceeccccCCCCcchhhhhhHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCCc
Confidence 2 2 223445555555556666554 33333 345677777766665555556656665543
No 277
>KOG3098 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.018 Score=56.24 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=80.2
Q ss_pred cchhHHHHHHHHHHHHhhhhhcccc--CCCchHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHH
Q 040646 109 KGLPASSFFMGCLAGGLILATLADS--SLGRKNMLFLSCLMMSVSCLLTIFS------------------TNMWIYSVLR 168 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr--~~Grr~~l~~~~~~~~i~~~~~~~~------------------~~~~~l~~~r 168 (509)
.++..-...+|..++..+.+.+.+| ++||++.+.++..+..++.++.-.. +++...++.-
T Consensus 281 ~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~ 360 (461)
T KOG3098|consen 281 IAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIG 360 (461)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHH
Confidence 3333334445555555667777766 5999999999999988888876543 2466788888
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI 216 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~ 216 (509)
++.|++-+.........+.+.. +++|..+.++...-..++..++...
T Consensus 361 ~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~ 407 (461)
T KOG3098|consen 361 FLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFF 407 (461)
T ss_pred HHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999 5888888888877777776655444
No 278
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=96.31 E-value=0.027 Score=54.95 Aligned_cols=115 Identities=16% Similarity=0.043 Sum_probs=87.4
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH---H---h----HHHHHHHHHHHHhhc
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF---S---T----NMWIYSVLRFINGFG 174 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~---~---~----~~~~l~~~r~l~G~~ 174 (509)
++.++|..-+...+....+.+...++.+| +|..|.-+++.........++.. . + +...++.+-.+.-+|
T Consensus 291 s~~~igi~R~~gav~Gl~gT~~~p~l~~r-iGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~s~~~l~~gi~~SR~G 369 (432)
T PF06963_consen 291 SPSVIGIFRGLGAVFGLLGTWVYPWLMKR-IGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSISAYLLLGGIALSRIG 369 (432)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Confidence 55588999999999999999999999999 99988877776655443333322 1 2 344555555666666
Q ss_pred cchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646 175 RATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN 220 (509)
Q Consensus 175 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 220 (509)
.=+......-++.|..|+++||...|.-.+..++--++...++.+.
T Consensus 370 LW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~~ii~ 415 (432)
T PF06963_consen 370 LWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVLTIIF 415 (432)
T ss_pred HHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6667778888999999999999999999988888877777665543
No 279
>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX). Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane
Probab=96.21 E-value=0.28 Score=47.30 Aligned_cols=149 Identities=17% Similarity=0.077 Sum_probs=84.9
Q ss_pred ccccccc-CCchHHH----HHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Q 040646 331 MPLGLGS-LSFNLYL----SVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVA 405 (509)
Q Consensus 331 ~~~~~~~-~g~~~~~----~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (509)
.|++.+. .|++... ..-+..-..++..+....+.|.++-|++++...+...+...++.+.. .....-..-+..
T Consensus 27 ~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--sv~~mq~~q~~y 104 (412)
T PF01770_consen 27 TPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--SVLAMQLMQFFY 104 (412)
T ss_pred hHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--cHHHHHHHHHHH
Confidence 3455444 5554322 22233344455667778899999999999998888777777666632 222222222222
Q ss_pred HHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHH----HhhcccchhHHHHHHHHHHHHHHHHhhccC
Q 040646 406 FFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLV----AAGRQNNFLSYGIFGLVIGLCGLFVIGLPE 481 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (509)
+.. ...-...++++-...|+++--++.+.......+|..++.++. ......+.....+......++.+..+++|.
T Consensus 105 g~~-~a~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~ 183 (412)
T PF01770_consen 105 GLA-TAAEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPM 183 (412)
T ss_pred HHH-HHHHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 222 223345567777778888888888887777666655554444 433334433334434444445555566765
Q ss_pred C
Q 040646 482 T 482 (509)
Q Consensus 482 ~ 482 (509)
.
T Consensus 184 ~ 184 (412)
T PF01770_consen 184 P 184 (412)
T ss_pred C
Confidence 3
No 280
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=96.02 E-value=0.043 Score=52.66 Aligned_cols=111 Identities=17% Similarity=0.067 Sum_probs=79.2
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH---HHHHHHHhHHHHHHHHHHHHhhccchhhhhhee
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS---CLLTIFSTNMWIYSVLRFINGFGRATIGTCAIV 184 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 184 (509)
+..+....|.+|-.++.--...+ | +-+-+++.+-..+..+. ....-+.++.|..++.-+..|+..|..++....
T Consensus 282 ~Y~~Y~~~YQ~GVFISRSS~~~~--r-ir~lwils~LQ~~nl~~~~l~s~~~fipsi~ivf~lif~eGLlGGa~YVNtF~ 358 (402)
T PF02487_consen 282 QYRWYQLLYQLGVFISRSSLPFF--R-IRRLWILSLLQVINLVFLLLQSWYRFIPSIWIVFVLIFYEGLLGGASYVNTFY 358 (402)
T ss_pred HHHHHHHHHHHHHhhhhcceeee--e-hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 56777777777766664322221 3 43333322222222222 222334678999999999999999999999999
Q ss_pred eeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc
Q 040646 185 LSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR 221 (509)
Q Consensus 185 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 221 (509)
.+.|-.++++|..+++....+-++|.+++.+++...+
T Consensus 359 ~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 359 RISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999876544
No 281
>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane
Probab=96.01 E-value=0.84 Score=45.58 Aligned_cols=141 Identities=13% Similarity=0.006 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHhHhhhcc-----ccccccCCchHH--HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHH
Q 040646 312 RRLSAIMVTGFGIGMVYYGM-----PLGLGSLSFNLY--LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCS 384 (509)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~ 384 (509)
+.++...+..++..+.+..+ ++..+..|.+.. .-....--+.++..++-.+++++++|.++..+.........
T Consensus 24 ~k~~~l~~m~f~i~f~y~~lR~~KD~lvvt~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF 103 (491)
T PF03219_consen 24 KKFLPLALMFFFILFNYTILRDLKDTLVVTAQGAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFF 103 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCeEEEecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 44555555555555555543 222333333211 11111112344455667889999999998765554444444
Q ss_pred HHHHHh--cc-----ch----------------------hHHHHHHHHHHHHHHHHHhH-HHHhhcccccchhhhhhHHH
Q 040646 385 VLCVVM--GK-----IW----------------------TSVEIGLELVAFFSACTAFS-LLLIYTLELFPTCVRNSAIS 434 (509)
Q Consensus 385 ~~~~~~--~~-----~~----------------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g 434 (509)
.++++. +. ++ .|....+.+..-.......+ ..|.+++|.++.++..+..+
T Consensus 104 ~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYp 183 (491)
T PF03219_consen 104 ALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYP 183 (491)
T ss_pred HHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 443331 11 00 00011111111111122223 46899999999999999999
Q ss_pred HHHHHHhHhhHHHHHHHH
Q 040646 435 MVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 435 ~~~~~~~~g~~i~p~~~~ 452 (509)
+.....++|.++++.+..
T Consensus 184 l~g~ganigli~sG~~~~ 201 (491)
T PF03219_consen 184 LFGLGANIGLIFSGQLTS 201 (491)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887765
No 282
>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]
Probab=95.97 E-value=0.17 Score=46.96 Aligned_cols=109 Identities=18% Similarity=0.148 Sum_probs=68.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccc
Q 040646 344 LSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLEL 423 (509)
Q Consensus 344 ~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (509)
.......+....+.++.|.+.||.|||+.+..+.....++.+...+................+++.+...+....+..|.
T Consensus 43 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 122 (338)
T COG0477 43 LLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSEW 122 (338)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444446666667899999999999977776665434443333343331222222323333445556667788889999
Q ss_pred cch-hhhhhHHHHHHH-HHhHhhHHHHHHHH
Q 040646 424 FPT-CVRNSAISMVRQ-ALVFGGVFSPVLVA 452 (509)
Q Consensus 424 ~p~-~~r~~~~g~~~~-~~~~g~~i~p~~~~ 452 (509)
.|. +.|+...+.... ...+|..++|.+.+
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T COG0477 123 FPEATERGLAVGLVTLGAGALGLALGPLLAG 153 (338)
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887 667888887777 46677777775554
No 283
>PRK03612 spermidine synthase; Provisional
Probab=95.41 E-value=0.13 Score=52.05 Aligned_cols=135 Identities=13% Similarity=0.075 Sum_probs=78.4
Q ss_pred cccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHH--H-HHHHHHH----HHHhHH-HHHHHHHHHHhhccc
Q 040646 105 SSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLM--M-SVSCLLT----IFSTNM-WIYSVLRFINGFGRA 176 (509)
Q Consensus 105 ~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~--~-~i~~~~~----~~~~~~-~~l~~~r~l~G~~~g 176 (509)
+..+.+.+.++++.|.++|+.+++++.++ .-|+ ....-+.+ . +++..+. ++...+ ..++..-++.|+..|
T Consensus 48 s~~~~~~ii~~fl~glalGs~l~~~~~~~-~~~~-~~~~e~~i~l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~G 125 (521)
T PRK03612 48 SVTQFSTVIGLMLFAMGVGALLSKYLLRD-AAAG-FVAVELLLALLGGLSALILYAAFAFQGLSRLLLYVLVLLIGLLIG 125 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44478999999999999999999888744 3333 22221111 1 1111111 111111 223344566788888
Q ss_pred hhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHH-HH-HhcCCcchHHHHHHHhhHHHHHHH
Q 040646 177 TIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAI-AY-INRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 177 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~-~~-~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
+..|....+..+... ++-++..|-......+|.++|.++ ++ +++..|-....++.+.+.++.+++
T Consensus 126 ~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~ 192 (521)
T PRK03612 126 MEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALV 192 (521)
T ss_pred HHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 888887666554322 234566777888888888888888 43 455566554444555555444433
No 284
>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs). Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.
Probab=94.51 E-value=0.0061 Score=61.68 Aligned_cols=152 Identities=14% Similarity=0.104 Sum_probs=1.2
Q ss_pred cccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc----c------c----
Q 040646 331 MPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG----K------I---- 393 (509)
Q Consensus 331 ~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~----~------~---- 393 (509)
++.+-+.++++....+.+.+ ++.++..++..++.+|..|-+.+-.+.++++++.+++.+-. . .
T Consensus 26 lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~ 105 (539)
T PF03137_consen 26 LTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNG 105 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccccccccc
Confidence 45556677887777766655 66677777778888887777788888888888887766521 0 0
Q ss_pred ------------------------------hhHHHHHHH----HHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHH
Q 040646 394 ------------------------------WTSVEIGLE----LVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQA 439 (509)
Q Consensus 394 ------------------------------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~ 439 (509)
.......++ ++.+++....+++..+|+-|..+++..+...|+....
T Consensus 106 ~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~ 185 (539)
T PF03137_consen 106 NSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAM 185 (539)
T ss_dssp ----------------------------------------------SSS-------------------------------
T ss_pred ccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHH
Confidence 000011112 2233444556778889999999999999999998888
Q ss_pred HhHhhHHHHHHHH----h----hc----------------ccchhHHHHHHHHHHHHHHHHhhccCC
Q 040646 440 LVFGGVFSPVLVA----A----GR----------------QNNFLSYGIFGLVIGLCGLFVIGLPET 482 (509)
Q Consensus 440 ~~~g~~i~p~~~~----~----~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (509)
..+|..+|=++.+ . .. ..++..|++.+.+.++.++.++.+|+.
T Consensus 186 ~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 186 SILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp -------------------------------------------------------------------
T ss_pred hhccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 7777665533332 0 00 112334566666666666666666653
No 285
>KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism]
Probab=94.11 E-value=0.12 Score=49.87 Aligned_cols=134 Identities=16% Similarity=0.056 Sum_probs=80.0
Q ss_pred HHHHHHhHhhhccccccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhh----cCchhHHHH-HHHHHHHHHHHHHHh
Q 040646 319 VTGFGIGMVYYGMPLGLGSLSFNLYLSVTFNA---LSELPASLITFFLIGK----LKRKSSLLG-FTIMSGVCSVLCVVM 390 (509)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr----~gr~~~~~~-~~~~~~~~~~~~~~~ 390 (509)
...++...-..+.+.+++++|.+-.....+.. +.+++..++.|..+|| +|||+..+. +.....++++++.+.
T Consensus 43 Gvqf~wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a 122 (498)
T KOG0637|consen 43 GVQFGWALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA 122 (498)
T ss_pred HHHHHHHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH
Confidence 33444444455566677777877555544433 5566777888999996 688776654 444444555544442
Q ss_pred c--------cch---hHHHHHHHHHHH----HHHHHHhHHHHhhcccccchhhhhh-HHHHHHHHHhHhhHHHHHHHH
Q 040646 391 G--------KIW---TSVEIGLELVAF----FSACTAFSLLLIYTLELFPTCVRNS-AISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 391 ~--------~~~---~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~r~~-~~g~~~~~~~~g~~i~p~~~~ 452 (509)
. ... ....+.+.+++. +.........-++..|+..++.+.+ +.+....+..+|+.++=.+..
T Consensus 123 aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~ 200 (498)
T KOG0637|consen 123 ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGS 200 (498)
T ss_pred hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccc
Confidence 1 111 112233333332 3333455667788899887776666 888888888888876544443
No 286
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=93.56 E-value=6.3 Score=36.68 Aligned_cols=72 Identities=11% Similarity=0.120 Sum_probs=54.7
Q ss_pred HHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeecc
Q 040646 118 MGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVG 191 (509)
Q Consensus 118 ~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 191 (509)
+..+.++.+.+.+..+ +|-|.++.++...+... +..-+-+.|..++-.-...|++.+..+..--+|+++...
T Consensus 69 ~~l~~s~m~~~~~Ir~-~g~K~tm~lav~~Y~ly-iA~Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRF-LGTKWTMVLAVFPYALY-IAANLEPRYETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred HHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHH-HHhhcchhHHhhccHHHhhccccccccccCcceecHHHH
Confidence 3344455555577888 99999999888776543 222234678899999999999999999999999988764
No 287
>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters. Note that many members are hypothetical proteins.
Probab=93.20 E-value=0.47 Score=34.31 Aligned_cols=63 Identities=14% Similarity=0.067 Sum_probs=49.3
Q ss_pred ccccccccCCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhcc
Q 040646 330 GMPLGLGSLSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGK 392 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~ 392 (509)
.+|.+.++.+++......+ ..++.++|.+...++.++.++++.+..+.+...+....+.+...
T Consensus 14 lLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~ 79 (85)
T PF06779_consen 14 LLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHS 79 (85)
T ss_pred HhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3588888888887666544 34888899999999988888888888888888888887777443
No 288
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=93.00 E-value=2.6 Score=39.85 Aligned_cols=36 Identities=8% Similarity=-0.007 Sum_probs=27.5
Q ss_pred HHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646 414 SLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV 449 (509)
Q Consensus 414 ~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~ 449 (509)
....-...|..|.+.|..+.|+.|.....-..+--+
T Consensus 405 lAVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~i 440 (503)
T KOG2601|consen 405 LAVTQIMQETVPESERCVVFGVQNSLNSALDLLKDI 440 (503)
T ss_pred HHHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHHh
Confidence 345667889999999999999998887665544333
No 289
>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters. The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.
Probab=92.68 E-value=0.81 Score=44.36 Aligned_cols=107 Identities=19% Similarity=0.179 Sum_probs=65.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh--ccch------hHHHHHHHHHHHHHHHHHhHHHHhhcccccchh---hhhhHHHHHHHH
Q 040646 371 SSLLGFTIMSGVCSVLCVVM--GKIW------TSVEIGLELVAFFSACTAFSLLLIYTLELFPTC---VRNSAISMVRQA 439 (509)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~g~~~~~ 439 (509)
+++.++.++..++.+++.+. +... ....+.+. +..++.++.=+...++..|.++++ .|...+...+..
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~-lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~ 80 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLA-LIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWG 80 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHH-HHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHH-HHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHH
Confidence 45667777777777774442 2221 12333333 334556666677888888888765 455667777888
Q ss_pred HhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHHhh
Q 040646 440 LVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFVIG 478 (509)
Q Consensus 440 ~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 478 (509)
.++|..+++.+..... .++...|.+.++..+++.+..+.
T Consensus 81 in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 81 INIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 8999999888777433 45555666666666665554443
No 290
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=92.59 E-value=3.3 Score=40.98 Aligned_cols=110 Identities=13% Similarity=0.158 Sum_probs=74.8
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCch--HHHHH--HHHHHHHHHHHHHH---------HhHHHHHHHHHHHHhhcc
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRK--NMLFL--SCLMMSVSCLLTIF---------STNMWIYSVLRFINGFGR 175 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr--~~l~~--~~~~~~i~~~~~~~---------~~~~~~l~~~r~l~G~~~ 175 (509)
.-.....|.+|-.+|..+..+.. . -++| .+.+. .=+++.-..++|.. -++-+..++.-++.|+..
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~-~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFM-W-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeE-e-eCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 34556666777677666444321 1 1222 33322 22233333334432 245667777899999999
Q ss_pred chhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646 176 ATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN 220 (509)
Q Consensus 176 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 220 (509)
|-.....+.+..+..++++|..+..+...+..+|..+|..++++.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~ 431 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLF 431 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998887553
No 291
>COG3202 ATP/ADP translocase [Energy production and conversion]
Probab=92.58 E-value=10 Score=37.51 Aligned_cols=101 Identities=11% Similarity=-0.045 Sum_probs=63.9
Q ss_pred hhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh--cc-----c-----------hh------------HHHHHH
Q 040646 352 SELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM--GK-----I-----------WT------------SVEIGL 401 (509)
Q Consensus 352 ~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~--~~-----~-----------~~------------~~~~~~ 401 (509)
+.++..++-.++.+++.+.++..........+.+++++. +. + .+ |....+
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 445566777888899998888766555555544444432 10 0 00 222222
Q ss_pred HHHHHHHHHHHhH-HHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 402 ELVAFFSACTAFS-LLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 402 ~~~~~~~~~~~~~-~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.+..=.......+ ..|..++|....++..+-.++.+...+++..+++.+..
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~ 205 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTS 205 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 2222222223333 56889999999999999999999999999888877765
No 292
>KOG2881 consensus Predicted membrane protein [Function unknown]
Probab=92.51 E-value=2.6 Score=37.21 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=20.5
Q ss_pred hHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHH
Q 040646 355 PASLITFFLIGKLKRKSSLLGFTIMSGVCSVLC 387 (509)
Q Consensus 355 ~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~ 387 (509)
+..+-+-+++.|+..|++.+.+.++..+..+..
T Consensus 255 lAVigGk~lAskIS~rtVt~~ggi~Fi~Fgl~~ 287 (294)
T KOG2881|consen 255 LAVIGGKYLASKISVRTVTLIGGILFIIFGLVY 287 (294)
T ss_pred HHHhhhHHHhhhheeEEEEEecchhHHHHHHHH
Confidence 333444567888888887776666655554433
No 293
>PRK03612 spermidine synthase; Provisional
Probab=92.12 E-value=7.4 Score=39.58 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=24.6
Q ss_pred HHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 407 FSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
+..++..|...-+..+... +.-+...|-.+....+|+++|+++.+
T Consensus 122 ~l~G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~ 166 (521)
T PRK03612 122 LLIGMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFP 166 (521)
T ss_pred HHHHHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHH
Confidence 4445555554444433222 12345566666777777777777666
No 294
>KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism]
Probab=91.86 E-value=0.45 Score=49.21 Aligned_cols=153 Identities=12% Similarity=0.047 Sum_probs=96.1
Q ss_pred ccccCCchHHHHHHHHH---hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc-------------------
Q 040646 334 GLGSLSFNLYLSVTFNA---LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG------------------- 391 (509)
Q Consensus 334 ~~~~~g~~~~~~~~~~~---~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~------------------- 391 (509)
.-+.++.+....+.+.+ ++..+...+..+..-|..|-+.+-++.++++++.++..+..
T Consensus 123 iErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~ 202 (735)
T KOG3626|consen 123 IERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVEN 202 (735)
T ss_pred hhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccC
Confidence 33445555444444333 66666677777787888888888888888888877766520
Q ss_pred c---------------------------chhHHHHHHHH----HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHH
Q 040646 392 K---------------------------IWTSVEIGLEL----VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQAL 440 (509)
Q Consensus 392 ~---------------------------~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~ 440 (509)
. ........+++ +.+++....++...+|+-|...++......|+...+.
T Consensus 203 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~ 282 (735)
T KOG3626|consen 203 PSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMA 282 (735)
T ss_pred CccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHH
Confidence 0 00011122222 2233334456677889999999998899999999888
Q ss_pred hHhhHHHHHHHH----hhc-----------------ccchhHHHHHHHHHHHHHHHHhhccCCCCCC
Q 040646 441 VFGGVFSPVLVA----AGR-----------------QNNFLSYGIFGLVIGLCGLFVIGLPETRDTQ 486 (509)
Q Consensus 441 ~~g~~i~p~~~~----~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (509)
.+|.++|=++.+ ... ..++..|++.+.+.++.++.++++|+..++.
T Consensus 283 ~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 283 ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 777776655544 110 0123457777888888888888888765543
No 295
>KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism]
Probab=90.24 E-value=1 Score=43.15 Aligned_cols=127 Identities=13% Similarity=0.125 Sum_probs=88.1
Q ss_pred CCcceeeeeccccc-cccccchhHHH-HHHHHHHHHhhhhhccccCCCchHHHHHHHH--HHHHHHHHH------HHHhH
Q 040646 91 AHTSIISEWDLECA-SSLIKGLPASS-FFMGCLAGGLILATLADSSLGRKNMLFLSCL--MMSVSCLLT------IFSTN 160 (509)
Q Consensus 91 ~~~~i~~~~~~~~~-~~~~~~~~~s~-~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~--~~~i~~~~~------~~~~~ 160 (509)
..|.+..|-.-+.. +++..-.+..+ |.+.-.+|.+...++-++ +||...+..++ ++.-...+| .+-.+
T Consensus 265 iFPg~~~~~~~~~~~~~~y~~~~~~l~fN~~d~vG~~~a~~~~~~--~~r~l~i~v~lR~lfiPlF~~cn~~~~~v~~~~ 342 (406)
T KOG1479|consen 265 IFPGFCSEVKSSGLLGDWYALLLVFLSFNVFDLIGSILAALLTWP--DPRKLTIPVLLRLLFIPLFLLCNYPPLPVVFES 342 (406)
T ss_pred ecchhhcccccCcccchhhHHHHHHHHhHHHHHhhhhhhhcccCC--CCceehHHHHHHHHHHHHHHHhccCCCCceecC
Confidence 45666655543332 24445556666 888888887777777665 44544333222 111111211 22346
Q ss_pred HHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHH
Q 040646 161 MWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYI 219 (509)
Q Consensus 161 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~ 219 (509)
-+++++.-.+.|+..|=.....+.+..+-.+++++..+..+.......|...|..++++
T Consensus 343 ~~~~~~l~~~lglsnGYltsl~m~~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G~~~s~l 401 (406)
T KOG1479|consen 343 DGWFIFLMSLLGLSNGYLTSLIMMYAPKQVKPSEKEAAGNLMVFFLVGGLALGSLLSWV 401 (406)
T ss_pred chHHHHHHHHHHhccchHhhheehhcCCCCChHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 67888999999999999999999999999999999999889888899999999888765
No 296
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=89.75 E-value=3.1 Score=37.26 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=62.1
Q ss_pred cchhHHHHHHHHHHHHhhhhhccccCCCchHHHH----HHHHHHHHHHHHHHH-H----hHHHHHHHHHHHHhhccchhh
Q 040646 109 KGLPASSFFMGCLAGGLILATLADSSLGRKNMLF----LSCLMMSVSCLLTIF-S----TNMWIYSVLRFINGFGRATIG 179 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~----~~~~~~~i~~~~~~~-~----~~~~~l~~~r~l~G~~~g~~~ 179 (509)
.....-++..|+.+|.+..|.+...++.||+.+. .+++++.++.+.... . .++..+++.-++.|+..=+..
T Consensus 143 ~~~~~I~fv~g~~~G~~~ig~~nkt~~kRk~fi~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ 222 (267)
T PF07672_consen 143 IPIFQILFVAGYFLGPFTIGLWNKTNYKRKPFIHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQ 222 (267)
T ss_pred hHHHHHHHHHHHhhhceeeccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 4556667777888888888888876577777665 345555555554212 1 136677888888887743333
Q ss_pred hhheeeeEeeccCcccchhhhhhHHHHHHHHHHHH
Q 040646 180 TCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLP 214 (509)
Q Consensus 180 ~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~ 214 (509)
++ .-.+..-+++..+.+..-.++..+++|.++-.
T Consensus 223 ~V-iL~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yT 256 (267)
T PF07672_consen 223 GV-ILNLPHEYKGYNPKKIGIQFGLIWGFGYIFYT 256 (267)
T ss_pred HH-HhcChhhhcCCCcceehhHHHHHHHHHHHHHH
Confidence 33 33344444444444444455566777765433
No 297
>KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism]
Probab=88.51 E-value=13 Score=35.55 Aligned_cols=59 Identities=15% Similarity=0.214 Sum_probs=31.3
Q ss_pred ccccccccCCchHHHHHHHHHhhhhhH--HHHHHHHhh-----hcCchhHHH-HHHHHHHHHHHHHHH
Q 040646 330 GMPLGLGSLSFNLYLSVTFNALSELPA--SLITFFLIG-----KLKRKSSLL-GFTIMSGVCSVLCVV 389 (509)
Q Consensus 330 ~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~g~l~d-----r~gr~~~~~-~~~~~~~~~~~~~~~ 389 (509)
.+|++++.-+.+-.... +.++..-+- -+++..+.| |+||||..+ -+..+.+..+..+..
T Consensus 52 ~iP~lL~ak~vSyt~~a-~fS~ay~P~sLKllWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~ 118 (510)
T KOG3574|consen 52 AIPLLLQAKGVSYTSQA-IFSFAYWPFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSY 118 (510)
T ss_pred hhHHHhcCCCcchhhhh-hhhhhhhHHHHHHHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhh
Confidence 67888886666533222 222222222 345566666 999998654 344444444444443
No 298
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.30 E-value=4.9 Score=30.05 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=31.7
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS 151 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~ 151 (509)
+.+.-.++=+++..+.....|++.||.+|.+|+.++..++.+.+
T Consensus 43 ~~a~klssefIsGilVGa~iG~llD~~agTsPwglIv~lllGf~ 86 (116)
T COG5336 43 AQAFKLSSEFISGILVGAGIGWLLDKFAGTSPWGLIVFLLLGFG 86 (116)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 44556666777777777888999999667788776666555444
No 299
>KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only]
Probab=77.70 E-value=4.3 Score=37.35 Aligned_cols=75 Identities=12% Similarity=0.045 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhc
Q 040646 147 MMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINR 221 (509)
Q Consensus 147 ~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~ 221 (509)
++.+......+.+++|..++.-+..|+-.|..++...--+.+-.++++|-.+++....+-++|..++.+++.-+.
T Consensus 328 ~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~e~~pd~rEfamsavs~sDS~Gi~lA~~lalplh 402 (409)
T KOG3880|consen 328 LFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHKETEPDVREFAMSAVSISDSIGIFLAGLLALPLH 402 (409)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhhcCCchHHHHhHhhheecchhhHHHHHHHhccch
Confidence 334444455567889988899999999888888888777888788899999999999999999999888865443
No 300
>KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=76.97 E-value=33 Score=31.19 Aligned_cols=132 Identities=8% Similarity=0.019 Sum_probs=82.4
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCc--hHHHHHHHHHHHHHHHHHHHH----h---HHHHHHHHHHHHhhccchh
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGR--KNMLFLSCLMMSVSCLLTIFS----T---NMWIYSVLRFINGFGRATI 178 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Gr--r~~l~~~~~~~~i~~~~~~~~----~---~~~~l~~~r~l~G~~~g~~ 178 (509)
--|.+.+.++++..+|+-+..++..| -.. .+.+.+..++.++...+.... | +...=+++..+.-.+.|..
T Consensus 283 PhGfiFatFMlASmLGSSla~Rl~s~-s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~kes~~~s~i~F~~~E~cvGlf 361 (454)
T KOG4332|consen 283 PHGFIFATFMLASMLGSSLASRLLSR-SSPKVESYMQIVFLVSIAALLLPILTSSVSPSKESPSESLIGFCLFEACVGLF 361 (454)
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHhc-CCcccchHHHHHHHHHHHHHHHHHHHhccCCCcCCchHHHHHHHHHHHHHhhc
Confidence 35899999999999999999888887 333 355555555555444443332 1 1222244555556677888
Q ss_pred hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHH
Q 040646 179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYC 240 (509)
Q Consensus 179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~ 240 (509)
+|..+.+=+++.|++.|...+.++..-.++=..++-..- .-....+-|..|-++.....+..
T Consensus 362 wPSimkmRsqyIPEearstimNfFRvPLnifvClvLynlh~~~~p~~tr~mf~icS~~~~~a~ 424 (454)
T KOG4332|consen 362 WPSIMKMRSQYIPEEARSTIMNFFRVPLNIFVCLVLYNLHVDAFPTTTRNMFGICSAFLFVAS 424 (454)
T ss_pred chHHHHHHHhhCCHHHHhhhhhheechhhHhhhhhheecccccCccccchhhhhhHHHHHHHH
Confidence 999999999999999999888876554333222111100 00112355777777766655543
No 301
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=72.98 E-value=11 Score=28.25 Aligned_cols=36 Identities=14% Similarity=-0.002 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH
Q 040646 116 FFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS 151 (509)
Q Consensus 116 ~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~ 151 (509)
..+...+...+.|...|++||-++.+.+.+++.+++
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~ 86 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVV 86 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 334444556677888888799877666655555444
No 302
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=72.36 E-value=12 Score=24.38 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHH
Q 040646 114 SSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSC 152 (509)
Q Consensus 114 s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~ 152 (509)
........+.....|+..|+++|.++...+..++.++..
T Consensus 7 g~~~~~~i~~g~~~G~~lD~~~~t~p~~~~~g~llG~~~ 45 (55)
T PF09527_consen 7 GFTMAAPILVGFFLGYWLDKWFGTSPWFTLIGLLLGIAA 45 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 344555666677889999987998777666555544443
No 303
>PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs. Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A.
Probab=71.73 E-value=1.2 Score=41.81 Aligned_cols=110 Identities=16% Similarity=0.247 Sum_probs=3.9
Q ss_pred hhHHHHHHHHHHHHhhhhhccccCCCchHHHHHH--HHHHHHHHHHH----------HHHhHHHHHHHHHHHHhhccchh
Q 040646 111 LPASSFFMGCLAGGLILATLADSSLGRKNMLFLS--CLMMSVSCLLT----------IFSTNMWIYSVLRFINGFGRATI 178 (509)
Q Consensus 111 ~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~--~~~~~i~~~~~----------~~~~~~~~l~~~r~l~G~~~g~~ 178 (509)
.+...|.++-.+|..+.++.-=+.-.+|+....+ =+++.-..++| .+.+|-+..++.-++.|+..|-.
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl 265 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYL 265 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchh
Confidence 3456777888888777665321101244443321 12222222223 12345577788899999999999
Q ss_pred hhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh
Q 040646 179 GTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN 220 (509)
Q Consensus 179 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 220 (509)
....+.+..+..++++|..+..+...+..+|..+|..++++.
T Consensus 266 ~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls~~~ 307 (309)
T PF01733_consen 266 STLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLSFLL 307 (309)
T ss_dssp -HHHH-------------------------------------
T ss_pred hhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999988887653
No 304
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=63.76 E-value=34 Score=32.32 Aligned_cols=107 Identities=15% Similarity=0.098 Sum_probs=65.7
Q ss_pred ccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHH----HHH-HHHH----hHHHHHHHHHHHHhhccc
Q 040646 106 SLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVS----CLL-TIFS----TNMWIYSVLRFINGFGRA 176 (509)
Q Consensus 106 ~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~----~~~-~~~~----~~~~~l~~~r~l~G~~~g 176 (509)
-.|.+.+.+.|..++.+|+...-++.|. --.-+.+..-+++..++ .++ ..|+ ++-+.+.+.-++.|.-.|
T Consensus 42 Ilq~S~Iia~yl~amGlGs~~sry~~dd-~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~~~~~~Vly~lt~vIG~LVG 120 (508)
T COG4262 42 ILQTSLIIAGYLAAMGLGSLLSRYVLDD-AALARFVDVELLLGLIGGVSAAALYLLFALESAPSRLVLYALTAVIGVLVG 120 (508)
T ss_pred eeehHHHHHHHHHHhchhhhhhccccCc-hHHHHHHHHHHHHHHhccchHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 3478999999999999999999998887 33332222222222111 111 1233 456788888899999999
Q ss_pred hhhhhheeeeEeec-cCcccchhhhhhHHHHHHHHHHHHHH
Q 040646 177 TIGTCAIVLSTELV-GKKRRGQVGSIGFFCFTLGFLSLPAI 216 (509)
Q Consensus 177 ~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~~~~~ 216 (509)
...|..+.++.... ..+. ..+.....-.+|.+.+.++
T Consensus 121 ~EiPL~mrml~~r~a~~k~---~~s~vl~~DYLGal~~gLl 158 (508)
T COG4262 121 AEIPLLMRMLQRRQAKAKD---LGSRVLTLDYLGALAGGLL 158 (508)
T ss_pred cchHHHHHHHHHHHHHHHh---hhhhhhhhHhhhhhhHHHH
Confidence 99999988876622 1111 1122222245666666655
No 305
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=62.61 E-value=48 Score=27.15 Aligned_cols=36 Identities=6% Similarity=-0.020 Sum_probs=27.3
Q ss_pred HHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHH
Q 040646 411 TAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVF 446 (509)
Q Consensus 411 ~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i 446 (509)
+..++.|..++...+++..|...|+-.+-.+++.+.
T Consensus 110 gllGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 110 GLLGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HHHhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 344677788888888888899999888777766543
No 306
>KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism]
Probab=60.00 E-value=12 Score=35.32 Aligned_cols=96 Identities=13% Similarity=0.006 Sum_probs=72.3
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHH--HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheee
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNM--LFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVL 185 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~--l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~ 185 (509)
.-|..-++..+..+++++..|++--+ +.|..- +.++....+...++++.++++|...++.++.+.-.....+++..-
T Consensus 272 yNG~veAv~tlLGa~~~~~~g~l~i~-w~r~g~~ll~~~s~~~agllf~m~~t~~Iw~~Ya~yvlfr~~y~l~itiA~~~ 350 (433)
T KOG3810|consen 272 YNGAVEAVSTLLGAIAALAAGYLNIN-WNRWGDLLLAVGSAVQAGLLFIMAQTQHIWVCYAGYVLFRVIYQLTITIATFQ 350 (433)
T ss_pred hcCHHHHHHHHHHHHHHHHHHheeec-cchhhHHHHHHHHHHhhhhhhhhhcccceehhhhhHHHHHhhHhhhhhHHHHH
Confidence 45777888888899999999999888 777533 444455555555666777888888888888777777777777777
Q ss_pred eEeeccCcccchhhhhhHH
Q 040646 186 STELVGKKRRGQVGSIGFF 204 (509)
Q Consensus 186 i~e~~~~~~r~~~~~~~~~ 204 (509)
+++....+.-|..+|+...
T Consensus 351 iA~nL~~e~~gLvFGiNTF 369 (433)
T KOG3810|consen 351 IARNLSSELFGLVFGINTF 369 (433)
T ss_pred HHHhhhhhhheeeeehHHH
Confidence 7777777777888877644
No 307
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.94 E-value=46 Score=25.11 Aligned_cols=27 Identities=15% Similarity=-0.019 Sum_probs=15.2
Q ss_pred hhhhhHHHHHHHHhhhc-CchhHHHHHH
Q 040646 351 LSELPASLITFFLIGKL-KRKSSLLGFT 377 (509)
Q Consensus 351 ~~~~~~~~~~g~l~dr~-gr~~~~~~~~ 377 (509)
+.+++.....||+.||+ |.+++-++.+
T Consensus 53 IsGilVGa~iG~llD~~agTsPwglIv~ 80 (116)
T COG5336 53 ISGILVGAGIGWLLDKFAGTSPWGLIVF 80 (116)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 33444455668888886 4555444333
No 308
>KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism]
Probab=51.79 E-value=1.1e+02 Score=29.57 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=18.1
Q ss_pred HhhhhhHHHHHHHHhhhcCchhHHHHHH
Q 040646 350 ALSELPASLITFFLIGKLKRKSSLLGFT 377 (509)
Q Consensus 350 ~~~~~~~~~~~g~l~dr~gr~~~~~~~~ 377 (509)
+...++-..+.|...|+..|+|.+....
T Consensus 73 sgs~lvlg~ivGq~vDg~sr~Kvi~~~L 100 (503)
T KOG2601|consen 73 SGSQLVLGPIVGQWVDGMSRVKVIQTWL 100 (503)
T ss_pred HhHHHhhHHHHHHHhcchhHHHHHHHHH
Confidence 3344445556677779999998765433
No 309
>PF06912 DUF1275: Protein of unknown function (DUF1275); InterPro: IPR010699 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown although a few members are thought to be membrane proteins.
Probab=50.76 E-value=1.5e+02 Score=25.87 Aligned_cols=39 Identities=10% Similarity=0.179 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhhc---cccCCCchHHHHHHHHHHHHHHH
Q 040646 114 SSFFMGCLAGGLILATL---ADSSLGRKNMLFLSCLMMSVSCL 153 (509)
Q Consensus 114 s~~~~~~~i~~~~~g~l---~dr~~Grr~~l~~~~~~~~i~~~ 153 (509)
....++..+|..+.+.+ .++ ..+|+.....+.+..+..+
T Consensus 53 ~~~i~~F~~G~~~~~~i~~~~~~-~~~~~~~~~~l~~~~~ll~ 94 (209)
T PF06912_consen 53 LLAILSFILGAFLAGLIVRRSRR-RRRRRWYRILLLLEAILLL 94 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHH
Confidence 34444555555555555 223 4444444444444333333
No 310
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=48.12 E-value=1.3e+02 Score=29.22 Aligned_cols=18 Identities=11% Similarity=0.324 Sum_probs=10.3
Q ss_pred hhhhhHHHHHHHHhhhcC
Q 040646 351 LSELPASLITFFLIGKLK 368 (509)
Q Consensus 351 ~~~~~~~~~~g~l~dr~g 368 (509)
+..++..++.|++..|.+
T Consensus 6 i~~i~~ii~~G~~~~~~~ 23 (385)
T PF03547_consen 6 ILPIFLIILLGYLLGRFG 23 (385)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344455556667766653
No 311
>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]. This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane
Probab=47.41 E-value=1.6e+02 Score=29.64 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=15.9
Q ss_pred HHHhhhcCchhHHHH-HHHHHHHHHHHHH
Q 040646 361 FFLIGKLKRKSSLLG-FTIMSGVCSVLCV 388 (509)
Q Consensus 361 g~l~dr~gr~~~~~~-~~~~~~~~~~~~~ 388 (509)
...++|+||||..++ ...+.++.++.+.
T Consensus 61 s~y~~~~GRRKSWiiP~Q~l~g~~m~~l~ 89 (544)
T PF13000_consen 61 SVYSKRIGRRKSWIIPIQYLSGILMLYLS 89 (544)
T ss_pred hhcccccCCcchhhhHHHHHHHHHHHHHH
Confidence 445668999987553 3444444444433
No 312
>COG1422 Predicted membrane protein [Function unknown]
Probab=45.55 E-value=1e+02 Score=26.38 Aligned_cols=16 Identities=19% Similarity=0.027 Sum_probs=7.6
Q ss_pred CcchHHHHHHHhhHHH
Q 040646 223 SSWRRIYLYTSIPTIL 238 (509)
Q Consensus 223 ~~wr~~f~~~~~~~~~ 238 (509)
.+..+..++.+++..+
T Consensus 44 ~~p~lvilV~avi~gl 59 (201)
T COG1422 44 LPPHLVILVAAVITGL 59 (201)
T ss_pred cccHHHHHHHHHHHHH
Confidence 3445555555544443
No 313
>KOG4830 consensus Predicted sugar transporter [Carbohydrate transport and metabolism]
Probab=44.33 E-value=2.5e+02 Score=25.61 Aligned_cols=31 Identities=10% Similarity=0.045 Sum_probs=21.1
Q ss_pred cchhHHHHHHHHHHHHhhhhhcc---------ccCCCchHH
Q 040646 109 KGLPASSFFMGCLAGGLILATLA---------DSSLGRKNM 140 (509)
Q Consensus 109 ~~~~~s~~~~~~~i~~~~~g~l~---------dr~~Grr~~ 140 (509)
...++-+..+.-++..++.|... || +|||+.
T Consensus 54 ~AmlML~GQVtda~st~ftGi~~d~nll~~~idr-~G~~~~ 93 (412)
T KOG4830|consen 54 RAMLMLIGQVTDAISTPFTGIFSDSNLLPACIDR-IGRRMS 93 (412)
T ss_pred hHHHHHhhHHHHHHhcccccccccccccHHHhhh-hcceee
Confidence 34666677777778888777554 45 887764
No 314
>COG4769 Predicted membrane protein [Function unknown]
Probab=41.23 E-value=34 Score=28.11 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646 115 SFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG 174 (509)
Q Consensus 115 ~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 174 (509)
++.+..++.+...-++..+ +|+|..-.+|... ..++.+|..++.+.+++.|-.
T Consensus 81 l~sfaG~i~S~L~m~~l~~-f~~k~~S~lgiS~------mGaF~hNl~QLivas~Lv~~~ 133 (181)
T COG4769 81 LYSFAGAILSTLFMYFLYQ-FGPKYLSLLGISV------MGAFTHNLGQLIVASFLVFTT 133 (181)
T ss_pred HHHHHHHHHHHHHHHHHHH-cCCceEeeeehhh------HHHHHHhHHHHHHHHHHHhcc
Confidence 3445555666667778888 9988875555433 346779999999999987643
No 315
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=40.65 E-value=3.6e+02 Score=26.44 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=10.9
Q ss_pred HHhhhhhccccCCCchHHHHHHH
Q 040646 123 GGLILATLADSSLGRKNMLFLSC 145 (509)
Q Consensus 123 ~~~~~g~l~dr~~Grr~~l~~~~ 145 (509)
..++.|-+++| ...+..++.+.
T Consensus 114 ~~IvsGavaeR-~~~~~~~v~~~ 135 (404)
T TIGR03644 114 MSIVSGAVAER-MKLWPFLLFAV 135 (404)
T ss_pred HHHHHhHhhhc-ccHHHHHHHHH
Confidence 33455566665 54444444443
No 316
>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes. Members are quite diverse in sequence. Their function is unknown.
Probab=39.03 E-value=1.8e+02 Score=22.51 Aligned_cols=37 Identities=11% Similarity=0.015 Sum_probs=20.2
Q ss_pred chHHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHH
Q 040646 340 FNLYLSVTFNALSELPASLITFFLIGKLKRKSSLLGF 376 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~ 376 (509)
.+.........+..+++.+++|+++-|..++|-+..+
T Consensus 34 ~~e~~~~~~~~~i~~ls~~~GG~~a~~~~~~kG~l~G 70 (116)
T PF12670_consen 34 LSESILPWLVVIIYILSVFIGGFYAGRKAGSKGWLHG 70 (116)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 3334444445566667777777776554444433333
No 317
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=38.21 E-value=1.7e+02 Score=21.99 Aligned_cols=32 Identities=16% Similarity=0.133 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 040646 351 LSELPASLITFFLIGKLKRKSSLLGFTIMSGV 382 (509)
Q Consensus 351 ~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~ 382 (509)
+..++|.+++-|+-++++-.+...+.+++.++
T Consensus 54 ~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv 85 (100)
T TIGR02230 54 IPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGV 85 (100)
T ss_pred HHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Confidence 33445555566666667765544444443333
No 318
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=37.09 E-value=4.2e+02 Score=26.05 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=9.7
Q ss_pred HHHHHHHHHhHhhHHHHHHH
Q 040646 432 AISMVRQALVFGGVFSPVLV 451 (509)
Q Consensus 432 ~~g~~~~~~~~g~~i~p~~~ 451 (509)
+..+-...+.+|.+..+++.
T Consensus 312 ~~~vHg~~Gi~G~i~~glfa 331 (403)
T TIGR00836 312 AFAVHGVGGIWGLIATGLFA 331 (403)
T ss_pred cchhhhhhHHHHHHHHHHhc
Confidence 34444444455555555544
No 319
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=34.98 E-value=1.6e+02 Score=27.16 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHhhccchhh
Q 040646 142 FLSCLMMSVSCLLTIFS-TNMWIYSVLRFINGFGRATIG 179 (509)
Q Consensus 142 ~~~~~~~~i~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~ 179 (509)
+.+++++++++++..+. ++.|.+.+.-++.+++.++..
T Consensus 3 ~~~~~~~~~~s~~~~l~~~~~~l~~~~~~~~~F~~~ml~ 41 (284)
T PF12805_consen 3 IATLLCFALASLLVGLLFPYPWLLILVLALLTFFFGMLG 41 (284)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence 44555555555555544 445555566666666655543
No 320
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=34.39 E-value=3.9e+02 Score=24.95 Aligned_cols=95 Identities=11% Similarity=-0.039 Sum_probs=50.5
Q ss_pred hhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHH
Q 040646 354 LPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAI 433 (509)
Q Consensus 354 ~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~ 433 (509)
+.-.-+++.+++|-|.-++-+=+..+..............+++.-+... ...+..++....+.......++--++.
T Consensus 21 LllaaLG~l~sERsGVlNIglEG~M~~gAf~~~~~~~~t~spw~gl~~a----~l~g~l~~ll~a~~ti~l~~nqiisG~ 96 (304)
T COG1079 21 LLLAALGGLFSERSGVLNIGLEGIMLLGAFSGALFAYGTGSPWLGLLAA----ALVGALFGLLHAFLTIKLRANQIISGL 96 (304)
T ss_pred HHHHHHHHHHHHHhceeeechhhHHHHHHHHHHHHHHccccHHHHHHHH----HHHHHHHHHHHHHHHHhhccccchhHH
Confidence 3445567889999988776443333222222222222233333322222 223344455566666666666666777
Q ss_pred HHHHHHHhHhhHHHHHHHH
Q 040646 434 SMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 434 g~~~~~~~~g~~i~p~~~~ 452 (509)
+++.....+..+++-...+
T Consensus 97 alnl~a~Glt~fl~~~~~~ 115 (304)
T COG1079 97 ALNLLASGLTAFLGQSIFG 115 (304)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 7776666666666655554
No 321
>KOG3097 consensus Predicted membrane protein [Function unknown]
Probab=34.06 E-value=1.7e+02 Score=27.78 Aligned_cols=32 Identities=22% Similarity=0.157 Sum_probs=22.2
Q ss_pred hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHH
Q 040646 351 LSELPASLITFFLIGKLKRKSSLLGFTIMSGV 382 (509)
Q Consensus 351 ~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~ 382 (509)
+.-+...++.+.+.+++|-|.++.++......
T Consensus 69 ~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~l 100 (390)
T KOG3097|consen 69 LSLIDSSMFMPLLIRFLGTKWTMVLAVFPYAL 100 (390)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444556666899999999998876655444
No 322
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=33.86 E-value=4.6e+02 Score=25.66 Aligned_cols=24 Identities=25% Similarity=0.337 Sum_probs=12.7
Q ss_pred cccchhhhhhHHHHHHHHHHHHHH
Q 040646 193 KRRGQVGSIGFFCFTLGFLSLPAI 216 (509)
Q Consensus 193 ~~r~~~~~~~~~~~~~G~~~~~~~ 216 (509)
.+|.+...+...+.-++.++-|++
T Consensus 107 aeR~~~~~~ii~~~l~~~~vy~~~ 130 (399)
T PF00909_consen 107 AERIKFSAYIIFGFLWGGLVYPPL 130 (399)
T ss_dssp CCCCHHHHHHHHHHHCCCCTHHHH
T ss_pred eceeeehHHHHHHHHHhhhhcccc
Confidence 355555555555545455454544
No 323
>PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length.
Probab=32.12 E-value=2.4e+02 Score=23.18 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.0
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCch
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRK 138 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr 138 (509)
.+.++.+...+|..+..+-.|.|+-. +...
T Consensus 97 ~~~~~~S~~~Fg~gllGisYGilSaS-WD~~ 126 (153)
T PF11947_consen 97 WAVLLVSLVFFGLGLLGISYGILSAS-WDPE 126 (153)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcccc-cCCC
Confidence 47788889999999999999999998 8765
No 324
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=30.82 E-value=1.8e+02 Score=21.21 Aligned_cols=42 Identities=12% Similarity=0.072 Sum_probs=29.4
Q ss_pred HHHHHHHhhhhhccccCCCc-------hHHHHHHHHHHHHHHHHHHHHhH
Q 040646 118 MGCLAGGLILATLADSSLGR-------KNMLFLSCLMMSVSCLLTIFSTN 160 (509)
Q Consensus 118 ~~~~i~~~~~g~l~dr~~Gr-------r~~l~~~~~~~~i~~~~~~~~~~ 160 (509)
.+...+.+..+++.+| .-+ ++.+.++.++...+.++++...|
T Consensus 29 a~~ta~~p~~~~~~~~-~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS 77 (86)
T PF10785_consen 29 AGATAASPPLGYYMER-SAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRS 77 (86)
T ss_pred HHHHHHHHHHHHHHhc-ccccccccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455666676666 443 78888888888888888887665
No 325
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=30.50 E-value=4.8e+02 Score=27.92 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=36.7
Q ss_pred hhhhhcccc---CCCchHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHhhccchhhh
Q 040646 125 LILATLADS---SLGRKNMLFLSCLMMSVSCLLTIFSTNM-WIYSVLRFINGFGRATIGT 180 (509)
Q Consensus 125 ~~~g~l~dr---~~Grr~~l~~~~~~~~i~~~~~~~~~~~-~~l~~~r~l~G~~~g~~~~ 180 (509)
.+++-++|. .-||.+-++++.++++++++...+...+ |.+...-++.+++.++...
T Consensus 41 ~ia~~l~D~~~~~~~R~~~l~it~~~f~i~sl~v~ll~~~p~~~~~~l~~~tf~~~mlga 100 (701)
T TIGR01667 41 IIAAGLDDLDDRLTGRLKNLIITLSCFSIASFLVQLLFPKPWLFPFLLTLLTFGFILLGA 100 (701)
T ss_pred hHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 345556665 2356777888999998888888766554 4555555666666555433
No 326
>KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism]
Probab=30.34 E-value=3.9e+02 Score=27.70 Aligned_cols=58 Identities=5% Similarity=0.024 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH
Q 040646 160 NMWIYSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA 217 (509)
Q Consensus 160 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~ 217 (509)
|.++++--.++.|++.....+...-+-.+-+|++-|..+.+++....++|..++.++.
T Consensus 457 Si~W~iPQyvLig~~Evf~~vg~lEFfY~qaP~sMkS~~~al~l~t~a~G~~lss~Lv 514 (571)
T KOG1237|consen 457 SILWQIPQYVLLGAGEVFTSVGGLEFFYSQAPESMKSVATALWLLTVAVGNYLSSVLV 514 (571)
T ss_pred eHHHHHHHHHHHHHHHHHHhhhhHHHhHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667778889999999999999998999999999999999999999999999888874
No 327
>PF07760 DUF1616: Protein of unknown function (DUF1616); InterPro: IPR011674 This is a group of sequences from hypothetical archaeal proteins. The region in question is approximately 330 amino acid residues long.
Probab=30.33 E-value=1.8e+02 Score=26.88 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=35.0
Q ss_pred HHHHHHHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHhcCCcc
Q 040646 164 YSVLRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYINRGSSW 225 (509)
Q Consensus 164 l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~w 225 (509)
--..|.+.|+-. ..+...++++.-.+|++++--..--.....+++.++.|++|.+++...|
T Consensus 22 ~~~lr~~~g~~~-vlf~PGy~l~~~lfp~~~~l~~~er~~ls~glSi~~~~~~g~~l~~~~~ 82 (287)
T PF07760_consen 22 IPPLRVILGFPF-VLFLPGYALVAALFPRKHDLDGIERLALSVGLSIAIVPLIGLLLNYTPW 82 (287)
T ss_pred hhHHHHHHHHHH-HHHhccHHHHHHHccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 456677777664 3345567777777875544322222334444556667777877665444
No 328
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=28.35 E-value=2.1e+02 Score=30.51 Aligned_cols=54 Identities=22% Similarity=0.394 Sum_probs=35.0
Q ss_pred hhhhcccc---CCCchHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhhccchhh
Q 040646 126 ILATLADS---SLGRKNMLFLSCLMMSVSCLLTIFSTN-MWIYSVLRFINGFGRATIG 179 (509)
Q Consensus 126 ~~g~l~dr---~~Grr~~l~~~~~~~~i~~~~~~~~~~-~~~l~~~r~l~G~~~g~~~ 179 (509)
+.+-++|. .-||.+-++++.+++.++++...+... .|.+...-++.+++.++..
T Consensus 42 ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~~~l~~~tf~~~mlg 99 (704)
T TIGR01666 42 IAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGKPWLFAVGLTVSTFGFIMLG 99 (704)
T ss_pred HhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 44666665 245667778888888888888776554 4455556666666655433
No 329
>COG1268 BioY Uncharacterized conserved protein [General function prediction only]
Probab=27.79 E-value=1.8e+02 Score=24.83 Aligned_cols=24 Identities=13% Similarity=0.560 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCc
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGR 137 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Gr 137 (509)
+.-|.+++.+++++.|++.|| .-+
T Consensus 88 TgGyL~gfi~aa~l~G~l~~k-~~~ 111 (184)
T COG1268 88 TGGYLIGFIIAAFLIGLLAEK-IRK 111 (184)
T ss_pred chhHHHHHHHHHHHHHHHHHh-hhc
Confidence 456788999999999999999 664
No 330
>PF10183 ESSS: ESSS subunit of NADH:ubiquinone oxidoreductase (complex I) ; InterPro: IPR019329 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry represents the ESSS subunit from mitochondrial NADH:ubiquinone oxidoreductase (complex I). It carries mitochondrial import sequences [].
Probab=27.34 E-value=65 Score=24.52 Aligned_cols=30 Identities=3% Similarity=0.173 Sum_probs=23.4
Q ss_pred CCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 222 GSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 222 ~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
..+|+.+|++...++++++.+.+.+.||+.
T Consensus 56 ~e~we~~~f~~~~~~~v~~~~~~~y~PD~~ 85 (105)
T PF10183_consen 56 WEGWELPFFFGFSGSLVFGGVFLAYKPDTS 85 (105)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 357999999877777777777778888874
No 331
>PRK10263 DNA translocase FtsK; Provisional
Probab=26.19 E-value=7.5e+02 Score=28.56 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=10.9
Q ss_pred hhhhhHHHHHHHHhhhcCc
Q 040646 351 LSELPASLITFFLIGKLKR 369 (509)
Q Consensus 351 ~~~~~~~~~~g~l~dr~gr 369 (509)
.++.+|..++..+..-+|-
T Consensus 63 l~GiVGA~LAD~L~~LFGl 81 (1355)
T PRK10263 63 LGGMPGAWLADTLFFIFGV 81 (1355)
T ss_pred ccchHHHHHHHHHHHHHhH
Confidence 5555566666655555553
No 332
>PF02632 BioY: BioY family; InterPro: IPR003784 BioMNY proteins are considered to constitute tripartite biotin transporters in prokaryotes. One-third of the widespread bioY genes are linked to bioMN. Many bioY genes are located at loci encoding biotin biosynthesis, while others are unlinked to biotin metabolic or transport genes. BioY is a high-capacity transporter that is converted to a high-affinity system in the presence of BioMN. BioMNY-mediated biotin uptake is severely impaired by the replacement of the Walker A lysine residue in BioM, demonstrating the dependency of high-affinity transport on a functional ATPase [].
Probab=25.71 E-value=2.4e+02 Score=23.08 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCchH
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGRKN 139 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~ 139 (509)
+.-|.+|+.+.+.+.|++.+| ..+++
T Consensus 59 TgGyl~gf~~~a~i~g~~~~~-~~~~~ 84 (148)
T PF02632_consen 59 TGGYLLGFPLAALIIGLLAER-LKRSR 84 (148)
T ss_pred CChHHHHHHHHHHHHHHHHHh-ccccc
Confidence 345778888999999999999 87764
No 333
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=25.58 E-value=8.9e+02 Score=26.31 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHH-hcCCcchHHHHHHHhhH
Q 040646 202 GFFCFTLGFLSLPAIAYI-NRGSSWRRIYLYTSIPT 236 (509)
Q Consensus 202 ~~~~~~~G~~~~~~~~~~-~~~~~wr~~f~~~~~~~ 236 (509)
...+..++.++..+++++ +...+|...+++.++++
T Consensus 106 l~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILA 141 (810)
T TIGR00844 106 LVPVMTSGWLVIALFVWILVPGLNFPASLLMGACIT 141 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhc
Confidence 334445555555555543 35667776666555443
No 334
>COG2119 Predicted membrane protein [Function unknown]
Probab=25.39 E-value=2.5e+02 Score=23.88 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=27.9
Q ss_pred hhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHH
Q 040646 351 LSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVL 386 (509)
Q Consensus 351 ~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~ 386 (509)
+++.++.+.+.++++|+..|++..++.++..+..+.
T Consensus 145 l~s~laVl~G~~ia~ki~~r~l~~~aallFl~fal~ 180 (190)
T COG2119 145 LASVLAVLLGKLIAGKLPERLLRFIAALLFLIFALV 180 (190)
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHH
Confidence 677788888999999999999888776665554433
No 335
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=23.57 E-value=4.9e+02 Score=26.62 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=16.1
Q ss_pred HHHHHhhhhhHHHHHHHHhhhcCch
Q 040646 346 VTFNALSELPASLITFFLIGKLKRK 370 (509)
Q Consensus 346 ~~~~~~~~~~~~~~~g~l~dr~gr~ 370 (509)
..+..+.+++++..++++...++.+
T Consensus 303 i~~y~~~~~iaGy~S~~~yk~~~g~ 327 (521)
T PF02990_consen 303 IILYALTSFIAGYVSARLYKSFGGK 327 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCC
Confidence 3444566677777777777776643
No 336
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.82 E-value=4e+02 Score=20.51 Aligned_cols=8 Identities=13% Similarity=0.447 Sum_probs=3.2
Q ss_pred hcCchhHH
Q 040646 366 KLKRKSSL 373 (509)
Q Consensus 366 r~gr~~~~ 373 (509)
|++|-+..
T Consensus 7 KiN~~R~~ 14 (114)
T PF11023_consen 7 KINKIRTF 14 (114)
T ss_pred HHHHHHHH
Confidence 34444433
No 337
>PRK15049 L-asparagine permease; Provisional
Probab=20.57 E-value=9e+02 Score=24.52 Aligned_cols=7 Identities=14% Similarity=0.254 Sum_probs=3.2
Q ss_pred CChHHHH
Q 040646 30 FSSAQLV 36 (509)
Q Consensus 30 ~~~~~~~ 36 (509)
.+.+|..
T Consensus 30 L~~~~~~ 36 (499)
T PRK15049 30 MGNRQVQ 36 (499)
T ss_pred CCHhHhH
Confidence 4444443
No 338
>PF07456 Hpre_diP_synt_I: Heptaprenyl diphosphate synthase component I; InterPro: IPR010898 This family contains component I of bacterial heptaprenyl diphosphate synthase (2.5.1.30 from EC) (approximately 170 residues long). This is one of the two dissociable subunits that form the enzyme, both of which are required for the catalysis of the biosynthesis of the side chain of menaquinone-7 [].
Probab=20.53 E-value=2.9e+02 Score=22.61 Aligned_cols=51 Identities=16% Similarity=0.127 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFI 170 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l 170 (509)
.-.+.++..+.+...-.+..| ..||+.=.++.. +..+.++|..+++++.++
T Consensus 67 ~f~~Sl~Ggl~S~~vM~ll~~-~~~~~~S~~giS------i~Gai~HN~gQl~va~~i 117 (148)
T PF07456_consen 67 SFLFSLAGGLLSLLVMALLKK-LFKKKFSLIGIS------IAGAIAHNIGQLIVASLI 117 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hCCCCccHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 456777788888888888888 877665444432 344567788877777765
No 339
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=20.23 E-value=7.9e+02 Score=23.75 Aligned_cols=29 Identities=17% Similarity=-0.012 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHhhccc
Q 040646 394 WTSVEIGLELVAFFSACTAFSLLLIYTLE 422 (509)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (509)
..+...+...+.+...+.-.|..+.+...
T Consensus 104 ~~~Vly~lt~vIG~LVG~EiPL~mrml~~ 132 (508)
T COG4262 104 SRLVLYALTAVIGVLVGAEIPLLMRMLQR 132 (508)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33444444444444444445555555444
Done!