Query 040646
Match_columns 509
No_of_seqs 508 out of 2547
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 16:48:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040646.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040646hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.5E-42 5.3E-47 349.0 26.6 427 32-498 8-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6.1E-38 2.1E-42 311.9 21.5 394 32-479 24-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 1.8E-34 6.1E-39 285.8 29.4 344 33-452 23-402 (438)
4 2gfp_A EMRD, multidrug resista 100.0 2E-32 6.9E-37 265.2 12.6 318 92-453 23-348 (375)
5 4aps_A DI-OR tripeptide H+ sym 100.0 1.8E-30 6.1E-35 261.0 17.0 379 96-479 46-471 (491)
6 2cfq_A Lactose permease; trans 99.9 6E-27 2.1E-31 229.7 15.9 354 95-485 34-406 (417)
7 2xut_A Proton/peptide symporte 99.9 2.7E-26 9.3E-31 232.4 14.5 145 95-243 39-195 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.3 8.3E-12 2.9E-16 123.3 9.9 142 98-243 282-430 (451)
9 3o7q_A L-fucose-proton symport 99.3 9.2E-11 3.1E-15 115.3 17.3 128 326-453 44-175 (438)
10 2cfq_A Lactose permease; trans 99.3 4.2E-12 1.4E-16 124.1 6.3 143 108-251 260-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.2 3.5E-10 1.2E-14 113.0 15.9 137 338-476 49-193 (491)
12 2gfp_A EMRD, multidrug resista 99.2 2.2E-10 7.4E-15 110.2 13.0 161 322-484 14-180 (375)
13 2xut_A Proton/peptide symporte 99.0 4.1E-09 1.4E-13 106.1 15.3 137 340-477 51-196 (524)
14 4gc0_A D-xylose-proton symport 99.0 1.1E-08 3.6E-13 102.1 15.9 104 349-452 64-183 (491)
15 2eqf_A Tumor necrosis factor, 39.5 19 0.00065 20.7 2.0 21 59-79 5-26 (46)
16 2g9p_A Antimicrobial peptide l 36.3 6.1 0.00021 19.2 -0.3 14 126-140 2-15 (26)
17 3b9w_A Ammonium transporter fa 31.7 3.2E+02 0.011 25.5 12.6 19 124-143 92-110 (407)
18 3hd6_A Ammonium transporter RH 28.8 4E+02 0.014 25.6 12.0 14 313-326 226-239 (490)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.5e-42 Score=348.96 Aligned_cols=427 Identities=18% Similarity=0.259 Sum_probs=302.6
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccc-----cc
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECA-----SS 106 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~ 106 (509)
+|.+.+.++.+++.+..++|...++.. +|.++++|+...+ ++
T Consensus 8 ~y~~~i~~~a~lg~~~~Gyd~~~i~~~---------------------------------~~~~~~~~~~~~~~~~~~~~ 54 (491)
T 4gc0_A 8 SYIFSITLVATLGGLLFGYDTAVISGT---------------------------------VESLNTVFVAPQNLSESAAN 54 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGGT---------------------------------HHHHHHHHTGGGCCCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHhcCCCCCCcccHH
Confidence 678888888899999999998777664 6777777754321 24
Q ss_pred cccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHH------------------HHhHHHHHHHHH
Q 040646 107 LIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTI------------------FSTNMWIYSVLR 168 (509)
Q Consensus 107 ~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~------------------~~~~~~~l~~~r 168 (509)
.+.|++.+++.+|..+|++++|+++|| +|||+++.++.+++.+++++++ +++|+++++++|
T Consensus 55 ~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R 133 (491)
T 4gc0_A 55 SLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYR 133 (491)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHH
Confidence 578899999999999999999999999 9999999999999999999999 478999999999
Q ss_pred HHHhhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHHHHh---------cCCcchHHHHHHHhhHHHH
Q 040646 169 FINGFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIAYIN---------RGSSWRRIYLYTSIPTILY 239 (509)
Q Consensus 169 ~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~---------~~~~wr~~f~~~~~~~~~~ 239 (509)
+++|++.|+..+....+++|++|+++|++..++.+.+..+|.++++.++... ...+||+.+.+..++.++.
T Consensus 134 ~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
T 4gc0_A 134 IIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF 213 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence 9999999999999999999999999999999999999999999998886432 1246888888877777775
Q ss_pred HHHhheeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHH
Q 040646 240 CILVRFLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMV 319 (509)
Q Consensus 240 ~~~~~~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (509)
+...+++||||+|+..+++.+++.+.+++........+...+. ++...+.++.......++.+..........+
T Consensus 214 -~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (491)
T 4gc0_A 214 -LMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEI-----KHSLDHGRKTGGRLLMFGVGVIVIGVMLSIF 287 (491)
T ss_dssp -HHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHTTHHHHSCCTHHHHHHHHHHH
T ss_pred -hhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHH-----HHHHHhhhhhhhHHHHhcccHHHHHHHHHHH
Confidence 4666889999999999999999988888776532211110000 0000011111112223333332222222222
Q ss_pred HH-HHHhHhhhccccccccCCchH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh--ccc
Q 040646 320 TG-FGIGMVYYGMPLGLGSLSFNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM--GKI 393 (509)
Q Consensus 320 ~~-~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~--~~~ 393 (509)
.. .+.....++.+...+..+.+. .....+.++..+++.++++++.||+|||+.++.+.....++++.+... ...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~ 367 (491)
T 4gc0_A 288 QQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQA 367 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhccc
Confidence 22 223334444455555555443 334455668888999999999999999999998888777776655442 122
Q ss_pred hhHHHHHHHHHHHHH-HHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh--------hcccchhHHHH
Q 040646 394 WTSVEIGLELVAFFS-ACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA--------GRQNNFLSYGI 464 (509)
Q Consensus 394 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~--------~~~~~~~~~~~ 464 (509)
..........+...+ .....++.+.+.+|++|++.|+++.|+.+..+.++++++|.+... ...+....+.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i 447 (491)
T 4gc0_A 368 PGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWI 447 (491)
T ss_dssp CHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 222222222222222 223346778999999999999999999999999888877766531 12233455677
Q ss_pred HHHHHHHHHHHH-hhccCCCCCCCcccHHHHHHhH
Q 040646 465 FGLVIGLCGLFV-IGLPETRDTQLSDTMDEEEYKE 498 (509)
Q Consensus 465 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 498 (509)
++++++++.++. +++||||+|++||.++.-+++.
T Consensus 448 ~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 448 YGCMGVLAALFMWKFVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC---
T ss_pred HHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCC
Confidence 777777776664 6889999999987655444433
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.1e-38 Score=311.89 Aligned_cols=394 Identities=13% Similarity=0.037 Sum_probs=290.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccch
Q 040646 32 SAQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGL 111 (509)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 111 (509)
+.+++.+..++++.+..+.+....... +|.+.+|+ + +..+.|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~-~---s~~~~g~ 66 (451)
T 1pw4_A 24 RLRWQIFLGIFFGYAAYYLVRKNFALA---------------------------------MPYLVEQG-F---SRGDLGF 66 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSHHHH---------------------------------HHHTTSST-T---CSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHh-c---cHhHHHH
Confidence 567777888888888888776555443 68888898 7 4558999
Q ss_pred hHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646 112 PASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIF----STNMWIYSVLRFINGFGRATIGTCAIVLST 187 (509)
Q Consensus 112 ~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 187 (509)
+.+++.++..++++++|+++|| +|||++++++.++.+++.+++++ ++|++.++++|++.|++.+...+...+++.
T Consensus 67 ~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~ 145 (451)
T 1pw4_A 67 ALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 145 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 9999999999999999999999 99999999999999999999999 999999999999999999999999999999
Q ss_pred eeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCc-chHHHHHHHhhHHHHHHHhheeecCchHHHHhcCCHHHHHH
Q 040646 188 ELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSS-WRRIYLYTSIPTILYCILVRFLVRESPRWLFIQGRKEEAVS 265 (509)
Q Consensus 188 e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~-wr~~f~~~~~~~~~~~~~~~~~~~esp~~~~~~~~~~~~~~ 265 (509)
|++|+++|++++++.+.+..+|.+++|.++ .+....+ ||+.|++.+++.++..++.++++||+|+....++. ++
T Consensus 146 ~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--- 221 (451)
T 1pw4_A 146 HWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPI-EE--- 221 (451)
T ss_dssp TTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSC-TT---
T ss_pred HHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCCh-hh---
Confidence 999999999999999999999999999995 6677788 99999999988887776777788988752110000 00
Q ss_pred HHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCchHHH
Q 040646 266 IIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFNLYL 344 (509)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~ 344 (509)
. +.+.+ ++.+.+++++...+....+++++++.++...+..++..+.........|.++++ .|.+...
T Consensus 222 ---------~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 289 (451)
T 1pw4_A 222 ---------Y--KNDYP-DDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289 (451)
T ss_dssp ---------T--CCC--------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH
T ss_pred ---------h--ccccc-ccchhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0 00000 000000001111111124667778877766666666666555555556666665 7777654
Q ss_pred H---HHHHHhhhhhHHHHHHHHhhhc--CchhHHHHHHHHHH-HHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHHHHh
Q 040646 345 S---VTFNALSELPASLITFFLIGKL--KRKSSLLGFTIMSG-VCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSLLLI 418 (509)
Q Consensus 345 ~---~~~~~~~~~~~~~~~g~l~dr~--gr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (509)
. ....+++.+++.++.+++.||+ +||+.+..+..+.. ++.+++.+.+..+.+......++.+++.....+....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 369 (451)
T 1pw4_A 290 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGL 369 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHH
Confidence 4 3445577889999999999999 99998887776665 4444444433223333333344444555556667788
Q ss_pred hcccccchhhhhhHHHHHHHHHhH-hhHHHHHHHHh--hcccchhHHHHHHHHHHHHHHHHhhc
Q 040646 419 YTLELFPTCVRNSAISMVRQALVF-GGVFSPVLVAA--GRQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 419 ~~~~~~p~~~r~~~~g~~~~~~~~-g~~i~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
+..|.+|++.|+++.|+.+....+ |..++|.+.+. ...++...+.+.+++.+++.++.++.
T Consensus 370 ~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 370 HALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 99999999883 23345566667677666666555444
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=1.8e-34 Score=285.77 Aligned_cols=344 Identities=11% Similarity=0.076 Sum_probs=261.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhccCCCCCccccCCCCCCccCccCCCCCCceecCCCCcceeeeeccccccccccchh
Q 040646 33 AQLVQAFLVSIAWFFDAQQTFISVFTDAEPTWHCTDDSCNGVSNLCQLPKNSWSWDLQAHTSIISEWDLECASSLIKGLP 112 (509)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~c~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 112 (509)
.++..+.++++..+..+++....... .|.+++++|+ +..+.|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~g~---s~~~~g~~ 66 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDIL---------------------------------LPQFQQAFTL---TNFQAGLI 66 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHH---------------------------------HHHHHHHSCC---CSHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhHHHH---------------------------------HHHHHHHcCC---CHHHHHHH
Confidence 34555566666677777776555553 7889999999 55589999
Q ss_pred HHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHhhccchhhhhheeeeEee
Q 040646 113 ASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLT---IFSTNMWIYSVLRFINGFGRATIGTCAIVLSTEL 189 (509)
Q Consensus 113 ~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~ 189 (509)
.+.+.+++.++++++|+++|| +|||++++++.++.+++.+++ +++++++.+++.|++.|++.+...+...+++.|+
T Consensus 67 ~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~ 145 (438)
T 3o7q_A 67 QSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVL 145 (438)
T ss_dssp HHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHH
Confidence 999999999999999999999 999999999999999999999 8889999999999999999999999999999999
Q ss_pred ccCcccchhhhhhHHHHHHHHHHHHHHH-HHh-cCCc-------------------------chHHHHHHHhhHHHHHHH
Q 040646 190 VGKKRRGQVGSIGFFCFTLGFLSLPAIA-YIN-RGSS-------------------------WRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 190 ~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~-~~~~-------------------------wr~~f~~~~~~~~~~~~~ 242 (509)
+|+++|++++++.+.+.++|.++++.++ .+. ...+ ||+.|++.+++.++..++
T Consensus 146 ~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 225 (438)
T 3o7q_A 146 GPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALL 225 (438)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 555 4444 999998877776665443
Q ss_pred hh-eeecCchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHH
Q 040646 243 VR-FLVRESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTG 321 (509)
Q Consensus 243 ~~-~~~~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 321 (509)
.. ...||+++. . ++++++++...++++++++|.++...+..++..
T Consensus 226 ~~~~~~p~~~~~---------------------~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (438)
T 3o7q_A 226 IMLTKFPALQSD---------------------N-------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFCYV 271 (438)
T ss_dssp HHHCCCCCCTTT---------------------C-------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHcCCccccc---------------------c-------------cccccccchhhhHHHHHhChHHHHHHHHHHHHH
Confidence 32 234444310 0 000111223346788899988777666666555
Q ss_pred HHHhHhhhccccc-ccc-CCchHHHH---HHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhH
Q 040646 322 FGIGMVYYGMPLG-LGS-LSFNLYLS---VTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTS 396 (509)
Q Consensus 322 ~~~~~~~~~~~~~-~~~-~g~~~~~~---~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (509)
..........+.+ .++ .|.+.... .....++.+++.++.+++.||+|||+.+..+.++..++.+++.+.+ ...
T Consensus 272 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 349 (438)
T 3o7q_A 272 GAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--GHV 349 (438)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--HHH
T ss_pred HHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--CcH
Confidence 5554444445555 554 37765544 3444577888999999999999999999988888877776666633 222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 397 VEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.... .++.+++.+..++..+.+..|.+|++ ++.+.++.. ...+|+.++|.+.+
T Consensus 350 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g 402 (438)
T 3o7q_A 350 GLIA-LTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMG 402 (438)
T ss_dssp HHHH-HHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHH
Confidence 2233 23444556667788888989999977 888888776 66789999999888
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.97 E-value=2e-32 Score=265.22 Aligned_cols=318 Identities=14% Similarity=0.130 Sum_probs=241.0
Q ss_pred CcceeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040646 92 HTSIISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFIN 171 (509)
Q Consensus 92 ~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~ 171 (509)
+|.+.+++|. +..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++.+++.++.+++++++.+++.|++.
T Consensus 23 ~~~~~~~~g~---s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~ 98 (375)
T 2gfp_A 23 IADMARDLNV---REGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQ 98 (375)
T ss_dssp HHHHHTTSSS---TTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 6888999999 55589999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhccchhhhhheeeeEeeccCcccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheeecCc
Q 040646 172 GFGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLVRES 250 (509)
Q Consensus 172 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~es 250 (509)
|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.++ .+.+..+||+.|++.+++.++..+...+.+||+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 99 GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 9999999999999999999999999999999999999999999995 555556899999999888887665566778887
Q ss_pred hHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhHhhhc
Q 040646 251 PRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGMVYYG 330 (509)
Q Consensus 251 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (509)
|+. ++ + +++...++++++++|.++...+..++...........
T Consensus 179 ~~~---~~----------------~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2gfp_A 179 RPV---DA----------------P------------------RTRLLTSYKTLFGNSGFNCYLLMLIGGLAGIAAFEAC 221 (375)
T ss_dssp STT---TC----------------C------------------CCCTTTCSTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---Cc----------------c------------------cccHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHH
Confidence 531 00 0 0011123456777887766666666666666555666
Q ss_pred ccccccc-CCchHHHHHHH---HHhhhhhHHHHHHHHhhhcCchhHHHHHHHH-HHHHHH--HHHHhccchhHHHHHHHH
Q 040646 331 MPLGLGS-LSFNLYLSVTF---NALSELPASLITFFLIGKLKRKSSLLGFTIM-SGVCSV--LCVVMGKIWTSVEIGLEL 403 (509)
Q Consensus 331 ~~~~~~~-~g~~~~~~~~~---~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~ 403 (509)
.|.+.++ .|.+......+ ..++.+++.++.+++.||.+++ +..+... ...+.. ........+.+......+
T Consensus 222 ~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (375)
T 2gfp_A 222 SGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAA 299 (375)
T ss_dssp CSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHH
Confidence 6777665 67765554433 3466777788888888888772 2222222 122111 111111122333333344
Q ss_pred HHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 404 VAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
+.+++.+...+....+..|..| ++|+++.|+.+....+|..++|.+.+.
T Consensus 300 l~g~~~~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~ 348 (375)
T 2gfp_A 300 LFFFGAGMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAM 348 (375)
T ss_dssp HHHHHHHHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTH
T ss_pred HHHHHHHHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666677788889999998 889999999999999999998888773
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.97 E-value=1.8e-30 Score=260.97 Aligned_cols=379 Identities=13% Similarity=0.063 Sum_probs=237.0
Q ss_pred eeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhc
Q 040646 96 ISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFG 174 (509)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~ 174 (509)
++|+|+ +..+.+++.+.+.++..++++++|+++|| + |||+++..+.++.+++.+++++++|++.++++|++.|++
T Consensus 46 ~~~~~~---s~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 121 (491)
T 4aps_A 46 TGDLHI---TRATAASIMAIYASMVYLSGTIGGFVADR-IIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIG 121 (491)
T ss_dssp HTSCCS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHH
T ss_pred hhhcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345898 55589999999999999999999999998 6 999999999999999999999999999999999999999
Q ss_pred cchhhhhheeeeEeeccCcc--cchhhhhhHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 175 RATIGTCAIVLSTELVGKKR--RGQVGSIGFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 175 ~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
.+...+...+++.|++|+++ |+.++++++.+.++|..++|.+ +.+.+..|||+.|++.++..++..+...+..|+..
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 201 (491)
T 4aps_A 122 TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTL 201 (491)
T ss_dssp HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccc
Confidence 99999999999999999988 7778888999999999999999 56677789999999987776664444333222211
Q ss_pred H----HHHhcCCHHHHHHHHHH--------------HHhhcCCccccccccCccc-----c---cccccccchhHHHHHH
Q 040646 252 R----WLFIQGRKEEAVSIIKS--------------ISTSENQRSLIMDFNNVSF-----E---QETWNVDLYSAIKILV 305 (509)
Q Consensus 252 ~----~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~l~ 305 (509)
+ ....+.+.++..+..+. ... .+..+.+........ . .....++...+..+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (491)
T 4aps_A 202 DPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNL-VGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHL 280 (491)
T ss_dssp CSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHH-HSSCCTTHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHh-ccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHH
Confidence 0 00001122222221111 000 010000000000000 0 0000000000000000
Q ss_pred hchHHHHHHHHHHHHHHHHhHhhhcccccccc-CCch---HHHHHHHHHhhhhhHHHHHHHHhhhcCchhHHH-----HH
Q 040646 306 EKKWALRRLSAIMVTGFGIGMVYYGMPLGLGS-LSFN---LYLSVTFNALSELPASLITFFLIGKLKRKSSLL-----GF 376 (509)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~---~~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~-----~~ 376 (509)
+..............+..........+.+.++ .+.+ .........+..+++.++.+++.||++||+... .+
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~ 360 (491)
T 4aps_A 281 RVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVG 360 (491)
T ss_dssp -CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHH
Confidence 11111122222222233333222223333322 2222 333445556777778889999999999986544 55
Q ss_pred HHHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHH
Q 040646 377 TIMSGVCSVLCVVMG-------KIWTSVEIGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPV 449 (509)
Q Consensus 377 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~ 449 (509)
..+.+++.+++.... ....+......++.+++.+...+....+..|.+|++.|+++.|+.+....+|..++|.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~ 440 (491)
T 4aps_A 361 LMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQ 440 (491)
T ss_dssp HHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555554444321 1123333333444455555666788899999999999999999999999999999999
Q ss_pred HHHhh-cccchhHHHHHHHHHHHHHHHHhhc
Q 040646 450 LVAAG-RQNNFLSYGIFGLVIGLCGLFVIGL 479 (509)
Q Consensus 450 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (509)
+.+.. ..+....+.+++++.+++.++.+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 441 LVTLYNAKSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 98843 3344556666666666665554443
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=6e-27 Score=229.72 Aligned_cols=354 Identities=12% Similarity=0.038 Sum_probs=215.5
Q ss_pred eeeeeccccccccccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHH---HHHHHhHHH-HHHHHHHH
Q 040646 95 IISEWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCL---LTIFSTNMW-IYSVLRFI 170 (509)
Q Consensus 95 i~~~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~---~~~~~~~~~-~l~~~r~l 170 (509)
+++++|+ +..+.|++.+.+.+++.++++++|+++|| +|||++++++..+.+++.. ...+++... .+...+++
T Consensus 34 l~~~~g~---s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (417)
T 2cfq_A 34 LHDINHI---SKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIV 109 (417)
T ss_dssp HHTTTCC---CTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHG
T ss_pred HHHHhCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888 45589999999999999999999999999 9999999998887765322 122333221 24556777
Q ss_pred HhhccchhhhhheeeeEeeccC--cccchhhhhhHHHHHHHHHHHHHHH-HHhcCCcchHHHHHHHhhHHHHHHHhheee
Q 040646 171 NGFGRATIGTCAIVLSTELVGK--KRRGQVGSIGFFCFTLGFLSLPAIA-YINRGSSWRRIYLYTSIPTILYCILVRFLV 247 (509)
Q Consensus 171 ~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 247 (509)
.|++.+...+.....+.++.++ ++|+...+....+..+|..++|.++ ++.+ .+||+.|++.+++.++..+. .++.
T Consensus 110 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~-~~~~ 187 (417)
T 2cfq_A 110 GGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVL-LFFA 187 (417)
T ss_dssp GGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHH-SCSS
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHH-HHHc
Confidence 7776666555555545555543 4567777888788888999999884 4443 57999999887776554333 3334
Q ss_pred c-CchHHHHhcCCHHHHHHHHHHHHhhcCCccccccccCcccccccccccchhHHHHHHhchHHHHHHHHHHHHHHHHhH
Q 040646 248 R-ESPRWLFIQGRKEEAVSIIKSISTSENQRSLIMDFNNVSFEQETWNVDLYSAIKILVEKKWALRRLSAIMVTGFGIGM 326 (509)
Q Consensus 248 ~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 326 (509)
+ |+|+ +.+ .. +.+ + +++++....++++++++|.++...+..+........
T Consensus 188 ~~~~~~----~~~--------------~~--~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (417)
T 2cfq_A 188 KTDAPS----SAT--------------VA--NAV----G-----ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDV 238 (417)
T ss_dssp CCCCSC----SSC--------------SS--SSS----S-----SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred Cccccc----ccc--------------cc--ccc----c-----cccccccHHHHHHHhcCCchhhHHHHHHHHHHHHHH
Confidence 4 3321 000 00 000 0 000111223466788888765544433322222221
Q ss_pred hhhcccccccc-CC---chH---HHHHHHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 040646 327 VYYGMPLGLGS-LS---FNL---YLSVTFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEI 399 (509)
Q Consensus 327 ~~~~~~~~~~~-~g---~~~---~~~~~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (509)
.....|.++.+ .+ .+. .....+..++.+++.++.++++||+|||+.+..+..+.++..+.+.+.. +.+...
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~ 316 (417)
T 2cfq_A 239 FDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT--SALEVV 316 (417)
T ss_dssp HHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC--SHHHHH
T ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc--cHHHHH
Confidence 11112322221 12 112 1223344466778899999999999999998887777766655544422 222222
Q ss_pred HHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHH-HHHHhHhhHHHHHHHHhhc--ccchhHHHHHHHHHHHHHHHH
Q 040646 400 GLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMV-RQALVFGGVFSPVLVAAGR--QNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~-~~~~~~g~~i~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 476 (509)
....+..+......+..+.+..|.+|++.|+++.++. +....+|+.++|.+.+... .+....+.+.+++.+++.++.
T Consensus 317 ~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~ 396 (417)
T 2cfq_A 317 ILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLIS 396 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 2222233333344455678999999999999999985 7778899999999888322 233445666666666666554
Q ss_pred h-hccCCCCC
Q 040646 477 I-GLPETRDT 485 (509)
Q Consensus 477 ~-~~~~~~~~ 485 (509)
+ ..+|+++.
T Consensus 397 ~~~~~~~~~~ 406 (417)
T 2cfq_A 397 VFTLSGPGPL 406 (417)
T ss_dssp TTSSCCSCTT
T ss_pred HhhhcCCCch
Confidence 3 34554433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.93 E-value=2.7e-26 Score=232.38 Aligned_cols=145 Identities=11% Similarity=0.127 Sum_probs=129.5
Q ss_pred eeeeec------cccccccccchhHHHHHHHHHHHHhhhhhccccCC-CchHHHHHHHHHHHHHHHHHHHHh-HHHHHHH
Q 040646 95 IISEWD------LECASSLIKGLPASSFFMGCLAGGLILATLADSSL-GRKNMLFLSCLMMSVSCLLTIFST-NMWIYSV 166 (509)
Q Consensus 95 i~~~~~------~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~l~~ 166 (509)
+.+++| + +..+.+++.+.+.++..++++++|+++|| + |||+++.++.++.+++.+++++++ +++.+++
T Consensus 39 l~~~~~~~~~~~~---s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (524)
T 2xut_A 39 LMTALLLSIPEEL---RGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYT 114 (524)
T ss_dssp HHHSCSSCCSSST---TTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHHhcccccccc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 455666 7 45589999999999999999999999999 9 999999999999999999999999 9999999
Q ss_pred HHHHHhhccchhhhhheeeeEeeccCcccchhhhh---hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHH
Q 040646 167 LRFINGFGRATIGTCAIVLSTELVGKKRRGQVGSI---GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCIL 242 (509)
Q Consensus 167 ~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~ 242 (509)
.|++.|++.+...+...+++.|++|+++|+++.+. .+.+.++|.+++|.+ +.+.+..+||+.|++.+++.++..+.
T Consensus 115 ~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~ 194 (524)
T 2xut_A 115 GLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVF 194 (524)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999877666 889999999999998 56777789999999988877665444
Q ss_pred h
Q 040646 243 V 243 (509)
Q Consensus 243 ~ 243 (509)
.
T Consensus 195 ~ 195 (524)
T 2xut_A 195 F 195 (524)
T ss_dssp H
T ss_pred H
Confidence 3
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.28 E-value=8.3e-12 Score=123.26 Aligned_cols=142 Identities=15% Similarity=0.115 Sum_probs=121.9
Q ss_pred eeccccccccccchhHHHHHHHHHHHHhhhhhccccCC--CchHHHHHHHHHHH-HHHHHHHHH--hHHHHHHHHHHHHh
Q 040646 98 EWDLECASSLIKGLPASSFFMGCLAGGLILATLADSSL--GRKNMLFLSCLMMS-VSCLLTIFS--TNMWIYSVLRFING 172 (509)
Q Consensus 98 ~~~~~~~~~~~~~~~~s~~~~~~~i~~~~~g~l~dr~~--Grr~~l~~~~~~~~-i~~~~~~~~--~~~~~l~~~r~l~G 172 (509)
.+|+ +..+.+++.+...++..++.++.|++.|| + |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|
T Consensus 282 ~~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 357 (451)
T 1pw4_A 282 VKHF---ALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG 357 (451)
T ss_dssp BSCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHH
T ss_pred hcCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHH
Confidence 3777 44478999999999999999999999999 9 99999888877766 666666665 36788888889999
Q ss_pred hccchhhhhheeeeEeeccCcccchhhhhhHHHHHH-HHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHh
Q 040646 173 FGRATIGTCAIVLSTELVGKKRRGQVGSIGFFCFTL-GFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILV 243 (509)
Q Consensus 173 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~ 243 (509)
++.+...+....++.|.+|+++|+++.++.+....+ |..++|.+ +.+.+..||+..|++.++..++..+..
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 358 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 998988888899999999999999999999999999 99999998 678888899999999888777755443
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.27 E-value=9.2e-11 Score=115.30 Aligned_cols=128 Identities=9% Similarity=0.004 Sum_probs=99.3
Q ss_pred HhhhccccccccCCchHHHHH---HHHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHh-ccchhHHHHHH
Q 040646 326 MVYYGMPLGLGSLSFNLYLSV---TFNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVM-GKIWTSVEIGL 401 (509)
Q Consensus 326 ~~~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 401 (509)
......|.+.++++.+..... ....++..++.++.|+++||+|||+.+..+.++.+++.++.... ..++.+..+..
T Consensus 44 ~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 123 (438)
T 3o7q_A 44 LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVG 123 (438)
T ss_dssp HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHH
Confidence 333445667777887765544 34447778899999999999999999999999988888777321 12334444455
Q ss_pred HHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHh
Q 040646 402 ELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAA 453 (509)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~ 453 (509)
.++.+++.+...+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.
T Consensus 124 ~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 124 LFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677777788889999999999999999999999999999999998873
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.25 E-value=4.2e-12 Score=124.05 Aligned_cols=143 Identities=13% Similarity=0.152 Sum_probs=119.8
Q ss_pred ccchhHHHHHHHHHHHHhhhhhccccCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccchhhhhheeeeE
Q 040646 108 IKGLPASSFFMGCLAGGLILATLADSSLGRKNMLFLSCLMMSVSCLLTIFSTNMWIYSVLRFINGFGRATIGTCAIVLST 187 (509)
Q Consensus 108 ~~~~~~s~~~~~~~i~~~~~g~l~dr~~Grr~~l~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 187 (509)
..++..+...++..++.++.|+++|| +|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....++.
T Consensus 260 ~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 338 (417)
T 2cfq_A 260 VFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYIT 338 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888889999999999999 99999999998888888777777778888888888888887777777788999
Q ss_pred eeccCcccchhhhh-hHHHHHHHHHHHHHH-HHHhcCCcchHHHHHHHhhHHHHHHHhheeecCch
Q 040646 188 ELVGKKRRGQVGSI-GFFCFTLGFLSLPAI-AYINRGSSWRRIYLYTSIPTILYCILVRFLVRESP 251 (509)
Q Consensus 188 e~~~~~~r~~~~~~-~~~~~~~G~~~~~~~-~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~~esp 251 (509)
|.+|++.|+++.++ ++....+|..++|.+ +.+.+..|++..|.+.++..++..+..+...||.+
T Consensus 339 ~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 339 SQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999999998 588888999999998 66777778899999888887776655556666653
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.17 E-value=3.5e-10 Score=112.99 Aligned_cols=137 Identities=10% Similarity=0.097 Sum_probs=101.0
Q ss_pred CCchHHHHH---HHHHhhhhhHHHHHHHHhhh-cCchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHh
Q 040646 338 LSFNLYLSV---TFNALSELPASLITFFLIGK-LKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAF 413 (509)
Q Consensus 338 ~g~~~~~~~---~~~~~~~~~~~~~~g~l~dr-~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (509)
+|.+..... ....++..++.++.|+++|| +|||+.+..+.++.+++.+++.+.. +.+......++.+++.+...
T Consensus 49 ~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~~ 126 (491)
T 4aps_A 49 LHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPF--GASALFGSIILIIIGTGFLK 126 (491)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCC--STTHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHhcc
Confidence 677765544 44457788899999999999 8999999999998888887776633 33334444455566677777
Q ss_pred HHHHhhcccccchhh--hhhHHHHHHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHH
Q 040646 414 SLLLIYTLELFPTCV--RNSAISMVRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFV 476 (509)
Q Consensus 414 ~~~~~~~~~~~p~~~--r~~~~g~~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 476 (509)
+...+++.|.+|++. |+.+.++.+....+|..++|.+.+.. ..++...+.+.++..+++.+..
T Consensus 127 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 127 PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 888999999999988 77788888899999999999988832 2345556666655555544443
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.16 E-value=2.2e-10 Score=110.17 Aligned_cols=161 Identities=11% Similarity=0.019 Sum_probs=115.2
Q ss_pred HHHhHhhhccccccccCCchHHHHHH---HHHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhccchhHHH
Q 040646 322 FGIGMVYYGMPLGLGSLSFNLYLSVT---FNALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMGKIWTSVE 398 (509)
Q Consensus 322 ~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (509)
+.........|.+.++.|.+...... ...++..++.++.|+++||+|||+.+..+..+..++.++.... ++.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~~~l 91 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT--SSLTVL 91 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--ccHHHH
Confidence 33344444456677788887655543 3447777889999999999999999999998888888777763 334444
Q ss_pred HHHHHHHHHHHHHHhHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHHhhcc--cchhHHHHHHHHHHHHHHH-
Q 040646 399 IGLELVAFFSACTAFSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVAAGRQ--NNFLSYGIFGLVIGLCGLF- 475 (509)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~~~~~--~~~~~~~~~~~~~~~~~~~- 475 (509)
....++.+++.+...+....+..|.+|+++|+++.++.+....+|..++|.+.+.... ++...+.+.++..++..+.
T Consensus 92 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 171 (375)
T 2gfp_A 92 IAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSM 171 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 4445555666667778888999999999999999999999999999999999884333 3344555555555544442
Q ss_pred HhhccCCCC
Q 040646 476 VIGLPETRD 484 (509)
Q Consensus 476 ~~~~~~~~~ 484 (509)
.+.+||+++
T Consensus 172 ~~~~~~~~~ 180 (375)
T 2gfp_A 172 ARWMPETRP 180 (375)
T ss_dssp CCSSCCCST
T ss_pred HHHCcccCC
Confidence 345565543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.01 E-value=4.1e-09 Score=106.12 Aligned_cols=137 Identities=9% Similarity=0.089 Sum_probs=98.2
Q ss_pred chHH---HHHHHHHhhhhhHHHHHHHHhhhc-CchhHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhHH
Q 040646 340 FNLY---LSVTFNALSELPASLITFFLIGKL-KRKSSLLGFTIMSGVCSVLCVVMGKIWTSVEIGLELVAFFSACTAFSL 415 (509)
Q Consensus 340 ~~~~---~~~~~~~~~~~~~~~~~g~l~dr~-gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (509)
.+.. .......++.+++.++.|+++||+ |||+.+..+.++.+++.+++.+... +.+..+...++.+++.+...+.
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEH-SVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHTTHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhccccchh
Confidence 5543 344455577888999999999999 9999999998888888777776431 3333444445555666677788
Q ss_pred HHhhcccccchhhhhhHHHH---HHHHHhHhhHHHHHHHHhh--cccchhHHHHHHHHHHHHHHHHh
Q 040646 416 LLIYTLELFPTCVRNSAISM---VRQALVFGGVFSPVLVAAG--RQNNFLSYGIFGLVIGLCGLFVI 477 (509)
Q Consensus 416 ~~~~~~~~~p~~~r~~~~g~---~~~~~~~g~~i~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 477 (509)
..+++.|.+|++.|+++.+. .+....+|..++|.+.+.. ..++...+.+.+++.+++.+..+
T Consensus 130 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 130 VSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999876666 7888899999999887732 23445556666665555444443
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.95 E-value=1.1e-08 Score=102.13 Aligned_cols=104 Identities=14% Similarity=0.133 Sum_probs=84.2
Q ss_pred HHhhhhhHHHHHHHHhhhcCchhHHHHHHHHHHHHHHHHHHhc----------------cchhHHHHHHHHHHHHHHHHH
Q 040646 349 NALSELPASLITFFLIGKLKRKSSLLGFTIMSGVCSVLCVVMG----------------KIWTSVEIGLELVAFFSACTA 412 (509)
Q Consensus 349 ~~~~~~~~~~~~g~l~dr~gr~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~ 412 (509)
..++.++|.++.|+++||+|||+.+.++.++..++.++..+.. .++....++.-++.+++.+..
T Consensus 64 ~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~ 143 (491)
T 4gc0_A 64 ALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLA 143 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3477889999999999999999999999998888887766421 233444555556667777888
Q ss_pred hHHHHhhcccccchhhhhhHHHHHHHHHhHhhHHHHHHHH
Q 040646 413 FSLLLIYTLELFPTCVRNSAISMVRQALVFGGVFSPVLVA 452 (509)
Q Consensus 413 ~~~~~~~~~~~~p~~~r~~~~g~~~~~~~~g~~i~p~~~~ 452 (509)
.+....++.|..|++.|+...++.+....+|..+++.+..
T Consensus 144 ~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~ 183 (491)
T 4gc0_A 144 SMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNY 183 (491)
T ss_dssp HHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcch
Confidence 8899999999999999999999999888888877776654
No 15
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=39.51 E-value=19 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.650 Sum_probs=16.1
Q ss_pred CCCCCccccCCCCCCc-cCccC
Q 040646 59 DAEPTWHCTDDSCNGV-SNLCQ 79 (509)
Q Consensus 59 ~~~~~~~c~~~~~~~~-~~~c~ 79 (509)
+..|..+|..+.|+.+ +++|+
T Consensus 5 ~~~pKqrC~apgCdhygN~kc~ 26 (46)
T 2eqf_A 5 SSGPKQRCRAPACDHFGNAKCN 26 (46)
T ss_dssp CCCCSCSCSSTTCCSCCBGGGT
T ss_pred CCcccccccCcccccccchhhh
Confidence 4567889999999887 55664
No 16
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=36.30 E-value=6.1 Score=19.25 Aligned_cols=14 Identities=29% Similarity=0.665 Sum_probs=10.6
Q ss_pred hhhhccccCCCchHH
Q 040646 126 ILATLADSSLGRKNM 140 (509)
Q Consensus 126 ~~g~l~dr~~Grr~~ 140 (509)
++|.+..+ ||||.+
T Consensus 2 lfgklikk-fgrkai 15 (26)
T 2g9p_A 2 LFGKLIKK-FGRKAI 15 (26)
T ss_dssp HHHHHHHH-HTSHHH
T ss_pred cHHHHHHH-HhHHHH
Confidence 35778888 999864
No 17
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=31.65 E-value=3.2e+02 Score=25.47 Aligned_cols=19 Identities=11% Similarity=0.090 Sum_probs=9.7
Q ss_pred HhhhhhccccCCCchHHHHH
Q 040646 124 GLILATLADSSLGRKNMLFL 143 (509)
Q Consensus 124 ~~~~g~l~dr~~Grr~~l~~ 143 (509)
.++.|-+++| ..-...++.
T Consensus 92 ~IvsGAvaeR-~kf~~~li~ 110 (407)
T 3b9w_A 92 LIAMGAVLGR-LRVFQYALL 110 (407)
T ss_dssp HHHHHHHTTS-SCHHHHHHH
T ss_pred HHHHHHHhhc-ccHHHHHHH
Confidence 3455666666 444444443
No 18
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=28.81 E-value=4e+02 Score=25.59 Aligned_cols=14 Identities=0% Similarity=-0.218 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHhH
Q 040646 313 RLSAIMVTGFGIGM 326 (509)
Q Consensus 313 ~~~~~~~~~~~~~~ 326 (509)
..+..++.|++...
T Consensus 226 a~LGt~lLW~GWfG 239 (490)
T 3hd6_A 226 AMIGTLFLWMYWPS 239 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444555554433
Done!