BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040647
(286 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6S591|JAG_ARATH Zinc finger protein JAGGED OS=Arabidopsis thaliana GN=JAG PE=2 SV=1
Length = 253
Score = 153 bits (387), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 121/261 (46%), Positives = 148/261 (56%), Gaps = 37/261 (14%)
Query: 1 RPENNPLDLNNLPEDYSKQVLDESSSTGAGAGHRKKKSGAKDGKDDECGKVYECRFCSLK 60
R E N LDLNNLP+D+SK ++ G+ +G RKKK G+K+GKD E GKVYECRFCSLK
Sbjct: 2 RHEENYLDLNNLPDDFSKDGNKQALEEGSSSGQRKKK-GSKEGKD-ESGKVYECRFCSLK 59
Query: 61 FCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAVQGPPPHLGCHPMTPGSYHPAG 120
FCKSQALGGHMNRHRQERETETLN+ARQLV++ ND + G ++P YH
Sbjct: 60 FCKSQALGGHMNRHRQERETETLNQARQLVYR-NDTITPPG---------ISPFGYH--- 106
Query: 121 HIGDP--FRSIY-PPRLYSTGSSSTLISPPPPPPQPPQYPYPSSTSLASCPSHQYPPHQP 177
H DP +RS+Y P +Y SS+ L+ PP PP PP YPY S+ QY PH
Sbjct: 107 HTTDPTIYRSVYSSPMIYPGSSSTNLVPQPPMPPPPPPYPYSSN---------QYSPHNH 157
Query: 178 MNELYVGHVL----SSSPHSQYPHNQSNLNNFMDS----SYTCIGAPVG-HGFVAGSSRG 228
N+ Y+ S SP P + ++ DS YTC+GAP+G GF
Sbjct: 158 FNDYYLNPSFRGSRSISPSPNLP-TTTTVDYMADSPVEPGYTCVGAPIGPTGFPIRGPSI 216
Query: 229 SDMAGSSSGGRDGSLSNQDQD 249
GRDG S Q D
Sbjct: 217 VRAPLEPPQGRDGDASRQRLD 237
>sp|Q9LG97|SL1_ORYSJ Zinc finger protein STAMENLESS 1 OS=Oryza sativa subsp. japonica
GN=SL1 PE=2 SV=1
Length = 263
Score = 125 bits (313), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 80/102 (78%), Gaps = 2/102 (1%)
Query: 1 RPENNPLDLNNLPEDYSKQVLDESSSTGAGAGHRKKKSGAK-DGKDDECGKVYECRFCSL 59
R E +PLDLNNLP+++ KQ ++ S++T A + + + K +G DE GKVYECRFCSL
Sbjct: 6 RQEGSPLDLNNLPDEFGKQTVESSTTTAASSAEASRVTKKKSNGGKDEAGKVYECRFCSL 65
Query: 60 KFCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAVQG 101
KFCKSQALGGHMNRHRQERETETLN+ARQLVF ND+LA G
Sbjct: 66 KFCKSQALGGHMNRHRQERETETLNRARQLVFG-NDSLAAVG 106
>sp|Q6S592|JGL_ARATH Zinc finger protein JAGGED-like OS=Arabidopsis thaliana GN=JGL PE=2
SV=1
Length = 207
Score = 119 bits (298), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 91/224 (40%), Positives = 120/224 (53%), Gaps = 40/224 (17%)
Query: 3 ENNPLDLNNLPEDYSKQVL--DESSSTGAGAGHRKKKSGAKDGKDDECGKVYECRFCSLK 60
ENN LDLNNLP+D S+ + E + + + ++ KDGK+ YECRFCSLK
Sbjct: 5 ENNTLDLNNLPDDPSRDIFPFFEEGFSSSSSSGGFREKQTKDGKE------YECRFCSLK 58
Query: 61 FCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAVQGPPPHLGCHPMTPGSYHPAG 120
F KSQALGGHMNRHRQERETE+LNKAR+LV +++ QGPP SYH
Sbjct: 59 FFKSQALGGHMNRHRQERETESLNKARELVLRNDSFPPHQGPPSF---------SYHQGD 109
Query: 121 -HIGDPFR---SIYPPRLYSTGSSSTLISPPPPPPQPPQYPYPSSTSLASCPSHQYPPHQ 176
HIGD + +YPPR +S SS+++ PP Y YP +S
Sbjct: 110 VHIGDLTQFKPMMYPPRHFSLPGSSSILQLQPP------YLYPPLSSPF----------- 152
Query: 177 PMNELYVGHVLSSSPHSQYPHNQSNLNNFMDSSYTCIGAPVGHG 220
P + +G+ + + H ++ DSSYT IGAPV +G
Sbjct: 153 PQHNTNIGN--NGTRHQTLTNSVCGGRALPDSSYTFIGAPVANG 194
>sp|Q39265|ZFP6_ARATH Zinc finger protein 6 OS=Arabidopsis thaliana GN=ZFP6 PE=2 SV=1
Length = 197
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 58/141 (41%), Gaps = 42/141 (29%)
Query: 11 NLPEDYSKQVLDESSSTGAGAGHRKKKSGAKDGKDDECGKVYECRFCSLKFCKSQALGGH 70
NL E S Q G+G+G +K YEC++C +F SQALGGH
Sbjct: 14 NLLETTSVQNQSSEPRPGSGSGSESRK--------------YECQYCCREFANSQALGGH 59
Query: 71 MNRHRQERETETLNKARQLVFQHNDNLAVQGPPPHLGCHPMTPGSYHPAGHIGDPFRSIY 130
N H++ER+ + + LA +G P H HP T +P S +
Sbjct: 60 QNAHKKERQ----------LLKRAQMLATRGLPRHHNFHPHT-----------NPLLSAF 98
Query: 131 PPRLYSTGSSSTLISPPPPPP 151
P + L+S P PPP
Sbjct: 99 APLPH-------LLSQPHPPP 112
>sp|Q39261|ZFP2_ARATH Zinc finger protein 2 OS=Arabidopsis thaliana GN=ZFP2 PE=2 SV=1
Length = 150
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAVQGPPPHLG 107
+V+ C +C KF SQALGGH N H+ ER TL K + +F+ ++ + P P G
Sbjct: 50 RVFSCNYCQRKFYSSQALGGHQNAHKLER---TLAKKSRELFRSSNTVDSDQPYPFSG 104
>sp|Q39266|ZFP7_ARATH Zinc finger protein 7 OS=Arabidopsis thaliana GN=ZFP7 PE=2 SV=1
Length = 209
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 3/40 (7%)
Query: 42 DGKDDECG---KVYECRFCSLKFCKSQALGGHMNRHRQER 78
D K +C +V+ C +C KF SQALGGH N H++ER
Sbjct: 46 DTKSTKCEANPRVFSCNYCRRKFYSSQALGGHQNAHKRER 85
>sp|Q9SR34|TAC1_ARATH Transcriptional regulator TAC1 OS=Arabidopsis thaliana GN=TAC1
PE=2 SV=1
Length = 172
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 52 YECRFCSLKFCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAV 99
Y C FC F +QALGGHMN HR++R K RQ + + N + V
Sbjct: 35 YVCSFCIRGFSNAQALGGHMNIHRRDRA-----KLRQKLMEDNKDDVV 77
>sp|Q42485|ZFP1_ARATH Zinc finger protein 1 OS=Arabidopsis thaliana GN=ZFP1 PE=2 SV=1
Length = 228
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQER 78
+V+ C +C KF SQALGGH N H++ER
Sbjct: 66 RVFSCNYCQRKFYSSQALGGHQNAHKRER 94
>sp|Q39263|ZFP4_ARATH Zinc finger protein 4 OS=Arabidopsis thaliana GN=ZFP4 PE=2 SV=2
Length = 260
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQER 78
+V+ C +C KF SQALGGH N H++ER
Sbjct: 83 RVFSCNYCQRKFYSSQALGGHQNAHKRER 111
>sp|Q9FFX4|KNU_ARATH Zinc finger protein KNUCKLES OS=Arabidopsis thaliana GN=KNU PE=1
SV=1
Length = 161
Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQERETETLN 84
+++ C++C KF SQALGGH N H++ER N
Sbjct: 36 RLFPCQYCPRKFYTSQALGGHQNAHKRERAAARRN 70
>sp|Q681X4|ZAT5_ARATH Zinc finger protein ZAT5 OS=Arabidopsis thaliana GN=ZAT5 PE=2 SV=1
Length = 286
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 46 DECGKVYECRFCSLKFCKSQALGGHMNRHR 75
++ KV+EC C +F QALGGHM RHR
Sbjct: 184 NKANKVHECSICGSEFTSGQALGGHMRRHR 213
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 51 VYECRFCSLKFCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAVQGPPPHL 106
VYEC+ C+ F QALGGH H++ R T T K R + Q + + +G H
Sbjct: 114 VYECKTCNRTFSSFQALGGHRASHKKPR-TSTEEKTRLPLTQPKSSASEEGQNSHF 168
>sp|Q38895|SUP_ARATH Transcriptional regulator SUPERMAN OS=Arabidopsis thaliana GN=SUP
PE=1 SV=1
Length = 204
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQERETETLNK 85
+ Y C FC +F +QALGGHMN HR++R L +
Sbjct: 45 RSYTCSFCKREFRSAQALGGHMNVHRRDRARLRLQQ 80
>sp|Q9LHS9|RBE_ARATH Probable transcriptional regulator RABBIT EARS OS=Arabidopsis
thaliana GN=RBE PE=2 SV=2
Length = 226
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQER 78
+ Y C FC +F +QALGGHMN HR++R
Sbjct: 53 RSYSCSFCGREFKSAQALGGHMNVHRRDR 81
>sp|Q39262|ZFP3_ARATH Zinc finger protein 3 OS=Arabidopsis thaliana GN=ZFP3 PE=2 SV=1
Length = 235
Score = 40.4 bits (93), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRHRQER 78
K++ C +C F SQALGGH N H++ER
Sbjct: 59 KLFSCNYCQRTFYSSQALGGHQNAHKRER 87
>sp|Q39264|ZFP5_ARATH Zinc finger protein 5 OS=Arabidopsis thaliana GN=ZFP5 PE=2 SV=1
Length = 211
Score = 35.8 bits (81), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 50 KVYECRFCSLKFCKSQALGGHMNRH 74
K +EC++C +F SQALGGH N H
Sbjct: 58 KRHECQYCGKEFANSQALGGHQNAH 82
>sp|Q9LX85|ZAT8_ARATH Zinc finger protein ZAT8 OS=Arabidopsis thaliana GN=ZAT8 PE=2 SV=1
Length = 164
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 33/72 (45%), Gaps = 11/72 (15%)
Query: 18 KQVLDESSSTGAGAGHR---KKKSGAKD--------GKDDECGKVYECRFCSLKFCKSQA 66
K L E SS A GHR KK + D K + + C C ++F QA
Sbjct: 40 KTCLKEFSSFQALGGHRASHKKLINSSDPSLLGSLSNKKTKTATSHPCPICGVEFPMGQA 99
Query: 67 LGGHMNRHRQER 78
LGGHM RHR E+
Sbjct: 100 LGGHMRRHRSEK 111
>sp|Q42453|ZAT7_ARATH Zinc finger protein ZAT7 OS=Arabidopsis thaliana GN=ZAT7 PE=2 SV=1
Length = 168
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 54 CRFCSLKFCKSQALGGHMNRHRQERETETL 83
C C +KF QALGGHM RHR E+ + +L
Sbjct: 88 CPICGVKFPMGQALGGHMRRHRNEKVSGSL 117
>sp|Q9SLD4|ZAT11_ARATH Zinc finger protein ZAT11 OS=Arabidopsis thaliana GN=ZAT11 PE=2
SV=1
Length = 178
Score = 35.0 bits (79), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 28 GAGAGHRKKKSGA--KDGK----DDECGKVYECRFCSLKFCKSQALGGHMNRHRQERETE 81
G A H+K K KD K D + ++C CS F QALGGHM RHR E
Sbjct: 64 GHRASHKKPKLTVEQKDVKHLSNDYKGNHFHKCSICSQSFGTGQALGGHMRRHRSSMTVE 123
>sp|Q9M202|ZAT9_ARATH Zinc finger protein ZAT9 OS=Arabidopsis thaliana GN=ZAT9 PE=2 SV=1
Length = 288
Score = 32.0 bits (71), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 52 YECRFCSLKFCKSQALGGHMNRHRQERETETLNKARQLVFQHNDNLAVQGPPPH 105
Y+C C F QALGGH H++ R + NK Q DN+ V H
Sbjct: 173 YKCETCGKVFKSYQALGGHRASHKKNRVSN--NKTEQRSETEYDNVVVVAKRIH 224
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 52 YECRFCSLKFCKSQALGGHMNRH 74
Y+CR C F +ALGGHM H
Sbjct: 4 YKCRVCFKSFVNGKALGGHMRSH 26
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,650,831
Number of Sequences: 539616
Number of extensions: 6231556
Number of successful extensions: 50300
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 867
Number of HSP's that attempted gapping in prelim test: 37277
Number of HSP's gapped (non-prelim): 8231
length of query: 286
length of database: 191,569,459
effective HSP length: 116
effective length of query: 170
effective length of database: 128,974,003
effective search space: 21925580510
effective search space used: 21925580510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)