Query 040648
Match_columns 539
No_of_seqs 232 out of 425
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2381 Phosphatidylinositol 4 100.0 1.6E-70 3.4E-75 550.9 10.6 281 76-369 2-285 (286)
2 TIGR03843 conserved hypothetic 100.0 4.3E-47 9.2E-52 373.6 16.0 194 90-328 11-236 (253)
3 PF00454 PI3_PI4_kinase: Phosp 99.2 1.6E-13 3.4E-18 131.8 -9.2 167 141-325 27-222 (235)
4 KOG3829 Uncharacterized conser 98.0 2.6E-05 5.6E-10 83.3 10.1 168 73-264 151-389 (486)
5 PF06702 DUF1193: Protein of u 96.5 0.0037 7.9E-08 62.6 5.2 96 217-318 90-194 (221)
6 PF07804 HipA_C: HipA-like C-t 95.8 0.0046 1E-07 51.4 1.6 39 215-256 39-77 (79)
7 cd00895 PI3Kc_C2_beta Phosphoi 92.3 0.12 2.6E-06 55.1 3.5 66 218-292 194-259 (354)
8 PF09192 Act-Frag_cataly: Acti 90.3 0.21 4.6E-06 51.7 2.9 134 94-262 38-209 (275)
9 cd05177 PI3Kc_C2_gamma Phospho 89.8 0.26 5.6E-06 52.6 3.2 40 219-264 195-234 (354)
10 cd00893 PI4Kc_III Phosphoinosi 88.4 0.17 3.6E-06 52.5 0.6 41 218-264 130-170 (289)
11 cd05168 PI4Kc_III_beta Phospho 88.4 0.32 6.9E-06 50.6 2.6 41 218-264 132-172 (293)
12 cd00894 PI3Kc_IB_gamma Phospho 86.2 0.31 6.7E-06 52.3 1.1 39 220-264 205-243 (365)
13 cd05165 PI3Kc_I Phosphoinositi 85.5 0.29 6.4E-06 52.4 0.5 40 219-264 204-243 (366)
14 cd05175 PI3Kc_IA_alpha Phospho 85.1 0.35 7.5E-06 51.9 0.8 40 219-264 203-242 (366)
15 cd05174 PI3Kc_IA_delta Phospho 85.1 0.35 7.6E-06 51.8 0.8 39 220-264 201-239 (361)
16 cd05176 PI3Kc_C2_alpha Phospho 84.4 0.93 2E-05 48.5 3.6 41 218-264 193-233 (353)
17 KOG0903 Phosphatidylinositol 4 84.3 1.5 3.2E-05 51.1 5.3 114 221-347 689-809 (847)
18 cd00891 PI3Kc Phosphoinositide 84.1 0.39 8.4E-06 51.1 0.6 65 219-295 195-262 (352)
19 cd00896 PI3Kc_III Phosphoinosi 83.7 0.42 9.1E-06 50.8 0.7 41 218-264 193-233 (350)
20 cd05167 PI4Kc_III_alpha Phosph 83.5 0.42 9.2E-06 50.1 0.6 67 219-295 152-218 (311)
21 cd05173 PI3Kc_IA_beta Phosphoi 83.4 0.42 9E-06 51.2 0.5 40 219-264 200-239 (362)
22 cd05166 PI3Kc_II Phosphoinosit 83.4 0.95 2.1E-05 48.3 3.2 40 219-264 194-233 (353)
23 cd05169 PIKKc_TOR TOR (Target 83.0 0.66 1.4E-05 47.2 1.8 82 217-319 171-254 (280)
24 PTZ00303 phosphatidylinositol 81.6 0.65 1.4E-05 54.1 1.2 42 217-264 1135-1176(1374)
25 smart00146 PI3Kc Phosphoinosit 80.3 0.88 1.9E-05 44.1 1.4 42 217-264 91-132 (202)
26 KOG0892 Protein kinase ATM/Tel 79.2 0.94 2E-05 58.4 1.6 121 218-365 2616-2791(2806)
27 COG0661 AarF Predicted unusual 78.7 4.9 0.00011 45.1 6.8 93 227-338 284-376 (517)
28 KOG0902 Phosphatidylinositol 4 77.7 0.95 2.1E-05 55.7 1.0 41 218-264 1643-1683(1803)
29 cd05172 PIKKc_DNA-PK DNA-depen 77.6 1.6 3.6E-05 43.7 2.5 42 218-264 127-168 (235)
30 cd00892 PIKKc_ATR ATR (Ataxia 76.6 1.3 2.8E-05 44.4 1.5 42 218-264 130-171 (237)
31 cd05171 PIKKc_ATM Ataxia telan 76.4 1.4 3.1E-05 45.1 1.7 43 217-264 171-213 (279)
32 cd00142 PI3Kc_like Phosphoinos 75.0 1.6 3.5E-05 42.9 1.6 66 218-294 119-185 (219)
33 cd05124 AFK Actin-Fragmin Kina 74.7 4 8.8E-05 41.8 4.3 108 149-258 34-172 (238)
34 KOG0906 Phosphatidylinositol 3 72.9 2.8 6.1E-05 48.4 3.0 120 217-367 684-803 (843)
35 PRK09775 putative DNA-binding 71.5 2.6 5.7E-05 46.2 2.4 39 216-256 327-365 (442)
36 cd05164 PIKKc Phosphoinositide 69.8 2.3 5E-05 42.2 1.4 42 218-264 122-163 (222)
37 cd05170 PIKKc_SMG1 Suppressor 68.1 2.8 6.1E-05 43.6 1.6 43 217-264 199-241 (307)
38 KOG0904 Phosphatidylinositol 3 66.6 4.1 8.8E-05 48.4 2.6 37 222-264 918-954 (1076)
39 KOG1235 Predicted unusual prot 64.8 5 0.00011 45.3 2.9 40 223-264 316-355 (538)
40 KOG0905 Phosphoinositide 3-kin 63.7 4.8 0.0001 49.2 2.6 38 221-264 1190-1227(1639)
41 cd05163 TRRAP TRansformation/t 49.3 9.1 0.0002 38.9 1.5 42 218-264 145-186 (253)
42 PF15051 FAM198: FAM198 protei 47.9 42 0.00091 36.0 6.1 29 147-175 74-103 (326)
43 KOG0608 Warts/lats-like serine 47.2 17 0.00037 42.7 3.3 44 216-270 742-787 (1034)
44 cd05151 ChoK Choline Kinase (C 46.1 1.7E+02 0.0037 25.9 9.0 64 194-264 67-137 (170)
45 PRK04750 ubiB putative ubiquin 42.5 41 0.00089 38.1 5.4 65 224-309 276-347 (537)
46 COG5032 TEL1 Phosphatidylinosi 42.5 13 0.00028 48.2 1.7 44 216-264 1931-1974(2105)
47 PF07805 HipA_N: HipA-like N-t 41.5 29 0.00063 28.8 3.1 66 84-174 3-69 (81)
48 PF04001 Vhr1: Transcription f 31.2 33 0.00071 30.7 1.9 43 326-368 43-85 (95)
49 TIGR00315 cdhB CO dehydrogenas 30.7 43 0.00093 32.4 2.8 32 481-512 127-158 (162)
50 PHA02537 M terminase endonucle 29.4 14 0.0003 37.7 -0.8 45 250-294 104-157 (230)
51 PF15463 ECM11: Extracellular 26.9 67 0.0014 30.0 3.3 31 496-526 64-98 (139)
52 PRK00945 acetyl-CoA decarbonyl 25.6 71 0.0015 31.3 3.3 37 479-515 133-169 (171)
53 PF13625 Helicase_C_3: Helicas 25.1 68 0.0015 29.0 2.9 56 311-368 33-88 (129)
54 PF08671 SinI: Anti-repressor 23.3 93 0.002 22.6 2.7 23 322-344 6-28 (30)
55 PF08069 Ribosomal_S13_N: Ribo 23.0 41 0.00089 28.0 1.0 22 320-342 33-54 (60)
56 cd07261 Glo_EDI_BRP_like_11 Th 22.0 2.2E+02 0.0048 23.6 5.3 33 80-112 79-113 (114)
57 PF04639 Baculo_E56: Baculovir 22.0 92 0.002 33.2 3.5 39 58-106 114-154 (305)
58 cd07244 FosA FosA, a Fosfomyci 21.8 2.7E+02 0.0058 23.7 5.8 40 73-112 69-108 (121)
59 PRK10188 DNA-binding transcrip 20.6 3.1E+02 0.0067 27.5 6.8 102 251-367 110-222 (240)
60 PF09278 MerR-DNA-bind: MerR, 20.1 92 0.002 24.4 2.4 22 323-344 5-26 (65)
No 1
>KOG2381 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-70 Score=550.92 Aligned_cols=281 Identities=45% Similarity=0.690 Sum_probs=261.6
Q ss_pred HHHHHHHHcCCCCccccCCCceEEEEEccCCCEEEEEecCCCCCcccCCCCCCCCCcCCCCCCccccccCcchhh-hHHH
Q 040648 76 VEVAIALASGVKPIPVSSGLGGAYLLPGRNGDVIAVAKPIDEEPLAFNNPKGFGGLMLGQPGVKRSVRVGETGIR-ELAA 154 (539)
Q Consensus 76 ~~v~~ai~~Gi~P~~i~~GSgGSYfv~~~~G~~vaVFKP~DEEP~a~nNPkG~~~~~~g~~g~~rg~lvge~a~R-EVAA 154 (539)
.++..|++.|+.|++++.|++|+|||++..|..++||||+|||||+.+||+|......|+||+++||++||+++| |+||
T Consensus 2 ~~~~~a~~~g~~p~~~~~g~~gayf~~~~~~~~~~v~kP~deEp~~~~Npk~~~~~~~g~~~~~~~~~v~~~g~~~E~aa 81 (286)
T KOG2381|consen 2 REAIEAIEKGIFPELLPLGSGGAYFMQDTSGWIVGVFKPKDEEPYARNNPKGTKVLQRGQCGCKRSCLVGNSGYRSEAAA 81 (286)
T ss_pred chHHHHhhcCCCcccccCCCchhHHHhccccceeeccCCCcccccccCCCccCchhhccccccccceeccCccccchhhh
Confidence 578899999999999999999999999999999999999999999999999988888999999999999999987 9999
Q ss_pred HhhccCCCCCCCCeeEEEeecccccccccccC--CCCCCCceeEeecccccCCcCCcCCCcchhhhhhhhhhcceeeecC
Q 040648 155 YLLDHDGFAGVPPTALVKISDVGFNVNDTAAN--STAPYKIASLQRFVEHEFDSGELGSSSFSVASIHRIGIFDVRILNL 232 (539)
Q Consensus 155 YLLD~~Gf~~VPpT~lV~l~hp~Fny~~g~~~--~~~p~KiGSlQ~FV~~~~~a~d~gp~~Fpv~evHKIaILDirI~Nt 232 (539)
|||||++|+.||+|.+|+++|++|||+++... .....|+||+|+||++ .++.|+++.+|++.++|||+||||||+||
T Consensus 82 yLlD~~~~~~Vp~t~~v~i~~~~f~~~~~~~~~~~~~~~k~gs~q~Fve~-~~~~d~~~~~F~~~e~hkivvlD~ri~Nt 160 (286)
T KOG2381|consen 82 YLLDHPEFNDVPRTALVKITHFTFNYNAAFLSKRQGKKSKIGSLQLFVEG-YSAADYGLRRFEAEEVHKIVVLDIRIRNT 160 (286)
T ss_pred hccCccccCCCCceeeEEEeeecccccccceecccccccchhhHHHhhcC-ccccceeEEeccccccceeEEEEEEeecc
Confidence 99999999999999999999999999998532 2334799999999999 77889999999999999999999999999
Q ss_pred CCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHhcCChHHhHHHHHhcCCCChH
Q 040648 233 DRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYICNLDPYRDAEILRTELPTLRE 312 (539)
Q Consensus 233 DRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~sLD~~~D~elLr~~l~~lre 312 (539)
|||+|||||++.+.. ......+|||||||.+|+|+||+|++||||+.|||+++++|| ||+..|+++|| ++.+
T Consensus 161 DRh~~N~lvk~~~~~--~~~~~~~Dhgl~fP~~~~d~~f~W~~~pqa~~pfs~~~~~yi--L~~~~d~~~~r----~l~~ 232 (286)
T KOG2381|consen 161 DRHAGNWLVKKEPTL--EQAAILGDHGLCFPEKHPDEWFEWLYWPQAKIPFSEEIVDYI--LDPLTDCNLLR----ELPE 232 (286)
T ss_pred CCCCCceeEEeccCc--ccccccccCceeCcccCCccccchHHHHhhcccccHHHHhcc--CCcccCHHHHH----HhHH
Confidence 999999999986432 334445599999999999999999999999999999999999 99999999999 5789
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhcccCCCCCCCchHHHHHHHHHHhhcc
Q 040648 313 SSIRVLMLCTIFLKQTAAAGLCLGDIGEMMTREFCGGEEKLSVLETLCAKVKESMMN 369 (539)
Q Consensus 313 eclr~LrisT~~LK~aa~~GLtl~eIg~~m~Re~~~~~e~~S~lE~l~~~A~~~~~~ 369 (539)
+++|+++++|+|||+++++|||+.+||.+|+|+++.+ |.+|.+|.+|...+.+
T Consensus 233 ~~~~~~~~~~~f~k~~~~~~l~~~~~g~~~~re~~~~----~~~~~~~~~~~~~~~~ 285 (286)
T KOG2381|consen 233 DLLRLFKVDTGFLKKAFEKQLSVMRIGILNLREALKD----SKLEQLCVEAKASVVE 285 (286)
T ss_pred HHHHHHhhchhhhHHHHHhCchHhhccceehHHHHhh----CccHHHHHhhhhcccC
Confidence 9999999999999999999999999999999999864 9999999999887754
No 2
>TIGR03843 conserved hypothetical protein. This model represents a protein family largely restricted to the Actinobacteria (high-GC Gram-positives), although it is also found in the Chloroflexi. Distant similarity to the phosphatidylinositol 3- and 4-kinase is suggested by the matching of some members to pfam00454.
Probab=100.00 E-value=4.3e-47 Score=373.64 Aligned_cols=194 Identities=26% Similarity=0.403 Sum_probs=166.0
Q ss_pred cccCCCceEEEEEccCC--CEEEEEecCCCCCcccCCCCCCCCCcCCCCCCccccccCcchhhhHHHHhhcc-CCCCCCC
Q 040648 90 PVSSGLGGAYLLPGRNG--DVIAVAKPIDEEPLAFNNPKGFGGLMLGQPGVKRSVRVGETGIRELAAYLLDH-DGFAGVP 166 (539)
Q Consensus 90 ~i~~GSgGSYfv~~~~G--~~vaVFKP~DEEP~a~nNPkG~~~~~~g~~g~~rg~lvge~a~REVAAYLLD~-~Gf~~VP 166 (539)
+|.++||+||++....| ...|||||+.+|.++|+||.|+ +|.|||||||||+ .||++||
T Consensus 11 ri~~aSN~t~~~~~~~~~~~~~~VYKPv~gErPLWDFpdGt------------------La~REvAAYlvs~~lGw~~VP 72 (253)
T TIGR03843 11 RLVDASNATLLCEVTLGGVSARAVYKPVRGERPLWDFPDGT------------------LAGREVAAYLVSEALGWGLVP 72 (253)
T ss_pred EEccccceeEEEEEecCCeeEEEEECCcCCccccccCCCCc------------------hHHHHHHHHHHHHHhCCCcCC
Confidence 68899999999998744 3689999999999999999987 7999999999995 5999999
Q ss_pred CeeEEEeecccccccccccCCCCCCCceeEeecccccCC--------cCCcCCCcchh------------------hhhh
Q 040648 167 PTALVKISDVGFNVNDTAANSTAPYKIASLQRFVEHEFD--------SGELGSSSFSV------------------ASIH 220 (539)
Q Consensus 167 pT~lV~l~hp~Fny~~g~~~~~~p~KiGSlQ~FV~~~~~--------a~d~gp~~Fpv------------------~evH 220 (539)
+|+++ +| |.|+||+|+||+++.+ ++++++++|++ .++|
T Consensus 73 pTvlr----------DG------P~G~GmvQlwie~~~~~~lv~l~~~~~~~~g~~~v~~~~d~~g~~v~l~h~d~~~l~ 136 (253)
T TIGR03843 73 PTVLR----------DG------PFGPGMVQLWIDPDDDPDLVDLVPAGEVPEGWLPVLRAEDEEGEPVVLVHADHPQLR 136 (253)
T ss_pred Ceeee----------cC------CCCCceEEEeccCCCccchhhcccccccCCccccccccccccCcceeecccccHHHh
Confidence 99997 45 8999999999998754 45677888863 3589
Q ss_pred hhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHhcCChHHhH
Q 040648 221 RIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYICNLDPYRDA 300 (539)
Q Consensus 221 KIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~sLD~~~D~ 300 (539)
||+|||++|+|+|||+||||+.+ +.+|++||||||||. +++|+|++|+|+++|||+++++||++|+.+.+.
T Consensus 137 riaVfDi~inNaDRk~GhiL~~~------dg~l~~IDHGl~f~~---~~klrtvlW~wag~Pls~e~l~~i~~L~~~l~~ 207 (253)
T TIGR03843 137 RMAVFDALVNNADRKGGHVLPGP------DGRVWGVDHGVCFHV---EPKLRTVLWGWAGEPLPAELLADLARLRDDLDG 207 (253)
T ss_pred hhhhheeeeecCCCCCCcEeEcC------CCcEEEecCceecCC---CCcccccccccccCCCCHHHHHHHHHHHHhhcC
Confidence 99999999999999999999987 368999999999998 899999999999999999999999999987753
Q ss_pred ---HHHHhcCCCChHHHHHHHHHHHHHHHHH
Q 040648 301 ---EILRTELPTLRESSIRVLMLCTIFLKQT 328 (539)
Q Consensus 301 ---elLr~~l~~lreeclr~LrisT~~LK~a 328 (539)
+.|..+| -..|...+.+.+..||..+
T Consensus 208 ~l~~~L~~ll--t~~Ei~Al~~R~~~Ll~~~ 236 (253)
T TIGR03843 208 DLGRELAELL--TPEEVAALRRRVDRLLETG 236 (253)
T ss_pred hHHHHHHHhC--CHHHHHHHHHHHHHHHhCC
Confidence 3344444 2556666666777777544
No 3
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=99.18 E-value=1.6e-13 Score=131.84 Aligned_cols=167 Identities=23% Similarity=0.213 Sum_probs=89.0
Q ss_pred ccccCcchhhhHHHHhhccC----CC-CCCCCeeE---------EEeecccccccccc------cCCCCCCCceeEeecc
Q 040648 141 SVRVGETGIRELAAYLLDHD----GF-AGVPPTAL---------VKISDVGFNVNDTA------ANSTAPYKIASLQRFV 200 (539)
Q Consensus 141 g~lvge~a~REVAAYLLD~~----Gf-~~VPpT~l---------V~l~hp~Fny~~g~------~~~~~p~KiGSlQ~FV 200 (539)
.++.++.+.+++.+|.+... |+ ..||.|.- ++..++.+++.... .......+.++.|.|+
T Consensus 27 ~~l~~~~~~~~~~~Y~vipls~~~Glie~v~~~~tl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 106 (235)
T PF00454_consen 27 RILKKEGETREIRTYRVIPLSPNCGLIEWVPNTITLQEIYKTYCVRIGHSNDNPSRKYKAKLFEKQSSKVPKDGLRQYFL 106 (235)
T ss_dssp HHHHHTT---------EEEEETTEEEEE--TTEEEHHHHHHHSTTSSTTTCSC------------------TTHHHHHHH
T ss_pred HHHhcCCCCceEEEeEEEecCCCCceeEEeccccchhHhhccccccccccccccccccccccccccccccccchHHHHHH
Confidence 34455666778999988743 33 25555532 22222222221110 0112356789999999
Q ss_pred cccCCcCCcC-CCcchhhhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCc----ccCCCCCccccc
Q 040648 201 EHEFDSGELG-SSSFSVASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLP----EWLDDPYFEWLH 275 (539)
Q Consensus 201 ~~~~~a~d~g-p~~Fpv~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP----~~l~d~~f~Wl~ 275 (539)
....+++++. ....-+.+++.++|+||++.|.|||.+|||+... .++|++||||+||+ ...+...|+|--
T Consensus 107 ~~~~~~~~~~~~r~~f~~sla~~si~~yilg~gDRh~~Nili~~~-----~g~~~hIDfg~~f~~~~~~~~e~vPFrLT~ 181 (235)
T PF00454_consen 107 KSFPSAEEWFEARKNFTRSLAAYSILDYILGLGDRHPGNILIDKK-----TGELIHIDFGFIFGGKHLPVPETVPFRLTR 181 (235)
T ss_dssp HHSCTTHHHHHHHHHHHHHHHHHHHHHHHHT-CS--TTTEEE-ET-----TSEEEE--HSSCTTHHHGSSSS--SSTTHH
T ss_pred hcCCChhhhHhhhHhhHHHHHHHhhceEEEeecCCCchhheeccc-----cceeeeEEeHHhhhccccCCCCCCCeEeCH
Confidence 9888776554 3333478999999999999999999999999553 69999999999999 223333455544
Q ss_pred cCCCCCCCChhHHHHHhc----CChHHhHHHHHhcCCCChHHHHHHHHHHHHHH
Q 040648 276 WPQASVPFSEPELEYICN----LDPYRDAEILRTELPTLRESSIRVLMLCTIFL 325 (539)
Q Consensus 276 WPqA~~PFS~etl~yI~s----LD~~~D~elLr~~l~~lreeclr~LrisT~~L 325 (539)
+.+.. +++..+...++.....+-..+.+...+.+.+|
T Consensus 182 -------------~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll 222 (235)
T PF00454_consen 182 -------------NMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLL 222 (235)
T ss_dssp -------------HHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred -------------HHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHH
Confidence 33444 48888888888876333333333344444444
No 4
>KOG3829 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.01 E-value=2.6e-05 Score=83.29 Aligned_cols=168 Identities=23% Similarity=0.221 Sum_probs=99.3
Q ss_pred HHHHHHHHHHHcCCCCccccCCCceE---EEEEccCCCEEEEEecCC----CCCcccCCCCCCCCCcCCCCCCccccccC
Q 040648 73 ALVVEVAIALASGVKPIPVSSGLGGA---YLLPGRNGDVIAVAKPID----EEPLAFNNPKGFGGLMLGQPGVKRSVRVG 145 (539)
Q Consensus 73 ~li~~v~~ai~~Gi~P~~i~~GSgGS---Yfv~~~~G~~vaVFKP~D----EEP~a~nNPkG~~~~~~g~~g~~rg~lvg 145 (539)
.++..+..++..--. +.+..+-+|| ..++-+++ .-+||||.. +|-.. + -| .||-|
T Consensus 151 ~~~~alL~~l~~~pI-~~v~v~~~GtqLKlll~~~~~-~KavfKPmR~~Rd~~~~~-~---yf-------s~~dR----- 212 (486)
T KOG3829|consen 151 QSMGALLHALRTEPI-TRVSVLGRGTQLKLLLRLSHQ-QKVVFKPMRYPRDEVIDG-M---YY-------SGFDR----- 212 (486)
T ss_pred hhHHHHHHHhhcCcc-eEEeecCCceEEEEEEEecCC-ceeeeccccCCccccCCC-c---cc-------ccccc-----
Confidence 556666667664321 1455666666 34444444 579999974 32211 1 12 11111
Q ss_pred cchhhhHHHHhhccC-CCCCCCCeeEE--Eeecc-----------cccccccc------c-----------CCCCCCCce
Q 040648 146 ETGIRELAAYLLDHD-GFAGVPPTALV--KISDV-----------GFNVNDTA------A-----------NSTAPYKIA 194 (539)
Q Consensus 146 e~a~REVAAYLLD~~-Gf~~VPpT~lV--~l~hp-----------~Fny~~g~------~-----------~~~~p~KiG 194 (539)
=--||||+=||+- ||..+|||+=+ .++-. +|+.+-+. | ...+..+.|
T Consensus 213 --HnAEiAAFHLDRiL~FrRappvVGRvvNlttEI~~~a~~~LlqtfFvsp~~N~CF~gKC~YyC~t~~avCg~pdmlEG 290 (486)
T KOG3829|consen 213 --HNAEVAAFHLDRVLDFRRAPPVVGRVVNLTTEIYEKAEEELLQTFFVSPAENYCFFGKCDYYCDTEEAVCGDPDMLEG 290 (486)
T ss_pred --cchhhhhhhhhhhhcccccCcccceeeeeehHHHHhhHHHHHhheeeccCcceEEeeccccccCCcccccCCcccccc
Confidence 1359999999985 99999999743 22211 23222111 1 124578899
Q ss_pred eEeecccccCCcCC-cCC-------------------Ccc-------h------hhhhhhhhhcceeeecCCCCCCceEE
Q 040648 195 SLQRFVEHEFDSGE-LGS-------------------SSF-------S------VASIHRIGIFDVRILNLDRHAGNILV 241 (539)
Q Consensus 195 SlQ~FV~~~~~a~d-~gp-------------------~~F-------p------v~evHKIaILDirI~NtDRh~GNiLV 241 (539)
|+|.|+++....-. ..+ ..+ | ..++=.|+||||+|.|.|||.=--.-
T Consensus 291 S~~~fLP~~~~~prk~~r~Pw~RtY~~~k~a~WE~d~~YCd~VK~~~pY~~g~RLlDliD~aIfDyLiGN~DRHHYEtF~ 370 (486)
T KOG3829|consen 291 SLIAFLPDESTLPRKHRRSPWRRTYKKDKKAEWEDDMNYCDKVKSIKPYDEGRRLLDLIDMAIFDYLIGNMDRHHYETFE 370 (486)
T ss_pred eEEEEcCCcccccccccCCccccccccccccccccchHHHHHhcccCccccchhHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 99999987443211 000 000 0 23556899999999999999643222
Q ss_pred eecCCCCCceeEEeecccccCcc
Q 040648 242 KKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 242 ~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
.. ++...++-+|||-+|-.
T Consensus 371 ~f----~d~s~~ihLDngr~FGr 389 (486)
T KOG3829|consen 371 VF----GDLSFLIHLDNGRAFGR 389 (486)
T ss_pred cc----CCcceEEEeccccccCC
Confidence 21 34588999999999975
No 5
>PF06702 DUF1193: Protein of unknown function (DUF1193); InterPro: IPR009581 This family is baesd on the C terminus of several hypothetical eukaryotic proteins of unknown function. Proteins in this entry contain two conserved motifs: DRHHYE and QCC, as well as a number of conserved cysteine residues.
Probab=96.50 E-value=0.0037 Score=62.61 Aligned_cols=96 Identities=25% Similarity=0.323 Sum_probs=58.6
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccc-cccCCCCCCCChhHHHHHhcCC
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEW-LHWPQASVPFSEPELEYICNLD 295 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~W-l~WPqA~~PFS~etl~yI~sLD 295 (539)
.++=.++|||++|.|+|||.-|..-+. ++..-++-+|||-.|-...-| .+.- +.+-|. -=|...|.+.++.|.
T Consensus 90 ldliDm~IFDFLigN~DRhhye~f~~f----gn~~~l~~LDNgrgFG~~~~d-e~sIlaPL~Qc-C~iRrST~~rL~~l~ 163 (221)
T PF06702_consen 90 LDLIDMAIFDFLIGNMDRHHYETFNKF----GNEGFLLHLDNGRGFGRPSHD-ELSILAPLYQC-CRIRRSTWERLQLLS 163 (221)
T ss_pred hHHHHHHHHHHHhcCCcchhhhhhhcc----CCCceEEEEeCCcccCCCCCC-ccchhccHHHh-hhccccHHHHHHHhc
Confidence 455589999999999999999966332 345789999999999432112 1111 111233 345666666666665
Q ss_pred --hHHhHHHHHhc------CCCChHHHHHHH
Q 040648 296 --PYRDAEILRTE------LPTLRESSIRVL 318 (539)
Q Consensus 296 --~~~D~elLr~~------l~~lreeclr~L 318 (539)
...--++||+. .|.|.+.-+..|
T Consensus 164 ~~~~~Ls~~m~~s~~~D~l~PvL~e~Hl~Al 194 (221)
T PF06702_consen 164 KGGYRLSDLMRESLSRDPLAPVLTEPHLEAL 194 (221)
T ss_pred cCCCcHHHHHHHHhccCccCccCcHHHHHHH
Confidence 44444555554 244555555443
No 6
>PF07804 HipA_C: HipA-like C-terminal domain; InterPro: IPR012893 The members of this entry are similar to a region close to the C terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 3AKL_D 3AKJ_B 3AKK_D 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=95.79 E-value=0.0046 Score=51.41 Aligned_cols=39 Identities=31% Similarity=0.354 Sum_probs=28.3
Q ss_pred hhhhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEee
Q 040648 215 SVASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPI 256 (539)
Q Consensus 215 pv~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpI 256 (539)
.+.++-++.+|+++|.|+|||.+||=+-.. +..++|.|+
T Consensus 39 ~~~~l~~~~~fn~ligN~D~H~kN~s~l~~---~~~~~LaP~ 77 (79)
T PF07804_consen 39 DVRELFRRLVFNYLIGNTDRHLKNFSFLYD---GGGWRLAPA 77 (79)
T ss_dssp HHHHHHHHHHHHHHCTBS---CCCSEEEEE---CCEEEE--B
T ss_pred HHHHHHHHHHHHHHHcCCcCCcCCEEEEEc---CCeEEecCC
Confidence 366788999999999999999999988775 346888886
No 7
>cd00895 PI3Kc_C2_beta Phosphoinositide 3-kinase (PI3K), class II, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not
Probab=92.26 E-value=0.12 Score=55.12 Aligned_cols=66 Identities=23% Similarity=0.234 Sum_probs=50.5
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHh
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYIC 292 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~ 292 (539)
..---+|.=|++.=.|||.||||+.. +++++-||=|+.|-. .+++..+....+-.+|++|.++.|.
T Consensus 194 S~AgYsV~tYiLgIgDRHndNImi~~------~GhlfHIDFG~iLg~---~~~~g~~~re~~PF~Lt~emv~vm~ 259 (354)
T cd00895 194 SCAGCCVATYVLGICDRHNDNIMLKT------TGHMFHIDFGRFLGH---AQMFGNIKRDRAPFVFTSDMAYVIN 259 (354)
T ss_pred HHHHHHHHHHHccccccCCCceeEcC------CCCEEEEeeHHhcCC---CcccCCCCcCCCCccccHHHHHHhc
Confidence 34456788899999999999999986 589999999999987 4556655554444556777776663
No 8
>PF09192 Act-Frag_cataly: Actin-fragmin kinase, catalytic; InterPro: IPR015275 This domain assumes a secondary structure consisting of eight beta strands and 11 alpha-helices, organised in two lobes. It is predominantly found in actin-fragmin kinase, it is the catalytic domain that mediates the phosphorylation of actin []. ; PDB: 1CJA_A.
Probab=90.27 E-value=0.21 Score=51.68 Aligned_cols=134 Identities=23% Similarity=0.260 Sum_probs=64.1
Q ss_pred CCceEEEEEccCC--CEEEEEecCCCCCcccCCCCCCCCCcCCCCCCccccccCcchhhhHHHHhhcc-CCCCCCCCeeE
Q 040648 94 GLGGAYLLPGRNG--DVIAVAKPIDEEPLAFNNPKGFGGLMLGQPGVKRSVRVGETGIRELAAYLLDH-DGFAGVPPTAL 170 (539)
Q Consensus 94 GSgGSYfv~~~~G--~~vaVFKP~DEEP~a~nNPkG~~~~~~g~~g~~rg~lvge~a~REVAAYLLD~-~Gf~~VPpT~l 170 (539)
+|||.||+..-+| ..++|.|+..- -..|+=||+|-. .|. -||--++
T Consensus 38 ns~gv~fv~~f~~~~~~avViK~s~t------------------------------~~~E~~~s~La~~Lgv-~~P~~Ri 86 (275)
T PF09192_consen 38 NSGGVFFVATFSGSKEEAVVIKFSST------------------------------IQQEVFASELARWLGV-PTPQMRI 86 (275)
T ss_dssp TTS-EEEEEETTE----EEEEE--TT------------------------------HHHHHHHHHHHHHCT------EEE
T ss_pred CCCCEEEEEEcCCCceEEEEEecCCc------------------------------hHHHHHHHHHHHHhCC-CCCceee
Confidence 4999999997766 35888887521 367888999864 463 3577777
Q ss_pred EEeecccccccccc-c-CC----C--------CCCCceeEeecccccCCcCCcCCC-cch--------hhhhhhhhhcce
Q 040648 171 VKISDVGFNVNDTA-A-NS----T--------APYKIASLQRFVEHEFDSGELGSS-SFS--------VASIHRIGIFDV 227 (539)
Q Consensus 171 V~l~hp~Fny~~g~-~-~~----~--------~p~KiGSlQ~FV~~~~~a~d~gp~-~Fp--------v~evHKIaILDi 227 (539)
++...+-|.--... . .. . +..-.=-+++||++.. ..++... .|. ..++-||-+||+
T Consensus 87 i~~~~~E~~e~~~~l~~a~~~~~~l~~~i~~el~~a~~liMeyv~G~~-L~e~~~~~~f~~~~~~~~~~~~LG~ii~fDi 165 (275)
T PF09192_consen 87 IESSSSEFQEMSEALLFATSNDDELGDFICSELDKAFFLIMEYVPGKP-LNELNHKEYFSPEKSGEKRLEQLGRIIAFDI 165 (275)
T ss_dssp EESSSHHHHHHHHHHH----HH-SSS-HHHHHCT-SEEEEEE---EEE-STT--SS--SHHHHS-HHHHHHHHHHHHHHH
T ss_pred eecCCHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCC-ccccCcccccCCcchHHHHHHHHHhHHhhhh
Confidence 77655443110000 0 00 0 0111123567776422 2233222 232 346779999999
Q ss_pred eeecCCCCC------------CceEEeecCCCCCceeEEeecccccC
Q 040648 228 RILNLDRHA------------GNILVKKHDRHGEAAELVPIDHGLCL 262 (539)
Q Consensus 228 rI~NtDRh~------------GNiLV~~~~~~~~~~~LvpIDHGLcF 262 (539)
.++|.||-. .|||+...+. ...+..||..++-
T Consensus 166 ~inN~DRlP~~~l~W~n~gN~~Nil~~~~p~---~~~~~~i~~~i~~ 209 (275)
T PF09192_consen 166 FINNFDRLPCRILNWRNEGNPSNILFYEKPN---GWYFSLIDSNITC 209 (275)
T ss_dssp HHT--SSS----SSS-S---GGGEEEESB-----TT-EEE-S-----
T ss_pred hhcCcccCcccccccCCCCChhheEEecccc---cceeeeccccccc
Confidence 999999966 5788876422 3678888887764
No 9
>cd05177 PI3Kc_C2_gamma Phosphoinositide 3-kinase (PI3K), class II, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=89.84 E-value=0.26 Score=52.62 Aligned_cols=40 Identities=23% Similarity=0.302 Sum_probs=35.2
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
.--.+|.=|++.=.|||.||||+.. +++++-||-|++|-.
T Consensus 195 ~AgysvvtYiLGigDRHn~NILi~~------~G~~~HIDFG~ilg~ 234 (354)
T cd05177 195 CAGWCVVTFILGVCDRHNDNIMLTH------SGHMFHIDFGKFLGH 234 (354)
T ss_pred HHHHHHHHHHhcccCcCCCceeEcC------CCCEEEEehHHhcCC
Confidence 3467788999999999999999975 589999999999975
No 10
>cd00893 PI4Kc_III Phosphoinositide 4-kinase (PI4K), Type III, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. There are two types of PI4Ks, types II and III. Type II PI4Ks lack the characteristic catalytic kinase domain present in PI3Ks and type III PI4Ks, and are excluded from this family. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes.
Probab=88.45 E-value=0.17 Score=52.53 Aligned_cols=41 Identities=29% Similarity=0.473 Sum_probs=35.7
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..--..|.=|++.=.|||.||||+.. +++++.||-|++|-.
T Consensus 130 SlA~ySvv~YiLgigDRH~~NILid~------~G~liHIDFG~ilg~ 170 (289)
T cd00893 130 SMAGYSLLCYLLQIKDRHNGNILLDS------DGHIIHIDFGFILDS 170 (289)
T ss_pred HHHHHHHHHHHhhccccCCCceEECC------CCCEEEEehHHhhCc
Confidence 34467788899999999999999975 589999999999986
No 11
>cd05168 PI4Kc_III_beta Phosphoinositide 4-kinase (PI4K), Type III, beta isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIbeta (also called Pik1p in yeast) is a 110 kDa protein that is localized to the Golgi and the nucleus. It is required for maintaining the structural integrity of the Golgi complex (GC), and is a key regulator of protein transport from the GC to the plasma membrane. PI4KII
Probab=88.40 E-value=0.32 Score=50.61 Aligned_cols=41 Identities=29% Similarity=0.500 Sum_probs=35.7
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..--..|.=|++.=.|||.+||||.. +++|+.||=|++|-.
T Consensus 132 S~A~ySvv~YvLGigDRH~~NILi~~------~G~liHIDFG~~fg~ 172 (293)
T cd05168 132 SLAGYSLICYLLQIKDRHNGNILIDN------DGHIIHIDFGFMLSN 172 (293)
T ss_pred HHHHHHHHHHHhhccccCCCceEEcC------CCCEEEEehHHhhcc
Confidence 34467788899999999999999986 589999999999976
No 12
>cd00894 PI3Kc_IB_gamma Phosphoinositide 3-kinase (PI3K), class IB, gamma isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=86.22 E-value=0.31 Score=52.25 Aligned_cols=39 Identities=26% Similarity=0.312 Sum_probs=34.3
Q ss_pred hhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 220 HRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 220 HKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
---+|.=|++.=.|||.|||||.. +++|+-||-|++|-.
T Consensus 205 AgYsV~tYiLGIgDRHndNImi~~------~G~lfHIDFG~ilg~ 243 (365)
T cd00894 205 AGYCVATFVLGIGDRHNDNIMITE------TGNLFHIDFGHILGN 243 (365)
T ss_pred HHHHHHHHhccccCccccceeEcC------CCCEEEEeeHHhhCC
Confidence 356778899999999999999985 589999999999964
No 13
>cd05165 PI3Kc_I Phosphoinositide 3-kinase (PI3K), class I, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. In vitro, they can also phosphorylate the substrates P
Probab=85.51 E-value=0.29 Score=52.40 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=34.6
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
.--.+|.=|++.=.|||.||||+.. .++++-||-|++|-.
T Consensus 204 ~AgysvvtYiLGigDRH~~NILi~~------~G~l~HIDFG~ilg~ 243 (366)
T cd05165 204 CAGYCVATFVLGIGDRHNDNIMVKE------TGQLFHIDFGHILGN 243 (366)
T ss_pred HHHHHHHHHHhhccccCCcceEEcC------CCCEEEEehHHhhcc
Confidence 3357788899999999999999986 589999999999943
No 14
>cd05175 PI3Kc_IA_alpha Phosphoinositide 3-kinase (PI3K), class IA, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=85.13 E-value=0.35 Score=51.95 Aligned_cols=40 Identities=30% Similarity=0.321 Sum_probs=34.9
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
.---+|.=|++.=.|||.||||+.. +++|+-||=|++|-.
T Consensus 203 ~AgYsV~tYiLGIgDRHndNImi~~------~G~l~HIDFG~iLg~ 242 (366)
T cd05175 203 CAGYCVATFILGIGDRHNSNIMVKD------DGQLFHIDFGHFLDH 242 (366)
T ss_pred HHHHHHHHHHhcccccCccceeEcC------CCCEEEEehHHhhcC
Confidence 3356788899999999999999986 599999999999965
No 15
>cd05174 PI3Kc_IA_delta Phosphoinositide 3-kinase (PI3K), class IA, delta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and
Probab=85.10 E-value=0.35 Score=51.81 Aligned_cols=39 Identities=26% Similarity=0.349 Sum_probs=34.0
Q ss_pred hhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 220 HRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 220 HKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
--..|.=|++.=.|||.|||||.. .++++-||-|++|-.
T Consensus 201 AgysVvtYiLGIGDRHn~NILi~~------~G~l~HIDFG~ilg~ 239 (361)
T cd05174 201 AGYCVATYVLGIGDRHSDNIMIRE------SGQLFHIDFGHFLGN 239 (361)
T ss_pred HHHHHHHHHhcccCcCccceeEcC------CCCEEEEehHHhhcC
Confidence 356788899999999999999975 589999999999854
No 16
>cd05176 PI3Kc_C2_alpha Phosphoinositide 3-kinase (PI3K), class II, alpha isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do n
Probab=84.39 E-value=0.93 Score=48.53 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=35.6
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..---+|.=|++.=.|||.||||+.. .++++-||=|++|-.
T Consensus 193 S~AgYsv~tYiLGIgDRHn~NILi~~------~Ghl~HIDFG~ilg~ 233 (353)
T cd05176 193 SCAGCCVATYVLGICDRHNDNIMLRS------TGHMFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHHhhhccccCcCCcceEEcC------CCCEEEEeeHHhcCC
Confidence 34467788999999999999999975 589999999999975
No 17
>KOG0903 consensus Phosphatidylinositol 4-kinase, involved in intracellular trafficking and secretion [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.25 E-value=1.5 Score=51.05 Aligned_cols=114 Identities=23% Similarity=0.293 Sum_probs=63.4
Q ss_pred hhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHhcCChHHhH
Q 040648 221 RIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYICNLDPYRDA 300 (539)
Q Consensus 221 KIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~sLD~~~D~ 300 (539)
--.+.=|++-=-|||+||||+.. ++||+-||-|+-+-.+.----|+ -|-.-|+.|.++.+-.||-+.=-
T Consensus 689 gYSLvcYlLQvKDRHNGNILiD~------EGHIIHIDFGFmLsnsPgnvgFE-----sAPFKLT~EylEvmgG~~~d~Fd 757 (847)
T KOG0903|consen 689 GYSLVCYLLQVKDRHNGNILIDE------EGHIIHIDFGFMLSNSPGNVGFE-----SAPFKLTTEYLEVMGGLDSDMFD 757 (847)
T ss_pred HHHHHHHhhhcccccCCceEecC------CCCEEEEeeeeEecCCCCCcccc-----cCchhhHHHHHHHhcCCcHHHHH
Confidence 44567788888999999999976 69999999999887631111122 12233455555555544433211
Q ss_pred ---H-HHHhcCCCChHHHHHHHHHHHHHHHHHHHc---CCCHHHHhhhhhcccC
Q 040648 301 ---E-ILRTELPTLRESSIRVLMLCTIFLKQTAAA---GLCLGDIGEMMTREFC 347 (539)
Q Consensus 301 ---e-lLr~~l~~lreeclr~LrisT~~LK~aa~~---GLtl~eIg~~m~Re~~ 347 (539)
. +|+..+ .+|.-.-|+..++.++= .|-.+ .--...|..+-.|--+
T Consensus 758 yfK~L~l~gf~-a~RKhadrIv~lvEiMq-~~S~~pCF~aG~~Ti~nL~~RFhL 809 (847)
T KOG0903|consen 758 YFKSLMLQGFM-ALRKHADRIVLLVEIMQ-DGSGMPCFRAGERTIQNLRQRFHL 809 (847)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhh-ccCCCcccccChHHHHHHHHHhcc
Confidence 1 222222 34555566666666542 22111 1113556666666644
No 18
>cd00891 PI3Kc Phosphoinositide 3-kinase (PI3K), catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms c
Probab=84.06 E-value=0.39 Score=51.09 Aligned_cols=65 Identities=23% Similarity=0.186 Sum_probs=45.4
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCC-ccccccCCCCCCC--ChhHHHHHhcCC
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPY-FEWLHWPQASVPF--SEPELEYICNLD 295 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~-f~Wl~WPqA~~PF--S~etl~yI~sLD 295 (539)
.--.+|+=|++.=.|||+||||+.. .++++-||-|++|-. .++ +. .-| -..|| +++.++.+...+
T Consensus 195 ~A~ysv~~YiLgigDRH~~NILi~~------~G~~~HIDFG~ilg~---~~~~~~--~~~-E~~PFrLT~~mv~~mGg~~ 262 (352)
T cd00891 195 CAGYCVATYVLGIGDRHNDNIMLTK------TGHLFHIDFGHFLGN---FKKKFG--IKR-ERAPFVLTPDMAYVMGGGD 262 (352)
T ss_pred HHHHHHHHHHccccccCCCceEECC------CCCEEEEehHHhhcc---CCccCC--CCC-CCCCeeecHHHHHHhCCCC
Confidence 3467788999999999999999985 599999999999954 111 11 011 13555 666666666544
No 19
>cd00896 PI3Kc_III Phosphoinositide 3-kinase (PI3K), class III, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class III PI3Ks, also called Vps34 (vacuolar protein sorting 34), contain an N-terminal lipid binding C2 domain, a PI3K homology domain of unknown function, and a C-termin
Probab=83.74 E-value=0.42 Score=50.82 Aligned_cols=41 Identities=29% Similarity=0.329 Sum_probs=35.9
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..--..|.=|++.=.|||.||||+.. .++++.||=|++|-.
T Consensus 193 S~A~ysvv~YiLGigDRH~~NILi~~------~G~~~HIDFG~ilg~ 233 (350)
T cd00896 193 SCAGYCVITYILGVGDRHLDNLLLTK------DGKLFHIDFGYILGR 233 (350)
T ss_pred HHHHHHHHHHHhcccccCCCcEEEcC------CCCEEEEEhHHhhCC
Confidence 44467888999999999999999985 689999999999965
No 20
>cd05167 PI4Kc_III_alpha Phosphoinositide 4-kinase (PI4K), Type III, alpha isoform, catalytic domain; The PI4K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI4Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 4-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) to generate PtdIns(4)P, the major precursor in the synthesis of other phosphoinositides including PtdIns(4,5)P2, PtdIns(3,4)P2, and PtdIns(3,4,5)P3. Two isoforms of type III PI4K, alpha and beta, exist in most eukaryotes. PI4KIIIalpha is a 220 kDa protein found in the plasma membrane and the endoplasmic reticulum (ER). The role of PI4KIIIalpha in the ER remains unclear. In the plasma membrane, it provides PtdIns(4)P, which is then converted by PI5Ks to PtdIns(4,5)P2, an important signaling mole
Probab=83.53 E-value=0.42 Score=50.15 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=45.2
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHhcCC
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYICNLD 295 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~sLD 295 (539)
.---+|.=|++.=.|||.||||+.. +++++-||=|++|-. +|. .++.+..+-.-++.+.++.+....
T Consensus 152 ~Agysv~tYiLgigDRHn~NILid~------~G~l~HIDFG~il~~---~p~-~~~~~E~~PFkLT~emv~~mGg~~ 218 (311)
T cd05167 152 MAAYSLISYLLQIKDRHNGNIMIDD------DGHIIHIDFGFIFEI---SPG-GNLKFESAPFKLTKEMVQIMGGSM 218 (311)
T ss_pred HHHHHHHHHHhhccccCccceEEcC------CCCEEEEeeHHhhcc---CCC-CCCCcCCCCEeecHHHHHHhCCCC
Confidence 3456778889999999999999986 589999999999965 221 112222222234666666555443
No 21
>cd05173 PI3Kc_IA_beta Phosphoinositide 3-kinase (PI3K), class IA, beta isoform, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class I PI3Ks are the only enzymes capable of converting PtdIns(4,5)P2 to the critical second messenger PtdIns(3,4,5)P3. Class I enzymes are heterodimers and exist in multiple isoforms consisting of one catalytic subunit (out of four isoforms) and one of several regulatory subunits. They are further classified into class IA (alpha, beta and de
Probab=83.44 E-value=0.42 Score=51.22 Aligned_cols=40 Identities=30% Similarity=0.336 Sum_probs=34.4
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
.--.+|.=|++.=.|||.||||+.. .++++-||=|++|-.
T Consensus 200 ~AgYsvvtYILGIGDRHn~NILi~~------~G~l~HIDFG~ilg~ 239 (362)
T cd05173 200 CAGYCVATYVLGIGDRHSDNIMVRK------NGQLFHIDFGHILGN 239 (362)
T ss_pred HHHHHHHHHHhhccccCCCceEECC------CCCEEEEehHHhhcc
Confidence 3356788899999999999999975 699999999999954
No 22
>cd05166 PI3Kc_II Phosphoinositide 3-kinase (PI3K), class II, catalytic domain; The PI3K catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They can be divided into three main classes (I, II, and III), defined by their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PtdIns as a substrate to produce PtdIns(3)P, but can also phosphorylate PtdIns(4)P. They function as monomers and do not associate with any
Probab=83.35 E-value=0.95 Score=48.30 Aligned_cols=40 Identities=25% Similarity=0.298 Sum_probs=35.0
Q ss_pred hhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 219 IHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 219 vHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
.--.+|.=|++.=.|||.||||+.. .++++-||-|++|-.
T Consensus 194 ~A~ysvv~YiLgigDRH~~NILl~~------~G~l~HIDFG~~lg~ 233 (353)
T cd05166 194 CAGCCVATYVLGICDRHNDNIMLTK------SGHMFHIDFGKFLGH 233 (353)
T ss_pred HHHHHHHHHHhhccccCCCceEECC------CCCEEEEeeHHhccc
Confidence 3467788899999999999999985 589999999999964
No 23
>cd05169 PIKKc_TOR TOR (Target of rapamycin), catalytic domain; The TOR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TOR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). TOR contains a rapamycin binding domain, a catalytic domain, and a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. It is also called FRAP (FK506 binding protein 12-rapamycin associated protein). TOR is a central component of the eukaryotic growth regulatory network. It controls the expression of many genes transcribed by all three RNA polymerases. It associates with
Probab=83.02 E-value=0.66 Score=47.17 Aligned_cols=82 Identities=21% Similarity=0.276 Sum_probs=53.9
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCC--ChhHHHHHhcC
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPF--SEPELEYICNL 294 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PF--S~etl~yI~sL 294 (539)
...--..++=|++.=.|||.+|||+... .++++.||-|.+|-.. ..+ +..|. ..|| +++..+.+...
T Consensus 171 ~S~A~~Sv~~YilglgDRH~~NIll~~~-----tG~v~HIDfg~~f~~~---~~~--~~~pE-~VPFRLT~~~~~~lG~~ 239 (280)
T cd05169 171 RSLAVMSMVGYILGLGDRHPSNIMIDRL-----TGKVIHIDFGDCFEVA---MHR--EKFPE-KVPFRLTRMLVNALGVS 239 (280)
T ss_pred HHHHHHHHHHhheeccCCCcceEEEEcC-----CCCEEEEecHHHHhhc---ccc--CCCCC-cCCcccCHHHHHHhCCC
Confidence 3455788899999999999999999985 6899999999998431 000 00121 2454 66666666544
Q ss_pred ChHHhHHHHHhcCCCChHHHHHHHH
Q 040648 295 DPYRDAEILRTELPTLRESSIRVLM 319 (539)
Q Consensus 295 D~~~D~elLr~~l~~lreeclr~Lr 319 (539)
..+ + ..+..|..+|+
T Consensus 240 g~~---------G-~F~~~~~~~~~ 254 (280)
T cd05169 240 GIE---------G-TFRTTCEDVMN 254 (280)
T ss_pred CCC---------C-chHHHHHHHHH
Confidence 332 2 25666666655
No 24
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=81.61 E-value=0.65 Score=54.14 Aligned_cols=42 Identities=29% Similarity=0.382 Sum_probs=36.0
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
...---.|+-|++.=.|||.|||||.. +++|+-||-|+.|-.
T Consensus 1135 ~S~AGYsViTYILgIgDRHngNILId~------dGhLfHIDFGFILg~ 1176 (1374)
T PTZ00303 1135 ASAKLFLLLNYIFSIGDRHKGNVLIGT------NGALLHIDFRFIFSE 1176 (1374)
T ss_pred HHHHHHHHHHHHhccCcccCCceeEcC------CCCEEEEecceeecC
Confidence 344456788899999999999999988 599999999999885
No 25
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=80.25 E-value=0.88 Score=44.15 Aligned_cols=42 Identities=29% Similarity=0.360 Sum_probs=36.8
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
...--..++-|++.=.|||.+|||+.+ .++++-||=|++|-.
T Consensus 91 ~SlA~~s~~~YilglgDRh~~NIli~~------~G~v~hIDfg~~~~~ 132 (202)
T smart00146 91 RSCAGYSVITYILGLGDRHNDNIMLDK------TGHLFHIDFGFILGN 132 (202)
T ss_pred HHHHHHHHHHHHhcCCCCCCCcEEEeC------CCCEEEEechhhhCc
Confidence 344578899999999999999999984 589999999999976
No 26
>KOG0892 consensus Protein kinase ATM/Tel1, involved in telomere length regulation and DNA repair [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.20 E-value=0.94 Score=58.38 Aligned_cols=121 Identities=22% Similarity=0.281 Sum_probs=81.6
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCccc--CC----------------------------
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEW--LD---------------------------- 267 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~--l~---------------------------- 267 (539)
.|--=.|+=|+++=.|||+.||||... ..+++-||-|.+|--. +|
T Consensus 2616 svA~sS~VGyILGLGDRH~qNILid~~-----taEviHIDlGiAFEQGkilptPE~VPFRLTRDiVdgmGItGveGvFrR 2690 (2806)
T KOG0892|consen 2616 SVAASSMVGYILGLGDRHGQNILIDQQ-----TAEVIHIDLGIAFEQGKILPTPETVPFRLTRDIVDGMGITGVEGVFRR 2690 (2806)
T ss_pred hHHHHHHHHHHhcccchhhhheeeccc-----ccceEEEeeeeehhcCCcCCCCCcccceeehhhccccCccCchHHHHH
Confidence 344566889999999999999999875 6899999999998531 11
Q ss_pred -------------------------CCCccccccCCCCCCCChhHHHHHhcCChHHhHHHHHhcCCCChHHHHHHHHHHH
Q 040648 268 -------------------------DPYFEWLHWPQASVPFSEPELEYICNLDPYRDAEILRTELPTLRESSIRVLMLCT 322 (539)
Q Consensus 268 -------------------------d~~f~Wl~WPqA~~PFS~etl~yI~sLD~~~D~elLr~~l~~lreeclr~LrisT 322 (539)
||-|.|+.-|--..+--.| +|-+.+- +-....+|.++=|+++
T Consensus 2691 ccE~t~~vlR~~~~~lltileVl~yDPLf~W~msplK~~~~q~~-----------e~~e~~n--~~~~~~~~~~nd~~a~ 2757 (2806)
T KOG0892|consen 2691 CCEFTLEVLRREKESLLTILEVLLYDPLFSWLMSPLKALKKQKE-----------EDEENFN--LSGNITEDASNDRNAV 2757 (2806)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhcchHHHhhcHHHHHHHHHh-----------hcchhcc--cccchhhhhccchHHH
Confidence 2224444444211111111 1222222 3356788888888888
Q ss_pred HHHHHHHHcCCCHHHHhhhhhcccCCCCCCCchHHHHHHHHHH
Q 040648 323 IFLKQTAAAGLCLGDIGEMMTREFCGGEEKLSVLETLCAKVKE 365 (539)
Q Consensus 323 ~~LK~aa~~GLtl~eIg~~m~Re~~~~~e~~S~lE~l~~~A~~ 365 (539)
.-|=++ +.+|--.+-|.|.+= .+..+.||++|.+
T Consensus 2758 r~l~r~-q~kl~g~e~g~~~sV--------e~qv~~LIqqA~d 2791 (2806)
T KOG0892|consen 2758 RALMRA-QRKLDGVEQGTMLSV--------EAQVQELIQQATD 2791 (2806)
T ss_pred HHHHHH-HHHhhhhhccccccH--------HHHHHHHHHHhcC
Confidence 888776 677888888888873 3678889988864
No 27
>COG0661 AarF Predicted unusual protein kinase [General function prediction only]
Probab=78.71 E-value=4.9 Score=45.07 Aligned_cols=93 Identities=25% Similarity=0.206 Sum_probs=64.1
Q ss_pred eeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHhcCChHHhHHHHHhc
Q 040648 227 VRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYICNLDPYRDAEILRTE 306 (539)
Q Consensus 227 irI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~sLD~~~D~elLr~~ 306 (539)
-=+.=+|=|.|||+|.. +++++.||+|+.=+- ++.+++.+ .+.+-.+.+-|...-++.+.+.
T Consensus 284 dgffHaDpHpGNi~v~~------~g~i~~lDfGi~g~l---~~~~r~~l---------~~~~~a~~~rD~~~v~~~~~~~ 345 (517)
T COG0661 284 DGFFHADPHPGNILVRS------DGRIVLLDFGIVGRL---DPKFRRYL---------AELLLAFLNRDYDRVAELHVEL 345 (517)
T ss_pred cCccccCCCccceEEec------CCcEEEEcCcceecC---CHHHHHHH---------HHHHHHHHhhCHHHHHHHHHHh
Confidence 44567999999999998 589999999997765 33222221 3444555666888889999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q 040648 307 LPTLRESSIRVLMLCTIFLKQTAAAGLCLGDI 338 (539)
Q Consensus 307 l~~lreeclr~LrisT~~LK~aa~~GLtl~eI 338 (539)
++.-...+...+......+-.-+ .|..+.+|
T Consensus 346 G~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~ 376 (517)
T COG0661 346 GYVPPDTDRDPLAAAIRAVLEPI-YGKPLEEI 376 (517)
T ss_pred CCCCCccchHHHHHHHHHHHHhh-hCCChhhc
Confidence 87555567777766665554433 55555554
No 28
>KOG0902 consensus Phosphatidylinositol 4-kinase [Signal transduction mechanisms]
Probab=77.68 E-value=0.95 Score=55.67 Aligned_cols=41 Identities=24% Similarity=0.498 Sum_probs=35.5
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..---+|+-|++.=-|||+||||+.. ++|++-||-|+.|-.
T Consensus 1643 S~A~Ysv~s~lLq~KDRHNGNim~Dd------~G~~iHIDFGf~~e~ 1683 (1803)
T KOG0902|consen 1643 SMAGYSVLSYLLQIKDRHNGNIMIDD------QGHIIHIDFGFMFES 1683 (1803)
T ss_pred HHHHHHHHHHHcccccccCCceeEcc------CCCEEEEeeeeEEec
Confidence 34456788999999999999999976 799999999999865
No 29
>cd05172 PIKKc_DNA-PK DNA-dependent protein kinase (DNA-PK), catalytic domain; The DNA-PK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. DNA-PK is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). DNA-PK is comprised of a regulatory subunit, containing the Ku70/80 subunit, and a catalytic subunit, which contains a NUC194 domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. It is part of a multi-component system involved in non-homologous end joining (NHEJ), a process of repairing double st
Probab=77.63 E-value=1.6 Score=43.72 Aligned_cols=42 Identities=29% Similarity=0.294 Sum_probs=37.1
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..--..++=|++.=.|||.+|||+... .++++-||=|.+|-.
T Consensus 127 S~A~~S~~~YilglgDRH~~NIli~~~-----tG~v~HIDfg~~f~~ 168 (235)
T cd05172 127 SLAAMCVSHWILGIGDRHLSNFLVDLE-----TGGLVGIDFGHAFGT 168 (235)
T ss_pred HHHHHHHHhheeeccCCCcccEEEECC-----CCcEEEEeeHhhhcc
Confidence 455788899999999999999999864 689999999999976
No 30
>cd00892 PIKKc_ATR ATR (Ataxia telangiectasia and Rad3-related), catalytic domain; The ATR catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATR is also referred to as Mei-41 (Drosophila), Esr1/Mec1p (Saccharomyces cerevisiae), Rad3 (Schizosaccharomyces pombe), and FRAP-related protein (human). ATR is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATR contains a UME domain of unknown function, a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. Together with its downstream effector kinase, Chk1, ATR plays a central
Probab=76.63 E-value=1.3 Score=44.42 Aligned_cols=42 Identities=21% Similarity=0.289 Sum_probs=36.8
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..--.+++=|++.=.|||.+|||+... .++++-||=|.+|-.
T Consensus 130 SlA~~s~~~YilgigDRh~~NIli~~~-----tG~~~HIDfg~~~~~ 171 (237)
T cd00892 130 STAVMSMVGYILGLGDRHGENILFDSN-----TGDVVHVDFNCLFDK 171 (237)
T ss_pred HHHHHHHHHHHhccCCCCcccEEEEcC-----CCcEEEEehHhhhcc
Confidence 344677889999999999999999985 689999999999976
No 31
>cd05171 PIKKc_ATM Ataxia telangiectasia mutated (ATM), catalytic domain; The ATM catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. ATM is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). ATM contains a FAT (FRAP, ATM and TRRAP) domain, a catalytic domain, and a FATC domain at the C-terminus. ATM is critical in the response to DNA double strand breaks (DSBs) caused by radiation. It is activated at the site of a DSB and phosphorylates key substrates that trigger pathways that regulate DNA repair and cell cycle checkpoints at the G1/S, S phase, and G2/M transi
Probab=76.45 E-value=1.4 Score=45.08 Aligned_cols=43 Identities=35% Similarity=0.466 Sum_probs=37.2
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..+--+.++=|++.=.|||.+|||+... .++++-||-|.+|-.
T Consensus 171 ~S~A~~s~~~yilglgDRh~~NIll~~~-----tG~v~hiDf~~~f~~ 213 (279)
T cd05171 171 RSVATSSIVGYILGLGDRHANNILIDEK-----TAEVVHIDLGIAFEQ 213 (279)
T ss_pred HHHHHHHHHHHhhccCCCCcccEEEEcC-----cCcEEEEechhhhcc
Confidence 3455788899999999999999999875 689999999999964
No 32
>cd00142 PI3Kc_like Phosphoinositide 3-kinase (PI3K)-like family, catalytic domain; The PI3K-like catalytic domain family is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members of the family include PI3K, phosphoinositide 4-kinase (PI4K), PI3K-related protein kinases (PIKKs), and TRansformation/tRanscription domain-Associated Protein (TRRAP). PI3Ks catalyze the transfer of the gamma-phosphoryl group from ATP to the 3-hydroxyl of the inositol ring of D-myo-phosphatidylinositol (PtdIns) or its derivatives, while PI4K catalyze the phosphorylation of the 4-hydroxyl of PtdIns. PIKKs are protein kinases that catalyze the phosphorylation of serine/threonine residues, especially those that are followed by a glutamine. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the
Probab=74.97 E-value=1.6 Score=42.88 Aligned_cols=66 Identities=17% Similarity=0.190 Sum_probs=46.8
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccC-CCCCCCChhHHHHHhcC
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWP-QASVPFSEPELEYICNL 294 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WP-qA~~PFS~etl~yI~sL 294 (539)
..--..++=|++.=.|||.+|||+... .++++-||=|++|-. .+.+.= | ..-.-++++..+.+...
T Consensus 119 SlA~~s~~~YilglgDRh~~NIli~~~-----~G~~~hIDfg~~~~~---~~~~~~---~e~vPFRLT~~~~~~~g~~ 185 (219)
T cd00142 119 SLAGYSVAGYILGIGDRHPDNIMIDLD-----TGKLFHIDFGFIFGK---RKKFLG---RERVPFRLTPDLVNALGTG 185 (219)
T ss_pred HHHHHHHHHHHhccCCCCCccEEEECC-----CCeEEEEeeHHhhCc---CcCCCC---CCCCCEeccHHHHHHhCCc
Confidence 445678899999999999999999985 689999999999965 222110 1 12233466666666554
No 33
>cd05124 AFK Actin-Fragmin Kinase (AFK); catalytic domain. The AFK catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). AFK is found in slime molds, ciliates, and flowering plants. It catalyzes the transfer of the gamma-phosphoryl group from ATP specifically to threonine residues in the actin-fragmin complex. The phosphorylation sites are located at a minor contact site for DNase I and at an actin-actin contact site. Fragmin is an actin-binding protein that functions as a regulator of the microfilament system. It interferes with the growth of F-actin by severing actin filaments and capping their ends. The phosphorylation of the actin-fragmin complex inhibits its nucleation activity and results in calcium-dependent capping activity. Thus, AFK plays a role in regulating ac
Probab=74.65 E-value=4 Score=41.79 Aligned_cols=108 Identities=19% Similarity=0.127 Sum_probs=58.8
Q ss_pred hhhHHHHhhcc-CCCCCCCCeeEEEeecccccccccc--cCC------------CCCCCceeEeecccccCCcCCcC---
Q 040648 149 IRELAAYLLDH-DGFAGVPPTALVKISDVGFNVNDTA--ANS------------TAPYKIASLQRFVEHEFDSGELG--- 210 (539)
Q Consensus 149 ~REVAAYLLD~-~Gf~~VPpT~lV~l~hp~Fny~~g~--~~~------------~~p~KiGSlQ~FV~~~~~a~d~g--- 210 (539)
..|+=+|+|-. .|.. +|.-++++.+.+-|..-... ..+ .+...-=-+++||++..-.+...
T Consensus 34 ~~E~~~~~La~~LgVp-iPq~rvi~~~~~E~~e~~~~L~~a~~~~~~~~~~i~~el~~~~flimeYv~G~~l~~~~~~~~ 112 (238)
T cd05124 34 ASEYFLSKLAKILGLP-IPQMRVLEWNSSEFTEMSENLLKASSEDECLERRITLELEKAYLLIMEYVPGITLFKMTTHRA 112 (238)
T ss_pred HHHHHHHHHHHHhCCC-CCceeeeecCCHHHHHHHHHHHHHHhcchhHHHHHHHHHhhhheeeeeecCCccchhhccccc
Confidence 67888888754 3433 36666666555554321110 000 00111224677777655332221
Q ss_pred CCcch---hhhhhhhhhcceeeecCCC----------CCCceEEeecCCCCCceeEEeecc
Q 040648 211 SSSFS---VASIHRIGIFDVRILNLDR----------HAGNILVKKHDRHGEAAELVPIDH 258 (539)
Q Consensus 211 p~~Fp---v~evHKIaILDirI~NtDR----------h~GNiLV~~~~~~~~~~~LvpIDH 258 (539)
+.... ..++-||-+||+.|+|.|| |..|||++..+. .....+-.||-
T Consensus 113 s~~~~~~~~~~LG~ii~lDi~inN~DRlPl~~~~~~GN~~Nil~~~~~~-~~~~~~~~~d~ 172 (238)
T cd05124 113 SEYKGEERLIQLGKIIALDIFINNSDRLPLAIWRNSGNFDNIILKDIPN-KNGATEDLIDS 172 (238)
T ss_pred cchhhHHHHHHhhhhheeeeeecCCCCCCccccccCCCcceEEEEcccC-cCCCceeeccc
Confidence 11111 3467799999999999998 678899987421 11344555554
No 34
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=72.94 E-value=2.8 Score=48.38 Aligned_cols=120 Identities=19% Similarity=0.146 Sum_probs=69.9
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHHhcCCh
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYICNLDP 296 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI~sLD~ 296 (539)
...---+|.=|++.=.|||.||+|+++ ++++.-||-|+.|-. ||+- += .-.-++.+.++++-.-.-
T Consensus 684 kScaGYsVitYILGvGDRhldNLllT~------dGk~FHiDFgyIlGR---DPKP---~p--p~MkL~kemve~mgg~es 749 (843)
T KOG0906|consen 684 KSCAGYSVITYILGVGDRHLDNLLLTK------DGKLFHIDFGYILGR---DPKP---FP--PPMKLAKEMVEGMGGAES 749 (843)
T ss_pred HhhccceeeeeeecccCCCcCceEEcc------CCcEEEEeeeeeccC---CCCC---CC--CccccCHHHHHHhcccch
Confidence 344456788999999999999999998 589999999999987 6540 00 011233455565554332
Q ss_pred HHhHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhcccCCCCCCCchHHHHHHHHHHhh
Q 040648 297 YRDAEILRTELPTLRESSIRVLMLCTIFLKQTAAAGLCLGDIGEMMTREFCGGEEKLSVLETLCAKVKESM 367 (539)
Q Consensus 297 ~~D~elLr~~l~~lreeclr~LrisT~~LK~aa~~GLtl~eIg~~m~Re~~~~~e~~S~lE~l~~~A~~~~ 367 (539)
..=-+.+... -+....||.+..++ |+|+.| |.-.. -+|...+.++.|-++++..
T Consensus 750 ~~Yq~F~s~c-----~~Af~~LRRssnlI-------lnLf~L---M~~~~--IPDia~dp~k~I~kvqeRf 803 (843)
T KOG0906|consen 750 KQYQEFRSYC-----YEAFLILRRSSNLI-------LNLFSL---MADAN--IPDIAFDPNKAILKVQERF 803 (843)
T ss_pred HHHHHHHHHH-----HHHHHHHHHhccHH-------HHHHHH---HhcCC--CCceeeCcchhhHHHHHHH
Confidence 2222222221 12222333332222 344433 43332 2466778888888887765
No 35
>PRK09775 putative DNA-binding transcriptional regulator; Provisional
Probab=71.53 E-value=2.6 Score=46.22 Aligned_cols=39 Identities=31% Similarity=0.407 Sum_probs=31.2
Q ss_pred hhhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEee
Q 040648 216 VASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPI 256 (539)
Q Consensus 216 v~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpI 256 (539)
+.++.+..+|.++|.|+|.|+.|+=+-..+ ++.++|.|+
T Consensus 327 ~~~~~rr~~fN~LigN~D~H~KN~Sfl~~~--~~~~~LAPa 365 (442)
T PRK09775 327 AQRAELLWAFGRLIANTDMHAGNLSFVLSD--GRPLALAPV 365 (442)
T ss_pred HHHHHHHHHHhHHhcCCCCCccceEEEECC--CCCeeecch
Confidence 345678899999999999999998777642 346888887
No 36
>cd05164 PIKKc Phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily, catalytic domain; The PIKK catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. Members include ATM (Ataxia telangiectasia mutated), ATR (Ataxia telangiectasia and Rad3-related), TOR (Target of rapamycin), SMG-1 (Suppressor of morphogenetic effect on genitalia-1), and DNA-PK (DNA-dependent protein kinase). PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). They show strong preference for phosphorylating serine/threonine residues followed by a glutamine and are also referred to as (S/T)-Q-directed kinases. They all contain a FATC (FRAP, ATM and TRRAP, C-terminal) d
Probab=69.79 E-value=2.3 Score=42.20 Aligned_cols=42 Identities=31% Similarity=0.400 Sum_probs=36.9
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
..--..++=|++.=.|||.+|||+... .++++-||=|.+|-.
T Consensus 122 SlA~~s~~~YvlglgDRh~~NIli~~~-----tG~v~hIDf~~~~~~ 163 (222)
T cd05164 122 STAVMSIVGYILGLGDRHLDNILIDRE-----TGEVVHIDFGCIFEK 163 (222)
T ss_pred HHHHHHHHHHHhccCCCCCceEEEECC-----CCcEEEEccHHhhcc
Confidence 445678899999999999999999985 689999999999976
No 37
>cd05170 PIKKc_SMG1 Suppressor of morphogenetic effect on genitalia-1 (SMG-1), catalytic domain; The SMG-1 catalytic domain subfamily is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. SMG-1 is a member of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily. PIKKs have intrinsic serine/threonine kinase activity and are distinguished from other PKs by their unique catalytic domain, similar to that of lipid PI3K, and their large molecular weight (240-470 kDa). In addition to its catalytic domain, SMG-1 contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain at the C-terminus. SMG-1 plays a critical role in the mRNA surveillance mechanism known as non-sense mediated mRNA decay (NMD). NMD protects the cells from the accumulation of aberrant mRNAs with premature termination codons (PTCs) generated by geno
Probab=68.12 E-value=2.8 Score=43.64 Aligned_cols=43 Identities=28% Similarity=0.410 Sum_probs=37.3
Q ss_pred hhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 217 ASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 217 ~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
...--+.++=|++.=.|||.+|||+... .++++-||=|.||-.
T Consensus 199 ~s~A~~s~~~yilglgDRh~~NIli~~~-----tG~v~hiDf~~~f~~ 241 (307)
T cd05170 199 RSTAVMSMIGYVIGLGDRHLDNVLIDLK-----TGEVVHIDYNVCFEK 241 (307)
T ss_pred HHHHHHHHHHHHccCCCCCCccEEEEcC-----CCcEEEEeeHhhhcc
Confidence 3555788899999999999999999975 689999999999964
No 38
>KOG0904 consensus Phosphatidylinositol 3-kinase catalytic subunit (p110) [Signal transduction mechanisms]
Probab=66.60 E-value=4.1 Score=48.42 Aligned_cols=37 Identities=32% Similarity=0.380 Sum_probs=32.3
Q ss_pred hhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 222 IGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 222 IaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
-+|--|++.=.|||.+||||+. +++|.-||-|=.+-.
T Consensus 918 YcVATyVLGIgDRHsDNIMvke------~GqlFHIDFGHiLGh 954 (1076)
T KOG0904|consen 918 YCVATYVLGIGDRHSDNIMVKE------TGQLFHIDFGHILGH 954 (1076)
T ss_pred ceeeeeeecccccccCceEEec------cCcEEEEEhhhhhcc
Confidence 4566789999999999999998 589999999988765
No 39
>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]
Probab=64.84 E-value=5 Score=45.32 Aligned_cols=40 Identities=38% Similarity=0.588 Sum_probs=33.3
Q ss_pred hhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 223 GIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 223 aILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
=||.-=...+|=|.|||||++.. .++.+++-.|||++---
T Consensus 316 qIf~~GffHaDPHPGNilv~~~~--~~~~~ivllDhGl~~~i 355 (538)
T KOG1235|consen 316 QIFKTGFFHADPHPGNILVRPNP--EGDEEIVLLDHGLYAVI 355 (538)
T ss_pred HHHhcCCccCCCCCCcEEEecCC--CCCccEEEEcccccccc
Confidence 36777789999999999999752 35789999999998665
No 40
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=63.70 E-value=4.8 Score=49.21 Aligned_cols=38 Identities=26% Similarity=0.324 Sum_probs=33.0
Q ss_pred hhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 221 RIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 221 KIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
--+|--|++.=+|||++|||.++ .+|+.-||-|--+-.
T Consensus 1190 G~cVaTYVLGIcDRHNDNIMl~~------sGHmFHIDFGKFLGh 1227 (1639)
T KOG0905|consen 1190 GWCVATYVLGICDRHNDNIMLTK------SGHMFHIDFGKFLGH 1227 (1639)
T ss_pred cceeeeEeeecccccCCceEEec------cCcEEEEehhhhcch
Confidence 34677899999999999999998 589999999977664
No 41
>cd05163 TRRAP TRansformation/tRanscription domain-Associated Protein (TRRAP), pseudokinase domain; The TRRAP catalytic domain is part of a larger superfamily that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and RIO kinases. TRRAP shows some similarity to members of the phosphoinositide 3-kinase-related protein kinase (PIKK) subfamily in that it contains a FATC (FRAP, ATM and TRRAP, C-terminal) domain and has a large molecular weight. Unlike PIKK proteins, however, it contains an inactive PI3K-like pseudokinase domain, which lacks the conserved residues necessary for ATP binding and catalytic activity. TRRAP also contains many motifs that may be critical for protein-protein interactions. TRRAP is a common component of many histone acetyltransferase (HAT) complexes, and is responsible for the recruitment of these complexes to chromatin during transcription, replicat
Probab=49.34 E-value=9.1 Score=38.91 Aligned_cols=42 Identities=7% Similarity=0.149 Sum_probs=36.1
Q ss_pred hhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 218 SIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 218 evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
+.--+.++=|++.=.|||.+|||+... .++++.||-|.+|-.
T Consensus 145 s~A~~s~~gYilglgdRh~~nili~~~-----tG~v~hiDf~~~f~~ 186 (253)
T cd05163 145 QLALLSFMTYILSINNRNPDKIFISRD-----TGNVYQSDLLPSINN 186 (253)
T ss_pred HHHHHHHHHHHhcCCCCCchhEEEEcC-----CCcEEEEeeeeeecC
Confidence 444688899999999999999999885 689999999988754
No 42
>PF15051 FAM198: FAM198 protein
Probab=47.92 E-value=42 Score=35.95 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=22.5
Q ss_pred chhhhHHHHhhccC-CCCCCCCeeEEEeec
Q 040648 147 TGIRELAAYLLDHD-GFAGVPPTALVKISD 175 (539)
Q Consensus 147 ~a~REVAAYLLD~~-Gf~~VPpT~lV~l~h 175 (539)
.-..||.||=||+- |++.-=|+|-++...
T Consensus 74 ~D~~EVfAFHLDRVLGLNRTLPaVsRkf~~ 103 (326)
T PF15051_consen 74 LDMSEVFAFHLDRVLGLNRTLPAVSRKFEF 103 (326)
T ss_pred CcHHHHHHHHHHHHhcccccchHhHhhhcc
Confidence 44799999999985 888777777776544
No 43
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=47.18 E-value=17 Score=42.65 Aligned_cols=44 Identities=30% Similarity=0.560 Sum_probs=33.7
Q ss_pred hhhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccC--cccCCCCC
Q 040648 216 VASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCL--PEWLDDPY 270 (539)
Q Consensus 216 v~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcF--P~~l~d~~ 270 (539)
++.||||+.+- -|=+.+||||.. ++||---|-|||- .++|..-|
T Consensus 742 iesVHkmGFIH-----RDiKPDNILIDr------dGHIKLTDFGLCTGfRWTHdskY 787 (1034)
T KOG0608|consen 742 IESVHKMGFIH-----RDIKPDNILIDR------DGHIKLTDFGLCTGFRWTHDSKY 787 (1034)
T ss_pred HHHHHhcccee-----cccCccceEEcc------CCceeeeeccccccceecccccc
Confidence 67799999763 577999999987 4788888999994 45554433
No 44
>cd05151 ChoK Choline Kinase (ChoK). The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph
Probab=46.13 E-value=1.7e+02 Score=25.88 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=41.9
Q ss_pred eeEeecccccCCcCC-c-CCCcch-----hhhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 194 ASLQRFVEHEFDSGE-L-GSSSFS-----VASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 194 GSlQ~FV~~~~~a~d-~-gp~~Fp-----v~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
+.+.+||++..-... . .+..+. ...+|.+.+....+.-.|=+.+|||+.. .++.-||-|+|-..
T Consensus 67 ~lv~e~i~G~~l~~~~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~~-------~~~~liDf~~a~~~ 137 (170)
T cd05151 67 VLITEFIEGSELLTEDFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLDD-------GRLWLIDWEYAGMN 137 (170)
T ss_pred eEEEEecCCCccccccccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEEC-------CeEEEEecccccCC
Confidence 578888876432211 0 111111 3456777766777888999999999972 35789999988764
No 45
>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed
Probab=42.54 E-value=41 Score=38.06 Aligned_cols=65 Identities=25% Similarity=0.323 Sum_probs=45.3
Q ss_pred hcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcccCCCCCccccccCCCCCCCChhHHHHH-------hcCCh
Q 040648 224 IFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPEWLDDPYFEWLHWPQASVPFSEPELEYI-------CNLDP 296 (539)
Q Consensus 224 ILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~~l~d~~f~Wl~WPqA~~PFS~etl~yI-------~sLD~ 296 (539)
||.--+.-+|=|.|||||..+. ....+++.||.|++--- +++.++++ ..=|.
T Consensus 276 if~~GffHaDpHPGNIlv~~~g--~~~~~i~llDFGivg~l-------------------~~~~r~~l~~~~~a~~~~D~ 334 (537)
T PRK04750 276 VFRDGFFHADMHPGNIFVSYDP--PENPRYIALDFGIVGSL-------------------NKEDKRYLAENFLAFFNRDY 334 (537)
T ss_pred HHhCCeeeCCCChHHeEEecCC--CCCCeEEEEecceEEEC-------------------CHHHHHHHHHHHHHHHhcCH
Confidence 4567789999999999998741 12458999999997553 44444333 33477
Q ss_pred HHhHHHHHhcCCC
Q 040648 297 YRDAEILRTELPT 309 (539)
Q Consensus 297 ~~D~elLr~~l~~ 309 (539)
..-++.+.+.++.
T Consensus 335 ~~v~~~~~~~g~~ 347 (537)
T PRK04750 335 RRVAELHVESGWV 347 (537)
T ss_pred HHHHHHHHHhCCC
Confidence 7777777777753
No 46
>COG5032 TEL1 Phosphatidylinositol kinase and protein kinases of the PI-3 kinase family [Signal transduction mechanisms / Cell division and chromosome partitioning / Chromatin structure and dynamics / DNA replication, recombination, and repair / Intracellular trafficking and secretion]
Probab=42.53 E-value=13 Score=48.24 Aligned_cols=44 Identities=27% Similarity=0.428 Sum_probs=39.0
Q ss_pred hhhhhhhhhcceeeecCCCCCCceEEeecCCCCCceeEEeecccccCcc
Q 040648 216 VASIHRIGIFDVRILNLDRHAGNILVKKHDRHGEAAELVPIDHGLCLPE 264 (539)
Q Consensus 216 v~evHKIaILDirI~NtDRh~GNiLV~~~~~~~~~~~LvpIDHGLcFP~ 264 (539)
+..+-.+.|.-|+++=.|||+||||+... +++++-||=|.|+-.
T Consensus 1931 ~~SlA~ySvigYiLglgDRH~~NIliD~~-----sG~viHiDFg~il~~ 1974 (2105)
T COG5032 1931 ARSLAVYSVIGYILGLGDRHPGNILIDRS-----SGHVIHIDFGFILFN 1974 (2105)
T ss_pred HHHHHHHHHHHHHccCCCcCCceEEEEcC-----CCcEEEehHHHHHhc
Confidence 34566899999999999999999999885 699999999999876
No 47
>PF07805 HipA_N: HipA-like N-terminal domain; InterPro: IPR012894 The members of this entry contain a region that is found towards the N terminus of the HipA protein expressed by various bacterial species (for example P23874 from SWISSPROT). This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis []. When expressed alone, it is toxic to bacterial cells [], but it is usually tightly associated with HipB [], and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products []. ; PDB: 2WIU_C 3HZI_A 3DNT_B 3FBR_A 3DNU_A 3DNV_A.
Probab=41.51 E-value=29 Score=28.79 Aligned_cols=66 Identities=21% Similarity=0.289 Sum_probs=40.9
Q ss_pred cCCCCccccCCCceEEEEEccCCCEEEEEecCCCCCcccCCCCCCCCCcCCCCCCccccccCcchhhhHHHHhhcc-CCC
Q 040648 84 SGVKPIPVSSGLGGAYLLPGRNGDVIAVAKPIDEEPLAFNNPKGFGGLMLGQPGVKRSVRVGETGIRELAAYLLDH-DGF 162 (539)
Q Consensus 84 ~Gi~P~~i~~GSgGSYfv~~~~G~~vaVFKP~DEEP~a~nNPkG~~~~~~g~~g~~rg~lvge~a~REVAAYLLD~-~Gf 162 (539)
.|..|+++..=.+|.|+.....+..-.|.||..... . +..+..|.+++.|-+ .|+
T Consensus 3 ~G~qpK~~~~~~~~~~~~~~~~~~~~~IvK~~~~~~----~--------------------~~~~~nE~~~~~lA~~~Gi 58 (81)
T PF07805_consen 3 GGAQPKLLLTLDPGRWALPAGDAPSTHIVKFPSSRD----D--------------------PDLVENEYACMRLARAAGI 58 (81)
T ss_dssp -SSSCEEEEEEETTEEEEEETT---SEEEE-S-CEE----E--------------------TTHHHHHHHHHHHHHHTT-
T ss_pred cccceeEEEEEcCCceeecCCCCCceEEEeCCCccc----c--------------------cchHHHHHHHHHHHHHcCC
Confidence 478888777655578888777666788999988761 1 225789999999976 488
Q ss_pred CCCCCeeEEEee
Q 040648 163 AGVPPTALVKIS 174 (539)
Q Consensus 163 ~~VPpT~lV~l~ 174 (539)
-||.|.++.+.
T Consensus 59 -~v~~~~l~~~~ 69 (81)
T PF07805_consen 59 -PVPETRLIRFG 69 (81)
T ss_dssp -----EEEEEET
T ss_pred -CcCceEEEEEC
Confidence 67999998753
No 48
>PF04001 Vhr1: Transcription factor Vhr1; InterPro: IPR007147 This is a family of proteins of unknown function found in yeast.
Probab=31.16 E-value=33 Score=30.73 Aligned_cols=43 Identities=21% Similarity=0.240 Sum_probs=37.7
Q ss_pred HHHHHcCCCHHHHhhhhhcccCCCCCCCchHHHHHHHHHHhhc
Q 040648 326 KQTAAAGLCLGDIGEMMTREFCGGEEKLSVLETLCAKVKESMM 368 (539)
Q Consensus 326 K~aa~~GLtl~eIg~~m~Re~~~~~e~~S~lE~l~~~A~~~~~ 368 (539)
+||.++.-...+|+.|+-=|+--.++-.++.|+||..|+++|-
T Consensus 43 ~KASEQd~~I~~iA~iLR~Ef~Yp~~~~~~FeKLV~aavQSVR 85 (95)
T PF04001_consen 43 RKASEQDDNIRQIAEILRTEFGYPESYSSEFEKLVTAAVQSVR 85 (95)
T ss_pred chhhhhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHH
Confidence 6888899999999999988887666677899999999999984
No 49
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=30.67 E-value=43 Score=32.41 Aligned_cols=32 Identities=9% Similarity=0.281 Sum_probs=27.6
Q ss_pred cccccccccccCCccceeccCChhHHHHHHHH
Q 040648 481 SMSFSVRNCNCEAEGLAFGDMDEGEWEMFLET 512 (539)
Q Consensus 481 s~s~~~~~~~~~~~~~~~~dm~~~ew~~fl~~ 512 (539)
-+..++++-++-.-.+||..|+++||-..|++
T Consensus 127 ~~~i~l~~~y~pnA~~Sf~n~~~~~~~~~l~~ 158 (162)
T TIGR00315 127 IVTIAIDKYYQPNADYSFPNLSKDEYLDYLRK 158 (162)
T ss_pred cEEEEecCCCCCCCceeccccCHHHHHHHHHH
Confidence 45567788889999999999999999999975
No 50
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=29.35 E-value=14 Score=37.68 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=31.8
Q ss_pred ceeEEeecccccCcccCCCCC--------ccccccC-CCCCCCChhHHHHHhcC
Q 040648 250 AAELVPIDHGLCLPEWLDDPY--------FEWLHWP-QASVPFSEPELEYICNL 294 (539)
Q Consensus 250 ~~~LvpIDHGLcFP~~l~d~~--------f~Wl~WP-qA~~PFS~etl~yI~sL 294 (539)
++--++|.||+.+|+.+...+ +.|..=. .++.||.+..+..+..|
T Consensus 104 ~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l 157 (230)
T PHA02537 104 EIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDL 157 (230)
T ss_pred HHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 344578999999999876543 4565554 47889988776665554
No 51
>PF15463 ECM11: Extracellular mutant protein 11
Probab=26.92 E-value=67 Score=29.96 Aligned_cols=31 Identities=32% Similarity=0.607 Sum_probs=24.7
Q ss_pred ceeccCChhHHHH----HHHHHHHHhHHHHHhhhc
Q 040648 496 LAFGDMDEGEWEM----FLETFEVLLPEVIERTKS 526 (539)
Q Consensus 496 ~~~~dm~~~ew~~----fl~~f~~ll~~a~~~~~~ 526 (539)
.-|..||.+||+. ||+.|.+|+..-.+.|..
T Consensus 64 ~~fs~ls~~eWe~~Gd~~l~qf~~l~~kl~~~R~~ 98 (139)
T PF15463_consen 64 EFFSNLSFDEWEEAGDWFLEQFSELMQKLKEARRK 98 (139)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999974 899999998877666543
No 52
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=25.61 E-value=71 Score=31.27 Aligned_cols=37 Identities=8% Similarity=0.240 Sum_probs=30.9
Q ss_pred cccccccccccccCCccceeccCChhHHHHHHHHHHH
Q 040648 479 TRSMSFSVRNCNCEAEGLAFGDMDEGEWEMFLETFEV 515 (539)
Q Consensus 479 ~~s~s~~~~~~~~~~~~~~~~dm~~~ew~~fl~~f~~ 515 (539)
..-+..+++..++-.-.+||+.|+.++|-..|++--+
T Consensus 133 ~~~~~~~~~~~y~~~a~~s~~~~~~~~~~~~l~~li~ 169 (171)
T PRK00945 133 SPLKTITIDRYYHPNADMSFPNLSKEEYLEYLDELID 169 (171)
T ss_pred CCceEEEecCCcCCCCceecCCCCHHHHHHHHHHHHh
Confidence 3356677889999999999999999999999987543
No 53
>PF13625 Helicase_C_3: Helicase conserved C-terminal domain
Probab=25.11 E-value=68 Score=28.97 Aligned_cols=56 Identities=20% Similarity=0.118 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhhhcccCCCCCCCchHHHHHHHHHHhhc
Q 040648 311 RESSIRVLMLCTIFLKQTAAAGLCLGDIGEMMTREFCGGEEKLSVLETLCAKVKESMM 368 (539)
Q Consensus 311 reeclr~LrisT~~LK~aa~~GLtl~eIg~~m~Re~~~~~e~~S~lE~l~~~A~~~~~ 368 (539)
+.+-+.+.|++..=|..|++.|+|..+|-..+.+... ..-|-.++..+.+......
T Consensus 33 s~~~~~~yrlT~~Sl~~A~~~G~~~e~i~~~L~~~S~--~~lP~~v~~~i~~w~~~~g 88 (129)
T PF13625_consen 33 SPDTMHVYRLTPASLWRAASAGLTAEEIIEFLERYSK--NPLPQNVEQSIEDWARRYG 88 (129)
T ss_pred ccCceEEEEECHHHHHHHHHcCCCHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcC
Confidence 4456778999999999999999999999999999874 3568999999988877764
No 54
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=23.28 E-value=93 Score=22.59 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=17.4
Q ss_pred HHHHHHHHHcCCCHHHHhhhhhc
Q 040648 322 TIFLKQTAAAGLCLGDIGEMMTR 344 (539)
Q Consensus 322 T~~LK~aa~~GLtl~eIg~~m~R 344 (539)
..|+|.|...|+|..||-.++.+
T Consensus 6 ~~Li~eA~~~Gls~eeir~FL~~ 28 (30)
T PF08671_consen 6 VELIKEAKESGLSKEEIREFLEF 28 (30)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHh
Confidence 35899999999999999877654
No 55
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=22.98 E-value=41 Score=27.95 Aligned_cols=22 Identities=23% Similarity=0.437 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHcCCCHHHHhhhh
Q 040648 320 LCTIFLKQTAAAGLCLGDIGEMM 342 (539)
Q Consensus 320 isT~~LK~aa~~GLtl~eIg~~m 342 (539)
|..+.+|.| ..|+|+.+||.+|
T Consensus 33 Ve~~I~kla-kkG~tpSqIG~iL 54 (60)
T PF08069_consen 33 VEELIVKLA-KKGLTPSQIGVIL 54 (60)
T ss_dssp HHHHHHHHC-CTTHCHHHHHHHH
T ss_pred HHHHHHHHH-HcCCCHHHhhhhh
Confidence 344455554 7999999999987
No 56
>cd07261 Glo_EDI_BRP_like_11 This conserved domain belongs to a superfamily including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. This protein family belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping.
Probab=22.03 E-value=2.2e+02 Score=23.59 Aligned_cols=33 Identities=24% Similarity=0.302 Sum_probs=21.4
Q ss_pred HHHHcCCC--CccccCCCceEEEEEccCCCEEEEE
Q 040648 80 IALASGVK--PIPVSSGLGGAYLLPGRNGDVIAVA 112 (539)
Q Consensus 80 ~ai~~Gi~--P~~i~~GSgGSYfv~~~~G~~vaVF 112 (539)
.+.+.|+. ..+...+.|-.++++|.+|+.+.||
T Consensus 79 ~~~~~g~~v~~~~~~~~~g~~~~~~DPdGn~ie~~ 113 (114)
T cd07261 79 EWQAKGVKIIQEPTEMDFGYTFVALDPDGHRLRVF 113 (114)
T ss_pred HHHHCCCeEecCccccCCccEEEEECCCCCEEEee
Confidence 44456632 2233345556789999999988886
No 57
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=21.95 E-value=92 Score=33.21 Aligned_cols=39 Identities=28% Similarity=0.429 Sum_probs=30.5
Q ss_pred CceeEeCCCC--cHHHHHHHHHHHHHHHcCCCCccccCCCceEEEEEccCC
Q 040648 58 QRIEIVGGKG--APRVRALVVEVAIALASGVKPIPVSSGLGGAYLLPGRNG 106 (539)
Q Consensus 58 ~~ie~lG~~~--~~~~~~li~~v~~ai~~Gi~P~~i~~GSgGSYfv~~~~G 106 (539)
+.+.++|..- --....||+++..||.. +|||||++..+|
T Consensus 114 G~~~L~G~gvyLv~~~a~LvqdIi~AlNr----------TGGSyy~~G~ng 154 (305)
T PF04639_consen 114 GYVTLLGVGVYLVFSAATLVQDIIDALNR----------TGGSYYYRGNNG 154 (305)
T ss_pred CeEEEEeeEEEEEEEHHHHHHHHHHHHHh----------CCCeeEEEccCC
Confidence 4555666655 45668899999999984 799999998866
No 58
>cd07244 FosA FosA, a Fosfomycin resistance protein, catalyzes the addition of glutathione to the antibiotic fosfomycin, making it inactive. This subfamily family contains FosA, a fosfomycin resistant protein. Fosfomycin inhibits the enzyme UDP-N-acetylglucosamine-3-enolpyruvyltransferase (MurA), which catalyzes the first committed step in bacterial cell wall biosynthesis. FosA, catalyzes the addition of glutathione to the antibiotic fosfomycin, (1R,2S)-epoxypropylphosphonic acid, making it inactive. FosA is a Mn(II) dependent enzyme. It is evolutionarily related to glyoxalase I and type I extradiol dioxygenases.
Probab=21.76 E-value=2.7e+02 Score=23.73 Aligned_cols=40 Identities=13% Similarity=0.195 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHcCCCCccccCCCceEEEEEccCCCEEEEE
Q 040648 73 ALVVEVAIALASGVKPIPVSSGLGGAYLLPGRNGDVIAVA 112 (539)
Q Consensus 73 ~li~~v~~ai~~Gi~P~~i~~GSgGSYfv~~~~G~~vaVF 112 (539)
++-+...+..+.|+..+.-....+-++|++|.+|..+-+|
T Consensus 69 dl~~~~~~l~~~G~~~~~~~~~~~~~~~f~DPdG~~ie~~ 108 (121)
T cd07244 69 DFASLKEKLRQAGVKEWKENTSEGDSFYFLDPDGHKLELH 108 (121)
T ss_pred HHHHHHHHHHHcCCcccCCCCCCccEEEEECCCCCEEEEE
Confidence 3333444556678764433333345788899999988887
No 59
>PRK10188 DNA-binding transcriptional activator SdiA; Provisional
Probab=20.63 E-value=3.1e+02 Score=27.53 Aligned_cols=102 Identities=14% Similarity=0.098 Sum_probs=53.2
Q ss_pred eeEEeecccccCcccCCCCCcc--ccccCC-CCCCCChhHHH-HHhcCChHHhHH--HHHhc-----CCCChHHHHHHHH
Q 040648 251 AELVPIDHGLCLPEWLDDPYFE--WLHWPQ-ASVPFSEPELE-YICNLDPYRDAE--ILRTE-----LPTLRESSIRVLM 319 (539)
Q Consensus 251 ~~LvpIDHGLcFP~~l~d~~f~--Wl~WPq-A~~PFS~etl~-yI~sLD~~~D~e--lLr~~-----l~~lreeclr~Lr 319 (539)
..=++|-||+++|-..+...+. .+.... ...|+...++. .+..+-...-.. .|... ...|++.-..+|+
T Consensus 110 a~~~Gl~~G~t~p~~~~~g~~g~~s~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~LT~rE~evl~ 189 (240)
T PRK10188 110 ARAHGLRRGVTQCLMLPNRALGFLSFSRCSAREIPILSDELELRLQLLVRESLMALMRLEDEMVMTPEMNFSKREKEILK 189 (240)
T ss_pred HHHcCCcceEEEEeecCCCCeEEEEEeccCCcccccchhhHHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCHHHHHHHH
Confidence 3345667899988754544433 222222 13466655543 222111111111 11111 1124444444443
Q ss_pred HHHHHHHHHHHcCCCHHHHhhhhhcccCCCCCCCchHHHHHHHHHHhh
Q 040648 320 LCTIFLKQTAAAGLCLGDIGEMMTREFCGGEEKLSVLETLCAKVKESM 367 (539)
Q Consensus 320 isT~~LK~aa~~GLtl~eIg~~m~Re~~~~~e~~S~lE~l~~~A~~~~ 367 (539)
. ++.|+|-.|||.+|.-. +..++..+..|..-+
T Consensus 190 ~--------~a~G~t~~eIa~~l~is-------~~TV~~h~~~~~~KL 222 (240)
T PRK10188 190 W--------TAEGKTSAEIAMILSIS-------ENTVNFHQKNMQKKF 222 (240)
T ss_pred H--------HHcCCCHHHHHHHhCCC-------HHHHHHHHHHHHHHh
Confidence 3 36999999999999855 466777777776655
No 60
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=20.06 E-value=92 Score=24.44 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=16.5
Q ss_pred HHHHHHHHcCCCHHHHhhhhhc
Q 040648 323 IFLKQTAAAGLCLGDIGEMMTR 344 (539)
Q Consensus 323 ~~LK~aa~~GLtl~eIg~~m~R 344 (539)
.|++.+=+.|+|+.||..++.=
T Consensus 5 ~~I~~~r~lGfsL~eI~~~l~l 26 (65)
T PF09278_consen 5 QFIRRLRELGFSLEEIRELLEL 26 (65)
T ss_dssp HHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHhc
Confidence 4677788899999999999943
Done!