Query 040649
Match_columns 371
No_of_seqs 385 out of 2162
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 10:27:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 1.3E-35 2.8E-40 264.8 20.1 206 20-229 1-206 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 100.0 3.2E-33 6.9E-38 246.7 21.1 196 20-221 1-196 (196)
3 COG1159 Era GTPase [General fu 99.9 4.8E-22 1E-26 179.2 17.6 204 20-256 7-211 (298)
4 TIGR00991 3a0901s02IAP34 GTP-b 99.9 4.2E-21 9.2E-26 176.8 17.6 159 13-176 32-191 (313)
5 TIGR00993 3a0901s04IAP86 chlor 99.9 6.2E-21 1.3E-25 188.4 18.9 162 19-184 118-287 (763)
6 PF02421 FeoB_N: Ferrous iron 99.8 2.1E-20 4.5E-25 156.9 10.9 156 20-204 1-156 (156)
7 cd01853 Toc34_like Toc34-like 99.8 2.4E-19 5.1E-24 163.0 15.2 134 16-153 28-165 (249)
8 COG1160 Predicted GTPases [Gen 99.8 4.6E-19 9.9E-24 168.5 16.7 161 20-208 4-164 (444)
9 PRK00089 era GTPase Era; Revie 99.8 1E-18 2.2E-23 163.6 16.9 180 20-224 6-185 (292)
10 TIGR00436 era GTP-binding prot 99.8 1E-18 2.2E-23 161.8 16.3 177 21-224 2-178 (270)
11 COG0218 Predicted GTPase [Gene 99.8 4.8E-18 1E-22 145.6 18.0 170 18-210 23-198 (200)
12 COG5019 CDC3 Septin family pro 99.8 4.7E-17 1E-21 150.5 23.4 156 18-187 22-206 (373)
13 PRK15494 era GTPase Era; Provi 99.8 4.7E-18 1E-22 161.9 16.5 202 20-256 53-255 (339)
14 cd01897 NOG NOG1 is a nucleola 99.8 2.4E-17 5.2E-22 141.2 17.0 163 20-208 1-167 (168)
15 cd01898 Obg Obg subfamily. Th 99.7 3.1E-17 6.8E-22 140.7 15.0 164 21-207 2-169 (170)
16 PRK12298 obgE GTPase CgtA; Rev 99.7 1E-16 2.2E-21 154.8 19.8 178 21-221 161-344 (390)
17 PF01926 MMR_HSR1: 50S ribosom 99.7 4.5E-17 9.8E-22 131.2 14.6 116 21-146 1-116 (116)
18 cd04164 trmE TrmE (MnmE, ThdF, 99.7 6.2E-17 1.3E-21 136.5 16.0 155 20-208 2-156 (157)
19 PRK00454 engB GTP-binding prot 99.7 2.1E-16 4.5E-21 139.0 20.0 171 18-210 23-195 (196)
20 cd04171 SelB SelB subfamily. 99.7 6.6E-17 1.4E-21 137.5 16.1 157 21-206 2-163 (164)
21 cd04163 Era Era subfamily. Er 99.7 6.4E-17 1.4E-21 137.3 15.8 163 20-207 4-167 (168)
22 cd01895 EngA2 EngA2 subfamily. 99.7 1E-16 2.2E-21 137.3 17.0 172 19-207 2-173 (174)
23 cd01894 EngA1 EngA1 subfamily. 99.7 6.3E-17 1.4E-21 136.5 15.1 155 23-207 1-156 (157)
24 COG1160 Predicted GTPases [Gen 99.7 4.7E-17 1E-21 154.8 15.6 183 18-217 177-359 (444)
25 TIGR03598 GTPase_YsxC ribosome 99.7 1.5E-16 3.3E-21 138.1 16.7 126 17-152 16-144 (179)
26 PRK12299 obgE GTPase CgtA; Rev 99.7 4.4E-16 9.6E-21 147.5 20.6 171 20-211 159-330 (335)
27 PF00009 GTP_EFTU: Elongation 99.7 2E-17 4.3E-22 144.9 10.3 168 18-209 2-187 (188)
28 cd01878 HflX HflX subfamily. 99.7 3.4E-16 7.4E-21 138.7 17.2 164 17-207 39-203 (204)
29 PRK00093 GTP-binding protein D 99.7 6.8E-16 1.5E-20 152.6 21.2 176 18-212 172-347 (435)
30 TIGR03594 GTPase_EngA ribosome 99.7 6.6E-16 1.4E-20 152.4 20.3 178 18-213 171-348 (429)
31 cd00881 GTP_translation_factor 99.7 1.6E-16 3.5E-21 138.3 14.1 165 21-209 1-187 (189)
32 TIGR03594 GTPase_EngA ribosome 99.7 3.6E-16 7.8E-21 154.3 17.8 160 21-210 1-161 (429)
33 KOG2655 Septin family protein 99.7 1.7E-15 3.6E-20 141.5 21.1 157 18-188 20-202 (366)
34 PRK12297 obgE GTPase CgtA; Rev 99.7 7.8E-16 1.7E-20 149.5 19.7 167 21-212 160-330 (424)
35 cd01887 IF2_eIF5B IF2/eIF5B (i 99.7 3.2E-16 6.9E-21 134.0 15.1 163 20-209 1-166 (168)
36 COG0370 FeoB Fe2+ transport sy 99.7 9.6E-16 2.1E-20 152.2 20.5 176 20-225 4-179 (653)
37 TIGR02729 Obg_CgtA Obg family 99.7 8E-16 1.7E-20 145.6 18.9 167 20-208 158-328 (329)
38 PRK12296 obgE GTPase CgtA; Rev 99.7 9E-16 1.9E-20 150.9 19.5 170 20-212 160-343 (500)
39 cd01850 CDC_Septin CDC/Septin. 99.7 5.8E-16 1.3E-20 143.3 17.2 155 19-187 4-186 (276)
40 COG3596 Predicted GTPase [Gene 99.7 1.4E-16 3.1E-21 141.9 12.5 187 17-220 37-233 (296)
41 TIGR03156 GTP_HflX GTP-binding 99.7 6.7E-16 1.5E-20 147.4 17.8 162 18-207 188-350 (351)
42 PRK03003 GTP-binding protein D 99.7 9E-16 2E-20 152.8 18.4 164 18-210 37-200 (472)
43 PRK09866 hypothetical protein; 99.7 6.5E-14 1.4E-18 138.8 30.9 121 69-206 230-350 (741)
44 cd01881 Obg_like The Obg-like 99.7 4.4E-16 9.6E-21 134.1 13.9 162 24-207 1-175 (176)
45 cd04119 RJL RJL (RabJ-Like) su 99.7 1.1E-15 2.3E-20 130.5 16.0 161 20-208 1-166 (168)
46 cd01888 eIF2_gamma eIF2-gamma 99.7 5.3E-16 1.1E-20 137.6 14.3 166 20-210 1-200 (203)
47 COG1084 Predicted GTPase [Gene 99.7 9.3E-16 2E-20 139.9 16.1 131 12-152 161-295 (346)
48 cd04160 Arfrp1 Arfrp1 subfamil 99.7 3.4E-16 7.5E-21 133.9 12.4 161 21-205 1-165 (167)
49 PRK03003 GTP-binding protein D 99.7 2.5E-15 5.4E-20 149.6 20.1 175 18-213 210-386 (472)
50 cd04142 RRP22 RRP22 subfamily. 99.7 2.9E-15 6.3E-20 132.2 18.1 173 20-213 1-178 (198)
51 cd01861 Rab6 Rab6 subfamily. 99.7 2.4E-15 5.2E-20 127.8 16.7 156 21-207 2-160 (161)
52 PRK04213 GTP-binding protein; 99.7 2.3E-15 5.1E-20 133.0 17.3 169 18-211 8-194 (201)
53 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 1.3E-15 2.8E-20 130.4 15.0 161 22-205 2-162 (164)
54 cd01865 Rab3 Rab3 subfamily. 99.7 1.9E-15 4.1E-20 129.3 16.0 160 20-209 2-163 (165)
55 cd01876 YihA_EngB The YihA (En 99.7 3.5E-15 7.6E-20 126.9 17.7 163 22-207 2-169 (170)
56 cd01889 SelB_euk SelB subfamil 99.7 9.3E-16 2E-20 134.7 14.1 166 20-210 1-187 (192)
57 cd01879 FeoB Ferrous iron tran 99.7 1.4E-15 2.9E-20 128.7 14.6 156 24-208 1-156 (158)
58 cd01884 EF_Tu EF-Tu subfamily. 99.7 1.4E-15 3E-20 133.7 14.9 118 19-152 2-133 (195)
59 COG0486 ThdF Predicted GTPase 99.7 1.2E-15 2.7E-20 145.6 15.5 163 17-211 215-378 (454)
60 cd04158 ARD1 ARD1 subfamily. 99.7 1.1E-15 2.3E-20 131.5 13.8 158 21-211 1-163 (169)
61 cd01867 Rab8_Rab10_Rab13_like 99.7 2.7E-15 5.8E-20 128.7 16.2 160 19-209 3-165 (167)
62 smart00175 RAB Rab subfamily o 99.7 3.9E-15 8.5E-20 126.6 17.1 159 20-209 1-162 (164)
63 PRK00093 GTP-binding protein D 99.7 2.1E-15 4.6E-20 149.1 17.7 158 20-206 2-159 (435)
64 PRK09554 feoB ferrous iron tra 99.7 2E-14 4.4E-19 149.4 25.5 164 20-209 4-168 (772)
65 cd04124 RabL2 RabL2 subfamily. 99.7 2.4E-15 5.2E-20 128.2 15.6 157 20-210 1-159 (161)
66 cd01860 Rab5_related Rab5-rela 99.7 3.8E-15 8.3E-20 126.8 16.7 159 20-208 2-162 (163)
67 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.5E-15 7.5E-20 127.6 16.4 159 20-209 3-164 (166)
68 cd04154 Arl2 Arl2 subfamily. 99.7 1.5E-15 3.3E-20 131.0 14.2 155 17-205 12-171 (173)
69 PF00735 Septin: Septin; Inte 99.7 1.3E-15 2.9E-20 140.8 14.7 154 20-187 5-185 (281)
70 PRK05291 trmE tRNA modificatio 99.7 5.9E-15 1.3E-19 145.6 20.2 158 18-210 214-371 (449)
71 cd01866 Rab2 Rab2 subfamily. 99.7 3.5E-15 7.6E-20 128.1 16.3 161 19-209 4-166 (168)
72 cd04113 Rab4 Rab4 subfamily. 99.7 2.4E-15 5.1E-20 127.9 14.9 157 20-206 1-159 (161)
73 cd04122 Rab14 Rab14 subfamily. 99.7 4.2E-15 9E-20 127.3 16.3 156 20-208 3-163 (166)
74 cd04145 M_R_Ras_like M-Ras/R-R 99.7 5.2E-15 1.1E-19 126.0 16.7 159 19-208 2-163 (164)
75 cd01864 Rab19 Rab19 subfamily. 99.7 5E-15 1.1E-19 126.6 16.4 158 19-206 3-163 (165)
76 cd04112 Rab26 Rab26 subfamily. 99.7 5.3E-15 1.1E-19 129.8 16.7 161 21-211 2-165 (191)
77 cd04140 ARHI_like ARHI subfami 99.7 5.5E-15 1.2E-19 126.4 16.3 160 20-207 2-163 (165)
78 cd00877 Ran Ran (Ras-related n 99.7 3.8E-15 8.2E-20 127.7 15.0 156 21-211 2-161 (166)
79 cd01868 Rab11_like Rab11-like. 99.6 5E-15 1.1E-19 126.4 15.7 157 20-207 4-163 (165)
80 PRK09518 bifunctional cytidyla 99.6 4.8E-15 1.1E-19 154.3 18.6 163 19-210 275-437 (712)
81 cd04138 H_N_K_Ras_like H-Ras/N 99.6 8.5E-15 1.9E-19 124.1 16.6 156 20-207 2-160 (162)
82 smart00173 RAS Ras subfamily o 99.6 6.9E-15 1.5E-19 125.4 16.0 158 21-209 2-162 (164)
83 TIGR00450 mnmE_trmE_thdF tRNA 99.6 9.4E-15 2E-19 143.5 18.9 123 18-151 202-324 (442)
84 PRK11058 GTPase HflX; Provisio 99.6 5.6E-15 1.2E-19 144.3 17.0 165 20-210 198-363 (426)
85 cd04121 Rab40 Rab40 subfamily. 99.6 1.7E-14 3.8E-19 126.3 18.2 164 19-214 6-172 (189)
86 cd04108 Rab36_Rab34 Rab34/Rab3 99.6 4.3E-15 9.3E-20 128.0 14.1 161 21-211 2-167 (170)
87 cd04149 Arf6 Arf6 subfamily. 99.6 2.3E-15 5E-20 129.4 12.2 155 19-205 9-166 (168)
88 cd04136 Rap_like Rap-like subf 99.6 8.8E-15 1.9E-19 124.4 15.8 157 20-207 2-161 (163)
89 cd01890 LepA LepA subfamily. 99.6 2.4E-15 5.1E-20 130.2 12.4 159 20-208 1-176 (179)
90 PLN03118 Rab family protein; P 99.6 1.6E-14 3.4E-19 128.9 18.0 166 15-211 10-179 (211)
91 cd04104 p47_IIGP_like p47 (47- 99.6 1.5E-14 3.2E-19 127.7 17.5 172 20-211 2-186 (197)
92 cd04127 Rab27A Rab27a subfamil 99.6 1.8E-14 3.9E-19 124.8 17.7 161 19-208 4-176 (180)
93 cd00154 Rab Rab family. Rab G 99.6 4.8E-15 1E-19 124.7 13.6 154 20-205 1-158 (159)
94 cd04123 Rab21 Rab21 subfamily. 99.6 1.1E-14 2.3E-19 123.5 15.6 158 20-207 1-160 (162)
95 cd00880 Era_like Era (E. coli 99.6 1.3E-14 2.7E-19 121.7 15.9 162 24-207 1-162 (163)
96 PRK09518 bifunctional cytidyla 99.6 1.9E-14 4.2E-19 149.9 20.5 175 18-213 449-625 (712)
97 smart00177 ARF ARF-like small 99.6 6.8E-15 1.5E-19 127.3 14.4 159 19-208 13-173 (175)
98 cd04109 Rab28 Rab28 subfamily. 99.6 1.1E-14 2.4E-19 130.3 16.2 160 21-210 2-167 (215)
99 cd04157 Arl6 Arl6 subfamily. 99.6 3.9E-15 8.4E-20 126.5 12.7 156 21-205 1-160 (162)
100 cd01863 Rab18 Rab18 subfamily. 99.6 9.6E-15 2.1E-19 124.1 15.0 157 20-206 1-159 (161)
101 cd04110 Rab35 Rab35 subfamily. 99.6 1.4E-14 3.1E-19 128.0 16.6 160 19-210 6-168 (199)
102 cd04156 ARLTS1 ARLTS1 subfamil 99.6 3.3E-15 7.1E-20 126.8 12.0 157 21-206 1-159 (160)
103 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.2E-14 2.6E-19 128.6 16.0 161 20-210 1-169 (201)
104 cd01891 TypA_BipA TypA (tyrosi 99.6 1.2E-14 2.6E-19 127.9 15.8 116 20-152 3-132 (194)
105 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 6.5E-15 1.4E-19 128.4 13.9 164 19-209 3-170 (183)
106 cd04106 Rab23_lke Rab23-like s 99.6 1.3E-14 2.7E-19 123.4 15.3 155 21-206 2-160 (162)
107 cd01893 Miro1 Miro1 subfamily. 99.6 5.6E-15 1.2E-19 126.5 13.1 158 21-208 2-163 (166)
108 cd01862 Rab7 Rab7 subfamily. 99.6 1.4E-14 3E-19 124.3 15.5 161 21-210 2-168 (172)
109 cd04166 CysN_ATPS CysN_ATPS su 99.6 5E-15 1.1E-19 131.8 13.0 155 21-199 1-184 (208)
110 cd04120 Rab12 Rab12 subfamily. 99.6 3E-14 6.4E-19 126.0 17.8 159 21-210 2-164 (202)
111 cd04144 Ras2 Ras2 subfamily. 99.6 1.5E-14 3.2E-19 126.8 15.6 160 21-210 1-164 (190)
112 cd04150 Arf1_5_like Arf1-Arf5- 99.6 8E-15 1.7E-19 124.8 13.5 154 21-205 2-157 (159)
113 cd04175 Rap1 Rap1 subgroup. T 99.6 1.7E-14 3.7E-19 123.1 15.6 158 20-208 2-162 (164)
114 cd04125 RabA_like RabA-like su 99.6 1.9E-14 4.2E-19 125.8 16.2 160 20-210 1-163 (188)
115 cd04155 Arl3 Arl3 subfamily. 99.6 6.3E-15 1.4E-19 126.8 12.9 158 18-206 13-172 (173)
116 PRK15467 ethanolamine utilizat 99.6 3.3E-15 7.1E-20 127.1 10.9 144 21-210 3-148 (158)
117 PLN03071 GTP-binding nuclear p 99.6 2.3E-14 5E-19 128.5 16.6 161 17-210 11-173 (219)
118 PTZ00133 ADP-ribosylation fact 99.6 1.1E-14 2.5E-19 126.8 14.0 161 18-209 16-178 (182)
119 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 1E-14 2.3E-19 126.0 13.5 155 19-205 15-172 (174)
120 smart00178 SAR Sar1p-like memb 99.6 5.4E-15 1.2E-19 129.0 11.8 161 18-206 16-182 (184)
121 cd04151 Arl1 Arl1 subfamily. 99.6 5E-15 1.1E-19 125.7 11.2 153 21-206 1-157 (158)
122 cd04132 Rho4_like Rho4-like su 99.6 1.4E-14 3.1E-19 126.4 14.4 162 20-210 1-168 (187)
123 PLN03110 Rab GTPase; Provision 99.6 3.7E-14 8E-19 127.0 17.3 162 18-210 11-175 (216)
124 TIGR00487 IF-2 translation ini 99.6 2E-14 4.3E-19 145.4 17.2 162 18-206 86-247 (587)
125 cd00878 Arf_Arl Arf (ADP-ribos 99.6 1E-14 2.2E-19 123.6 12.8 153 21-205 1-156 (158)
126 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 4.6E-14 1E-18 121.8 17.1 159 20-210 3-165 (172)
127 TIGR02528 EutP ethanolamine ut 99.6 7.8E-15 1.7E-19 122.2 11.8 139 21-205 2-141 (142)
128 cd04101 RabL4 RabL4 (Rab-like4 99.6 4.9E-14 1.1E-18 120.1 17.0 156 20-207 1-162 (164)
129 PRK10512 selenocysteinyl-tRNA- 99.6 1.7E-14 3.6E-19 147.0 16.4 165 21-210 2-167 (614)
130 cd00879 Sar1 Sar1 subfamily. 99.6 9.9E-15 2.1E-19 127.8 12.5 167 18-207 18-189 (190)
131 PLN00223 ADP-ribosylation fact 99.6 2E-14 4.3E-19 125.2 14.2 159 18-209 16-178 (181)
132 cd04118 Rab24 Rab24 subfamily. 99.6 2.6E-14 5.5E-19 125.5 15.1 162 20-210 1-167 (193)
133 KOG1547 Septin CDC10 and relat 99.6 2.6E-14 5.7E-19 124.4 14.6 158 19-190 46-230 (336)
134 smart00174 RHO Rho (Ras homolo 99.6 3E-14 6.5E-19 122.7 15.2 161 22-208 1-171 (174)
135 cd04159 Arl10_like Arl10-like 99.6 8.8E-15 1.9E-19 123.2 11.6 155 22-206 2-158 (159)
136 cd04117 Rab15 Rab15 subfamily. 99.6 4E-14 8.7E-19 120.7 15.7 156 21-207 2-160 (161)
137 PRK05306 infB translation init 99.6 1.6E-14 3.5E-19 149.5 15.6 161 18-206 289-449 (787)
138 PTZ00369 Ras-like protein; Pro 99.6 4.7E-14 1E-18 123.6 16.3 161 19-209 5-167 (189)
139 cd04139 RalA_RalB RalA/RalB su 99.6 5.1E-14 1.1E-18 119.6 16.1 159 21-209 2-162 (164)
140 cd04114 Rab30 Rab30 subfamily. 99.6 3.5E-14 7.5E-19 121.6 14.9 158 19-207 7-167 (169)
141 cd04115 Rab33B_Rab33A Rab33B/R 99.6 7.3E-14 1.6E-18 120.1 16.7 160 20-208 3-168 (170)
142 cd00876 Ras Ras family. The R 99.6 4.3E-14 9.3E-19 119.5 14.8 156 21-207 1-159 (160)
143 cd01896 DRG The developmentall 99.6 3.8E-14 8.2E-19 128.2 15.3 88 21-115 2-89 (233)
144 cd04134 Rho3 Rho3 subfamily. 99.6 4.1E-14 8.9E-19 124.0 15.1 165 20-210 1-175 (189)
145 cd04128 Spg1 Spg1p. Spg1p (se 99.6 6.3E-14 1.4E-18 122.1 16.2 163 20-210 1-167 (182)
146 TIGR00475 selB selenocysteine- 99.6 3.3E-14 7.1E-19 144.4 16.6 161 21-211 2-168 (581)
147 cd04161 Arl2l1_Arl13_like Arl2 99.6 4E-14 8.6E-19 121.5 14.7 157 21-205 1-165 (167)
148 cd04165 GTPBP1_like GTPBP1-lik 99.6 3.2E-14 6.9E-19 127.8 14.5 164 21-207 1-221 (224)
149 cd01874 Cdc42 Cdc42 subfamily. 99.6 7E-14 1.5E-18 121.0 16.2 161 20-207 2-173 (175)
150 cd04111 Rab39 Rab39 subfamily. 99.6 7.9E-14 1.7E-18 124.4 16.9 162 20-210 3-167 (211)
151 cd04148 RGK RGK subfamily. Th 99.6 7.1E-14 1.5E-18 125.6 16.6 161 20-210 1-164 (221)
152 cd00157 Rho Rho (Ras homology) 99.6 2.2E-14 4.8E-19 123.0 12.5 162 20-206 1-170 (171)
153 cd04126 Rab20 Rab20 subfamily. 99.6 9.9E-14 2.2E-18 124.2 16.7 171 20-209 1-190 (220)
154 KOG1423 Ras-like GTPase ERA [C 99.6 6E-14 1.3E-18 126.4 15.2 188 18-211 71-273 (379)
155 PF10662 PduV-EutP: Ethanolami 99.6 1.3E-14 2.8E-19 119.3 9.8 141 20-205 2-142 (143)
156 cd04116 Rab9 Rab9 subfamily. 99.6 1.1E-13 2.5E-18 118.7 16.3 159 18-206 4-168 (170)
157 CHL00189 infB translation init 99.6 3.2E-14 6.8E-19 146.1 14.8 164 18-208 243-409 (742)
158 COG2262 HflX GTPases [General 99.6 3.5E-14 7.7E-19 133.4 13.8 168 17-211 190-358 (411)
159 PLN03108 Rab family protein; P 99.6 1.1E-13 2.5E-18 123.2 16.4 159 19-208 6-167 (210)
160 cd04177 RSR1 RSR1 subgroup. R 99.6 1.3E-13 2.8E-18 118.3 15.9 158 20-207 2-162 (168)
161 cd04176 Rap2 Rap2 subgroup. T 99.6 9.9E-14 2.2E-18 118.1 15.1 157 20-207 2-161 (163)
162 cd04147 Ras_dva Ras-dva subfam 99.6 9.8E-14 2.1E-18 122.5 15.5 160 21-210 1-164 (198)
163 CHL00071 tufA elongation facto 99.6 9.6E-14 2.1E-18 135.8 16.5 140 16-177 9-162 (409)
164 PRK12317 elongation factor 1-a 99.6 3.7E-14 8E-19 139.7 13.5 162 16-199 3-195 (425)
165 cd01871 Rac1_like Rac1-like su 99.6 2E-13 4.2E-18 118.1 16.4 161 20-206 2-172 (174)
166 cd04137 RheB Rheb (Ras Homolog 99.6 1.5E-13 3.3E-18 119.1 15.6 162 20-212 2-166 (180)
167 cd04135 Tc10 TC10 subfamily. 99.5 4.4E-14 9.6E-19 121.6 11.8 163 20-207 1-172 (174)
168 cd04146 RERG_RasL11_like RERG/ 99.5 1.1E-13 2.3E-18 118.3 13.7 159 21-208 1-163 (165)
169 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.5 2.9E-13 6.4E-18 117.8 16.5 164 18-207 4-178 (182)
170 cd01870 RhoA_like RhoA-like su 99.5 4.9E-14 1.1E-18 121.5 11.3 161 20-207 2-173 (175)
171 cd04168 TetM_like Tet(M)-like 99.5 1E-13 2.2E-18 125.6 13.7 136 21-184 1-152 (237)
172 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.5 3.8E-13 8.1E-18 121.2 17.1 167 18-209 12-188 (232)
173 TIGR00231 small_GTP small GTP- 99.5 3.6E-13 7.8E-18 112.7 15.6 153 20-205 2-160 (161)
174 cd01875 RhoG RhoG subfamily. 99.5 3.5E-13 7.6E-18 118.3 16.1 164 20-209 4-177 (191)
175 cd01886 EF-G Elongation factor 99.5 1.7E-13 3.6E-18 126.4 14.6 115 21-152 1-131 (270)
176 PLN03127 Elongation factor Tu; 99.5 1.9E-13 4E-18 134.6 15.7 168 16-209 58-252 (447)
177 cd04131 Rnd Rnd subfamily. Th 99.5 3.3E-13 7.2E-18 117.1 15.6 162 20-207 2-174 (178)
178 PRK12735 elongation factor Tu; 99.5 2.4E-13 5.2E-18 132.5 16.2 165 16-209 9-203 (396)
179 cd01892 Miro2 Miro2 subfamily. 99.5 3.5E-13 7.6E-18 115.9 15.1 161 18-209 3-166 (169)
180 PRK12736 elongation factor Tu; 99.5 3.6E-13 7.8E-18 131.1 16.6 166 16-209 9-201 (394)
181 cd04133 Rop_like Rop subfamily 99.5 5.9E-13 1.3E-17 115.2 16.0 164 20-208 2-172 (176)
182 COG1163 DRG Predicted GTPase [ 99.5 7.6E-14 1.6E-18 127.0 10.7 163 18-209 62-289 (365)
183 cd00882 Ras_like_GTPase Ras-li 99.5 2.3E-13 5E-18 112.6 12.8 151 24-205 1-156 (157)
184 cd04143 Rhes_like Rhes_like su 99.5 3.6E-13 7.7E-18 122.8 14.9 159 21-209 2-171 (247)
185 cd04130 Wrch_1 Wrch-1 subfamil 99.5 4E-13 8.6E-18 115.9 14.4 161 20-205 1-170 (173)
186 cd04169 RF3 RF3 subfamily. Pe 99.5 3.9E-13 8.5E-18 123.9 15.0 116 20-152 3-138 (267)
187 TIGR01394 TypA_BipA GTP-bindin 99.5 5.9E-13 1.3E-17 135.1 16.9 166 20-211 2-193 (594)
188 PRK05124 cysN sulfate adenylyl 99.5 2.6E-13 5.5E-18 134.8 14.0 168 9-199 17-215 (474)
189 KOG0084 GTPase Rab1/YPT1, smal 99.5 9.4E-13 2E-17 111.7 15.3 164 19-213 9-176 (205)
190 KOG0092 GTPase Rab5/YPT51 and 99.5 3.2E-13 6.9E-18 114.1 12.1 163 19-211 5-169 (200)
191 KOG1489 Predicted GTP-binding 99.5 3.6E-13 7.8E-18 122.1 13.2 163 20-206 197-364 (366)
192 PF00025 Arf: ADP-ribosylation 99.5 2.3E-13 5E-18 117.8 11.6 160 17-207 12-174 (175)
193 cd04102 RabL3 RabL3 (Rab-like3 99.5 2E-12 4.3E-17 114.2 17.5 171 20-210 1-198 (202)
194 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.5 1.3E-12 2.8E-17 117.1 16.4 162 20-207 2-174 (222)
195 smart00176 RAN Ran (Ras-relate 99.5 7.7E-13 1.7E-17 116.8 14.5 151 25-210 1-155 (200)
196 TIGR00485 EF-Tu translation el 99.5 7.9E-13 1.7E-17 128.8 15.9 172 16-209 9-201 (394)
197 PF00350 Dynamin_N: Dynamin fa 99.5 1.7E-13 3.6E-18 117.5 9.9 115 22-147 1-168 (168)
198 PRK00049 elongation factor Tu; 99.5 9.3E-13 2E-17 128.2 16.3 171 16-209 9-203 (396)
199 TIGR00491 aIF-2 translation in 99.5 7.2E-13 1.6E-17 134.0 15.5 114 20-151 5-135 (590)
200 PF00071 Ras: Ras family; Int 99.5 6E-13 1.3E-17 113.1 12.8 157 21-208 1-160 (162)
201 cd04170 EF-G_bact Elongation f 99.5 5.1E-13 1.1E-17 123.6 13.2 115 21-152 1-131 (268)
202 TIGR00437 feoB ferrous iron tr 99.5 5.8E-13 1.3E-17 135.4 14.7 154 26-208 1-154 (591)
203 PRK04000 translation initiatio 99.5 1E-12 2.2E-17 128.4 15.9 168 15-210 5-202 (411)
204 cd01883 EF1_alpha Eukaryotic e 99.5 3E-13 6.5E-18 121.3 11.0 151 21-198 1-194 (219)
205 PTZ00132 GTP-binding nuclear p 99.5 2.9E-12 6.3E-17 114.6 17.4 163 17-213 7-172 (215)
206 TIGR01393 lepA GTP-binding pro 99.5 1.1E-12 2.3E-17 133.5 15.9 163 19-211 3-182 (595)
207 TIGR03680 eif2g_arch translati 99.5 1.2E-12 2.7E-17 127.9 15.6 164 18-209 3-196 (406)
208 cd04129 Rho2 Rho2 subfamily. 99.5 8.1E-13 1.8E-17 115.5 12.7 163 20-208 2-172 (187)
209 TIGR00483 EF-1_alpha translati 99.5 7.4E-13 1.6E-17 130.5 13.6 162 16-199 4-197 (426)
210 TIGR02034 CysN sulfate adenyly 99.5 6.4E-13 1.4E-17 129.8 12.9 117 20-152 1-148 (406)
211 smart00053 DYNc Dynamin, GTPas 99.4 2.4E-12 5.2E-17 116.0 15.3 127 19-152 26-207 (240)
212 cd04167 Snu114p Snu114p subfam 99.4 5.4E-13 1.2E-17 119.2 10.8 114 21-150 2-136 (213)
213 COG0536 Obg Predicted GTPase [ 99.4 2E-12 4.2E-17 118.8 14.5 170 21-211 161-335 (369)
214 cd04103 Centaurin_gamma Centau 99.4 2E-12 4.4E-17 109.9 13.7 151 21-206 2-156 (158)
215 PRK05506 bifunctional sulfate 99.4 7.7E-13 1.7E-17 136.3 13.1 160 15-198 20-210 (632)
216 PRK05433 GTP-binding protein L 99.4 1.4E-12 3E-17 132.8 14.7 164 18-211 6-186 (600)
217 PRK10218 GTP-binding protein; 99.4 3.7E-12 7.9E-17 129.3 17.4 117 19-152 5-135 (607)
218 KOG3859 Septins (P-loop GTPase 99.4 1.5E-10 3.2E-15 103.2 24.6 163 19-195 42-227 (406)
219 PRK04004 translation initiatio 99.4 3.4E-12 7.3E-17 129.5 15.6 114 19-150 6-136 (586)
220 KOG1490 GTP-binding protein CR 99.4 9.6E-13 2.1E-17 125.6 10.7 134 11-152 160-296 (620)
221 KOG1191 Mitochondrial GTPase [ 99.4 1.4E-12 3.1E-17 124.6 11.6 178 17-210 266-451 (531)
222 cd04105 SR_beta Signal recogni 99.4 4.1E-12 8.8E-17 112.6 13.4 116 20-152 1-124 (203)
223 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 1.2E-11 2.6E-16 104.7 15.3 163 19-211 22-187 (221)
224 KOG0078 GTP-binding protein SE 99.4 9.2E-12 2E-16 107.2 14.8 161 18-209 11-174 (207)
225 cd01873 RhoBTB RhoBTB subfamil 99.4 1.2E-11 2.6E-16 108.9 15.9 165 20-206 3-193 (195)
226 PLN03126 Elongation factor Tu; 99.4 8.2E-12 1.8E-16 123.7 16.4 139 16-176 78-230 (478)
227 cd01885 EF2 EF2 (for archaea a 99.4 3.4E-12 7.3E-17 114.3 12.4 115 20-150 1-138 (222)
228 PTZ00141 elongation factor 1- 99.4 3.2E-12 6.9E-17 126.0 13.2 170 16-207 4-223 (446)
229 PF08477 Miro: Miro-like prote 99.4 5.1E-13 1.1E-17 107.7 6.3 116 21-148 1-119 (119)
230 COG0532 InfB Translation initi 99.4 6.4E-12 1.4E-16 121.9 14.6 161 20-207 6-168 (509)
231 KOG0073 GTP-binding ADP-ribosy 99.4 2.4E-11 5.3E-16 99.9 15.8 157 19-206 16-175 (185)
232 PTZ00327 eukaryotic translatio 99.4 3.1E-12 6.7E-17 125.8 12.3 170 16-210 31-234 (460)
233 KOG0462 Elongation factor-type 99.4 4.9E-12 1.1E-16 122.0 13.2 167 17-213 58-239 (650)
234 KOG0080 GTPase Rab18, small G 99.4 1.6E-11 3.5E-16 100.5 14.2 158 19-207 11-172 (209)
235 PF05049 IIGP: Interferon-indu 99.4 3.8E-12 8.3E-17 120.7 12.0 178 18-213 34-222 (376)
236 KOG1145 Mitochondrial translat 99.4 1.2E-11 2.6E-16 119.4 14.6 161 19-206 153-313 (683)
237 PRK00007 elongation factor G; 99.4 1.3E-11 2.8E-16 128.4 15.8 120 16-152 7-142 (693)
238 KOG0095 GTPase Rab30, small G 99.4 2.2E-11 4.9E-16 98.4 13.4 156 20-205 8-165 (213)
239 PRK13351 elongation factor G; 99.4 9.3E-12 2E-16 129.7 14.5 118 18-152 7-140 (687)
240 TIGR00484 EF-G translation elo 99.3 1.4E-11 3E-16 128.2 15.4 121 15-152 6-142 (689)
241 PRK00741 prfC peptide chain re 99.3 1.2E-11 2.7E-16 123.9 14.2 118 18-152 9-146 (526)
242 COG1100 GTPase SAR1 and relate 99.3 6E-11 1.3E-15 106.1 16.1 116 20-152 6-126 (219)
243 COG2229 Predicted GTPase [Gene 99.3 8.1E-11 1.8E-15 99.1 15.5 155 19-205 10-174 (187)
244 PRK12739 elongation factor G; 99.3 1.6E-11 3.6E-16 127.6 13.9 119 17-152 6-140 (691)
245 PTZ00258 GTP-binding protein; 99.3 1.6E-10 3.4E-15 111.0 18.4 91 18-114 20-126 (390)
246 cd01882 BMS1 Bms1. Bms1 is an 99.3 1.4E-10 3.1E-15 104.3 17.2 112 16-152 36-148 (225)
247 KOG0394 Ras-related GTPase [Ge 99.3 3.1E-11 6.8E-16 101.2 11.6 169 18-212 8-181 (210)
248 TIGR00503 prfC peptide chain r 99.3 3.9E-11 8.5E-16 120.3 14.6 119 17-152 9-147 (527)
249 PRK09602 translation-associate 99.3 2.3E-10 5.1E-15 110.9 18.9 89 20-114 2-113 (396)
250 PLN00043 elongation factor 1-a 99.3 4.4E-11 9.6E-16 117.9 13.5 141 16-177 4-182 (447)
251 KOG0098 GTPase Rab2, small G p 99.3 2.5E-10 5.5E-15 96.0 15.8 157 19-205 6-164 (216)
252 PLN00023 GTP-binding protein; 99.3 8.5E-11 1.9E-15 109.5 14.4 121 18-151 20-165 (334)
253 COG5256 TEF1 Translation elong 99.3 6.3E-11 1.4E-15 111.6 13.2 142 16-178 4-181 (428)
254 COG4917 EutP Ethanolamine util 99.3 1.5E-11 3.3E-16 96.7 7.3 143 20-207 2-144 (148)
255 TIGR02836 spore_IV_A stage IV 99.3 1.4E-10 3E-15 110.0 14.8 131 17-152 15-195 (492)
256 KOG0087 GTPase Rab11/YPT3, sma 99.3 1.7E-10 3.7E-15 99.1 13.9 118 18-151 13-133 (222)
257 PF09439 SRPRB: Signal recogni 99.2 1.2E-11 2.7E-16 106.1 5.7 120 19-152 3-127 (181)
258 KOG0093 GTPase Rab3, small G p 99.2 1.5E-10 3.3E-15 93.4 11.5 162 19-210 21-184 (193)
259 cd01899 Ygr210 Ygr210 subfamil 99.2 5.9E-10 1.3E-14 104.9 16.7 87 22-114 1-110 (318)
260 KOG0079 GTP-binding protein H- 99.2 4E-10 8.7E-15 91.1 12.8 159 21-210 10-170 (198)
261 PTZ00416 elongation factor 2; 99.2 1.5E-10 3.2E-15 122.5 12.2 119 16-150 16-157 (836)
262 KOG0088 GTPase Rab21, small G 99.2 1.4E-10 3.1E-15 94.7 8.7 160 19-208 13-174 (218)
263 PRK09435 membrane ATPase/prote 99.2 1.4E-09 3E-14 102.6 16.5 111 68-209 148-260 (332)
264 PLN00116 translation elongatio 99.2 2.6E-10 5.6E-15 120.9 12.7 119 16-150 16-163 (843)
265 KOG1532 GTPase XAB1, interacts 99.1 1.5E-10 3.4E-15 103.1 8.6 137 70-218 117-272 (366)
266 cd01900 YchF YchF subfamily. 99.1 2.6E-10 5.7E-15 104.9 10.1 87 22-114 1-103 (274)
267 COG0480 FusA Translation elong 99.1 6.4E-10 1.4E-14 113.9 13.6 120 16-152 7-143 (697)
268 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 4.2E-10 9.2E-15 100.9 10.7 122 21-152 1-126 (232)
269 TIGR00490 aEF-2 translation el 99.1 2.1E-10 4.7E-15 119.7 9.6 118 18-152 18-153 (720)
270 PRK09601 GTP-binding protein Y 99.1 5.6E-10 1.2E-14 106.0 11.3 89 20-114 3-107 (364)
271 KOG1954 Endocytosis/signaling 99.1 1E-08 2.2E-13 95.0 18.5 130 18-152 57-226 (532)
272 COG3276 SelB Selenocysteine-sp 99.1 1.8E-09 4E-14 102.6 13.8 159 21-208 2-161 (447)
273 KOG0448 Mitofusin 1 GTPase, in 99.1 2.8E-08 6E-13 98.8 22.0 149 20-186 110-309 (749)
274 cd01851 GBP Guanylate-binding 99.1 1.8E-08 4E-13 90.5 19.0 109 16-129 4-115 (224)
275 KOG0395 Ras-related GTPase [Ge 99.1 3.6E-09 7.9E-14 92.9 13.9 161 19-210 3-166 (196)
276 PRK13768 GTPase; Provisional 99.1 1E-09 2.3E-14 100.4 10.8 134 70-212 98-250 (253)
277 KOG0086 GTPase Rab4, small G p 99.1 7.1E-09 1.5E-13 84.4 14.0 154 20-205 10-167 (214)
278 KOG1707 Predicted Ras related/ 99.1 1.5E-09 3.3E-14 105.9 11.9 175 16-217 6-183 (625)
279 KOG0410 Predicted GTP binding 99.0 1.1E-09 2.3E-14 99.9 9.5 162 18-210 177-342 (410)
280 KOG0091 GTPase Rab39, small G 99.0 5.4E-09 1.2E-13 86.1 12.5 159 20-206 9-170 (213)
281 PRK07560 elongation factor EF- 99.0 1.3E-09 2.9E-14 114.1 10.9 118 18-151 19-153 (731)
282 PRK12740 elongation factor G; 99.0 2.7E-09 5.9E-14 111.1 13.2 111 25-152 1-127 (668)
283 KOG0447 Dynamin-like GTP bindi 99.0 1.3E-08 2.9E-13 98.3 16.3 143 4-152 296-494 (980)
284 COG0481 LepA Membrane GTPase L 99.0 2.2E-09 4.8E-14 102.4 10.3 167 17-213 7-190 (603)
285 KOG0070 GTP-binding ADP-ribosy 99.0 3E-09 6.4E-14 89.9 9.9 162 16-210 14-179 (181)
286 COG1217 TypA Predicted membran 99.0 7.9E-09 1.7E-13 98.4 13.4 171 18-213 4-199 (603)
287 cd01858 NGP_1 NGP-1. Autoanti 98.9 2.2E-09 4.7E-14 91.1 7.3 56 19-79 102-157 (157)
288 KOG0075 GTP-binding ADP-ribosy 98.9 4E-09 8.6E-14 85.3 8.2 158 19-208 20-181 (186)
289 COG2895 CysN GTPases - Sulfate 98.9 1.5E-08 3.2E-13 93.6 12.8 156 17-196 4-190 (431)
290 COG5257 GCD11 Translation init 98.9 7.1E-09 1.5E-13 94.5 10.3 170 17-211 8-204 (415)
291 COG0012 Predicted GTPase, prob 98.9 3.2E-08 6.9E-13 92.9 14.5 89 20-114 3-108 (372)
292 KOG1144 Translation initiation 98.9 7.9E-09 1.7E-13 103.0 10.9 172 19-208 475-686 (1064)
293 PF03193 DUF258: Protein of un 98.9 1.1E-09 2.3E-14 92.3 4.1 62 19-84 35-102 (161)
294 KOG0071 GTP-binding ADP-ribosy 98.9 4.8E-08 1.1E-12 78.5 12.8 159 18-208 16-177 (180)
295 PRK14845 translation initiatio 98.9 2.4E-08 5.3E-13 106.3 13.6 103 31-151 473-592 (1049)
296 TIGR00750 lao LAO/AO transport 98.8 1.1E-07 2.4E-12 89.3 16.1 25 17-41 32-56 (300)
297 cd04178 Nucleostemin_like Nucl 98.8 6.5E-09 1.4E-13 89.4 7.1 57 18-79 116-172 (172)
298 TIGR01425 SRP54_euk signal rec 98.8 1.9E-07 4.2E-12 90.8 17.4 122 19-152 100-254 (429)
299 KOG0458 Elongation factor 1 al 98.8 5.4E-08 1.2E-12 95.3 13.2 142 15-177 173-351 (603)
300 cd01857 HSR1_MMR1 HSR1/MMR1. 98.8 1.2E-08 2.7E-13 84.9 7.4 58 19-81 83-140 (141)
301 KOG2486 Predicted GTPase [Gene 98.8 3.4E-08 7.4E-13 88.6 10.3 128 16-152 133-263 (320)
302 COG5192 BMS1 GTP-binding prote 98.8 5.5E-08 1.2E-12 94.5 12.4 132 16-173 66-198 (1077)
303 KOG0461 Selenocysteine-specifi 98.8 7.2E-08 1.6E-12 88.7 12.5 165 19-210 7-194 (522)
304 KOG0468 U5 snRNP-specific prot 98.8 6.3E-08 1.4E-12 95.7 12.9 117 18-150 127-262 (971)
305 KOG1486 GTP-binding protein DR 98.8 1.3E-08 2.9E-13 89.7 6.7 117 6-133 51-167 (364)
306 KOG0090 Signal recognition par 98.8 4.9E-08 1.1E-12 84.3 9.9 118 20-152 39-160 (238)
307 KOG0393 Ras-related small GTPa 98.8 5.3E-08 1.1E-12 84.3 10.3 162 20-206 5-176 (198)
308 PF00448 SRP54: SRP54-type pro 98.8 1E-07 2.2E-12 83.8 12.1 73 68-152 83-155 (196)
309 cd01849 YlqF_related_GTPase Yl 98.8 1.8E-08 3.8E-13 85.3 7.0 57 18-79 99-155 (155)
310 KOG4252 GTP-binding protein [S 98.8 1.7E-08 3.7E-13 84.4 6.6 157 18-205 19-177 (246)
311 COG4108 PrfC Peptide chain rel 98.8 8.5E-08 1.9E-12 91.0 12.1 119 18-153 11-149 (528)
312 TIGR03348 VI_IcmF type VI secr 98.8 9.9E-08 2.2E-12 104.7 14.4 131 20-162 112-264 (1169)
313 COG0050 TufB GTPases - transla 98.7 1.3E-07 2.9E-12 85.3 12.3 171 16-211 9-203 (394)
314 PRK09563 rbgA GTPase YlqF; Rev 98.7 4.7E-08 1E-12 91.3 10.0 65 18-87 120-184 (287)
315 cd01855 YqeH YqeH. YqeH is an 98.7 1.6E-08 3.5E-13 88.6 6.3 57 19-79 127-190 (190)
316 cd01856 YlqF YlqF. Proteins o 98.7 3.3E-08 7.1E-13 85.1 7.5 58 18-80 114-171 (171)
317 KOG0074 GTP-binding ADP-ribosy 98.7 8E-08 1.7E-12 77.4 8.7 162 14-205 12-175 (185)
318 PRK10416 signal recognition pa 98.7 5.6E-07 1.2E-11 84.9 15.9 125 18-152 113-274 (318)
319 KOG0076 GTP-binding ADP-ribosy 98.7 1.4E-07 3.1E-12 78.7 10.3 168 18-211 16-189 (197)
320 TIGR03596 GTPase_YlqF ribosome 98.7 7E-08 1.5E-12 89.6 9.5 62 18-84 117-178 (276)
321 PTZ00099 rab6; Provisional 98.7 3.5E-07 7.5E-12 79.1 12.9 115 69-211 29-144 (176)
322 KOG3883 Ras family small GTPas 98.7 2.9E-07 6.2E-12 75.2 11.4 119 18-152 8-133 (198)
323 KOG0097 GTPase Rab14, small G 98.7 6.5E-07 1.4E-11 72.0 13.2 154 19-202 11-166 (215)
324 PRK12288 GTPase RsgA; Reviewed 98.7 6E-08 1.3E-12 92.5 8.6 61 20-84 206-272 (347)
325 PRK12289 GTPase RsgA; Reviewed 98.7 3E-08 6.6E-13 94.6 6.4 59 20-82 173-237 (352)
326 PF03029 ATP_bind_1: Conserved 98.7 1.6E-08 3.4E-13 91.6 4.0 77 70-152 92-171 (238)
327 KOG0072 GTP-binding ADP-ribosy 98.6 4E-08 8.7E-13 79.3 4.7 162 18-210 17-180 (182)
328 TIGR00064 ftsY signal recognit 98.6 1.1E-06 2.3E-11 81.3 14.8 76 67-152 153-232 (272)
329 PRK14723 flhF flagellar biosyn 98.6 3.9E-07 8.4E-12 94.1 12.8 175 19-218 185-390 (767)
330 COG1162 Predicted GTPases [Gen 98.6 1.2E-07 2.6E-12 87.1 8.0 62 19-83 164-230 (301)
331 TIGR00157 ribosome small subun 98.6 6.9E-08 1.5E-12 88.0 6.4 59 20-83 121-185 (245)
332 PRK00098 GTPase RsgA; Reviewed 98.6 1.8E-07 3.8E-12 87.8 9.1 60 19-82 164-229 (298)
333 PRK14721 flhF flagellar biosyn 98.6 8.7E-07 1.9E-11 86.2 13.5 144 17-186 189-362 (420)
334 KOG0081 GTPase Rab27, small G 98.6 1.3E-07 2.7E-12 77.7 6.3 165 20-209 10-185 (219)
335 cd01854 YjeQ_engC YjeQ/EngC. 98.6 2.6E-07 5.5E-12 86.3 8.8 59 20-82 162-226 (287)
336 KOG0464 Elongation factor G [T 98.5 9.5E-08 2.1E-12 89.8 5.4 118 18-152 36-169 (753)
337 PRK14974 cell division protein 98.5 9.8E-07 2.1E-11 83.6 12.2 73 68-152 222-294 (336)
338 PRK11889 flhF flagellar biosyn 98.5 4.8E-07 1E-11 86.4 10.0 143 19-186 241-413 (436)
339 TIGR03597 GTPase_YqeH ribosome 98.5 2.2E-07 4.9E-12 89.4 7.9 121 20-150 155-279 (360)
340 PRK14722 flhF flagellar biosyn 98.5 1.2E-06 2.6E-11 84.0 12.1 128 19-152 137-296 (374)
341 COG1161 Predicted GTPases [Gen 98.5 2.2E-07 4.8E-12 88.0 6.8 63 18-85 131-193 (322)
342 KOG0467 Translation elongation 98.5 3.9E-07 8.4E-12 91.6 8.6 120 14-150 4-137 (887)
343 COG1419 FlhF Flagellar GTP-bin 98.5 8.7E-07 1.9E-11 84.5 10.5 147 18-189 202-377 (407)
344 TIGR00092 GTP-binding protein 98.5 4.8E-07 1E-11 86.2 8.7 90 20-114 3-108 (368)
345 KOG0083 GTPase Rab26/Rab37, sm 98.5 2.7E-07 5.8E-12 73.6 5.5 158 23-209 1-160 (192)
346 PRK12724 flagellar biosynthesi 98.5 1.8E-06 3.9E-11 83.4 12.0 124 19-152 223-374 (432)
347 COG1703 ArgK Putative periplas 98.4 1.8E-06 3.9E-11 78.8 10.9 111 68-209 143-254 (323)
348 PRK12727 flagellar biosynthesi 98.4 3.8E-06 8.3E-11 83.2 14.1 175 18-219 349-553 (559)
349 cd01859 MJ1464 MJ1464. This f 98.4 6.6E-07 1.4E-11 75.7 7.6 57 18-79 100-156 (156)
350 TIGR00073 hypB hydrogenase acc 98.4 1.2E-06 2.7E-11 77.7 9.5 25 18-42 21-45 (207)
351 COG0488 Uup ATPase components 98.4 1.4E-05 3E-10 80.3 17.2 31 18-48 28-58 (530)
352 KOG1424 Predicted GTP-binding 98.4 5.1E-07 1.1E-11 87.4 6.5 61 19-84 314-374 (562)
353 PF03308 ArgK: ArgK protein; 98.4 3.1E-07 6.6E-12 82.6 4.5 107 68-209 121-230 (266)
354 KOG3886 GTP-binding protein [S 98.4 9.7E-07 2.1E-11 77.2 7.4 124 20-152 5-131 (295)
355 KOG1491 Predicted GTP-binding 98.4 1E-06 2.3E-11 81.2 7.9 91 18-114 19-125 (391)
356 PRK05703 flhF flagellar biosyn 98.4 5.8E-06 1.3E-10 81.2 13.4 144 19-186 221-393 (424)
357 cd03229 ABC_Class3 This class 98.4 1.4E-06 3E-11 75.5 8.1 30 18-47 25-54 (178)
358 PRK12726 flagellar biosynthesi 98.4 4.3E-06 9.4E-11 79.7 12.0 144 18-186 205-378 (407)
359 TIGR00101 ureG urease accessor 98.4 1.3E-06 2.9E-11 76.9 7.9 23 20-42 2-24 (199)
360 PRK10463 hydrogenase nickel in 98.4 9.7E-07 2.1E-11 81.5 7.1 56 138-206 231-286 (290)
361 PRK13796 GTPase YqeH; Provisio 98.3 9.3E-07 2E-11 85.3 6.5 59 19-81 160-222 (365)
362 KOG0465 Mitochondrial elongati 98.3 2.9E-06 6.2E-11 83.7 9.4 121 15-152 35-171 (721)
363 COG3523 IcmF Type VI protein s 98.3 4.9E-06 1.1E-10 89.4 11.8 131 21-163 127-278 (1188)
364 PRK06995 flhF flagellar biosyn 98.3 9.9E-06 2.1E-10 80.1 13.1 25 19-43 256-280 (484)
365 KOG0460 Mitochondrial translat 98.3 8.5E-06 1.8E-10 75.3 11.6 173 16-210 51-246 (449)
366 TIGR01069 mutS2 MutS2 family p 98.3 4.6E-05 1E-09 80.2 18.8 23 20-42 323-345 (771)
367 KOG0077 Vesicle coat complex C 98.3 1.1E-05 2.4E-10 67.1 11.1 116 18-152 19-136 (193)
368 KOG1673 Ras GTPases [General f 98.3 1.1E-05 2.3E-10 66.3 10.8 171 13-208 14-185 (205)
369 cd03228 ABCC_MRP_Like The MRP 98.3 2.1E-06 4.6E-11 73.8 7.2 30 18-47 27-56 (171)
370 PRK00771 signal recognition pa 98.3 7.3E-06 1.6E-10 80.4 11.8 72 69-152 176-247 (437)
371 COG1116 TauB ABC-type nitrate/ 98.3 4.2E-06 9.1E-11 74.8 9.1 30 19-48 29-58 (248)
372 PRK12723 flagellar biosynthesi 98.3 1.2E-05 2.6E-10 77.7 12.9 123 19-152 174-327 (388)
373 cd03112 CobW_like The function 98.3 4.6E-06 1E-10 70.8 8.9 22 21-42 2-23 (158)
374 KOG2485 Conserved ATP/GTP bind 98.3 2.5E-06 5.5E-11 78.0 7.4 69 17-86 141-213 (335)
375 PRK06731 flhF flagellar biosyn 98.2 9.2E-06 2E-10 74.7 10.5 144 18-186 74-247 (270)
376 PRK10867 signal recognition pa 98.2 1.5E-05 3.2E-10 78.1 12.0 71 68-150 183-253 (433)
377 smart00275 G_alpha G protein a 98.2 6.3E-05 1.4E-09 71.9 15.6 74 67-151 182-265 (342)
378 cd00066 G-alpha G protein alph 98.2 7.1E-05 1.5E-09 70.9 15.7 74 67-151 159-242 (317)
379 cd03230 ABC_DR_subfamily_A Thi 98.2 2.2E-05 4.8E-10 67.6 11.2 121 18-147 25-154 (173)
380 TIGR00959 ffh signal recogniti 98.2 2.9E-05 6.3E-10 76.1 13.0 71 68-150 182-252 (428)
381 cd03246 ABCC_Protease_Secretio 98.2 1.3E-05 2.9E-10 69.0 9.4 30 18-47 27-56 (173)
382 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.2 2.1E-05 4.6E-10 65.6 10.3 29 18-46 25-53 (144)
383 cd03222 ABC_RNaseL_inhibitor T 98.1 1.5E-05 3.2E-10 68.9 9.4 31 17-47 23-53 (177)
384 COG1121 ZnuC ABC-type Mn/Zn tr 98.1 1.2E-05 2.6E-10 72.6 9.0 30 19-48 30-59 (254)
385 cd03216 ABC_Carb_Monos_I This 98.1 1.8E-05 3.9E-10 67.5 9.7 30 18-47 25-54 (163)
386 COG1131 CcmA ABC-type multidru 98.1 1E-05 2.2E-10 75.8 8.4 59 19-82 31-92 (293)
387 KOG0096 GTPase Ran/TC4/GSP1 (n 98.1 1.5E-05 3.3E-10 67.7 8.0 118 17-152 8-129 (216)
388 COG5258 GTPBP1 GTPase [General 98.1 5.4E-05 1.2E-09 71.1 12.4 130 17-162 115-278 (527)
389 COG3839 MalK ABC-type sugar tr 98.1 2.9E-05 6.4E-10 73.2 10.8 30 19-48 29-58 (338)
390 KOG1487 GTP-binding protein DR 98.1 5E-06 1.1E-10 74.1 5.2 107 20-135 60-166 (358)
391 COG0541 Ffh Signal recognition 98.1 2E-05 4.2E-10 75.6 9.2 73 68-152 182-254 (451)
392 cd03247 ABCC_cytochrome_bd The 98.0 7.8E-06 1.7E-10 70.7 5.9 30 18-47 27-56 (178)
393 cd03223 ABCD_peroxisomal_ALDP 98.0 8.4E-05 1.8E-09 63.5 12.2 30 18-47 26-55 (166)
394 TIGR02868 CydC thiol reductant 98.0 8.5E-06 1.8E-10 82.8 7.0 31 18-48 360-390 (529)
395 cd03215 ABC_Carb_Monos_II This 98.0 3.2E-05 7E-10 67.2 9.6 30 18-47 25-54 (182)
396 cd03115 SRP The signal recogni 98.0 0.00013 2.7E-09 62.8 13.2 73 68-152 82-154 (173)
397 COG0378 HypB Ni2+-binding GTPa 98.0 1.2E-05 2.7E-10 69.0 6.6 58 136-206 141-198 (202)
398 KOG1143 Predicted translation 98.0 3E-05 6.5E-10 72.5 9.0 142 19-182 167-341 (591)
399 COG1126 GlnQ ABC-type polar am 98.0 3.8E-05 8.2E-10 67.2 8.9 31 18-48 27-57 (240)
400 PRK00409 recombination and DNA 98.0 0.002 4.4E-08 68.1 23.5 21 20-40 328-348 (782)
401 cd03213 ABCG_EPDR ABCG transpo 98.0 9.8E-05 2.1E-09 64.8 11.7 26 18-43 34-59 (194)
402 PRK13543 cytochrome c biogenes 98.0 0.00012 2.7E-09 65.2 12.3 30 18-47 36-65 (214)
403 COG0552 FtsY Signal recognitio 98.0 3.7E-05 8E-10 71.5 8.7 124 17-150 137-297 (340)
404 COG4988 CydD ABC-type transpor 97.9 3.4E-05 7.4E-10 76.5 8.9 31 18-48 346-376 (559)
405 cd03217 ABC_FeS_Assembly ABC-t 97.9 5.6E-05 1.2E-09 66.7 9.1 26 18-43 25-50 (200)
406 cd03264 ABC_drug_resistance_li 97.9 3.6E-05 7.7E-10 68.5 7.9 27 21-47 27-53 (211)
407 PRK01889 GTPase RsgA; Reviewed 97.9 9.3E-06 2E-10 78.1 4.3 59 19-81 195-259 (356)
408 PRK11174 cysteine/glutathione 97.9 1.9E-05 4.2E-10 81.2 6.6 29 18-47 375-403 (588)
409 PRK13657 cyclic beta-1,2-gluca 97.9 2.5E-05 5.5E-10 80.4 7.2 31 18-48 360-390 (588)
410 cd03369 ABCC_NFT1 Domain 2 of 97.9 4E-05 8.7E-10 67.9 7.3 30 18-47 33-62 (207)
411 cd03232 ABC_PDR_domain2 The pl 97.9 0.0002 4.3E-09 62.8 11.4 26 18-43 32-57 (192)
412 KOG0466 Translation initiation 97.9 2.6E-05 5.5E-10 71.1 5.7 168 18-213 37-245 (466)
413 COG1120 FepC ABC-type cobalami 97.9 0.00016 3.4E-09 65.7 10.8 30 19-48 28-57 (258)
414 PRK02224 chromosome segregatio 97.8 0.02 4.4E-07 61.9 28.9 21 20-40 24-44 (880)
415 cd00267 ABC_ATPase ABC (ATP-bi 97.8 0.00012 2.7E-09 61.8 9.4 27 19-45 25-51 (157)
416 KOG0066 eIF2-interacting prote 97.8 0.0001 2.2E-09 70.5 9.5 29 20-48 614-642 (807)
417 PRK10790 putative multidrug tr 97.8 3.1E-05 6.7E-10 79.8 6.6 30 18-47 366-395 (592)
418 KOG0780 Signal recognition par 97.8 5.1E-05 1.1E-09 71.4 7.3 73 67-151 182-254 (483)
419 KOG3905 Dynein light intermedi 97.8 0.00019 4.2E-09 66.1 10.8 30 18-47 51-80 (473)
420 cd03243 ABC_MutS_homologs The 97.8 0.00019 4.1E-09 63.4 10.7 23 20-42 30-52 (202)
421 TIGR02857 CydD thiol reductant 97.8 4.4E-05 9.5E-10 77.6 7.3 30 18-47 347-376 (529)
422 cd03251 ABCC_MsbA MsbA is an e 97.8 4.5E-05 9.8E-10 68.9 6.5 30 18-47 27-56 (234)
423 KOG0082 G-protein alpha subuni 97.8 0.0011 2.3E-08 62.8 15.7 83 58-152 185-277 (354)
424 COG0488 Uup ATPase components 97.8 4.9E-05 1.1E-09 76.4 7.3 31 18-48 347-377 (530)
425 PRK11176 lipid transporter ATP 97.8 2.6E-05 5.7E-10 80.2 5.5 31 18-48 368-398 (582)
426 cd01858 NGP_1 NGP-1. Autoanti 97.8 7.8E-05 1.7E-09 63.1 7.3 91 99-208 4-94 (157)
427 TIGR02203 MsbA_lipidA lipid A 97.8 3.8E-05 8.1E-10 78.8 6.3 31 18-48 357-387 (571)
428 KOG2484 GTPase [General functi 97.8 2.8E-05 6E-10 73.5 4.7 66 15-85 248-313 (435)
429 cd03244 ABCC_MRP_domain2 Domai 97.8 6.6E-05 1.4E-09 67.2 7.0 29 19-47 30-58 (221)
430 cd03114 ArgK-like The function 97.7 0.00013 2.9E-09 61.1 8.0 20 22-41 2-21 (148)
431 KOG0962 DNA repair protein RAD 97.7 0.014 2.9E-07 63.3 24.5 28 20-47 28-59 (1294)
432 COG3840 ThiQ ABC-type thiamine 97.7 2.3E-05 4.9E-10 66.7 3.3 31 18-48 24-54 (231)
433 KOG2423 Nucleolar GTPase [Gene 97.7 1.9E-05 4.1E-10 74.3 3.0 64 16-84 304-367 (572)
434 TIGR02204 MsbA_rel ABC transpo 97.7 4.5E-05 9.7E-10 78.3 5.6 30 18-47 365-394 (576)
435 TIGR03797 NHPM_micro_ABC2 NHPM 97.7 7.9E-05 1.7E-09 78.2 7.5 31 18-48 478-508 (686)
436 cd03293 ABC_NrtD_SsuB_transpor 97.7 0.00065 1.4E-08 60.8 12.5 30 18-47 29-58 (220)
437 COG1618 Predicted nucleotide k 97.7 0.0013 2.9E-08 54.9 13.1 117 19-148 5-141 (179)
438 KOG0446 Vacuolar sorting prote 97.7 2.3E-05 5.1E-10 80.5 3.4 129 19-152 29-214 (657)
439 TIGR03375 type_I_sec_LssB type 97.7 4.5E-05 9.8E-10 80.1 5.3 31 18-48 490-520 (694)
440 TIGR03522 GldA_ABC_ATP gliding 97.7 0.00018 4E-09 67.6 8.9 30 18-47 27-56 (301)
441 COG1122 CbiO ABC-type cobalt t 97.7 0.00047 1E-08 62.2 11.1 31 18-48 29-59 (235)
442 COG0419 SbcC ATPase involved i 97.7 0.061 1.3E-06 58.4 29.3 21 20-40 26-46 (908)
443 cd03280 ABC_MutS2 MutS2 homolo 97.7 0.00076 1.7E-08 59.4 12.3 21 20-40 29-49 (200)
444 COG1125 OpuBA ABC-type proline 97.7 8.6E-05 1.9E-09 66.5 6.1 30 19-48 27-56 (309)
445 COG1136 SalX ABC-type antimicr 97.7 4.2E-05 9.1E-10 68.1 4.1 31 18-48 30-60 (226)
446 TIGR03740 galliderm_ABC gallid 97.7 0.0007 1.5E-08 60.7 12.1 30 18-47 25-54 (223)
447 COG1134 TagH ABC-type polysacc 97.7 0.00051 1.1E-08 61.3 10.8 30 18-47 52-81 (249)
448 TIGR03796 NHPM_micro_ABC1 NHPM 97.7 5.8E-05 1.3E-09 79.5 5.7 30 18-47 504-533 (710)
449 PF05879 RHD3: Root hair defec 97.6 0.0029 6.3E-08 66.6 18.0 58 25-82 1-61 (742)
450 PRK11160 cysteine/glutathione 97.6 8.2E-05 1.8E-09 76.4 6.4 31 18-48 365-395 (574)
451 TIGR00958 3a01208 Conjugate Tr 97.6 0.0001 2.3E-09 77.5 7.4 30 18-47 506-535 (711)
452 PRK13537 nodulation ABC transp 97.6 0.00087 1.9E-08 63.2 12.6 30 18-47 32-61 (306)
453 PF05783 DLIC: Dynein light in 97.6 0.00043 9.4E-09 68.6 10.8 29 17-45 23-51 (472)
454 cd03238 ABC_UvrA The excision 97.6 0.00029 6.3E-09 60.8 8.5 24 18-41 20-43 (176)
455 TIGR00606 rad50 rad50. This fa 97.6 0.01 2.2E-07 66.8 22.8 21 20-40 29-49 (1311)
456 COG1119 ModF ABC-type molybden 97.6 0.00099 2.1E-08 59.5 11.8 28 19-46 57-84 (257)
457 PRK10789 putative multidrug tr 97.6 7.5E-05 1.6E-09 76.6 5.4 31 18-48 340-370 (569)
458 PRK03918 chromosome segregatio 97.6 0.072 1.6E-06 57.7 28.5 20 21-40 25-44 (880)
459 PF02263 GBP: Guanylate-bindin 97.6 0.00048 1E-08 63.4 9.9 67 16-82 18-87 (260)
460 COG1124 DppF ABC-type dipeptid 97.6 0.00052 1.1E-08 61.2 9.5 31 18-48 32-62 (252)
461 COG1127 Ttg2A ABC-type transpo 97.6 0.00027 5.9E-09 62.8 7.6 44 3-48 20-63 (263)
462 KOG0996 Structural maintenance 97.6 0.036 7.8E-07 59.1 24.2 19 22-40 111-129 (1293)
463 PF00005 ABC_tran: ABC transpo 97.6 5.3E-05 1.1E-09 62.3 3.0 29 19-47 11-39 (137)
464 cd03289 ABCC_CFTR2 The CFTR su 97.6 0.00014 3.1E-09 67.4 6.2 27 18-44 29-55 (275)
465 PRK13695 putative NTPase; Prov 97.6 0.0012 2.6E-08 56.8 11.5 22 21-42 2-23 (174)
466 TIGR01193 bacteriocin_ABC ABC- 97.6 8.9E-05 1.9E-09 78.0 5.3 31 18-48 499-529 (708)
467 KOG1970 Checkpoint RAD17-RFC c 97.5 0.003 6.6E-08 62.4 15.2 171 18-213 109-288 (634)
468 PRK11819 putative ABC transpor 97.5 0.00088 1.9E-08 68.5 12.3 30 18-47 32-61 (556)
469 TIGR01192 chvA glucan exporter 97.5 0.00018 3.8E-09 74.1 7.1 30 18-47 360-389 (585)
470 COG0411 LivG ABC-type branched 97.5 1.6E-05 3.4E-10 70.8 -0.6 31 18-48 29-59 (250)
471 cd01859 MJ1464 MJ1464. This f 97.5 0.00025 5.3E-09 59.8 6.8 88 101-210 10-97 (156)
472 COG2274 SunT ABC-type bacterio 97.5 0.0002 4.3E-09 74.5 7.3 31 18-48 498-528 (709)
473 KOG0459 Polypeptide release fa 97.5 5.1E-05 1.1E-09 71.7 2.5 167 16-202 76-279 (501)
474 cd01856 YlqF YlqF. Proteins o 97.5 0.00031 6.8E-09 60.3 7.3 93 93-209 9-101 (171)
475 PRK11144 modC molybdate transp 97.5 0.0012 2.6E-08 63.6 12.0 30 18-47 23-52 (352)
476 COG4525 TauB ABC-type taurine 97.5 0.00015 3.3E-09 62.4 5.1 29 19-47 31-59 (259)
477 TIGR01846 type_I_sec_HlyB type 97.5 0.00015 3.2E-09 76.2 6.1 31 18-48 482-512 (694)
478 TIGR01186 proV glycine betaine 97.5 0.0016 3.5E-08 62.7 12.7 30 18-47 18-47 (363)
479 TIGR01842 type_I_sec_PrtD type 97.5 0.00045 9.8E-09 70.5 9.5 31 18-48 343-373 (544)
480 cd03225 ABC_cobalt_CbiO_domain 97.5 0.00011 2.3E-09 65.4 4.2 30 18-47 26-55 (211)
481 cd03261 ABC_Org_Solvent_Resist 97.5 0.00011 2.3E-09 66.6 4.1 30 18-47 25-54 (235)
482 KOG0250 DNA repair protein RAD 97.5 0.019 4E-07 61.0 20.7 18 23-40 66-83 (1074)
483 PRK15439 autoinducer 2 ABC tra 97.5 0.00063 1.4E-08 68.9 10.0 30 18-47 36-65 (510)
484 PLN03232 ABC transporter C fam 97.5 0.00087 1.9E-08 76.1 12.0 30 18-47 642-671 (1495)
485 PRK15177 Vi polysaccharide exp 97.5 0.00012 2.6E-09 65.3 4.2 29 19-47 13-41 (213)
486 cd03255 ABC_MJ0796_Lo1CDE_FtsE 97.5 0.00012 2.6E-09 65.4 4.1 30 18-47 29-58 (218)
487 PRK10522 multidrug transporter 97.5 0.00023 5.1E-09 72.6 6.7 31 18-48 348-378 (547)
488 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.0018 3.9E-08 57.7 11.6 22 20-41 30-51 (213)
489 cd03226 ABC_cobalt_CbiO_domain 97.5 0.00012 2.6E-09 64.7 4.0 30 18-47 25-54 (205)
490 TIGR02673 FtsE cell division A 97.5 0.00013 2.7E-09 65.0 4.2 30 18-47 27-56 (214)
491 cd03265 ABC_DrrA DrrA is the A 97.5 0.00012 2.7E-09 65.4 4.2 30 18-47 25-54 (220)
492 TIGR03596 GTPase_YlqF ribosome 97.4 0.00044 9.6E-09 64.2 7.9 93 94-210 12-104 (276)
493 TIGR01166 cbiO cobalt transpor 97.4 0.00013 2.8E-09 63.7 4.1 29 19-47 18-46 (190)
494 COG1135 AbcC ABC-type metal io 97.4 0.00078 1.7E-08 62.1 9.1 31 18-48 31-61 (339)
495 TIGR00960 3a0501s02 Type II (G 97.4 0.00013 2.8E-09 65.1 4.1 30 18-47 28-57 (216)
496 PLN03130 ABC transporter C fam 97.4 0.00058 1.3E-08 77.7 10.2 30 18-47 642-671 (1622)
497 COG4987 CydC ABC-type transpor 97.4 0.00024 5.2E-09 69.8 6.1 31 18-48 363-393 (573)
498 COG4152 ABC-type uncharacteriz 97.4 0.00096 2.1E-08 59.5 9.3 30 18-47 27-56 (300)
499 cd03259 ABC_Carb_Solutes_like 97.4 0.00014 3E-09 64.8 4.1 30 18-47 25-54 (213)
500 KOG0964 Structural maintenance 97.4 0.11 2.4E-06 54.5 25.1 20 21-40 27-46 (1200)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=100.00 E-value=1.3e-35 Score=264.77 Aligned_cols=206 Identities=42% Similarity=0.750 Sum_probs=176.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|+||||++|+|+|...|.+..+..++|..+......+ .+..++|||||||+|+..+.+.+..++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4799999999999999999999999998877788888888888876 999999999999999988888888999999999
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
..+++|+||||++++ +++..+...++.+...||..++++++||+|++|.+.+ ..+++|+....+..++.++..|++|
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~--~~~~~~l~~~~~~~l~~li~~c~~R 156 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELED--DSLEDYLKKESNEALQELIEKCGGR 156 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTT--TTHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccc--ccHHHHHhccCchhHhHHhhhcCCE
Confidence 999999999999999 9999999999999999999999999999999999887 6699999865567799999999999
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESK 229 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~ 229 (371)
++.|+|..........++.+||+.|..++..++|.+|++++|.+++....
T Consensus 157 ~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n~g~~~~~~~~~~~~~~~~ 206 (212)
T PF04548_consen 157 YHVFNNKTKDKEKDESQVSELLEKIEEMVQENGGQYYSNEMFEEAEERKE 206 (212)
T ss_dssp EEECCTTHHHHHHHHHHHHHHHHHHHHHHHHTTTT--B-HHHHHHHHCCH
T ss_pred EEEEeccccchhhhHHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 99999996666667799999999999999999999999999999995444
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=100.00 E-value=3.2e-33 Score=246.74 Aligned_cols=196 Identities=51% Similarity=0.847 Sum_probs=176.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|+|+|...+.+.....++|..+......+ .+..++||||||+++...+......++..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999998877666677888888877777 889999999999999876666677888888888
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
+.+++|++|||++++. ++..+...++.++..||..+++++++|+|++|.+.+ .++++|+.. .+..++.++..|++|
T Consensus 80 ~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~-~~~~l~~l~~~c~~r 155 (196)
T cd01852 80 SAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLEN-SCEALKRLLEKCGGR 155 (196)
T ss_pred cCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHh-ccHHHHHHHHHhCCe
Confidence 8899999999999985 999999999999999999888999999999999977 689999885 558899999999999
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECF 221 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~ 221 (371)
++.|+|... ++..+.|+.+|++.|..+++.|++.+|++++|
T Consensus 156 ~~~f~~~~~-~~~~~~q~~~Ll~~i~~~~~~~~~~~~~~~~~ 196 (196)
T cd01852 156 YVAFNNKAK-GEEQEQQVKELLAKVESMVKENGGKPYTNDMY 196 (196)
T ss_pred EEEEeCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCCCCCCC
Confidence 999999987 77889999999999999999999999998764
No 3
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=4.8e-22 Score=179.20 Aligned_cols=204 Identities=19% Similarity=0.276 Sum_probs=152.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+++|+|++|||||+|.|+|... +..++.+.|+......+...+...+.++||||++.+ .....+-+.+.+..
T Consensus 7 GfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a~~ 81 (298)
T COG1159 7 GFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAARS 81 (298)
T ss_pred EEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHHHH
Confidence 5799999999999999999999998 666666667666666555557789999999999976 44567778888888
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhh-HHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKT-LEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~-l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
++..+|+++||+|++.++...+...++.++.. . .|+++++||+|...+ .. +..... ...
T Consensus 82 sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~---~--~pvil~iNKID~~~~--~~~l~~~~~---------~~~---- 141 (298)
T COG1159 82 ALKDVDLILFVVDADEGWGPGDEFILEQLKKT---K--TPVILVVNKIDKVKP--KTVLLKLIA---------FLK---- 141 (298)
T ss_pred HhccCcEEEEEEeccccCCccHHHHHHHHhhc---C--CCeEEEEEccccCCc--HHHHHHHHH---------HHH----
Confidence 99999999999999988999999999998872 2 399999999998876 33 222222 111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQ 256 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 256 (371)
..+.|....+.||+++.++..|++.+...++++ ..+|..+++.+...+- ...++++++- +..+..|+++.
T Consensus 142 ~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpeg-~~~yp~d~itD~~~rf--~~aEiiREk~-----~~~l~eElPhs 211 (298)
T COG1159 142 KLLPFKEIVPISALKGDNVDTLLEIIKEYLPEG-PWYYPEDQITDRPERF--LAAEIIREKL-----LLLLREELPHS 211 (298)
T ss_pred hhCCcceEEEeeccccCCHHHHHHHHHHhCCCC-CCcCChhhccCChHHH--HHHHHHHHHH-----HHhcccccCce
Confidence 123455666789999999999999999999974 4477776666655322 3233454433 55566655544
No 4
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.87 E-value=4.2e-21 Score=176.79 Aligned_cols=159 Identities=24% Similarity=0.326 Sum_probs=117.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
...+.+..+|+|+|.+|+||||++|+|+|...+..... .+.+..+....... ++..+.||||||+++....+.... +
T Consensus 32 ~~~~~~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~~~e~~~-~ 108 (313)
T TIGR00991 32 KEEDVSSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGYINDQAV-N 108 (313)
T ss_pred ccccccceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHHHHHHHH-H
Confidence 44455678999999999999999999999886433221 22233333333444 788999999999998643333222 2
Q ss_pred HHHHHhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
+.++. ....++|++|||.+.+ .+++..+..+++.+...||..++.++|+|+||+|...+++.++++|+.+ +...++.
T Consensus 109 ~ik~~-l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 109 IIKRF-LLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHHH-hhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22222 1234899999997665 4788899999999999999999999999999999886666889999985 7778888
Q ss_pred HHHhc
Q 040649 172 ILQLC 176 (371)
Q Consensus 172 ~~~~~ 176 (371)
++..+
T Consensus 187 ~i~~~ 191 (313)
T TIGR00991 187 VIHSG 191 (313)
T ss_pred HHHHH
Confidence 87754
No 5
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.87 E-value=6.2e-21 Score=188.41 Aligned_cols=162 Identities=22% Similarity=0.294 Sum_probs=125.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|+|+|...+.+..... .|+.+....... .+..++||||||++++.... .....+..++.
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~vss~~~-~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik 194 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFSTDAFGM-GTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSVK 194 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccccCCCC-CceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHHH
Confidence 4689999999999999999999998876644333 344444433444 78899999999999875432 23445555553
Q ss_pred hh--cCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-----hhHHHHhcccCCchHH
Q 040649 99 MA--KDGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-----KTLEDYLGLECPKPLK 170 (371)
Q Consensus 99 ~~--~~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-----~~l~~~l~~~~~~~l~ 170 (371)
.+ ..++|+||||++++. .....+..+++.|...||..+|+++||||||+|.+.+++ .++++|+.+ ++..++
T Consensus 195 ~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq 273 (763)
T TIGR00993 195 KFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQ 273 (763)
T ss_pred HHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHH
Confidence 22 347899999998762 233467789999999999999999999999999986432 589999985 889999
Q ss_pred HHHHhcCCceEeec
Q 040649 171 EILQLCDNRWVLFD 184 (371)
Q Consensus 171 ~~~~~~~~r~~~f~ 184 (371)
.++..|.+++..|+
T Consensus 274 ~~Irq~~g~~~l~n 287 (763)
T TIGR00993 274 QAIGQAVGDLRLMN 287 (763)
T ss_pred HHHHHhcCcceecc
Confidence 99999999777665
No 6
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.83 E-value=2.1e-20 Score=156.87 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=102.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+++|.|++|||||+|+|+|.... ...++++|.......+.+ .+..+.+|||||+++...... ++-...-..
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~--v~n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~---ee~v~~~~l 74 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK--VGNWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSE---EERVARDYL 74 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE--EEESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSH---HHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce--ecCCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCc---HHHHHHHHH
Confidence 47999999999999999999999953 344677888777777776 778999999999987644321 111111122
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|++++|+|++ .+. .+..++..+.+. | .|+++|+||+|.....+..++ ...+-...+.+
T Consensus 75 ~~~~~D~ii~VvDa~-~l~-r~l~l~~ql~e~-g----~P~vvvlN~~D~a~~~g~~id----------~~~Ls~~Lg~p 137 (156)
T PF02421_consen 75 LSEKPDLIIVVVDAT-NLE-RNLYLTLQLLEL-G----IPVVVVLNKMDEAERKGIEID----------AEKLSERLGVP 137 (156)
T ss_dssp HHTSSSEEEEEEEGG-GHH-HHHHHHHHHHHT-T----SSEEEEEETHHHHHHTTEEE-----------HHHHHHHHTS-
T ss_pred hhcCCCEEEEECCCC-CHH-HHHHHHHHHHHc-C----CCEEEEEeCHHHHHHcCCEEC----------HHHHHHHhCCC
Confidence 256799999999998 333 334455555543 3 399999999997644222221 33444455667
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLV 204 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i 204 (371)
++++ ||.++.|+++|++.|
T Consensus 138 vi~~------sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 138 VIPV------SARTGEGIDELKDAI 156 (156)
T ss_dssp EEEE------BTTTTBTHHHHHHHH
T ss_pred EEEE------EeCCCcCHHHHHhhC
Confidence 7764 566789999999865
No 7
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.82 E-value=2.4e-19 Score=163.00 Aligned_cols=134 Identities=29% Similarity=0.375 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc---hHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE---SEYVSKE 92 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~---~~~~~~e 92 (371)
.....+|+|+|++|+|||||+|+|+|...+... ...+.|..+......+ ++..++||||||+.+.... .......
T Consensus 28 ~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred ccCCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 345689999999999999999999998875443 2334565566555555 7889999999999986321 1222222
Q ss_pred HHHHHhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
+..++. ..++|+++||..++ .+++..+..+++.+...||..++.++++|+||+|...++
T Consensus 106 I~~~l~--~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 106 IKRYLK--KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHHHh--ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 322222 24689999998776 478888999999999999999999999999999987554
No 8
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.81 E-value=4.6e-19 Score=168.48 Aligned_cols=161 Identities=22% Similarity=0.232 Sum_probs=126.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|++||+|++|||||+|.|+|....-. ...+++|.+..+....| .+..+.+|||+|+.+.+ .+.+...+......
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~~~--~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDDGD--EDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCcCC--chHHHHHHHHHHHH
Confidence 6899999999999999999999886322 33578899888888888 88889999999998642 34566777777777
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
+...+|++|||+|+..++++.|..+..+|+.. .+|+++|+||+|..... .... ++...--+.
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~-----~kpviLvvNK~D~~~~e-~~~~------------efyslG~g~ 141 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRS-----KKPVILVVNKIDNLKAE-ELAY------------EFYSLGFGE 141 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEEcccCchhh-hhHH------------HHHhcCCCC
Confidence 88889999999999999999999999999832 24999999999976331 1122 222211123
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
++ ..||.++.|+.+|++.+...+
T Consensus 142 ~~------~ISA~Hg~Gi~dLld~v~~~l 164 (444)
T COG1160 142 PV------PISAEHGRGIGDLLDAVLELL 164 (444)
T ss_pred ce------EeehhhccCHHHHHHHHHhhc
Confidence 33 378889999999999999886
No 9
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=1e-18 Score=163.64 Aligned_cols=180 Identities=20% Similarity=0.320 Sum_probs=119.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|++|||||||+|+|+|..... .+..+.|+..........++..+.++||||+.+.. ......+......
T Consensus 6 g~V~iiG~pn~GKSTLin~L~g~~~~~--vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~~ 80 (292)
T PRK00089 6 GFVAIVGRPNVGKSTLLNALVGQKISI--VSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAWS 80 (292)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCceee--cCCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHHH
Confidence 579999999999999999999987632 22233333333333322245689999999998753 2233444555556
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
+...+|+++||+|++.+++..+..++..+... ..|+++|+||+|..... ..+...+. .+....+
T Consensus 81 ~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~~~-~~l~~~~~--------~l~~~~~-- 144 (292)
T PRK00089 81 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVKDK-EELLPLLE--------ELSELMD-- 144 (292)
T ss_pred HHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCCCH-HHHHHHHH--------HHHhhCC--
Confidence 67789999999999976777777666666531 24999999999987331 23333222 2222111
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAEL 224 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~ 224 (371)
+.+....|++++.|+.+|++.+...++... ..|..+.+...
T Consensus 145 ---~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~-~~y~~~~~td~ 185 (292)
T PRK00089 145 ---FAEIVPISALKGDNVDELLDVIAKYLPEGP-PYYPEDQITDR 185 (292)
T ss_pred ---CCeEEEecCCCCCCHHHHHHHHHHhCCCCC-CCCCCCCCCCC
Confidence 223334677888999999999999988754 35665544443
No 10
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.80 E-value=1e-18 Score=161.75 Aligned_cols=177 Identities=19% Similarity=0.226 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|++|+|||||+|+|+|.... ..+..+.|+..........++..+.++||||+.... ......+......+
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~--~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS--ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe--ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 6899999999999999999998752 222222233222223333355679999999998642 12333344445556
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
+..+|++++|+|++.+.+.. ..++..+... ..|+++|+||+|.... ..+.... ..+....+
T Consensus 77 l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~-----~~p~ilV~NK~Dl~~~--~~~~~~~--------~~~~~~~~--- 137 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGDG-EFVLTKLQNL-----KRPVVLTRNKLDNKFK--DKLLPLI--------DKYAILED--- 137 (270)
T ss_pred HhhCCEEEEEEECCCCCchH-HHHHHHHHhc-----CCCEEEEEECeeCCCH--HHHHHHH--------HHHHhhcC---
Confidence 67889999999998654443 4444444432 2499999999998643 2222222 22222111
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHH
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAEL 224 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~ 224 (371)
|......||+++.|+++|++.+...++..+ ..|..+.....
T Consensus 138 --~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~-~~~~~~~~t~~ 178 (270)
T TIGR00436 138 --FKDIVPISALTGDNTSFLAAFIEVHLPEGP-FRYPEDYVTDQ 178 (270)
T ss_pred --CCceEEEecCCCCCHHHHHHHHHHhCCCCC-CCCCCcccCCC
Confidence 122334788899999999999999987643 35665555444
No 11
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.8e-18 Score=145.58 Aligned_cols=170 Identities=18% Similarity=0.231 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH---HHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE---YVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~---~~~~ei~ 94 (371)
..+-|+++|+|++|||||||+|+|..........+|.|....++.+. ..+.+||.||++-..++.. .....+.
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~----~~~~lVDlPGYGyAkv~k~~~e~w~~~i~ 98 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD----DELRLVDLPGYGYAKVPKEVKEKWKKLIE 98 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec----CcEEEEeCCCcccccCCHHHHHHHHHHHH
Confidence 45789999999999999999999977433333456777666654432 2378999999998766542 2223334
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.++... ..+.++++++|+++++...|..+++++... .+ |+++|+||+|.+.. ......+.. +...+.
T Consensus 99 ~YL~~R-~~L~~vvlliD~r~~~~~~D~em~~~l~~~---~i--~~~vv~tK~DKi~~--~~~~k~l~~-----v~~~l~ 165 (200)
T COG0218 99 EYLEKR-ANLKGVVLLIDARHPPKDLDREMIEFLLEL---GI--PVIVVLTKADKLKK--SERNKQLNK-----VAEELK 165 (200)
T ss_pred HHHhhc-hhheEEEEEEECCCCCcHHHHHHHHHHHHc---CC--CeEEEEEccccCCh--hHHHHHHHH-----HHHHhc
Confidence 444332 247899999999999999999999999875 33 99999999999976 333322222 222221
Q ss_pred -hcCCc--eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 -LCDNR--WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 -~~~~r--~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..... +.. .|..++.|+++|...|...+..
T Consensus 166 ~~~~~~~~~~~------~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 166 KPPPDDQWVVL------FSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCccceEEE------EecccccCHHHHHHHHHHHhhc
Confidence 11111 233 3445668899999998876653
No 12
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.78 E-value=4.7e-17 Score=150.53 Aligned_cols=156 Identities=22% Similarity=0.310 Sum_probs=112.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC----CCC--CccceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS----AGS--SAITKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~----~~~--~~~t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~ 88 (371)
-..+|+++|++|+|||||+|+|+|....... ... ...|.........+. ++ ..++|||||||+|.-. +..
T Consensus 22 i~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id-Ns~ 100 (373)
T COG5019 22 IDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID-NSK 100 (373)
T ss_pred CceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc-ccc
Confidence 4579999999999999999999998543221 111 122333333333331 22 2799999999998633 355
Q ss_pred HHHHHHHHHhhh------------------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 89 VSKEIAKCIGMA------------------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 89 ~~~ei~~~~~~~------------------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+..+..++... -..+||+||.+..+ +++++.|..+++.|... .++|.|+.|.|.
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~------vNlIPVI~KaD~ 174 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKR------VNLIPVIAKADT 174 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhcc------cCeeeeeecccc
Confidence 555555554321 24689999999765 78999999888888765 299999999999
Q ss_pred CCCchhhHHHHhcccCCchHHHHHHhcCCceE-eecCcc
Q 040649 150 LEDNEKTLEDYLGLECPKPLKEILQLCDNRWV-LFDNKT 187 (371)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~-~f~~~~ 187 (371)
+.. ..+..+... +...+..+..++| +|++..
T Consensus 175 lT~--~El~~~K~~-----I~~~i~~~nI~vf~pyd~e~ 206 (373)
T COG5019 175 LTD--DELAEFKER-----IREDLEQYNIPVFDPYDPED 206 (373)
T ss_pred CCH--HHHHHHHHH-----HHHHHHHhCCceeCCCCccc
Confidence 988 778877766 8889999999888 566654
No 13
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=4.7e-18 Score=161.87 Aligned_cols=202 Identities=20% Similarity=0.243 Sum_probs=128.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-CccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-SAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|.|+|.... ..++ ..+|.......+.+ ++..+.+|||||+..... .....+.+...
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~--ivs~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~~---~l~~~~~r~~~ 126 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLS--IVTPKVQTTRSIITGIITL-KDTQVILYDTPGIFEPKG---SLEKAMVRCAW 126 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCcee--eccCCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCcc---cHHHHHHHHHH
Confidence 48999999999999999999998763 2222 23333333333444 677899999999865322 23334455555
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.++.++|++|||+|...++...+..++..+... + .|.++|+||+|.... .+.+ +...+.....
T Consensus 127 ~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~-~----~p~IlViNKiDl~~~---~~~~---------~~~~l~~~~~ 189 (339)
T PRK15494 127 SSLHSADLVLLIIDSLKSFDDITHNILDKLRSL-N----IVPIFLLNKIDIESK---YLND---------IKAFLTENHP 189 (339)
T ss_pred HHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhc-C----CCEEEEEEhhcCccc---cHHH---------HHHHHHhcCC
Confidence 556788999999998877777776666666542 2 277889999997532 1211 2222222221
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESKLKQTTIWLEQQLAKEQAARLKGEEVAQ 256 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 256 (371)
+....+.||+++.|+++|++.+...++. +...|..+++.+.-.+ ..-.+++++ +.+..+..|+++.
T Consensus 190 ----~~~i~~iSAktg~gv~eL~~~L~~~l~~-~~~~~~~~~~td~~~~--~~~~eiiRe-----~~~~~~~~EiP~~ 255 (339)
T PRK15494 190 ----DSLLFPISALSGKNIDGLLEYITSKAKI-SPWLYAEDDITDLPMR--FIAAEITRE-----QLFLNLQKELPYK 255 (339)
T ss_pred ----CcEEEEEeccCccCHHHHHHHHHHhCCC-CCCCCCCCCCCCCCHH--HHHHHHHHH-----HHHhhCCcccCce
Confidence 1122346888999999999999998886 4456776666655321 122223444 3366666666644
No 14
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.77 E-value=2.4e-17 Score=141.17 Aligned_cols=163 Identities=23% Similarity=0.207 Sum_probs=98.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~ei~~~~~ 98 (371)
++|+++|++|+|||||+|+|++...... .....|.........+ .+..+.+|||||+.+...... .........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~-- 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPEVA--PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAITA-- 75 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCccC--CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHHH--
Confidence 4799999999999999999999765322 1223344444433444 567899999999865322111 111111111
Q ss_pred hhcCCceEEEEEEeCCCCCC---HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFS---QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~---~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.....|++|+|+|++.+.+ .....++..+...++ ..|+++|+||+|.... ..+.. ...+...
T Consensus 76 -~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~---~~pvilv~NK~Dl~~~--~~~~~---------~~~~~~~ 140 (168)
T cd01897 76 -LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK---NKPVIVVLNKIDLLTF--EDLSE---------IEEEEEL 140 (168)
T ss_pred -HHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcC---cCCeEEEEEccccCch--hhHHH---------HHHhhhh
Confidence 1123589999999985432 223445566655442 2499999999998754 32222 1122221
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+++ ..||+++.|+.+|++.+...+
T Consensus 141 ~~~~~~------~~Sa~~~~gi~~l~~~l~~~~ 167 (168)
T cd01897 141 EGEEVL------KISTLTEEGVDEVKNKACELL 167 (168)
T ss_pred ccCceE------EEEecccCCHHHHHHHHHHHh
Confidence 122222 368889999999999987654
No 15
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.75 E-value=3.1e-17 Score=140.66 Aligned_cols=164 Identities=21% Similarity=0.214 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc-EEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ-VVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.|+++|++|+|||||+|+|+|.....+ ..++.|.........+ .+. .+.++||||+.+...........+..
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~~v~--~~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~---- 74 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPKIA--DYPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLR---- 74 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCcccc--CCCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHH----
Confidence 589999999999999999998664211 1122333333333444 444 89999999986432111112222222
Q ss_pred hcCCceEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc-
Q 040649 100 AKDGIHAVLLVFSVRSR-FSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC- 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~- 176 (371)
....+|++++|+|++.+ -+-.. ..+...+....+.....|+++|+||+|.... ...... +..+....
T Consensus 75 ~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~--------~~~~~~~~~ 144 (170)
T cd01898 75 HIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE--EELFEL--------LKELLKELW 144 (170)
T ss_pred HHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc--hhhHHH--------HHHHHhhCC
Confidence 23457999999999854 22222 3344445443221123599999999997654 222222 22233332
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+++ .|++++.|+.++++.+..+
T Consensus 145 ~~~~~~------~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 145 GKPVFP------ISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CCCEEE------EecCCCCCHHHHHHHHHhh
Confidence 222333 5777889999999987654
No 16
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.75 E-value=1e-16 Score=154.76 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=111.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
-|+|||.||||||||+|+|++... .....+.+|.......+.+.+...+.++||||+.............+.+ .
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~--~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~----~ 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP--KVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLK----H 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc--cccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHH----H
Confidence 799999999999999999998764 2223345565555555555345679999999998643222223344443 3
Q ss_pred cCCceEEEEEEeCCC---C-CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 101 KDGIHAVLLVFSVRS---R-FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~---~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
+..+|++++|+|++. . .......++..+......-...|+++|+||+|.... ..+... +..+....
T Consensus 235 i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~--~el~~~--------l~~l~~~~ 304 (390)
T PRK12298 235 LERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE--EEAEER--------AKAIVEAL 304 (390)
T ss_pred HHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh--HHHHHH--------HHHHHHHh
Confidence 456699999999871 1 112223444555443211123599999999997644 333322 22233322
Q ss_pred C--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHH
Q 040649 177 D--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECF 221 (371)
Q Consensus 177 ~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~ 221 (371)
+ ..+++ .||+++.++.+|++.|...++.. ...|..+..
T Consensus 305 ~~~~~Vi~------ISA~tg~GIdeLl~~I~~~L~~~-~~~~~~~~~ 344 (390)
T PRK12298 305 GWEGPVYL------ISAASGLGVKELCWDLMTFIEEN-PREEAEEAE 344 (390)
T ss_pred CCCCCEEE------EECCCCcCHHHHHHHHHHHhhhC-cccCCcccc
Confidence 2 13333 67778899999999999988764 334554444
No 17
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.75 E-value=4.5e-17 Score=131.17 Aligned_cols=116 Identities=21% Similarity=0.316 Sum_probs=80.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|.+|+|||||+|+|+|........ ..+.|.......+.+ .+..+.++||||+.+........ ..+.......
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~~~-~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDNDG-KEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHHHH-HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhHHH-HHHHHHHHHH
Confidence 58999999999999999999975433322 244555554444555 77888999999998764332211 2233344433
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
..+|+++||+|+..+....+..+++.++ . ..|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~--~----~~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK--N----KKPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH--T----TSEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh--c----CCCEEEEEcC
Confidence 7789999999988655555666767773 1 2499999998
No 18
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.74 E-value=6.2e-17 Score=136.47 Aligned_cols=155 Identities=23% Similarity=0.261 Sum_probs=100.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|++|+|||||+|++++....... ...++|.........+ .+..+.++||||+.+.... ...........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence 58999999999999999999987642221 1234444443334444 6678999999998875322 11111222233
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|++++|+|++.+.+..+...+.. .. ..|+++|+||+|.... ... ....+..+
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~----~~~vi~v~nK~D~~~~--~~~--------------~~~~~~~~ 133 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---PA----DKPIIVVLNKSDLLPD--SEL--------------LSLLAGKP 133 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---hc----CCCEEEEEEchhcCCc--ccc--------------ccccCCCc
Confidence 4567899999999997676666554443 11 2499999999998754 111 11222334
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
++. .|+.++.|+.+|++.+...+
T Consensus 134 ~~~------~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 134 IIA------ISAKTGEGLDELKEALLELA 156 (157)
T ss_pred eEE------EECCCCCCHHHHHHHHHHhh
Confidence 444 46667799999999887654
No 19
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.74 E-value=2.1e-16 Score=138.97 Aligned_cols=171 Identities=15% Similarity=0.264 Sum_probs=105.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~~ 95 (371)
..++|+|+|.+|+|||||+|+|+|...........+.|....... .+..+.||||||+.....+.. .....+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~ 98 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKEEKEKWQKLIE 98 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCchHHHHHHHHHH
Confidence 457899999999999999999998752222122233443333322 246789999999875432221 11111222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
........++++++|+|++.+++..+..+...+.. .+ .|+++|+||+|.... ......... +...+..
T Consensus 99 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~-~~----~~~iiv~nK~Dl~~~--~~~~~~~~~-----i~~~l~~ 166 (196)
T PRK00454 99 EYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKE-YG----IPVLIVLTKADKLKK--GERKKQLKK-----VRKALKF 166 (196)
T ss_pred HHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHH-cC----CcEEEEEECcccCCH--HHHHHHHHH-----HHHHHHh
Confidence 21223345688999999887777766656665543 22 389999999998755 333322221 3334432
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+++ ..|++++.++.++++.+..++++
T Consensus 167 ~~~~~~------~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 167 GDDEVI------LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred cCCceE------EEEcCCCCCHHHHHHHHHHHhcC
Confidence 223344 35777889999999999887764
No 20
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.74 E-value=6.6e-17 Score=137.51 Aligned_cols=157 Identities=21% Similarity=0.252 Sum_probs=97.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc--cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRA--FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||+|+|+|... +.. ....++|.........+..+..+.+|||||... +.....
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~ 69 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPE-EKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNML 69 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchh-hhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHH
Confidence 689999999999999999998542 111 111234444444444442267899999999532 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc--
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC-- 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~-- 176 (371)
..+.++|++++|+|+++.........+..+.. .+. .|+++|+||+|.... ......... +...+...
T Consensus 70 ~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~-~~~---~~~ilv~NK~Dl~~~--~~~~~~~~~-----~~~~~~~~~~ 138 (164)
T cd04171 70 AGAGGIDLVLLVVAADEGIMPQTREHLEILEL-LGI---KRGLVVLTKADLVDE--DWLELVEEE-----IRELLAGTFL 138 (164)
T ss_pred hhhhcCCEEEEEEECCCCccHhHHHHHHHHHH-hCC---CcEEEEEECccccCH--HHHHHHHHH-----HHHHHHhcCc
Confidence 34567899999999985444444444444332 232 389999999997644 222222221 33344331
Q ss_pred -CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 -DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 -~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+..++ ..|++++.|+++|++.+..
T Consensus 139 ~~~~~~------~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 139 ADAPIF------PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred CCCcEE------EEeCCCCcCHHHHHHHHhh
Confidence 22333 3677888999999988753
No 21
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.74 E-value=6.4e-17 Score=137.29 Aligned_cols=163 Identities=21% Similarity=0.276 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|++|+|||||+|.++|......... ...+........ ...+..+.+|||||+.+.... ....+......
T Consensus 4 ~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~liDtpG~~~~~~~---~~~~~~~~~~~ 78 (168)
T cd04163 4 GFVAIVGRPNVGKSTLLNALVGQKISIVSPK-PQTTRNRIRGIY-TDDDAQIIFVDTPGIHKPKKK---LGERMVKAAWS 78 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCceEeccCC-CCceeceEEEEE-EcCCeEEEEEECCCCCcchHH---HHHHHHHHHHH
Confidence 6899999999999999999999875322211 122222222222 224568899999999864322 11223334444
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-C
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-N 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-~ 178 (371)
....+|++++|+|++.+++.....++..+... . .|+++|+||+|..... ..+.+... .+....+ .
T Consensus 79 ~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~-~~~~~~~~--------~~~~~~~~~ 144 (168)
T cd04163 79 ALKDVDLVLFVVDASEPIGEGDEFILELLKKS---K--TPVILVLNKIDLVKDK-EDLLPLLE--------KLKELGPFA 144 (168)
T ss_pred HHHhCCEEEEEEECCCccCchHHHHHHHHHHh---C--CCEEEEEEchhccccH-HHHHHHHH--------HHHhccCCC
Confidence 56788999999999976666666666666543 1 3999999999987331 33333322 2222111 2
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+++ ..|++.+.++.+|++.+.+.
T Consensus 145 ~~~------~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 145 EIF------PISALKGENVDELLEEIVKY 167 (168)
T ss_pred ceE------EEEeccCCChHHHHHHHHhh
Confidence 223 35666789999999988654
No 22
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=1e-16 Score=137.28 Aligned_cols=172 Identities=20% Similarity=0.235 Sum_probs=102.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.++|+++|.+|+|||||+|+|+|........ ..+.+.......... .+..+.+|||||+.+..........-......
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSD-IAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccC-CCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 3689999999999999999999876432221 122333332233333 66778999999987653211111110111112
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....++|++++|+|++.+.+......+..+... . .|+++|+||+|.........+.+... +...+...+.
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~ 149 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEKDSKTMKEFKKE-----IRRKLPFLDY 149 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCccHHHHHHHHHH-----HHhhcccccC
Confidence 335678999999999877776655554444321 2 49999999999875521222222221 2222221111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
......|++.+.++.++++.+..+
T Consensus 150 -----~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 150 -----APIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred -----CceEEEeccCCCCHHHHHHHHHHh
Confidence 122346788889999999887654
No 23
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.74 E-value=6.3e-17 Score=136.54 Aligned_cols=155 Identities=20% Similarity=0.253 Sum_probs=103.3
Q ss_pred EEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcC
Q 040649 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKD 102 (371)
Q Consensus 23 ~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~ 102 (371)
+++|.+|+|||||+|.|++....... ...++|.........+ .+..+.++||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 57999999999999999987642221 2234454444444554 678899999999987422 233334444444556
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-ceE
Q 040649 103 GIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-RWV 181 (371)
Q Consensus 103 ~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-r~~ 181 (371)
.+|++++|+|+.++++..+..++..++.. + .|+++|+||+|.... ... ...+...+. +++
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~-~----~piiiv~nK~D~~~~--~~~------------~~~~~~~~~~~~~ 136 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKS-K----KPVILVVNKVDNIKE--EDE------------AAEFYSLGFGEPI 136 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhc-C----CCEEEEEECcccCCh--HHH------------HHHHHhcCCCCeE
Confidence 78999999999877777666666666643 2 499999999998754 211 011122222 333
Q ss_pred eecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 182 LFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 182 ~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..|++++.|+.+|++.+.+.
T Consensus 137 ------~~Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 137 ------PISAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ------EEecccCCCHHHHHHHHHhh
Confidence 36777889999999988654
No 24
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.74 E-value=4.7e-17 Score=154.84 Aligned_cols=183 Identities=21% Similarity=0.227 Sum_probs=129.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|+|++|||||+|+|+|....-.. ...++|.+.....+.+ +++.+.+|||.|+-.-..-.+.+..--....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 3589999999999999999999999873322 2345666666666776 8999999999998753322111100000111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+...+|++++|+|++.+++..|...+..+.+. | +++++|+||||.+..+..+.+.+... +...+...
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~-g----~~~vIvvNKWDl~~~~~~~~~~~k~~-----i~~~l~~l- 323 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEA-G----RGIVIVVNKWDLVEEDEATMEEFKKK-----LRRKLPFL- 323 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHc-C----CCeEEEEEccccCCchhhHHHHHHHH-----HHHHhccc-
Confidence 2234566999999999999999999998888764 2 49999999999987644556655544 45444432
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYT 217 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~ 217 (371)
.|-.....||+++.++..|++.+..+........-+
T Consensus 324 ----~~a~i~~iSA~~~~~i~~l~~~i~~~~~~~~~ri~T 359 (444)
T COG1160 324 ----DFAPIVFISALTGQGLDKLFEAIKEIYECATRRIST 359 (444)
T ss_pred ----cCCeEEEEEecCCCChHHHHHHHHHHHHHhccccCH
Confidence 333344579999999999999999888876553333
No 25
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=1.5e-16 Score=138.12 Aligned_cols=126 Identities=17% Similarity=0.290 Sum_probs=83.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|++|+|||||+|.|+|...........+.|..+..+. . + ..+.+|||||+......... ...+...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~-~~~~liDtpG~~~~~~~~~~-~~~~~~~ 90 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V-N-DGFRLVDLPGYGYAKVSKEE-KEKWQKL 90 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e-C-CcEEEEeCCCCccccCChhH-HHHHHHH
Confidence 3557999999999999999999998752222112233454444332 2 2 36899999998765332211 1222221
Q ss_pred Hh---hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 97 IG---MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~---~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+. .....+|++++|+|++.+++..+...+..+... ..|+++|+||+|....
T Consensus 91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 91 IEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence 11 223456899999999988888887776666542 2499999999998754
No 26
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.73 E-value=4.4e-16 Score=147.51 Aligned_cols=171 Identities=17% Similarity=0.152 Sum_probs=107.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|||.||||||||+|+|++... .....+.+|..+....+.+.++..+.++||||+.........+...+.+.+
T Consensus 159 adVglVG~PNaGKSTLln~ls~a~~--~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhi-- 234 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHI-- 234 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHHcCCC--ccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHh--
Confidence 4689999999999999999998653 222334556655555555545678999999999864333233444444443
Q ss_pred hcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
..++++|+|+|+++.-+..+ ..+...|......-..+|+++|+||+|.... ...... .+.......+.
T Consensus 235 --e~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~--~~~~~~-------~~~~~~~~~~~ 303 (335)
T PRK12299 235 --ERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE--EEEREK-------RAALELAALGG 303 (335)
T ss_pred --hhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc--hhHHHH-------HHHHHHHhcCC
Confidence 45699999999984333333 2334444443221123599999999997654 221110 01222222233
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+++ .||+++.++++|++.+...+...
T Consensus 304 ~i~~------iSAktg~GI~eL~~~L~~~l~~~ 330 (335)
T PRK12299 304 PVFL------ISAVTGEGLDELLRALWELLEEA 330 (335)
T ss_pred CEEE------EEcCCCCCHHHHHHHHHHHHHhh
Confidence 3433 67788899999999998877653
No 27
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.72 E-value=2e-17 Score=144.91 Aligned_cols=168 Identities=20% Similarity=0.243 Sum_probs=110.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC----------------CCCCccceeEEEEeEE-eeCCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS----------------AGSSAITKTCEMKTTV-LKDGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~----------------~~~~~~t~~~~~~~~~-~~~~~~i~liDTPG~~ 80 (371)
+.++|+++|+.|+|||||+++|++....... ....+.|.......+. ...+..+++|||||..
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 3579999999999999999999854421110 0012344444444444 1278899999999954
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+ .... +..+...+|++|+|+|+..++.......+..+... . .|+++|+||+|.. . ..+.+.
T Consensus 82 ~-------f~~~----~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~---~--~p~ivvlNK~D~~-~--~~~~~~ 142 (188)
T PF00009_consen 82 D-------FIKE----MIRGLRQADIAILVVDANDGIQPQTEEHLKILREL---G--IPIIVVLNKMDLI-E--KELEEI 142 (188)
T ss_dssp H-------HHHH----HHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHT---T---SEEEEEETCTSS-H--HHHHHH
T ss_pred c-------eeec----ccceecccccceeeeeccccccccccccccccccc---c--cceEEeeeeccch-h--hhHHHH
Confidence 3 2233 33345567999999999988888888888887654 2 2899999999988 2 445444
Q ss_pred hcccCCchHH-HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLK-EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~-~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+ +. .++...+..-..+.+..+.|+.++.|+..|++.+...++
T Consensus 143 ~~~-----~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 143 IEE-----IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHH-----HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HHH-----HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 443 33 343333221000011123688899999999999988775
No 28
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.72 E-value=3.4e-16 Score=138.75 Aligned_cols=164 Identities=24% Similarity=0.245 Sum_probs=99.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++.++|+|+|++|||||||+|+|++...+... ....|..+......+.+...+.+|||||+.+... ......+...
T Consensus 39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~ 114 (204)
T cd01878 39 SGIPTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRST 114 (204)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHH
Confidence 34579999999999999999999998643221 1223333333344442334899999999865321 1122222222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+ ..+..+|++++|+|++.+.+.... .+...+....... .|+++|+||+|.... .... .....
T Consensus 115 ~-~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~--~~~~------------~~~~~ 177 (204)
T cd01878 115 L-EEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD--EELE------------ERLEA 177 (204)
T ss_pred H-HHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh--HHHH------------HHhhc
Confidence 2 234578999999999865544433 3334444332222 499999999998755 2221 11111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+++ ..|++++.|+.++++.+...
T Consensus 178 ~~~~~~------~~Sa~~~~gi~~l~~~L~~~ 203 (204)
T cd01878 178 GRPDAV------FISAKTGEGLDELLEAIEEL 203 (204)
T ss_pred CCCceE------EEEcCCCCCHHHHHHHHHhh
Confidence 122233 36778889999999987653
No 29
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.72 E-value=6.8e-16 Score=152.57 Aligned_cols=176 Identities=21% Similarity=0.232 Sum_probs=115.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|+|||||+|+|+|........ ..++|.......+.+ ++..+.++||||+............-.....
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSD-IAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecC-CCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 45899999999999999999999987533222 234455444444444 7788999999998764332221111111112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|++.+++..+...+..+... + .|+++|+||+|.... .....+... +...+...
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~-~----~~~ivv~NK~Dl~~~--~~~~~~~~~-----~~~~l~~~- 316 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEA-G----RALVIVVNKWDLVDE--KTMEEFKKE-----LRRRLPFL- 316 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCCCH--HHHHHHHHH-----HHHhcccc-
Confidence 2345677999999999988998888777666542 2 499999999998743 333332221 22222211
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+.+....||+++.++.+|++.+........
T Consensus 317 ----~~~~i~~~SA~~~~gv~~l~~~i~~~~~~~~ 347 (435)
T PRK00093 317 ----DYAPIVFISALTGQGVDKLLEAIDEAYENAN 347 (435)
T ss_pred ----cCCCEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 1222334788899999999999988776543
No 30
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=6.6e-16 Score=152.44 Aligned_cols=178 Identities=23% Similarity=0.262 Sum_probs=115.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|.+|+|||||+|+|+|....... ...++|.......+.. ++..+.+|||||+............-.....
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence 3478999999999999999999998743221 1234444444444444 6778999999998764332211111111112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|+..+++..+...+..+... + .|+++|+||+|.... ....+.+... +...+...+
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~-~----~~iiiv~NK~Dl~~~-~~~~~~~~~~-----~~~~~~~~~ 317 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDLRIAGLILEA-G----KALVIVVNKWDLVKD-EKTREEFKKE-----LRRKLPFLD 317 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc-C----CcEEEEEECcccCCC-HHHHHHHHHH-----HHHhcccCC
Confidence 2345678999999999988998887776666542 2 499999999998722 1334443332 333332211
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+.+....||+++.++.++++.+.........
T Consensus 318 -----~~~vi~~SA~~g~~v~~l~~~i~~~~~~~~~ 348 (429)
T TIGR03594 318 -----FAPIVFISALTGQGVDKLLDAIDEVYENANR 348 (429)
T ss_pred -----CCceEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence 1122347888999999999999988766443
No 31
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.71 E-value=1.6e-16 Score=138.34 Aligned_cols=165 Identities=21% Similarity=0.136 Sum_probs=103.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCC--------------CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES 86 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 86 (371)
+|+|+|.+|+|||||+|+|++......... ..+.|.........+ .+..+.+|||||+.+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~~---- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHEDF---- 75 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHHH----
Confidence 489999999999999999998765432211 012333333333444 5678999999997541
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 87 EYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 87 ~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
......++..+|++++|+|+..+........+..+.. ...|+++|+||+|.... ..+......
T Consensus 76 -------~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-----~~~~i~iv~nK~D~~~~--~~~~~~~~~--- 138 (189)
T cd00881 76 -------SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIARE-----GGLPIIVAINKIDRVGE--EDLEEVLRE--- 138 (189)
T ss_pred -------HHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHH-----CCCCeEEEEECCCCcch--hcHHHHHHH---
Confidence 1122233446799999999987776666666655553 12499999999998854 233222221
Q ss_pred chHHHHHHhcCCc-----e---EeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 167 KPLKEILQLCDNR-----W---VLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 167 ~~l~~~~~~~~~r-----~---~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+...+...+.. . ....+....|++++.|+.++++.+...++
T Consensus 139 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 139 --IKELLGLIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred --HHHHHccccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 33333322210 0 01122244688889999999999887764
No 32
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.71 E-value=3.6e-16 Score=154.30 Aligned_cols=160 Identities=20% Similarity=0.270 Sum_probs=115.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|.|+|...... ...+++|.........+ .+..+.+|||||+... .......+......+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999999774211 22356676676666666 7889999999998643 233445555666666
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-c
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-R 179 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-r 179 (371)
...+|++++|+|+..+++..+..+..+++.. + .|+++|+||+|..... .. ...+ ...+. .
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~-~----~piilVvNK~D~~~~~-~~------------~~~~-~~lg~~~ 136 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKS-G----KPVILVANKIDGKKED-AV------------AAEF-YSLGFGE 136 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHh-C----CCEEEEEECccCCccc-cc------------HHHH-HhcCCCC
Confidence 7788999999999988898888888888753 2 4999999999976441 11 1111 12221 2
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++ ..||.++.|+.+|++.+...+..
T Consensus 137 ~~------~vSa~~g~gv~~ll~~i~~~l~~ 161 (429)
T TIGR03594 137 PI------PISAEHGRGIGDLLDAILELLPE 161 (429)
T ss_pred eE------EEeCCcCCChHHHHHHHHHhcCc
Confidence 33 36788889999999999877654
No 33
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.7e-15 Score=141.49 Aligned_cols=157 Identities=19% Similarity=0.239 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc-----CCCCCccceeEEEEeEEe-eCC--cEEEEEeCCCCCCCCcchHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA-----SAGSSAITKTCEMKTTVL-KDG--QVVNVIDTPGLFDSSAESEYV 89 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~-----~~~~~~~t~~~~~~~~~~-~~~--~~i~liDTPG~~~~~~~~~~~ 89 (371)
-..+++++|.+|.|||||||+|++...... .......|.......... .+| ..++|||||||+|.-. +...
T Consensus 20 ~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vd-ns~~ 98 (366)
T KOG2655|consen 20 FDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVD-NSNC 98 (366)
T ss_pred CceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccccc-cccc
Confidence 347999999999999999999998855322 111111133333333333 122 2789999999998632 2333
Q ss_pred HHHHHHHHhh---------------hc--CCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 90 SKEIAKCIGM---------------AK--DGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 90 ~~ei~~~~~~---------------~~--~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+.-+..++.. .. ..+|++||.++.. +++.+.|...++.+...+ ++|.|+.|.|.+.
T Consensus 99 w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~KaD~lT 172 (366)
T KOG2655|consen 99 WRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIAKADTLT 172 (366)
T ss_pred chhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceeeccccCC
Confidence 3333333321 11 3799999999765 679999998888887642 9999999999998
Q ss_pred CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcch
Q 040649 152 DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTK 188 (371)
Q Consensus 152 ~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~ 188 (371)
. ..+..+... +...+..++.+++.|+....
T Consensus 173 ~--~El~~~K~~-----I~~~i~~~nI~vf~fp~~~~ 202 (366)
T KOG2655|consen 173 K--DELNQFKKR-----IRQDIEEHNIKVFDFPTDES 202 (366)
T ss_pred H--HHHHHHHHH-----HHHHHHHcCcceecCCCCcc
Confidence 8 777766665 78888888999998876643
No 34
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.71 E-value=7.8e-16 Score=149.48 Aligned_cols=167 Identities=19% Similarity=0.173 Sum_probs=107.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
.|+|||.|+||||||+|+|++... .....+.+|..+....+.+.++..++++||||+.........+...+.+.+
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~--kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhi--- 234 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKP--KIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHI--- 234 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCC--ccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHH---
Confidence 799999999999999999998764 222344556666655555534778999999999753322223344444443
Q ss_pred cCCceEEEEEEeCCCC---CC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 101 KDGIHAVLLVFSVRSR---FS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~---~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++++|+|+|++.. -. .....+...|.........+|+++|+||+|+... ... +..+....
T Consensus 235 -er~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~------------l~~l~~~l 300 (424)
T PRK12297 235 -ERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EEN------------LEEFKEKL 300 (424)
T ss_pred -hhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHH------------HHHHHHHh
Confidence 355999999999632 11 1223344455543222234699999999996322 111 22233322
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+..+++ .||.++.|+++|++.+...+....
T Consensus 301 ~~~i~~------iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 301 GPKVFP------ISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CCcEEE------EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 333333 577788999999999998887654
No 35
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.71 E-value=3.2e-16 Score=134.04 Aligned_cols=163 Identities=16% Similarity=0.120 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
++|+|+|++|+|||||+|+|++...... ...+.|........... .+..+.+|||||... +....
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~ 67 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMR 67 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHH
Confidence 3699999999999999999997765222 22334443333333331 367899999999643 11122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH-Hhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL-QLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~-~~~ 176 (371)
......+|++++|+|++++........+..+.. .+ .|+++|+||+|........+...+.. +.... ...
T Consensus 68 ~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~-~~----~p~ivv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~ 137 (168)
T cd01887 68 ARGASLTDIAILVVAADDGVMPQTIEAIKLAKA-AN----VPFIVALNKIDKPNANPERVKNELSE-----LGLQGEDEW 137 (168)
T ss_pred HHHHhhcCEEEEEEECCCCccHHHHHHHHHHHH-cC----CCEEEEEEceecccccHHHHHHHHHH-----hhccccccc
Confidence 233457799999999986655555555555543 22 39999999999764421222221111 00000 011
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..+ .....|+.++.|+.+|++.+..+..
T Consensus 138 ~~~~----~~~~~Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 138 GGDV----QIVPTSAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cCcC----cEEEeecccCCCHHHHHHHHHHhhh
Confidence 1111 1234677888999999999876643
No 36
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.71 E-value=9.6e-16 Score=152.17 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=125.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.||+|||||+|.|+|... .....+++|.+.......+ .+..+.++|.||.++.+.-+ .+|...+-..
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~q--~VgNwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S---~DE~Var~~l 77 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGANQ--KVGNWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYS---EDEKVARDFL 77 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhccCc--eecCCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCC---chHHHHHHHH
Confidence 5799999999999999999999987 4456788998877777777 78889999999999765432 1222222223
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|+++-|+|++ .+...-.-+++.+. +| .|+++++|++|.....+-.+ ....+-+..|.+
T Consensus 78 l~~~~D~ivnVvDAt-nLeRnLyltlQLlE--~g----~p~ilaLNm~D~A~~~Gi~I----------D~~~L~~~LGvP 140 (653)
T COG0370 78 LEGKPDLIVNVVDAT-NLERNLYLTLQLLE--LG----IPMILALNMIDEAKKRGIRI----------DIEKLSKLLGVP 140 (653)
T ss_pred hcCCCCEEEEEcccc-hHHHHHHHHHHHHH--cC----CCeEEEeccHhhHHhcCCcc----------cHHHHHHHhCCC
Confidence 367889999999998 45544444444443 33 39999999999775532222 245566666888
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK 225 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 225 (371)
+++ .+|.++.|+++|+..+......... ++..++-+.++
T Consensus 141 Vv~------tvA~~g~G~~~l~~~i~~~~~~~~~-~~~~~y~~~ie 179 (653)
T COG0370 141 VVP------TVAKRGEGLEELKRAIIELAESKTT-PREVDYGEEIE 179 (653)
T ss_pred EEE------EEeecCCCHHHHHHHHHHhcccccc-ccccccchHHH
Confidence 887 5677889999999999988777655 44444333444
No 37
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.70 E-value=8e-16 Score=145.64 Aligned_cols=167 Identities=20% Similarity=0.228 Sum_probs=103.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|||.+|||||||+|+|++... .....+.+|..+....+.+.+...+.|+||||+.........+...+.+.+
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~--~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhi-- 233 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKP--KIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHI-- 233 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCc--cccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHH--
Confidence 4689999999999999999998753 222233445555555555533478999999999754322222344444443
Q ss_pred hcCCceEEEEEEeCCCC---CCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 100 AKDGIHAVLLVFSVRSR---FSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~---~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++++|+|+|++.. -+-.+ ..+...+.........+|+++|+||+|.... ...... .+.+...
T Consensus 234 --erad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~--------~~~l~~~ 301 (329)
T TIGR02729 234 --ERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAEL--------LKELKKA 301 (329)
T ss_pred --HhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHH--------HHHHHHH
Confidence 345999999999842 11112 2233334433221123599999999998754 323222 2223333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..+++ .||+++.++++|++.+...+
T Consensus 302 ~~~~vi~------iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGKPVFP------ISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCCcEEE------EEccCCcCHHHHHHHHHHHh
Confidence 3333333 67788899999999987654
No 38
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.70 E-value=9e-16 Score=150.93 Aligned_cols=170 Identities=14% Similarity=0.104 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|||.+|||||||+|+|++... .....+.+|.......+.+ .+..++|+||||+.+.......+...+.+.
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akp--kIadypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrh--- 233 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKP--KIADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRH--- 233 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCc--cccccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHH---
Confidence 4789999999999999999998754 2223345565555555555 667899999999976432222333344443
Q ss_pred hcCCceEEEEEEeCCCCC----CHHHHH-HHHHHHHHhC---------CCCCCeEEEEEeCCCCCCCchhhHHHHhcccC
Q 040649 100 AKDGIHAVLLVFSVRSRF----SQEEEA-AVHRLQTLFG---------KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC 165 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~----~~~~~~-~l~~l~~~~~---------~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~ 165 (371)
+..+|++|+|+|++... ...+.. +...|..+.. ....+|+++|+||+|.... ..+.+.+
T Consensus 234 -ieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da--~el~e~l---- 306 (500)
T PRK12296 234 -IERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA--RELAEFV---- 306 (500)
T ss_pred -HHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh--HHHHHHH----
Confidence 34569999999996311 111222 2223333221 1123599999999997643 2222222
Q ss_pred CchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 166 PKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 166 ~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+...+.++++ +|+.++.++.+|+..+..++....
T Consensus 307 ----~~~l~~~g~~Vf~------ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 307 ----RPELEARGWPVFE------VSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred ----HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHhhh
Confidence 2223333334444 577788999999999998887653
No 39
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=5.8e-16 Score=143.32 Aligned_cols=155 Identities=19% Similarity=0.270 Sum_probs=104.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCC------CCccceeEEEEeEEe-eCC--cEEEEEeCCCCCCCCcchHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAG------SSAITKTCEMKTTVL-KDG--QVVNVIDTPGLFDSSAESEYV 89 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~------~~~~t~~~~~~~~~~-~~~--~~i~liDTPG~~~~~~~~~~~ 89 (371)
..+|+|+|++|+|||||+|+|++...+..... ....|.......... .+| ..++|||||||++... +...
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~-~~~~ 82 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNIN-NSDC 82 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCcccccc-chhh
Confidence 36899999999999999999999887544221 112233233222222 134 3699999999998643 3334
Q ss_pred HHHHHHHHhh------------------hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 90 SKEIAKCIGM------------------AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 90 ~~ei~~~~~~------------------~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
+..+..++.. ....+|+++|+++.+ .++...+..+++.+.. . .|+++|+||+|.+
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~----~--v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK----R--VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc----c--CCEEEEEECCCcC
Confidence 4444432211 112589999999887 4688888877777764 2 3999999999998
Q ss_pred CCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcc
Q 040649 151 EDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKT 187 (371)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~ 187 (371)
.. ..+..+... +...+...+.+++.|....
T Consensus 157 ~~--~e~~~~k~~-----i~~~l~~~~i~~~~~~~~~ 186 (276)
T cd01850 157 TP--EELKEFKQR-----IMEDIEEHNIKIYKFPEDE 186 (276)
T ss_pred CH--HHHHHHHHH-----HHHHHHHcCCceECCCCCc
Confidence 65 445544443 7778888888888887643
No 40
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.70 E-value=1.4e-16 Score=141.90 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=119.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+++|.||+|||||||+|++....+. +..++++....+.....++..++++||||+++....+.. +...
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~D~~----~r~~ 110 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDKDAE----HRQL 110 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchhhhHH----HHHH
Confidence 3557889999999999999999996554222 111222222222222236789999999999986443333 4444
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc----------hhhHHHHhcccCC
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN----------EKTLEDYLGLECP 166 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~----------~~~l~~~l~~~~~ 166 (371)
+....+..|++++++++.+|.-..+..++..+.-.... +++++++|.+|...+- ...+.+++.. .-
T Consensus 111 ~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~---~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~-k~ 186 (296)
T COG3596 111 YRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLD---KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEE-KA 186 (296)
T ss_pred HHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccC---ceeEEEEehhhhhccccccccccCCCCHHHHHHHHH-HH
Confidence 44455667999999999988777777777776654332 5999999999987541 1234444432 11
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHH
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNEC 220 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~ 220 (371)
..+..++. +..+....+...+.|++.|...+..+++.+...+....+
T Consensus 187 ~~~~~~~q-------~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~rs~~a~~~ 233 (296)
T COG3596 187 EALGRLFQ-------EVKPVVAVSGRLPWGLKELVRALITALPVEARSPLAARL 233 (296)
T ss_pred HHHHHHHh-------hcCCeEEeccccCccHHHHHHHHHHhCcccccchhhhhh
Confidence 11222222 222222334566799999999999999977665555444
No 41
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.70 E-value=6.7e-16 Score=147.41 Aligned_cols=162 Identities=21% Similarity=0.175 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+++|.+|+|||||+|+|+|...+.. ...+.|.++....+.++++..+.++||||+.... +. .....+...+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l-~~-~lie~f~~tl 263 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDL-PH-ELVAAFRATL 263 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCcccccC-CH-HHHHHHHHHH
Confidence 347899999999999999999999875322 1233444444455555467799999999984321 11 1222233322
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEA-AVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+..+|++|+|+|++++.+..+.. +...+... +. ...|+++|+||+|.... ..+. .... .
T Consensus 264 -e~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~--~~v~------------~~~~-~ 325 (351)
T TIGR03156 264 -EEVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE--PRIE------------RLEE-G 325 (351)
T ss_pred -HHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh--HhHH------------HHHh-C
Confidence 2356789999999998665544432 33344433 31 12499999999997643 2221 1111 0
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+ ...||+++.|+++|++.+...
T Consensus 326 ~~~~------i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 326 YPEA------VFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CCCE------EEEEccCCCCHHHHHHHHHhh
Confidence 1122 336888899999999988654
No 42
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.69 E-value=9e-16 Score=152.80 Aligned_cols=164 Identities=22% Similarity=0.196 Sum_probs=113.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+|+|++|+|||||+|+|+|...... ...+++|.........+ .+..+.+|||||+... .......+....
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~~~v-~~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~ 111 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRREAVV-EDVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQA 111 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCcccc-cCCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHH
Confidence 447899999999999999999998764222 22445666665555555 7788999999998632 122334455555
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|++.+.+..+..+...+... ..|+++|+||+|..... ... ..... .+
T Consensus 112 ~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~~-~~~------------~~~~~-~g 172 (472)
T PRK03003 112 EVAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERGE-ADA------------AALWS-LG 172 (472)
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCccc-hhh------------HHHHh-cC
Confidence 5567788999999999988887777777777642 24999999999975331 111 11111 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ....+||+++.|+.+|++.+...+..
T Consensus 173 ~~-----~~~~iSA~~g~gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 173 LG-----EPHPVSALHGRGVGDLLDAVLAALPE 200 (472)
T ss_pred CC-----CeEEEEcCCCCCcHHHHHHHHhhccc
Confidence 11 11247888999999999999876654
No 43
>PRK09866 hypothetical protein; Provisional
Probab=99.69 E-value=6.5e-14 Score=138.75 Aligned_cols=121 Identities=13% Similarity=0.094 Sum_probs=77.6
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..++++||||+..+.. ....+.+.. ....+|+||||+|++..++..+..+++.+... +.. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~~--~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQ--PHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCccc--hHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 4688999999986421 112233333 46677999999999877888888888888753 321 29999999999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+......+.... .+...+.... +.|....++||+++.++..|++.|..
T Consensus 301 l~dreeddkE~Lle-----~V~~~L~q~~---i~f~eIfPVSAlkG~nid~LLdeI~~ 350 (741)
T PRK09866 301 QQDRNSDDADQVRA-----LISGTLMKGC---ITPQQIFPVSSMWGYLANRARHELAN 350 (741)
T ss_pred CCCcccchHHHHHH-----HHHHHHHhcC---CCCceEEEEeCCCCCCHHHHHHHHHh
Confidence 86432111222211 1222222221 13444556889999999999988764
No 44
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=4.4e-16 Score=134.08 Aligned_cols=162 Identities=20% Similarity=0.200 Sum_probs=94.3
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC-CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcC
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKD 102 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~ 102 (371)
++|++|+|||||+|+|+|...... ...++|..+......+ + +..+.++||||+.+...........+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPKVA--NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcccc--CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 589999999999999999875211 2233444444444444 5 7899999999986432111112222222 244
Q ss_pred CceEEEEEEeCCCCC-----C-HHH-HHHHHHHHHHhCC-----CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 103 GIHAVLLVFSVRSRF-----S-QEE-EAAVHRLQTLFGK-----KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 103 ~~d~vl~v~d~~~~~-----~-~~~-~~~l~~l~~~~~~-----~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
++|++++|+|+..+. . ..+ ..+...+...... ....|+++|+||+|.... ....... ..
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~--~~~~~~~-------~~ 144 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA--EELEEEL-------VR 144 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch--hHHHHHH-------HH
Confidence 679999999998542 2 222 2233333322111 023599999999998755 3332221 01
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
......+..++ ..|+.++.|+.+|++.+..+
T Consensus 145 ~~~~~~~~~~~------~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELALEEGAEVV------PISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred HHhcCCCCCEE------EEehhhhcCHHHHHHHHHhh
Confidence 11122222333 36778889999999987654
No 45
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.69 E-value=1.1e-15 Score=130.51 Aligned_cols=161 Identities=17% Similarity=0.109 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|++|+|||||+|++++........ +.++.......... .....+.++||||... +.....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYL--PTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRN 67 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHH
Confidence 379999999999999999999887643211 11222222222222 1234788999999532 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCC---CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGK---KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~---~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
..+.++|++|+|+|++++-+-. ...++..+....+. ....|+++|.||+|..........+ ...+..
T Consensus 68 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 138 (168)
T cd04119 68 EFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE---------GRLWAE 138 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHH---------HHHHHH
Confidence 4567889999999998543222 23344555544432 1235999999999976321111111 222333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+.+++. .|++++.|+.++++.+.+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l 166 (168)
T cd04119 139 SKGFKYFE------TSACTGEGVNEMFQTLFSSI 166 (168)
T ss_pred HcCCeEEE------EECCCCCCHHHHHHHHHHHH
Confidence 33333433 57778899999999987543
No 46
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=5.3e-16 Score=137.56 Aligned_cols=166 Identities=14% Similarity=0.121 Sum_probs=99.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEee--------------------------CC----
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVLK--------------------------DG---- 68 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~--------------------------~~---- 68 (371)
.+|+++|++|+|||||+.+|+|... ........+.|..+.+..+.+. .+
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence 3799999999999999999998732 2121112233333332222221 02
Q ss_pred --cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 69 --QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-FSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 69 --~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
..++||||||.. . +...+......+|++++|+|++.+ ........+..+.. .+. .|+++|+|
T Consensus 81 ~~~~i~~iDtPG~~-------~----~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~-~~~---~~iiivvN 145 (203)
T cd01888 81 LVRHVSFVDCPGHE-------I----LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEI-MGL---KHIIIVQN 145 (203)
T ss_pred cccEEEEEECCChH-------H----HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHH-cCC---CcEEEEEE
Confidence 678999999942 1 333344445577999999999853 33334445544432 232 37999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|+|.... ......+.. ++..+...... .......||+++.|+++|++.+.+.++.
T Consensus 146 K~Dl~~~--~~~~~~~~~-----i~~~~~~~~~~---~~~i~~vSA~~g~gi~~L~~~l~~~l~~ 200 (203)
T cd01888 146 KIDLVKE--EQALENYEQ-----IKKFVKGTIAE---NAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred chhccCH--HHHHHHHHH-----HHHHHhccccC---CCcEEEEeCCCCCCHHHHHHHHHHhCCC
Confidence 9998754 333322222 33333321100 1112336888899999999999876654
No 47
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.69 E-value=9.3e-16 Score=139.86 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=94.4
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHH
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVS 90 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~ 90 (371)
+|+-+...++|+|.|.||+|||||+++|++... ...+++.+|.......+.. ++..+.+|||||+.|-..... .+.
T Consensus 161 LP~Idp~~pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE 237 (346)
T COG1084 161 LPAIDPDLPTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIE 237 (346)
T ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHH
Confidence 566666778999999999999999999999886 4445556665555555554 667999999999998654332 122
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCC--CCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVR--SRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~--~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+..-.+. .-.++|+|++|.+ ++++-++ ...+..++..|. .|+++|+||+|..+.
T Consensus 238 ~qAi~AL~---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~ 295 (346)
T COG1084 238 RQAILALR---HLAGVILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADE 295 (346)
T ss_pred HHHHHHHH---HhcCeEEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccch
Confidence 22222222 1237899999998 5666554 667788888887 399999999998755
No 48
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.68 E-value=3.4e-16 Score=133.86 Aligned_cols=161 Identities=12% Similarity=0.054 Sum_probs=92.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCC--CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAG--SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||+|.|++......+.. ....|.......+.+ ++..+.++||||... +.....
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 489999999999999999987543211111 112233333334444 678899999999653 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+.++|++++|+|++.+-+. .....++...+.. ....|+++|+||+|.... ....+.... +.......
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~--~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~-----~~~~~~~~ 139 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERF--EESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEV-----FQDKAEEI 139 (167)
T ss_pred HHhCCCCEEEEEEECchHHHH--HHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHH-----hccccccc
Confidence 456788999999998743211 1122233322221 112499999999997644 222211110 11111111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+...+ .....|++++.|++++++++.
T Consensus 140 ~~~~~---~~~~~Sa~~g~gv~e~~~~l~ 165 (167)
T cd04160 140 GRRDC---LVLPVSALEGTGVREGIEWLV 165 (167)
T ss_pred cCCce---EEEEeeCCCCcCHHHHHHHHh
Confidence 11111 122468889999999998875
No 49
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.68 E-value=2.5e-15 Score=149.64 Aligned_cols=175 Identities=15% Similarity=0.188 Sum_probs=112.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|+|||||+|+|+|...... ....++|.......+.+ ++..+.+|||||+....... ...+....+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~-s~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVV-DDVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 357999999999999999999999875322 12344454444444555 77788999999985321111 111222221
Q ss_pred --hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 --GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 --~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++++|+|++.+.+..+...+..+... . .|+++|+||+|+... .....+... +...+..
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~~~--~~~~~~~~~-----i~~~l~~ 353 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA---G--RALVLAFNKWDLVDE--DRRYYLERE-----IDRELAQ 353 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh--hHHHHHHHH-----HHHhccc
Confidence 2345688999999999988888877666655431 2 499999999998753 211111111 1111111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.. +.+....||+++.|+.+|+..+...+.....
T Consensus 354 ~~-----~~~~~~~SAk~g~gv~~lf~~i~~~~~~~~~ 386 (472)
T PRK03003 354 VP-----WAPRVNISAKTGRAVDKLVPALETALESWDT 386 (472)
T ss_pred CC-----CCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 11 1122347899999999999999988876544
No 50
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.68 E-value=2.9e-15 Score=132.25 Aligned_cols=173 Identities=16% Similarity=0.109 Sum_probs=100.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||++.+++...... ..+..+.........+ ++ ..+.++||||....... ...++....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~ 74 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPR 74 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHH
Confidence 3799999999999999999998765322 1111111121122333 44 36789999997653221 122222223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH-
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ- 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~- 174 (371)
..++..+|++|+|+|++++.+-.. ..++..+..... .....|+++|.||+|.........+ .++.+..
T Consensus 75 ~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~---------~~~~~~~~ 145 (198)
T cd04142 75 FRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRH---------VLSVLVRK 145 (198)
T ss_pred HhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHH---------HHHHHHHH
Confidence 344578899999999985433222 223334443321 0122499999999997543111111 1222222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
..+..++ ..||+++.|+.+|+..+...+-.++.
T Consensus 146 ~~~~~~~------e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 146 SWKCGYL------ECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred hcCCcEE------EecCCCCCCHHHHHHHHHHHhhccCC
Confidence 1222333 36888899999999998866665544
No 51
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.68 E-value=2.4e-15 Score=127.76 Aligned_cols=156 Identities=15% Similarity=0.159 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||+|++++...... ..+..+.........+ ++ ..+.++||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 799999999999999999998876332 1222232233333333 33 3588999999432 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+....+.. .|+++|+||+|.........+. ...+....+
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 136 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEE---------GEKKAKELN 136 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHH---------HHHHHHHhC
Confidence 34567899999999985422222 23444444433322 4999999999985331112211 222333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++. .|++++.|+.+|+..+.+.
T Consensus 137 ~~~~~------~Sa~~~~~v~~l~~~i~~~ 160 (161)
T cd01861 137 AMFIE------TSAKAGHNVKELFRKIASA 160 (161)
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHh
Confidence 33333 5677889999999988754
No 52
>PRK04213 GTP-binding protein; Provisional
Probab=99.68 E-value=2.3e-15 Score=133.04 Aligned_cols=169 Identities=20% Similarity=0.222 Sum_probs=96.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH----HHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE----YVSKEI 93 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~----~~~~ei 93 (371)
...+|+++|++|+|||||+|+|+|.... ... .+++|.... .+.+ . .+.+|||||++....... .....+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~~-~~~~t~~~~--~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKKVR-VGK-RPGVTRKPN--HYDW-G--DFILTDLPGFGFMSGVPKEVQEKIKDEI 80 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cCC-CCceeeCce--EEee-c--ceEEEeCCccccccccCHHHHHHHHHHH
Confidence 3478999999999999999999987742 221 223333222 2222 2 689999999865432221 122222
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCC-----------HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFS-----------QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
..++......++++++|+|.+.... ..+..++..+.. .. .|+++|+||+|.........
T Consensus 81 ~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~p~iiv~NK~Dl~~~~~~~~----- 150 (201)
T PRK04213 81 VRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE---LG--IPPIVAVNKMDKIKNRDEVL----- 150 (201)
T ss_pred HHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH---cC--CCeEEEEECccccCcHHHHH-----
Confidence 2223333456789999999863211 122333444332 12 39999999999765411111
Q ss_pred ccCCchHHHHHHhcCC--ceEee-cCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 163 LECPKPLKEILQLCDN--RWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~--r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..+....+. .+..+ ......||+++ |+++|++.+.+.+...
T Consensus 151 -------~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 151 -------DEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred -------HHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 122222221 10000 01234788999 9999999998776653
No 53
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.68 E-value=1.3e-15 Score=130.42 Aligned_cols=161 Identities=16% Similarity=0.122 Sum_probs=97.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
|+++|.+|+|||||++.+++........ .|.......... .+..+.++||||.... ......++
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~----pt~g~~~~~i~~-~~~~l~i~Dt~G~~~~-----------~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVV----PTTGFNSVAIPT-QDAIMELLEIGGSQNL-----------RKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCccccc----ccCCcceEEEee-CCeEEEEEECCCCcch-----------hHHHHHHH
Confidence 7899999999999999999775432211 111111222333 5668999999996431 22223456
Q ss_pred CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceE
Q 040649 102 DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV 181 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~ 181 (371)
.++|+++||+|++++.+-. ....++..........|+++|.||.|.... .......... .+..+....+..++
T Consensus 66 ~~ad~ii~V~D~t~~~s~~--~~~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~---~~~~~~~~~~~~~~ 138 (164)
T cd04162 66 SGSQGLIFVVDSADSERLP--LARQELHQLLQHPPDLPLVVLANKQDLPAA--RSVQEIHKEL---ELEPIARGRRWILQ 138 (164)
T ss_pred hhCCEEEEEEECCCHHHHH--HHHHHHHHHHhCCCCCcEEEEEeCcCCcCC--CCHHHHHHHh---CChhhcCCCceEEE
Confidence 6789999999998543211 122233333321223599999999997654 2333221110 02333333344444
Q ss_pred eecCcchhhHhhHHhHHHHHHHHH
Q 040649 182 LFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 182 ~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+.....|+.+++|+.++++.+.
T Consensus 139 ~~Sa~~~~s~~~~~~v~~~~~~~~ 162 (164)
T cd04162 139 GTSLDDDGSPSRMEAVKDLLSQLI 162 (164)
T ss_pred EeeecCCCChhHHHHHHHHHHHHh
Confidence 455667778999999999998764
No 54
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.68 E-value=1.9e-15 Score=129.33 Aligned_cols=160 Identities=14% Similarity=0.104 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||++.+++........ +..+........... ....+.++||||... +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999999876522211 111111222222221 124688999999532 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........+ ....+....+
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~---------~~~~~~~~~~ 137 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSE---------RGRQLADQLG 137 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHH---------HHHHHHHHcC
Confidence 45678999999999984322111 23344444333222 489999999997644211111 1223333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..++. .|++++.|+.+|++.+...+.
T Consensus 138 ~~~~~------~Sa~~~~gv~~l~~~l~~~~~ 163 (165)
T cd01865 138 FEFFE------ASAKENINVKQVFERLVDIIC 163 (165)
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 33333 577888999999999876654
No 55
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.68 E-value=3.5e-15 Score=126.93 Aligned_cols=163 Identities=20% Similarity=0.309 Sum_probs=98.4
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch---HHHHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES---EYVSKEIAKCIG 98 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~ei~~~~~ 98 (371)
|+++|++|+|||||+|.|++...........+.|..... .. ....+.++||||+.+...+. ......+..++
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL- 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCHHHHHHHHHHHHHHH-
Confidence 799999999999999999954332222222333332222 22 23388999999988753321 11111112222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH--hc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ--LC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~--~~ 176 (371)
.....++++++++|.+.+.+......+.++... + .|+++|+||+|.... ......... +...+. ..
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~-~----~~vi~v~nK~D~~~~--~~~~~~~~~-----~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEEL-G----IPFLVVLTKADKLKK--SELAKALKE-----IKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHc-C----CCEEEEEEchhcCCh--HHHHHHHHH-----HHHHHHhccC
Confidence 233456889999999866666666666776653 2 399999999998754 322222221 233332 22
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++++ .|++++.++.++++.+..+
T Consensus 145 ~~~~~~------~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIIL------FSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEE------EecCCCCCHHHHHHHHHHh
Confidence 234444 4566778999999988764
No 56
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.67 E-value=9.3e-16 Score=134.73 Aligned_cols=166 Identities=18% Similarity=0.209 Sum_probs=98.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC---ccccC--CCCCccceeEEEEeEEee-------------CCcEEEEEeCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR---AFKAS--AGSSAITKTCEMKTTVLK-------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~---~~~~~--~~~~~~t~~~~~~~~~~~-------------~~~~i~liDTPG~~~ 81 (371)
.+|+++|++|+|||||++++++.. .+... ....+.|.........+. .+..+++|||||..+
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~ 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH
Confidence 379999999999999999999741 11110 011233444443333331 256899999999632
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
. ..........+|++++|+|+..+.+..+...+.... ..+ .|+++|+||+|.... ......+
T Consensus 81 -------~----~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~-~~~----~~~iiv~NK~Dl~~~--~~~~~~~ 142 (192)
T cd01889 81 -------L----IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGE-ILC----KKLIVVLNKIDLIPE--EERERKI 142 (192)
T ss_pred -------H----HHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHH-HcC----CCEEEEEECcccCCH--HHHHHHH
Confidence 2 222223345679999999998666555544444332 222 399999999998744 2222222
Q ss_pred cccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 162 GLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ....+...+... +.+++ ..|++++.|+.+|++.+...+..
T Consensus 143 ~~-~~~~l~~~~~~~~~~~~~vi------~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 143 EK-MKKKLQKTLEKTRFKNSPII------PVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HH-HHHHHHHHHHhcCcCCCCEE------EEeccCCCCHHHHHHHHHhcccc
Confidence 21 001122222211 12233 36888899999999999876653
No 57
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.67 E-value=1.4e-15 Score=128.68 Aligned_cols=156 Identities=18% Similarity=0.224 Sum_probs=96.3
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCC
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDG 103 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~ 103 (371)
|+|.+|+|||||+|+++|...... ..+++|..+....+.+ ++..+.+|||||+.+...... ...+....... .+
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQKVG--NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccccc--CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 589999999999999999864322 2244455555555555 567899999999876432211 11122211111 58
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee
Q 040649 104 IHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF 183 (371)
Q Consensus 104 ~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f 183 (371)
+|++++|+|++.+ . .....+..+.. . ..|+++|+||+|.... ..+.. ....+....+..+++
T Consensus 75 ~d~vi~v~d~~~~-~-~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~--~~~~~--------~~~~~~~~~~~~~~~- 136 (158)
T cd01879 75 PDLIVNVVDATNL-E-RNLYLTLQLLE-L----GLPVVVALNMIDEAEK--RGIKI--------DLDKLSELLGVPVVP- 136 (158)
T ss_pred CcEEEEEeeCCcc-h-hHHHHHHHHHH-c----CCCEEEEEehhhhccc--ccchh--------hHHHHHHhhCCCeEE-
Confidence 8999999999842 2 22233333332 1 2499999999998654 22211 122333333444443
Q ss_pred cCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 184 DNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 184 ~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.|+..+.++.++++.+....
T Consensus 137 -----iSa~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 137 -----TSARKGEGIDELKDAIAELA 156 (158)
T ss_pred -----EEccCCCCHHHHHHHHHHHh
Confidence 56777899999999887653
No 58
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.67 E-value=1.4e-15 Score=133.69 Aligned_cols=118 Identities=19% Similarity=0.215 Sum_probs=82.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+|+++|+.++|||||+++|++...... .....+.|.......+.+ .+..++++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 47899999999999999999986411000 001234555554444444 677899999999642
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+...+......+|++++|+|+..++...+...+..+... +. .++|+|+||+|....
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~~---~~iIvviNK~D~~~~ 133 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQV-GV---PYIVVFLNKADMVDD 133 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CcEEEEEeCCCCCCc
Confidence 333334445678999999999877888777777776653 32 148899999998743
No 59
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.67 E-value=1.2e-15 Score=145.58 Aligned_cols=163 Identities=24% Similarity=0.293 Sum_probs=115.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC-CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG-SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+.+|+++|+|++|||||+|+|+|.+. ..++ -+++|.+.-...+.. +|.++.++||.|+-++. +.+.+.=..
T Consensus 215 r~G~kvvIiG~PNvGKSSLLNaL~~~d~--AIVTdI~GTTRDviee~i~i-~G~pv~l~DTAGiRet~---d~VE~iGIe 288 (454)
T COG0486 215 REGLKVVIIGRPNVGKSSLLNALLGRDR--AIVTDIAGTTRDVIEEDINL-NGIPVRLVDTAGIRETD---DVVERIGIE 288 (454)
T ss_pred hcCceEEEECCCCCcHHHHHHHHhcCCc--eEecCCCCCccceEEEEEEE-CCEEEEEEecCCcccCc---cHHHHHHHH
Confidence 4578999999999999999999999987 3333 345566666666666 99999999999999753 333333333
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
........+|.+|||+|++.+.+..+...+. .... .+|+++|.||.|+.... .... + .+..
T Consensus 289 Rs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~--~~~~i~v~NK~DL~~~~--~~~~---------~-~~~~- 349 (454)
T COG0486 289 RAKKAIEEADLVLFVLDASQPLDKEDLALIE----LLPK--KKPIIVVLNKADLVSKI--ELES---------E-KLAN- 349 (454)
T ss_pred HHHHHHHhCCEEEEEEeCCCCCchhhHHHHH----hccc--CCCEEEEEechhccccc--ccch---------h-hccC-
Confidence 4445567789999999999777777777666 1222 24999999999988661 1110 1 0110
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..+ ...|++++.|++.|.+.+...+...
T Consensus 350 -~~~~------i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 -GDAI------ISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred -CCce------EEEEecCccCHHHHHHHHHHHHhhc
Confidence 1112 2368888999999999999887765
No 60
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.67 E-value=1.1e-15 Score=131.54 Aligned_cols=158 Identities=18% Similarity=0.143 Sum_probs=95.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++++.+... .. ...|.........+ .+..+.++||||.... .......
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~~-----------~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEF-MQ----PIPTIGFNVETVEY-KNLKFTIWDVGGKHKL-----------RPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCC-CC----cCCcCceeEEEEEE-CCEEEEEEECCCChhc-----------chHHHHH
Confidence 489999999999999999998743 21 12233233333444 6678999999996532 1223334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH---h
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ---L 175 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~---~ 175 (371)
+.++|+++||+|++++-+-. ....++...+... ...|+++|+||.|.... .+.++. ..++. .
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~~~~~~~ 130 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVS--EAHSELAKLLTEKELRDALLLIFANKQDVAGA--LSVEEM---------TELLSLHKL 130 (169)
T ss_pred hccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcChhhCCCCEEEEEeCcCcccC--CCHHHH---------HHHhCCccc
Confidence 56789999999998432111 1222333332211 12499999999997543 222221 11211 1
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..+.+.| ...||+++.|+.++++++.+.+..+
T Consensus 131 ~~~~~~~~---~~~Sa~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 131 CCGRSWYI---QGCDARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred cCCCcEEE---EeCcCCCCCCHHHHHHHHHHHHhhc
Confidence 11122222 1358899999999999998766654
No 61
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.67 E-value=2.7e-15 Score=128.65 Aligned_cols=160 Identities=17% Similarity=0.129 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++.+++........ +..+.......+.+ ++ ..+.++||||... +...
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~ 68 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--STIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTI 68 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccc--cCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHH
Confidence 3789999999999999999999876532211 11112222222333 33 3678999999432 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-.. ..++..+....... .|+++|.||+|.........+ ....+...
T Consensus 69 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T cd01867 69 TTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKE---------EGEALADE 137 (167)
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHH---------HHHHHHHH
Confidence 2344567899999999974432222 22333344332222 499999999998743211211 12334443
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++ ..|++++.++.+++..+.+.+.
T Consensus 138 ~~~~~~------~~Sa~~~~~v~~~~~~i~~~~~ 165 (167)
T cd01867 138 YGIKFL------ETSAKANINVEEAFFTLAKDIK 165 (167)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 333333 3677788999999998876553
No 62
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.67 E-value=3.9e-15 Score=126.64 Aligned_cols=159 Identities=18% Similarity=0.184 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||++.+++...... .....+.........+ ++ ..+.++||||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 3799999999999999999998775222 1122222222223333 33 3688999999432 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+... ..++..+....+.. .|+++|+||+|.........+ ....+...+
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~~~~~~---------~~~~~~~~~ 135 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQRQVSRE---------EAEAFAEEH 135 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccccCCCHH---------HHHHHHHHc
Confidence 444567899999999985433322 22333333333223 499999999997643111111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++. .|+.++.|+.++++.+...+.
T Consensus 136 ~~~~~e------~Sa~~~~~i~~l~~~i~~~~~ 162 (164)
T smart00175 136 GLPFFE------TSAKTNTNVEEAFEELAREIL 162 (164)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 544443 566678999999999887653
No 63
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.67 E-value=2.1e-15 Score=149.06 Aligned_cols=158 Identities=20% Similarity=0.243 Sum_probs=110.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+++|.+|+|||||+|.|+|...... ....++|.........+ .+..+.+|||||+.+.. ......+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v-~~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIV-ADTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-CCCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 5799999999999999999999875222 22345666666666666 77899999999998632 1233444454555
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
++..+|++|||+|++.+++..+..+..+++.. + .|+++|+||+|.... .... .... ..+.
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-~----~piilv~NK~D~~~~-~~~~------------~~~~-~lg~- 136 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-N----KPVILVVNKVDGPDE-EADA------------YEFY-SLGL- 136 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CcEEEEEECccCccc-hhhH------------HHHH-hcCC-
Confidence 66788999999999988888888887877764 2 499999999995432 0111 1111 1121
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
......|+.++.|+.+|++.+..
T Consensus 137 ----~~~~~iSa~~g~gv~~l~~~I~~ 159 (435)
T PRK00093 137 ----GEPYPISAEHGRGIGDLLDAILE 159 (435)
T ss_pred ----CCCEEEEeeCCCCHHHHHHHHHh
Confidence 11223577788999999998876
No 64
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.67 E-value=2e-14 Score=149.40 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=107.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|.|+|..... ....++|.+.....+.+ ++..+.++||||.++...... ...++......
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~ 80 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGARQRV--GNWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHHH
Confidence 689999999999999999999987632 33466776655555555 677899999999987543111 11122222222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|+++ +.. .......+.+. + .|+++|+||+|..+. ..... .++.+....+.
T Consensus 81 l~~~~aD~vI~VvDat~-ler-~l~l~~ql~e~-g----iPvIvVlNK~Dl~~~--~~i~i--------d~~~L~~~LG~ 143 (772)
T PRK09554 81 ILSGDADLLINVVDASN-LER-NLYLTLQLLEL-G----IPCIVALNMLDIAEK--QNIRI--------DIDALSARLGC 143 (772)
T ss_pred HhccCCCEEEEEecCCc-chh-hHHHHHHHHHc-C----CCEEEEEEchhhhhc--cCcHH--------HHHHHHHHhCC
Confidence 23457899999999984 332 22333344432 2 499999999997644 22211 13334444565
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++++ .|+.++.|+++|++.+.....
T Consensus 144 pVvp------iSA~~g~GIdeL~~~I~~~~~ 168 (772)
T PRK09554 144 PVIP------LVSTRGRGIEALKLAIDRHQA 168 (772)
T ss_pred CEEE------EEeecCCCHHHHHHHHHHhhh
Confidence 6665 566678999999999987764
No 65
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.67 E-value=2.4e-15 Score=128.23 Aligned_cols=157 Identities=18% Similarity=0.095 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|.+|+|||||++.+++....+......+.+ ........ .....+.++||||... +.....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 67 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALT--LYKHNAKFEGKTILVDFWDTAGQER-----------FQTMHA 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeE--EEEEEEEECCEEEEEEEEeCCCchh-----------hhhhhH
Confidence 379999999999999999998766432211111111 11112222 1233678999999542 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++.++|++|+|+|++++.+-.+ ..++..+....+ . .|+++|+||+|.... . ..+ ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~p~ivv~nK~Dl~~~--~-~~~---------~~~~~~~~~ 132 (161)
T cd04124 68 SYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-E--IPCIVVANKIDLDPS--V-TQK---------KFNFAEKHN 132 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEECccCchh--H-HHH---------HHHHHHHcC
Confidence 45678899999999985544332 344555554322 2 499999999996422 1 110 112222223
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+++ ..|++++.|+.++++.+...+..
T Consensus 133 ~~~~------~~Sa~~~~gv~~l~~~l~~~~~~ 159 (161)
T cd04124 133 LPLY------YVSAADGTNVVKLFQDAIKLAVS 159 (161)
T ss_pred CeEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2333 25788899999999998765543
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.67 E-value=3.8e-15 Score=126.75 Aligned_cols=159 Identities=19% Similarity=0.141 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|++++...........+.+ .......+ ..+..+.+|||||... +.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAA--FLTQTVNLDDTTVKFEIWDTAGQER-----------YRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcccee--EEEEEEEECCEEEEEEEEeCCchHH-----------HHHHHH
Confidence 589999999999999999999887643211111111 11122222 1234688999999421 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++++|+|++++-+-. ...++..+....... .|+++|.||+|.......... ....+....+
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 137 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTE---------EAQEYADENG 137 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHH---------HHHHHHHHcC
Confidence 4456789999999997432211 234445555544333 489999999997633111221 1233444444
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..++ ..|++++.|+.++++.+...+
T Consensus 138 ~~~~------~~Sa~~~~~v~~l~~~l~~~l 162 (163)
T cd01860 138 LLFF------ETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred CEEE------EEECCCCCCHHHHHHHHHHHh
Confidence 3333 357778899999999987654
No 67
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.66 E-value=3.5e-15 Score=127.62 Aligned_cols=159 Identities=17% Similarity=0.163 Sum_probs=95.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||++.+++...... ..+..+.......... .+ ..+.++||||... +....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQER-----------FRTIT 68 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHHH
Confidence 6899999999999999999998765322 1122222222223333 33 3678999999432 22222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++++-+-.. ..++..+....... .|+++|.||+|.......... ....+....
T Consensus 69 ~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 137 (166)
T cd01869 69 SSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYS---------EAQEFADEL 137 (166)
T ss_pred HHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHH---------HHHHHHHHc
Confidence 344567899999999984322111 22333343332222 499999999997644111111 123333433
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++. .|++++.|+.+++..+...+.
T Consensus 138 ~~~~~~------~Sa~~~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 138 GIPFLE------TSAKNATNVEQAFMTMAREIK 164 (166)
T ss_pred CCeEEE------EECCCCcCHHHHHHHHHHHHH
Confidence 444443 577788999999998876553
No 68
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.66 E-value=1.5e-15 Score=130.97 Aligned_cols=155 Identities=18% Similarity=0.237 Sum_probs=92.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|++|+|||||++++++..... . ..|.........+ ++..+.++||||... +...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~~~~~--~---~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~ 74 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGEDIDT--I---SPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPY 74 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccCCCCC--c---CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 345799999999999999999999874321 1 1122222233334 567889999999542 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++.+-+-.. ...++...+.. ....|+++|+||+|.... ...++ +...+.
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~---------~~~~~~ 141 (173)
T cd04154 75 WRNYFESTDALIWVVDSSDRLRLDD--CKRELKELLQEERLAGATLLILANKQDLPGA--LSEEE---------IREALE 141 (173)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcccccC--CCHHH---------HHHHhC
Confidence 3344668899999999985422111 11222222211 122499999999997644 21111 122221
Q ss_pred hc---CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 175 LC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 175 ~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.. ...+.. ...||+++.|+.++++.+.
T Consensus 142 ~~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~ 171 (173)
T cd04154 142 LDKISSHHWRI----QPCSAVTGEGLLQGIDWLV 171 (173)
T ss_pred ccccCCCceEE----EeccCCCCcCHHHHHHHHh
Confidence 11 111112 2468889999999998864
No 69
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.66 E-value=1.3e-15 Score=140.80 Aligned_cols=154 Identities=21% Similarity=0.289 Sum_probs=92.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCC------CCccceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG------SSAITKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~ 90 (371)
.+|+|+|.+|+|||||||+|++......... ....+........... ++ ..++|||||||++. ..+...+
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~-i~n~~~~ 83 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDN-IDNSDCW 83 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSS-STHCHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCcccc-ccchhhh
Confidence 6899999999999999999999876544210 1111222222222221 22 37899999999975 3334444
Q ss_pred HHHHHHHhhh-----------------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIAKCIGMA-----------------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~~~~~~~-----------------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+..++... -..+|++||+++.+ +++.+.|...++.|... .++|.|+.|+|.+..
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKR------VNVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTT------SEEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhccc------ccEEeEEecccccCH
Confidence 4444444211 24689999999986 67999998888777654 399999999999987
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcc
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKT 187 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~ 187 (371)
..+..+... +..-+...+.+++.|....
T Consensus 158 --~el~~~k~~-----i~~~l~~~~I~~f~f~~~~ 185 (281)
T PF00735_consen 158 --EELQAFKQR-----IREDLEENNIKIFDFPEDD 185 (281)
T ss_dssp --HHHHHHHHH-----HHHHHHHTT--S-------
T ss_pred --HHHHHHHHH-----HHHHHHHcCceeecccccc
Confidence 777766655 7778888888888776553
No 70
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.66 E-value=5.9e-15 Score=145.63 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=102.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+.+|+++|.+|+|||||+|+|+|....... ...++|.......+.+ ++..+.++||||+.++. ..+...-....
T Consensus 214 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~ 288 (449)
T PRK05291 214 EGLKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERS 288 (449)
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHH
Confidence 3478999999999999999999997642221 1234454444444555 77889999999987532 11111111222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
...+..+|++++|+|++++.+..+...+.. .. ..|+++|+||+|.... .... ...+
T Consensus 289 ~~~~~~aD~il~VvD~s~~~s~~~~~~l~~----~~---~~piiiV~NK~DL~~~--~~~~---------------~~~~ 344 (449)
T PRK05291 289 REAIEEADLVLLVLDASEPLTEEDDEILEE----LK---DKPVIVVLNKADLTGE--IDLE---------------EENG 344 (449)
T ss_pred HHHHHhCCEEEEEecCCCCCChhHHHHHHh----cC---CCCcEEEEEhhhcccc--chhh---------------hccC
Confidence 234567899999999987766554433322 11 2499999999997644 1111 1111
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..++ ..|++++.|+++|++.+...+..
T Consensus 345 ~~~i------~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 345 KPVI------RISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred CceE------EEEeeCCCCHHHHHHHHHHHHhh
Confidence 2223 36788889999999999988764
No 71
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.66 E-value=3.5e-15 Score=128.08 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=95.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||++.+++........ ...+........... ....+.++||||... +....
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 70 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITIDGKQIKLQIWDTAGQES-----------FRSIT 70 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHH
Confidence 3689999999999999999999876533221 111222222222221 224788999999321 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
......+|++|+|+|++++-+-.. ..++..+....... .|+++|.||.|..........+ ...+....
T Consensus 71 ~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 139 (168)
T cd01866 71 RSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEE---------GEAFAKEH 139 (168)
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHH---------HHHHHHHc
Confidence 445567899999999984322222 22333343332223 3999999999976432111211 22333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++ ..|+..+.|+.+++..+...+.
T Consensus 140 ~~~~~------e~Sa~~~~~i~~~~~~~~~~~~ 166 (168)
T cd01866 140 GLIFM------ETSAKTASNVEEAFINTAKEIY 166 (168)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 33333 3677788999999988876653
No 72
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.66 E-value=2.4e-15 Score=127.92 Aligned_cols=157 Identities=18% Similarity=0.151 Sum_probs=94.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+|+|++|+|||||++.+++........ ...+........... ....+.++||||... +.....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~ 67 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTR 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHH
Confidence 379999999999999999999876532211 112222222222231 124678999999532 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++.+-.. ..++..++...... .|+++|+||+|.......... ....+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 136 (161)
T cd04113 68 SYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQREVTFL---------EASRFAQENG 136 (161)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhccCCHH---------HHHHHHHHcC
Confidence 44567899999999985433222 23444444443333 399999999997643111111 1233444334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..++. .|++++.|+.++++.+..
T Consensus 137 ~~~~~------~Sa~~~~~i~~~~~~~~~ 159 (161)
T cd04113 137 LLFLE------TSALTGENVEEAFLKCAR 159 (161)
T ss_pred CEEEE------EECCCCCCHHHHHHHHHH
Confidence 33333 577788999999998764
No 73
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.66 E-value=4.2e-15 Score=127.26 Aligned_cols=156 Identities=15% Similarity=0.179 Sum_probs=93.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.+|+++|++|+|||||++.+++...... .+.|..... ..... ++ ..+.++||||... +..
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 66 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMAD----CPHTIGVEFGTRIIEV-NGQKIKLQIWDTAGQER-----------FRA 66 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC----CCcccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 5899999999999999999997754222 111222222 22223 33 3678999999432 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++|+|+|++++-+-.. ..++..+....... .|+++|.||+|.......+.+ ....+..
T Consensus 67 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~~~~~~---------~~~~~~~ 135 (166)
T cd04122 67 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQRDVTYE---------EAKQFAD 135 (166)
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCcCHH---------HHHHHHH
Confidence 33445678899999999985432221 22333333332222 499999999997644211111 1233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+..++ ..||+++.|+.+++..+...+
T Consensus 136 ~~~~~~~------e~Sa~~~~~i~e~f~~l~~~~ 163 (166)
T cd04122 136 ENGLLFL------ECSAKTGENVEDAFLETAKKI 163 (166)
T ss_pred HcCCEEE------EEECCCCCCHHHHHHHHHHHH
Confidence 3333333 367788899999988776544
No 74
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.66 E-value=5.2e-15 Score=125.97 Aligned_cols=159 Identities=21% Similarity=0.164 Sum_probs=93.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++++++...... . .+.+.......... ++ ..+.++||||..+. ...
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 66 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTD-Y--DPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SAM 66 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCcc-c--CCCccceEEEEEEE-CCEEEEEEEEECCCCcch-----------hHH
Confidence 47899999999999999999998654221 1 11111111112223 33 36789999996542 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|.......... ....+...
T Consensus 67 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~piiiv~NK~Dl~~~~~~~~~---------~~~~~~~~ 136 (164)
T cd04145 67 REQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDR-DEFPMILVGNKADLEHQRKVSRE---------EGQELARK 136 (164)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-CCCCEEEEeeCccccccceecHH---------HHHHHHHH
Confidence 2334556799999999984332221 2233333333221 12499999999997643111111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..++ ..||+++.|+.++++.+...+
T Consensus 137 ~~~~~~------~~Sa~~~~~i~~l~~~l~~~~ 163 (164)
T cd04145 137 LKIPYI------ETSAKDRLNVDKAFHDLVRVI 163 (164)
T ss_pred cCCcEE------EeeCCCCCCHHHHHHHHHHhh
Confidence 333333 367788899999999887543
No 75
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=5e-15 Score=126.57 Aligned_cols=158 Identities=15% Similarity=0.157 Sum_probs=95.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++++.+........ ...+.......+.+ ++ ..+.++||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQG--NTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccCC--CccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence 4789999999999999999998765432211 11122223333333 33 3688999999421 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-.. ..++..+....... .|+++|+||+|.......... ....+...
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFE---------EACTLAEK 137 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 3344567899999999985433222 34555554433323 389999999997644211111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+.. . ....|++++.|+.+++..+..
T Consensus 138 ~~~~-~----~~e~Sa~~~~~v~~~~~~l~~ 163 (165)
T cd01864 138 NGML-A----VLETSAKESQNVEEAFLLMAT 163 (165)
T ss_pred cCCc-E----EEEEECCCCCCHHHHHHHHHH
Confidence 2221 1 123678888999999988764
No 76
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=5.3e-15 Score=129.83 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||++.+++........ ..............+ ++ ..+.||||||... +.....
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~~~~ 68 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNF-IATVGIDFRNKVVTV-DGVKVKLQIWDTAGQER-----------FRSVTH 68 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCc-CCcccceeEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence 79999999999999999999876532111 111111111112222 32 4688999999321 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.++|++|+|+|++++-+-.. ..++..+....... .|+++|+||+|.......... ....+....+
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~---------~~~~l~~~~~ 137 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKRE---------DGERLAKEYG 137 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHH---------HHHHHHHHcC
Confidence 44667899999999985432221 33455555544333 399999999997643111111 1233444444
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+++. .|++++.|+.+|+..+...+...
T Consensus 138 ~~~~e------~Sa~~~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 138 VPFME------TSAKTGLNVELAFTAVAKELKHR 165 (191)
T ss_pred CeEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 33333 57788899999999998777654
No 77
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.65 E-value=5.5e-15 Score=126.43 Aligned_cols=160 Identities=18% Similarity=0.152 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.+|+|||||++.+++...........+ ........... ....+.++||||.... ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence 5899999999999999999998765322111111 11111111111 2346889999997542 111223
Q ss_pred hcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC-CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK-IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+.++|++++|+|++++-+-.. ..++..+....+.. ...|+++|.||+|........... ...+....+
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~---------~~~~~~~~~ 139 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNE---------GAACATEWN 139 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHH---------HHHHHHHhC
Confidence 4557799999999985444332 34455566554322 234999999999976431111110 112222222
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++ ..||+++.|+.++++.|.++
T Consensus 140 ~~~~------e~SA~~g~~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFM------ETSAKTNHNVQELFQELLNL 163 (165)
T ss_pred CcEE------EeecCCCCCHHHHHHHHHhc
Confidence 2333 36888899999999988654
No 78
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.65 E-value=3.8e-15 Score=127.75 Aligned_cols=156 Identities=17% Similarity=0.100 Sum_probs=94.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeE--Ee-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTT--VL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~--~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+|+++|++|||||||+++++....... ...|........ .. .....+.++||||...... ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence 799999999999999999986543221 112222222222 11 1234788999999653211 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++|+|+|++++.+-.. ..++..+....+ ..|+++|.||+|.... .... ....+....
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~--~~~~---------~~~~~~~~~ 132 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR--KVKA---------KQITFHRKK 132 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc--cCCH---------HHHHHHHHc
Confidence 223567899999999985433222 234455555443 2499999999997632 1100 111222222
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..++ ..||+++.|+.++++.+...+...
T Consensus 133 ~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~~ 161 (166)
T cd00877 133 NLQYY------EISAKSNYNFEKPFLWLARKLLGN 161 (166)
T ss_pred CCEEE------EEeCCCCCChHHHHHHHHHHHHhc
Confidence 22333 368888999999999998776543
No 79
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.65 E-value=5e-15 Score=126.42 Aligned_cols=157 Identities=17% Similarity=0.161 Sum_probs=94.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||+|.+++...... ..+..+.......... ++ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 6899999999999999999998775322 1122222222223333 33 3678999999432 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..++++|+|+|++++.+-.+ ..++..+....... .|+++|+||+|.........++ ...+....
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 138 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEE---------AKAFAEKN 138 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHH---------HHHHHHHc
Confidence 344567899999999984333222 22344444433322 4999999999976431111111 22333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+..++ ..|++++.|+.++++.+...
T Consensus 139 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 163 (165)
T cd01868 139 GLSFI------ETSALDGTNVEEAFKQLLTE 163 (165)
T ss_pred CCEEE------EEECCCCCCHHHHHHHHHHH
Confidence 33333 35777889999999987654
No 80
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.65 E-value=4.8e-15 Score=154.33 Aligned_cols=163 Identities=21% Similarity=0.172 Sum_probs=113.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|++|+|||||+|.|+|...... ...+++|.........+ .+..+.+|||||+.... ......+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv-~~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVV-EDTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence 46899999999999999999998764222 22355666665555555 77889999999987421 123344555555
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.++..+|++|+|+|++.+++..+..+...++.. ..|+++|+||+|.... ... .......--.
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~--~~~-----------~~~~~~lg~~ 411 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS--EYD-----------AAEFWKLGLG 411 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc--hhh-----------HHHHHHcCCC
Confidence 667788999999999988888887777777642 2499999999997533 111 1111111011
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+ ...||+++.|+.+|++.+...+..
T Consensus 412 ~~------~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 412 EP------YPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred Ce------EEEECCCCCCchHHHHHHHHhccc
Confidence 22 236888999999999999877654
No 81
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.65 E-value=8.5e-15 Score=124.09 Aligned_cols=156 Identities=17% Similarity=0.163 Sum_probs=91.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||+|++++........ +++.......... ++ ..+.++||||... +....
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l~ 66 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYD---PTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------YSAMR 66 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcC---CcchheEEEEEEE-CCEEEEEEEEECCCCcc-----------hHHHH
Confidence 579999999999999999999876432211 1111111122223 33 3477899999543 12222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.+ ..++..+..... ....|+++|+||+|..... .... ....+....
T Consensus 67 ~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~-~~~~piivv~nK~Dl~~~~-~~~~---------~~~~~~~~~ 135 (162)
T cd04138 67 DQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKD-SDDVPMVLVGNKCDLAART-VSSR---------QGQDLAKSY 135 (162)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccce-ecHH---------HHHHHHHHh
Confidence 334556799999999884322222 223334443322 1224999999999976431 1111 122333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+..++. .|++++.|++++++.+...
T Consensus 136 ~~~~~~------~Sa~~~~gi~~l~~~l~~~ 160 (162)
T cd04138 136 GIPYIE------TSAKTRQGVEEAFYTLVRE 160 (162)
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHH
Confidence 333333 6788889999999988654
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.64 E-value=6.9e-15 Score=125.36 Aligned_cols=158 Identities=20% Similarity=0.148 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||+|++++........ + ++.......... ++ ..+.++||||..... ....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~--~-t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~-----------~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYD--P-TIEDSYRKQIEI-DGEVCLLDILDTAGQEEFS-----------AMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccC--C-chhhhEEEEEEE-CCEEEEEEEEECCCcccch-----------HHHH
Confidence 79999999999999999999876432211 1 111111122222 33 467799999965421 1122
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..+...+...... ...|+++|.||+|.........+ ....+....+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~---------~~~~~~~~~~ 136 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTE---------EGKELARQWG 136 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHH---------HHHHHHHHcC
Confidence 33456799999999985322222 2223333333221 12499999999997643111111 1233344334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+++ ..||+++.|+.++++.+.+.+.
T Consensus 137 ~~~~------~~Sa~~~~~i~~l~~~l~~~~~ 162 (164)
T smart00173 137 CPFL------ETSAKERVNVDEAFYDLVREIR 162 (164)
T ss_pred CEEE------EeecCCCCCHHHHHHHHHHHHh
Confidence 3443 3677788999999998876544
No 83
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.64 E-value=9.4e-15 Score=143.52 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=82.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
++.+|+++|++|+|||||+|+|++...... ...+++|.......+.+ ++..+.++||||+.+.. ......-....
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~aiv-s~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~~~ 276 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDRAIV-SDIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIEKS 276 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHHHH
Confidence 457999999999999999999998764212 12344555555555555 78889999999987542 11111111222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
..++..+|++++|+|++.+.+..+. ++..+.. .. .|+++|+||+|...
T Consensus 277 ~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 277 FKAIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKI 324 (442)
T ss_pred HHHHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCC
Confidence 3455678999999999877765554 3333321 12 49999999999753
No 84
>PRK11058 GTPase HflX; Provisional
Probab=99.64 E-value=5.6e-15 Score=144.31 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
+.|+|+|.+|+|||||+|+|+|...+.. ...+.|.+.....+.+.+...+.++||||+... . .......+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~v~--~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-l-p~~lve~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVYAA--DQLFATLDPTLRRIDVADVGETVLADTVGFIRH-L-PHDLVAAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeec--cCCCCCcCCceEEEEeCCCCeEEEEecCccccc-C-CHHHHHHHHHH-HH
Confidence 5899999999999999999999876422 223445545444555534448899999998542 1 12223334333 33
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....+|++|+|+|++++.+...... ...+....... .|+++|+||+|..... . .... .. ..+.
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~~--~--~~~~--------~~--~~~~ 336 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDDF--E--PRID--------RD--EENK 336 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCch--h--HHHH--------HH--hcCC
Confidence 4568899999999986655444332 33344432222 4999999999976431 1 0010 00 1111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++ ....||+++.|+++|++.+...+..
T Consensus 337 ~~-----~v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 337 PI-----RVWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred Cc-----eEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 11 1236888999999999999987753
No 85
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.64 E-value=1.7e-14 Score=126.25 Aligned_cols=164 Identities=13% Similarity=0.136 Sum_probs=103.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|..|+|||||+..+.+... .... .+..+.......+.. ++ ..+.++||||... +...
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~~~~-~~~~-~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l 71 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQDGST-ESPY-GYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTI 71 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCC-CCCC-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 47999999999999999999997543 2211 111222222223333 33 4688999999542 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++|++|+|+|++++.+-.. ..++..+....+ . .|++||.||.|+......+.+ ..+.+...
T Consensus 72 ~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~~~~~v~~~---------~~~~~a~~ 139 (189)
T cd04121 72 FRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLAFKRQVATE---------QAQAYAER 139 (189)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccchhccCCCHH---------HHHHHHHH
Confidence 3445678899999999985544333 345555655433 3 499999999997543111111 13444444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQ 214 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~ 214 (371)
.+.+++ ..||+++.+++++++.+...+....+.
T Consensus 140 ~~~~~~------e~SAk~g~~V~~~F~~l~~~i~~~~~~ 172 (189)
T cd04121 140 NGMTFF------EVSPLCNFNITESFTELARIVLMRHGR 172 (189)
T ss_pred cCCEEE------EecCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 444444 368888999999999999766654443
No 86
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.64 E-value=4.3e-15 Score=127.96 Aligned_cols=161 Identities=15% Similarity=0.070 Sum_probs=96.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+|+++|.+|+|||||++.+++...... . ..|....+ ..+.. .....+.++||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~-~---~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN-Y---KATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-C---CCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 689999999999999999998765322 1 12222222 22222 1224789999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHH-hCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTL-FGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~-~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|++++-+-. ...++..+... .+.. .|+++|.||+|..... .... .......+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~~--~~~~-----~~~~~~~~~~~ 137 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSPA--QYAL-----MEQDAIKLAAE 137 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCccc--cccc-----cHHHHHHHHHH
Confidence 45567889999999997432211 12334333332 2222 3799999999975431 1100 00012233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+..++ ..||+++.|+.++++.+..++...
T Consensus 138 ~~~~~~------e~Sa~~g~~v~~lf~~l~~~~~~~ 167 (170)
T cd04108 138 MQAEYW------SVSALSGENVREFFFRVAALTFEL 167 (170)
T ss_pred cCCeEE------EEECCCCCCHHHHHHHHHHHHHHc
Confidence 333333 357888999999999998887654
No 87
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.64 E-value=2.3e-15 Score=129.42 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=91.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|.+|+|||||++.+.+...... . .|.......... .+..+.++||||... +.....
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~~~-~----~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSVTT-I----PTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCccc-c----CCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 47999999999999999999986553211 1 122222223333 567899999999642 222234
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.++.++|++|||+|++++.+- ......+...+... ...|+++|+||+|..... ...+.+++.. . ..
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~--~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~------~---~~ 140 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRI--DEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGL------T---RI 140 (168)
T ss_pred HHhccCCEEEEEEeCCchhhH--HHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCCHHHHHHHcCC------C---cc
Confidence 456788999999999854222 12223333333211 124999999999975431 1112222110 0 00
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
....+.+| +.||+++.|+.+++.+|.
T Consensus 141 ~~~~~~~~----~~SAk~g~gv~~~~~~l~ 166 (168)
T cd04149 141 RDRNWYVQ----PSCATSGDGLYEGLTWLS 166 (168)
T ss_pred CCCcEEEE----EeeCCCCCChHHHHHHHh
Confidence 01112222 468899999999998874
No 88
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.64 E-value=8.8e-15 Score=124.41 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++...... . .+++.......... ++ ..+.++||||.... ....
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEK-Y--DPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQF-----------TAMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------chHH
Confidence 5899999999999999999997654222 1 11111111122223 33 35678999996432 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|.......... ....+....
T Consensus 67 ~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (163)
T cd04136 67 DLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDERVVSRE---------EGQALARQW 136 (163)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceecHH---------HHHHHHHHc
Confidence 334567899999999984433222 2334444443221 23499999999997643111111 122233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+++ ..||+++.|+.++++.+...
T Consensus 137 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04136 137 GCPFY------ETSAKSKINVDEVFADLVRQ 161 (163)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHh
Confidence 33333 36778889999999988654
No 89
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.64 E-value=2.4e-15 Score=130.22 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=93.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc------ccCCC-------CCccceeEEEEeEEe----eCCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF------KASAG-------SSAITKTCEMKTTVL----KDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~------~~~~~-------~~~~t~~~~~~~~~~----~~~~~i~liDTPG~~~~ 82 (371)
.+|+++|++|+|||||++++++.... ..... ..++|.........+ ..+..+.+|||||..+.
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 36999999999999999999874310 00000 012222222111212 13456889999997652
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
......++.++|++|+|+|++.+.+..+...+..+.. .. .|+++|+||+|..... .....
T Consensus 81 -----------~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~~---~~~~~- 140 (179)
T cd01890 81 -----------SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSAD---PERVK- 140 (179)
T ss_pred -----------HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcCC---HHHHH-
Confidence 2222334556799999999986665555444433322 22 3899999999975431 11111
Q ss_pred ccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 163 LECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+....+... ......|++++.|+.+|++.+...+
T Consensus 141 -------~~~~~~~~~~~---~~~~~~Sa~~g~gi~~l~~~l~~~~ 176 (179)
T cd01890 141 -------QQIEDVLGLDP---SEAILVSAKTGLGVEDLLEAIVERI 176 (179)
T ss_pred -------HHHHHHhCCCc---ccEEEeeccCCCCHHHHHHHHHhhC
Confidence 12222222211 1123478889999999999987654
No 90
>PLN03118 Rab family protein; Provisional
Probab=99.64 E-value=1.6e-14 Score=128.86 Aligned_cols=166 Identities=16% Similarity=0.148 Sum_probs=97.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+.....+|+|+|++|+|||||++++++.... ... +..+.......+.+ ++ ..+.|+||||....
T Consensus 10 ~~~~~~kv~ivG~~~vGKTsli~~l~~~~~~--~~~-~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~---------- 75 (211)
T PLN03118 10 GYDLSFKILLIGDSGVGKSSLLVSFISSSVE--DLA-PTIGVDFKIKQLTV-GGKRLKLTIWDTAGQERF---------- 75 (211)
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCC--CcC-CCceeEEEEEEEEE-CCEEEEEEEEECCCchhh----------
Confidence 3334579999999999999999999987642 111 11122222223333 33 46889999996432
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHH--HHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEA--AVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~--~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
.......+..+|++|+|+|++++-+-.... +...+. .+......|+++|.||+|..........+ ..
T Consensus 76 -~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~-~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~---------~~ 144 (211)
T PLN03118 76 -RTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVE-LYSTNQDCVKMLVGNKVDRESERDVSREE---------GM 144 (211)
T ss_pred -HHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEECccccccCccCHHH---------HH
Confidence 122233456789999999998543322221 222222 22222224899999999976441111111 12
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+....+..++ ..|++++.++++++..+...+...
T Consensus 145 ~~~~~~~~~~~------e~SAk~~~~v~~l~~~l~~~~~~~ 179 (211)
T PLN03118 145 ALAKEHGCLFL------ECSAKTRENVEQCFEELALKIMEV 179 (211)
T ss_pred HHHHHcCCEEE------EEeCCCCCCHHHHHHHHHHHHHhh
Confidence 22232232222 357778899999999998777553
No 91
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.64 E-value=1.5e-14 Score=127.69 Aligned_cols=172 Identities=19% Similarity=0.155 Sum_probs=103.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcc---ceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAI---TKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~---t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|++|+|||||+|+|+|...+..+....+. |..... +.......+.++||||+.+.....+ ++...
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTP--YPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCcee--eecCCCCCceEEeCCCCCcccCCHH----HHHHH
Confidence 57999999999999999999997654333222221 211111 1111245789999999987543322 22222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh-------hHHHHhcccCCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK-------TLEDYLGLECPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~-------~l~~~l~~~~~~~l 169 (371)
..+.++|++++|.+ .+++..+..++..+... + .|+++|+||+|...+... ..++++.. ....+
T Consensus 76 --~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~-~----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~-i~~~~ 145 (197)
T cd04104 76 --MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCM-G----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQE-IRDNC 145 (197)
T ss_pred --hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHh-C----CCEEEEEecccchhhhhhccccccccHHHHHHH-HHHHH
Confidence 23557788888854 36899999999988875 3 389999999998643211 12233332 11223
Q ss_pred HHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 170 KEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 170 ~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...+... ..++++.+.... .+.++..|.+.+...++..
T Consensus 146 ~~~~~~~~~~~p~v~~vS~~~~----~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 146 LENLQEAGVSEPPVFLVSNFDP----SDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred HHHHHHcCCCCCCEEEEeCCCh----hhcChHHHHHHHHHHhhHH
Confidence 4444432 234555444321 3467778887777666653
No 92
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.63 E-value=1.8e-14 Score=124.85 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=95.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------CCcEEEEEeCCCCCCCCcchH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------DGQVVNVIDTPGLFDSSAESE 87 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~i~liDTPG~~~~~~~~~ 87 (371)
..+|+++|++|+|||||++.+++........ +.++.........+. ....+.||||||..
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~------- 74 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYTDNKFNPKFI--TTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQE------- 74 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCccCC--CccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChH-------
Confidence 3789999999999999999999876532211 111111111112211 12468899999932
Q ss_pred HHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 88 YVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 88 ~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
.+.......+.++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|.........+
T Consensus 75 ----~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~~~v~~~-------- 141 (180)
T cd04127 75 ----RFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQRQVSEE-------- 141 (180)
T ss_pred ----HHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhcCccCHH--------
Confidence 133334455678899999999984332222 223333433221 112489999999997643111111
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
....+....+.+++ ..|++++.|++++++.+.+.+
T Consensus 142 -~~~~~~~~~~~~~~------e~Sak~~~~v~~l~~~l~~~~ 176 (180)
T cd04127 142 -QAKALADKYGIPYF------ETSAATGTNVEKAVERLLDLV 176 (180)
T ss_pred -HHHHHHHHcCCeEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 13334444443333 367888899999999987654
No 93
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.63 E-value=4.8e-15 Score=124.68 Aligned_cols=154 Identities=19% Similarity=0.178 Sum_probs=92.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE--eEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK--TTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|++|+|||||+|.+++........ .|...... ..... ....+.++||||... +...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~ 65 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYK----STIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSI 65 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCccC----CceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHH
Confidence 379999999999999999999887644311 12222222 22221 235788999999532 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+... ..++..+...... ..|+++|+||+|...+.....+ .+..+...
T Consensus 66 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~~~~~~~---------~~~~~~~~ 134 (159)
T cd00154 66 TPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLEDQRQVSTE---------EAQQFAKE 134 (159)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEcccccccccccHH---------HHHHHHHH
Confidence 3445567899999999984221111 2234444433212 2499999999998623111111 13334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
++..++. .|++++.++.+++..+.
T Consensus 135 ~~~~~~~------~sa~~~~~i~~~~~~i~ 158 (159)
T cd00154 135 NGLLFFE------TSAKTGENVEELFQSLA 158 (159)
T ss_pred cCCeEEE------EecCCCCCHHHHHHHHh
Confidence 4444444 45667789999988764
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.63 E-value=1.1e-14 Score=123.53 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=93.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|++++....... ....+.........+ .....+.++||||... +.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGP 67 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhH
Confidence 37999999999999999999987653221 111212222222222 1223688999999432 112223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.. ..++..+....... .|+++|+||+|.......... .+..+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 136 (162)
T cd04123 68 IYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQRVVSKS---------EAEEYAKSVG 136 (162)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCCCHH---------HHHHHHHHcC
Confidence 34567899999999874433222 23344455444433 499999999997743111111 1233333334
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..++. .|++++.|+.++++.+.+.
T Consensus 137 ~~~~~------~s~~~~~gi~~~~~~l~~~ 160 (162)
T cd04123 137 AKHFE------TSAKTGKGIEELFLSLAKR 160 (162)
T ss_pred CEEEE------EeCCCCCCHHHHHHHHHHH
Confidence 33433 5677789999999998654
No 95
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.63 E-value=1.3e-14 Score=121.75 Aligned_cols=162 Identities=23% Similarity=0.222 Sum_probs=96.5
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCC
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDG 103 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~ 103 (371)
++|++|+|||||+|+|++....... ...+.|............+..+.++||||+.+.......... ........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~----~~~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREE----LARRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHH----HHHHHHHh
Confidence 5899999999999999988764322 223333333333333323678999999999876443322212 22233456
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee
Q 040649 104 IHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF 183 (371)
Q Consensus 104 ~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f 183 (371)
+|++++|+|+..+............. ... .|+++|+||+|.... ......... ...........+++.
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~---~~~--~~~ivv~nK~D~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~- 143 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLR---ERG--KPVLLVLNKIDLLPE--EEEEELLEL----RLLILLLLLGLPVIA- 143 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHH---hcC--CeEEEEEEccccCCh--hhHHHHHHH----HHhhcccccCCceEE-
Confidence 79999999999666555544222222 112 499999999998865 333322110 001111111233333
Q ss_pred cCcchhhHhhHHhHHHHHHHHHHH
Q 040649 184 DNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 184 ~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.|+.++.++.++++.+..+
T Consensus 144 -----~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 -----VSALTGEGIDELREALIEA 162 (163)
T ss_pred -----EeeeccCCHHHHHHHHHhh
Confidence 4556678999999888754
No 96
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.63 E-value=1.9e-14 Score=149.89 Aligned_cols=175 Identities=18% Similarity=0.176 Sum_probs=112.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+++|++|+|||||+|+|+|....... ...++|.......+.+ ++..+.+|||||+....... ...+....+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~ 524 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSL 524 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHH
Confidence 3479999999999999999999998742111 1234454444444445 77889999999986432111 111222221
Q ss_pred --hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 --GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 --~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++++|+|++.+.+..+...+..+... ..|+++|+||+|+... .....+... +...+.
T Consensus 525 r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~-----~~piIiV~NK~DL~~~--~~~~~~~~~-----~~~~l~- 591 (712)
T PRK09518 525 RTQAAIERSELALFLFDASQPISEQDLKVMSMAVDA-----GRALVLVFNKWDLMDE--FRRQRLERL-----WKTEFD- 591 (712)
T ss_pred HHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEEchhcCCh--hHHHHHHHH-----HHHhcc-
Confidence 2345778999999999988888887766655432 2499999999998754 222211111 111111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
...+.+....||+++.|+.+|++.+.........
T Consensus 592 ----~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~~~~ 625 (712)
T PRK09518 592 ----RVTWARRVNLSAKTGWHTNRLAPAMQEALESWDQ 625 (712)
T ss_pred ----CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhcc
Confidence 1112222346899999999999999998876543
No 97
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.63 E-value=6.8e-15 Score=127.32 Aligned_cols=159 Identities=13% Similarity=0.087 Sum_probs=93.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|.+|+|||||++.+...... .. ..|.......... .+..+.++||||... +.....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~----~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-TT----IPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-Cc----CCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 479999999999999999999643321 11 1122222333334 567899999999643 222334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.++.++|++|||+|++++.+-. .....+...+... ...|+++|+||.|+... ....+.... +. +...
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~~~ 144 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRID--EAREELHRMLNEDELRDAVILVFANKQDLPDA--MKAAEITEK-----LG--LHSI 144 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHH--HHHHHHHHHhhCHhhcCCcEEEEEeCcCcccC--CCHHHHHHH-----hC--cccc
Confidence 4567889999999998542211 1223333322211 12499999999997543 111211110 00 0111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..+.+.+ ...||+++.|+.+++++|...+
T Consensus 145 ~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~ 173 (175)
T smart00177 145 RDRNWYI---QPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred CCCcEEE---EEeeCCCCCCHHHHHHHHHHHh
Confidence 1222211 1368889999999999987654
No 98
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.63 E-value=1.1e-14 Score=130.26 Aligned_cols=160 Identities=19% Similarity=0.136 Sum_probs=98.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+|+++|.+|+|||||+|.+++...... ...|..... ....+.+ ...+.|+||||... ....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~----~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKS----YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKM 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC----CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHH
Confidence 689999999999999999998764221 122322222 2233322 34788999999432 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+. ....|+++|.||+|.........+ ....+..
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~---------~~~~~~~ 137 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDD---------KHARFAQ 137 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHH---------HHHHHHH
Confidence 3344668899999999985433222 3345555555432 122379999999997643111111 1233443
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++ ..||+++.|+.++++.+...+..
T Consensus 138 ~~~~~~~------~iSAktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 138 ANGMESC------LVSAKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred HcCCEEE------EEECCCCCCHHHHHHHHHHHHHh
Confidence 3333232 25888999999999999876654
No 99
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.63 E-value=3.9e-15 Score=126.49 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=90.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++.+++...+..... .|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~---~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQIIV---PTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcceec---CccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 489999999999999999998653222111 111112222333 567899999999643 22223345
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh--c
Q 040649 101 KDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL--C 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~--~ 176 (371)
+.++|+++||+|++++.+-.. ...+..+..... .....|+++|+||+|.... ...... ...+.. .
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~--~~~~~~---------~~~l~~~~~ 134 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA--LTAVKI---------TQLLGLENI 134 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC--CCHHHH---------HHHhCCccc
Confidence 678899999999985433211 222333322110 0112599999999997654 211111 111110 0
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
....+. ....||+++.|+++++++|.
T Consensus 135 ~~~~~~---~~~~Sa~~g~gv~~~~~~l~ 160 (162)
T cd04157 135 KDKPWH---IFASNALTGEGLDEGVQWLQ 160 (162)
T ss_pred cCceEE---EEEeeCCCCCchHHHHHHHh
Confidence 111111 12368889999999999875
No 100
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.63 E-value=9.6e-15 Score=124.08 Aligned_cols=157 Identities=20% Similarity=0.144 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||+|++++........ +..+.........+. ....+.++||||... +.....
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~ 67 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-----------FRTLTS 67 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhH
Confidence 379999999999999999999876532211 111212222222221 224688999999542 122223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.. ..++..+..... ....|+++|+||+|..... ...++ ...+....+
T Consensus 68 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~~~~iv~nK~D~~~~~-~~~~~---------~~~~~~~~~ 136 (161)
T cd01863 68 SYYRGAQGVILVYDVTRRDTFTNLETWLNELETYST-NNDIVKMLVGNKIDKENRE-VTREE---------GLKFARKHN 136 (161)
T ss_pred HHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCC-CCCCcEEEEEECCcccccc-cCHHH---------HHHHHHHcC
Confidence 34567899999999884433222 223444444332 2235899999999976331 11221 222333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..++. .|++++.|+.++++.+..
T Consensus 137 ~~~~~------~Sa~~~~gi~~~~~~~~~ 159 (161)
T cd01863 137 MLFIE------TSAKTRDGVQQAFEELVE 159 (161)
T ss_pred CEEEE------EecCCCCCHHHHHHHHHH
Confidence 33333 577788999999988754
No 101
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.63 E-value=1.4e-14 Score=127.99 Aligned_cols=160 Identities=16% Similarity=0.161 Sum_probs=95.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||++.+++........ +..........+.+ .+ ..+.|+||||... +...
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~G~~~-----------~~~~ 71 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSYI--TTIGVDFKIRTVEI-NGERVKLQIWDTAGQER-----------FRTI 71 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcC--ccccceeEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHH
Confidence 4799999999999999999999876522211 11111122222222 23 3678999999532 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++++|+|++++-+-.. ..++..+....+ ..|+++|+||+|.......... ....+...
T Consensus 72 ~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~---~~piivVgNK~Dl~~~~~~~~~---------~~~~~~~~ 139 (199)
T cd04110 72 TSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCD---DVCKVLVGNKNDDPERKVVETE---------DAYKFAGQ 139 (199)
T ss_pred HHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 3445667899999999985432221 223444443322 2499999999997643111111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++. .|++++.|+.+|++.+...+..
T Consensus 140 ~~~~~~e------~Sa~~~~gi~~lf~~l~~~~~~ 168 (199)
T cd04110 140 MGISLFE------TSAKENINVEEMFNCITELVLR 168 (199)
T ss_pred cCCEEEE------EECCCCcCHHHHHHHHHHHHHH
Confidence 3433333 5777889999999998866543
No 102
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.63 E-value=3.3e-15 Score=126.83 Aligned_cols=157 Identities=15% Similarity=0.122 Sum_probs=89.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|.+++...... . .|...............+.++||||... +.......
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-~----~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-I----PTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-c----CccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 489999999999999999998775322 1 1211222223332456899999999642 22223334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+.++|++++|+|++++.+-.. ...++...+... ...|+++|+||+|.... ....+.... .. +..+ +..
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~-~~--~~~~---~~~ 134 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDE--SQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRR-FK--LKKY---CSD 134 (160)
T ss_pred hccCCEEEEEEECCcHHHHHH--HHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHH-cC--Cccc---CCC
Confidence 567899999999985432111 122222222111 12499999999997533 112211110 00 0011 111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+.+. ....||+++.|++++++.|..
T Consensus 135 ~~~~---~~~~Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 135 RDWY---VQPCSAVTGEGLAEAFRKLAS 159 (160)
T ss_pred CcEE---EEecccccCCChHHHHHHHhc
Confidence 1111 124688899999999998753
No 103
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=1.2e-14 Score=128.56 Aligned_cols=161 Identities=13% Similarity=0.071 Sum_probs=96.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee--EEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT--CEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~--~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.+|+++|++|+|||||++.+++...... ...|.. .....+.+. ....+.++||||... +..
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~ 65 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGG 65 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhh
Confidence 3799999999999999999998654222 112222 222223331 233678999999532 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC--CCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG--KKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~--~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+.++|++|+|+|++.+.+-.. ..++..+..... .....|+++|+||+|.........+ .+..+
T Consensus 66 ~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~---------~~~~~ 136 (201)
T cd04107 66 MTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGE---------QMDQF 136 (201)
T ss_pred hHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHH---------HHHHH
Confidence 23445678899999999985433222 223333433221 1123499999999997632111111 13344
Q ss_pred HHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+ ..++ ..|++++.|+.++++.+...+..
T Consensus 137 ~~~~~~~~~~------e~Sak~~~~v~e~f~~l~~~l~~ 169 (201)
T cd04107 137 CKENGFIGWF------ETSAKEGINIEEAMRFLVKNILA 169 (201)
T ss_pred HHHcCCceEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 44433 2233 36788889999999999876654
No 104
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.63 E-value=1.2e-14 Score=127.94 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CccccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR-RAFKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~-~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
.+|+++|.+|+|||||++.+++. ..+.... ...+.|.......+.+ .+..+.+|||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 68999999999999999999863 2222211 0122333333333444 667899999999654
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+......++.++|++++|+|++.+.......++..+.. .. .|+++|+||+|....
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 22233344567799999999986544444444443332 22 389999999998644
No 105
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.62 E-value=6.5e-15 Score=128.40 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=92.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|.+|||||||++.+++...... ....+.+ ........ ..+..+.++||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~~-~~t~~~~--~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFVNT-VPTKGFN--TEKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcCCc-CCccccc--eeEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 36899999999999999999987664322 1111111 11112211 1345799999999532 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++-+-.. ...+..+..... ....|+++|+||+|..... ...+..++. +.....
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~-~~~~p~iiv~NK~D~~~~~~~~~~~~~~~------~~~~~~ 141 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSE-NQGVPVLVLANKQDLPNALSVSEVEKLLA------LHELSA 141 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhh-cCCCcEEEEEECcCccccCCHHHHHHHhC------ccccCC
Confidence 3334667899999999884322111 122222322222 1235999999999976431 111221111 000000
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+.. .+.||+++.|+.+|+..+.+.+.
T Consensus 142 --~~~~~~----~~~SA~~~~gi~~l~~~l~~~l~ 170 (183)
T cd04152 142 --STPWHV----QPACAIIGEGLQEGLEKLYEMIL 170 (183)
T ss_pred --CCceEE----EEeecccCCCHHHHHHHHHHHHH
Confidence 001111 23688899999999999876553
No 106
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.62 E-value=1.3e-14 Score=123.40 Aligned_cols=155 Identities=21% Similarity=0.173 Sum_probs=92.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+|+++|.+|+|||||++.+++...... . .+............+. ....+.++||||... +....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~-~-~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD-Y-KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC-C-CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 699999999999999999998764321 1 1111122211222221 234789999999432 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++|++++|+|++++-+-.. ..++..+....+ . .|+++|+||+|.........+ ....+....
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~-~--~p~iiv~nK~Dl~~~~~v~~~---------~~~~~~~~~ 136 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAECG-D--IPMVLVQTKIDLLDQAVITNE---------EAEALAKRL 136 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhcccccCCCHH---------HHHHHHHHc
Confidence 445678899999999984322222 223333333222 2 399999999997654211111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+.+++. .|++++.|+.++++.+..
T Consensus 137 ~~~~~~------~Sa~~~~~v~~l~~~l~~ 160 (162)
T cd04106 137 QLPLFR------TSVKDDFNVTELFEYLAE 160 (162)
T ss_pred CCeEEE------EECCCCCCHHHHHHHHHH
Confidence 444443 566778899999988754
No 107
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.62 E-value=5.6e-15 Score=126.53 Aligned_cols=158 Identities=16% Similarity=0.151 Sum_probs=92.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
+|+++|.+|+|||||+|.+++...... .. ....... ....+ .....+.+|||||.... ...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~--~~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VP--RVLPEIT-IPADVTPERVPTTIVDTSSRPQD-----------RANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CC--CcccceE-eeeeecCCeEEEEEEeCCCchhh-----------hHHHhh
Confidence 789999999999999999998765322 11 1111111 11111 13457889999996542 111122
Q ss_pred hcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh-hHHHHhcccCCchHHHHHHhc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK-TLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~-~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|....... ..++. +..+....
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~--------~~~~~~~~ 135 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEE--------MLPIMNEF 135 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHH--------HHHHHHHH
Confidence 3467899999999985444333 234455554432 3 499999999998654211 11111 12222211
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+. . ......||+++.|+++++..+...+
T Consensus 136 ~~-~---~~~~e~Sa~~~~~v~~lf~~~~~~~ 163 (166)
T cd01893 136 RE-I---ETCVECSAKTLINVSEVFYYAQKAV 163 (166)
T ss_pred hc-c---cEEEEeccccccCHHHHHHHHHHHh
Confidence 11 0 0112468888999999999887654
No 108
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.62 E-value=1.4e-14 Score=124.32 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=93.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||+|++++........ ...+.......... .+ ..+.++||||... +.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYK--ATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcC--CccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHHH
Confidence 79999999999999999999876532211 11121122222333 33 3567999999532 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..+.++|++|+|+|++++.+-... .+...+...... ....|+++|+||+|...+.....+. +..+...
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 138 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKK---------AQQWCQS 138 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHH---------HHHHHHH
Confidence 446678999999999854332221 222222222221 1124999999999987431112221 2334443
Q ss_pred cC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+ .+++. .|++++.|+.++++.+...+.+
T Consensus 139 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 168 (172)
T cd01862 139 NGNIPYFE------TSAKEAINVEQAFETIARKALE 168 (172)
T ss_pred cCCceEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 33 23333 5777889999999998865544
No 109
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.62 E-value=5e-15 Score=131.82 Aligned_cols=155 Identities=14% Similarity=0.103 Sum_probs=93.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC-----------------------------CCCCccceeEEEEeEEeeCCcEE
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSAITKTCEMKTTVLKDGQVV 71 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~~~~~i 71 (371)
+|+++|++|+|||||+++|++..-.... ....++|.......+.+ .+..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 5899999999999999999854321110 00134455555555555 77899
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
.|+||||+.+ .... +..+...+|++|+|+|++.+....+...+..+.. ++. .++|+|+||+|...
T Consensus 80 ~liDTpG~~~-------~~~~----~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~-~~~---~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-------YTRN----MVTGASTADLAILLVDARKGVLEQTRRHSYILSL-LGI---RHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-------HHHH----HHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHH-cCC---CcEEEEEEchhccc
Confidence 9999999632 1222 2234567799999999987766655554444433 332 26888999999875
Q ss_pred CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 152 DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 152 ~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
.....+...... ++.++...+.... .....||+++.|+.+
T Consensus 145 ~~~~~~~~i~~~-----~~~~~~~~~~~~~---~ii~iSA~~g~ni~~ 184 (208)
T cd04166 145 YSEEVFEEIVAD-----YLAFAAKLGIEDI---TFIPISALDGDNVVS 184 (208)
T ss_pred CCHHHHHHHHHH-----HHHHHHHcCCCCc---eEEEEeCCCCCCCcc
Confidence 322223333332 4555555543211 112356677777664
No 110
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.62 E-value=3e-14 Score=126.03 Aligned_cols=159 Identities=16% Similarity=0.199 Sum_probs=97.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.|+++|.+|+|||||++.+........ . ...++.......+.+ ++ ..+.++||||... +.....
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~-~-~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEA-C-KSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCc-C-CCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 589999999999999999987654221 1 111222222233444 44 4788999999532 233344
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc-
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC- 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~- 176 (371)
.++.++|++|+|+|++++-+-.. ..++..+....+.. .|+++|.||+|+... ..+... ....+....
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~--~~v~~~-------~~~~~a~~~~ 136 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD--REISRQ-------QGEKFAQQIT 136 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc--cccCHH-------HHHHHHHhcC
Confidence 56778899999999985433332 23444555443333 399999999997543 111100 112222221
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..||+++.|+.+++..+...+..
T Consensus 137 ~~~~~------etSAktg~gV~e~F~~l~~~~~~ 164 (202)
T cd04120 137 GMRFC------EASAKDNFNVDEIFLKLVDDILK 164 (202)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 22222 36888999999999998865543
No 111
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.62 E-value=1.5e-14 Score=126.84 Aligned_cols=160 Identities=20% Similarity=0.210 Sum_probs=94.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... . .+.+.... ...... ++. .+.+|||||... +.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~-~-~~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~~ 65 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVET-Y-DPTIEDSY-RKQVVV-DGQPCMLEVLDTAGQEE-----------YTALRD 65 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C-CCchHhhE-EEEEEE-CCEEEEEEEEECCCchh-----------hHHHHH
Confidence 489999999999999999986654221 1 11111111 112223 343 578999999542 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..+.++|++|+|+|++++.+-.. ..++..+...... ....|+++|+||+|.......... ....+....
T Consensus 66 ~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~---------~~~~~~~~~ 136 (190)
T cd04144 66 QWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTE---------EGAALARRL 136 (190)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHH---------HHHHHHHHh
Confidence 45667899999999985433222 3344445443321 123499999999997643111111 122233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..||+++.|+.+++..+...+..
T Consensus 137 ~~~~~------e~SAk~~~~v~~l~~~l~~~l~~ 164 (190)
T cd04144 137 GCEFI------EASAKTNVNVERAFYTLVRALRQ 164 (190)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHHHHH
Confidence 43333 36888899999999999865553
No 112
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.62 E-value=8e-15 Score=124.83 Aligned_cols=154 Identities=14% Similarity=0.080 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++.+...... ... .|.......... ....+.++||||... +......+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~~~----pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-TTI----PTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-ccC----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 6999999999999999999654432 211 121122222333 567899999999642 22233445
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+.++|++|||+|++++.+-. .....+...+... ...|+++|+||.|.... ....+.... + -+.....
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~--~~~~~~~ 133 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIG--EAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDK-----L--GLHSLRN 133 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHH-----h--CccccCC
Confidence 77889999999998432211 1222233322211 12499999999997543 122111111 0 0000011
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+.+.+ ...||+++.|+.+++++|.
T Consensus 134 ~~~~~---~~~Sak~g~gv~~~~~~l~ 157 (159)
T cd04150 134 RNWYI---QATCATSGDGLYEGLDWLS 157 (159)
T ss_pred CCEEE---EEeeCCCCCCHHHHHHHHh
Confidence 12211 2368889999999998874
No 113
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.62 E-value=1.7e-14 Score=123.09 Aligned_cols=158 Identities=16% Similarity=0.132 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.++....... . .+.+.......... ++ ..+.++||||.... ....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK-Y--DPTIEDSYRKQVEV-DGQQCMLEILDTAGTEQF-----------TAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc-c--CCcchheEEEEEEE-CCEEEEEEEEECCCcccc-----------hhHH
Confidence 5799999999999999999985543211 1 11111111122333 33 35679999996432 2223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|.+++-+-.. ..++..+..... ....|+++|+||+|.......... ....+....
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDERVVGKE---------QGQNLARQW 136 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhccEEcHH---------HHHHHHHHh
Confidence 334567799999999874322221 223344433221 122499999999997643111111 122333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+.+++ ..||+++.|+.+++..+...+
T Consensus 137 ~~~~~------~~Sa~~~~~v~~~~~~l~~~l 162 (164)
T cd04175 137 GCAFL------ETSAKAKINVNEIFYDLVRQI 162 (164)
T ss_pred CCEEE------EeeCCCCCCHHHHHHHHHHHh
Confidence 43333 367788899999999987654
No 114
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.62 E-value=1.9e-14 Score=125.85 Aligned_cols=160 Identities=19% Similarity=0.196 Sum_probs=95.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++........ ...+.......+.. ++ ..+.++||||... +....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~g~~~-----------~~~~~ 66 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVYI-ENKIIKLQIWDTNGQER-----------FRSLN 66 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHhhH
Confidence 379999999999999999999876532111 11122222222333 33 3578999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.. ..++..+....+.. .|+++|.||.|.......... ....+....
T Consensus 67 ~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~~v~~~---------~~~~~~~~~ 135 (188)
T cd04125 67 NSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNNKVVDSN---------IAKSFCDSL 135 (188)
T ss_pred HHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcccccCCHH---------HHHHHHHHc
Confidence 445678899999999985432221 22334444433333 489999999997644111111 112222322
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .|++++.++.+++..+...+..
T Consensus 136 ~~~~~e------vSa~~~~~i~~~f~~l~~~~~~ 163 (188)
T cd04125 136 NIPFFE------TSAKQSINVEEAFILLVKLIIK 163 (188)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 333333 5777889999999988765543
No 115
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.62 E-value=6.3e-15 Score=126.80 Aligned_cols=158 Identities=18% Similarity=0.117 Sum_probs=92.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+++|++|+|||||++.|.|...... ..|.........+ .+..+.++||||... +....
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 358999999999999999999998754211 1111122223334 577889999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCC--HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS--QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|+...-+ .........+...... ..|+++++||+|.... .....+... +. + ..
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~~~~~i~~~-----l~-~-~~ 144 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLA--GVPVLVFANKQDLATA--APAEEIAEA-----LN-L-HD 144 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhc--CCCEEEEEECCCCccC--CCHHHHHHH-----cC-C-cc
Confidence 344567899999999984211 1111111222211111 2499999999997654 223322221 00 0 00
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
...+.+.+ ...|++++.|++++++++.+
T Consensus 145 ~~~~~~~~---~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 145 LRDRTWHI---QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred cCCCeEEE---EEeECCCCCCHHHHHHHHhc
Confidence 11122211 24688899999999998753
No 116
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.62 E-value=3.3e-15 Score=127.14 Aligned_cols=144 Identities=17% Similarity=0.236 Sum_probs=88.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+|+|..... ..|.. ..+ ... .+|||||++... .. +...+...
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~~-----v~~-~~~--~~iDtpG~~~~~---~~----~~~~~~~~ 61 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTLA------RKTQA-----VEF-NDK--GDIDTPGEYFSH---PR----WYHALITT 61 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCccC------ccceE-----EEE-CCC--CcccCCccccCC---HH----HHHHHHHH
Confidence 79999999999999999999865321 11111 122 111 279999986532 11 22222234
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC--
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-- 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-- 178 (371)
+.++|++++|+|++.+.+.... ++... +. ..|+++++||+|.... ..+. +...+...+.
T Consensus 62 ~~~ad~il~v~d~~~~~s~~~~----~~~~~-~~--~~~ii~v~nK~Dl~~~---~~~~---------~~~~~~~~~~~~ 122 (158)
T PRK15467 62 LQDVDMLIYVHGANDPESRLPA----GLLDI-GV--SKRQIAVISKTDMPDA---DVAA---------TRKLLLETGFEE 122 (158)
T ss_pred HhcCCEEEEEEeCCCcccccCH----HHHhc-cC--CCCeEEEEEccccCcc---cHHH---------HHHHHHHcCCCC
Confidence 5678999999999854332222 22222 21 2489999999997533 1111 2233333332
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+++. .|++++.|+++|++.+...+..
T Consensus 123 p~~~------~Sa~~g~gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 123 PIFE------LNSHDPQSVQQLVDYLASLTKQ 148 (158)
T ss_pred CEEE------EECCCccCHHHHHHHHHHhchh
Confidence 3333 6778899999999999887753
No 117
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.61 E-value=2.3e-14 Score=128.53 Aligned_cols=161 Identities=11% Similarity=0.020 Sum_probs=96.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+++|.+|+|||||++.++............+.+ .....+... ....+.+|||||.... ..
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~--~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 77 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVE--VHPLDFFTNCGKIRFYCWDTAGQEKF-----------GG 77 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCcccee--EEEEEEEECCeEEEEEEEECCCchhh-----------hh
Confidence 556899999999999999999987555322111111111 111122221 2347899999996432 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++|+|+|++++.+-.. ..++..+..... . .|+++|.||+|..... ...+ .+ .+..
T Consensus 78 ~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~~-v~~~---------~~-~~~~ 143 (219)
T PLN03071 78 LRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-N--IPIVLCGNKVDVKNRQ-VKAK---------QV-TFHR 143 (219)
T ss_pred hhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhhhhcc-CCHH---------HH-HHHH
Confidence 22334678899999999985533322 334455554432 2 4999999999975321 1111 11 2222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++ ..||+++.|+.+++..+...+..
T Consensus 144 ~~~~~~~------e~SAk~~~~i~~~f~~l~~~~~~ 173 (219)
T PLN03071 144 KKNLQYY------EISAKSNYNFEKPFLYLARKLAG 173 (219)
T ss_pred hcCCEEE------EcCCCCCCCHHHHHHHHHHHHHc
Confidence 2233333 36888899999999998866554
No 118
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.61 E-value=1.1e-14 Score=126.77 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|+|||||++.+........ ..|.......... .+..+.++||||... +....
T Consensus 16 ~~~kv~lvG~~~vGKTsli~~~~~~~~~~~-----~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~ 78 (182)
T PTZ00133 16 KEVRILMVGLDAAGKTTILYKLKLGEVVTT-----IPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLW 78 (182)
T ss_pred CccEEEEEcCCCCCHHHHHHHHhcCCcccc-----CCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 347899999999999999999975443211 1122222333334 667899999999532 22233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++.++|++|||+|++++-+-. .....+...+... ...|+++|+||.|.... ....+.... +. +..
T Consensus 79 ~~~~~~ad~iI~v~D~t~~~s~~--~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----l~--~~~ 147 (182)
T PTZ00133 79 RHYYQNTNGLIFVVDSNDRERIG--DAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEK-----LG--LHS 147 (182)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHH--HHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHH-----hC--CCc
Confidence 44577889999999998432111 1222333333221 12499999999997543 111111110 00 011
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..+.+++ ...||+++.|+.++++++.+.+.
T Consensus 148 ~~~~~~~~---~~~Sa~tg~gv~e~~~~l~~~i~ 178 (182)
T PTZ00133 148 VRQRNWYI---QGCCATTAQGLYEGLDWLSANIK 178 (182)
T ss_pred ccCCcEEE---EeeeCCCCCCHHHHHHHHHHHHH
Confidence 11221111 13588899999999999886554
No 119
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.61 E-value=1e-14 Score=125.98 Aligned_cols=155 Identities=16% Similarity=0.136 Sum_probs=91.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|++|+|||||++.+++...... ..|.........+ ++..+.++||||... +.....
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47899999999999999999987654321 1222222333444 567899999999643 222233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.++.++|+++||+|++++-+-. .....+...+... ...|+++|+||+|.... ...++.... +. ...+
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~--~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~-----l~--~~~~ 146 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLP--LTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISES-----LG--LTSI 146 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHH-----hC--cccc
Confidence 4456889999999998432211 1112222222111 12499999999997643 122211111 00 0001
Q ss_pred CC-ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DN-RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.. .+.. ...||+++.|++++++.|.
T Consensus 147 ~~~~~~~----~~~SA~~g~gi~e~~~~l~ 172 (174)
T cd04153 147 RDHTWHI----QGCCALTGEGLPEGLDWIA 172 (174)
T ss_pred cCCceEE----EecccCCCCCHHHHHHHHh
Confidence 11 1111 2468888999999999875
No 120
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.61 E-value=5.4e-15 Score=129.03 Aligned_cols=161 Identities=11% Similarity=0.059 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|.+|+|||||+|.+.|...... ..|.......... .+..+.++||||... .....
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~~ 78 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQH-----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRLW 78 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 347899999999999999999998754211 1121122223333 567889999999643 12223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCC-chhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLED-NEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~-~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
..++.++|+++||+|++++-+- ......+...+.. ....|+++|+||+|.... ....+...+.- .....
T Consensus 79 ~~~~~~ad~ii~vvD~~~~~~~--~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l------~~~~~ 150 (184)
T smart00178 79 KDYFPEVNGIVYLVDAYDKERF--AESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGL------TNTTG 150 (184)
T ss_pred HHHhCCCCEEEEEEECCcHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCHHHHHHHcCC------Ccccc
Confidence 3456788999999999843111 1111222222221 012499999999997543 11223322221 00000
Q ss_pred h---cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 175 L---CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 175 ~---~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
. .+.+.. .....|+.++.|++++++++..
T Consensus 151 ~~~~~~~~~~---~i~~~Sa~~~~g~~~~~~wl~~ 182 (184)
T smart00178 151 SKGKVGVRPL---EVFMCSVVRRMGYGEGFKWLSQ 182 (184)
T ss_pred cccccCCcee---EEEEeecccCCChHHHHHHHHh
Confidence 0 011111 1234678889999999999864
No 121
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.61 E-value=5e-15 Score=125.69 Aligned_cols=153 Identities=16% Similarity=0.061 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+|+|++|+|||||++++.+...... ..|.........+ .+..+.++||||... +......+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 489999999999999999976654221 1122222233334 567899999999653 22223345
Q ss_pred cCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh--c
Q 040649 101 KDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL--C 176 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~--~ 176 (371)
+.++|++|+|+|++++.+.. ...+...+....- ...|+++|+||+|.... ....+.. ..+.. .
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~~piiiv~nK~Dl~~~--~~~~~i~---------~~~~~~~~ 130 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEEL--KGAVLLVFANKQDMPGA--LSEAEIS---------EKLGLSEL 130 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhh--cCCcEEEEEeCCCCCCC--CCHHHHH---------HHhCcccc
Confidence 66789999999998432211 1222222222110 12499999999997644 1121111 11110 0
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
....+ ...+.|++++.|+.++++.+.+
T Consensus 131 ~~~~~---~~~~~Sa~~~~gi~~l~~~l~~ 157 (158)
T cd04151 131 KDRTW---SIFKTSAIKGEGLDEGMDWLVN 157 (158)
T ss_pred CCCcE---EEEEeeccCCCCHHHHHHHHhc
Confidence 00101 1234688899999999998753
No 122
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=1.4e-14 Score=126.44 Aligned_cols=162 Identities=15% Similarity=0.161 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++|+|+|++|+|||||++.+++...... ...|....+. .....++ ..+.++||||... +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 3799999999999999999998765322 1112222221 2222112 3688999999432 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++.+-... .++..+... ... .|+++|.||.|.... ......+. ......+..
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~--~piilv~nK~Dl~~~--~~~~~~v~---~~~~~~~~~ 137 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CPG--TPIMLVGLKTDLRKD--KNLDRKVT---PAQAESVAK 137 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CCC--CCEEEEEeChhhhhC--ccccCCcC---HHHHHHHHH
Confidence 33456788999999999854333222 233333332 222 499999999997643 11100010 112333444
Q ss_pred hcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+. .++ ..|++++.++.+++..+...+..
T Consensus 138 ~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 168 (187)
T cd04132 138 KQGAFAYL------ECSAKTMENVEEVFDTAIEEALK 168 (187)
T ss_pred HcCCcEEE------EccCCCCCCHHHHHHHHHHHHHh
Confidence 4343 232 36788899999999998866554
No 123
>PLN03110 Rab GTPase; Provisional
Probab=99.61 E-value=3.7e-14 Score=126.96 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=98.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|++|+|||||++.+++........ ..+........+.+ ++ ..+.||||||... +..
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~--~t~g~~~~~~~v~~-~~~~~~l~l~Dt~G~~~-----------~~~ 76 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESK--STIGVEFATRTLQV-EGKTVKAQIWDTAGQER-----------YRA 76 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeEEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHH
Confidence 44799999999999999999999876532211 11111222222333 33 3788999999432 223
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++|+|+|++++-+-.. ..++..+....+.. .|+++|+||+|+........+ ....+..
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~---------~~~~l~~ 145 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHLRSVAEE---------DGQALAE 145 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccccCCCHH---------HHHHHHH
Confidence 33445668899999999984433222 23445555544333 399999999997543111111 1223333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++. .||+++.++.++++.+...+..
T Consensus 146 ~~~~~~~e------~SA~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 146 KEGLSFLE------TSALEATNVEKAFQTILLEIYH 175 (216)
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 33333333 5778889999999988765543
No 124
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.61 E-value=2e-14 Score=145.43 Aligned_cols=162 Identities=17% Similarity=0.198 Sum_probs=103.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+++|++|+|||||+++|.+...... ..++.|.......+.+.++..++||||||..++ ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 347899999999999999999998765332 234455555555555533448999999997653 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
......+|++++|+|++++........+..+... . .|+++++||+|....+...+...+.. .......++
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L~~-----~g~~~~~~~ 222 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQELSE-----YGLVPEDWG 222 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHHHH-----hhhhHHhcC
Confidence 3345678999999999876666666555544321 2 39999999999864422223322221 111111122
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+.. .+.||+++.|+++|++.+..
T Consensus 223 ~~~~~----v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 223 GDTIF----VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred CCceE----EEEECCCCCChHHHHHhhhh
Confidence 21111 23688899999999998864
No 125
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.61 E-value=1e-14 Score=123.63 Aligned_cols=153 Identities=14% Similarity=0.087 Sum_probs=88.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++++++... ... ..|.........+ .+..+.++||||.... .......
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~-~~~----~~t~~~~~~~~~~-~~~~~~i~D~~G~~~~-----------~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEV-VTT----IPTIGFNVETVEY-KNVSFTVWDVGGQDKI-----------RPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCC-CCC----CCCcCcceEEEEE-CCEEEEEEECCCChhh-----------HHHHHHH
Confidence 489999999999999999998873 211 1122222333344 5678999999996531 2223334
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh--cC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL--CD 177 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~--~~ 177 (371)
+.++|++++|+|++.+-+-.. ...+..+..... ....|+++|+||+|.... ...++... .+.. ..
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~--~~~~~~~~---------~~~~~~~~ 131 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA--LSVSELIE---------KLGLEKIL 131 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc--cCHHHHHH---------hhChhhcc
Confidence 567799999999984311111 122222222111 122499999999998754 22222111 1111 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
...+++ ...|++++.|+.++++.+.
T Consensus 132 ~~~~~~---~~~Sa~~~~gv~~~~~~l~ 156 (158)
T cd00878 132 GRRWHI---QPCSAVTGDGLDEGLDWLL 156 (158)
T ss_pred CCcEEE---EEeeCCCCCCHHHHHHHHh
Confidence 111111 2357778899999988775
No 126
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.60 E-value=4.6e-14 Score=121.75 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=96.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.+.+....... ..|....+ ..... ++ ..+.|+||||... +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 58999999999999999999876653221 11211111 12233 33 3688999999543 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++|++++|+|++++.+-... .+...+..... ....|+++|.||+|.......+.++ ...+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~~~v~~~~---------~~~~a~~ 136 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQRQVTTEE---------GRNLARE 136 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhcCccCHHH---------HHHHHHH
Confidence 34456678999999999865544432 23344444322 1124999999999975431111111 2223333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+.+++ ..||+.+.++.++++.+...+..
T Consensus 137 ~~~~~~------e~Sa~~~~~v~~~f~~l~~~~~~ 165 (172)
T cd04141 137 FNCPFF------ETSAALRHYIDDAFHGLVREIRR 165 (172)
T ss_pred hCCEEE------EEecCCCCCHHHHHHHHHHHHHH
Confidence 333333 36778889999999998865543
No 127
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.60 E-value=7.8e-15 Score=122.15 Aligned_cols=139 Identities=19% Similarity=0.275 Sum_probs=85.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+++|.... ...|.. ..+ .+ .+|||||.... ...+...+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~~-----~~~-~~---~~iDt~G~~~~-------~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQA-----VEY-ND---GAIDTPGEYVE-------NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------ccccee-----EEE-cC---eeecCchhhhh-------hHHHHHHHHHH
Confidence 6899999999999999999987641 111211 122 22 58999996321 11222222334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-c
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN-R 179 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~-r 179 (371)
+.++|++++|+|++++.+.....++. .++ .|+++|+||+|..... ...+ ....++...+. +
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~----~~~----~p~ilv~NK~Dl~~~~-~~~~---------~~~~~~~~~~~~~ 121 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFAS----IFV----KPVIGLVTKIDLAEAD-VDIE---------RAKELLETAGAEP 121 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHH----hcc----CCeEEEEEeeccCCcc-cCHH---------HHHHHHHHcCCCc
Confidence 77899999999998665543332222 222 2999999999976421 1111 12333333332 2
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
++ ..|++++.|+++|++.+.
T Consensus 122 ~~------~~Sa~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 122 IF------EISSVDEQGLEALVDYLN 141 (142)
T ss_pred EE------EEecCCCCCHHHHHHHHh
Confidence 33 367788899999998763
No 128
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.60 E-value=4.9e-14 Score=120.10 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=90.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC-CccccCCCCCcccee--EEEEeEEe--eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR-RAFKASAGSSAITKT--CEMKTTVL--KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~-~~~~~~~~~~~~t~~--~~~~~~~~--~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+|+++|.+|||||||++++.+. ..++.. ...|.. +....... .....+.++||||... +.
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 66 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YS 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HH
Confidence 37999999999999999999854 223221 111221 11122222 1335889999999421 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+-.. ..++..+.... ...|+++|+||+|.... ..+... ....+.
T Consensus 67 ~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~--~~~~~~-------~~~~~~ 134 (164)
T cd04101 67 DMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK--AEVTDA-------QAQAFA 134 (164)
T ss_pred HHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc--cCCCHH-------HHHHHH
Confidence 223445678899999999985432221 23344444332 12499999999997644 111110 011222
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+..++ ..|++++.|+.++++.+.+.
T Consensus 135 ~~~~~~~~------~~Sa~~~~gi~~l~~~l~~~ 162 (164)
T cd04101 135 QANQLKFF------KTSALRGVGYEEPFESLARA 162 (164)
T ss_pred HHcCCeEE------EEeCCCCCChHHHHHHHHHH
Confidence 22222233 36778889999999988764
No 129
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=1.7e-14 Score=146.99 Aligned_cols=165 Identities=18% Similarity=0.195 Sum_probs=110.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.|+++|+.++|||||+++|+|....... ....+.|....+..+...++..+.||||||+.+ +...+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 6899999999999999999986431111 112456665555444444567899999999532 3333344
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++|++++|+|++.++.+.+...+..+.. ++. .++++|+||+|.... ..++..... +..++...+..
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~-lgi---~~iIVVlNKiDlv~~--~~~~~v~~e-----i~~~l~~~~~~ 139 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQL-TGN---PMLTVALTKADRVDE--ARIAEVRRQ-----VKAVLREYGFA 139 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCccCCH--HHHHHHHHH-----HHHHHHhcCCC
Confidence 4667899999999998888887777776654 342 257899999998754 444443333 45555433311
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..+.|+.++.|+++|++.|..+...
T Consensus 140 ---~~~ii~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 140 ---EAKLFVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred ---CCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence 1112346788899999999999887654
No 130
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.60 E-value=9.9e-15 Score=127.76 Aligned_cols=167 Identities=11% Similarity=0.038 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|++|||||||++.+++...... ..|.......+.+ ++..+.++||||... .....
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~~~~~~~-----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~~ 80 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRLW 80 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCccc-----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 357899999999999999999998664211 1122222233444 567889999999532 11222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCC-chhhHHHHhcccCCch--HHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLED-NEKTLEDYLGLECPKP--LKEI 172 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~-~~~~l~~~l~~~~~~~--l~~~ 172 (371)
..++.++|++++|+|++++-+-. .....+...+.. ....|+++|+||+|.... ....+..++....... ...+
T Consensus 81 ~~~~~~ad~iilV~D~~~~~s~~--~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (190)
T cd00879 81 KDYFPEVDGIVFLVDAADPERFQ--ESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSL 158 (190)
T ss_pred HHHhccCCEEEEEEECCcHHHHH--HHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcCHHHHHHHhCcccccccccccc
Confidence 34456789999999997431111 122333333321 123599999999997643 1122222221100000 0000
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.... .+.+. ....||+++.|+.++++++...
T Consensus 159 ~~~~-~~~~~---~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 159 KVSG-IRPIE---VFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cccC-ceeEE---EEEeEecCCCChHHHHHHHHhh
Confidence 0001 11111 1346889999999999998654
No 131
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.60 E-value=2e-14 Score=125.15 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=95.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+++|.+|||||||++.+........ ..|.......+.. .+..+.++||||... +....
T Consensus 16 ~~~ki~ivG~~~~GKTsl~~~l~~~~~~~~-----~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~ 78 (181)
T PLN00223 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLW 78 (181)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCccc-----cCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 447999999999999999999986543221 1122222333444 667899999999421 22333
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++|||+|++++.+-. .....+...+... ...|++||+||.|.... ...+++ ...+..
T Consensus 79 ~~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~---------~~~l~l 145 (181)
T PLN00223 79 RHYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEI---------TDKLGL 145 (181)
T ss_pred HHHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHH---------HHHhCc
Confidence 44567889999999998432211 2223333333211 12499999999997644 222221 112211
Q ss_pred c--CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 C--DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. ..+.+.+ ...||+++.|+.++++++...+.
T Consensus 146 ~~~~~~~~~~---~~~Sa~~g~gv~e~~~~l~~~~~ 178 (181)
T PLN00223 146 HSLRQRHWYI---QSTCATSGEGLYEGLDWLSNNIA 178 (181)
T ss_pred cccCCCceEE---EeccCCCCCCHHHHHHHHHHHHh
Confidence 1 1122221 13588899999999999876554
No 132
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.60 E-value=2.6e-14 Score=125.51 Aligned_cols=162 Identities=19% Similarity=0.198 Sum_probs=94.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.+|+|+|.+|+|||||++.+++........ ..|....+ ..+.. ++. .+.++||||.... ..
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~---~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~ 65 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHRFLVGPY---QNTIGAAFVAKRMVV-GERVVTLGIWDTAGSERY-----------EA 65 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCcCCcCc---ccceeeEEEEEEEEE-CCEEEEEEEEECCCchhh-----------hh
Confidence 379999999999999999999766432111 11221111 12333 333 5669999995431 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+.++|++++|+|++++-+-.. ..++..+... .. ..|+++|+||+|...... ... .+. ...+..+..
T Consensus 66 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~-~~--~~piilv~nK~Dl~~~~~-~~~-~v~---~~~~~~~~~ 137 (193)
T cd04118 66 MSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNL-EE--HCKIYLCGTKSDLIEQDR-SLR-QVD---FHDVQDFAD 137 (193)
T ss_pred hhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhc-CC--CCCEEEEEEccccccccc-ccC-ccC---HHHHHHHHH
Confidence 22334567899999999984422221 2344444443 21 249999999999754310 000 000 011233344
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++. .|++++.|+.+|++.+.+.+..
T Consensus 138 ~~~~~~~~------~Sa~~~~gv~~l~~~i~~~~~~ 167 (193)
T cd04118 138 EIKAQHFE------TSSKTGQNVDELFQKVAEDFVS 167 (193)
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 33433333 5777889999999999866543
No 133
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.60 E-value=2.6e-14 Score=124.36 Aligned_cols=158 Identities=20% Similarity=0.259 Sum_probs=108.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCC---CCcc--ceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAG---SSAI--TKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~---~~~~--t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~ 90 (371)
..+|+|||.+|.||||++|+|+......+... ..++ |+.......... ++ -.+++||||||+|.- .++..|
T Consensus 46 ~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI-nN~ncW 124 (336)
T KOG1547|consen 46 DFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI-NNDNCW 124 (336)
T ss_pred ceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCccccc-Cccchh
Confidence 36899999999999999999987766543221 1122 333333222221 22 278999999999863 345566
Q ss_pred HHHHHHHhhh------------------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 91 KEIAKCIGMA------------------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 91 ~ei~~~~~~~------------------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+-|.+++... ...+||++|.++.+ +.+.+.|.++++.|.+.. +++.|+.|.|.+.
T Consensus 125 ePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaDtlT 198 (336)
T KOG1547|consen 125 EPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKADTLT 198 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeeccccc
Confidence 6666655322 13689999999877 778899999999888763 8999999999875
Q ss_pred CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhh
Q 040649 152 DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE 190 (371)
Q Consensus 152 ~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~s 190 (371)
- +.-..|... ++.-+...+..+++.+....+.
T Consensus 199 l--eEr~~Fkqr-----I~~el~~~~i~vYPq~~fded~ 230 (336)
T KOG1547|consen 199 L--EERSAFKQR-----IRKELEKHGIDVYPQDSFDEDL 230 (336)
T ss_pred H--HHHHHHHHH-----HHHHHHhcCcccccccccccch
Confidence 5 344444443 6777777788888876664443
No 134
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=3e-14 Score=122.71 Aligned_cols=161 Identities=19% Similarity=0.128 Sum_probs=94.7
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
|+|+|.+|+|||||++++++...... .. .|....+. .... ++. .+.++||||.... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~-~~---~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPED-YV---PTVFENYSADVEV-DGKPVELGLWDTAGQEDY-----------DRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCC-CC---CcEEeeeeEEEEE-CCEEEEEEEEECCCCccc-----------chhch
Confidence 58999999999999999998765322 11 12112221 2222 333 5889999996432 11223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLKEI 172 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~~~ 172 (371)
..+.++|++|+|+|++++-+-.. ..++..+....+ ..|+++|.||+|..... .....+... ........+
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~---~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~ 140 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFCP---NTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEAL 140 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHH
Confidence 35678899999999985432222 234455554433 24999999999976431 222222110 001112334
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
....+. .++ ..|++++.|+.++++.+...+
T Consensus 141 ~~~~~~~~~~------e~Sa~~~~~v~~lf~~l~~~~ 171 (174)
T smart00174 141 AKRIGAVKYL------ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred HHHcCCcEEE------EecCCCCCCHHHHHHHHHHHh
Confidence 444332 333 357888999999999887553
No 135
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.60 E-value=8.8e-15 Score=123.16 Aligned_cols=155 Identities=19% Similarity=0.182 Sum_probs=88.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
|+++|++|+|||||+|+|+|........ .|.......... .+..+.++||||... +.......+
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~~----~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDTI----PTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCcc----CCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 7899999999999999999986532211 122222222333 456789999999542 222233345
Q ss_pred CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 102 DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
..+|++++|+|++.+.+. ......+...+.. ....|+++|+||+|.... ......... +. +.....+
T Consensus 66 ~~~d~ii~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~--~~~~~~~~~-----~~--~~~~~~~ 134 (159)
T cd04159 66 RGVNAIVYVVDAADRTAL--EAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA--LSVDELIEQ-----MN--LKSITDR 134 (159)
T ss_pred hcCCEEEEEEECCCHHHH--HHHHHHHHHHHcChhhcCCCEEEEEeCccccCC--cCHHHHHHH-----hC--cccccCC
Confidence 678999999999732211 1111223322211 112499999999997654 222222111 00 0000111
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+. ....|++++.|+.++++.+..
T Consensus 135 ~~~---~~~~Sa~~~~gi~~l~~~l~~ 158 (159)
T cd04159 135 EVS---CYSISCKEKTNIDIVLDWLIK 158 (159)
T ss_pred ceE---EEEEEeccCCChHHHHHHHhh
Confidence 111 123577888999999998754
No 136
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.60 E-value=4e-14 Score=120.69 Aligned_cols=156 Identities=15% Similarity=0.174 Sum_probs=92.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||++.+++....+... +..........+.. .+ ..+.++||||... +.....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 67 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSHI--STIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTITK 67 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhhHH
Confidence 68999999999999999999776533211 11111122223333 33 3678999999432 122233
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++..+|++++|+|++++-+-.. ..++..+....+.. .|+++|.||.|.........+ ....+....+
T Consensus 68 ~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~---------~~~~~~~~~~ 136 (161)
T cd04117 68 QYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQKRQVGDE---------QGNKLAKEYG 136 (161)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCCCHH---------HHHHHHHHcC
Confidence 44668899999999985422222 23344444433223 499999999997543111111 1223333333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+++ ..||+++.++.+++..|.+.
T Consensus 137 ~~~~------e~Sa~~~~~v~~~f~~l~~~ 160 (161)
T cd04117 137 MDFF------ETSACTNSNIKESFTRLTEL 160 (161)
T ss_pred CEEE------EEeCCCCCCHHHHHHHHHhh
Confidence 3332 36778889999999988653
No 137
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.59 E-value=1.6e-14 Score=149.50 Aligned_cols=161 Identities=16% Similarity=0.170 Sum_probs=104.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+|+|++|+|||||+++|.+..+.. ...+++|.....+.+.+ ++..++||||||+.++. ...
T Consensus 289 R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m~ 354 (787)
T PRK05306 289 RPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AMR 354 (787)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hHH
Confidence 34789999999999999999998866532 22345565555555666 67889999999987531 112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
......+|++|+|+|++++........+..+... . .|+|+|+||+|....+...+...+.. ...+...++
T Consensus 355 ~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a~~e~V~~eL~~-----~~~~~e~~g 424 (787)
T PRK05306 355 ARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGANPDRVKQELSE-----YGLVPEEWG 424 (787)
T ss_pred HhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECccccccCHHHHHHHHHH-----hcccHHHhC
Confidence 2334567999999999877766666666554432 2 39999999999864321112111111 011112222
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+.. ...||+++.|+.+|++.+..
T Consensus 425 ~~vp~----vpvSAktG~GI~eLle~I~~ 449 (787)
T PRK05306 425 GDTIF----VPVSAKTGEGIDELLEAILL 449 (787)
T ss_pred CCceE----EEEeCCCCCCchHHHHhhhh
Confidence 21111 23688899999999998864
No 138
>PTZ00369 Ras-like protein; Provisional
Probab=99.59 E-value=4.7e-14 Score=123.56 Aligned_cols=161 Identities=19% Similarity=0.141 Sum_probs=94.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+++|.+|+|||||++.+++...........+.+ . ...+.+. ....+.++||||..+. ....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~--~-~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDS--Y-RKQCVIDEETCLLDILDTAGQEEY-----------SAMR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhE--E-EEEEEECCEEEEEEEEeCCCCccc-----------hhhH
Confidence 4799999999999999999999776532211111111 1 1122221 2235778999997652 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|........... ...+....
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~~~i~~~~---------~~~~~~~~ 140 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSERQVSTGE---------GQELAKSF 140 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccccccCHHH---------HHHHHHHh
Confidence 334567899999999985433121 2334444443221 124999999999965431111111 12233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++ ..||+++.|+.+++..+...+.
T Consensus 141 ~~~~~------e~Sak~~~gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 141 GIPFL------ETSAKQRVNVDEAFYELVREIR 167 (189)
T ss_pred CCEEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 33333 3678888999999998876544
No 139
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.59 E-value=5.1e-14 Score=119.62 Aligned_cols=159 Identities=18% Similarity=0.136 Sum_probs=92.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
+|+++|++|+|||||++.+++....... .+.+........... ....+.++||||.... ......
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVLDGEDVQLNILDTAGQEDY-----------AAIRDN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCcccc---CCcchhhEEEEEEECCEEEEEEEEECCChhhh-----------hHHHHH
Confidence 7999999999999999999976643221 111111111112221 2346889999995432 222333
Q ss_pred hcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....|++++|+|++++-+-. -..++..+..... ....|+++|+||+|........... ...+...++.
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~~~~~~~~~---------~~~~~~~~~~ 137 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLEDKRQVSSEE---------AANLARQWGV 137 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEccccccccccCHHH---------HHHHHHHhCC
Confidence 456779999999987432211 1223333333211 1224999999999986521111111 2223333443
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+++ ..|++++.|+.+|+..+...+.
T Consensus 138 ~~~------~~Sa~~~~gi~~l~~~l~~~~~ 162 (164)
T cd04139 138 PYV------ETSAKTRQNVEKAFYDLVREIR 162 (164)
T ss_pred eEE------EeeCCCCCCHHHHHHHHHHHHH
Confidence 333 3677889999999998876543
No 140
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=3.5e-14 Score=121.63 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=93.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|++|+|||||++.+++....+.. ....+.......+.+ .+ ..+.++||||... +...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 478999999999999999999966543221 111122222223333 34 3577899999532 2222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++..+|++++|+|++++.+... ..++..+....... .|+++|.||+|.... ..+.... .+.+...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~--~~i~~~~-------~~~~~~~ 141 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER--REVSQQR-------AEEFSDA 141 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc--cccCHHH-------HHHHHHH
Confidence 2334667899999999874322211 23444445444333 389999999997643 1111110 1222222
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
....++ ..|++++.|+.++++.+...
T Consensus 142 ~~~~~~------~~Sa~~~~gv~~l~~~i~~~ 167 (169)
T cd04114 142 QDMYYL------ETSAKESDNVEKLFLDLACR 167 (169)
T ss_pred cCCeEE------EeeCCCCCCHHHHHHHHHHH
Confidence 222233 36777889999999988754
No 141
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.59 E-value=7.3e-14 Score=120.10 Aligned_cols=160 Identities=16% Similarity=0.120 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||++.+++....... ............+.+ ++ ..+.++||||... ... ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-------~~~---~~~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEI-DGERIKVQLWDTAGQER-------FRK---SMV 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEEE-CCeEEEEEEEeCCChHH-------HHH---hhH
Confidence 68999999999999999999976643221 111111222223333 33 4788999999432 111 123
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|.........+ ....+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSL-PNEVPRILVGNKCDLREQIQVPTD---------LAQRFADAH 139 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcC-CCCCCEEEEEECccchhhcCCCHH---------HHHHHHHHc
Confidence 344678899999999985443333 233334443321 122499999999997643111111 122333433
Q ss_pred CCceEeecCcchhhHhh---HHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKR---TEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~---~~~i~~Ll~~i~~~~ 208 (371)
...++. .||++ +.++.+++..+...+
T Consensus 140 ~~~~~e------~Sa~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 SMPLFE------TSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred CCcEEE------EeccCCcCCCCHHHHHHHHHHHh
Confidence 334444 34444 577888887766443
No 142
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.59 E-value=4.3e-14 Score=119.50 Aligned_cols=156 Identities=19% Similarity=0.186 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||++++++... .... .+.+.......... . ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~-~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF-VEEY--DPTIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC-CcCc--CCChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 489999999999999999998763 2221 11111222222333 3 24678999999543 122223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.+ ..+...+....+. ...|+++|+||+|.........+ ....+....+
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~~~~~~---------~~~~~~~~~~ 135 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENERQVSKE---------EGKALAKEWG 135 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCcccccceecHH---------HHHHHHHHcC
Confidence 34556799999999884332222 3333444444331 23599999999998753111111 1233334333
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+++ ..|++.+.|+.++++.+...
T Consensus 136 ~~~~------~~S~~~~~~i~~l~~~l~~~ 159 (160)
T cd00876 136 CPFI------ETSAKDNINIDEVFKLLVRE 159 (160)
T ss_pred CcEE------EeccCCCCCHHHHHHHHHhh
Confidence 3333 35677789999999987653
No 143
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.59 E-value=3.8e-14 Score=128.21 Aligned_cols=88 Identities=19% Similarity=0.296 Sum_probs=59.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++|+|||||+|+|+|..... ......|..+....+.+ .+..+.++||||+.+...........+ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~v--~~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSEV--AAYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccc--cCCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 68999999999999999999986422 22334454444444445 778899999999875432211222222 234
Q ss_pred cCCceEEEEEEeCCC
Q 040649 101 KDGIHAVLLVFSVRS 115 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~ 115 (371)
+..+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 567899999999863
No 144
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.59 E-value=4.1e-14 Score=123.96 Aligned_cols=165 Identities=18% Similarity=0.116 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|.+|+|||||++.+++....... ..|....+ ..... ++ ..+.|+||||.... ...
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~-----------~~l 64 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFV-DGLHIELSLWDTAGQEEF-----------DRL 64 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEE-CCEEEEEEEEECCCChhc-----------ccc
Confidence 37999999999999999999987653321 11211111 11222 33 46889999995431 112
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc-----CCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE-----CPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~-----~~~~l 169 (371)
....+.++|++++|+|++++-+-.. ..++..+....+ ..|+++|.||+|+... .......... .....
T Consensus 65 ~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~---~~piilvgNK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 139 (189)
T cd04134 65 RSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP---GVKLVLVALKCDLREA--RNERDDLQRYGKHTISYEEG 139 (189)
T ss_pred ccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccC--hhhHHHHhhccCCCCCHHHH
Confidence 2345678899999999985433322 234555554432 2499999999997654 2221111100 00011
Q ss_pred HHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+. +.+ ...||+++.|+.+++..+...+..
T Consensus 140 ~~~~~~~~~-~~~----~e~SAk~~~~v~e~f~~l~~~~~~ 175 (189)
T cd04134 140 LAVAKRINA-LRY----LECSAKLNRGVNEAFTEAARVALN 175 (189)
T ss_pred HHHHHHcCC-CEE----EEccCCcCCCHHHHHHHHHHHHhc
Confidence 222222221 112 236888899999999999876654
No 145
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.59 E-value=6.3e-14 Score=122.06 Aligned_cols=163 Identities=14% Similarity=0.117 Sum_probs=96.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++...... . .+..........+.. ++ ..+.|+||+|... +....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~-~-~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEFDED-Y-IQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINML 66 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-C-CCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHhh
Confidence 3789999999999999999987654221 1 111111122222333 33 4688999999532 22334
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch-hhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE-KTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~-~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++.++|++++|+|++++.+-.+ ..++..+....+.. .| ++|.||+|+..+.. ........ ....+...
T Consensus 67 ~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~-----~~~~~a~~ 138 (182)
T cd04128 67 PLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITK-----QARKYAKA 138 (182)
T ss_pred HHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHH-----HHHHHHHH
Confidence 456778999999999985543332 23444454432222 25 68899999753210 11111111 13334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++ ..||+++.|+++++..+...+..
T Consensus 139 ~~~~~~------e~SAk~g~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 139 MKAPLI------FCSTSHSINVQKIFKIVLAKAFD 167 (182)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 443333 36888899999999998865543
No 146
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.59 E-value=3.3e-14 Score=144.35 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=108.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCc--cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRA--FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++++|||||+|+|+|... ++. ....++|....+..+.+ ++..+.+|||||..+ +...+.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~e-E~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~ 68 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPE-EKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAI 68 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChh-HhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHH
Confidence 689999999999999999998542 111 11245666666655555 568899999999421 333334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD- 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~- 177 (371)
..+.++|++++|+|++++........+..+.. +|. .++++|+||+|..+. ..++..... ++.++...+
T Consensus 69 ~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~-lgi---~~iIVVlNK~Dlv~~--~~~~~~~~e-----i~~~l~~~~~ 137 (581)
T TIGR00475 69 AGGGGIDAALLVVDADEGVMTQTGEHLAVLDL-LGI---PHTIVVITKADRVNE--EEIKRTEMF-----MKQILNSYIF 137 (581)
T ss_pred hhhccCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEECCCCCCH--HHHHHHHHH-----HHHHHHHhCC
Confidence 45567899999999997666666666655543 332 249999999998754 333322222 444444332
Q ss_pred ---CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 178 ---NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 178 ---~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+++ +.|+.++.|+.+|++.+..++...
T Consensus 138 ~~~~~ii------~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 138 LKNAKIF------KTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred CCCCcEE------EEeCCCCCCchhHHHHHHHHHHhC
Confidence 2223 367888899999999988776654
No 147
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.58 E-value=4e-14 Score=121.53 Aligned_cols=157 Identities=14% Similarity=0.073 Sum_probs=90.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|||||||++.+++.. ..... .|.......+.. .+..+.++||||... +......+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~--~~~~~---~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEI--PKKVA---PTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCC--Ccccc---CcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 48999999999999999999872 22111 121122223344 667899999999432 22223445
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+.++|+++||+|++++.+-.+ ...++....... ...|+++|+||.|.... .+..+..... .+..+....+.
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~--~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~---~l~~~~~~~~~ 136 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQE--VKEILRELLQHPRVSGKPILVLANKQDKKNA--LLGADVIEYL---SLEKLVNENKS 136 (167)
T ss_pred HcCCCEEEEEEECCchhHHHH--HHHHHHHHHcCccccCCcEEEEEeCCCCcCC--CCHHHHHHhc---CcccccCCCCc
Confidence 678899999999984432221 222333322211 23599999999997655 2222222210 02222222222
Q ss_pred ceEeecCcchhhHhhH------HhHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRT------EQVQQLLSLVN 205 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~------~~i~~Ll~~i~ 205 (371)
+++.+ ..||+++ .|+.+.++++.
T Consensus 137 ~~~~~----~~Sa~~g~~~~~~~g~~~~~~wl~ 165 (167)
T cd04161 137 LCHIE----PCSAIEGLGKKIDPSIVEGLRWLL 165 (167)
T ss_pred eEEEE----EeEceeCCCCccccCHHHHHHHHh
Confidence 23332 2456665 78999998874
No 148
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.58 E-value=3.2e-14 Score=127.77 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=99.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCC-------------Ccccee------------------------EEEEeE
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGS-------------SAITKT------------------------CEMKTT 63 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------------~~~t~~------------------------~~~~~~ 63 (371)
+|+++|++|+|||||++.++...... +... .+.|.. .....+
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~-~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDN-GRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCC-CCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 47899999999999999998533211 1000 011100 000111
Q ss_pred EeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 64 VLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 64 ~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
.. .+..++++||||..+ ........+. ...+|++++|+|++.++...+...+.++... + .|+++|
T Consensus 80 ~~-~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~-~----ip~ivv 144 (224)
T cd04165 80 EK-SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALAL-N----IPVFVV 144 (224)
T ss_pred ee-CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEE
Confidence 22 567899999999643 2222222221 1357999999999988888888888887754 2 389999
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEe--------------------ecCcchhhHhhHHhHHHHHHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVL--------------------FDNKTKYEAKRTEQVQQLLSL 203 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~--------------------f~~~~~~sa~~~~~i~~Ll~~ 203 (371)
+||+|.... ..+...+.. +...+...+....+ +.+....|+.++.|++.|+.+
T Consensus 145 vNK~D~~~~--~~~~~~~~~-----l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~ 217 (224)
T cd04165 145 VTKIDLAPA--NILQETLKD-----LKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAF 217 (224)
T ss_pred EECccccCH--HHHHHHHHH-----HHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHH
Confidence 999998754 444443332 34444321111000 112234578889999999998
Q ss_pred HHHH
Q 040649 204 VNAV 207 (371)
Q Consensus 204 i~~~ 207 (371)
+..+
T Consensus 218 L~~l 221 (224)
T cd04165 218 LNLL 221 (224)
T ss_pred HHhc
Confidence 8643
No 149
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.58 E-value=7e-14 Score=120.98 Aligned_cols=161 Identities=18% Similarity=0.130 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.+.+...... ...|....+. .+.. ++ ..+.|+||||.... ...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQEDY-----------DRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEEE-CCEEEEEEEEECCCccch-----------hhh
Confidence 5799999999999999999997654222 1122222221 2233 33 46789999996542 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc-----CCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE-----CPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~-----~~~~l 169 (371)
....+.++|++|+|+|++++-+-... .++..+....+ . .|+++|.||.|.... ..+.+.+... .....
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~--~~~~~~l~~~~~~~v~~~~~ 140 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCP-K--TPFLLVGTQIDLRDD--PSTIEKLAKNKQKPITPETG 140 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhC--hhhHHHhhhccCCCcCHHHH
Confidence 23356688999999999855333322 24445544332 2 499999999997544 2221111110 01112
Q ss_pred HHHHHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 170 KEILQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 170 ~~~~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
..+....+ ..++ ..||+++.|+.++++.+...
T Consensus 141 ~~~a~~~~~~~~~------e~SA~tg~~v~~~f~~~~~~ 173 (175)
T cd01874 141 EKLARDLKAVKYV------ECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred HHHHHHhCCcEEE------EecCCCCCCHHHHHHHHHHH
Confidence 22333322 1233 36888899999999887653
No 150
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.58 E-value=7.9e-14 Score=124.37 Aligned_cols=162 Identities=15% Similarity=0.142 Sum_probs=96.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||+|.+++...... ..+.++.......+...++ ..+.++||||... +....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~--~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 69 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEV--SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FRSIT 69 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC--CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HHHHH
Confidence 6899999999999999999998765322 1122222222222222223 3688999999432 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++++-+-.. ..++..+...... ...|+++|.||.|.........+ ....+...+
T Consensus 70 ~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~~~v~~~---------~~~~~~~~~ 139 (211)
T cd04111 70 RSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQRQVTRE---------EAEKLAKDL 139 (211)
T ss_pred HHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccccccCHH---------HHHHHHHHh
Confidence 345677899999999985422222 2233334333322 12478999999997643111111 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..|++++.|+.++++.|...+..
T Consensus 140 ~~~~~------e~Sak~g~~v~e~f~~l~~~~~~ 167 (211)
T cd04111 140 GMKYI------ETSARTGDNVEEAFELLTQEIYE 167 (211)
T ss_pred CCEEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 43333 35777889999999998865543
No 151
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.58 E-value=7.1e-14 Score=125.57 Aligned_cols=161 Identities=19% Similarity=0.121 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|.+|+|||||++.+++.........+... .......+.+ .....+.+|||||... . +. .
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~-~~~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~---~ 66 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGD-DDTYERTVSVDGEESTLVVIDHWEQEM------W----TE---D 66 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcc-ccceEEEEEECCEEEEEEEEeCCCcch------H----HH---h
Confidence 37999999999999999999765543111111111 0111112222 1335688999999651 0 11 1
Q ss_pred hhcC-CceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 99 MAKD-GIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 99 ~~~~-~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.++. ++|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|.......+.+. ...+....
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~-~~~~piilV~NK~Dl~~~~~v~~~~---------~~~~a~~~ 136 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQ-LEDRPIILVGNKSDLARSREVSVQE---------GRACAVVF 136 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhccccceecHHH---------HHHHHHHc
Confidence 1223 7899999999985432221 334444444321 1234999999999976442111111 12233333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..||+++.|+.+|++.+...+..
T Consensus 137 ~~~~~------e~SA~~~~gv~~l~~~l~~~~~~ 164 (221)
T cd04148 137 DCKFI------ETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred CCeEE------EecCCCCCCHHHHHHHHHHHHHh
Confidence 33333 36788889999999999877753
No 152
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.58 E-value=2.2e-14 Score=122.96 Aligned_cols=162 Identities=15% Similarity=0.076 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|++|+|||||++++++........ +............ .....+.++||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYV---PTVFDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC---CceeeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 379999999999999999999887532211 1111111112222 123468899999976421 1112
Q ss_pred hhcCCceEEEEEEeCCCCCCH--HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh----cccCCchHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQ--EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL----GLECPKPLKEI 172 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~--~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l----~~~~~~~l~~~ 172 (371)
..+..+|++++|+|.+++.+- ....++..+....+ ..|+++|+||+|.... ......+ ..........+
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~--~~~~~~~~~~~~~v~~~~~~~~ 141 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDD--ENTLKKLEKGKEPITPEEGEKL 141 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhc--hhhhhhcccCCCccCHHHHHHH
Confidence 234678999999999843222 22334444444333 2499999999998755 2111100 00001112233
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
....+. .++ ..|++++.|+.++++.+.+
T Consensus 142 ~~~~~~~~~~------~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 142 AKEIGAIGYM------ECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred HHHhCCeEEE------EeecCCCCCHHHHHHHHhh
Confidence 333332 223 3577788999999988754
No 153
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.57 E-value=9.9e-14 Score=124.17 Aligned_cols=171 Identities=19% Similarity=0.071 Sum_probs=95.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|.+|+|||||++.+++...... ..|....+....+ ....+.||||||.... ......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~-----------~~l~~~ 63 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQF-----------HGLGSM 63 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccc-----------hhhHHH
Confidence 3789999999999999999998775321 1122222222223 3457899999996432 112233
Q ss_pred hcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh---------hHHHH-hcccCCch
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK---------TLEDY-LGLECPKP 168 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~---------~l~~~-l~~~~~~~ 168 (371)
.+.++|++|+|+|++++.+-... .++..+....+.. .|+++|.||+|+...... ..... ........
T Consensus 64 ~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e 141 (220)
T cd04126 64 YCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLED 141 (220)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccccccccccccccccccccCCHHH
Confidence 46688999999999854333222 2333333333333 399999999997641000 00000 00000111
Q ss_pred HHHHHHhcCCce------Eee--cCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 169 LKEILQLCDNRW------VLF--DNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 169 l~~~~~~~~~r~------~~f--~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+....+... -++ -.....||+++.+|.+++..+.+.+.
T Consensus 142 ~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 142 AKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred HHHHHHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 233333322100 000 01124788899999999998876554
No 154
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.57 E-value=6e-14 Score=126.39 Aligned_cols=188 Identities=16% Similarity=0.181 Sum_probs=117.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH-HHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE-YVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~-~~~~ei~~~ 96 (371)
...+|+|+|.|++|||||.|.+.|..++ ..+....|+.+..-.+...+...+.++||||+........ .....+...
T Consensus 71 k~L~vavIG~PNvGKStLtN~mig~kv~--~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~ 148 (379)
T KOG1423|consen 71 KSLYVAVIGAPNVGKSTLTNQMIGQKVS--AVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQN 148 (379)
T ss_pred eEEEEEEEcCCCcchhhhhhHhhCCccc--cccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhC
Confidence 4579999999999999999999999984 4445555666665554444667899999999987543221 111223333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh--hHHHHhcccCCch-HHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK--TLEDYLGLECPKP-LKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~--~l~~~l~~~~~~~-l~~~~ 173 (371)
...+...+|+|++|+|++..-.......+..+..... .|-++|.||+|.+..... .+.+.+....-.. ..++-
T Consensus 149 ~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~ 224 (379)
T KOG1423|consen 149 PRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQ 224 (379)
T ss_pred HHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchhhhHHhhhHHhccccccchhhhhHH
Confidence 4456678899999999984333334455666665432 299999999998754211 1111111111110 01111
Q ss_pred HhcCC-c----------eEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 174 QLCDN-R----------WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 174 ~~~~~-r----------~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..... + .-.|......||++|.|+++|.+++....+..
T Consensus 225 ~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~g 273 (379)
T KOG1423|consen 225 EKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPG 273 (379)
T ss_pred HHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCC
Confidence 11110 0 11244445589999999999999998887753
No 155
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.57 E-value=1.3e-14 Score=119.25 Aligned_cols=141 Identities=21% Similarity=0.274 Sum_probs=89.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|||||||+++|.|..... ..|.... + .+ .+|||||-+-- + ..+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~~------~KTq~i~-----~-~~---~~IDTPGEyiE---~----~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIRY------KKTQAIE-----Y-YD---NTIDTPGEYIE---N----PRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCCc------CccceeE-----e-cc---cEEECChhhee---C----HHHHHHHHH
Confidence 589999999999999999999977521 1232222 2 11 36999996531 1 223444444
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|+|++|.|++.+.+.--..+. ..|. +|+|-|+||+|...++ ..++. ....+...|..
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa----~~f~----~pvIGVITK~Dl~~~~-~~i~~---------a~~~L~~aG~~ 121 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFA----SMFN----KPVIGVITKIDLPSDD-ANIER---------AKKWLKNAGVK 121 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhh----cccC----CCEEEEEECccCccch-hhHHH---------HHHHHHHcCCC
Confidence 45577999999999854332222121 2232 4999999999977331 33332 34456666644
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
-. ...|+.+++|+++|.++|.
T Consensus 122 ~i-----f~vS~~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 122 EI-----FEVSAVTGEGIEELKDYLE 142 (143)
T ss_pred Ce-----EEEECCCCcCHHHHHHHHh
Confidence 32 2256778899999999875
No 156
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.57 E-value=1.1e-13 Score=118.68 Aligned_cols=159 Identities=18% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|++|+|||||++.+++........ +..+.......+.+ ++ ..+.++||||... +..
T Consensus 4 ~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~ 69 (170)
T cd04116 4 SLLKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTLQIWDTAGQER-----------FRS 69 (170)
T ss_pred eEEEEEEECCCCCCHHHHHHHHHcCCCCcCcC--CceeeEEEEEEEEE-CCeEEEEEEEeCCChHH-----------HHH
Confidence 34799999999999999999999766533211 11111121222333 33 3677899999421 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+.++|++++|+|++++-+-.. ..+...+...... ....|+++|.||+|..... .... .+..+
T Consensus 70 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~---------~~~~~ 139 (170)
T cd04116 70 LRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQ-VSTE---------EAQAW 139 (170)
T ss_pred hHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccccc-cCHH---------HHHHH
Confidence 33345677899999999984432222 2233333332211 1124999999999975321 1111 13334
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
....+. .++ ..|++++.++.++++.+.+
T Consensus 140 ~~~~~~~~~~------e~Sa~~~~~v~~~~~~~~~ 168 (170)
T cd04116 140 CRENGDYPYF------ETSAKDATNVAAAFEEAVR 168 (170)
T ss_pred HHHCCCCeEE------EEECCCCCCHHHHHHHHHh
Confidence 443332 222 3577788999999987754
No 157
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.57 E-value=3.2e-14 Score=146.10 Aligned_cols=164 Identities=15% Similarity=0.189 Sum_probs=102.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
..++|+|+|++|+|||||+++|++...... ..++.|.....+...+. .+..++||||||+.. +.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence 457899999999999999999997665322 12344433333333332 357899999999542 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
......+..+|++|+|+|++++........+..+... . .|+|+|+||+|........+...+.. ...+..
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~~e~v~~eL~~-----~~ll~e 379 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANANTERIKQQLAK-----YNLIPE 379 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccCHHHHHHHHHH-----hccchH
Confidence 2233345677999999999877766666666655431 2 39999999999765421222222211 000111
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.++..+ .....||+++.|+.+|++.+..+.
T Consensus 380 ~~g~~v----pvv~VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 380 KWGGDT----PMIPISASQGTNIDKLLETILLLA 409 (742)
T ss_pred hhCCCc----eEEEEECCCCCCHHHHHHhhhhhh
Confidence 122111 112468889999999999987654
No 158
>COG2262 HflX GTPases [General function prediction only]
Probab=99.57 E-value=3.5e-14 Score=133.39 Aligned_cols=168 Identities=23% Similarity=0.194 Sum_probs=111.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++.+.|+++|-|++|||||+|+|+|...+... .-..|.++....+.++++..+.+-||-||.+. .+ ..+...+...
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~d--~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~-LP-~~LV~AFksT 265 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGADVYVAD--QLFATLDPTTRRIELGDGRKVLLTDTVGFIRD-LP-HPLVEAFKST 265 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhccCeeccc--cccccccCceeEEEeCCCceEEEecCccCccc-CC-hHHHHHHHHH
Confidence 45689999999999999999999998875432 23345555555566656889999999999863 11 1222223222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+. ....+|++|.|+|+++|..... ......|.++--.. .|+|+|+||+|.+.+ ... +..+-..
T Consensus 266 LE-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~--~~~-----------~~~~~~~ 329 (411)
T COG2262 266 LE-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLED--EEI-----------LAELERG 329 (411)
T ss_pred HH-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCc--hhh-----------hhhhhhc
Confidence 22 2357899999999997643333 33444555542222 499999999998866 221 1111111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+ +....||+++.|++.|++.|...+...
T Consensus 330 ~~-------~~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 330 SP-------NPVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred CC-------CeEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 11 233478899999999999999888854
No 159
>PLN03108 Rab family protein; Provisional
Probab=99.57 E-value=1.1e-13 Score=123.24 Aligned_cols=159 Identities=14% Similarity=0.115 Sum_probs=92.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|.+++........ ..+........+.+ ++ ..+.++||||... +...
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~~~~~~~--~ti~~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~ 71 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSI 71 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CCccceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 3789999999999999999999876532211 11111111222223 33 3578999999432 1122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+.++|++|+|+|++++-+-.. ..++..+....... .|+++|+||+|.......+.+ ....+...
T Consensus 72 ~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~---------~~~~~~~~ 140 (210)
T PLN03108 72 TRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTE---------EGEQFAKE 140 (210)
T ss_pred HHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHH---------HHHHHHHH
Confidence 2334557899999999984332222 23334344333333 499999999997643111111 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..++ ..|++++.++.++|..+...+
T Consensus 141 ~~~~~~------e~Sa~~~~~v~e~f~~l~~~~ 167 (210)
T PLN03108 141 HGLIFM------EASAKTAQNVEEAFIKTAAKI 167 (210)
T ss_pred cCCEEE------EEeCCCCCCHHHHHHHHHHHH
Confidence 333333 356777899999887776443
No 160
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.56 E-value=1.3e-13 Score=118.28 Aligned_cols=158 Identities=19% Similarity=0.162 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|+++|.+|+|||||++++++........ +.+.... .....+. ....+.+|||||.... .....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~ 67 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYD--PTIEDSY-RKQVEIDGRQCDLEILDTAGTEQF-----------TAMRE 67 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccC--CcchheE-EEEEEECCEEEEEEEEeCCCcccc-----------hhhhH
Confidence 579999999999999999999776532211 1111111 1222221 2246789999996542 12223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+.+++++++|+|.+++-+-.. ..+...+...... ...|+++|+||.|.........++ ...+....+
T Consensus 68 ~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~~~~~~~~---------~~~~~~~~~ 137 (168)
T cd04177 68 LYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDDRQVSRED---------GVSLSQQWG 137 (168)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhccccCccCHHH---------HHHHHHHcC
Confidence 34556799999999884322222 2333444443321 234999999999976442111111 122233333
Q ss_pred -CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 -NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 -~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+++ ..||+++.++.+++..+...
T Consensus 138 ~~~~~------~~SA~~~~~i~~~f~~i~~~ 162 (168)
T cd04177 138 NVPFY------ETSARKRTNVDEVFIDLVRQ 162 (168)
T ss_pred CceEE------EeeCCCCCCHHHHHHHHHHH
Confidence 2233 36788899999999988653
No 161
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.56 E-value=9.9e-14 Score=118.13 Aligned_cols=157 Identities=17% Similarity=0.168 Sum_probs=91.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||++.+++........ ++........... ++ ..+.|+||||..... ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~~ 66 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD---PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SMR 66 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC---CchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------chH
Confidence 589999999999999999998766533211 1111111122323 33 357789999964421 112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++++|+|++++-+-.+ ..++..+....+ ....|+++|+||+|........... ...+....
T Consensus 67 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~~~~~~~~---------~~~~~~~~ 136 (163)
T cd04176 67 DLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESEREVSSAE---------GRALAEEW 136 (163)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhcCccCHHH---------HHHHHHHh
Confidence 233557799999999985432222 334444544322 1224999999999975431111111 12222323
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+..++ ..||+++.++.+++..+...
T Consensus 137 ~~~~~------~~Sa~~~~~v~~l~~~l~~~ 161 (163)
T cd04176 137 GCPFM------ETSAKSKTMVNELFAEIVRQ 161 (163)
T ss_pred CCEEE------EecCCCCCCHHHHHHHHHHh
Confidence 33333 35777889999999887653
No 162
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.56 E-value=9.8e-14 Score=122.49 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=93.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... . ...+.......+.+ .+ ..+.++||||.... .....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~~ 65 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPK-Y--RRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMRK 65 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcc-C--CCchhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHHH
Confidence 489999999999999999998765321 1 11111111222333 33 46889999996542 11223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH-hc
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ-LC 176 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~-~~ 176 (371)
..+.++|++++|+|++++.+-.. ..++..+...... ...|+++|+||+|..... ..+... ....... .+
T Consensus 66 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~-~~v~~~-------~~~~~~~~~~ 136 (198)
T cd04147 66 LSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLEEE-RQVPAK-------DALSTVELDW 136 (198)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccccc-ccccHH-------HHHHHHHhhc
Confidence 35667899999999985333222 2233344443321 224999999999976431 111100 0111111 11
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++ ..|++++.|+.+|++.+...+..
T Consensus 137 ~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~ 164 (198)
T cd04147 137 NCGFV------ETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred CCcEE------EecCCCCCCHHHHHHHHHHHhhc
Confidence 22233 36788899999999999876653
No 163
>CHL00071 tufA elongation factor Tu
Probab=99.56 E-value=9.6e-14 Score=135.80 Aligned_cols=140 Identities=18% Similarity=0.242 Sum_probs=91.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|++++|||||+|+|++....... ....+.|.......+.. ++..+.++||||+.+
T Consensus 9 ~~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~ 87 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (409)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH
Confidence 456689999999999999999999975221100 01134555544444444 667889999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+...+......+|++++|+|+..++...+...+..+... |. .++|+++||+|.... ....+.+
T Consensus 88 -----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~-g~---~~iIvvvNK~D~~~~--~~~~~~~ 150 (409)
T CHL00071 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQV-GV---PNIVVFLNKEDQVDD--EELLELV 150 (409)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEccCCCCH--HHHHHHH
Confidence 333333445577999999999977888887777776643 32 137899999998754 3332222
Q ss_pred cccCCchHHHHHHhcC
Q 040649 162 GLECPKPLKEILQLCD 177 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~ 177 (371)
.. .+..++..++
T Consensus 151 ~~----~l~~~l~~~~ 162 (409)
T CHL00071 151 EL----EVRELLSKYD 162 (409)
T ss_pred HH----HHHHHHHHhC
Confidence 21 2556666544
No 164
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.56 E-value=3.7e-14 Score=139.67 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=99.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CC---------------CCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SA---------------GSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~---------------~~~~~t~~~~~~~~~~~ 66 (371)
.++..+|+++|++++|||||++.|++..-... +. ...++|.......+.+
T Consensus 3 ~k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~- 81 (425)
T PRK12317 3 EKPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET- 81 (425)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-
Confidence 44668999999999999999999984321100 00 0246677776666666
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
++..+++|||||+.+. ...+ ......+|++++|+|++. ++.......+..+.. ++. .|+++|+
T Consensus 82 ~~~~i~liDtpG~~~~-------~~~~----~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~-~~~---~~iivvi 146 (425)
T PRK12317 82 DKYYFTIVDCPGHRDF-------VKNM----ITGASQADAAVLVVAADDAGGVMPQTREHVFLART-LGI---NQLIVAI 146 (425)
T ss_pred CCeEEEEEECCCcccc-------hhhH----hhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHH-cCC---CeEEEEE
Confidence 7789999999996542 1112 223456899999999986 555555555555543 342 3799999
Q ss_pred eCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 145 TGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 145 tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
||+|........+...... +..++..++.... .....+.||.++.|+.+
T Consensus 147 NK~Dl~~~~~~~~~~~~~~-----i~~~l~~~g~~~~-~~~ii~iSA~~g~gi~~ 195 (425)
T PRK12317 147 NKMDAVNYDEKRYEEVKEE-----VSKLLKMVGYKPD-DIPFIPVSAFEGDNVVK 195 (425)
T ss_pred EccccccccHHHHHHHHHH-----HHHHHHhhCCCcC-cceEEEeecccCCCccc
Confidence 9999875322223322222 4555554442100 00112357777788765
No 165
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.56 E-value=2e-13 Score=118.07 Aligned_cols=161 Identities=16% Similarity=0.081 Sum_probs=93.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||+..+++........ .|....+ ..+.. ++ ..+.++||||... +...
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~----~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYI----PTVFDNYSANVMV-DGKPVNLGLWDTAGQED-----------YDRL 65 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCC----CcceeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 589999999999999999998765422211 1111111 12222 33 4678999999543 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||.|+.... .+.+..... .......
T Consensus 66 ~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 141 (174)
T cd01871 66 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQGL 141 (174)
T ss_pred hhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccCh-hhHHHHhhccCCCCCHHHHH
Confidence 2345678899999999985433222 224444544322 2 4999999999975331 222211111 0111223
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+....+. .++ ..||+++.|++++++.+..
T Consensus 142 ~~~~~~~~~~~~------e~Sa~~~~~i~~~f~~l~~ 172 (174)
T cd01871 142 AMAKEIGAVKYL------ECSALTQKGLKTVFDEAIR 172 (174)
T ss_pred HHHHHcCCcEEE------EecccccCCHHHHHHHHHH
Confidence 33333332 222 4688899999999988764
No 166
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.55 E-value=1.5e-13 Score=119.05 Aligned_cols=162 Identities=21% Similarity=0.211 Sum_probs=94.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|++|+|||||++.+++........ +.+.......... .+ ..+.++||||..+. ....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~~-----------~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY---PTIENTFSKIIRY-KGQDYHLEIVDTAGQDEY-----------SILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC---cchhhhEEEEEEE-CCEEEEEEEEECCChHhh-----------HHHH
Confidence 589999999999999999999776432211 1111111122222 32 35789999996431 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|.+++.+-.. ..++..+....+. ...|+++|+||+|.......... ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQRQVSTE---------EGKELAESW 136 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhcCccCHH---------HHHHHHHHc
Confidence 234556799999999884322221 2223333333221 22499999999997643111111 122333333
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+.+++. .|++++.++.+++..+.+.+....
T Consensus 137 ~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~~ 166 (180)
T cd04137 137 GAAFLE------SSARENENVEEAFELLIEEIEKVE 166 (180)
T ss_pred CCeEEE------EeCCCCCCHHHHHHHHHHHHHHhc
Confidence 433333 567788999999999987666543
No 167
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.55 E-value=4.4e-14 Score=121.64 Aligned_cols=163 Identities=17% Similarity=0.079 Sum_probs=93.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|++|+|||||++.+++....... ..|....+ ..... ++ ..+.++||||...... .
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 64 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYDR-----------L 64 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEeCCCcccccc-----------c
Confidence 37999999999999999999987653221 11111111 12223 33 3477999999654211 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH---hcc-cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY---LGL-ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~---l~~-~~~~~l~ 170 (371)
....+.++|++++|+|..++-+-.. ..++..+... ... .|+++|+||+|..... ...... ... .......
T Consensus 65 ~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~~--~piivv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~ 140 (174)
T cd04135 65 RPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-APN--VPYLLVGTQIDLRDDP-KTLARLNDMKEKPVTVEQGQ 140 (174)
T ss_pred ccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CCC--CCEEEEeEchhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 2234667899999999985433222 2344555443 223 4999999999976441 111111 000 0011123
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.+....+...+ ...||+++.|++++++.+...
T Consensus 141 ~~~~~~~~~~~-----~e~Sa~~~~gi~~~f~~~~~~ 172 (174)
T cd04135 141 KLAKEIGAHCY-----VECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred HHHHHcCCCEE-----EEecCCcCCCHHHHHHHHHHH
Confidence 33333332211 136888899999999887643
No 168
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.54 E-value=1.1e-13 Score=118.32 Aligned_cols=159 Identities=17% Similarity=0.192 Sum_probs=89.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|++|+|||||++.+++...... . .+.+.......... ++. .+.+|||||...... ... .
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~------~~~----~ 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGE-Y--DPNLESLYSRQVTI-DGEQVSLEILDTAGQQQADT------EQL----E 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccc-c--CCChHHhceEEEEE-CCEEEEEEEEECCCCccccc------chH----H
Confidence 489999999999999999986543211 1 11111111122223 333 578999999763100 001 1
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+..........|+++|.||+|.......... ....+....+
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~---------~~~~~~~~~~ 137 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTE---------EGEKLASELG 137 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHH---------HHHHHHHHcC
Confidence 22446799999999985433222 2334445543210112499999999996533111111 1223334444
Q ss_pred CceEeecCcchhhHhhH-HhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRT-EQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~-~~i~~Ll~~i~~~~ 208 (371)
..++. .|++++ .++.+++..+.+.+
T Consensus 138 ~~~~e------~Sa~~~~~~v~~~f~~l~~~~ 163 (165)
T cd04146 138 CLFFE------VSAAEDYDGVHSVFHELCREV 163 (165)
T ss_pred CEEEE------eCCCCCchhHHHHHHHHHHHH
Confidence 33333 566666 58999999887654
No 169
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.54 E-value=2.9e-13 Score=117.80 Aligned_cols=164 Identities=15% Similarity=0.109 Sum_probs=99.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+++|.+|+|||||++.+++....... ..|....+ ..... ++ ..+.||||+|-.. +.
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~----~pT~~~~~~~~~~~-~~~~~~l~iwDtaG~e~-----------~~ 67 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEI-DTQRIELSLWDTSGSPY-----------YD 67 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCceeeeeEEEEEE-CCEEEEEEEEECCCchh-----------hH
Confidence 4578999999999999999999976643221 11221111 12222 33 3688999999432 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCch
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKP 168 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~ 168 (371)
.....++.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||.|+.... ..+..... .-....
T Consensus 68 ~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~~~~~~~~~v~~~~ 143 (182)
T cd04172 68 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDL-TTLVELSNHRQTPVSYDQ 143 (182)
T ss_pred hhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEeEChhhhcCh-hhHHHHHhcCCCCCCHHH
Confidence 233456788999999999986544333 345556665543 3 4999999999975321 11111000 001122
Q ss_pred HHHHHHhcCC-ceEeecCcchhhHhhHHh-HHHHHHHHHHH
Q 040649 169 LKEILQLCDN-RWVLFDNKTKYEAKRTEQ-VQQLLSLVNAV 207 (371)
Q Consensus 169 l~~~~~~~~~-r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~ 207 (371)
...+....+. .++ ..||+++.+ |.+++..+...
T Consensus 144 ~~~~a~~~~~~~~~------E~SAk~~~n~v~~~F~~~~~~ 178 (182)
T cd04172 144 GANMAKQIGAATYI------ECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred HHHHHHHcCCCEEE------ECCcCCCCCCHHHHHHHHHHH
Confidence 4455555443 333 368888998 99999887653
No 170
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.54 E-value=4.9e-14 Score=121.48 Aligned_cols=161 Identities=17% Similarity=0.166 Sum_probs=92.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|++|+|||||++.+++...... .. .|.... ...+.+ ++ ..+.++||||.... ...
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~-~~---~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEV-YV---PTVFENYVADIEV-DGKQVELALWDTAGQEDY-----------DRL 65 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCC-CC---CccccceEEEEEE-CCEEEEEEEEeCCCchhh-----------hhc
Confidence 5799999999999999999998664322 11 111111 122233 33 36789999996431 111
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC-----CchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC-----PKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~-----~~~l 169 (371)
....+.++|++++|+|++++-+-.. ..++..+....+ . .|+++|.||+|.... ......+.... ....
T Consensus 66 ~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~i~~~~~~~v~~~~~ 140 (175)
T cd01870 66 RPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRND--EHTRRELAKMKQEPVKPEEG 140 (175)
T ss_pred cccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhcccC--hhhhhhhhhccCCCccHHHH
Confidence 2234578899999999984422111 223444443322 2 499999999997643 21111111000 0112
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.+...++. .++ ..||+++.|+.++++.+...
T Consensus 141 ~~~~~~~~~~~~~------~~Sa~~~~~v~~lf~~l~~~ 173 (175)
T cd01870 141 RDMANKIGAFGYM------ECSAKTKEGVREVFEMATRA 173 (175)
T ss_pred HHHHHHcCCcEEE------EeccccCcCHHHHHHHHHHH
Confidence 333333332 222 36888899999999988754
No 171
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.54 E-value=1e-13 Score=125.64 Aligned_cols=136 Identities=21% Similarity=0.216 Sum_probs=87.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc--C--------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKA--S--------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~--~--------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+|+++|++|+|||||+++|+...-... + ....+.|.......+.+ .+..+++|||||+.+.
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 489999999999999999975321100 0 00112333344445555 7889999999998753
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE 164 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~ 164 (371)
..... .++..+|++++|+|+..+.......++..+... + .|+++|+||+|.... ...+.
T Consensus 78 -----~~~~~----~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~-~----~P~iivvNK~D~~~a---~~~~~---- 136 (237)
T cd04168 78 -----IAEVE----RSLSVLDGAILVISAVEGVQAQTRILWRLLRKL-N----IPTIIFVNKIDRAGA---DLEKV---- 136 (237)
T ss_pred -----HHHHH----HHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECccccCC---CHHHH----
Confidence 12222 334456999999999977776666666666542 2 399999999997754 22333
Q ss_pred CCchHHHHHHhcCCceEeec
Q 040649 165 CPKPLKEILQLCDNRWVLFD 184 (371)
Q Consensus 165 ~~~~l~~~~~~~~~r~~~f~ 184 (371)
+..+...++.+++++.
T Consensus 137 ----~~~i~~~~~~~~~~~~ 152 (237)
T cd04168 137 ----YQEIKEKLSSDIVPMQ 152 (237)
T ss_pred ----HHHHHHHHCCCeEEEE
Confidence 3334455566666654
No 172
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.54 E-value=3.8e-13 Score=121.22 Aligned_cols=167 Identities=13% Similarity=0.059 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||||++.+++...... . ..|....+. .+.. .....+.||||||-.. +..
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~-y---~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~ 76 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPET-Y---VPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDN 76 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhcCCCCCC-c---CCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHH
Confidence 347899999999999999999997764322 1 112111111 1222 1224788999999432 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l 169 (371)
....++.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||+|+.... ..+..... .......
T Consensus 77 ~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~-~--~piilVgNK~DL~~~~-~~~~~l~~~~~~~Vs~~e~ 152 (232)
T cd04174 77 VRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP-S--TRILLIGCKTDLRTDL-STLMELSNQKQAPISYEQG 152 (232)
T ss_pred HHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-chhhhhccccCCcCCHHHH
Confidence 33456789999999999985544332 345555665443 2 3999999999965321 11110000 0011224
Q ss_pred HHHHHhcCCc-eEeecCcchhhHhhHH-hHHHHHHHHHHHHh
Q 040649 170 KEILQLCDNR-WVLFDNKTKYEAKRTE-QVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~r-~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~ 209 (371)
..+....+.. ++ ..||+++. ++++++..+...+.
T Consensus 153 ~~~a~~~~~~~~~------EtSAktg~~~V~e~F~~~~~~~~ 188 (232)
T cd04174 153 CALAKQLGAEVYL------ECSAFTSEKSIHSIFRSASLLCL 188 (232)
T ss_pred HHHHHHcCCCEEE------EccCCcCCcCHHHHHHHHHHHHH
Confidence 4555555542 32 36888887 79999998876543
No 173
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.53 E-value=3.6e-13 Score=112.73 Aligned_cols=153 Identities=18% Similarity=0.186 Sum_probs=87.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|.+|+|||||+|.+++... +... ..+.+.......+.. ++ ..+.++||||..+.. .. .
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~-~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~----~~-------~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKF-ITEY-KPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR----AI-------R 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC-cCcC-CCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch----HH-------H
Confidence 6899999999999999999998883 3322 223333333333344 55 578899999955421 11 1
Q ss_pred hhhcCCceEEEEEEeCCCC---CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSR---FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
......++.+++++|.... +..........+...... ..|+++|+||+|.... . ... .....+.
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~--~-~~~--------~~~~~~~ 134 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA--K-LKT--------HVAFLFA 134 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc--h-hhH--------HHHHHHh
Confidence 1122234566666665422 111112333334433322 3499999999998754 2 111 1222333
Q ss_pred hcC-CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 175 LCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 175 ~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+ .+++ +.|+..+.|+.++++.+.
T Consensus 135 ~~~~~~~~------~~sa~~~~gv~~~~~~l~ 160 (161)
T TIGR00231 135 KLNGEPII------PLSAETGKNIDSAFKIVE 160 (161)
T ss_pred hccCCceE------EeecCCCCCHHHHHHHhh
Confidence 222 2222 357778899999988764
No 174
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.53 E-value=3.5e-13 Score=118.28 Aligned_cols=164 Identities=16% Similarity=0.119 Sum_probs=96.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.++....... ...|....+. .... ++ ..+.|+||||... +...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~e~-----------~~~l 67 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAV-DGRTVSLNLWDTAGQEE-----------YDRL 67 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 6899999999999999999987654222 1122211111 1222 33 4688999999532 2223
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
...++.++|++|+|+|++++-+-... .++..+....+ . .|+++|.||.|+.... ...+..... .......
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~-~~~~~~~~~~~~~v~~~~~~ 143 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHCP-N--VPILLVGTKKDLRNDA-DTLKKLKEQGQAPITPQQGG 143 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEeChhhhcCh-hhHHHHhhccCCCCCHHHHH
Confidence 34457789999999999854332222 23343443322 3 4999999999975431 111111110 0011223
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+....+. .++ ..||+++.|+.+++..+.+.+.
T Consensus 144 ~~a~~~~~~~~~------e~SAk~g~~v~e~f~~l~~~~~ 177 (191)
T cd01875 144 ALAKQIHAVKYL------ECSALNQDGVKEVFAEAVRAVL 177 (191)
T ss_pred HHHHHcCCcEEE------EeCCCCCCCHHHHHHHHHHHHh
Confidence 34333331 233 3678889999999999886553
No 175
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.53 E-value=1.7e-13 Score=126.44 Aligned_cols=115 Identities=20% Similarity=0.246 Sum_probs=81.1
Q ss_pred EEEEEcCCCCcHHHHHHHHh---CCCcccc-------------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 21 TVVLLGRTGNGKSATGNSIL---GRRAFKA-------------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~---g~~~~~~-------------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+|+++|++|+|||||+++|+ |...... .....++|.......+.+ .+..+++|||||+.+.
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~df-- 77 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVDF-- 77 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHHH--
Confidence 48999999999999999996 3211100 011235566666666667 7889999999997652
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+. ..++..+|++++|+|+..+....+...+..+... + .|+++++||+|....
T Consensus 78 -----~~~~----~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~-~----~p~ivviNK~D~~~a 131 (270)
T cd01886 78 -----TIEV----ERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRY-N----VPRIAFVNKMDRTGA 131 (270)
T ss_pred -----HHHH----HHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 2223 3344556999999999877777777777766542 2 389999999997754
No 176
>PLN03127 Elongation factor Tu; Provisional
Probab=99.53 E-value=1.9e-13 Score=134.58 Aligned_cols=168 Identities=15% Similarity=0.169 Sum_probs=104.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC------Cc-cc-----c--CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR------RA-FK-----A--SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~------~~-~~-----~--~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||++.|+|. .. +. . .....+.|.......+.. ++..++++||||+.+
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~ 136 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD 136 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc
Confidence 446789999999999999999999843 11 00 0 011145666655555544 667899999999754
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+...+......+|++++|+|+..+....+...+..+... +. | +|+++||+|..+. ..+.+.
T Consensus 137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~-gi----p~iIvviNKiDlv~~--~~~~~~ 198 (447)
T PLN03127 137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQV-GV----PSLVVFLNKVDVVDD--EELLEL 198 (447)
T ss_pred -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC----CeEEEEEEeeccCCH--HHHHHH
Confidence 222222233458999999999877888887777777653 32 5 6789999998754 233332
Q ss_pred hcccCCchHHHHHHhcC-----CceEeecCcchhhHhhH-------HhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRT-------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~-------~~i~~Ll~~i~~~~~ 209 (371)
+.. .++.++..++ .++++.+.. ++.++ .++..|++.+..+++
T Consensus 199 i~~----~i~~~l~~~~~~~~~vpiip~Sa~---sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 199 VEM----ELRELLSFYKFPGDEIPIIRGSAL---SALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred HHH----HHHHHHHHhCCCCCcceEEEeccc---eeecCCCcccccchHHHHHHHHHHhCC
Confidence 221 2445554432 123322221 12222 347888888887765
No 177
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.53 E-value=3.3e-13 Score=117.07 Aligned_cols=162 Identities=15% Similarity=0.084 Sum_probs=96.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||++.+++...... . ..|....+ ..+.. ++ ..+.+|||||... +...
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~-~---~~t~~~~~~~~~~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPET-Y---VPTVFENYTASFEI-DEQRIELSLWDTSGSPY-----------YDNV 65 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC-c---CCceEEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhc
Confidence 5799999999999999999998764322 1 11221111 12223 33 4688999999432 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l~ 170 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||.|+.... ......-. .-......
T Consensus 66 ~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~-~--~~iilVgnK~DL~~~~-~~~~~~~~~~~~~v~~~e~~ 141 (178)
T cd04131 66 RPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP-N--TKVLLVGCKTDLRTDL-STLMELSHQRQAPVSYEQGC 141 (178)
T ss_pred chhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC-C--CCEEEEEEChhhhcCh-hHHHHHHhcCCCCCCHHHHH
Confidence 3345778999999999986544333 345556665543 3 3999999999975321 11111100 00111234
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHh-HHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQ-VQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~ 207 (371)
.+....+. .++ ..||+++.+ +.+++..+..+
T Consensus 142 ~~a~~~~~~~~~------E~SA~~~~~~v~~~F~~~~~~ 174 (178)
T cd04131 142 AIAKQLGAEIYL------ECSAFTSEKSVRDIFHVATMA 174 (178)
T ss_pred HHHHHhCCCEEE------ECccCcCCcCHHHHHHHHHHH
Confidence 45544443 222 368888885 99999887763
No 178
>PRK12735 elongation factor Tu; Reviewed
Probab=99.53 E-value=2.4e-13 Score=132.45 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=102.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc------cc--------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA------FK--------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|++++|||||+++|++... +. ......+.|.......+.. ++..++++||||+.+
T Consensus 9 ~~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (396)
T PRK12735 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD 87 (396)
T ss_pred CCCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH
Confidence 45568999999999999999999996211 00 0001235555554444444 567899999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+...+......+|++++|+|+..+........+..+.. .|. | +++|+||+|.... ....+.
T Consensus 88 -----------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~-~gi----~~iivvvNK~Dl~~~--~~~~~~ 149 (396)
T PRK12735 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQ-VGV----PYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHH-cCC----CeEEEEEEecCCcch--HHHHHH
Confidence 33334445567899999999987676666666665553 332 5 5568999998743 222222
Q ss_pred hcccCCchHHHHHHhcCC-----ceEeecCcchhhHhhH----------HhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRT----------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~----------~~i~~Ll~~i~~~~~ 209 (371)
+.. .+..++..++. ++++ .|+.++ .++..|++.+..+++
T Consensus 150 ~~~----ei~~~l~~~~~~~~~~~ii~------~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 150 VEM----EVRELLSKYDFPGDDTPIIR------GSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HHH----HHHHHHHHcCCCcCceeEEe------cchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 221 24555554432 2232 344443 367888988888764
No 179
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.52 E-value=3.5e-13 Score=115.91 Aligned_cols=161 Identities=15% Similarity=0.051 Sum_probs=92.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+++|.+|+|||||++.+++....+... .+............+ ++ ..+.++||+|-.... .
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~-~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~ 69 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAY-SPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------L 69 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccC-CCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------c
Confidence 45789999999999999999999877530111 111111122222333 33 367789999854321 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....++.++|++++|+|++++-+ ......++.. +......|+++|+||+|..... .. .. .....+...
T Consensus 70 ~~~~~~~~~d~~llv~d~~~~~s--~~~~~~~~~~-~~~~~~~p~iiv~NK~Dl~~~~--~~--~~-----~~~~~~~~~ 137 (169)
T cd01892 70 LNDAELAACDVACLVYDSSDPKS--FSYCAEVYKK-YFMLGEIPCLFVAAKADLDEQQ--QR--YE-----VQPDEFCRK 137 (169)
T ss_pred cchhhhhcCCEEEEEEeCCCHHH--HHHHHHHHHH-hccCCCCeEEEEEEcccccccc--cc--cc-----cCHHHHHHH
Confidence 12233567899999999974422 1122233332 2111134999999999975431 10 00 012233333
Q ss_pred cCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+. .++ ..|++++.++.+|++.+...+-
T Consensus 138 ~~~~~~~------~~Sa~~~~~v~~lf~~l~~~~~ 166 (169)
T cd01892 138 LGLPPPL------HFSSKLGDSSNELFTKLATAAQ 166 (169)
T ss_pred cCCCCCE------EEEeccCccHHHHHHHHHHHhh
Confidence 332 122 3577788999999999877643
No 180
>PRK12736 elongation factor Tu; Reviewed
Probab=99.52 E-value=3.6e-13 Score=131.12 Aligned_cols=166 Identities=16% Similarity=0.210 Sum_probs=105.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK--------------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||+++|++...-. ......+.|.......+.. ++..+++|||||+.+
T Consensus 9 ~k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~ 87 (394)
T PRK12736 9 SKPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH
Confidence 4456899999999999999999998742100 0001235565554444443 567899999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+...+......+|++++|+|++.+....+...+..+... |. .++|+++||+|.... ....+.+
T Consensus 88 -----------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g~---~~~IvviNK~D~~~~--~~~~~~i 150 (394)
T PRK12736 88 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYLVVFLNKVDLVDD--EELLELV 150 (394)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-CC---CEEEEEEEecCCcch--HHHHHHH
Confidence 222233334567999999999877777777777776543 32 147889999998743 2232222
Q ss_pred cccCCchHHHHHHhcCC-----ceEeecCcchhhHhhH--------HhHHHHHHHHHHHHh
Q 040649 162 GLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRT--------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~--------~~i~~Ll~~i~~~~~ 209 (371)
.. .+..++...+. ++++ .|+.++ .++..|++.+...++
T Consensus 151 ~~----~i~~~l~~~~~~~~~~~ii~------vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 151 EM----EVRELLSEYDFPGDDIPVIR------GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred HH----HHHHHHHHhCCCcCCccEEE------eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 21 25555554442 3344 344443 367889988888765
No 181
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.52 E-value=5.9e-13 Score=115.25 Aligned_cols=164 Identities=18% Similarity=0.130 Sum_probs=98.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|.+|+|||||+..++....... . ..|....+ ..... ++ ..+.|+||+|.... ...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~-~---~~Ti~~~~~~~~~~-~~~~v~l~i~Dt~G~~~~-----------~~~ 65 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTD-Y---IPTVFDNFSANVSV-DGNTVNLGLWDTAGQEDY-----------NRL 65 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCC-C---CCcceeeeEEEEEE-CCEEEEEEEEECCCCccc-----------ccc
Confidence 5799999999999999999997664222 1 11211111 12222 33 47889999996542 222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH-hcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY-LGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~-l~~~~~~~l~~~~ 173 (371)
....+.++|++|+|+|++++-+-.. ..++..+....+ . .|+++|.||+|+........... .........+.+.
T Consensus 66 ~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a 142 (176)
T cd04133 66 RPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELR 142 (176)
T ss_pred chhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHH
Confidence 2345678899999999986544333 245555654433 3 49999999999754310000000 0000111233444
Q ss_pred HhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 174 QLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 174 ~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+.. ++ ..||+++.+|.+++..+.+.+
T Consensus 143 ~~~~~~~~~------E~SAk~~~nV~~~F~~~~~~~ 172 (176)
T cd04133 143 KQIGAAAYI------ECSSKTQQNVKAVFDAAIKVV 172 (176)
T ss_pred HHcCCCEEE------ECCCCcccCHHHHHHHHHHHH
Confidence 443332 22 368889999999999988765
No 182
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.51 E-value=7.6e-14 Score=126.99 Aligned_cols=163 Identities=18% Similarity=0.228 Sum_probs=106.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|||+|++|||||+|.|+|... .......+|..+......+ +|-.+.++|+||+..........+.++...+
T Consensus 62 Gda~v~lVGfPsvGKStLL~~LTnt~s--eva~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~~vlsv~ 138 (365)
T COG1163 62 GDATVALVGFPSVGKSTLLNKLTNTKS--EVADYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGRQVLSVA 138 (365)
T ss_pred CCeEEEEEcCCCccHHHHHHHHhCCCc--cccccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcceeeeee
Confidence 347999999999999999999999875 3333455555555555556 8899999999999876444333344444443
Q ss_pred hhhcCCceEEEEEEeCCC------------------------------------------CCCHHHHHHHHH--------
Q 040649 98 GMAKDGIHAVLLVFSVRS------------------------------------------RFSQEEEAAVHR-------- 127 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~------------------------------------------~~~~~~~~~l~~-------- 127 (371)
..+|++++|+|+.. +++..+...++.
T Consensus 139 ----R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 139 ----RNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred ----ccCCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcc
Confidence 45599999998873 233222222222
Q ss_pred ---------------HHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHh
Q 040649 128 ---------------LQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAK 192 (371)
Q Consensus 128 ---------------l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~ 192 (371)
+..+.++..+.|.+.|+||+|..+. +.++. +.... .. ...|+.
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~--e~~~~------------l~~~~--~~------v~isa~ 272 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL--EELER------------LARKP--NS------VPISAK 272 (365)
T ss_pred cceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH--HHHHH------------HHhcc--ce------EEEecc
Confidence 2224455557899999999997754 33322 22211 22 335777
Q ss_pred hHHhHHHHHHHHHHHHh
Q 040649 193 RTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 193 ~~~~i~~Ll~~i~~~~~ 209 (371)
++.++++|.+.+.+.+.
T Consensus 273 ~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 273 KGINLDELKERIWDVLG 289 (365)
T ss_pred cCCCHHHHHHHHHHhhC
Confidence 78899999999887654
No 183
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.51 E-value=2.3e-13 Score=112.64 Aligned_cols=151 Identities=19% Similarity=0.146 Sum_probs=87.2
Q ss_pred EEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe---eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 24 LLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL---KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 24 lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
|+|++|+|||||+|+|++........ ..|. ........ ..+..+.++||||..+. .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~~---~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEEY---ETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCccc---ccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 58999999999999999877632211 1111 22222222 12567899999996642 1111334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHH--HHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAV--HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l--~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
...+|++++|+|++.+.+......+ ..+.... ....|+++|+||+|..... ...... ........+..
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ivv~nk~D~~~~~--~~~~~~------~~~~~~~~~~~ 135 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINKE--GENIPIILVGNKIDLPEER--VVSEEE------LAEQLAKELGV 135 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhc--cCCCcEEEEEecccccccc--chHHHH------HHHHHHhhcCC
Confidence 5678999999999854443333322 1122111 2235999999999987552 221111 01222333344
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.++. .|+..+.++.+++..+.
T Consensus 136 ~~~~------~s~~~~~~i~~~~~~l~ 156 (157)
T cd00882 136 PYFE------TSAKTGENVEELFEELA 156 (157)
T ss_pred cEEE------EecCCCCChHHHHHHHh
Confidence 4554 34555678888888763
No 184
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.51 E-value=3.6e-13 Score=122.84 Aligned_cols=159 Identities=17% Similarity=0.184 Sum_probs=92.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... . .+++.......+.. ++ ..+.||||||..+. .....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~-y--~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~-----------~~~~~ 66 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQ-Y--TPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF-----------PAMRR 66 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC-C--CCChhHhEEEEEEE-CCEEEEEEEEECCCChhh-----------hHHHH
Confidence 699999999999999999987664321 1 11111111222233 33 46789999996432 11122
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHh-------CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLF-------GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~-------~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
.++..+|++|+|+|++++-+-.. ..++..+.... ......|+++|+||+|.........++ +.
T Consensus 67 ~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~e---------i~ 137 (247)
T cd04143 67 LSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE---------VE 137 (247)
T ss_pred HHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHH---------HH
Confidence 34557899999999985432221 22333443321 011235999999999976431122221 22
Q ss_pred HHHHhc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 171 EILQLC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 171 ~~~~~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.++... +..++ ..||+++.|+++|+..+..+..
T Consensus 138 ~~~~~~~~~~~~------evSAktg~gI~elf~~L~~~~~ 171 (247)
T cd04143 138 QLVGGDENCAYF------EVSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred HHHHhcCCCEEE------EEeCCCCCCHHHHHHHHHHHhc
Confidence 333211 11223 3678889999999999987653
No 185
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.51 E-value=4e-13 Score=115.85 Aligned_cols=161 Identities=17% Similarity=0.115 Sum_probs=92.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+++++|++|+|||||++++++...... .. ++........... ++ ..+.+|||||.... ....
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~ 65 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGYPTE-YV--PTAFDNFSVVVLV-DGKPVRLQLCDTAGQDEF-----------DKLR 65 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCC-CC--CceeeeeeEEEEE-CCEEEEEEEEECCCChhh-----------cccc
Confidence 3689999999999999999987654322 11 1111111112222 33 46788999996432 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc----CCchHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE----CPKPLKE 171 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~----~~~~l~~ 171 (371)
..++.++|++|+|+|++++-+-.. ..++..+..... . .|+++|.||+|..... .....+.... .......
T Consensus 66 ~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~ 141 (173)
T cd04130 66 PLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNP-K--APIILVGTQADLRTDV-NVLIQLARYGEKPVSQSRAKA 141 (173)
T ss_pred ccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEeeChhhccCh-hHHHHHhhcCCCCcCHHHHHH
Confidence 335678899999999985433222 234555554322 2 4999999999976431 1111111100 0011223
Q ss_pred HHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 172 ILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 172 ~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+....+. .++ ..||+++.|+++|++.+.
T Consensus 142 ~a~~~~~~~~~------e~Sa~~~~~v~~lf~~~~ 170 (173)
T cd04130 142 LAEKIGACEYI------ECSALTQKNLKEVFDTAI 170 (173)
T ss_pred HHHHhCCCeEE------EEeCCCCCCHHHHHHHHH
Confidence 3333332 233 367888999999998763
No 186
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.51 E-value=3.9e-13 Score=123.86 Aligned_cols=116 Identities=17% Similarity=0.174 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc--ccCCC------------------CCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF--KASAG------------------SSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~--~~~~~------------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
++|+|+|++|+|||||+++|+...-. ..+.. ..+.+.......+.+ .+..+++|||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 68999999999999999999843211 00000 012233333445555 7889999999997
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+. ..... .++..+|++++|+|++.++......++..+.. . . .|+++++||+|....
T Consensus 82 ~df-------~~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~-~--~--~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDF-------SEDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRL-R--G--IPIITFINKLDREGR 138 (267)
T ss_pred hHH-------HHHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHh-c--C--CCEEEEEECCccCCC
Confidence 642 12222 23346699999999987666555555544432 1 2 399999999997654
No 187
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.50 E-value=5.9e-13 Score=135.09 Aligned_cols=166 Identities=16% Similarity=0.220 Sum_probs=104.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-ccccC-------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR-AFKAS-------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
.+|+++|+.++|||||+++|+... .+... ....++|.......+.+ .+..++||||||+.++
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~DF--- 77 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHADF--- 77 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHHH---
Confidence 589999999999999999998421 11111 01135666666666777 7899999999997652
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLEC 165 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~ 165 (371)
..++.. ++..+|++++|+|+..+.......++..+... . .|+++|+||+|..... ....+..
T Consensus 78 ----~~ev~~----~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a~---~~~v~~e-- 139 (594)
T TIGR01394 78 ----GGEVER----VLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSAR---PDEVVDE-- 139 (594)
T ss_pred ----HHHHHH----HHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCcC---HHHHHHH--
Confidence 223333 34456999999999876666666666666542 2 3889999999976442 2222221
Q ss_pred CchHHHHHHhcCCc--eEeecCcchhhHhhH----------HhHHHHHHHHHHHHhhc
Q 040649 166 PKPLKEILQLCDNR--WVLFDNKTKYEAKRT----------EQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 166 ~~~l~~~~~~~~~r--~~~f~~~~~~sa~~~----------~~i~~Ll~~i~~~~~~~ 211 (371)
+..++..++.. ...| +....||+.+ .++..|++.+.+.++..
T Consensus 140 ---i~~l~~~~g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 140 ---VFDLFAELGADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred ---HHHHHHhhccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 23333222110 0000 1122455555 37999999998887754
No 188
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.50 E-value=2.6e-13 Score=134.76 Aligned_cols=168 Identities=13% Similarity=0.091 Sum_probs=100.4
Q ss_pred CCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CCC-----------------CCcccee
Q 040649 9 DWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SAG-----------------SSAITKT 57 (371)
Q Consensus 9 ~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~~-----------------~~~~t~~ 57 (371)
.|...+...+..+|+++|+.++|||||++.|+...-... +.. ..++|..
T Consensus 17 ~~~~~~~~~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid 96 (474)
T PRK05124 17 AYLHAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITID 96 (474)
T ss_pred HHHhhccccCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeE
Confidence 344455556779999999999999999999975432110 100 1245555
Q ss_pred EEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCC
Q 040649 58 CEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIF 137 (371)
Q Consensus 58 ~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~ 137 (371)
.....+.+ ++..++||||||+.+ +.. .+......+|++++|+|+..++...+...+..+.. ++.
T Consensus 97 ~~~~~~~~-~~~~i~~iDTPGh~~-------f~~----~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~-lg~--- 160 (474)
T PRK05124 97 VAYRYFST-EKRKFIIADTPGHEQ-------YTR----NMATGASTCDLAILLIDARKGVLDQTRRHSFIATL-LGI--- 160 (474)
T ss_pred eeEEEecc-CCcEEEEEECCCcHH-------HHH----HHHHHHhhCCEEEEEEECCCCccccchHHHHHHHH-hCC---
Confidence 55555555 677899999999532 222 22233467799999999987766555444444333 342
Q ss_pred CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
+++++|+||+|....+...+...... +..++..++. ..+....+.|++++.++..
T Consensus 161 ~~iIvvvNKiD~~~~~~~~~~~i~~~-----l~~~~~~~~~--~~~~~iipvSA~~g~ni~~ 215 (474)
T PRK05124 161 KHLVVAVNKMDLVDYSEEVFERIRED-----YLTFAEQLPG--NLDIRFVPLSALEGDNVVS 215 (474)
T ss_pred CceEEEEEeeccccchhHHHHHHHHH-----HHHHHHhcCC--CCCceEEEEEeecCCCccc
Confidence 38999999999874422333333332 4444443330 0111223356666676654
No 189
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=9.4e-13 Score=111.70 Aligned_cols=164 Identities=15% Similarity=0.217 Sum_probs=110.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
-.+|+|+|.+|+|||.|+..+.+.....+-.++.++ +.....+.+ +|. .+.||||.|- +.+...
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGV--Df~~rt~e~-~gk~iKlQIWDTAGQ-----------ERFrti 74 (205)
T KOG0084|consen 9 LFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGV--DFKIRTVEL-DGKTIKLQIWDTAGQ-----------ERFRTI 74 (205)
T ss_pred EEEEEEECCCCcChhhhhhhhccCCcchhhcceeee--EEEEEEeee-cceEEEEEeeecccc-----------HHHhhh
Confidence 468999999999999999999988775543333332 344444555 443 7899999993 224455
Q ss_pred HhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++.++|+||+|+|++.. |... ..++..+....+..+ |.++|.||+|+.+..-.+.+ ..+.+..
T Consensus 75 t~syYR~ahGii~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v--~~lLVGNK~Dl~~~~~v~~~---------~a~~fa~ 142 (205)
T KOG0084|consen 75 TSSYYRGAHGIIFVYDITKQESFNNV-KRWIQEIDRYASENV--PKLLVGNKCDLTEKRVVSTE---------EAQEFAD 142 (205)
T ss_pred hHhhccCCCeEEEEEEcccHHHhhhH-HHHHHHhhhhccCCC--CeEEEeeccccHhheecCHH---------HHHHHHH
Confidence 66778999999999999832 3222 345556666555544 99999999997644211111 1244555
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
..+.+.+ .++||+.+.++.+.+..+...+....+
T Consensus 143 ~~~~~~f-----~ETSAK~~~NVe~~F~~la~~lk~~~~ 176 (205)
T KOG0084|consen 143 ELGIPIF-----LETSAKDSTNVEDAFLTLAKELKQRKG 176 (205)
T ss_pred hcCCcce-----eecccCCccCHHHHHHHHHHHHHHhcc
Confidence 5555421 236888889999999988876665544
No 190
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=3.2e-13 Score=114.11 Aligned_cols=163 Identities=21% Similarity=0.203 Sum_probs=106.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|.+|+|||||+-...-........+..+..... ..... .....+-||||.|.-. +....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~t--ktv~~~~~~ikfeIWDTAGQER-----------y~sla 71 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLT--KTVTVDDNTIKFEIWDTAGQER-----------YHSLA 71 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEE--EEEEeCCcEEEEEEEEcCCccc-----------ccccc
Confidence 3789999999999999998776555433222222222111 12222 1224677999999542 45566
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.+++.+++++|+|+|+++.-+ ..-+.++..|+...++.+ -+.+|.||+|+........++ .+.+....
T Consensus 72 pMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~--vialvGNK~DL~~~R~V~~~e---------a~~yAe~~ 140 (200)
T KOG0092|consen 72 PMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNI--VIALVGNKADLLERREVEFEE---------AQAYAESQ 140 (200)
T ss_pred cceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCe--EEEEecchhhhhhcccccHHH---------HHHHHHhc
Confidence 788999999999999984322 123567777777666443 566799999988642233332 34455543
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+--++ .+||+++.++.+++..|...++..
T Consensus 141 gll~~------ETSAKTg~Nv~~if~~Ia~~lp~~ 169 (200)
T KOG0092|consen 141 GLLFF------ETSAKTGENVNEIFQAIAEKLPCS 169 (200)
T ss_pred CCEEE------EEecccccCHHHHHHHHHHhccCc
Confidence 43333 368899999999999998877754
No 191
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.49 E-value=3.6e-13 Score=122.09 Aligned_cols=163 Identities=19% Similarity=0.167 Sum_probs=110.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|++||.|++|||||+|+|..... ....+..+|..++.....+.+...++|-|.||+......+.-....+.+.+..
T Consensus 197 advGLVG~PNAGKSTLL~als~AKp--kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~FLrHiER 274 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALSRAKP--KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYKFLRHIER 274 (366)
T ss_pred cccceecCCCCcHHHHHHHhhccCC--cccccceeeeccccceeeccccceeEeccCccccccccccCcccHHHHHHHHh
Confidence 4689999999999999999997765 33445566666666666664445699999999998766666677778887776
Q ss_pred hcCCceEEEEEEeCCCC--CCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 100 AKDGIHAVLLVFSVRSR--FSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~--~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+ +.++||+|.+.+ .++.+ ...|..=.+.+.. ...+|.++|.||+|..+. -+.+ +..+.+.
T Consensus 275 ~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea----e~~~--------l~~L~~~ 338 (366)
T KOG1489|consen 275 C----KGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA----EKNL--------LSSLAKR 338 (366)
T ss_pred h----ceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH----HHHH--------HHHHHHH
Confidence 6 999999999844 13322 2222211122222 234599999999997533 1111 3345554
Q ss_pred cCCc-eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..+. +++ .||+.++++..|+..+..
T Consensus 339 lq~~~V~p------vsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 339 LQNPHVVP------VSAKSGEGLEELLNGLRE 364 (366)
T ss_pred cCCCcEEE------eeeccccchHHHHHHHhh
Confidence 4444 444 577788999999887654
No 192
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.49 E-value=2.3e-13 Score=117.77 Aligned_cols=160 Identities=18% Similarity=0.229 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|+.||||||+++.|.+..... ..+|.......+.+ .+..+.++|.+|-.. +...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 456899999999999999999999765422 22233444555556 788999999999432 2334
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~ 173 (371)
...++.++|++|||+|.+++- .-......|..++... ...|+++++||.|..+.. ...+..++.- ..+.
T Consensus 75 w~~y~~~~~~iIfVvDssd~~--~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~~~i~~~l~l------~~l~ 146 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPE--RLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSEEEIKEYLGL------EKLK 146 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGG--GHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTHHHHHHHTTG------GGTT
T ss_pred ceeeccccceeEEEEecccce--eecccccchhhhcchhhcccceEEEEeccccccCcchhhHHHhhhhh------hhcc
Confidence 556678899999999998321 1122333444444322 235999999999977541 1223333321 1111
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...++..+ ..|+.++.|+.+.++++.+.
T Consensus 147 --~~~~~~v~----~~sa~~g~Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 147 --NKRPWSVF----SCSAKTGEGVDEGLEWLIEQ 174 (175)
T ss_dssp --SSSCEEEE----EEBTTTTBTHHHHHHHHHHH
T ss_pred --cCCceEEE----eeeccCCcCHHHHHHHHHhc
Confidence 12333333 24677889999999998764
No 193
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.49 E-value=2e-12 Score=114.23 Aligned_cols=171 Identities=16% Similarity=0.126 Sum_probs=97.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE--EEeEEee------CCcEEEEEeCCCCCCCCcchHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE--MKTTVLK------DGQVVNVIDTPGLFDSSAESEYVSK 91 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~~------~~~~i~liDTPG~~~~~~~~~~~~~ 91 (371)
.+|+++|.+|+|||||++.+++....... ..|..+. ...+.+. ....+.|+||+|...
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~----~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~---------- 66 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRP----SWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES---------- 66 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCCCCC----CcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh----------
Confidence 37999999999999999999987653321 1222221 1222221 123688999999532
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhC-----------------CCCCCeEEEEEeCCCCCCCc
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFG-----------------KKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~ilv~tk~D~~~~~ 153 (371)
+.......+.++|++|+|+|++++-+-.. ..++..+....+ .....|+++|.||.|+....
T Consensus 67 -~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r 145 (202)
T cd04102 67 -VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK 145 (202)
T ss_pred -HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence 33334556788999999999986544333 234444433210 01124999999999976432
Q ss_pred hhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhh-HhhHHhHHHHHHHHHHHHhh
Q 040649 154 EKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE-AKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 154 ~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~s-a~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+-...+.. ...+...++......++....+ +....+...|-.+++.++..
T Consensus 146 ~~~~~~~~~~-----~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (202)
T cd04102 146 ESSGNLVLTA-----RGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIEK 198 (202)
T ss_pred ccchHHHhhH-----hhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHHh
Confidence 1111111111 3445666776666555543221 22223445555555555543
No 194
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.49 E-value=1.3e-12 Score=117.10 Aligned_cols=162 Identities=15% Similarity=0.103 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|.+|+|||||++.+++...+.. .. .|....+ ..+.. ++ ..+.||||||... +...
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~-y~---pTi~~~~~~~~~~-~~~~v~L~iwDt~G~e~-----------~~~l 65 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGS-YV---PTVFENYTASFEI-DKRRIELNMWDTSGSSY-----------YDNV 65 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCc-cC---CccccceEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHH
Confidence 5799999999999999999998765322 11 1111111 12222 33 3688899999432 2333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
...++.++|++|+|+|++++-+-.. ..+...+....+ . .|+++|.||+|+..+. ..+...... -......
T Consensus 66 ~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~-~--~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~ 141 (222)
T cd04173 66 RPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCP-N--AKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGT 141 (222)
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEECcccccch-hhhhhhhhccCCccCHHHHH
Confidence 4456789999999999985433222 223333333322 2 3999999999976431 111111000 0011233
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHH-hHHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTE-QVQQLLSLVNAV 207 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~ 207 (371)
.+....+. .++ ..||+++. +|.++|......
T Consensus 142 ~~ak~~~~~~y~------E~SAk~~~~~V~~~F~~~~~~ 174 (222)
T cd04173 142 VLAKQVGAVSYV------ECSSRSSERSVRDVFHVATVA 174 (222)
T ss_pred HHHHHcCCCEEE------EcCCCcCCcCHHHHHHHHHHH
Confidence 44444442 333 25677666 499999987764
No 195
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.48 E-value=7.7e-13 Score=116.82 Aligned_cols=151 Identities=13% Similarity=0.052 Sum_probs=91.9
Q ss_pred EcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 25 LGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM--KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 25 vG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~--~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
+|.+|+|||||++.+++.... .. ...|..... ..+.+ .....+.||||||... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 699999999999999865432 21 112222222 22222 1235789999999543 233334467
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 102 DGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
.++|++|+|+|++++.+-.. ..++..+..... . .|+++|.||+|+.... ...+ .+ .+....+..+
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~-~--~piilvgNK~Dl~~~~-v~~~---------~~-~~~~~~~~~~ 131 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDVKDRK-VKAK---------SI-TFHRKKNLQY 131 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccccccc-CCHH---------HH-HHHHHcCCEE
Confidence 78899999999985543332 234555555432 3 3999999999964320 1111 01 2222223222
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+ ..||+++.|+.+++..+...+..
T Consensus 132 ~------e~SAk~~~~v~~~F~~l~~~i~~ 155 (200)
T smart00176 132 Y------DISAKSNYNFEKPFLWLARKLIG 155 (200)
T ss_pred E------EEeCCCCCCHHHHHHHHHHHHHh
Confidence 2 36888899999999999866644
No 196
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.48 E-value=7.9e-13 Score=128.84 Aligned_cols=172 Identities=16% Similarity=0.205 Sum_probs=101.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC------ccc------c--CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR------AFK------A--SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~------~~~------~--~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
.++..+|+++|+.++|||||+++|++.. .+. . .....+.|.......+.. ++..+++|||||+.+
T Consensus 9 ~~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~ 87 (394)
T TIGR00485 9 TKPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD 87 (394)
T ss_pred CCceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH
Confidence 4556899999999999999999998531 110 0 001145565554444433 566899999999643
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+ ...+......+|++++|+|++.+....+...+..+... +. .++++|+||+|.... ....+.+
T Consensus 88 -------f----~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~--~~~~~~~ 150 (394)
T TIGR00485 88 -------Y----VKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD--EELLELV 150 (394)
T ss_pred -------H----HHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH--HHHHHHH
Confidence 2 22223334567999999999977777777777766543 32 256678999998754 2222222
Q ss_pred cccCCchHHHHHHhcC-----CceEeecCcchh--hHhhHHhHHHHHHHHHHHHh
Q 040649 162 GLECPKPLKEILQLCD-----NRWVLFDNKTKY--EAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~--sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. ..++.++...+ .++++.++.... ...-..++..|++.+..+++
T Consensus 151 ~----~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~~ 201 (394)
T TIGR00485 151 E----MEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYIP 201 (394)
T ss_pred H----HHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcCC
Confidence 1 12455555443 234443332111 00011246677777776553
No 197
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.48 E-value=1.7e-13 Score=117.51 Aligned_cols=115 Identities=17% Similarity=0.254 Sum_probs=70.8
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccc-eeEE-----------------------------------------
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAIT-KTCE----------------------------------------- 59 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t-~~~~----------------------------------------- 59 (371)
|+|+|..++|||||+|+|+|....+++..+.... +...
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 7899999999999999999998766543321000 0000
Q ss_pred -----------EEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHH
Q 040649 60 -----------MKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRL 128 (371)
Q Consensus 60 -----------~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l 128 (371)
...........+.||||||+.+...... ..+..+...+|++|||+++...++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 0000011223588999999987433222 2222334667999999999977776666555554
Q ss_pred HHHhCCCCCCeEEEEEeCC
Q 040649 129 QTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 129 ~~~~~~~~~~~~ilv~tk~ 147 (371)
..... ..+++|+||+
T Consensus 154 ~~~~~----~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDPDK----SRTIFVLNKA 168 (168)
T ss_dssp HTTTC----SSEEEEEE-G
T ss_pred hcCCC----CeEEEEEcCC
Confidence 43322 3699999985
No 198
>PRK00049 elongation factor Tu; Reviewed
Probab=99.48 E-value=9.3e-13 Score=128.25 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=105.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK--------------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||+++|++..... ......+.|.......+.. ++..++++||||+.+
T Consensus 9 ~~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~ 87 (396)
T PRK00049 9 TKPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD 87 (396)
T ss_pred CCCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH
Confidence 3456899999999999999999999732100 0001235555554444443 567899999999632
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEE-EEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMI-VVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~i-lv~tk~D~~~~~~~~l~~~ 160 (371)
+...+......+|++++|+|+..+....+...+..+... + .|.+ +++||+|.... ....+.
T Consensus 88 -----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~-g----~p~iiVvvNK~D~~~~--~~~~~~ 149 (396)
T PRK00049 88 -----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD--EELLEL 149 (396)
T ss_pred -----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHc-C----CCEEEEEEeecCCcch--HHHHHH
Confidence 333444456688999999999877888777777776653 3 2654 68999998743 222222
Q ss_pred hcccCCchHHHHHHhcC-----CceEeecCcchh----hHhhHHhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCD-----NRWVLFDNKTKY----EAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~----sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+. ..+..++..++ .++++.+..... +..-..++..|++.+..+++
T Consensus 150 ~~----~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 150 VE----MEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred HH----HHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 22 12555665543 233443332110 00011257788888887654
No 199
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.48 E-value=7.2e-13 Score=133.96 Aligned_cols=114 Identities=19% Similarity=0.217 Sum_probs=75.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~~ 82 (371)
+.|+++|++++|||||+|+|++...... .+++.|.......+... ....+.||||||....
T Consensus 5 piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f 82 (590)
T TIGR00491 5 PIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAF 82 (590)
T ss_pred CEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhH
Confidence 5799999999999999999998865321 12223321111111110 0124889999996432
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
.......+..+|++++|+|+++++...+...+..+... . .|+++|+||+|...
T Consensus 83 -----------~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 83 -----------TNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence 22223345678999999999977777777666666532 2 39999999999863
No 200
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.48 E-value=6e-13 Score=113.11 Aligned_cols=157 Identities=19% Similarity=0.207 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+.+...........+ .......... ++. .+.++||||... +.....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~~~ 66 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVSI-DGKPVNLEIWDTSGQER-----------FDSLRD 66 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEEE-TTEEEEEEEEEETTSGG-----------GHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccc--cccccccccc-ccccccccccccccccc-----------cccccc
Confidence 589999999999999999997764332211111 1222222333 333 689999999532 111223
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|.+++-+-.. ..++..+....+.. .|+++|.||.|......-+.+ ..+.+....+
T Consensus 67 ~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~---------~~~~~~~~~~ 135 (162)
T PF00071_consen 67 IFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVE---------EAQEFAKELG 135 (162)
T ss_dssp HHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHH---------HHHHHHHHTT
T ss_pred cccccccccccccccccccccccccccccccccccccc--ccceeeeccccccccccchhh---------HHHHHHHHhC
Confidence 44667899999999984322221 34555566655533 399999999997642111211 2445566555
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..++. .|++++.++.+++..+.+.+
T Consensus 136 ~~~~e------~Sa~~~~~v~~~f~~~i~~i 160 (162)
T PF00071_consen 136 VPYFE------VSAKNGENVKEIFQELIRKI 160 (162)
T ss_dssp SEEEE------EBTTTTTTHHHHHHHHHHHH
T ss_pred CEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 44444 46667789999888776543
No 201
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.47 E-value=5.1e-13 Score=123.60 Aligned_cols=115 Identities=22% Similarity=0.264 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc--cCCCC--------------CccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK--ASAGS--------------SAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~--~~~~~--------------~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+|+++|++|+|||||+|+|++..... .+... .+.|.......+.+ .+..+++|||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 48999999999999999997532110 00000 12222233334445 678899999999754
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...... .++..+|++++|+|++.+........+..+... + .|.++|+||+|....
T Consensus 77 ----f~~~~~----~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-~----~p~iivvNK~D~~~~ 131 (268)
T cd04170 77 ----FVGETR----AALRAADAALVVVSAQSGVEVGTEKLWEFADEA-G----IPRIIFINKMDRERA 131 (268)
T ss_pred ----HHHHHH----HHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCccCCC
Confidence 122222 334456999999999876666555555555432 2 389999999997754
No 202
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.47 E-value=5.8e-13 Score=135.43 Aligned_cols=154 Identities=16% Similarity=0.162 Sum_probs=97.2
Q ss_pred cCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCce
Q 040649 26 GRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIH 105 (371)
Q Consensus 26 G~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d 105 (371)
|.+|+|||||+|+++|.... . ...+++|.........+ ++..+.++||||..+...... .+.+... ......+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~~-v-~n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~-~l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQT-V-GNWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARD-YLLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCCe-e-cCCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHH-HHhhcCCC
Confidence 89999999999999998752 2 23455666555555555 677899999999886533211 1112211 11235789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecC
Q 040649 106 AVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185 (371)
Q Consensus 106 ~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~ 185 (371)
++++|+|+++ +... ......+.+ .. .|+++|+||+|..+..+... ..+.+....+.++++
T Consensus 75 vvI~VvDat~-ler~-l~l~~ql~~---~~--~PiIIVlNK~Dl~~~~~i~~----------d~~~L~~~lg~pvv~--- 134 (591)
T TIGR00437 75 LVVNVVDASN-LERN-LYLTLQLLE---LG--IPMILALNLVDEAEKKGIRI----------DEEKLEERLGVPVVP--- 134 (591)
T ss_pred EEEEEecCCc-chhh-HHHHHHHHh---cC--CCEEEEEehhHHHHhCCChh----------hHHHHHHHcCCCEEE---
Confidence 9999999983 3322 222222222 22 49999999999754311111 123444444555554
Q ss_pred cchhhHhhHHhHHHHHHHHHHHH
Q 040649 186 KTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 186 ~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.||+++.|+++|++.+.+..
T Consensus 135 ---tSA~tg~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 ---TSATEGRGIERLKDAIRKAI 154 (591)
T ss_pred ---EECCCCCCHHHHHHHHHHHh
Confidence 57778899999999988664
No 203
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.47 E-value=1e-12 Score=128.42 Aligned_cols=168 Identities=13% Similarity=0.144 Sum_probs=100.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEe------------------e-------CC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVL------------------K-------DG 68 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~------------------~-------~~ 68 (371)
..++..+|+++|+.|+|||||+.+|+|....... ....+.|....+....+ . ..
T Consensus 5 ~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (411)
T PRK04000 5 KVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELL 84 (411)
T ss_pred cCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccc
Confidence 4556699999999999999999999875211110 01123333322211110 0 02
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
..++|+||||.. .+...+ ......+|++++|+|++.+. .......+..+.. .+. .|+++|+||+
T Consensus 85 ~~i~liDtPG~~-------~f~~~~----~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~-~~i---~~iiVVlNK~ 149 (411)
T PRK04000 85 RRVSFVDAPGHE-------TLMATM----LSGAALMDGAILVIAANEPCPQPQTKEHLMALDI-IGI---KNIVIVQNKI 149 (411)
T ss_pred cEEEEEECCCHH-------HHHHHH----HHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEEee
Confidence 578999999943 222222 23344669999999999665 4555555555543 332 3789999999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|.... ......... +..++... +.++ ...|++++.|++.|++.+...++.
T Consensus 150 Dl~~~--~~~~~~~~~-----i~~~l~~~~~~~~~i------i~vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 150 DLVSK--ERALENYEQ-----IKEFVKGTVAENAPI------IPVSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred ccccc--hhHHHHHHH-----HHHHhccccCCCCeE------EEEECCCCcCHHHHHHHHHHhCCC
Confidence 98754 222211111 23333211 1122 336888899999999999986653
No 204
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.47 E-value=3e-13 Score=121.33 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=89.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC---Cccc--------------------------cCCCCCccceeEEEEeEEeeCCcEE
Q 040649 21 TVVLLGRTGNGKSATGNSILGR---RAFK--------------------------ASAGSSAITKTCEMKTTVLKDGQVV 71 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~---~~~~--------------------------~~~~~~~~t~~~~~~~~~~~~~~~i 71 (371)
+|+++|+.|+|||||+.+|+.. .... ......++|.......+.+ .+..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 4899999999999999998522 1100 0001135555555556666 78899
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
++|||||+.+ ....+. .....+|++|+|+|+..+ ........+..+. .++. +|+++|+
T Consensus 80 ~liDtpG~~~-------~~~~~~----~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-------FVPNMI----TGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLAR-TLGV---KQLIVAV 144 (219)
T ss_pred EEEECCChHH-------HHHHHH----HHhhhCCEEEEEEECCCCccccccccccchHHHHHHHH-HcCC---CeEEEEE
Confidence 9999999643 222222 334567999999999853 2223333333332 2332 3899999
Q ss_pred eCCCCCCC--chhhHHHHhcccCCchHHHHHHhcCC-----ceEeecCcchhhHhhHHhHH
Q 040649 145 TGGDDLED--NEKTLEDYLGLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 145 tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~~~i~ 198 (371)
||+|.... ....+...... +..++...+. ++++ .||.++.|+.
T Consensus 145 NK~Dl~~~~~~~~~~~~i~~~-----l~~~l~~~~~~~~~~~ii~------iSA~tg~gi~ 194 (219)
T cd01883 145 NKMDDVTVNWSEERYDEIKKE-----LSPFLKKVGYNPKDVPFIP------ISGLTGDNLI 194 (219)
T ss_pred EccccccccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecCcCCCCC
Confidence 99998742 12334444433 4555554432 2333 5666677655
No 205
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.47 E-value=2.9e-12 Score=114.57 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=92.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHH-HhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNS-ILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~-L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+++|++|||||||++. +.|... .....+.+. ......+.. .....+.++||||.... .
T Consensus 7 ~~~~kv~liG~~g~GKTtLi~~~~~~~~~-~~~~~t~~~--~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----------~ 72 (215)
T PTZ00132 7 VPEFKLILVGDGGVGKTTFVKRHLTGEFE-KKYIPTLGV--EVHPLKFYTNCGPICFNVWDTAGQEKF-----------G 72 (215)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHhCCCC-CCCCCccce--EEEEEEEEECCeEEEEEEEECCCchhh-----------h
Confidence 3457999999999999999975 454422 111111111 111111211 12347889999995321 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+...+++++|+|++++.+-.. ..++..+..... . .|+++|+||+|..... .... ...+.
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~~i~lv~nK~Dl~~~~-~~~~----------~~~~~ 138 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCE-N--IPIVLVGNKVDVKDRQ-VKAR----------QITFH 138 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccCcccc-CCHH----------HHHHH
Confidence 112233456799999999985443322 233344443332 2 3899999999965321 1111 11233
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
...+..++ ..|++++.++++++..+...+.....
T Consensus 139 ~~~~~~~~------e~Sa~~~~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 139 RKKNLQYY------DISAKSNYNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHhhccc
Confidence 33333333 35777889999999988877666544
No 206
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.47 E-value=1.1e-12 Score=133.51 Aligned_cols=163 Identities=20% Similarity=0.198 Sum_probs=100.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc------cccCC-------CCCccceeEEEEeEEee--CC--cEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA------FKASA-------GSSAITKTCEMKTTVLK--DG--QVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~------~~~~~-------~~~~~t~~~~~~~~~~~--~~--~~i~liDTPG~~~ 81 (371)
..+|+++|+.|+|||||++.|+.... +.... ...++|.......+.+. ++ ..++||||||..+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 46899999999999999999985421 11100 01245544444334332 22 5789999999765
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+ ...+ ..++..+|++|+|+|++++.+......+..+.. .. .|+++|+||+|..... .+...
T Consensus 83 F-------~~~v----~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~~---~~~~~ 143 (595)
T TIGR01393 83 F-------SYEV----SRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSAD---PERVK 143 (595)
T ss_pred H-------HHHH----HHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCccC---HHHHH
Confidence 2 2222 334556799999999997776665544433332 12 3899999999975431 11111
Q ss_pred cccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 162 GLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. +...+ +.. +......||+++.|+.+|++.+.+.++..
T Consensus 144 ~e-----l~~~l---g~~---~~~vi~vSAktG~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 144 KE-----IEEVI---GLD---ASEAILASAKTGIGIEEILEAIVKRVPPP 182 (595)
T ss_pred HH-----HHHHh---CCC---cceEEEeeccCCCCHHHHHHHHHHhCCCC
Confidence 11 22222 211 01123468899999999999998877653
No 207
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.46 E-value=1.2e-12 Score=127.87 Aligned_cols=164 Identities=14% Similarity=0.169 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEE--------------e-----------eCCcEE
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTV--------------L-----------KDGQVV 71 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~--------------~-----------~~~~~i 71 (371)
+..+|+++|+.++|||||+++|+|....... ....+.|....+.... . ..+..+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 4589999999999999999999875321110 0011222221111000 0 014679
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
+++||||..+ +...+.. ....+|++++|+|++.+. .......+..+. .++. +|+++|+||+|..
T Consensus 83 ~liDtPGh~~-------f~~~~~~----g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~-~~gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-------LMATMLS----GAALMDGALLVIAANEPCPQPQTKEHLMALE-IIGI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-------HHHHHHH----HHHHCCEEEEEEECCCCccccchHHHHHHHH-HcCC---CeEEEEEEccccC
Confidence 9999999532 3333333 334569999999999665 444455555443 3332 3799999999987
Q ss_pred CCchhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 151 EDNEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 151 ~~~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.. ......... +..++... +..+ .+.|+.++.++..|++.+...++
T Consensus 148 ~~--~~~~~~~~~-----i~~~l~~~~~~~~~i------i~vSA~~g~gi~~L~e~L~~~l~ 196 (406)
T TIGR03680 148 SK--EKALENYEE-----IKEFVKGTVAENAPI------IPVSALHNANIDALLEAIEKFIP 196 (406)
T ss_pred CH--HHHHHHHHH-----HHhhhhhcccCCCeE------EEEECCCCCChHHHHHHHHHhCC
Confidence 54 222211111 22233211 1122 23678888999999999998665
No 208
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.46 E-value=8.1e-13 Score=115.51 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=92.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+|+|++|+|||||++.+++...... . ..|....+ ....+ ++ ..+.++||||...... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~-----------~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEE-Y---HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER-----------L 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcc-c---CCcccceEEEEEEE-CCEEEEEEEEECCCChhccc-----------c
Confidence 4799999999999999999985544222 1 11211111 12222 33 3578999999643211 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc--CCchHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE--CPKPLKEI 172 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~--~~~~l~~~ 172 (371)
....+..+|++++|++++++-+-.. ..++..+....+. .|+++|.||+|..... ...+.+.... .......+
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~ 141 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDA-VAKEEYRTQRFVPIQQGKRV 141 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCc-ccccccccCCcCCHHHHHHH
Confidence 1123467799999999974332222 2355555554432 4999999999975321 1111100000 00112233
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
....+. .++ ..||+++.|++++++.+...+
T Consensus 142 ~~~~~~~~~~------e~Sa~~~~~v~~~f~~l~~~~ 172 (187)
T cd04129 142 AKEIGAKKYM------ECSALTGEGVDDVFEAATRAA 172 (187)
T ss_pred HHHhCCcEEE------EccCCCCCCHHHHHHHHHHHH
Confidence 333332 222 368889999999999988544
No 209
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.46 E-value=7.4e-13 Score=130.46 Aligned_cols=162 Identities=17% Similarity=0.151 Sum_probs=95.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC---CCccc-----------cC---------------CCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILG---RRAFK-----------AS---------------AGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~-----------~~---------------~~~~~~t~~~~~~~~~~~ 66 (371)
..+..+|+++|+.++|||||++.|+. ..... .+ ....+.|.......+.+
T Consensus 4 ~~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~- 82 (426)
T TIGR00483 4 EKEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET- 82 (426)
T ss_pred CCceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-
Confidence 44568999999999999999999984 21100 00 01135566666655555
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC---CCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR---FSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~---~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
++..+.||||||..+ +...+...+..+|++++|+|++.+ ........+..+ ..++. .|+++|
T Consensus 83 ~~~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~-~~~~~---~~iIVv 147 (426)
T TIGR00483 83 DKYEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLA-RTLGI---NQLIVA 147 (426)
T ss_pred CCeEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHH-HHcCC---CeEEEE
Confidence 677899999999432 222233345678999999999865 222222222222 33342 389999
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
+||+|........++..... ++.++...+.... .....+.||+++.++.+
T Consensus 148 iNK~Dl~~~~~~~~~~~~~e-----i~~~~~~~g~~~~-~~~~i~iSA~~g~ni~~ 197 (426)
T TIGR00483 148 INKMDSVNYDEEEFEAIKKE-----VSNLIKKVGYNPD-TVPFIPISAWNGDNVIK 197 (426)
T ss_pred EEChhccCccHHHHHHHHHH-----HHHHHHHcCCCcc-cceEEEeeccccccccc
Confidence 99999874322333333332 5556655442100 00112357777777765
No 210
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.45 E-value=6.4e-13 Score=129.80 Aligned_cols=117 Identities=15% Similarity=0.146 Sum_probs=79.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCC-----------------CCCccceeEEEEeEEeeCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFK--------------ASA-----------------GSSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~-----------------~~~~~t~~~~~~~~~~~~~ 68 (371)
.+|+++|+.++|||||++.|+...-.. .+. ...+.|.......+.+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 379999999999999999986332110 000 0124556665555555 67
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..++||||||+.+ +...+ ......+|++++|+|+..++...+...+..+.. ++. .++++|+||+|
T Consensus 80 ~~~~liDtPGh~~-------f~~~~----~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~-~~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-------YTRNM----ATGASTADLAVLLVDARKGVLEQTRRHSYIASL-LGI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-------HHHHH----HHHHhhCCEEEEEEECCCCCccccHHHHHHHHH-cCC---CcEEEEEEecc
Confidence 7899999999543 22222 234557799999999987777666655555543 342 37899999999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 145 ~~~~ 148 (406)
T TIGR02034 145 LVDY 148 (406)
T ss_pred cccc
Confidence 8754
No 211
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.45 E-value=2.4e-12 Score=116.01 Aligned_cols=127 Identities=16% Similarity=0.184 Sum_probs=79.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee-----------------------------------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT----------------------------------------- 57 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~----------------------------------------- 57 (371)
-+.|+|+|++|+||||++++|+|...++.+.+. +|..
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~--~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 103 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI--VTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRV 103 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCccccCCCc--ccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHh
Confidence 357999999999999999999998643322110 1100
Q ss_pred ----------EEEEeEEeeCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCC-ceEEEEEEeCCCCCCHHH-HH
Q 040649 58 ----------CEMKTTVLKDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDG-IHAVLLVFSVRSRFSQEE-EA 123 (371)
Q Consensus 58 ----------~~~~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~-~d~vl~v~d~~~~~~~~~-~~ 123 (371)
.-...+..++...++||||||+..... ........+...+..+... .+.+|+|+|++..+...+ ..
T Consensus 104 ~~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ 183 (240)
T smart00053 104 TGTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALK 183 (240)
T ss_pred cCCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHH
Confidence 000001111235789999999975421 1133444555555555553 458999999986677665 45
Q ss_pred HHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 124 AVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 124 ~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+.+... ..++++|+||+|....
T Consensus 184 ia~~ld~~-----~~rti~ViTK~D~~~~ 207 (240)
T smart00053 184 LAKEVDPQ-----GERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHHc-----CCcEEEEEECCCCCCc
Confidence 55555432 2499999999998855
No 212
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.45 E-value=5.4e-13 Score=119.19 Aligned_cols=114 Identities=19% Similarity=0.213 Sum_probs=71.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccC-----C------------CCCccceeEEEEeEEee----CCcEEEEEeCCCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKAS-----A------------GSSAITKTCEMKTTVLK----DGQVVNVIDTPGL 79 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~-----~------------~~~~~t~~~~~~~~~~~----~~~~i~liDTPG~ 79 (371)
+|+++|++|+|||||++.|++....... . ...+.|.......+.+. ....+++|||||.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~ 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence 6899999999999999999864432110 0 00122222222222221 2357899999997
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.+. ......++..+|++++|+|+....+......+..+.. .. .|+++|+||+|.+
T Consensus 82 ~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 82 VNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred cch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 653 1112233446699999999986666555444444332 12 4999999999976
No 213
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.44 E-value=2e-12 Score=118.78 Aligned_cols=170 Identities=19% Similarity=0.191 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
-|++||-|++|||||++.++.... ....++.+|..+..-.+....+..+++-|.||+........-+...+.+.+..+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP--KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP--KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT 238 (369)
T ss_pred ccccccCCCCcHHHHHHHHhhcCC--cccCCccccccCcccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh
Confidence 468999999999999999997665 334455566555554444446678999999999976555555667777777766
Q ss_pred cCCceEEEEEEeCCCCCC----HHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 101 KDGIHAVLLVFSVRSRFS----QEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~----~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.++++|+|++ +.. ..+... ...|..+-..-..+|.++|+||+|...+. +.++.+. +.+...
T Consensus 239 ----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~-e~~~~~~--------~~l~~~ 304 (369)
T COG0536 239 ----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDE-EELEELK--------KALAEA 304 (369)
T ss_pred ----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCH-HHHHHHH--------HHHHHh
Confidence 7999999998 222 233333 33344332223446999999999965441 3333222 223333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
++...+++ .|+.++.+++.|+..+..++...
T Consensus 305 ~~~~~~~~-----ISa~t~~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 305 LGWEVFYL-----ISALTREGLDELLRALAELLEET 335 (369)
T ss_pred cCCCccee-----eehhcccCHHHHHHHHHHHHHHh
Confidence 34333332 67888899999999998888765
No 214
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.44 E-value=2e-12 Score=109.91 Aligned_cols=151 Identities=19% Similarity=0.174 Sum_probs=88.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+++|.+|+|||||++.+++...... ..+.... . ...+.+ ++ ..+.++||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~~~~~--~-~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESPEGGR--F-KKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCCCccc--e-EEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 699999999999999998776543221 1111111 1 122333 44 35889999996420
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..+..+|++++|+|++++-+-.. ..++..+....+. ...|+++|.||.|........+... ....+....+
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~-~~~piilvgnK~Dl~~~~~~~v~~~-------~~~~~~~~~~ 132 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNI-SEIPLILVGTQDAISESNPRVIDDA-------RARQLCADMK 132 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeeHHHhhhcCCcccCHH-------HHHHHHHHhC
Confidence 12346799999999996544333 3455555544321 1249999999998642111111110 1122333222
Q ss_pred -CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 178 -NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 178 -~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..++ ..||+++.||++++..+.+
T Consensus 133 ~~~~~------e~SAk~~~~i~~~f~~~~~ 156 (158)
T cd04103 133 RCSYY------ETCATYGLNVERVFQEAAQ 156 (158)
T ss_pred CCcEE------EEecCCCCCHHHHHHHHHh
Confidence 2222 3688899999999988753
No 215
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.44 E-value=7.7e-13 Score=136.34 Aligned_cols=160 Identities=11% Similarity=0.093 Sum_probs=96.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------CC-----------------CCCccceeEEEEeE
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------SA-----------------GSSAITKTCEMKTT 63 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~~-----------------~~~~~t~~~~~~~~ 63 (371)
+..+..+|+++|++++|||||+|.|+...-... +. ...+.|.......+
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 445668999999999999999999986432111 00 00244544544455
Q ss_pred EeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 64 VLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 64 ~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
.+ ++..++||||||+.+ +...+ ......+|++++|+|+..++...+...+..+.. ++. +++++|
T Consensus 100 ~~-~~~~~~liDtPG~~~-------f~~~~----~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~-~~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-------YTRNM----VTGASTADLAIILVDARKGVLTQTRRHSFIASL-LGI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-------HHHHH----HHHHHhCCEEEEEEECCCCccccCHHHHHHHHH-hCC---CeEEEE
Confidence 55 677899999999532 22222 223457799999999987776655555555443 332 389999
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~ 198 (371)
+||+|....+...++..... +..++...+... ....+.|+.++.|+.
T Consensus 164 vNK~D~~~~~~~~~~~i~~~-----i~~~~~~~~~~~---~~iipiSA~~g~ni~ 210 (632)
T PRK05506 164 VNKMDLVDYDQEVFDEIVAD-----YRAFAAKLGLHD---VTFIPISALKGDNVV 210 (632)
T ss_pred EEecccccchhHHHHHHHHH-----HHHHHHHcCCCC---ccEEEEecccCCCcc
Confidence 99999875322333333332 444444333210 011235666667665
No 216
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.44 E-value=1.4e-12 Score=132.78 Aligned_cols=164 Identities=18% Similarity=0.179 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-ccc---CC---------CCCccceeEEEEeEEee----CCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKA---SA---------GSSAITKTCEMKTTVLK----DGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~---~~---------~~~~~t~~~~~~~~~~~----~~~~i~liDTPG~~ 80 (371)
...+|+++|+.++|||||+..|+...- ... .. ...+.|.......+.|. .+..+++|||||+.
T Consensus 6 ~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~ 85 (600)
T PRK05433 6 NIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHV 85 (600)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcH
Confidence 457999999999999999999975321 000 00 01244444433333331 24578999999976
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~ 160 (371)
++ ..++. .++..+|++|+|+|++.+....+...+..+.. .. .|+++|+||+|..... ....
T Consensus 86 dF-------~~~v~----~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a~---~~~v 146 (600)
T PRK05433 86 DF-------SYEVS----RSLAACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAAD---PERV 146 (600)
T ss_pred HH-------HHHHH----HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCccc---HHHH
Confidence 53 22232 33446699999999987776665544444332 12 3899999999975431 1111
Q ss_pred hcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 161 LGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
... +...+ +... ......||+++.|+.+|++.|...++..
T Consensus 147 ~~e-----i~~~l---g~~~---~~vi~iSAktG~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 147 KQE-----IEDVI---GIDA---SDAVLVSAKTGIGIEEVLEAIVERIPPP 186 (600)
T ss_pred HHH-----HHHHh---CCCc---ceEEEEecCCCCCHHHHHHHHHHhCccc
Confidence 111 22222 2110 0123468889999999999998877753
No 217
>PRK10218 GTP-binding protein; Provisional
Probab=99.44 E-value=3.7e-12 Score=129.26 Aligned_cols=117 Identities=20% Similarity=0.249 Sum_probs=81.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC-ccccC-------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR-AFKAS-------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+|+++|+.|+|||||+++|++.. .+... ....++|.......+.+ ++..+++|||||..++.
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df~- 82 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADFG- 82 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchhH-
Confidence 4789999999999999999999632 11111 11234555555555556 78899999999987631
Q ss_pred chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 85 ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 85 ~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.. +..++..+|++|+|+|+..+........+..+... + .|.++|+||+|....
T Consensus 83 ------~~----v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~-g----ip~IVviNKiD~~~a 135 (607)
T PRK10218 83 ------GE----VERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY-G----LKPIVVINKVDRPGA 135 (607)
T ss_pred ------HH----HHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc-C----CCEEEEEECcCCCCC
Confidence 12 23344567999999999876666666666655442 2 388999999997644
No 218
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=1.5e-10 Score=103.24 Aligned_cols=163 Identities=17% Similarity=0.196 Sum_probs=99.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC---cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+|+.||.+|.|||||+++|++...-....+..-.+.......+.+..+ ..++|+||.||+|.-...+ ..+.|+.
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~-Syk~iVd 120 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKED-SYKPIVD 120 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccc-ccchHHH
Confidence 46899999999999999999997764222111111122222222222122 3789999999998632211 1111222
Q ss_pred HH------------------hh-hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchh
Q 040649 96 CI------------------GM-AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEK 155 (371)
Q Consensus 96 ~~------------------~~-~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~ 155 (371)
++ .. ....+|++||.+..+ +++...+.-.++.|... .++|.|+.|.|.... .
T Consensus 121 yidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ldsk------VNIIPvIAKaDtisK--~ 192 (406)
T KOG3859|consen 121 YIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSK------VNIIPVIAKADTISK--E 192 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHhhh------hhhHHHHHHhhhhhH--H
Confidence 21 11 124789999999766 66777776666666543 288999999997766 6
Q ss_pred hHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHH
Q 040649 156 TLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTE 195 (371)
Q Consensus 156 ~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~ 195 (371)
.+..|... +..-+...|..++.|+......+....
T Consensus 193 eL~~FK~k-----imsEL~sngv~IYqfPtDdetva~~N~ 227 (406)
T KOG3859|consen 193 ELKRFKIK-----IMSELVSNGVQIYQFPTDDETVAKANS 227 (406)
T ss_pred HHHHHHHH-----HHHHHHhcCceeeeccchHHHHHHHHH
Confidence 66666554 444444556778888776555444333
No 219
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.42 E-value=3.4e-12 Score=129.52 Aligned_cols=114 Identities=20% Similarity=0.216 Sum_probs=73.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~ 81 (371)
.+.|+++|++|+|||||+|+|.|..... ..+++.|........... .-..+++|||||..+
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v~~--~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~ 83 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAVAA--KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEA 83 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccc--CCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHH
Confidence 3589999999999999999999876422 122222222111111000 001278999999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
+ ..........+|++++|+|++.++.......+..+... . .|+++++||+|..
T Consensus 84 f-----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~---~--vpiIvviNK~D~~ 136 (586)
T PRK04004 84 F-----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR---K--TPFVVAANKIDRI 136 (586)
T ss_pred H-----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcCCc
Confidence 2 11122334567999999999977777777776665542 2 3899999999975
No 220
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.41 E-value=9.6e-13 Score=125.60 Aligned_cols=134 Identities=21% Similarity=0.256 Sum_probs=90.8
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHH
Q 040649 11 KPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 11 ~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
.+++.+.+..+++|+|.|++|||||+|.++..++- +.+...|+..-+.......-..+.+|||||+.|....+..+.
T Consensus 160 rlPsIDp~trTlllcG~PNVGKSSf~~~vtradve---vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~I 236 (620)
T KOG1490|consen 160 RLPAIDPNTRTLLVCGYPNVGKSSFNNKVTRADDE---VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNII 236 (620)
T ss_pred cCCCCCCCcCeEEEecCCCCCcHhhcccccccccc---cCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHH
Confidence 36777888899999999999999999999876652 222333433333322222445788999999998644332222
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCC--CCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVR--SRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~--~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+ +.....+ ..-..+|||++|++ ++++-. ...++..++.+|.++ |+|+|+||+|.+..
T Consensus 237 E-mqsITAL-AHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK---~~IlvlNK~D~m~~ 296 (620)
T KOG1490|consen 237 E-MQIITAL-AHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANK---VTILVLNKIDAMRP 296 (620)
T ss_pred H-HHHHHHH-HHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCC---ceEEEeecccccCc
Confidence 1 1111111 12225899999998 456644 466788899998875 99999999999877
No 221
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.4e-12 Score=124.58 Aligned_cols=178 Identities=14% Similarity=0.088 Sum_probs=108.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-CccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-SAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..++.|+++|+|++|||||+|+|+..+. +.+++ +++|.+..-..+.+ +|.+++++||.|+-..+. +.+...-..
T Consensus 266 q~gl~iaIvGrPNvGKSSLlNaL~~~dr--sIVSpv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe~~~--~~iE~~gI~ 340 (531)
T KOG1191|consen 266 QSGLQIAIVGRPNVGKSSLLNALSREDR--SIVSPVPGTTRDAIEAQVTV-NGVPVRLSDTAGIREESN--DGIEALGIE 340 (531)
T ss_pred hcCCeEEEEcCCCCCHHHHHHHHhcCCc--eEeCCCCCcchhhheeEeec-CCeEEEEEeccccccccC--ChhHHHhHH
Confidence 3568999999999999999999998887 44444 34455555555665 999999999999987221 122222233
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh-CCC------CCCeEEEEEeCCCCCCCchhhHHHHhcccCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF-GKK------IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~-~~~------~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~ 168 (371)
........+|++++|+|+....+..+....+.+...- |-. ...+++++.||.|...+- ..+.. ....+
T Consensus 341 rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~----~~~~~-~~~~~ 415 (531)
T KOG1191|consen 341 RARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI----PEMTK-IPVVY 415 (531)
T ss_pred HHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc----ccccC-Cceec
Confidence 3344556779999999996445555555444444321 111 125899999999987551 00000 00001
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
... ......+++ ...++.+++++..|...+.+.+..
T Consensus 416 ~~~-~~~~~~~i~-----~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 416 PSA-EGRSVFPIV-----VEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred ccc-ccCcccceE-----EEeeechhhhHHHHHHHHHHHHHH
Confidence 111 000011122 225667889999999988765554
No 222
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.40 E-value=4.1e-12 Score=112.61 Aligned_cols=116 Identities=16% Similarity=0.176 Sum_probs=69.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe---eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL---KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
++|+++|++|||||||++.|.+........+ +......... ..+..+.||||||... ....+
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-----~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-------~~~~~--- 65 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-----IEPNVATFILNSEGKGKKFRLVDVPGHPK-------LRDKL--- 65 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-----EeecceEEEeecCCCCceEEEEECCCCHH-------HHHHH---
Confidence 3699999999999999999998754332111 1111111111 1356799999999653 22222
Q ss_pred HhhhcCCc-eEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGI-HAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~-d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~ 152 (371)
...+... +++|||+|+.... ........++..++. .....|+++|.||+|....
T Consensus 66 -~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 -LETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred -HHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 2234444 9999999998432 222222333322211 1112499999999998754
No 223
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.2e-11 Score=104.70 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=106.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|..|+||||||+..+-... +.... ..+..++....+.+ .++ .+.+|||.|- +.+...
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~f-d~~Yq-ATIGiDFlskt~~l-~d~~vrLQlWDTAGQ-----------ERFrsl 87 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKF-DNTYQ-ATIGIDFLSKTMYL-EDRTVRLQLWDTAGQ-----------ERFRSL 87 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhh-ccccc-ceeeeEEEEEEEEE-cCcEEEEEEEecccH-----------HHHhhh
Confidence 37899999999999999999985443 22111 11222333333433 343 7889999992 336666
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
+..++.++.++|+|+|++++-+-+ ...+++.+..--|... ..+++|.||.|+.+...-+.++- ......
T Consensus 88 ipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eEg---------~~kAke 157 (221)
T KOG0094|consen 88 IPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEEG---------ERKAKE 157 (221)
T ss_pred hhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHHH---------HHHHHH
Confidence 777888999999999998554433 2445566655545431 36889999999886632222221 123333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+.-++ .+||+.+.+|..|+..|...++..
T Consensus 158 l~a~f~------etsak~g~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094|consen 158 LNAEFI------ETSAKAGENVKQLFRRIAAALPGM 187 (221)
T ss_pred hCcEEE------EecccCCCCHHHHHHHHHHhccCc
Confidence 344333 368889999999999988777653
No 224
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=9.2e-12 Score=107.15 Aligned_cols=161 Identities=15% Similarity=0.134 Sum_probs=109.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||+++-++.....-.+..++. ..+.....+.. ++. .+.+|||.|-. .+..
T Consensus 11 ~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi--GIDFk~kti~l-~g~~i~lQiWDtaGQe-----------rf~t 76 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI--GIDFKIKTIEL-DGKKIKLQIWDTAGQE-----------RFRT 76 (207)
T ss_pred eEEEEEEECCCCCchhHhhhhhhhccCcCCccceE--EEEEEEEEEEe-CCeEEEEEEEEcccch-----------hHHH
Confidence 45799999999999999999988655433322222 23344444555 443 68899999933 2344
Q ss_pred HHhhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....++.+++++++|+|+++.-+ .....+++.+.+.-...+ |+++|.||+|+.... .+ ....-+.+..
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v--~~~LvGNK~D~~~~R--~V-------~~e~ge~lA~ 145 (207)
T KOG0078|consen 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDV--VKILVGNKCDLEEKR--QV-------SKERGEALAR 145 (207)
T ss_pred HHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCC--cEEEeeccccccccc--cc-------cHHHHHHHHH
Confidence 45556778899999999984322 233558888888766555 999999999976531 11 1223456777
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..|.+++. +||+.+.+|.+.+-.+..-+.
T Consensus 146 e~G~~F~E------tSAk~~~NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 146 EYGIKFFE------TSAKTNFNIEEAFLSLARDIL 174 (207)
T ss_pred HhCCeEEE------ccccCCCCHHHHHHHHHHHHH
Confidence 77777665 688888999988887775554
No 225
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=1.2e-11 Score=108.85 Aligned_cols=165 Identities=14% Similarity=0.041 Sum_probs=92.7
Q ss_pred eEEEEEcCCCCcHHHHHH-HHhCCCccccC-CCCCcccee--EEEEe---------EEe-eCCcEEEEEeCCCCCCCCcc
Q 040649 20 RTVVLLGRTGNGKSATGN-SILGRRAFKAS-AGSSAITKT--CEMKT---------TVL-KDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin-~L~g~~~~~~~-~~~~~~t~~--~~~~~---------~~~-~~~~~i~liDTPG~~~~~~~ 85 (371)
.+|+++|.+|+|||||+. .+.+....... ......|.. ..+.. ... .....+.||||||....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 689999999999999996 55543321110 001111221 00100 012 12347889999996421
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH---
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY--- 160 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~--- 160 (371)
+ ...++.++|++|+|+|++++.+-... .++..+....+ . .|+++|.||+|+...........
T Consensus 80 -------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~~~~~~~~~~~ 146 (195)
T cd01873 80 -------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCP-R--VPVILVGCKLDLRYADLDEVNRARRP 146 (195)
T ss_pred -------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhccccccchhhhcccc
Confidence 1 12357789999999999865444332 35555655432 3 39999999999753210000000
Q ss_pred -------hcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 161 -------LGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 161 -------l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
-........+.+....+.+++ ..||+++.|++++++.+.+
T Consensus 147 ~~~~~~~~~~V~~~e~~~~a~~~~~~~~------E~SAkt~~~V~e~F~~~~~ 193 (195)
T cd01873 147 LARPIKNADILPPETGRAVAKELGIPYY------ETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred cccccccCCccCHHHHHHHHHHhCCEEE------EcCCCCCCCHHHHHHHHHH
Confidence 000011223445555554333 3688899999999988764
No 226
>PLN03126 Elongation factor Tu; Provisional
Probab=99.40 E-value=8.2e-12 Score=123.66 Aligned_cols=139 Identities=16% Similarity=0.201 Sum_probs=90.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccc--------------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFK--------------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|+.++|||||++.|++..... ......+.|.......+.+ ++..+++|||||+.+
T Consensus 78 ~k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~ 156 (478)
T PLN03126 78 KKPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD 156 (478)
T ss_pred cCCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH
Confidence 4567899999999999999999998532100 0111234555554444555 677899999999543
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
....+ ......+|++++|+|+..+........+..+... |. .++++++||+|.... ....+.+
T Consensus 157 -------f~~~~----~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~--~~~~~~i 219 (478)
T PLN03126 157 -------YVKNM----ITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD--EELLELV 219 (478)
T ss_pred -------HHHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH--HHHHHHH
Confidence 22223 3334567999999999877777777777665543 32 248899999998753 3322222
Q ss_pred cccCCchHHHHHHhc
Q 040649 162 GLECPKPLKEILQLC 176 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~ 176 (371)
. ..+..++..+
T Consensus 220 ~----~~i~~~l~~~ 230 (478)
T PLN03126 220 E----LEVRELLSSY 230 (478)
T ss_pred H----HHHHHHHHhc
Confidence 2 1266666654
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.39 E-value=3.4e-12 Score=114.29 Aligned_cols=115 Identities=17% Similarity=0.255 Sum_probs=74.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCC--------------CCccceeEEEEeEEee---------CCcEEEEEeC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG--------------SSAITKTCEMKTTVLK---------DGQVVNVIDT 76 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--------------~~~~t~~~~~~~~~~~---------~~~~i~liDT 76 (371)
++|+++|+.++|||||+.+|+...-...... ..+.|.........+. .+..+++|||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 3799999999999999999975431111000 0123322222222231 1567899999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
||..+. ......++..+|++++|+|+..+.+......+..+... . .|+++|+||+|..
T Consensus 81 PG~~~f-----------~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVDF-----------SSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCcccc-----------HHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 998763 22233345567999999999987777766666655432 2 3899999999976
No 228
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.39 E-value=3.2e-12 Score=126.04 Aligned_cols=170 Identities=15% Similarity=0.138 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC---cc------------------------c--cCCCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR---AF------------------------K--ASAGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~---~~------------------------~--~~~~~~~~t~~~~~~~~~~~ 66 (371)
..+..+|+++|+.++|||||+..|+... .. + ......+.|.......+.+
T Consensus 4 ~k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~- 82 (446)
T PTZ00141 4 EKTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (446)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-
Confidence 3456899999999999999999886311 00 0 0001135566555555555
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHhCCCCCCe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-------SQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-------~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
++..++||||||..+ +...+......+|++++|+|+..+. .......+..+.. +|. .+
T Consensus 83 ~~~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~-~gi---~~ 147 (446)
T PTZ00141 83 PKYYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT-LGV---KQ 147 (446)
T ss_pred CCeEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH-cCC---Ce
Confidence 778999999999543 2333333445779999999998654 2444555555443 343 26
Q ss_pred EEEEEeCCCCCC--CchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHH------------HHHHHHH
Q 040649 140 MIVVFTGGDDLE--DNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQ------------QLLSLVN 205 (371)
Q Consensus 140 ~ilv~tk~D~~~--~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~------------~Ll~~i~ 205 (371)
+|+++||+|... .+...++..... +..++...+.... -.+..+.|+.++.++. .|++.+.
T Consensus 148 iiv~vNKmD~~~~~~~~~~~~~i~~~-----i~~~l~~~g~~~~-~~~~ipiSa~~g~ni~~~~~~~~Wy~G~tL~~~l~ 221 (446)
T PTZ00141 148 MIVCINKMDDKTVNYSQERYDEIKKE-----VSAYLKKVGYNPE-KVPFIPISGWQGDNMIEKSDNMPWYKGPTLLEALD 221 (446)
T ss_pred EEEEEEccccccchhhHHHHHHHHHH-----HHHHHHhcCCCcc-cceEEEeecccCCCcccCCCCCcccchHHHHHHHh
Confidence 889999999432 222445544444 6666665442100 0011234556666664 3666665
Q ss_pred HH
Q 040649 206 AV 207 (371)
Q Consensus 206 ~~ 207 (371)
.+
T Consensus 222 ~~ 223 (446)
T PTZ00141 222 TL 223 (446)
T ss_pred CC
Confidence 54
No 229
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.39 E-value=5.1e-13 Score=107.69 Aligned_cols=116 Identities=21% Similarity=0.175 Sum_probs=64.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-c-CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK-A-SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~-~-~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+|+|+|++|+|||||+++|++..... . .....+.+.......... +...+.++|++|....... ...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~~~-------~~~--- 69 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFYSQ-------HQF--- 69 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHHCT-------SHH---
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceeccc-------ccc---
Confidence 68999999999999999999887641 1 111122222222211111 3335889999996431111 011
Q ss_pred hhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
....+|++++|+|.+++-+-.. ..++.++...-+.....|+++|.||.|
T Consensus 70 -~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 70 -FLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp -HHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred -hhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 1334599999999984433222 223344444332111249999999998
No 230
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=6.4e-12 Score=121.95 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=114.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+.|.++|+...|||||+..|-+..+ ...-.++.|.....+.+... +...++|+||||+-.+ ...-
T Consensus 6 PvVtimGHVDHGKTtLLD~IR~t~V--a~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~mR 72 (509)
T COG0532 6 PVVTIMGHVDHGKTTLLDKIRKTNV--AAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TAMR 72 (509)
T ss_pred CEEEEeCcccCCccchhhhHhcCcc--ccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HHHH
Confidence 6799999999999999999998887 33445788877777777664 3479999999995431 1111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..-..-.|+++||+++++++.+...+.+..++.. . .|+++.+||+|..+.++.....-+.. ..-..+.++
T Consensus 73 aRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a---~--vP~iVAiNKiDk~~~np~~v~~el~~-----~gl~~E~~g 142 (509)
T COG0532 73 ARGASVTDIAILVVAADDGVMPQTIEAINHAKAA---G--VPIVVAINKIDKPEANPDKVKQELQE-----YGLVPEEWG 142 (509)
T ss_pred hcCCccccEEEEEEEccCCcchhHHHHHHHHHHC---C--CCEEEEEecccCCCCCHHHHHHHHHH-----cCCCHhhcC
Confidence 2223446999999999999999999999988864 2 39999999999986644333322221 011122223
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.- ..| .+.||+++.|+++|++.+.-+
T Consensus 143 g~-v~~---VpvSA~tg~Gi~eLL~~ill~ 168 (509)
T COG0532 143 GD-VIF---VPVSAKTGEGIDELLELILLL 168 (509)
T ss_pred Cc-eEE---EEeeccCCCCHHHHHHHHHHH
Confidence 22 221 347999999999999987644
No 231
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.39 E-value=2.4e-11 Score=99.93 Aligned_cols=157 Identities=18% Similarity=0.207 Sum_probs=107.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+++|..||||||+++.++|.+. . ...+|...+..+..+ ++..++++|.-|-- .+..++.
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~--~---~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~-----------~lr~~W~ 78 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT--D---TISPTLGFQIKTLEY-KGYTLNIWDVGGQK-----------TLRSYWK 78 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc--c---ccCCccceeeEEEEe-cceEEEEEEcCCcc-----------hhHHHHH
Confidence 58999999999999999999999874 2 234466677777777 88999999998843 3667777
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCC-chhhHHHHhcccCCchHHHHHHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLED-NEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~-~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.++...|++|||+|..++..-.+ ....|+..+... +..|++++.||.|..+. ...++...+. +..+.+.
T Consensus 79 nYfestdglIwvvDssD~~r~~e--~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~------L~~l~ks 150 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQE--CKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALD------LEELAKS 150 (185)
T ss_pred HhhhccCeEEEEEECchHHHHHH--HHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHhhC------HHHhccc
Confidence 78888899999999975443322 333333333211 23599999999997744 1123332222 6777777
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
|+.+++.. |+.++.++.+-++++.+
T Consensus 151 ~~~~l~~c------s~~tge~l~~gidWL~~ 175 (185)
T KOG0073|consen 151 HHWRLVKC------SAVTGEDLLEGIDWLCD 175 (185)
T ss_pred cCceEEEE------eccccccHHHHHHHHHH
Confidence 77777654 44455555555555553
No 232
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.38 E-value=3.1e-12 Score=125.84 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=102.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC-CCCccceeEEEEeE---------------Eee-------------
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSAITKTCEMKTT---------------VLK------------- 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-~~~~~t~~~~~~~~---------------~~~------------- 66 (371)
..+..+|+++|+...|||||+.+|+|.....-.. ...+.|....+... .++
T Consensus 31 ~~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (460)
T PTZ00327 31 RQATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG 110 (460)
T ss_pred CCCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence 3466899999999999999999999875422110 01122211111100 000
Q ss_pred ----CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHhCCCCCCeEE
Q 040649 67 ----DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-FSQEEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 67 ----~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-~~~~~~~~l~~l~~~~~~~~~~~~i 141 (371)
....+++|||||.. . +.+.+......+|++++|+|+..+ ........+..+ ..+|. .++|
T Consensus 111 ~~~~~~~~i~~IDtPGH~-------~----fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~-~~lgi---~~iI 175 (460)
T PTZ00327 111 HKMTLKRHVSFVDCPGHD-------I----LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAV-EIMKL---KHII 175 (460)
T ss_pred ccccccceEeeeeCCCHH-------H----HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHH-HHcCC---CcEE
Confidence 12478999999943 2 333333344567999999999864 344444444433 33443 3899
Q ss_pred EEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 142 lv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+|+||+|.... ..+.+.... ++.++..+.. ......+.||.++.|++.|++.|...++.
T Consensus 176 VvlNKiDlv~~--~~~~~~~~e-----i~~~l~~~~~---~~~~iipVSA~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 176 ILQNKIDLVKE--AQAQDQYEE-----IRNFVKGTIA---DNAPIIPISAQLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred EEEecccccCH--HHHHHHHHH-----HHHHHHhhcc---CCCeEEEeeCCCCCCHHHHHHHHHhhCCC
Confidence 99999998754 344433332 4444432211 11122447888899999999999976654
No 233
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=4.9e-12 Score=122.03 Aligned_cols=167 Identities=20% Similarity=0.254 Sum_probs=118.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-------------CCCCccceeEEEEeEEeeC--CcEEEEEeCCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-------------AGSSAITKTCEMKTTVLKD--GQVVNVIDTPGLFD 81 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~~--~~~i~liDTPG~~~ 81 (371)
+...++.+|-+...|||||..+|+...-+... ..-.++|...+..+..+.+ ...+++|||||..|
T Consensus 58 ~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvD 137 (650)
T KOG0462|consen 58 ENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVD 137 (650)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCccc
Confidence 45678999999999999999997632211110 0114788888877777733 26899999999998
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
++.. ..+.+..+ +++|+|+|+..+........+....+ ... .+|.|+||+|....+.+.+.
T Consensus 138 Fs~E-------VsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe---~~L--~iIpVlNKIDlp~adpe~V~--- 198 (650)
T KOG0462|consen 138 FSGE-------VSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFE---AGL--AIIPVLNKIDLPSADPERVE--- 198 (650)
T ss_pred ccce-------ehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHH---cCC--eEEEeeeccCCCCCCHHHHH---
Confidence 7543 33444444 99999999998877766555444333 233 89999999998766444333
Q ss_pred cccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 162 GLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.+ +..++..++..+.. .||++|.++.+||+.|.+.++...+
T Consensus 199 ~q-----~~~lF~~~~~~~i~------vSAK~G~~v~~lL~AII~rVPpP~~ 239 (650)
T KOG0462|consen 199 NQ-----LFELFDIPPAEVIY------VSAKTGLNVEELLEAIIRRVPPPKG 239 (650)
T ss_pred HH-----HHHHhcCCccceEE------EEeccCccHHHHHHHHHhhCCCCCC
Confidence 22 56677777766555 6888999999999999999887655
No 234
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.38 E-value=1.6e-11 Score=100.47 Aligned_cols=158 Identities=20% Similarity=0.204 Sum_probs=94.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|.+|+|||||+-+++...+-+.. +..+..+........ +| ..+.||||.|.- .+.-.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~fd~~~--~~tIGvDFkvk~m~v-dg~~~KlaiWDTAGqE-----------rFRtL 76 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFVSNTFDDLH--PTTIGVDFKVKVMQV-DGKRLKLAIWDTAGQE-----------RFRTL 76 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHHhcccCccC--CceeeeeEEEEEEEE-cCceEEEEEEeccchH-----------hhhcc
Confidence 379999999999999999998865542221 121223344444444 44 378999999943 24445
Q ss_pred HhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++.++.++|+|.|++.+ |... ..++..+.....++ ..-.++|.||+|.-.....+-++-+ .+..
T Consensus 77 TpSyyRgaqGiIlVYDVT~Rdtf~kL-d~W~~Eld~Ystn~-diikmlVgNKiDkes~R~V~reEG~---------kfAr 145 (209)
T KOG0080|consen 77 TPSYYRGAQGIILVYDVTSRDTFVKL-DIWLKELDLYSTNP-DIIKMLVGNKIDKESERVVDREEGL---------KFAR 145 (209)
T ss_pred CHhHhccCceeEEEEEccchhhHHhH-HHHHHHHHhhcCCc-cHhHhhhcccccchhcccccHHHHH---------HHHH
Confidence 56778899999999999854 3333 23444444433222 1246789999996533111222111 1222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
. .+..++ ..||++..+++..++-+..-
T Consensus 146 ~--h~~LFi----E~SAkt~~~V~~~FeelveK 172 (209)
T KOG0080|consen 146 K--HRCLFI----ECSAKTRENVQCCFEELVEK 172 (209)
T ss_pred h--hCcEEE----EcchhhhccHHHHHHHHHHH
Confidence 2 122222 35788889998888766543
No 235
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.37 E-value=3.8e-12 Score=120.73 Aligned_cols=178 Identities=19% Similarity=0.160 Sum_probs=91.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccc-eeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAIT-KTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...+|+|+|.+|+|||||||+|.|...-..+....+++ ++.....+..+.-..+++||.||.+.+..+.. .+...
T Consensus 34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~~ 109 (376)
T PF05049_consen 34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLKE 109 (376)
T ss_dssp --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHHH
Confidence 35799999999999999999998754433333333331 12222233343456799999999986544433 23332
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC-CC----chhhH--HHHhcccCCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL-ED----NEKTL--EDYLGLECPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~-~~----~~~~l--~~~l~~~~~~~l 169 (371)
+. ....|.+|++.+. +|+..+..+...++.. | +|+.+|-||+|.. .. .+.++ ++.+.. .....
T Consensus 110 ~~--~~~yD~fiii~s~--rf~~ndv~La~~i~~~-g----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~-IR~~c 179 (376)
T PF05049_consen 110 VK--FYRYDFFIIISSE--RFTENDVQLAKEIQRM-G----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQE-IRENC 179 (376)
T ss_dssp TT--GGG-SEEEEEESS--S--HHHHHHHHHHHHT-T-----EEEEEE--HHHHHHHHHCC-STT--HHTHHHH-HHHHH
T ss_pred cc--ccccCEEEEEeCC--CCchhhHHHHHHHHHc-C----CcEEEEEecccccHhhhhccCCcccCHHHHHHH-HHHHH
Confidence 22 3345877776653 6999999888888875 3 3999999999951 00 00111 112221 11112
Q ss_pred HHHHHh---cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 170 KEILQL---CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 170 ~~~~~~---~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.+.+.. +..++|++++..... .....|.+.+..-++.+..
T Consensus 180 ~~~L~k~gv~~P~VFLVS~~dl~~----yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 180 LENLQKAGVSEPQVFLVSSFDLSK----YDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHHHHCTT-SS--EEEB-TTTTTS----TTHHHHHHHHHHHS-GGGH
T ss_pred HHHHHHcCCCcCceEEEeCCCccc----CChHHHHHHHHHHhHHHHH
Confidence 222222 345788888765433 5677777777766555433
No 236
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.2e-11 Score=119.38 Aligned_cols=161 Identities=16% Similarity=0.161 Sum_probs=119.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+.|-++|+...|||||+.+|-+..+ .....+++|.....+.+.++.|..++|.||||.-- +...-.
T Consensus 153 pPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-----------F~aMRa 219 (683)
T KOG1145|consen 153 PPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-----------FSAMRA 219 (683)
T ss_pred CCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcHHH-----------HHHHHh
Confidence 46889999999999999999998877 33446788888777778888899999999999542 222222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
......|.+++|+.++++.-+...+.+...+.. ..|+|+.+||+|..+.+......-+.. ..-.++.+|+
T Consensus 220 RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A-----~VpiVvAinKiDkp~a~pekv~~eL~~-----~gi~~E~~GG 289 (683)
T KOG1145|consen 220 RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSA-----NVPIVVAINKIDKPGANPEKVKRELLS-----QGIVVEDLGG 289 (683)
T ss_pred ccCccccEEEEEEEccCCccHhHHHHHHHHHhc-----CCCEEEEEeccCCCCCCHHHHHHHHHH-----cCccHHHcCC
Confidence 334567999999999988988888888877754 249999999999886644433322221 1224555666
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+.. .+.||+++.+++.|.+.+.-
T Consensus 290 dVQv----ipiSAl~g~nl~~L~eaill 313 (683)
T KOG1145|consen 290 DVQV----IPISALTGENLDLLEEAILL 313 (683)
T ss_pred ceeE----EEeecccCCChHHHHHHHHH
Confidence 5544 34788999999999987653
No 237
>PRK00007 elongation factor G; Reviewed
Probab=99.36 E-value=1.3e-11 Score=128.41 Aligned_cols=120 Identities=20% Similarity=0.241 Sum_probs=85.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCccccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAFKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
....++|+|+|+.++|||||+|.|+ |........ ...++|.......+.+ .+..+++|||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 4456799999999999999999996 432110000 1235566665566666 7889999999997
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.++ ..+... +...+|++|+|+|+..+....+...+..+... + .|+++++||+|....
T Consensus 86 ~~f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~-~----~p~iv~vNK~D~~~~ 142 (693)
T PRK00007 86 VDF-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKY-K----VPRIAFVNKMDRTGA 142 (693)
T ss_pred HHH-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 542 223333 34455999999999888888888888877654 2 388999999998755
No 238
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.2e-11 Score=98.36 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=100.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.+|++||..|+|||.|++.++....|+......++ ......+.. .+...+.||||.|-- .+.....
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigv--dfmiktvev~gekiklqiwdtagqe-----------rfrsitq 74 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGV--DFMIKTVEVNGEKIKLQIWDTAGQE-----------RFRSITQ 74 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeee--eEEEEEEEECCeEEEEEEeeccchH-----------HHHHHHH
Confidence 58999999999999999999977665543333333 233344444 133478999999932 2444455
Q ss_pred hhcCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++..+|++++|.|++. +.-+.-..++..+......+. -.|+|.||+|..+. ..+... +.+-+....
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr--revp~q--------igeefs~~q 142 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR--REVPQQ--------IGEEFSEAQ 142 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh--hhhhHH--------HHHHHHHhh
Confidence 56777899999999983 333444677888887766554 67899999997644 222211 222222212
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.-++ ...||+...+++.|+..+.
T Consensus 143 dmyf-----letsakea~nve~lf~~~a 165 (213)
T KOG0095|consen 143 DMYF-----LETSAKEADNVEKLFLDLA 165 (213)
T ss_pred hhhh-----hhhcccchhhHHHHHHHHH
Confidence 2222 2367777889999887765
No 239
>PRK13351 elongation factor G; Reviewed
Probab=99.35 E-value=9.3e-12 Score=129.69 Aligned_cols=118 Identities=17% Similarity=0.201 Sum_probs=80.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc---cc----CC---------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF---KA----SA---------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~---~~----~~---------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
...+|+|+|+.|+|||||++.|+...-. .. +. ...+.|.......+.+ .+..+++|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4579999999999999999999743210 00 00 0123344444455556 788999999999765
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
. .. ....++..+|++++|+|++.+........+..+... . .|+++|+||+|....
T Consensus 86 f-------~~----~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~ 140 (687)
T PRK13351 86 F-------TG----EVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGA 140 (687)
T ss_pred H-------HH----HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCC
Confidence 2 12 223344566999999999877776666666655432 2 389999999998754
No 240
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.35 E-value=1.4e-11 Score=128.20 Aligned_cols=121 Identities=20% Similarity=0.191 Sum_probs=84.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc---CCC-------------CCccceeEEEEeEEeeCCcEEEEEeCCC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKA---SAG-------------SSAITKTCEMKTTVLKDGQVVNVIDTPG 78 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~---~~~-------------~~~~t~~~~~~~~~~~~~~~i~liDTPG 78 (371)
+....++|+|+|++++|||||+|+|++..-... ... ..++|.......+.+ .+..+++|||||
T Consensus 6 ~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG 84 (689)
T TIGR00484 6 DLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPG 84 (689)
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCC
Confidence 344567999999999999999999974221100 000 135566666666666 788999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+.. .+. ..+...+|++++|+|+..+....+...+..+... + .|+++|+||+|....
T Consensus 85 ~~~~~-------~~~----~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~-~----~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFT-------VEV----ERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRY-E----VPRIAFVNKMDKTGA 142 (689)
T ss_pred Ccchh-------HHH----HHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 87631 122 2334456999999999877777777777665543 2 389999999998754
No 241
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.34 E-value=1.2e-11 Score=123.95 Aligned_cols=118 Identities=15% Similarity=0.202 Sum_probs=77.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC--CCccccCC-----------C-------CCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG--RRAFKASA-----------G-------SSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g--~~~~~~~~-----------~-------~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
...+|+|+|++|+|||||++.|+. ......+. + ..+.|.......+.+ ++..+++||||
T Consensus 9 ~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEECC
Confidence 457999999999999999999862 11100000 0 012333344444555 78899999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|..+. ..+... ++..+|++|+|+|+..+.......++...... . .|+++++||+|....
T Consensus 88 G~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~---~--iPiiv~iNK~D~~~a 146 (526)
T PRK00741 88 GHEDF-------SEDTYR----TLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR---D--TPIFTFINKLDRDGR 146 (526)
T ss_pred Cchhh-------HHHHHH----HHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCccccc
Confidence 97653 122222 33456999999999877766655555544332 2 399999999997654
No 242
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.32 E-value=6e-11 Score=106.06 Aligned_cols=116 Identities=17% Similarity=0.140 Sum_probs=78.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeE-EeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTT-VLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~-~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+|+++|+.|+|||||++.+.+........ .|........ .... ...+.+|||+|..+ +...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHH
Confidence 799999999999999999999887643321 1111111111 1112 34688999999542 4455
Q ss_pred HhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...++.+++++++|+|... ++......+...+....+.. .|+++|.||+|+...
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDE 126 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccc
Confidence 6667889999999999873 23333344555556554322 499999999998765
No 243
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.32 E-value=8.1e-11 Score=99.15 Aligned_cols=155 Identities=16% Similarity=0.218 Sum_probs=102.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc-----CCCCCc---cceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA-----SAGSSA---ITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
..+|+|+|+.|+||||++..+.-...... ..+..+ .|....+..+.+.++..++++||||...
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------- 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------- 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH---------
Confidence 46899999999999999999986653221 222223 4555555566664558999999999543
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
+.-.+.....++.++++++|.+.+.+......+..+..... .|+++++||.|+.+. ..++.++
T Consensus 81 --F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a-----------~ppe~i~ 143 (187)
T COG2229 81 --FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDA-----------LPPEKIR 143 (187)
T ss_pred --HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCC-----------CCHHHHH
Confidence 23333445667899999999886666666777777775533 399999999998866 2333455
Q ss_pred HHHHhc--CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 171 EILQLC--DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 171 ~~~~~~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+++..+ ..+++.. ++..+.+..+.++.+.
T Consensus 144 e~l~~~~~~~~vi~~------~a~e~~~~~~~L~~ll 174 (187)
T COG2229 144 EALKLELLSVPVIEI------DATEGEGARDQLDVLL 174 (187)
T ss_pred HHHHhccCCCceeee------ecccchhHHHHHHHHH
Confidence 566655 3344433 3333455555555443
No 244
>PRK12739 elongation factor G; Reviewed
Probab=99.32 E-value=1.6e-11 Score=127.62 Aligned_cols=119 Identities=23% Similarity=0.288 Sum_probs=84.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc---cccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA---FKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~---~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
...++|+++|+.++|||||+++|+...- ..... ...++|.......+.+ ++..+++|||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 3457899999999999999999974211 00000 1235566666666666 88899999999975
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+ ...+. ..+...+|++|+|+|+..++...+...+..+... + .|+++++||+|....
T Consensus 85 ~-------f~~e~----~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~-~----~p~iv~iNK~D~~~~ 140 (691)
T PRK12739 85 D-------FTIEV----ERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKY-G----VPRIVFVNKMDRIGA 140 (691)
T ss_pred H-------HHHHH----HHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc-C----CCEEEEEECCCCCCC
Confidence 4 22233 3334456999999999988888887777776543 2 388999999998854
No 245
>PTZ00258 GTP-binding protein; Provisional
Probab=99.30 E-value=1.6e-10 Score=111.02 Aligned_cols=91 Identities=16% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~ 81 (371)
....|+|||.||+|||||+|+|++... .....+++|..+....+.+++. ..+.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~--~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQV--PAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCcc--cccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 457899999999999999999998875 2233355565555544444221 2489999999986
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
...........+...+ ..+|++++|+|+.
T Consensus 98 ga~~g~gLg~~fL~~I----r~aD~il~VVd~f 126 (390)
T PTZ00258 98 GASEGEGLGNAFLSHI----RAVDGIYHVVRAF 126 (390)
T ss_pred CCcchhHHHHHHHHHH----HHCCEEEEEEeCC
Confidence 5433334444454444 4569999999973
No 246
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.30 E-value=1.4e-10 Score=104.30 Aligned_cols=112 Identities=17% Similarity=0.161 Sum_probs=74.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..++..|+|+|++|+|||||+|.|++...........+ + . .... ..+..++++||||.. ..+..
T Consensus 36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g-~--i--~i~~-~~~~~i~~vDtPg~~----------~~~l~ 99 (225)
T cd01882 36 EPPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKG-P--I--TVVT-GKKRRLTFIECPNDI----------NAMID 99 (225)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccc-c--E--EEEe-cCCceEEEEeCCchH----------HHHHH
Confidence 45567899999999999999999997633211111111 1 1 1112 267789999999832 12223
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLED 152 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~ 152 (371)
.+ ..+|++++|+|++.++...+..++..+... | .| +++|+||+|....
T Consensus 100 ~a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~-g----~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 100 IA----KVADLVLLLIDASFGFEMETFEFLNILQVH-G----FPRVMGVLTHLDLFKK 148 (225)
T ss_pred HH----HhcCEEEEEEecCcCCCHHHHHHHHHHHHc-C----CCeEEEEEeccccCCc
Confidence 32 456999999999877877777777776643 3 25 5569999998744
No 247
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.30 E-value=3.1e-11 Score=101.21 Aligned_cols=169 Identities=15% Similarity=0.129 Sum_probs=101.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.-++|+++|.+|+|||||+|...............+ .......+.. +++ .+.||||.|-- .+..
T Consensus 8 ~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg--adFltKev~V-d~~~vtlQiWDTAGQE-----------RFqs 73 (210)
T KOG0394|consen 8 TLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG--ADFLTKEVQV-DDRSVTLQIWDTAGQE-----------RFQS 73 (210)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccc--hhheeeEEEE-cCeEEEEEEEecccHH-----------Hhhh
Confidence 347999999999999999999987765332111111 1122222223 333 67899999932 2333
Q ss_pred HHhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.-...+.++|++++|+|++.+ +...+...-+.|...-+. +-.-|.||+.||+|........+ .....+..
T Consensus 74 Lg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~V-------S~~~Aq~W 146 (210)
T KOG0394|consen 74 LGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQV-------SEKKAQTW 146 (210)
T ss_pred cccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCcccee-------eHHHHHHH
Confidence 345678899999999999843 333333333444433221 22349999999999754310011 11123334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...-+ .+.+| ..||+...+|.+.++.+....-.+.
T Consensus 147 C~s~g-nipyf----EtSAK~~~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 147 CKSKG-NIPYF----ETSAKEATNVDEAFEEIARRALANE 181 (210)
T ss_pred HHhcC-CceeE----EecccccccHHHHHHHHHHHHHhcc
Confidence 43333 33444 3688888999999999887666554
No 248
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.30 E-value=3.9e-11 Score=120.34 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC--CCccccCCC------------------CCccceeEEEEeEEeeCCcEEEEEeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG--RRAFKASAG------------------SSAITKTCEMKTTVLKDGQVVNVIDT 76 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g--~~~~~~~~~------------------~~~~t~~~~~~~~~~~~~~~i~liDT 76 (371)
....+|+|+|++|+|||||++.|+. ......+.. ..+.|.......+.+ .+..++++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 3457999999999999999999852 111100000 013344444445555 7889999999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
||..+. .... ..++..+|++|+|+|+..++......++..+.. . . .|+++++||+|....
T Consensus 88 PG~~df-------~~~~----~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~-~--~--~PiivviNKiD~~~~ 147 (527)
T TIGR00503 88 PGHEDF-------SEDT----YRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRL-R--D--TPIFTFMNKLDRDIR 147 (527)
T ss_pred CChhhH-------HHHH----HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHh-c--C--CCEEEEEECccccCC
Confidence 997542 1222 333456799999999987776665656554443 1 2 399999999997644
No 249
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.29 E-value=2.3e-10 Score=110.86 Aligned_cols=89 Identities=20% Similarity=0.150 Sum_probs=57.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--------------------eC---CcEEEEEeC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~i~liDT 76 (371)
.+|++||.+|+|||||+|+|++..... ...+++|..+....... .+ ...+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~~--~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVEI--ANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCcccc--cCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 479999999999999999999886522 22334443333322111 01 135789999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
||+.............+...+. .+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 9997643222334444444444 559999999985
No 250
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.28 E-value=4.4e-11 Score=117.93 Aligned_cols=141 Identities=17% Similarity=0.210 Sum_probs=85.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCcc-----------c---------------cCCCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAF-----------K---------------ASAGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~-----------~---------------~~~~~~~~t~~~~~~~~~~~ 66 (371)
..+..+|+++|+.++|||||+-.|+ |.... . ......++|.......+.+
T Consensus 4 ~k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~- 82 (447)
T PLN00043 4 EKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET- 82 (447)
T ss_pred CCceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-
Confidence 3566899999999999999998876 21100 0 0001135566665555555
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-CC------HHHHHHHHHHHHHhCCCCCCe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-FS------QEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-~~------~~~~~~l~~l~~~~~~~~~~~ 139 (371)
.+..++++||||..+ +...+......+|++|+|+|+..+ +. ......+..+.. +|. .+
T Consensus 83 ~~~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~-~gi---~~ 147 (447)
T PLN00043 83 TKYYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT-LGV---KQ 147 (447)
T ss_pred CCEEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH-cCC---Cc
Confidence 778999999999543 333334445677999999999853 21 233333333322 343 26
Q ss_pred EEEEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhcC
Q 040649 140 MIVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 140 ~ilv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
+|+++||+|.... ....+++.+.. ++.++...+
T Consensus 148 iIV~vNKmD~~~~~~~~~~~~~i~~e-----i~~~l~~~g 182 (447)
T PLN00043 148 MICCCNKMDATTPKYSKARYDEIVKE-----VSSYLKKVG 182 (447)
T ss_pred EEEEEEcccCCchhhhHHHHHHHHHH-----HHHHHHHcC
Confidence 8999999996522 11233433443 666666554
No 251
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=2.5e-10 Score=95.99 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=99.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+++++|.+|+|||.|+...+.....+....+.++ +.....+.. .....+.||||.|... +....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGv--efg~r~~~id~k~IKlqiwDtaGqe~-----------frsv~ 72 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGV--EFGARMVTIDGKQIKLQIWDTAGQES-----------FRSVT 72 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceeee--eeceeEEEEcCceEEEEEEecCCcHH-----------HHHHH
Confidence 378999999999999999999977653332222222 222223333 1234789999999432 45556
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++-++|+|+|++.+-+ ..-..+|.-++......+ .++++.||+|+......+-+ .-....+..
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm--vImLiGNKsDL~~rR~Vs~E---------EGeaFA~eh 141 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM--VIMLIGNKSDLEARREVSKE---------EGEAFAREH 141 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc--EEEEEcchhhhhccccccHH---------HHHHHHHHc
Confidence 667888999999999984422 222445666666543443 78899999997654211111 122333332
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+ ++|- ..||++++++++.+.-+.
T Consensus 142 g---Lifm---ETSakt~~~VEEaF~nta 164 (216)
T KOG0098|consen 142 G---LIFM---ETSAKTAENVEEAFINTA 164 (216)
T ss_pred C---ceee---hhhhhhhhhHHHHHHHHH
Confidence 2 2222 579999999999887665
No 252
>PLN00023 GTP-binding protein; Provisional
Probab=99.27 E-value=8.5e-11 Score=109.46 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=75.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--------------CCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--------------DGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~i~liDTPG~~~~~ 83 (371)
...+|+|+|.+|+|||||++.+++...........+.+ .....+.+. ....+.|+||+|-..
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d--~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqEr-- 95 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCT--VGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHER-- 95 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeee--EEEEEEEECCcccccccccccCCceEEEEEEECCCChh--
Confidence 34799999999999999999999776422211111222 111222221 123589999999532
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC----------CCCCeEEEEEeCCCCCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK----------KIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~ilv~tk~D~~~ 151 (371)
+..+...++.+++++|+|+|++++-+-.. ..++..+....+. ....|++||.||+|+..
T Consensus 96 ---------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~ 165 (334)
T PLN00023 96 ---------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAP 165 (334)
T ss_pred ---------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccc
Confidence 33444556788999999999985433322 2344455443210 01248999999999754
No 253
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=6.3e-11 Score=111.59 Aligned_cols=142 Identities=18% Similarity=0.258 Sum_probs=94.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCccc-----------cCCC---------------CCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAFK-----------ASAG---------------SSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~-----------~~~~---------------~~~~t~~~~~~~~~~~ 66 (371)
.++..+++|+|+..+|||||+-.|+ |.-... .+.. ..++|.+.....+..
T Consensus 4 ~Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet- 82 (428)
T COG5256 4 EKPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET- 82 (428)
T ss_pred CCCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-
Confidence 4567899999999999999997765 221100 0000 026676666666665
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
+...++|+|+||.-| +..++. .....+|+.++|+|++.+ .....++-+ .|...+|. ..
T Consensus 83 ~k~~~tIiDaPGHrd-------FvknmI----tGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~-~La~tlGi---~~ 147 (428)
T COG5256 83 DKYNFTIIDAPGHRD-------FVKNMI----TGASQADVAVLVVDARDGEFEAGFGVGGQTREHA-FLARTLGI---KQ 147 (428)
T ss_pred CCceEEEeeCCchHH-------HHHHhh----cchhhccEEEEEEECCCCccccccccCCchhHHH-HHHHhcCC---ce
Confidence 777899999999544 222232 334456999999999854 344444443 44444564 49
Q ss_pred EEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 140 MIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 140 ~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+|+++||+|..+-+...+++.... +..+++.||-
T Consensus 148 lIVavNKMD~v~wde~rf~ei~~~-----v~~l~k~~G~ 181 (428)
T COG5256 148 LIVAVNKMDLVSWDEERFEEIVSE-----VSKLLKMVGY 181 (428)
T ss_pred EEEEEEcccccccCHHHHHHHHHH-----HHHHHHHcCC
Confidence 999999999987665667766665 6677777763
No 254
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.26 E-value=1.5e-11 Score=96.70 Aligned_cols=143 Identities=18% Similarity=0.227 Sum_probs=90.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.++++||++|+|||||+++|-|....... |.- +.+ ... ..|||||.+- ....+...+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~lykK------TQA-----ve~-~d~--~~IDTPGEy~-------~~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLYKK------TQA-----VEF-NDK--GDIDTPGEYF-------EHPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhhcc------cce-----eec-cCc--cccCCchhhh-------hhhHHHHHHHH
Confidence 58999999999999999999998864321 211 222 111 3699999653 22334455555
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|++++|..++++-+...- . |-....+|+|-|+||.|+.++ ..++ ..+.++...|..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p----~----f~~~~~k~vIgvVTK~DLaed--~dI~---------~~~~~L~eaGa~ 121 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPP----G----FLDIGVKKVIGVVTKADLAED--ADIS---------LVKRWLREAGAE 121 (148)
T ss_pred HhhccceeeeeecccCccccCCc----c----cccccccceEEEEecccccch--HhHH---------HHHHHHHHcCCc
Confidence 66788999999988754222111 1 111223489999999998865 3333 144556655643
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
.++. .|+....|+++|++++...
T Consensus 122 ~IF~-----~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 122 PIFE-----TSAVDNQGVEELVDYLASL 144 (148)
T ss_pred ceEE-----EeccCcccHHHHHHHHHhh
Confidence 3322 3344568999999887643
No 255
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.25 E-value=1.4e-10 Score=109.96 Aligned_cols=131 Identities=12% Similarity=0.159 Sum_probs=82.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CCCCc---cceeEEE---EeEEeeCC----cEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSA---ITKTCEM---KTTVLKDG----QVVN 72 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~~~~---~t~~~~~---~~~~~~~~----~~i~ 72 (371)
+....|+|+|+.++|||||||.+++.-+.+.. .+..+ .|+++.+ ........ .++.
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vr 94 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVR 94 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEE
Confidence 34589999999999999999999998322211 12233 4555555 33333222 5889
Q ss_pred EEeCCCCCCCCcchHHHHHH--------------HHH-----HHhhhcCCceEEEEEE-eCC------CCCCHHHHHHHH
Q 040649 73 VIDTPGLFDSSAESEYVSKE--------------IAK-----CIGMAKDGIHAVLLVF-SVR------SRFSQEEEAAVH 126 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~e--------------i~~-----~~~~~~~~~d~vl~v~-d~~------~~~~~~~~~~l~ 126 (371)
+|||+|+.+.+.....-... +.. ........++..|+|. |.+ ..+...+..++.
T Consensus 95 lIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~ 174 (492)
T TIGR02836 95 LVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIE 174 (492)
T ss_pred EEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHH
Confidence 99999998754321111111 000 0111123668888888 764 356777888888
Q ss_pred HHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 127 RLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.|++. .+|+++|+|+.|-..+
T Consensus 175 eLk~~-----~kPfiivlN~~dp~~~ 195 (492)
T TIGR02836 175 ELKEL-----NKPFIILLNSTHPYHP 195 (492)
T ss_pred HHHhc-----CCCEEEEEECcCCCCc
Confidence 88865 2499999999995433
No 256
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=1.7e-10 Score=99.09 Aligned_cols=118 Identities=20% Similarity=0.181 Sum_probs=82.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||-|+-..+.........++.+ .......... ++. ...||||.|.- .+..
T Consensus 13 ylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG--vef~t~t~~v-d~k~vkaqIWDTAGQE-----------RyrA 78 (222)
T KOG0087|consen 13 YLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG--VEFATRTVNV-DGKTVKAQIWDTAGQE-----------RYRA 78 (222)
T ss_pred eEEEEEEeCCCccchhHHHHHhcccccCccccccee--EEEEeeceee-cCcEEEEeeecccchh-----------hhcc
Confidence 346899999999999999999987766333222222 2233333333 444 67899999933 2445
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
....++.++.+.++|.|++.+.+-. -..+|..|+.+..+.+ ++++|.||+|+..
T Consensus 79 itSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~ni--vimLvGNK~DL~~ 133 (222)
T KOG0087|consen 79 ITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNI--VIMLVGNKSDLNH 133 (222)
T ss_pred ccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCe--EEEEeecchhhhh
Confidence 5667788999999999998444433 3567777777776666 9999999999753
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.22 E-value=1.2e-11 Score=106.15 Aligned_cols=120 Identities=14% Similarity=0.223 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...|+|+|++|||||+|+..|.......+..+.. .... ......+..+.|||+||..... ..+...+
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~e-----~n~~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~~ 70 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSME-----NNIAYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDEL 70 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B---SS-----EEEECCGSSTCGTCECEEEETT-HCCC-------HHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCeecccc-----CCceEEeecCCCCEEEEEECCCcHHHH-------HHHHHhh
Confidence 3689999999999999999998664433322211 1111 1111245689999999976532 1222221
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~ 152 (371)
.....+.+||||+|+. .+...-....+.|..++- .....|++|+.||.|....
T Consensus 71 -~~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A 127 (181)
T PF09439_consen 71 -KYLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTA 127 (181)
T ss_dssp -HHHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT-
T ss_pred -hchhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCcccccc
Confidence 1244579999999987 233333444444444331 1223599999999998865
No 258
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=1.5e-10 Score=93.40 Aligned_cols=162 Identities=13% Similarity=0.107 Sum_probs=99.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEE-eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTV-LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~-~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+++++|.+.+|||||+-+-+|....+.-.+..++. .....+. ......+.|+||.|.-. +....
T Consensus 21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGid--FKvKTvyr~~kRiklQiwDTagqEr-----------yrtiT 87 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGID--FKVKTVYRSDKRIKLQIWDTAGQER-----------YRTIT 87 (193)
T ss_pred eeeEEEEccCCccchhhhHHhhccccccceeeeeeee--EEEeEeeecccEEEEEEEecccchh-----------hhHHH
Confidence 3589999999999999999999877633322223322 2222221 11223789999999431 33444
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.+++++|+++|+++.-+ ..-..+...++...-.. -|+|+|.||||+-.+.--+. +....+....
T Consensus 88 TayyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~---------e~g~~l~~~L 156 (193)
T KOG0093|consen 88 TAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISH---------ERGRQLADQL 156 (193)
T ss_pred HHHhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeH---------HHHHHHHHHh
Confidence 567889999999999983221 11233444454443233 39999999999765521111 1234455555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|-.++ ..|++..-++.++++.+...+-.
T Consensus 157 GfefF------EtSaK~NinVk~~Fe~lv~~Ic~ 184 (193)
T KOG0093|consen 157 GFEFF------ETSAKENINVKQVFERLVDIICD 184 (193)
T ss_pred ChHHh------hhcccccccHHHHHHHHHHHHHH
Confidence 54333 35677778888888887765543
No 259
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.21 E-value=5.9e-10 Score=104.93 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=54.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--------------------e---CCcEEEEEeCCC
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--------------------K---DGQVVNVIDTPG 78 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~i~liDTPG 78 (371)
|+++|.+++|||||+|+|++..... ...+.+|..+......+ . ....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~~--~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVEI--ANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCcc--cCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 5899999999999999999876521 22233333333221111 0 124689999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
+.............+...+ ..+|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~i----r~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDL----RDADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHH----HHCCEEEEEEeCC
Confidence 9654322223334444444 4559999999986
No 260
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.20 E-value=4e-10 Score=91.09 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=98.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.++++|.+|+|||||+-.+..... .. .....+..+........+ +...+.|+||.|- +.+......
T Consensus 10 kllIigDsgVGKssLl~rF~ddtF-s~-sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-----------ErFrtitst 76 (198)
T KOG0079|consen 10 KLLIIGDSGVGKSSLLLRFADDTF-SG-SYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-----------ERFRTITST 76 (198)
T ss_pred HHHeecCCcccHHHHHHHHhhccc-cc-ceEEEeeeeEEEEEeecCCcEEEEEEeecccH-----------HHHHHHHHH
Confidence 568999999999999988875543 21 111111222333344442 2337889999992 224444556
Q ss_pred hcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
++.++|++++|.|+++.-+ ..-..+|+.++..++. .|-++|.||.|..+.. .++ ....+.+....+.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~Rr--vV~-------t~dAr~~A~~mgi 144 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERR--VVD-------TEDARAFALQMGI 144 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccce--eee-------hHHHHHHHHhcCc
Confidence 7889999999999984322 2235566666665552 4899999999976541 111 1112334443344
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.++. .|++...+++..+..|...+..
T Consensus 145 e~FE------TSaKe~~NvE~mF~cit~qvl~ 170 (198)
T KOG0079|consen 145 ELFE------TSAKENENVEAMFHCITKQVLQ 170 (198)
T ss_pred hhee------hhhhhcccchHHHHHHHHHHHH
Confidence 3332 6777778888888887765543
No 261
>PTZ00416 elongation factor 2; Provisional
Probab=99.18 E-value=1.5e-10 Score=122.48 Aligned_cols=119 Identities=18% Similarity=0.226 Sum_probs=79.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------CccceeEEEEeEEee---------CCcEEE
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--------------SAITKTCEMKTTVLK---------DGQVVN 72 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~---------~~~~i~ 72 (371)
.....+|+++|+.++|||||+++|++..-....... .+.|.........+. .+..++
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 345679999999999999999999863321110000 122222222223331 145799
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
++||||+.+. ..+ +..+...+|++|+|+|+..++...+...++.+... . .|+++++||+|..
T Consensus 96 liDtPG~~~f-------~~~----~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~---~--~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVDF-------SSE----VTAALRVTDGALVVVDCVEGVCVQTETVLRQALQE---R--IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHhH-------HHH----HHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHc---C--CCEEEEEEChhhh
Confidence 9999998652 222 34445677999999999988888887777766643 2 3999999999987
No 262
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.16 E-value=1.4e-10 Score=94.70 Aligned_cols=160 Identities=19% Similarity=0.201 Sum_probs=102.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+++|..-+|||||+=..+...+ .....+. ....+........ ..-.+.||||.|.-. +...-
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF-n~kHlsT-lQASF~~kk~n~ed~ra~L~IWDTAGQEr-----------fHALG 79 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKF-NCKHLST-LQASFQNKKVNVEDCRADLHIWDTAGQER-----------FHALG 79 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhc-chhhHHH-HHHHHhhcccccccceeeeeeeeccchHh-----------hhccC
Confidence 37899999999999999877664433 2211000 0000111111221 223688999999432 33333
Q ss_pred hhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.+.+++|+|+|++++-+ ..-+.++..|+..+|+.+ .++||.||+|+-.....+..+ ...+.+..
T Consensus 80 PIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei--~l~IVGNKiDLEeeR~Vt~qe---------Ae~YAesv 148 (218)
T KOG0088|consen 80 PIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEI--ELLIVGNKIDLEEERQVTRQE---------AEAYAESV 148 (218)
T ss_pred ceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCee--EEEEecCcccHHHhhhhhHHH---------HHHHHHhh
Confidence 456889999999999985433 224677888999999887 999999999965442222221 23345555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
|..++. .||+...||.+|++.+...+
T Consensus 149 GA~y~e------TSAk~N~Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 149 GALYME------TSAKDNVGISELFESLTAKM 174 (218)
T ss_pred chhhee------cccccccCHHHHHHHHHHHH
Confidence 555554 68888899999999887543
No 263
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.16 E-value=1.4e-09 Score=102.64 Aligned_cols=111 Identities=14% Similarity=0.158 Sum_probs=63.1
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHH-HHHHhCCCCCCeEEEEEeC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHR-LQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~-l~~~~~~~~~~~~ilv~tk 146 (371)
+..+.||||+|...... . + .. -+|.+++|++.. +..+...+.. +.+. .-++|+||
T Consensus 148 g~d~viieT~Gv~qs~~---~----i---~~----~aD~vlvv~~p~---~gd~iq~~k~gi~E~-------aDIiVVNK 203 (332)
T PRK09435 148 GYDVILVETVGVGQSET---A----V---AG----MVDFFLLLQLPG---AGDELQGIKKGIMEL-------ADLIVINK 203 (332)
T ss_pred CCCEEEEECCCCccchh---H----H---HH----hCCEEEEEecCC---chHHHHHHHhhhhhh-------hheEEeeh
Confidence 46789999999885311 1 1 22 359999997532 2333333222 2222 34899999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee-cCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+|.... ......... +...+.....+...+ .+....|+.++.|+++|++.+....+
T Consensus 204 aDl~~~--~~a~~~~~e-----l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 204 ADGDNK--TAARRAAAE-----YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred hcccch--hHHHHHHHH-----HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 998755 233333322 333443222110000 11223677788999999999998877
No 264
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.15 E-value=2.6e-10 Score=120.85 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=79.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------CccceeEEEEeEEee---------------
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--------------SAITKTCEMKTTVLK--------------- 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--------------~~~t~~~~~~~~~~~--------------- 66 (371)
....++|+|+|+.++|||||+++|+...-....... .+.|.......+.+.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 345689999999999999999999743321110000 123333222223331
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+++|||||+.| +..+.. .+...+|++|+|+|+..++.......++.+... . .|+++++||
T Consensus 96 ~~~~inliDtPGh~d-------F~~e~~----~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~---~--~p~i~~iNK 159 (843)
T PLN00116 96 NEYLINLIDSPGHVD-------FSSEVT----AALRITDGALVVVDCIEGVCVQTETVLRQALGE---R--IRPVLTVNK 159 (843)
T ss_pred CceEEEEECCCCHHH-------HHHHHH----HHHhhcCEEEEEEECCCCCcccHHHHHHHHHHC---C--CCEEEEEEC
Confidence 256789999999765 223333 334556999999999988887777777666543 2 399999999
Q ss_pred CCCC
Q 040649 147 GDDL 150 (371)
Q Consensus 147 ~D~~ 150 (371)
+|..
T Consensus 160 ~D~~ 163 (843)
T PLN00116 160 MDRC 163 (843)
T ss_pred Cccc
Confidence 9987
No 265
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.14 E-value=1.5e-10 Score=103.07 Aligned_cols=137 Identities=17% Similarity=0.175 Sum_probs=71.9
Q ss_pred EEEEEeCCCCCCC---CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH---HHHHHHHHHHhCCCCCCeEEEE
Q 040649 70 VVNVIDTPGLFDS---SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE---EAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 70 ~i~liDTPG~~~~---~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~---~~~l~~l~~~~~~~~~~~~ilv 143 (371)
...||||||.... +.+.. -|...+ +...+.+|+||+|.. +-+... ..++-...-++..+. |+|+|
T Consensus 117 ~~~liDTPGQIE~FtWSAsGs----IIte~l--ass~ptvv~YvvDt~-rs~~p~tFMSNMlYAcSilyktkl--p~ivv 187 (366)
T KOG1532|consen 117 DYVLIDTPGQIEAFTWSASGS----IITETL--ASSFPTVVVYVVDTP-RSTSPTTFMSNMLYACSILYKTKL--PFIVV 187 (366)
T ss_pred CEEEEcCCCceEEEEecCCcc----chHhhH--hhcCCeEEEEEecCC-cCCCchhHHHHHHHHHHHHHhccC--CeEEE
Confidence 5789999996532 22211 122222 234678999999976 222222 222222222333343 99999
Q ss_pred EeCCCCCCCchhhHHHHhcc----------cCCchHHHHHHhcCCceEeecC---cchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 144 FTGGDDLEDNEKTLEDYLGL----------ECPKPLKEILQLCDNRWVLFDN---KTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~----------~~~~~l~~~~~~~~~r~~~f~~---~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+||.|..+. .-..+++.+ ....++..+.....--+-.|-+ ...+|+.+|.|.++++..|...+.+
T Consensus 188 fNK~Dv~d~--~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdE 265 (366)
T KOG1532|consen 188 FNKTDVSDS--EFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDE 265 (366)
T ss_pred Eeccccccc--HHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHH
Confidence 999998766 322233221 0111222222111100011111 1235778899999999999998887
Q ss_pred cCCCCCCh
Q 040649 211 NGGQPYTN 218 (371)
Q Consensus 211 ~~~~~y~~ 218 (371)
+.. .|.+
T Consensus 266 y~~-~ykp 272 (366)
T KOG1532|consen 266 YEE-EYKP 272 (366)
T ss_pred HHH-Hhhh
Confidence 533 3443
No 266
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.13 E-value=2.6e-10 Score=104.86 Aligned_cols=87 Identities=18% Similarity=0.214 Sum_probs=59.3
Q ss_pred EEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc----------------EEEEEeCCCCCCCCcc
Q 040649 22 VVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ----------------VVNVIDTPGLFDSSAE 85 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~i~liDTPG~~~~~~~ 85 (371)
|++||.|++|||||+|+|+|.... ....+++|.........+++.+ .+.++||||+......
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~--~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE--AANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc--cccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998862 2233555555554444442221 4899999999865433
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
....+..+...+ ..+|++++|+|+.
T Consensus 79 ~~glg~~fL~~i----~~~D~li~VV~~f 103 (274)
T cd01900 79 GEGLGNKFLSHI----REVDAIAHVVRCF 103 (274)
T ss_pred hhHHHHHHHHHH----HhCCEEEEEEeCc
Confidence 334444454443 4569999999874
No 267
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.13 E-value=6.4e-10 Score=113.95 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=88.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh---CCCccccCCC-------------CCccceeEEEEeEEeeCC-cEEEEEeCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL---GRRAFKASAG-------------SSAITKTCEMKTTVLKDG-QVVNVIDTPG 78 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~-~~i~liDTPG 78 (371)
....++|+++|+.++|||||..+|+ |......... ..++|......+..| .+ ..+++|||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPG 85 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPG 85 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCC
Confidence 3455899999999999999998876 2221100011 026677677777777 64 9999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.|+ ..+..+.+.. +|++++|+|+..+........++.+... .+ |.++++||+|.+..
T Consensus 86 HVDF-------t~EV~rslrv----lDgavvVvdaveGV~~QTEtv~rqa~~~---~v--p~i~fiNKmDR~~a 143 (697)
T COG0480 86 HVDF-------TIEVERSLRV----LDGAVVVVDAVEGVEPQTETVWRQADKY---GV--PRILFVNKMDRLGA 143 (697)
T ss_pred cccc-------HHHHHHHHHh----hcceEEEEECCCCeeecHHHHHHHHhhc---CC--CeEEEEECcccccc
Confidence 9985 2334444443 4999999999988888888888777654 33 99999999998866
No 268
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.12 E-value=4.2e-10 Score=100.88 Aligned_cols=122 Identities=16% Similarity=0.190 Sum_probs=71.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|+.||||||+.+.|.+...+.. ...-+.|.......+.......+.+||.||..+..... +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~d-T~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRD-TLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGG-GGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchh-ccccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 589999999999999999997765432 23344566566555544355699999999987642210 00011223
Q ss_pred cCCceEEEEEEeCC-CCCCHHHHHH---HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 101 KDGIHAVLLVFSVR-SRFSQEEEAA---VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 101 ~~~~d~vl~v~d~~-~~~~~~~~~~---l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+++++|||+|+. ..+...-..+ +..+... .+.+ .+.+++.|+|.+.+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~-sp~~--~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQY-SPNI--KVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHH-STT---EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHh-CCCC--eEEEEEeecccCCH
Confidence 56779999999998 3333332222 3333333 3333 89999999998865
No 269
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.11 E-value=2.1e-10 Score=119.70 Aligned_cols=118 Identities=16% Similarity=0.228 Sum_probs=75.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC--------------ccccCCCCCccceeEEEEe----EEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR--------------AFKASAGSSAITKTCEMKT----TVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~--------------~~~~~~~~~~~t~~~~~~~----~~~~~~~~i~liDTPG~ 79 (371)
...+|+++|+.|+|||||++.|+... .+.......+.|....... +.+ .+..+++|||||+
T Consensus 18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCCc
Confidence 45799999999999999999986321 0000000122233222211 223 5678999999998
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
.+.. ... ..++..+|++|+|+|+..+....+...+..+... . .|.++|+||+|....
T Consensus 97 ~~f~-------~~~----~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~ 153 (720)
T TIGR00490 97 VDFG-------GDV----TRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLIN 153 (720)
T ss_pred cccH-------HHH----HHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhcccc
Confidence 7631 122 2344566999999999877766666665554332 2 277899999997643
No 270
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.10 E-value=5.6e-10 Score=106.00 Aligned_cols=89 Identities=18% Similarity=0.207 Sum_probs=60.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~~~ 83 (371)
.+|++||.|++|||||+|+|+|... .....+++|..+......+++. ..+.++||||+....
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~--~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA--EAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC--eecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 5899999999999999999999874 2223345555554433333221 258999999998754
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.........+...+ ..+|++++|+|+.
T Consensus 81 ~~g~glg~~fL~~i----~~aD~li~VVd~f 107 (364)
T PRK09601 81 SKGEGLGNQFLANI----REVDAIVHVVRCF 107 (364)
T ss_pred ChHHHHHHHHHHHH----HhCCEEEEEEeCC
Confidence 33334444454443 4569999999985
No 271
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=1e-08 Score=95.03 Aligned_cols=130 Identities=18% Similarity=0.308 Sum_probs=90.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee----CC-------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK----DG------------------------- 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~----~~------------------------- 68 (371)
..+-|+++|+.+.|||||||.|++.+.+....++.++|........... +|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred cCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 3467999999999999999999999886554555544433332211000 01
Q ss_pred ----------cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCC
Q 040649 69 ----------QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIF 137 (371)
Q Consensus 69 ----------~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~ 137 (371)
..++||||||+.+.....-...-.+...+......+|.|++++|+. -.++++...++..|+ |..
T Consensus 137 ~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLk---G~E-- 211 (532)
T KOG1954|consen 137 MCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALK---GHE-- 211 (532)
T ss_pred HHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhh---CCc--
Confidence 2489999999987543322333445666667778899999999987 446666666666665 333
Q ss_pred CeEEEEEeCCCCCCC
Q 040649 138 DYMIVVFTGGDDLED 152 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~ 152 (371)
+.+-||+||.|.++.
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred ceeEEEeccccccCH
Confidence 389999999998866
No 272
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=1.8e-09 Score=102.56 Aligned_cols=159 Identities=21% Similarity=0.241 Sum_probs=115.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccc-cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFK-ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.|+..|+--.|||||+.+++|...-. ......+.|.+..++.... .+..+.+||.||+.+ +...+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 57889999999999999999876421 1223457788888887777 555899999999764 3444444
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++|..++|+++++++.....+.+..|. +||.. +.++|+||+|..++ ..++..+. .++....
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLd-llgi~---~giivltk~D~~d~--~r~e~~i~--------~Il~~l~-- 133 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILD-LLGIK---NGIIVLTKADRVDE--ARIEQKIK--------QILADLS-- 133 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHH-hcCCC---ceEEEEeccccccH--HHHHHHHH--------HHHhhcc--
Confidence 566889999999998888888877776665 45654 88999999998866 44444433 3333222
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+.-.+...+|+.+++|+.+|.+.+.++.
T Consensus 134 -l~~~~i~~~s~~~g~GI~~Lk~~l~~L~ 161 (447)
T COG3276 134 -LANAKIFKTSAKTGRGIEELKNELIDLL 161 (447)
T ss_pred -cccccccccccccCCCHHHHHHHHHHhh
Confidence 2222334578889999999999999888
No 273
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.8e-08 Score=98.78 Aligned_cols=149 Identities=19% Similarity=0.264 Sum_probs=93.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCc----------------------------------------c-ceeE
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSA----------------------------------------I-TKTC 58 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~----------------------------------------~-t~~~ 58 (371)
.+|++.|++++||||++|+++-....+++..+.. . .-..
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 5899999999999999999998877666533210 0 0001
Q ss_pred EEEeEEeeCC------cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh
Q 040649 59 EMKTTVLKDG------QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF 132 (371)
Q Consensus 59 ~~~~~~~~~~------~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~ 132 (371)
....+.++++ ..+.++|.||++-.+. ....+......+|++|||+++.+-++..++.++....+.
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se--------~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~- 260 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE--------LTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE- 260 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCchh--------hhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence 1112223222 3688999999885321 222233334467999999999988888888887776654
Q ss_pred CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH----HHhcCCceEeecCc
Q 040649 133 GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI----LQLCDNRWVLFDNK 186 (371)
Q Consensus 133 ~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~----~~~~~~r~~~f~~~ 186 (371)
..++.|+.||||...+.+.-.++.+.+ +.++ .....+++|+++.+
T Consensus 261 ----KpniFIlnnkwDasase~ec~e~V~~Q-----i~eL~v~~~~eA~DrvfFVS~~ 309 (749)
T KOG0448|consen 261 ----KPNIFILNNKWDASASEPECKEDVLKQ-----IHELSVVTEKEAADRVFFVSAK 309 (749)
T ss_pred ----CCcEEEEechhhhhcccHHHHHHHHHH-----HHhcCcccHhhhcCeeEEEecc
Confidence 237788888999775533333443332 2211 12335778877644
No 274
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.07 E-value=1.8e-08 Score=90.50 Aligned_cols=109 Identities=18% Similarity=0.109 Sum_probs=67.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC-CccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR-RAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
..+...|+|+|++++|||||+|.|+|. ..|..+.....+|........... .+..+.++||||+++...........
T Consensus 4 ~~~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~ 83 (224)
T cd01851 4 GFPVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDAR 83 (224)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhH
Confidence 345578999999999999999999998 345544444555554444433331 35789999999999875543011111
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQ 129 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~ 129 (371)
+...... -++++||.++.. ....+...+..+.
T Consensus 84 ~~~l~~l---lss~~i~n~~~~--~~~~~~~~l~~~~ 115 (224)
T cd01851 84 LFALATL---LSSVLIYNSWET--ILGDDLAALMGLL 115 (224)
T ss_pred HHHHHHH---HhCEEEEeccCc--ccHHHHHHHHHHH
Confidence 2111111 238888888775 3444444444443
No 275
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.06 E-value=3.6e-09 Score=92.91 Aligned_cols=161 Identities=21% Similarity=0.159 Sum_probs=96.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+++|.+|+|||+|...+++...... . ..|.... ...... .....+.|+||+|..+. ...
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~-y---~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~-----------~~~ 67 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVED-Y---DPTIEDSYRKELTVDGEVCMLEILDTAGQEEF-----------SAM 67 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccc-c---CCCccccceEEEEECCEEEEEEEEcCCCcccC-----------hHH
Confidence 36899999999999999988877665332 1 1122111 112222 12346789999994332 222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+....|++++|++++++.+-.+ ..+...+...-+. ..-|+++|.||+|+......+.++ -+.+...
T Consensus 68 ~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~-~~~PivlVGNK~Dl~~~R~V~~ee---------g~~la~~ 137 (196)
T KOG0395|consen 68 RDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGR-DDVPIILVGNKCDLERERQVSEEE---------GKALARS 137 (196)
T ss_pred HHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCCEEEEEEcccchhccccCHHH---------HHHHHHh
Confidence 2344566799999999986544333 2333344332221 224999999999977532122222 2233444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++..++ ..||+...++++++..+...+..
T Consensus 138 ~~~~f~------E~Sak~~~~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 138 WGCAFI------ETSAKLNYNVDEVFYELVREIRL 166 (196)
T ss_pred cCCcEE------EeeccCCcCHHHHHHHHHHHHHh
Confidence 444433 35777778999999988876665
No 276
>PRK13768 GTPase; Provisional
Probab=99.06 E-value=1e-09 Score=100.43 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=74.1
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+.+|||||..+... ....+..+.+.+.... .+++++|+|+....+..+.....++..........|+++|+||+|.
T Consensus 98 ~~~~~d~~g~~~~~~-~~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFA-FRESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHh-hhHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 688999999754311 1223333444443221 7999999999865566665444443311100122499999999998
Q ss_pred CCCch-hhHHHHhcc------c----------CCchHHHHHHhcC--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 150 LEDNE-KTLEDYLGL------E----------CPKPLKEILQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 150 ~~~~~-~~l~~~l~~------~----------~~~~l~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..... .....++.. . ....+-..+...+ .++++ .|+.++.++++|++.+...+..
T Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~------iSa~~~~gl~~L~~~I~~~l~~ 248 (253)
T PRK13768 175 LSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIP------VSAKTGEGFDELYAAIQEVFCG 248 (253)
T ss_pred cCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEE------EECCCCcCHHHHHHHHHHHcCC
Confidence 86621 112222221 0 0000111222223 23333 4566789999999999988865
Q ss_pred cC
Q 040649 211 NG 212 (371)
Q Consensus 211 ~~ 212 (371)
.+
T Consensus 249 ~~ 250 (253)
T PRK13768 249 GE 250 (253)
T ss_pred CC
Confidence 44
No 277
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=7.1e-09 Score=84.37 Aligned_cols=154 Identities=19% Similarity=0.191 Sum_probs=94.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE--eEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK--TTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~--~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+++++|+.|+|||.|+..+.....-+. .+.|....+. .+.. .....+.||||.|. +.+...
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDd----ssHTiGveFgSrIinVGgK~vKLQIWDTAGQ-----------ErFRSV 74 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDD----SSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQ-----------ERFRSV 74 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhccc----ccceeeeeecceeeeecCcEEEEEEeecccH-----------HHHHHH
Confidence 5789999999999999998875554222 1223323332 2222 12237889999993 335666
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.++-+.++|.|++++-+-.. ..++.-++.+.+..+ .++++.||.|+-.....+..+. ..+.
T Consensus 75 tRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nI--vviL~GnKkDL~~~R~VtflEA---------s~Fa-- 141 (214)
T KOG0086|consen 75 TRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNI--VVILCGNKKDLDPEREVTFLEA---------SRFA-- 141 (214)
T ss_pred HHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcE--EEEEeCChhhcChhhhhhHHHH---------Hhhh--
Confidence 7778899999999999985544332 445555666555544 6778889999665432222211 1121
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
...-..| ...|+.+++++.+.+-...
T Consensus 142 -qEnel~f---lETSa~TGeNVEEaFl~c~ 167 (214)
T KOG0086|consen 142 -QENELMF---LETSALTGENVEEAFLKCA 167 (214)
T ss_pred -cccceee---eeecccccccHHHHHHHHH
Confidence 1111122 2367888999988665443
No 278
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.05 E-value=1.5e-09 Score=105.90 Aligned_cols=175 Identities=17% Similarity=0.207 Sum_probs=111.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC-CCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAG-SSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.....+|+|+|.-|+||||||-+|+....++.... ...++.. .-..+......|+||+.-.+. .
T Consensus 6 t~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IP----advtPe~vpt~ivD~ss~~~~-----------~ 70 (625)
T KOG1707|consen 6 TLKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIP----ADVTPENVPTSIVDTSSDSDD-----------R 70 (625)
T ss_pred CccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccC----CccCcCcCceEEEecccccch-----------h
Confidence 44568999999999999999999998887554322 1222222 111224456889999853321 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.++......+|++++|...+++ +......+|-.++..+|.....|+|+|.||+|.......+++..+ -.+
T Consensus 71 ~~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~--------~pi 142 (625)
T KOG1707|consen 71 LCLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNT--------LPI 142 (625)
T ss_pred HHHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHH--------HHH
Confidence 1222233455999999977743 444457788899999988888899999999998755322223211 111
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCC
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYT 217 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~ 217 (371)
+. .+-.+......||++..++.+++-.-...+-..-+..|.
T Consensus 143 m~----~f~EiEtciecSA~~~~n~~e~fYyaqKaVihPt~PLyd 183 (625)
T KOG1707|consen 143 MI----AFAEIETCIECSALTLANVSELFYYAQKAVIHPTSPLYD 183 (625)
T ss_pred HH----HhHHHHHHHhhhhhhhhhhHhhhhhhhheeeccCccccc
Confidence 11 111233334578888899999998877666554444444
No 279
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.03 E-value=1.1e-09 Score=99.92 Aligned_cols=162 Identities=17% Similarity=0.159 Sum_probs=103.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+.+.|.|||-++||||||++.|++....+... -..|.++..+....+.|+.+.+.||-||... .+. .....+...+
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~p~dr--LFATLDpT~h~a~Lpsg~~vlltDTvGFisd-LP~-~LvaAF~ATL 252 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALYPNDR--LFATLDPTLHSAHLPSGNFVLLTDTVGFISD-LPI-QLVAAFQATL 252 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcCccch--hheeccchhhhccCCCCcEEEEeechhhhhh-CcH-HHHHHHHHHH
Confidence 34789999999999999999999777644432 2335555566666778999999999999852 111 1112222222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCC---CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKK---IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~---~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
. -...+|++|.|+|+++|.-...... +..|.. +|-. ....++-|=||+|.... +...
T Consensus 253 e-eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~-igv~~~pkl~~mieVdnkiD~e~~-------~~e~---------- 313 (410)
T KOG0410|consen 253 E-EVAEADLLLHVVDISHPNAEEQRETVLHVLNQ-IGVPSEPKLQNMIEVDNKIDYEED-------EVEE---------- 313 (410)
T ss_pred H-HHhhcceEEEEeecCCccHHHHHHHHHHHHHh-cCCCcHHHHhHHHhhccccccccc-------cCcc----------
Confidence 1 2335699999999998876666544 444444 4432 12356667777775433 1110
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.-++....|++++.|+++|++.+...+..
T Consensus 314 --------E~n~~v~isaltgdgl~el~~a~~~kv~~ 342 (410)
T KOG0410|consen 314 --------EKNLDVGISALTGDGLEELLKAEETKVAS 342 (410)
T ss_pred --------ccCCccccccccCccHHHHHHHHHHHhhh
Confidence 01123447888999999999998876554
No 280
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.03 E-value=5.4e-09 Score=86.06 Aligned_cols=159 Identities=16% Similarity=0.108 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.++.|+|.+-+|||||+...+....+. .+.+.+..+.-...+...+| ..+.+|||.|-- .+....
T Consensus 9 frlivigdstvgkssll~~ft~gkfae--lsdptvgvdffarlie~~pg~riklqlwdtagqe-----------rfrsit 75 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAE--LSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQE-----------RFRSIT 75 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCcccc--cCCCccchHHHHHHHhcCCCcEEEEEEeeccchH-----------HHHHHH
Confidence 689999999999999999999766532 22222211111111222233 378899999932 244445
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.+.-++++|+|++++-+-+ -..++.......+.+...-..+|.+|+|+......+.+ ....+...|
T Consensus 76 ksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~E---------EaEklAa~h 146 (213)
T KOG0091|consen 76 KSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAE---------EAEKLAASH 146 (213)
T ss_pred HHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHH---------HHHHHHHhc
Confidence 56677778999999998654433 24455554444553333345688899997744222222 134566667
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+-.++. +|++++.++++-++.+..
T Consensus 147 gM~FVE------TSak~g~NVeEAF~mlaq 170 (213)
T KOG0091|consen 147 GMAFVE------TSAKNGCNVEEAFDMLAQ 170 (213)
T ss_pred CceEEE------ecccCCCcHHHHHHHHHH
Confidence 765554 677788899888877654
No 281
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.02 E-value=1.3e-09 Score=114.07 Aligned_cols=118 Identities=16% Similarity=0.224 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------CccceeEEEEeEEe---eCCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--------------SAITKTCEMKTTVL---KDGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--------------~~~t~~~~~~~~~~---~~~~~i~liDTPG~~ 80 (371)
..++|+++|+.++|||||+.+|+...-....... .+.|.......+.| ..+..+++|||||+.
T Consensus 19 ~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~~ 98 (731)
T PRK07560 19 QIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHV 98 (731)
T ss_pred cccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCcc
Confidence 4578999999999999999999743211000000 12232222222222 135678999999988
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+. ..+. ..+...+|++|+|+|+..+........+..+... + .|.|+++||+|...
T Consensus 99 df-------~~~~----~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~-~----~~~iv~iNK~D~~~ 153 (731)
T PRK07560 99 DF-------GGDV----TRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE-R----VKPVLFINKVDRLI 153 (731)
T ss_pred Ch-------HHHH----HHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc-C----CCeEEEEECchhhc
Confidence 73 2223 3334556999999999877777777777665432 2 27789999999763
No 282
>PRK12740 elongation factor G; Reviewed
Probab=99.02 E-value=2.7e-09 Score=111.07 Aligned_cols=111 Identities=21% Similarity=0.263 Sum_probs=73.6
Q ss_pred EcCCCCcHHHHHHHHhCCCccccC---C-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH
Q 040649 25 LGRTGNGKSATGNSILGRRAFKAS---A-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 25 vG~~GsGKSTlin~L~g~~~~~~~---~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~ 88 (371)
+|+.|+|||||++.|+...-.... . ...+.|.......+.+ .+..+++|||||..+.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~~------ 73 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVDF------ 73 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHHH------
Confidence 699999999999999533211000 0 0124455555555666 7889999999997541
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 89 VSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 89 ~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...... ++..+|++++|+|++.+........+..+... . .|+++|+||+|....
T Consensus 74 -~~~~~~----~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~---~--~p~iiv~NK~D~~~~ 127 (668)
T PRK12740 74 -TGEVER----ALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY---G--VPRIIFVNKMDRAGA 127 (668)
T ss_pred -HHHHHH----HHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCC
Confidence 122222 33456999999999877776666666555432 2 389999999997754
No 283
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.01 E-value=1.3e-08 Score=98.32 Aligned_cols=143 Identities=18% Similarity=0.190 Sum_probs=97.7
Q ss_pred CCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--------------------------------
Q 040649 4 RVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-------------------------------- 51 (371)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------------------------------- 51 (371)
|.|+..|.....- ++|+|||.-++||||.+.+|+....|+.+.+.
T Consensus 296 s~YD~sYnt~DhL---PRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTK 372 (980)
T KOG0447|consen 296 SDYDASYNTQDHL---PRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTK 372 (980)
T ss_pred hcccccccccccC---ceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccc
Confidence 5567777666665 79999999999999999999988777654321
Q ss_pred --------------------CccceeEEEEeEEe--eCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCCceEE
Q 040649 52 --------------------SAITKTCEMKTTVL--KDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDGIHAV 107 (371)
Q Consensus 52 --------------------~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~~d~v 107 (371)
.+.|.......... ++-...++||.||+..+-. ...+....|......+..+|++|
T Consensus 373 E~DLq~LR~e~E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAI 452 (980)
T KOG0447|consen 373 EEDLAALRHEIELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAI 452 (980)
T ss_pred hhHHHHHHHHHHHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeE
Confidence 14555555544444 1224788999999986532 22345566777777788899999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 108 LLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 108 l~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|+|+.-+ .. +.++..+.-|...+. +..+.+|+|+||+|+.+.
T Consensus 453 ILCIQDG-SV-DAERSnVTDLVsq~D-P~GrRTIfVLTKVDlAEk 494 (980)
T KOG0447|consen 453 ILCIQDG-SV-DAERSIVTDLVSQMD-PHGRRTIFVLTKVDLAEK 494 (980)
T ss_pred EEEeccC-Cc-chhhhhHHHHHHhcC-CCCCeeEEEEeecchhhh
Confidence 9999654 23 334444444444333 234689999999997754
No 284
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=2.2e-09 Score=102.43 Aligned_cols=167 Identities=17% Similarity=0.239 Sum_probs=109.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-------------CCCCccceeEEEEeEEee----CCcEEEEEeCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-------------AGSSAITKTCEMKTTVLK----DGQVVNVIDTPGL 79 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-------------~~~~~~t~~~~~~~~~~~----~~~~i~liDTPG~ 79 (371)
....++.++.+-..|||||...|+...-.-+. ..-.++|...+.....+. ....+++|||||.
T Consensus 7 ~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGH 86 (603)
T COG0481 7 KNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGH 86 (603)
T ss_pred hhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCCc
Confidence 34578899999999999999998633211000 011477777776666552 2247999999999
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHH
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLED 159 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~ 159 (371)
.|++.. ..+.+..| .+.|+|+|++.+..... +..+...+.... -+|.|+||+|+...+.+....
T Consensus 87 VDFsYE-------VSRSLAAC----EGalLvVDAsQGveAQT---lAN~YlAle~~L--eIiPViNKIDLP~Adpervk~ 150 (603)
T COG0481 87 VDFSYE-------VSRSLAAC----EGALLVVDASQGVEAQT---LANVYLALENNL--EIIPVLNKIDLPAADPERVKQ 150 (603)
T ss_pred cceEEE-------ehhhHhhC----CCcEEEEECccchHHHH---HHHHHHHHHcCc--EEEEeeecccCCCCCHHHHHH
Confidence 986322 33333333 88999999997665443 334433344443 899999999987653333322
Q ss_pred HhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 160 YLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 160 ~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
. +..++..-. +.....||++|.|++++++.|...++...|
T Consensus 151 e--------Ie~~iGid~------~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 151 E--------IEDIIGIDA------SDAVLVSAKTGIGIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred H--------HHHHhCCCc------chheeEecccCCCHHHHHHHHHhhCCCCCC
Confidence 2 344443211 222346899999999999999998887655
No 285
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=3e-09 Score=89.87 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=103.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.....+|+++|--||||||++..+--.+...+ .+|.-+....+.+ .+..+.++|.-|... +..
T Consensus 14 ~~~e~~IlmlGLD~AGKTTILykLk~~E~vtt-----vPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R~ 76 (181)
T KOG0070|consen 14 GKKEMRILMVGLDAAGKTTILYKLKLGEIVTT-----VPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LRP 76 (181)
T ss_pred CcceEEEEEEeccCCCceeeeEeeccCCcccC-----CCccccceeEEEE-cceEEEEEecCCCcc-----------ccc
Confidence 44568999999999999999988765554333 2344455555566 678899999998643 344
Q ss_pred HHhhhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
....++...+++|||+|.+++ +...- +.|...+... ...|++++.||.|..+. -+..+.-.. -.
T Consensus 77 lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak----~eL~~~l~~~~l~~~~llv~aNKqD~~~a--ls~~ei~~~------L~ 144 (181)
T KOG0070|consen 77 LWKHYFQNTQGLIFVVDSSDRERIEEAK----EELHRMLAEPELRNAPLLVFANKQDLPGA--LSAAEITNK------LG 144 (181)
T ss_pred chhhhccCCcEEEEEEeCCcHHHHHHHH----HHHHHHHcCcccCCceEEEEechhhcccc--CCHHHHHhH------hh
Confidence 456677888999999999843 33322 2233322222 23599999999998766 343332221 11
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+-.. .++.+.+.. ..|.+|.|+.+-++++...+..
T Consensus 145 l~~l-~~~~w~iq~---~~a~~G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 145 LHSL-RSRNWHIQS---TCAISGEGLYEGLDWLSNNLKK 179 (181)
T ss_pred hhcc-CCCCcEEee---ccccccccHHHHHHHHHHHHhc
Confidence 1122 224444443 3455689999999999877654
No 286
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.98 E-value=7.9e-09 Score=98.44 Aligned_cols=171 Identities=17% Similarity=0.266 Sum_probs=109.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCC-------------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASA-------------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~-------------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+-.+|+++-+...|||||+..|+...- |.... .-.++|.-.....+.| ++..++|+||||..|+.
T Consensus 4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFG 82 (603)
T COG1217 4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFG 82 (603)
T ss_pred ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCcc
Confidence 347899999999999999999985431 21110 0136666666666777 88999999999999875
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL 163 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~ 163 (371)
+. ..+.+.+ +|++|+++|+.++.-+..+..++...+. .. +.|+|+||+|.....+..+-+.
T Consensus 83 GE-------VERvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~---gL--~PIVVvNKiDrp~Arp~~Vvd~--- 143 (603)
T COG1217 83 GE-------VERVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL---GL--KPIVVINKIDRPDARPDEVVDE--- 143 (603)
T ss_pred ch-------hhhhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc---CC--CcEEEEeCCCCCCCCHHHHHHH---
Confidence 53 3344443 3999999999977667776666554442 22 7788999999886644332211
Q ss_pred cCCchHHHHHHh-------cCCceEeecCcch----hhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 164 ECPKPLKEILQL-------CDNRWVLFDNKTK----YEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 164 ~~~~~l~~~~~~-------~~~r~~~f~~~~~----~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+-.++-. +.-++++-+.... +.......+..|++.|.+.++...+
T Consensus 144 -----vfDLf~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~ 199 (603)
T COG1217 144 -----VFDLFVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKG 199 (603)
T ss_pred -----HHHHHHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCCC
Confidence 1222222 2223333222211 1222346688999999988886544
No 287
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.94 E-value=2.2e-09 Score=91.14 Aligned_cols=56 Identities=25% Similarity=0.314 Sum_probs=40.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
..+|+++|.||+|||||+|+|+|......+.. +++|....... .+..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~-~g~T~~~~~~~----~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPI-PGETKVWQYIT----LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCC-CCeeEeEEEEE----cCCCEEEEECcCC
Confidence 46889999999999999999999876544333 33444433221 3345889999995
No 288
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.93 E-value=4e-09 Score=85.35 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=92.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
...+.++|-.+||||||+|.++....... -..|.....+.+.- ....+.++|.||-.. +.....
T Consensus 20 emel~lvGLq~sGKtt~Vn~ia~g~~~ed----miptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frsmWe 83 (186)
T KOG0075|consen 20 EMELSLVGLQNSGKTTLVNVIARGQYLED----MIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRSMWE 83 (186)
T ss_pred eeeEEEEeeccCCcceEEEEEeeccchhh----hcccccceeEEecc-CceEEEEEecCCCcc-----------HHHHHH
Confidence 46789999999999999999874332111 12233333433332 445889999999553 344455
Q ss_pred hhcCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 99 MAKDGIHAVLLVFSVRSR--FSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~--~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.+..++++++||+|+.++ ++.. + ..|+.++..+ ...|++++.||.|..+. -+-.+.+.+- .+..+-
T Consensus 84 rycR~v~aivY~VDaad~~k~~~s-r---~EL~~LL~k~~l~gip~LVLGnK~d~~~A--L~~~~li~rm---gL~sit- 153 (186)
T KOG0075|consen 84 RYCRGVSAIVYVVDAADPDKLEAS-R---SELHDLLDKPSLTGIPLLVLGNKIDLPGA--LSKIALIERM---GLSSIT- 153 (186)
T ss_pred HHhhcCcEEEEEeecCCcccchhh-H---HHHHHHhcchhhcCCcEEEecccccCccc--ccHHHHHHHh---Cccccc-
Confidence 567889999999999843 2222 2 2233333222 22499999999998765 2222222110 000010
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.-.++-|. .|++...+++.+++++.+.-
T Consensus 154 --dREvcC~s----iScke~~Nid~~~~Wli~hs 181 (186)
T KOG0075|consen 154 --DREVCCFS----ISCKEKVNIDITLDWLIEHS 181 (186)
T ss_pred --cceEEEEE----EEEcCCccHHHHHHHHHHHh
Confidence 11223332 45666688999888876543
No 289
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.93 E-value=1.5e-08 Score=93.65 Aligned_cols=156 Identities=15% Similarity=0.160 Sum_probs=101.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccc-----------cC-CCC-------------------CccceeEEEEeEEe
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFK-----------AS-AGS-------------------SAITKTCEMKTTVL 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~-----------~~-~~~-------------------~~~t~~~~~~~~~~ 65 (371)
....+++.+|...-||||||-.|+-..... +. ... .++|.+..+..+..
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred ccceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc
Confidence 345799999999999999998887432100 00 000 27777777665555
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
..+.+.|.||||.- ...+.+ .....-+|+.|+++|+..++....+ .-..+..++|-+ ++++.+|
T Consensus 84 -~KRkFIiADTPGHe-------QYTRNM----aTGASTadlAIlLVDAR~Gvl~QTr-RHs~I~sLLGIr---hvvvAVN 147 (431)
T COG2895 84 -EKRKFIIADTPGHE-------QYTRNM----ATGASTADLAILLVDARKGVLEQTR-RHSFIASLLGIR---HVVVAVN 147 (431)
T ss_pred -ccceEEEecCCcHH-------HHhhhh----hcccccccEEEEEEecchhhHHHhH-HHHHHHHHhCCc---EEEEEEe
Confidence 88999999999943 222222 2223456999999999866655443 334666777765 9999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQ 196 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~ 196 (371)
|+|+++-+...++..... ...+....+.....| .+.||..|.+
T Consensus 148 KmDLvdy~e~~F~~I~~d-----y~~fa~~L~~~~~~~---IPiSAl~GDN 190 (431)
T COG2895 148 KMDLVDYSEEVFEAIVAD-----YLAFAAQLGLKDVRF---IPISALLGDN 190 (431)
T ss_pred eecccccCHHHHHHHHHH-----HHHHHHHcCCCcceE---EechhccCCc
Confidence 999997766677766665 555666666443322 2245555544
No 290
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.92 E-value=7.1e-09 Score=94.53 Aligned_cols=170 Identities=17% Similarity=0.207 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCcccee-------------EEE-------EeEEe-----eCCcE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKT-------------CEM-------KTTVL-----KDGQV 70 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~-------------~~~-------~~~~~-----~~~~~ 70 (371)
.+..+|+++|+...|||||..+|+|.....-. ....+.|.. |.. ..+.. .--+.
T Consensus 8 Qp~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~ 87 (415)
T COG5257 8 QPEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRR 87 (415)
T ss_pred CcceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEE
Confidence 46689999999999999999999996431100 000000100 000 00000 01146
Q ss_pred EEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 71 VNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 71 i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
+.|+|.||.. -+...++.-.. --|+.|+|+.++.++...+ .+-|- ..+.+|- +++|+|-||+|+
T Consensus 88 VSfVDaPGHe-------~LMATMLsGAA----lMDgAlLvIaANEpcPQPQT~EHl~-AleIigi---k~iiIvQNKIDl 152 (415)
T COG5257 88 VSFVDAPGHE-------TLMATMLSGAA----LMDGALLVIAANEPCPQPQTREHLM-ALEIIGI---KNIIIVQNKIDL 152 (415)
T ss_pred EEEeeCCchH-------HHHHHHhcchh----hhcceEEEEecCCCCCCCchHHHHH-HHhhhcc---ceEEEEecccce
Confidence 8999999942 22222322222 2399999999996554433 22222 2334454 499999999998
Q ss_pred CCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 150 LEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+.. +..++.|-. ++.+++ +.+..-.+..+.||..+.+++.|++.|.+.++..
T Consensus 153 V~~-E~AlE~y~q------Ik~Fvk---Gt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP 204 (415)
T COG5257 153 VSR-ERALENYEQ------IKEFVK---GTVAENAPIIPISAQHKANIDALIEAIEKYIPTP 204 (415)
T ss_pred ecH-HHHHHHHHH------HHHHhc---ccccCCCceeeehhhhccCHHHHHHHHHHhCCCC
Confidence 865 134444433 454543 2222222334579999999999999999988754
No 291
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.2e-08 Score=92.91 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=62.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------C-------cEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------G-------QVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------~-------~~i~liDTPG~~~~ 82 (371)
.++++||.|++|||||+|+|+.... ....++.+|..+.......++ + -.+.++|.+|+...
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a--~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGA--EIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCc--cccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 6899999999999999999998774 334455556554443332211 1 25789999999876
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
....+.++..++.-++. +|+++.|++..
T Consensus 81 As~GeGLGNkFL~~IRe----vdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIRE----VDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhh----cCeEEEEEEec
Confidence 55555566666666554 49999999875
No 292
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=7.9e-09 Score=102.99 Aligned_cols=172 Identities=20% Similarity=0.200 Sum_probs=107.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~ 81 (371)
.+.++++|+..+|||-|+..|-|.++. ....+++|.......++.. .-..+.+|||||.-.
T Consensus 475 SPIcCilGHVDTGKTKlld~ir~tNVq--egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 475 SPICCILGHVDTGKTKLLDKIRGTNVQ--EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CceEEEeecccccchHHHHHhhccccc--cccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 468999999999999999999998773 2334454433222111110 123688999999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC----chhhH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED----NEKTL 157 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~----~~~~l 157 (371)
+ ...-.....-+|.+|+|+|+-+++.+.....+.+|+.. . .|+||.+||+|.+.+ ....+
T Consensus 553 F-----------tnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~r---k--tpFivALNKiDRLYgwk~~p~~~i 616 (1064)
T KOG1144|consen 553 F-----------TNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMR---K--TPFIVALNKIDRLYGWKSCPNAPI 616 (1064)
T ss_pred h-----------hhhhhccccccceEEEEeehhccCCcchhHHHHHHHhc---C--CCeEEeehhhhhhcccccCCCchH
Confidence 2 22222233446999999999999999999999988864 2 399999999998732 11222
Q ss_pred HHHhcc-------cCCchHHHHHHhc---C-CceEeecCc--------chhhHhhHHhHHHHHHHHHHHH
Q 040649 158 EDYLGL-------ECPKPLKEILQLC---D-NRWVLFDNK--------TKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 158 ~~~l~~-------~~~~~l~~~~~~~---~-~r~~~f~~~--------~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+.+.. .....+..++-.+ | +--.+|.|. .++||..|.||.+|+-+|..+.
T Consensus 617 ~~~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144|consen 617 VEALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHH
Confidence 222221 1111233332222 1 112223332 4678889999999999876543
No 293
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.90 E-value=1.1e-09 Score=92.34 Aligned_cols=62 Identities=34% Similarity=0.396 Sum_probs=36.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCccc-eeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAIT-KTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~t-~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+++|+|++|+|||||+|+|++......+. ..+..| +.... +.+ .....|||||||.+...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l--~~l--~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHREL--FPL--PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEE--EEE--TTSEEEECSHHHHT--G
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeE--Eec--CCCcEEEECCCCCcccc
Confidence 3789999999999999999999986544321 122223 22332 222 23467999999876543
No 294
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=4.8e-08 Score=78.51 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=100.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+.+|-.++||||++-.|.-.... . ...|+.+....+.+ .+..++++|.-|-. .|..++
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~-~----~ipTvGFnvetVty-kN~kfNvwdvGGqd-----------~iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQD-----------KIRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCc-c----cccccceeEEEEEe-eeeEEeeeeccCch-----------hhhHHH
Confidence 4589999999999999999887633221 1 12233344555556 67789999998843 377788
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCC--CCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKI--FDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~--~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~ 174 (371)
..++++..++|||+|..++ ... .+.-..|...++.+- ..++++..||-|..... +..+.+++.- .
T Consensus 79 rhYy~gtqglIFV~Dsa~~-dr~-eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leL------e---- 146 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR-DRI-EEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLEL------E---- 146 (180)
T ss_pred HhhccCCceEEEEEeccch-hhH-HHHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcc------c----
Confidence 8899999999999998744 222 223344555555432 23788889999987551 2344444431 1
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...++.+.+.+ .++.++.++.+=+.++.+..
T Consensus 147 ~~r~~~W~vqp---~~a~~gdgL~eglswlsnn~ 177 (180)
T KOG0071|consen 147 RIRDRNWYVQP---SCALSGDGLKEGLSWLSNNL 177 (180)
T ss_pred cccCCccEeec---cccccchhHHHHHHHHHhhc
Confidence 12344443333 34556777777777765543
No 295
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.86 E-value=2.4e-08 Score=106.29 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=72.1
Q ss_pred cHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC-----------------cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 31 GKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG-----------------QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 31 GKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
+||||+.+|.+..+. ..-.+++|.....+.+.+... ..+.||||||..+.
T Consensus 473 ~KTtLLD~iR~t~v~--~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F----------- 539 (1049)
T PRK14845 473 HNTTLLDKIRKTRVA--KKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAF----------- 539 (1049)
T ss_pred ccccHHHHHhCCCcc--cccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHH-----------
Confidence 399999999999883 334567776655544443111 13899999995431
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
..........+|++++|+|+++++.......+..+... . .|+++|+||+|...
T Consensus 540 ~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~---~--iPiIVViNKiDL~~ 592 (1049)
T PRK14845 540 TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY---K--TPFVVAANKIDLIP 592 (1049)
T ss_pred HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc---C--CCEEEEEECCCCcc
Confidence 11122345668999999999977888877777776653 2 39999999999863
No 296
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.85 E-value=1.1e-07 Score=89.31 Aligned_cols=25 Identities=24% Similarity=0.260 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.....|+|+|++|+|||||++.+.+
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999765
No 297
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.85 E-value=6.5e-09 Score=89.44 Aligned_cols=57 Identities=32% Similarity=0.412 Sum_probs=41.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
...+++|+|.+|+|||||+|+|+|......+.. +++|...+... + +..+.++||||+
T Consensus 116 ~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~-pg~T~~~~~~~--~--~~~~~l~DtPGi 172 (172)
T cd04178 116 TSITVGVVGFPNVGKSSLINSLKRSRACNVGAT-PGVTKSMQEVH--L--DKKVKLLDSPGI 172 (172)
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCcccceecCC-CCeEcceEEEE--e--CCCEEEEECcCC
Confidence 347999999999999999999999887555333 44554433322 2 346889999995
No 298
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.83 E-value=1.9e-07 Score=90.76 Aligned_cols=122 Identities=17% Similarity=0.227 Sum_probs=72.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh------CCCccccCCCC-C----------ccceeEEEEeEE--e--------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL------GRRAFKASAGS-S----------AITKTCEMKTTV--L-------------- 65 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~~~~-~----------~~t~~~~~~~~~--~-------------- 65 (371)
...|+++|++|+||||++..|+ |..+.-....+ . ..-....++... .
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~ 179 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFK 179 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999886 44321110000 0 000000011000 0
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
..+..+.||||||.... ......++..... ...||.+++|+|+..+ .........+.+.+ .+.-+|+|
T Consensus 180 ~~~~DvViIDTaGr~~~---d~~lm~El~~i~~--~~~p~e~lLVlda~~G--q~a~~~a~~F~~~~-----~~~g~IlT 247 (429)
T TIGR01425 180 KENFDIIIVDTSGRHKQ---EDSLFEEMLQVAE--AIQPDNIIFVMDGSIG--QAAEAQAKAFKDSV-----DVGSVIIT 247 (429)
T ss_pred hCCCCEEEEECCCCCcc---hHHHHHHHHHHhh--hcCCcEEEEEeccccC--hhHHHHHHHHHhcc-----CCcEEEEE
Confidence 02568899999997653 3445566666543 2367899999998733 22333444444433 37889999
Q ss_pred CCCCCCC
Q 040649 146 GGDDLED 152 (371)
Q Consensus 146 k~D~~~~ 152 (371)
|.|....
T Consensus 248 KlD~~ar 254 (429)
T TIGR01425 248 KLDGHAK 254 (429)
T ss_pred CccCCCC
Confidence 9997643
No 299
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=5.4e-08 Score=95.29 Aligned_cols=142 Identities=19% Similarity=0.253 Sum_probs=90.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh---CCCc-----------cccCC---------------CCCccceeEEEEeEEe
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSIL---GRRA-----------FKASA---------------GSSAITKTCEMKTTVL 65 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~---g~~~-----------~~~~~---------------~~~~~t~~~~~~~~~~ 65 (371)
...+..+++++|+..+|||||+-.|+ |... ...+. ...++|.+.....+..
T Consensus 173 ~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes 252 (603)
T KOG0458|consen 173 DPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFES 252 (603)
T ss_pred CCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEec
Confidence 34467899999999999999998765 3211 00000 0125665555544543
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC-----CCC--HHHHHHHHHHHHHhCCCCCC
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS-----RFS--QEEEAAVHRLQTLFGKKIFD 138 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~-----~~~--~~~~~~l~~l~~~~~~~~~~ 138 (371)
....++|+|+||+.|+-. -+......+|+.++|+|++. +|. +..++....+ ..+|. .
T Consensus 253 -~~~~~tliDaPGhkdFi~-----------nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~ll-r~Lgi---~ 316 (603)
T KOG0458|consen 253 -KSKIVTLIDAPGHKDFIP-----------NMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLL-RSLGI---S 316 (603)
T ss_pred -CceeEEEecCCCccccch-----------hhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHH-HHcCc---c
Confidence 677899999999777421 11223345699999999872 222 2224444344 44563 4
Q ss_pred eEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH-HhcC
Q 040649 139 YMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL-QLCD 177 (371)
Q Consensus 139 ~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~-~~~~ 177 (371)
.+||++||+|.++-+...+++.... +..++ +.||
T Consensus 317 qlivaiNKmD~V~Wsq~RF~eIk~~-----l~~fL~~~~g 351 (603)
T KOG0458|consen 317 QLIVAINKMDLVSWSQDRFEEIKNK-----LSSFLKESCG 351 (603)
T ss_pred eEEEEeecccccCccHHHHHHHHHH-----HHHHHHHhcC
Confidence 9999999999997766667766665 67777 6666
No 300
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.81 E-value=1.2e-08 Score=84.89 Aligned_cols=58 Identities=29% Similarity=0.447 Sum_probs=40.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+++++|.+|+|||||+|+|+|...+... ...+.|.... .+.. + ..++|+||||+..
T Consensus 83 ~~~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~~--~~~~-~-~~~~i~DtpG~~~ 140 (141)
T cd01857 83 NATIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHFQ--TIFL-T-PTITLCDCPGLVF 140 (141)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccceE--EEEe-C-CCEEEEECCCcCC
Confidence 348999999999999999999998765322 2233343322 2333 2 3689999999863
No 301
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.81 E-value=3.4e-08 Score=88.61 Aligned_cols=128 Identities=17% Similarity=0.200 Sum_probs=80.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCcccc-CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKA-SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKE 92 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~e 92 (371)
....+.++++|.+++|||||+|.++......- ..+..+.|...... .-+..++++|.||++..+...+ .-+..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f----~v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHF----HVGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeee----eccceEEEEecCCcccccCCccCcchHhH
Confidence 34457999999999999999999987654222 11123333332221 2567899999999654322111 11111
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+...........-.+++.+|++.++...|...+.++.+. . .|+.+|+||||....
T Consensus 209 ~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~---~--VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGEN---N--VPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhc---C--CCeEEeeehhhhhhh
Confidence 222222222233456677788878888888888887754 2 399999999997643
No 302
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=5.5e-08 Score=94.47 Aligned_cols=132 Identities=20% Similarity=0.182 Sum_probs=84.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+|+..|+||||+|+||||||.+|...-.-... ...+++|. .....+.++++.+|. | ...+.
T Consensus 66 ~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTv-------vsgK~RRiTflEcp~--D--------l~~mi 128 (1077)
T COG5192 66 LPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITV-------VSGKTRRITFLECPS--D--------LHQMI 128 (1077)
T ss_pred CCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEE-------eecceeEEEEEeChH--H--------HHHHH
Confidence 345567789999999999999999854321111 11233332 122456889999994 2 12234
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
..... +|+||+.+|++.+|..+...+|..+... |- ..++-|+||.|+.... .++.....+....++.++.
T Consensus 129 DvaKI----aDLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 129 DVAKI----ADLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred hHHHh----hheeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence 44333 3999999999988888888888777654 32 3788999999988552 4555444432233444443
No 303
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=7.2e-08 Score=88.75 Aligned_cols=165 Identities=18% Similarity=0.229 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC--C-ccccCC--CCCccceeEEEEeEEeeC--------CcEEEEEeCCCCCCCCcc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR--R-AFKASA--GSSAITKTCEMKTTVLKD--------GQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~--~-~~~~~~--~~~~~t~~~~~~~~~~~~--------~~~i~liDTPG~~~~~~~ 85 (371)
..+++++|+..||||||.++|.-. . .|+... ...+.|.+..+....... .-.+++||.||...
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas---- 82 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS---- 82 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH----
Confidence 379999999999999999998632 2 222211 113344433333322211 23579999999643
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc--hhhHHHHhcc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN--EKTLEDYLGL 163 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~--~~~l~~~l~~ 163 (371)
+.+.+.....-+|..++|+|+..+......+.+-. |....+..++|+||+|.+.+. ...++....+
T Consensus 83 -------LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLii-----g~~~c~klvvvinkid~lpE~qr~ski~k~~kk 150 (522)
T KOG0461|consen 83 -------LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLII-----GELLCKKLVVVINKIDVLPENQRASKIEKSAKK 150 (522)
T ss_pred -------HHHHHHhhhheeeeeeEEEehhcccccccchhhhh-----hhhhccceEEEEeccccccchhhhhHHHHHHHH
Confidence 33333334455799999999985554443333322 222224899999999988652 1233333332
Q ss_pred cCCchHHHHHHhcC----CceEeecCcchhhHhhH----HhHHHHHHHHHHHHhh
Q 040649 164 ECPKPLKEILQLCD----NRWVLFDNKTKYEAKRT----EQVQQLLSLVNAVNVK 210 (371)
Q Consensus 164 ~~~~~l~~~~~~~~----~r~~~f~~~~~~sa~~~----~~i~~Ll~~i~~~~~~ 210 (371)
++.-++..+ .+++. .|+..| +++.+|.+.+...+..
T Consensus 151 -----~~KtLe~t~f~g~~PI~~------vsa~~G~~~~~~i~eL~e~l~s~if~ 194 (522)
T KOG0461|consen 151 -----VRKTLESTGFDGNSPIVE------VSAADGYFKEEMIQELKEALESRIFE 194 (522)
T ss_pred -----HHHHHHhcCcCCCCceeE------EecCCCccchhHHHHHHHHHHHhhcC
Confidence 444444332 23333 455555 8999999998866543
No 304
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=6.3e-08 Score=95.69 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=77.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC---------------CccceeEEEEeEEee----CCcEEEEEeCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS---------------SAITKTCEMKTTVLK----DGQVVNVIDTPG 78 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~---------------~~~t~~~~~~~~~~~----~~~~i~liDTPG 78 (371)
-..+|+++|+-++|||+|+..|.+...+...... .+++......+.... ...-++++||||
T Consensus 127 ~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPG 206 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPG 206 (971)
T ss_pred eEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCC
Confidence 4578999999999999999999987764321110 122222222222221 234789999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
..++ ..+....+. -+|++++|+|+.++..-....+++..-. +. .|+++|+||+|.+
T Consensus 207 HVnF-------~DE~ta~l~----~sDgvVlvvDv~EGVmlntEr~ikhaiq---~~--~~i~vviNKiDRL 262 (971)
T KOG0468|consen 207 HVNF-------SDETTASLR----LSDGVVLVVDVAEGVMLNTERIIKHAIQ---NR--LPIVVVINKVDRL 262 (971)
T ss_pred cccc-------hHHHHHHhh----hcceEEEEEEcccCceeeHHHHHHHHHh---cc--CcEEEEEehhHHH
Confidence 8874 334444444 4499999999997776665555554432 23 3999999999975
No 305
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.78 E-value=1.3e-08 Score=89.70 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=76.8
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
-.++|....+. ..+|+++|.|++|||||+..|++... ...+...+|.+|......+ +|-.+.++|.||+......
T Consensus 51 kg~GFeV~KsG--daRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsq 125 (364)
T KOG1486|consen 51 KGEGFEVLKSG--DARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQ 125 (364)
T ss_pred CCCCeeeeccC--CeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCccccccccc
Confidence 34444433322 37999999999999999999997654 3344556677777666677 8999999999999875433
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG 133 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~ 133 (371)
....+++... ....+|+|++|+|++ -+...+..++.-.+..|
T Consensus 126 gkGRGRQvia----vArtaDlilMvLDat--k~e~qr~~le~ELe~vG 167 (364)
T KOG1486|consen 126 GKGRGRQVIA----VARTADLILMVLDAT--KSEDQREILEKELEAVG 167 (364)
T ss_pred CCCCCceEEE----EeecccEEEEEecCC--cchhHHHHHHHHHHHhc
Confidence 2222333322 234569999999998 23344445544333333
No 306
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.77 E-value=4.9e-08 Score=84.29 Aligned_cols=118 Identities=15% Similarity=0.196 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+++|+++||||+|+-.|.-....+... ........+.+ +...+.+||.||... ....+..+...
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~~Tvt-----Siepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHRGTVT-----SIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCccCeee-----eeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 579999999999999986665333211111 11111222233 444579999999543 44444444442
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~ 152 (371)
. ..+-+++||+|.. -+...-....++|...+- .....|++++.||-|....
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tA 160 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTA 160 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhc
Confidence 2 3678999999987 455555555555544332 1223599999999998865
No 307
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=98.77 E-value=5.3e-08 Score=84.30 Aligned_cols=162 Identities=20% Similarity=0.158 Sum_probs=97.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+++|||..++|||+|+-+.+-. .|+... ..|....+. .....+|. .+.+|||.|-.+- -+.
T Consensus 5 ~K~VvVGDga~GKT~ll~~~t~~-~fp~~y---vPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Drl 69 (198)
T KOG0393|consen 5 IKCVVVGDGAVGKTCLLISYTTN-AFPEEY---VPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DRL 69 (198)
T ss_pred eEEEEECCCCcCceEEEEEeccC-cCcccc---cCeEEccceEEEEecCCCEEEEeeeecCCCccc-----------ccc
Confidence 68999999999999999887744 333322 122222222 12221244 5789999996552 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCchHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKPLK 170 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~l~ 170 (371)
-..+++..|+||+++++.++.+-. ...++-.++..++. -|+|+|.||.|+..+ ...++..... -......
T Consensus 70 RplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d-~~~~~~l~~~~~~~Vt~~~g~ 145 (198)
T KOG0393|consen 70 RPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD-PSTLEKLQRQGLEPVTYEQGL 145 (198)
T ss_pred cccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC-HHHHHHHHhccCCcccHHHHH
Confidence 245889999999999998665544 35566677766643 399999999997744 1222222111 1112233
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+....|. +++ .-||++..++.+.++....
T Consensus 146 ~lA~~iga~~y~------EcSa~tq~~v~~vF~~a~~ 176 (198)
T KOG0393|consen 146 ELAKEIGAVKYL------ECSALTQKGVKEVFDEAIR 176 (198)
T ss_pred HHHHHhCcceee------eehhhhhCCcHHHHHHHHH
Confidence 44444442 222 2467777888877776543
No 308
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.77 E-value=1e-07 Score=83.84 Aligned_cols=73 Identities=25% Similarity=0.246 Sum_probs=47.4
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.+|||||.... +.....++...+... .++-+++|++++. ...+...+......++ +.-+|+||.
T Consensus 83 ~~D~vlIDT~Gr~~~---d~~~~~el~~~~~~~--~~~~~~LVlsa~~--~~~~~~~~~~~~~~~~-----~~~lIlTKl 150 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPR---DEELLEELKKLLEAL--NPDEVHLVLSATM--GQEDLEQALAFYEAFG-----IDGLILTKL 150 (196)
T ss_dssp TSSEEEEEE-SSSST---HHHHHHHHHHHHHHH--SSSEEEEEEEGGG--GGHHHHHHHHHHHHSS-----TCEEEEEST
T ss_pred CCCEEEEecCCcchh---hHHHHHHHHHHhhhc--CCccceEEEeccc--ChHHHHHHHHHhhccc-----CceEEEEee
Confidence 356899999998753 344455566555544 6789999999983 3344444444444443 556779999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 151 Det~~ 155 (196)
T PF00448_consen 151 DETAR 155 (196)
T ss_dssp TSSST
T ss_pred cCCCC
Confidence 98755
No 309
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.77 E-value=1.8e-08 Score=85.35 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=40.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
...+++++|.+|+|||||+|+|++......+.. .++|...... . .+..++++||||+
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~-~~~t~~~~~~--~--~~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLKLKVGNV-PGTTTSQQEV--K--LDNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHccccccccCC-CCcccceEEE--E--ecCCEEEEECCCC
Confidence 457899999999999999999999776443222 3344433332 2 2356899999996
No 310
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.76 E-value=1.7e-08 Score=84.36 Aligned_cols=157 Identities=17% Similarity=0.128 Sum_probs=89.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
-.++++++|..|+||||+|.+.+.... ..+.. ..+..+.....+.. .....+.+|||.|-- ++-..
T Consensus 19 ~aiK~vivGng~VGKssmiqryCkgif-Tkdyk-ktIgvdflerqi~v~~Edvr~mlWdtagqe-----------EfDaI 85 (246)
T KOG4252|consen 19 RAIKFVIVGNGSVGKSSMIQRYCKGIF-TKDYK-KTIGVDFLERQIKVLIEDVRSMLWDTAGQE-----------EFDAI 85 (246)
T ss_pred hhEEEEEECCCccchHHHHHHHhcccc-ccccc-cccchhhhhHHHHhhHHHHHHHHHHhccch-----------hHHHH
Confidence 357899999999999999999984433 22111 11111111111111 123356689998833 34444
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++.|+.+.++|++.+++.+-+ ...+-+.+..-.+ . .|+++|-||+|++++ ..+.. ..+..+...
T Consensus 86 tkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~-~--IPtV~vqNKIDlved--s~~~~-------~evE~lak~ 153 (246)
T KOG4252|consen 86 TKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETE-R--IPTVFVQNKIDLVED--SQMDK-------GEVEGLAKK 153 (246)
T ss_pred HHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhc-c--CCeEEeeccchhhHh--hhcch-------HHHHHHHHH
Confidence 556788999999999988654432 2333344444333 2 399999999998866 22221 113334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
.+.|++. .|.+..-++...+.++.
T Consensus 154 l~~RlyR------tSvked~NV~~vF~YLa 177 (246)
T KOG4252|consen 154 LHKRLYR------TSVKEDFNVMHVFAYLA 177 (246)
T ss_pred hhhhhhh------hhhhhhhhhHHHHHHHH
Confidence 4445543 45555555555555443
No 311
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=8.5e-08 Score=90.96 Aligned_cols=119 Identities=17% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh--CCCccccCCCC------------------CccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL--GRRAFKASAGS------------------SAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~--g~~~~~~~~~~------------------~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
...+.+++-+|.+|||||-..|+ |.-.-..+... .+++.+...-.+.+ .++.++++|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 45789999999999999986654 32221111000 14444445555666 88999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
|.-|++-+ ..+. +..+|+.|.|+|+..++.+....+++..+-. .+ |++-++||+|....+
T Consensus 90 GHeDFSED-------TYRt----LtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR---~i--PI~TFiNKlDR~~rd 149 (528)
T COG4108 90 GHEDFSED-------TYRT----LTAVDSAVMVIDAAKGIEPQTLKLFEVCRLR---DI--PIFTFINKLDREGRD 149 (528)
T ss_pred Cccccchh-------HHHH----HHhhheeeEEEecccCccHHHHHHHHHHhhc---CC--ceEEEeeccccccCC
Confidence 99886433 2222 2234999999999878877777666655432 23 999999999987663
No 312
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.76 E-value=9.9e-08 Score=104.72 Aligned_cols=131 Identities=17% Similarity=0.259 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCC------CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc----chHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASA------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA----ESEYV 89 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~----~~~~~ 89 (371)
+=.+|+|++|+||||+++.. |...+-... ...+.|..|.. .-....++|||+|.+-... .....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~w-----wf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDW-----WFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcccce-----EecCCEEEEcCCCccccCCCcccccHHH
Confidence 45799999999999999876 655432211 11122333332 2344567999999764322 12345
Q ss_pred HHHHHHHHhhh--cCCceEEEEEEeCCCCCC--H--------HHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhH
Q 040649 90 SKEIAKCIGMA--KDGIHAVLLVFSVRSRFS--Q--------EEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTL 157 (371)
Q Consensus 90 ~~ei~~~~~~~--~~~~d~vl~v~d~~~~~~--~--------~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l 157 (371)
+..+...+... ...+++||+++|+..-++ . .-+..+..+...+|-.. |+.+|+||+|.+.. +
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~--PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARF--PVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCC--CEEEEEecchhhcC----H
Confidence 66677766554 357899999999873222 2 12344566777788776 99999999998843 4
Q ss_pred HHHhc
Q 040649 158 EDYLG 162 (371)
Q Consensus 158 ~~~l~ 162 (371)
.+|..
T Consensus 260 ~~~f~ 264 (1169)
T TIGR03348 260 EEFFA 264 (1169)
T ss_pred HHHHH
Confidence 44544
No 313
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.75 E-value=1.3e-07 Score=85.34 Aligned_cols=171 Identities=16% Similarity=0.202 Sum_probs=103.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc---------cccC-----CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA---------FKAS-----AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~---------~~~~-----~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+.+|+...|||||..+|++.-. +... ....++|.......+.. ..+.+..+|+||.-|
T Consensus 9 ~kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD 87 (394)
T COG0050 9 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD 87 (394)
T ss_pred CCCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH
Confidence 45668999999999999999999875322 1111 11135565544444444 678899999999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
..+.+.-. ....|..|+|+++.++.-+..++-+- |....|-+ ++++++||+|++++ ..+.+.+
T Consensus 88 -------YvKNMItg----AaqmDgAILVVsA~dGpmPqTrEHiL-larqvGvp---~ivvflnK~Dmvdd--~ellelV 150 (394)
T COG0050 88 -------YVKNMITG----AAQMDGAILVVAATDGPMPQTREHIL-LARQVGVP---YIVVFLNKVDMVDD--EELLELV 150 (394)
T ss_pred -------HHHHHhhh----HHhcCccEEEEEcCCCCCCcchhhhh-hhhhcCCc---EEEEEEecccccCc--HHHHHHH
Confidence 22323222 22348999999988655555544433 33334543 78899999999986 5555444
Q ss_pred cccCCchHHHHHHhcCCc--eEeecCcchhhHh--------hHHhHHHHHHHHHHHHhhc
Q 040649 162 GLECPKPLKEILQLCDNR--WVLFDNKTKYEAK--------RTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r--~~~f~~~~~~sa~--------~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. .+.+++...+-. -.++ ...|+. -...|.+|++.++..++..
T Consensus 151 em----EvreLLs~y~f~gd~~Pi---i~gSal~ale~~~~~~~~i~eLm~avd~yip~P 203 (394)
T COG0050 151 EM----EVRELLSEYGFPGDDTPI---IRGSALKALEGDAKWEAKIEELMDAVDSYIPTP 203 (394)
T ss_pred HH----HHHHHHHHcCCCCCCcce---eechhhhhhcCCcchHHHHHHHHHHHHhcCCCC
Confidence 43 366677655411 1111 111221 2345788888888877753
No 314
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.75 E-value=4.7e-08 Score=91.27 Aligned_cols=65 Identities=23% Similarity=0.367 Sum_probs=46.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE 87 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 87 (371)
...+++|+|.||+|||||+|+|+|......+. .+++|...+. +. .+..+.++||||+..+.....
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtPGi~~~~~~~~ 184 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQW--IK--LGKGLELLDTPGILWPKLEDQ 184 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEEE--EE--eCCcEEEEECCCcCCCCCCcH
Confidence 45789999999999999999999987644433 3455555432 22 245688999999987654433
No 315
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.74 E-value=1.6e-08 Score=88.57 Aligned_cols=57 Identities=28% Similarity=0.313 Sum_probs=38.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc-------cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-------ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~-------~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
..+++++|.+|+|||||+|+|++..... .....+++|..... +.. +..+.||||||+
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIK--IPL--GNGKKLYDTPGI 190 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEE--Eec--CCCCEEEeCcCC
Confidence 3689999999999999999999865422 11122344444333 222 225799999996
No 316
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.72 E-value=3.3e-08 Score=85.12 Aligned_cols=58 Identities=22% Similarity=0.376 Sum_probs=40.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
...+++++|.+|+|||||+|.|++...... ....++|...... .. + ..+.+|||||++
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~-~~~~~~T~~~~~~--~~-~-~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKV-GNKPGVTKGIQWI--KI-S-PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCEEeeeEEE--Ee-c-CCEEEEECCCCC
Confidence 346899999999999999999998775332 2223445444432 22 2 568999999974
No 317
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.71 E-value=8e-08 Score=77.36 Aligned_cols=162 Identities=18% Similarity=0.113 Sum_probs=96.6
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
++.....+|+++|-.++|||||++-|.+.+.-.--. |.-+......+.....++|+|.-|--. |
T Consensus 12 s~t~rEirilllGldnAGKTT~LKqL~sED~~hltp-----T~GFn~k~v~~~g~f~LnvwDiGGqr~-----------I 75 (185)
T KOG0074|consen 12 SRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP-----TNGFNTKKVEYDGTFHLNVWDIGGQRG-----------I 75 (185)
T ss_pred CCCcceEEEEEEecCCCcchhHHHHHccCChhhccc-----cCCcceEEEeecCcEEEEEEecCCccc-----------c
Confidence 444567899999999999999999999887632211 222223334442335789999988433 6
Q ss_pred HHHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
..++..++..+|.+|||+|.++ ++........+.+...- -...|+.+.-||-|.+.. ...++... +.
T Consensus 76 RpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeK--l~~vpvlIfankQdllta--a~~eeia~-------kl 144 (185)
T KOG0074|consen 76 RPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEK--LAEVPVLIFANKQDLLTA--AKVEEIAL-------KL 144 (185)
T ss_pred chhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhh--hhccceeehhhhhHHHhh--cchHHHHH-------hc
Confidence 6777888899999999999762 23222233333333211 112489999999998755 33332221 11
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
-+.....|.+.+.. .|+...+++.+-.++|.
T Consensus 145 nl~~lrdRswhIq~---csals~eg~~dg~~wv~ 175 (185)
T KOG0074|consen 145 NLAGLRDRSWHIQE---CSALSLEGSTDGSDWVQ 175 (185)
T ss_pred chhhhhhceEEeee---CccccccCccCcchhhh
Confidence 12223345554433 34445566665555554
No 318
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.71 E-value=5.6e-07 Score=84.92 Aligned_cols=125 Identities=17% Similarity=0.192 Sum_probs=68.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC------CCCCc-----------cceeEEEEeEE----------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS------AGSSA-----------ITKTCEMKTTV---------------- 64 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~------~~~~~-----------~t~~~~~~~~~---------------- 64 (371)
++..|+|+|++|+||||++..|++....... ..... ......+....
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999988754321110 00000 00000010000
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA----KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~----~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
...+..+.||||||.... ......++.+..... ...+|.+++|+|++.+.. ...........+ .+.
T Consensus 193 ~~~~~D~ViIDTaGr~~~---~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~--~~~~a~~f~~~~-----~~~ 262 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHN---KTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQN--ALSQAKAFHEAV-----GLT 262 (318)
T ss_pred HhCCCCEEEEeCCCCCcC---CHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChH--HHHHHHHHHhhC-----CCC
Confidence 013457899999998754 233334444433321 235788999999984322 222222222222 377
Q ss_pred EEEEeCCCCCCC
Q 040649 141 IVVFTGGDDLED 152 (371)
Q Consensus 141 ilv~tk~D~~~~ 152 (371)
-+|+||.|....
T Consensus 263 giIlTKlD~t~~ 274 (318)
T PRK10416 263 GIILTKLDGTAK 274 (318)
T ss_pred EEEEECCCCCCC
Confidence 899999996533
No 319
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=1.4e-07 Score=78.70 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc-CCCCCccc--eeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA-SAGSSAIT--KTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~-~~~~~~~t--~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....|+++|.-++|||||+-.+--...-.. +..+..+| .......+.. .+..+.+||.-|-- . ..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v-~~~~l~fwdlgGQe-------~----lr 83 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEV-CNAPLSFWDLGGQE-------S----LR 83 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceee-ccceeEEEEcCChH-------H----HH
Confidence 346799999999999999977532111001 11111222 2222233344 46688999987722 2 22
Q ss_pred HHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHH-HhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQT-LFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~-~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
.....++..+|+++||||+.+ ++... ...++.+.. -.-.. .|+++..||-|..+. ....+.-. .+.
T Consensus 84 Slw~~yY~~~H~ii~viDa~~~eR~~~~-~t~~~~v~~~E~leg--~p~L~lankqd~q~~--~~~~El~~-----~~~- 152 (197)
T KOG0076|consen 84 SLWKKYYWLAHGIIYVIDATDRERFEES-KTAFEKVVENEKLEG--APVLVLANKQDLQNA--MEAAELDG-----VFG- 152 (197)
T ss_pred HHHHHHHHHhceeEEeecCCCHHHHHHH-HHHHHHHHHHHHhcC--Cchhhhcchhhhhhh--hhHHHHHH-----Hhh-
Confidence 233334555699999999984 33332 222332221 11112 399999999997755 33322111 011
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.....+.|-.+|. ++|+..++||.+-..++...++.+
T Consensus 153 ~~e~~~~rd~~~~---pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 153 LAELIPRRDNPFQ---PVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred hhhhcCCccCccc---cchhhhcccHHHHHHHHHHHHhhc
Confidence 1333444555544 478899999999999998888776
No 320
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.70 E-value=7e-08 Score=89.63 Aligned_cols=62 Identities=23% Similarity=0.339 Sum_probs=44.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
...+++|+|.||+|||||+|+|+|.....++. .+++|...+. +.. +..+.++||||+.....
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~~--~~~~~l~DtPG~~~~~~ 178 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGN-RPGVTKGQQW--IKL--SDGLELLDTPGILWPKF 178 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeecceEE--EEe--CCCEEEEECCCcccCCC
Confidence 45789999999999999999999987644433 3445554433 222 34679999999976543
No 321
>PTZ00099 rab6; Provisional
Probab=98.69 E-value=3.5e-07 Score=79.15 Aligned_cols=115 Identities=17% Similarity=0.103 Sum_probs=71.3
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
..+.||||||... +......++.++|++|+|+|++++.+-.. ..++..+....+.. .|+++|.||+
T Consensus 29 v~l~iwDt~G~e~-----------~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~ 95 (176)
T PTZ00099 29 VRLQLWDTAGQER-----------FRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKT 95 (176)
T ss_pred EEEEEEECCChHH-----------hhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECc
Confidence 4788999999543 22233445678999999999985432222 23444444433333 4899999999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
|+........++ ........+..++ ..||+++.|+.++++.+...++..
T Consensus 96 DL~~~~~v~~~e---------~~~~~~~~~~~~~------e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 96 DLGDLRKVTYEE---------GMQKAQEYNTMFH------ETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred ccccccCCCHHH---------HHHHHHHcCCEEE------EEECCCCCCHHHHHHHHHHHHHhc
Confidence 975331112211 1223332332222 368889999999999999887653
No 322
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.69 E-value=2.9e-07 Score=75.22 Aligned_cols=119 Identities=21% Similarity=0.133 Sum_probs=73.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-CCCccccCCCCCccceeEEEE-eEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL-GRRAFKASAGSSAITKTCEMK-TTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~-g~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
...+|+++|.-++|||+++.-|+ |...+... ...|....+. +.....| ..+.+.||.|+.+. ...+
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e---~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~---~~eL---- 77 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTE---LHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG---QQEL---- 77 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCc---cccchhhheeEeeecCCChhheEEEeecccccCc---hhhh----
Confidence 34589999999999999997654 65553332 1123322222 2222222 37899999998863 1111
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh---CCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF---GKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~---~~~~~~~~ilv~tk~D~~~~ 152 (371)
-..+..-+|++++|.+..+ ......+..|+..+ .++.-.|++++.|+.|..++
T Consensus 78 ---prhy~q~aDafVLVYs~~d---~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p 133 (198)
T KOG3883|consen 78 ---PRHYFQFADAFVLVYSPMD---PESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP 133 (198)
T ss_pred ---hHhHhccCceEEEEecCCC---HHHHHHHHHHHHHHhhccccccccEEEEechhhcccc
Confidence 1233455699999998763 34445555555443 23333599999999998755
No 323
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6.5e-07 Score=71.99 Aligned_cols=154 Identities=14% Similarity=0.183 Sum_probs=90.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+.+++|.-|+|||.|+..++.......- +..+........+.. .....+.||||.|. +.+....
T Consensus 11 ifkyiiigdmgvgkscllhqftekkfmadc--phtigvefgtriievsgqkiklqiwdtagq-----------erfravt 77 (215)
T KOG0097|consen 11 IFKYIIIGDMGVGKSCLLHQFTEKKFMADC--PHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ-----------ERFRAVT 77 (215)
T ss_pred eEEEEEEccccccHHHHHHHHHHHHHhhcC--CcccceecceeEEEecCcEEEEEEeecccH-----------HHHHHHH
Confidence 357789999999999999998866543221 111112222222333 13347889999993 2355556
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++.++.+.++|.|++.+.+-.. ..++.-.+.+..+. ..++++.||.|+......+.++ .+.+.+..
T Consensus 78 rsyyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee---------ak~faeen 146 (215)
T KOG0097|consen 78 RSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE---------AKEFAEEN 146 (215)
T ss_pred HHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH---------HHHHHhhc
Confidence 677889999999999985444332 33444444433322 2577888999965332223322 23444433
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
+--+. ..|+++++++.+.+-
T Consensus 147 gl~fl------e~saktg~nvedafl 166 (215)
T KOG0097|consen 147 GLMFL------EASAKTGQNVEDAFL 166 (215)
T ss_pred CeEEE------EecccccCcHHHHHH
Confidence 32222 247778888876543
No 324
>PRK12288 GTPase RsgA; Reviewed
Probab=98.68 E-value=6e-08 Score=92.51 Aligned_cols=61 Identities=25% Similarity=0.370 Sum_probs=40.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----Ccc-ceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SAI-TKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~~-t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..++|+|.||+|||||+|+|+|.....++..+ +.. |+....+... .+ ..||||||+.....
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~--~~--~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFP--HG--GDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEec--CC--CEEEECCCCCcccC
Confidence 36899999999999999999998765443222 222 3333333321 22 35999999987543
No 325
>PRK12289 GTPase RsgA; Reviewed
Probab=98.68 E-value=3e-08 Score=94.59 Aligned_cols=59 Identities=27% Similarity=0.391 Sum_probs=39.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-----c-cceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-----A-ITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-----~-~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
..++|+|+||+|||||||+|+|......+..++ . +|+..+. +.++.+ ..||||||+...
T Consensus 173 ki~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l--~~l~~g--~~liDTPG~~~~ 237 (352)
T PRK12289 173 KITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVEL--FELPNG--GLLADTPGFNQP 237 (352)
T ss_pred ceEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeEE--EECCCC--cEEEeCCCcccc
Confidence 468999999999999999999877554332221 1 2333333 223222 379999998754
No 326
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.67 E-value=1.6e-08 Score=91.62 Aligned_cols=77 Identities=16% Similarity=0.149 Sum_probs=33.4
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHH---HHHHHHHHhCCCCCCeEEEEEeC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEA---AVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~---~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+.|+||||....-. .......+.+.+.. ...-++++++|+. .++..... .+-.+...+.-. .|.|.|+||
T Consensus 92 ~y~l~DtPGQiElf~-~~~~~~~i~~~L~~--~~~~~~v~LvD~~-~~~~~~~f~s~~L~s~s~~~~~~--lP~vnvlsK 165 (238)
T PF03029_consen 92 DYLLFDTPGQIELFT-HSDSGRKIVERLQK--NGRLVVVFLVDSS-FCSDPSKFVSSLLLSLSIMLRLE--LPHVNVLSK 165 (238)
T ss_dssp SEEEEE--SSHHHHH-HSHHHHHHHHTSSS------EEEEEE-GG-G-SSHHHHHHHHHHHHHHHHHHT--SEEEEEE--
T ss_pred cEEEEeCCCCEEEEE-echhHHHHHHHHhh--hcceEEEEEEecc-cccChhhHHHHHHHHHHHHhhCC--CCEEEeeec
Confidence 588999999542100 01122223333322 3456889999987 33332211 122222222112 399999999
Q ss_pred CCCCCC
Q 040649 147 GDDLED 152 (371)
Q Consensus 147 ~D~~~~ 152 (371)
+|....
T Consensus 166 ~Dl~~~ 171 (238)
T PF03029_consen 166 IDLLSK 171 (238)
T ss_dssp GGGS-H
T ss_pred cCcccc
Confidence 999863
No 327
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=4e-08 Score=79.33 Aligned_cols=162 Identities=19% Similarity=0.109 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+++++|--|+||+|+.-.+--.+.... ..|.......+.+ .+-++.|+|.-|-.+ +..++
T Consensus 17 ~e~rililgldGaGkttIlyrlqvgevvtt-----kPtigfnve~v~y-KNLk~~vwdLggqtS-----------irPyW 79 (182)
T KOG0072|consen 17 REMRILILGLDGAGKTTILYRLQVGEVVTT-----KPTIGFNVETVPY-KNLKFQVWDLGGQTS-----------IRPYW 79 (182)
T ss_pred cceEEEEeeccCCCeeEEEEEcccCccccc-----CCCCCcCcccccc-ccccceeeEccCccc-----------ccHHH
Confidence 457999999999999997654432221111 1122222333444 666889999888554 55556
Q ss_pred hhhcCCceEEEEEEeCC--CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVR--SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++...|++|||+|.. ++++..-..+...|.+--=.. -.++++.||.|.... .+..+.... + -+..
T Consensus 80 RcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~--a~llv~anKqD~~~~--~t~~E~~~~-----L--~l~~ 148 (182)
T KOG0072|consen 80 RCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQH--AKLLVFANKQDYSGA--LTRSEVLKM-----L--GLQK 148 (182)
T ss_pred HHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcC--ceEEEEeccccchhh--hhHHHHHHH-----h--ChHH
Confidence 66778889999999987 345544444444544321011 278889999997755 333333221 1 1223
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+|.+.+ ...||-++.|++..++++.+.++.
T Consensus 149 Lk~r~~~I---v~tSA~kg~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 149 LKDRIWQI---VKTSAVKGEGLDPAMDWLQRPLKS 180 (182)
T ss_pred HhhheeEE---EeeccccccCCcHHHHHHHHHHhc
Confidence 34454432 346888999999999999887764
No 328
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.62 E-value=1.1e-06 Score=81.30 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA----KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIV 142 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~----~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (371)
.+..+.||||||.... +.....++....... ...+|.+++|+|++. ..........+.+.+ .+.-+
T Consensus 153 ~~~D~ViIDT~G~~~~---d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~--~~~~~~~~~~f~~~~-----~~~g~ 222 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQN---KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT--GQNALEQAKVFNEAV-----GLTGI 222 (272)
T ss_pred CCCCEEEEeCCCCCcc---hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC--CHHHHHHHHHHHhhC-----CCCEE
Confidence 4467899999998763 333444444443322 235899999999973 333333333333323 26788
Q ss_pred EEeCCCCCCC
Q 040649 143 VFTGGDDLED 152 (371)
Q Consensus 143 v~tk~D~~~~ 152 (371)
|+||.|....
T Consensus 223 IlTKlDe~~~ 232 (272)
T TIGR00064 223 ILTKLDGTAK 232 (272)
T ss_pred EEEccCCCCC
Confidence 9999997644
No 329
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.62 E-value=3.9e-07 Score=94.05 Aligned_cols=175 Identities=18% Similarity=0.164 Sum_probs=89.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-CCC----------------------ccceeEEEEe------EEeeCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSS----------------------AITKTCEMKT------TVLKDGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-~~~----------------------~~t~~~~~~~------~~~~~~~ 69 (371)
+..|+|||++|+||||++..|++......+. ... ++........ .....+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 4689999999999999999998754321110 000 1100000000 0001345
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
.++||||||.... +....+++..... ...++-+++|+|++. ...+ ..++..+....+. .+.-+|+||.|
T Consensus 265 D~VLIDTAGRs~~---d~~l~eel~~l~~--~~~p~e~~LVLsAt~--~~~~l~~i~~~f~~~~~~---~i~glIlTKLD 334 (767)
T PRK14723 265 HLVLIDTVGMSQR---DRNVSEQIAMLCG--VGRPVRRLLLLNAAS--HGDTLNEVVHAYRHGAGE---DVDGCIITKLD 334 (767)
T ss_pred CEEEEeCCCCCcc---CHHHHHHHHHHhc--cCCCCeEEEEECCCC--cHHHHHHHHHHHhhcccC---CCCEEEEeccC
Confidence 7899999997653 2234444444332 345778899999873 2222 2233333322111 25678899999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchh-hHhhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKY-EAKRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~-sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
....-+. +-.++...+.++.++.+-..+ .....-.-..|.+.+....... .+|.+
T Consensus 335 Et~~~G~-------------iL~i~~~~~lPI~yit~GQ~VPdDL~~a~~~~lv~~ll~~~~~~--~~~~~ 390 (767)
T PRK14723 335 EATHLGP-------------ALDTVIRHRLPVHYVSTGQKVPEHLELAQADELVDRAFATPRRG--ALFAP 390 (767)
T ss_pred CCCCccH-------------HHHHHHHHCCCeEEEecCCCChhhcccCCHHHHHHHHhcccccC--CCCCC
Confidence 7744221 222444456666666554333 1112233344554444433332 45653
No 330
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.61 E-value=1.2e-07 Score=87.14 Aligned_cols=62 Identities=32% Similarity=0.362 Sum_probs=39.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC----C-CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS----A-GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~----~-~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+.+.+++|+||+|||||+|+|.+......+ . +.+..|++ ....+.+ .....|||||||....
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt-~~~l~~l--~~gG~iiDTPGf~~~~ 230 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTT-HVELFPL--PGGGWIIDTPGFRSLG 230 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccc-eEEEEEc--CCCCEEEeCCCCCccC
Confidence 457899999999999999999985543322 1 12333322 2222333 1234699999998653
No 331
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.61 E-value=6.9e-08 Score=87.99 Aligned_cols=59 Identities=25% Similarity=0.233 Sum_probs=40.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----C-ccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----S-AITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
..++|+|+||+|||||+|.|+|......+..+ + .+|+....... . ...|+||||+....
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l---~--~~~liDtPG~~~~~ 185 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF---H--GGLIADTPGFNEFG 185 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc---C--CcEEEeCCCccccC
Confidence 58899999999999999999987654433211 1 23434444332 2 23799999998654
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=98.60 E-value=1.8e-07 Score=87.83 Aligned_cols=60 Identities=30% Similarity=0.309 Sum_probs=40.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----Cc-cceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SA-ITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++|+|+||+|||||+|+|+|......+..+ +. +|+.... +.. . ....|+||||+...
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~--~~~-~-~~~~~~DtpG~~~~ 229 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVEL--YDL-P-GGGLLIDTPGFSSF 229 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEE--EEc-C-CCcEEEECCCcCcc
Confidence 468999999999999999999998765443222 11 2322222 222 2 23489999999853
No 333
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.58 E-value=8.7e-07 Score=86.19 Aligned_cols=144 Identities=16% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-----------------------ccceeEEEEe-------EEee
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-----------------------AITKTCEMKT-------TVLK 66 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-----------------------~~t~~~~~~~-------~~~~ 66 (371)
+.+.+|+|+|++|+||||++..|+|......+.... ++........ .. .
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~-l 267 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHE-L 267 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHH-h
Confidence 345799999999999999999887642211100000 0000000000 00 1
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.+|||+|.... ......++.... ....++-.++|+|++. ...+ +..+...|.. ....-+|+||
T Consensus 268 ~~~d~VLIDTaGrsqr---d~~~~~~l~~l~--~~~~~~~~~LVl~at~--~~~~---~~~~~~~f~~--~~~~~~I~TK 335 (420)
T PRK14721 268 RGKHMVLIDTVGMSQR---DQMLAEQIAMLS--QCGTQVKHLLLLNATS--SGDT---LDEVISAYQG--HGIHGCIITK 335 (420)
T ss_pred cCCCEEEecCCCCCcc---hHHHHHHHHHHh--ccCCCceEEEEEcCCC--CHHH---HHHHHHHhcC--CCCCEEEEEe
Confidence 3456889999997753 223334444322 1234567889999872 2222 2222233332 2367788999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
.|....-+. +-.++...+.++.++.+-
T Consensus 336 lDEt~~~G~-------------~l~~~~~~~lPi~yvt~G 362 (420)
T PRK14721 336 VDEAASLGI-------------ALDAVIRRKLVLHYVTNG 362 (420)
T ss_pred eeCCCCccH-------------HHHHHHHhCCCEEEEECC
Confidence 997744221 222444556666666654
No 334
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=1.3e-07 Score=77.67 Aligned_cols=165 Identities=16% Similarity=0.089 Sum_probs=87.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee------CC----cEEEEEeCCCCCCCCcchHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK------DG----QVVNVIDTPGLFDSSAESEYV 89 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~------~~----~~i~liDTPG~~~~~~~~~~~ 89 (371)
++++.+|.+|+||||++-.-+.....+.-.+..++. .......+. .| ..+.+|||.|.-
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGID--FreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE--------- 78 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGID--FREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE--------- 78 (219)
T ss_pred HHHHhhccCCCCceEEEEEecCCcccceeEEEeecc--cccceEEEeccCCCCCCcceEEEEeeeccccHH---------
Confidence 467889999999999987766544322111111111 111111110 11 147799999932
Q ss_pred HHHHHHHHhhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCch
Q 040649 90 SKEIAKCIGMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKP 168 (371)
Q Consensus 90 ~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~ 168 (371)
.+.......+..+-++|+++|.++.-+ -....++..|+...=. -..-++++.||+|+... ..+. ...
T Consensus 79 --RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYc-E~PDivlcGNK~DL~~~--R~Vs-------~~q 146 (219)
T KOG0081|consen 79 --RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYC-ENPDIVLCGNKADLEDQ--RVVS-------EDQ 146 (219)
T ss_pred --HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhcc-CCCCEEEEcCccchhhh--hhhh-------HHH
Confidence 234444445566789999999984222 1234555555543111 11268899999996633 1111 123
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+..+.+.+++..+..+. ..-.+.++-|++.|...+.
T Consensus 147 a~~La~kyglPYfETSA~tg--~Nv~kave~LldlvM~Rie 185 (219)
T KOG0081|consen 147 AAALADKYGLPYFETSACTG--TNVEKAVELLLDLVMKRIE 185 (219)
T ss_pred HHHHHHHhCCCeeeeccccC--cCHHHHHHHHHHHHHHHHH
Confidence 45677777877776433211 1112444555555544433
No 335
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.56 E-value=2.6e-07 Score=86.29 Aligned_cols=59 Identities=32% Similarity=0.351 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----C-ccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----S-AITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~-~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
.+++++|++|+|||||+|+|+|...+.++..+ + .+|+.... +.+ . ....++||||+.+.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~--~~~-~-~~~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHREL--FPL-P-GGGLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEEE--EEc-C-CCCEEEECCCCCcc
Confidence 68999999999999999999998765543221 1 12333322 222 1 13479999999653
No 336
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=98.54 E-value=9.5e-08 Score=89.82 Aligned_cols=118 Identities=20% Similarity=0.290 Sum_probs=83.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCCccccCCC-------------CCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL---GRRAFKASAG-------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~---g~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+..+|+++.+-.+||||.-..|+ |.......+. ..++|.......+.| .|..+++|||||..|
T Consensus 36 kirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdw-kg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDW-KGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeeccc-ccceEeeecCCCcce
Confidence 45689999999999999987765 3221100000 125666666666777 999999999999988
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+... +.+|+... |+++.|+|++.+.......+++...+. + .|.++.+||+|.+..
T Consensus 115 f~le-------verclrvl----dgavav~dasagve~qtltvwrqadk~---~--ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLE-------VERCLRVL----DGAVAVFDASAGVEAQTLTVWRQADKF---K--IPAHCFINKMDKLAA 169 (753)
T ss_pred EEEE-------HHHHHHHh----cCeEEEEeccCCcccceeeeehhcccc---C--Cchhhhhhhhhhhhh
Confidence 6543 45565544 999999999877766665555544332 2 399999999998754
No 337
>PRK14974 cell division protein FtsY; Provisional
Probab=98.53 E-value=9.8e-07 Score=83.64 Aligned_cols=73 Identities=18% Similarity=0.183 Sum_probs=44.5
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... ......++...... ..+|.+++|+|+..+ .........+...+ ...-+|+||.
T Consensus 222 ~~DvVLIDTaGr~~~---~~~lm~eL~~i~~~--~~pd~~iLVl~a~~g--~d~~~~a~~f~~~~-----~~~giIlTKl 289 (336)
T PRK14974 222 GIDVVLIDTAGRMHT---DANLMDELKKIVRV--TKPDLVIFVGDALAG--NDAVEQAREFNEAV-----GIDGVILTKV 289 (336)
T ss_pred CCCEEEEECCCccCC---cHHHHHHHHHHHHh--hCCceEEEeeccccc--hhHHHHHHHHHhcC-----CCCEEEEeee
Confidence 456899999998753 23344555444332 257899999998732 22222223333222 2677899999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 290 D~~~~ 294 (336)
T PRK14974 290 DADAK 294 (336)
T ss_pred cCCCC
Confidence 97644
No 338
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.53 E-value=4.8e-07 Score=86.38 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=77.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcc--------ccCCCC-------------CccceeEEEEeEE-------ee--CC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAF--------KASAGS-------------SAITKTCEMKTTV-------LK--DG 68 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~--------~~~~~~-------------~~~t~~~~~~~~~-------~~--~~ 68 (371)
...|+|+|++|+||||++..|++.... ...... .++.......... .. .+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 468999999999999999998742210 000000 0100000000000 00 13
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.||||||.... +.....++...+.. ..+|.+++|+|++.. .......+..+.. ...--+|+||.|
T Consensus 321 ~DvVLIDTaGRs~k---d~~lm~EL~~~lk~--~~PdevlLVLsATtk-~~d~~~i~~~F~~------~~idglI~TKLD 388 (436)
T PRK11889 321 VDYILIDTAGKNYR---ASETVEEMIETMGQ--VEPDYICLTLSASMK-SKDMIEIITNFKD------IHIDGIVFTKFD 388 (436)
T ss_pred CCEEEEeCccccCc---CHHHHHHHHHHHhh--cCCCeEEEEECCccC-hHHHHHHHHHhcC------CCCCEEEEEccc
Confidence 47899999997653 23344555555543 346788999988622 1122333333332 236778899999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
....-+. +-.+...++.++.++.+-
T Consensus 389 ET~k~G~-------------iLni~~~~~lPIsyit~G 413 (436)
T PRK11889 389 ETASSGE-------------LLKIPAVSSAPIVLMTDG 413 (436)
T ss_pred CCCCccH-------------HHHHHHHHCcCEEEEeCC
Confidence 7744221 223445556666666553
No 339
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.53 E-value=2.2e-07 Score=89.40 Aligned_cols=121 Identities=20% Similarity=0.200 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccc----cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFK----ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..++|+|.+|+|||||+|+|++..... .....+++|..... +.. +..+.++||||+.....-...+..+-..
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPL--DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEe--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 589999999999999999999864311 11223444443332 222 3346799999998642111111111111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.+. ....+..+.|+++....+.-.....+..+.. .. ..+.+.+++.+.+
T Consensus 231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~---~~--~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKG---EK--TSFTFYVSNELNI 279 (360)
T ss_pred hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecC---Cc--eEEEEEccCCcee
Confidence 111 1235677888887764333333333333321 11 2556666666654
No 340
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.50 E-value=1.2e-06 Score=83.97 Aligned_cols=128 Identities=21% Similarity=0.237 Sum_probs=67.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC-CCCccceeE------------------EEEeEE----------eeCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA-GSSAITKTC------------------EMKTTV----------LKDGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-~~~~~t~~~------------------~~~~~~----------~~~~~ 69 (371)
+..++|+|++|+||||++..|++......+. ...-+|.+. ...... ...+.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4689999999999999999987643211110 000001000 000000 01345
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCC---CCeEEEEEeC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKI---FDYMIVVFTG 146 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~---~~~~ilv~tk 146 (371)
.+.+|||||.... +....+++.. +. ....+.-.++|++++...... ...+..+....+.+. ..+.-+|+||
T Consensus 217 DlVLIDTaG~~~~---d~~l~e~La~-L~-~~~~~~~~lLVLsAts~~~~l-~evi~~f~~~~~~p~~~~~~~~~~I~TK 290 (374)
T PRK14722 217 HMVLIDTIGMSQR---DRTVSDQIAM-LH-GADTPVQRLLLLNATSHGDTL-NEVVQAYRSAAGQPKAALPDLAGCILTK 290 (374)
T ss_pred CEEEEcCCCCCcc---cHHHHHHHHH-Hh-ccCCCCeEEEEecCccChHHH-HHHHHHHHHhhcccccccCCCCEEEEec
Confidence 7899999998753 2223333332 22 223455678899988433222 233444444332111 1245688999
Q ss_pred CCCCCC
Q 040649 147 GDDLED 152 (371)
Q Consensus 147 ~D~~~~ 152 (371)
.|....
T Consensus 291 lDEt~~ 296 (374)
T PRK14722 291 LDEASN 296 (374)
T ss_pred cccCCC
Confidence 997744
No 341
>COG1161 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=2.2e-07 Score=87.99 Aligned_cols=63 Identities=25% Similarity=0.344 Sum_probs=45.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
...+++|||-|++|||||||+|+|.....++. .+++|...+... -+..+.++||||+......
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~-~PG~Tk~~q~i~----~~~~i~LlDtPGii~~~~~ 193 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSN-RPGTTKGIQWIK----LDDGIYLLDTPGIIPPKFD 193 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCC-CCceecceEEEE----cCCCeEEecCCCcCCCCcc
Confidence 34789999999999999999999998844433 345555444332 2344889999999876443
No 342
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=98.49 E-value=3.9e-07 Score=91.61 Aligned_cols=120 Identities=21% Similarity=0.333 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
.++....++.++.+...|||||..+|+...-.-+. ....++|......+... .+..+++||+||.
T Consensus 4 ~~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~-~~~~~nlidspgh 82 (887)
T KOG0467|consen 4 KGSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLH-KDYLINLIDSPGH 82 (887)
T ss_pred CCCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeecccccccc-CceEEEEecCCCc
Confidence 34455689999999999999999998754421111 11124444333333333 6778999999999
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.|++ .++......+ |..++.+|+..+........++..-. +.. ..++|+||+|.+
T Consensus 83 vdf~-------sevssas~l~----d~alvlvdvvegv~~qt~~vlrq~~~---~~~--~~~lvinkidrl 137 (887)
T KOG0467|consen 83 VDFS-------SEVSSASRLS----DGALVLVDVVEGVCSQTYAVLRQAWI---EGL--KPILVINKIDRL 137 (887)
T ss_pred cchh-------hhhhhhhhhc----CCcEEEEeeccccchhHHHHHHHHHH---ccC--ceEEEEehhhhH
Confidence 8853 2344444444 99999999998888887777763321 122 789999999954
No 343
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.49 E-value=8.7e-07 Score=84.46 Aligned_cols=147 Identities=19% Similarity=0.188 Sum_probs=81.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC-CCccceeE----------------------EEEeE------EeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG-SSAITKTC----------------------EMKTT------VLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~----------------------~~~~~------~~~~~ 68 (371)
++..|+||||||+||||++--|........+.. .+-+|+++ ....- .....
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 367999999999999999988875544111111 11111110 00000 00134
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
+.+.+|||.|.... +.....++..++... ...-+.+|++++.. .. -+..+...|+.- ..--++|||.|
T Consensus 282 ~d~ILVDTaGrs~~---D~~~i~el~~~~~~~--~~i~~~Lvlsat~K-~~----dlkei~~~f~~~--~i~~~I~TKlD 349 (407)
T COG1419 282 CDVILVDTAGRSQY---DKEKIEELKELIDVS--HSIEVYLVLSATTK-YE----DLKEIIKQFSLF--PIDGLIFTKLD 349 (407)
T ss_pred CCEEEEeCCCCCcc---CHHHHHHHHHHHhcc--ccceEEEEEecCcc-hH----HHHHHHHHhccC--CcceeEEEccc
Confidence 57899999997653 334455566665544 34457778888722 12 223333334322 25567899999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchh
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKY 189 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~ 189 (371)
.... +-+ +-.++...+-++.++.+-..+
T Consensus 350 ET~s----~G~---------~~s~~~e~~~PV~YvT~GQ~V 377 (407)
T COG1419 350 ETTS----LGN---------LFSLMYETRLPVSYVTNGQRV 377 (407)
T ss_pred ccCc----hhH---------HHHHHHHhCCCeEEEeCCCCC
Confidence 8744 222 223455556677777665433
No 344
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=98.48 E-value=4.8e-07 Score=86.20 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=59.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~~~ 83 (371)
..++|||.|++|||||+|+|++...-.. ..++.+|..+......+++. ..+.++|.||+....
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 5799999999999999999998875122 22244444444433333232 257899999998653
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
......+..+...+.. +|++++|++..
T Consensus 82 s~g~Glgn~fL~~ir~----~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIRE----VDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHh----CCEEEEEEeCC
Confidence 3223344445555544 49999999874
No 345
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.47 E-value=2.7e-07 Score=73.57 Aligned_cols=158 Identities=13% Similarity=0.102 Sum_probs=92.7
Q ss_pred EEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhc
Q 040649 23 VLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAK 101 (371)
Q Consensus 23 ~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~ 101 (371)
+++|.+++|||.|+-..-... |-.+.--..+..+.....+.. .....+.+|||.|.. .+......++
T Consensus 1 mllgds~~gktcllir~kdga-fl~~~fistvgid~rnkli~~~~~kvklqiwdtagqe-----------rfrsvt~ayy 68 (192)
T KOG0083|consen 1 MLLGDSCTGKTCLLIRFKDGA-FLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQE-----------RFRSVTHAYY 68 (192)
T ss_pred CccccCccCceEEEEEeccCc-eecCceeeeeeeccccceeccCCcEEEEEEeeccchH-----------HHhhhhHhhh
Confidence 378999999998763322111 111110011111111111222 123378899999932 2455566678
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 102 DGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 102 ~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
..+|+++++.|+.++-+-.. ..++..+++.-...+ .++++.||+|...+. .+. ...-..+.+..+.++
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~er------~v~---~ddg~kla~~y~ipf 137 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAHER------AVK---RDDGEKLAEAYGIPF 137 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccchhh------ccc---cchHHHHHHHHCCCc
Confidence 89999999999986554333 567777777654444 788999999975431 111 111234555555555
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.. .|++++-+++-.+-.|..-+.
T Consensus 138 me------tsaktg~nvd~af~~ia~~l~ 160 (192)
T KOG0083|consen 138 ME------TSAKTGFNVDLAFLAIAEELK 160 (192)
T ss_pred ee------ccccccccHhHHHHHHHHHHH
Confidence 53 688888888877777665444
No 346
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.46 E-value=1.8e-06 Score=83.42 Aligned_cols=124 Identities=16% Similarity=0.187 Sum_probs=66.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCC----CC------------------CccceeEEEEeEE-----eeCCcEE
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASA----GS------------------SAITKTCEMKTTV-----LKDGQVV 71 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~----~~------------------~~~t~~~~~~~~~-----~~~~~~i 71 (371)
...++|+|++||||||++..|+.......+. .. .++.......... ...+..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~ 302 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSEL 302 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCE
Confidence 4578999999999999998886422110000 00 0110000000000 0135578
Q ss_pred EEEeCCCCCCCCcchHHHHHHHHHHHhhhc-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 72 NVIDTPGLFDSSAESEYVSKEIAKCIGMAK-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 72 ~liDTPG~~~~~~~~~~~~~ei~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
.||||||+...+ .....++...+.... ..++-+++|+|++.. ..+ +..+...|.. ..+.-+|+||.|..
T Consensus 303 VLIDTaGr~~rd---~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~--~~~---~~~~~~~f~~--~~~~glIlTKLDEt 372 (432)
T PRK12724 303 ILIDTAGYSHRN---LEQLERMQSFYSCFGEKDSVENLLVLSSTSS--YHH---TLTVLKAYES--LNYRRILLTKLDEA 372 (432)
T ss_pred EEEeCCCCCccC---HHHHHHHHHHHHhhcCCCCCeEEEEEeCCCC--HHH---HHHHHHHhcC--CCCCEEEEEcccCC
Confidence 999999987532 233444555444322 235678899998832 222 1222222321 23677899999976
Q ss_pred CC
Q 040649 151 ED 152 (371)
Q Consensus 151 ~~ 152 (371)
..
T Consensus 373 ~~ 374 (432)
T PRK12724 373 DF 374 (432)
T ss_pred CC
Confidence 44
No 347
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.45 E-value=1.8e-06 Score=78.78 Aligned_cols=111 Identities=16% Similarity=0.162 Sum_probs=57.4
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHH-HHHHHhCCCCCCeEEEEEeC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVH-RLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~-~l~~~~~~~~~~~~ilv~tk 146 (371)
|..+.||.|-|.+.+... +. . -+|.+++|.-.. .. .+.+.++ -+.++ -=++|+||
T Consensus 143 G~DvIIVETVGvGQsev~-------I~---~----~aDt~~~v~~pg--~G-D~~Q~iK~GimEi-------aDi~vINK 198 (323)
T COG1703 143 GYDVIIVETVGVGQSEVD-------IA---N----MADTFLVVMIPG--AG-DDLQGIKAGIMEI-------ADIIVINK 198 (323)
T ss_pred CCCEEEEEecCCCcchhH-------Hh---h----hcceEEEEecCC--CC-cHHHHHHhhhhhh-------hheeeEec
Confidence 456889999998864211 22 2 238888877443 22 2222222 22232 44789999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.|..+. .....++... +...-.... ..--..+....+|.+++|+++|++.|.+...
T Consensus 199 aD~~~A-~~a~r~l~~a-----l~~~~~~~~-~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 199 ADRKGA-EKAARELRSA-----LDLLREVWR-ENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred cChhhH-HHHHHHHHHH-----HHhhccccc-ccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 994433 1222222221 221110000 0001122234678889999999999987654
No 348
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.44 E-value=3.8e-06 Score=83.20 Aligned_cols=175 Identities=17% Similarity=0.173 Sum_probs=87.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc----------cCCCCCc---------cceeEEEEeEE----------eeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK----------ASAGSSA---------ITKTCEMKTTV----------LKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~----------~~~~~~~---------~t~~~~~~~~~----------~~~~ 68 (371)
.+..|+|+|++|+||||++..|.+.-... ......+ ......+.... ...+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 45789999999999999998887531100 0000000 00000001000 0024
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.||||||.... +.....++.. +.... ....++|++.+...... ...++.+... .+.-+|+||+|
T Consensus 429 ~DLVLIDTaG~s~~---D~~l~eeL~~-L~aa~--~~a~lLVLpAtss~~Dl-~eii~~f~~~------~~~gvILTKlD 495 (559)
T PRK12727 429 YKLVLIDTAGMGQR---DRALAAQLNW-LRAAR--QVTSLLVLPANAHFSDL-DEVVRRFAHA------KPQGVVLTKLD 495 (559)
T ss_pred CCEEEecCCCcchh---hHHHHHHHHH-HHHhh--cCCcEEEEECCCChhHH-HHHHHHHHhh------CCeEEEEecCc
Confidence 57899999998643 2222222322 22111 23567788877332222 2233333321 37789999999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhh-HhhHHhHHHHHHHHHHHHhhcCCCCCChH
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYE-AKRTEQVQQLLSLVNAVNVKNGGQPYTNE 219 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~s-a~~~~~i~~Ll~~i~~~~~~~~~~~y~~~ 219 (371)
.... +-. +-.++...+-++.++.+-..++ ....-....|...+..+-.. .+.+++.+
T Consensus 496 Et~~----lG~---------aLsv~~~~~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l~~~-~~~~~~~~ 553 (559)
T PRK12727 496 ETGR----FGS---------ALSVVVDHQMPITWVTDGQRVPDDLHRANAASLVLRLEDLRRA-ADKPCTPE 553 (559)
T ss_pred Cccc----hhH---------HHHHHHHhCCCEEEEeCCCCchhhhhcCCHHHHHHHHHHHHhh-ccCCCChh
Confidence 7533 211 2223444456666666543331 12223445566666655444 34466543
No 349
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.44 E-value=6.6e-07 Score=75.65 Aligned_cols=57 Identities=30% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGL 79 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~ 79 (371)
...+++++|.+|+||||++|.+.+........ ..+.|...+. +. .+..+.++||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~-~~~~t~~~~~--~~--~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSP-SPGYTKGEQL--VK--ITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCC-CCCeeeeeEE--EE--cCCCEEEEECcCC
Confidence 34688999999999999999999866533322 2233333222 11 2346899999995
No 350
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.43 E-value=1.2e-06 Score=77.73 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|+|++|+|||||++.++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998754
No 351
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=98.40 E-value=1.4e-05 Score=80.26 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-+|+|||++|+|||||++.|+|...+.++
T Consensus 28 ~G~riGLvG~NGaGKSTLLkilaG~~~~~~G 58 (530)
T COG0488 28 PGERIGLVGRNGAGKSTLLKILAGELEPDSG 58 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCcCCCC
Confidence 4569999999999999999999999876553
No 352
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=98.40 E-value=5.1e-07 Score=87.41 Aligned_cols=61 Identities=31% Similarity=0.388 Sum_probs=45.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
..+|++||-|++||||+||+|.|.... +..+++|.|..++. +.+ ...+.++|+||+.-++.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkV-sVS~TPGkTKHFQT--i~l--s~~v~LCDCPGLVfPSf 374 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKV-SVSSTPGKTKHFQT--IFL--SPSVCLCDCPGLVFPSF 374 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCcee-eeecCCCCcceeEE--EEc--CCCceecCCCCccccCC
Confidence 589999999999999999999999873 33445666654443 332 34678999999876544
No 353
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.39 E-value=3.1e-07 Score=82.57 Aligned_cols=107 Identities=21% Similarity=0.178 Sum_probs=54.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC--CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR--SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
|..+.||.|.|.+.. + .... .-+|.+++|+... +.+...-. -+.++ .=++|+|
T Consensus 121 G~D~IiiETVGvGQs----E------~~I~----~~aD~~v~v~~Pg~GD~iQ~~Ka----GimEi-------aDi~vVN 175 (266)
T PF03308_consen 121 GFDVIIIETVGVGQS----E------VDIA----DMADTVVLVLVPGLGDEIQAIKA----GIMEI-------ADIFVVN 175 (266)
T ss_dssp T-SEEEEEEESSSTH----H------HHHH----TTSSEEEEEEESSTCCCCCTB-T----THHHH--------SEEEEE
T ss_pred CCCEEEEeCCCCCcc----H------HHHH----HhcCeEEEEecCCCccHHHHHhh----hhhhh-------ccEEEEe
Confidence 457889999998752 1 1112 2348999988665 22221111 12222 5588999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceE-eecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV-LFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~-~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
|.|.... +..... ++..+.....+.- -..+....||.++.|+++|++.|.+...
T Consensus 176 KaD~~gA-----~~~~~~-----l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 176 KADRPGA-----DRTVRD-----LRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp --SHHHH-----HHHHHH-----HHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred CCChHHH-----HHHHHH-----HHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 9994322 111111 3334433221100 0011223577788999999999886544
No 354
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.39 E-value=9.7e-07 Score=77.22 Aligned_cols=124 Identities=20% Similarity=0.236 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-ccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH-HH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK-CI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~-~~ 97 (371)
.+|+++|.+||||||+=-.+.... .++ ....+.|.+.......+.++-.+.++|.-| ++...+.+.. .-
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D--~~rlg~tidveHsh~RflGnl~LnlwDcGg-------qe~fmen~~~~q~ 75 (295)
T KOG3886|consen 5 KKVLLMGRSGSGKSSMRSIIFANYIARD--TRRLGATIDVEHSHVRFLGNLVLNLWDCGG-------QEEFMENYLSSQE 75 (295)
T ss_pred ceEEEeccCCCCccccchhhhhhhhhhh--hhccCCcceeeehhhhhhhhheeehhccCC-------cHHHHHHHHhhcc
Confidence 689999999999999765555322 111 223445555555445453456888999888 3333443333 22
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
......++++++|+|+..+--..|... -.-|..++.....-.+.+.++|+|++..
T Consensus 76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~ 131 (295)
T KOG3886|consen 76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQE 131 (295)
T ss_pred hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhccc
Confidence 234567899999999984322223222 2222222222222378899999998855
No 355
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=98.38 E-value=1e-06 Score=81.25 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=64.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC----------------cEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------QVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~i~liDTPG~~~ 81 (371)
..+.+++||.+++|||||+|+|+..... ....+.+|.++....+..++. -.++|+|..|+..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~--~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvk 96 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG--AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVK 96 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCCC--ccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccccc
Confidence 4589999999999999999999987763 344556666655544433211 2689999999987
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.......++..++..++. +|+++-|+++.
T Consensus 97 GAs~G~GLGN~FLs~iR~----vDaifhVVr~f 125 (391)
T KOG1491|consen 97 GASAGEGLGNKFLSHIRH----VDAIFHVVRAF 125 (391)
T ss_pred CcccCcCchHHHHHhhhh----ccceeEEEEec
Confidence 655555566666666554 48998888764
No 356
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=5.8e-06 Score=81.18 Aligned_cols=144 Identities=21% Similarity=0.204 Sum_probs=74.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeE------------------EEEeEE----------eeCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTC------------------EMKTTV----------LKDGQ 69 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~------------------~~~~~~----------~~~~~ 69 (371)
+..++|+|++|+||||++..|++... ...+....-++.+. ...... ...+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 45899999999999999887764322 11100000000000 000000 01245
Q ss_pred EEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCC
Q 040649 70 VVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDD 149 (371)
Q Consensus 70 ~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~ 149 (371)
.+.||||||.... +.....++...+.. ...++-+++|++++. ...+ +..+...|..- .+.-+|+||+|.
T Consensus 301 DlVlIDt~G~~~~---d~~~~~~L~~ll~~-~~~~~~~~LVl~a~~--~~~~---l~~~~~~f~~~--~~~~vI~TKlDe 369 (424)
T PRK05703 301 DVILIDTAGRSQR---DKRLIEELKALIEF-SGEPIDVYLVLSATT--KYED---LKDIYKHFSRL--PLDGLIFTKLDE 369 (424)
T ss_pred CEEEEeCCCCCCC---CHHHHHHHHHHHhc-cCCCCeEEEEEECCC--CHHH---HHHHHHHhCCC--CCCEEEEecccc
Confidence 7899999998653 22233444444442 223457778888872 2222 22222233321 244688999997
Q ss_pred CCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 150 LEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 150 ~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
...-+ .+-.++...+.++.++.+-
T Consensus 370 t~~~G-------------~i~~~~~~~~lPv~yit~G 393 (424)
T PRK05703 370 TSSLG-------------SILSLLIESGLPISYLTNG 393 (424)
T ss_pred ccccc-------------HHHHHHHHHCCCEEEEeCC
Confidence 53311 1333555566677766654
No 357
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.37 E-value=1.4e-06 Score=75.52 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||+++|+|...+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGLEEPDS 54 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999866443
No 358
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.37 E-value=4.3e-06 Score=79.65 Aligned_cols=144 Identities=15% Similarity=0.105 Sum_probs=76.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC------cc--ccCCCC-C------------ccceeEEEEeEE-------e--eC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR------AF--KASAGS-S------------AITKTCEMKTTV-------L--KD 67 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~------~~--~~~~~~-~------------~~t~~~~~~~~~-------~--~~ 67 (371)
++..|+|+|++|+||||++..|+... +. ...... + ++.......+.. . ..
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~ 284 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVN 284 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcC
Confidence 45789999999999999998886321 10 000000 0 110000000000 0 02
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...... ..+|.+++|++++ ....+ ....+.. |.. ..+.-+|+||.
T Consensus 285 ~~D~VLIDTAGr~~~---d~~~l~EL~~l~~~--~~p~~~~LVLsag--~~~~d--~~~i~~~-f~~--l~i~glI~TKL 352 (407)
T PRK12726 285 CVDHILIDTVGRNYL---AEESVSEISAYTDV--VHPDLTCFTFSSG--MKSAD--VMTILPK-LAE--IPIDGFIITKM 352 (407)
T ss_pred CCCEEEEECCCCCcc---CHHHHHHHHHHhhc--cCCceEEEECCCc--ccHHH--HHHHHHh-cCc--CCCCEEEEEcc
Confidence 458899999998653 33344455544432 2567778888764 33322 3333332 322 23677889999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
|....-+. +-.+....+.++.++.+-
T Consensus 353 DET~~~G~-------------~Lsv~~~tglPIsylt~G 378 (407)
T PRK12726 353 DETTRIGD-------------LYTVMQETNLPVLYMTDG 378 (407)
T ss_pred cCCCCccH-------------HHHHHHHHCCCEEEEecC
Confidence 97644221 222444556666666543
No 359
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.36 E-value=1.3e-06 Score=76.95 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|++|+|||||++.+++.
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~~ 24 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTRA 24 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999998875
No 360
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.35 E-value=9.7e-07 Score=81.46 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
..-++|+||+|++......++.++.. ++.+.+ ..++++ .|++++.|+++|+++|..
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~-----lr~lnp--~a~I~~------vSA~tGeGld~L~~~L~~ 286 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIAC-----AREVNP--EIEIIL------ISATSGEGMDQWLNWLET 286 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHH-----HHhhCC--CCcEEE------EECCCCCCHHHHHHHHHH
Confidence 37799999999875322344444432 333321 233443 577788999999999865
No 361
>PRK13796 GTPase YqeH; Provisional
Probab=98.32 E-value=9.3e-07 Score=85.28 Aligned_cols=59 Identities=25% Similarity=0.241 Sum_probs=38.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc----cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA----FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
...++|||.+|+|||||||+|++... .......+++|..... +.+ +....++||||+..
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~--~~l--~~~~~l~DTPGi~~ 222 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIE--IPL--DDGSFLYDTPGIIH 222 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEE--EEc--CCCcEEEECCCccc
Confidence 35799999999999999999986431 1111223444544332 223 22357999999974
No 362
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.30 E-value=2.9e-06 Score=83.69 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=85.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC---CCccccC-------------CCCCccceeEEEEeEEeeCCcEEEEEeCCC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILG---RRAFKAS-------------AGSSAITKTCEMKTTVLKDGQVVNVIDTPG 78 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~i~liDTPG 78 (371)
+.+...+|++.-+-.+||||+-+.++- ...--.. ....++|.......+.| ....+++|||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w-~~~~iNiIDTPG 113 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTW-RDYRINIIDTPG 113 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeee-ccceeEEecCCC
Confidence 334568999999999999999888752 2110000 00135565555556666 788999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..|+... ..+ ++.-.|+.++|+++..+.........+.++.. . .|-|..+||+|.++.
T Consensus 114 HvDFT~E-------VeR----ALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry---~--vP~i~FiNKmDRmGa 171 (721)
T KOG0465|consen 114 HVDFTFE-------VER----ALRVLDGAVLVLDAVAGVESQTETVWRQMKRY---N--VPRICFINKMDRMGA 171 (721)
T ss_pred ceeEEEE-------ehh----hhhhccCeEEEEEcccceehhhHHHHHHHHhc---C--CCeEEEEehhhhcCC
Confidence 9986432 222 33345889999988877777777777777765 2 289999999999977
No 363
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=4.9e-06 Score=89.40 Aligned_cols=131 Identities=18% Similarity=0.255 Sum_probs=78.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCC-----CCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc----chHHHHH
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASA-----GSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA----ESEYVSK 91 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~-----~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~----~~~~~~~ 91 (371)
=.+|||++|+||||++... |...+-... .....|..|. +.-+...++|||.|-+-... .+...+.
T Consensus 127 Wy~viG~pgsGKTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-----wwf~deaVlIDtaGry~~q~s~~~~~~~~W~ 200 (1188)
T COG3523 127 WYMVIGPPGSGKTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-----WWFTDEAVLIDTAGRYITQDSADEVDRAEWL 200 (1188)
T ss_pred ceEEecCCCCCcchHHhcc-cccCcchhhhccccccCCCCcccC-----cccccceEEEcCCcceecccCcchhhHHHHH
Confidence 3688999999999987542 333322211 0111143333 32455678999999764432 1222334
Q ss_pred HHHHHHhh--hcCCceEEEEEEeCCCCCC--HHHH--------HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHH
Q 040649 92 EIAKCIGM--AKDGIHAVLLVFSVRSRFS--QEEE--------AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLED 159 (371)
Q Consensus 92 ei~~~~~~--~~~~~d~vl~v~d~~~~~~--~~~~--------~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~ 159 (371)
.+...+.. ....+++||+.+|+.+-.+ ..+. ..+..|...++... |+.|++||.|.+.. +++
T Consensus 201 ~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~--PVYl~lTk~Dll~G----F~e 274 (1188)
T COG3523 201 GFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARL--PVYLVLTKADLLPG----FEE 274 (1188)
T ss_pred HHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCC--ceEEEEeccccccc----HHH
Confidence 44444443 3457899999999863222 2222 22455666666555 99999999999843 666
Q ss_pred Hhcc
Q 040649 160 YLGL 163 (371)
Q Consensus 160 ~l~~ 163 (371)
|...
T Consensus 275 fF~~ 278 (1188)
T COG3523 275 FFGS 278 (1188)
T ss_pred HHhc
Confidence 6654
No 364
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.29 E-value=9.9e-06 Score=80.13 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..++|||++|+||||++..|++..
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 365
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=8.5e-06 Score=75.28 Aligned_cols=173 Identities=16% Similarity=0.180 Sum_probs=102.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc------c---cc-----CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA------F---KA-----SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~------~---~~-----~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+.|..+|+-+|+...|||||--+|+.... + .. .....++|.......+.. ..+.+.=+|+||..|
T Consensus 51 ~KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeT-a~RhYaH~DCPGHAD 129 (449)
T KOG0460|consen 51 DKPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYET-AKRHYAHTDCPGHAD 129 (449)
T ss_pred CCCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeec-cccccccCCCCchHH
Confidence 44678999999999999999988863211 1 00 011235555444333443 566778899999654
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+.+-+......-|+.|+|+.++++.-+..++-+-+.++ .|- +++++.+||.|.+++ ...-+.+
T Consensus 130 -----------YIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQ-VGV---~~ivvfiNKvD~V~d--~e~leLV 192 (449)
T KOG0460|consen 130 -----------YIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQ-VGV---KHIVVFINKVDLVDD--PEMLELV 192 (449)
T ss_pred -----------HHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHH-cCC---ceEEEEEecccccCC--HHHHHHH
Confidence 22222222234599999999987666666665544444 454 489999999999966 4444444
Q ss_pred cccCCchHHHHHHhcC---Cc-eEeecCc-----chhhHhhHHhHHHHHHHHHHHHhh
Q 040649 162 GLECPKPLKEILQLCD---NR-WVLFDNK-----TKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~---~r-~~~f~~~-----~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.- .+++++...+ .. ++.+..- ...+.-....|..|++.++..++.
T Consensus 193 Em----E~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~ 246 (449)
T KOG0460|consen 193 EM----EIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPT 246 (449)
T ss_pred HH----HHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCC
Confidence 32 3566666554 11 1111100 001111235588888888886664
No 366
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.29 E-value=4.6e-05 Score=80.15 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|++|+|||||++.|.|.
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 58999999999999999999876
No 367
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=1.1e-05 Score=67.08 Aligned_cols=116 Identities=11% Similarity=0.079 Sum_probs=69.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+++++|--++|||||++.|-......-.+..++++. .... .+-.++.+|.-|... . ....
T Consensus 19 K~gKllFlGLDNAGKTTLLHMLKdDrl~qhvPTlHPTSE-----~l~I-g~m~ftt~DLGGH~q-------A----rr~w 81 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSE-----ELSI-GGMTFTTFDLGGHLQ-------A----RRVW 81 (193)
T ss_pred cCceEEEEeecCCchhhHHHHHccccccccCCCcCCChH-----Hhee-cCceEEEEccccHHH-------H----HHHH
Confidence 345899999999999999999864433111111122211 1223 667889999988432 2 2333
Q ss_pred hhhcCCceEEEEEEeCC--CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 98 GMAKDGIHAVLLVFSVR--SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~--~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+++.+|+++|.+|+- +++.+.- .-++.+...- .-.+.|+++..||+|....
T Consensus 82 kdyf~~v~~iv~lvda~d~er~~es~-~eld~ll~~e-~la~vp~lilgnKId~p~a 136 (193)
T KOG0077|consen 82 KDYFPQVDAIVYLVDAYDQERFAESK-KELDALLSDE-SLATVPFLILGNKIDIPYA 136 (193)
T ss_pred HHHHhhhceeEeeeehhhHHHhHHHH-HHHHHHHhHH-HHhcCcceeecccccCCCc
Confidence 44556679999999986 3343322 2222222110 0123499999999998766
No 368
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.29 E-value=1.1e-05 Score=66.28 Aligned_cols=171 Identities=16% Similarity=0.131 Sum_probs=96.9
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSK 91 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ 91 (371)
+.++.-..+|+++|.+..|||||+-.-.|...-.......++. +....+.. .-.-.+.|+|.-|- +
T Consensus 14 a~~n~Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN--~mdkt~~i~~t~IsfSIwdlgG~-----------~ 80 (205)
T KOG1673|consen 14 AVSNLVSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVN--FMDKTVSIRGTDISFSIWDLGGQ-----------R 80 (205)
T ss_pred ccccceEEEEEeecccccCceeeehhhhcchhHHHHHHHhCcc--ceeeEEEecceEEEEEEEecCCc-----------H
Confidence 3344456899999999999999987777665421111111221 11111111 12235789998883 2
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
++...+..+..++-+++|++|.+.+.+-.. +..+.+...|....---|+|.||-|.+-.-+..+..-+.. ....
T Consensus 81 ~~~n~lPiac~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~----qar~ 154 (205)
T KOG1673|consen 81 EFINMLPIACKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISR----QARK 154 (205)
T ss_pred hhhccCceeecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHH----HHHH
Confidence 456666777778889999999995544332 3344444444332224567899999763322233322221 2445
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+....+...+.- |+...-+++.++..+..-+
T Consensus 155 YAk~mnAsL~F~------Sts~sINv~KIFK~vlAkl 185 (205)
T KOG1673|consen 155 YAKVMNASLFFC------STSHSINVQKIFKIVLAKL 185 (205)
T ss_pred HHHHhCCcEEEe------eccccccHHHHHHHHHHHH
Confidence 555555555442 3334467888888765433
No 369
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.28 E-value=2.1e-06 Score=73.84 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~~~~~ 56 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLYDPTS 56 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999876544
No 370
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.28 E-value=7.3e-06 Score=80.40 Aligned_cols=72 Identities=21% Similarity=0.177 Sum_probs=44.5
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.||||||.... +.....++..... ...+|.+++|+|++.+ . ..+..+.. |... ....-+|+||.|
T Consensus 176 ~DvVIIDTAGr~~~---d~~lm~El~~l~~--~~~pdevlLVvda~~g--q---~av~~a~~-F~~~-l~i~gvIlTKlD 243 (437)
T PRK00771 176 ADVIIVDTAGRHAL---EEDLIEEMKEIKE--AVKPDEVLLVIDATIG--Q---QAKNQAKA-FHEA-VGIGGIIITKLD 243 (437)
T ss_pred CCEEEEECCCcccc---hHHHHHHHHHHHH--HhcccceeEEEecccc--H---HHHHHHHH-HHhc-CCCCEEEEeccc
Confidence 47899999997753 3444555555433 2357899999998743 2 23334433 3322 125678899999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 244 ~~a~ 247 (437)
T PRK00771 244 GTAK 247 (437)
T ss_pred CCCc
Confidence 7643
No 371
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.28 E-value=4.2e-06 Score=74.77 Aligned_cols=30 Identities=30% Similarity=0.333 Sum_probs=26.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+-.|.++|+||||||||+|.|.|...+.++
T Consensus 29 GEfvsilGpSGcGKSTLLriiAGL~~p~~G 58 (248)
T COG1116 29 GEFVAILGPSGCGKSTLLRLIAGLEKPTSG 58 (248)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 468999999999999999999999887664
No 372
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.27 E-value=1.2e-05 Score=77.68 Aligned_cols=123 Identities=17% Similarity=0.182 Sum_probs=66.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc-------cC---CCC---------------CccceeEEEEeE------EeeC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-------AS---AGS---------------SAITKTCEMKTT------VLKD 67 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~-------~~---~~~---------------~~~t~~~~~~~~------~~~~ 67 (371)
+..|+++|++|+||||++..|+...... .. ..+ .++......... ....
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 4689999999999999998876321100 00 000 011110000000 0013
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...+.... ..+-+++|+|++.. ..+. .+.+... .. ..+.-+|+||.
T Consensus 254 ~~DlVLIDTaGr~~~---~~~~l~el~~~l~~~~-~~~e~~LVlsat~~--~~~~--~~~~~~~-~~--~~~~~~I~TKl 322 (388)
T PRK12723 254 DFDLVLVDTIGKSPK---DFMKLAEMKELLNACG-RDAEFHLAVSSTTK--TSDV--KEIFHQF-SP--FSYKTVIFTKL 322 (388)
T ss_pred CCCEEEEcCCCCCcc---CHHHHHHHHHHHHhcC-CCCeEEEEEcCCCC--HHHH--HHHHHHh-cC--CCCCEEEEEec
Confidence 567999999998753 2222344555544332 23468899999843 2222 2333333 21 12677899999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 323 Det~~ 327 (388)
T PRK12723 323 DETTC 327 (388)
T ss_pred cCCCc
Confidence 97644
No 373
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.27 E-value=4.6e-06 Score=70.78 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++++|..|+|||||++.+++.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~ 23 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTE 23 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhc
Confidence 5789999999999999998865
No 374
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.26 E-value=2.5e-06 Score=78.05 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=46.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc----cccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA----FKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES 86 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~----~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~ 86 (371)
+....+.|+|-||+|||||||++..... .......+++|...... +.+.+...++++||||+..++..+
T Consensus 141 ~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~rp~vy~iDTPGil~P~I~~ 213 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHRPPVYLIDTPGILVPSIVD 213 (335)
T ss_pred CCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccCCceEEecCCCcCCCCCCC
Confidence 4568999999999999999999753321 11112234566554432 223367789999999998775544
No 375
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.23 E-value=9.2e-06 Score=74.75 Aligned_cols=144 Identities=19% Similarity=0.197 Sum_probs=78.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc---ccC-CCC--C-----------ccceeEEEEeEE-----------e--eC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF---KAS-AGS--S-----------AITKTCEMKTTV-----------L--KD 67 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~---~~~-~~~--~-----------~~t~~~~~~~~~-----------~--~~ 67 (371)
+..+++|+|++|+||||++..|++.... ..+ ... . .....+...... . ..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 4479999999999999999988754210 000 000 0 000000000000 0 02
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...+... .++.+++|+|++. ...+ ....++. |.. ..+--+|+||.
T Consensus 154 ~~D~ViIDt~Gr~~~---~~~~l~el~~~~~~~--~~~~~~LVl~a~~--~~~d--~~~~~~~-f~~--~~~~~~I~TKl 221 (270)
T PRK06731 154 RVDYILIDTAGKNYR---ASETVEEMIETMGQV--EPDYICLTLSASM--KSKD--MIEIITN-FKD--IHIDGIVFTKF 221 (270)
T ss_pred CCCEEEEECCCCCcC---CHHHHHHHHHHHhhh--CCCeEEEEEcCcc--CHHH--HHHHHHH-hCC--CCCCEEEEEee
Confidence 457899999997643 233455555554432 5678999999872 2222 2223332 322 23677899999
Q ss_pred CCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 148 DDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 148 D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
|....-+. +-.+....+.++.++.+-
T Consensus 222 Det~~~G~-------------~l~~~~~~~~Pi~~it~G 247 (270)
T PRK06731 222 DETASSGE-------------LLKIPAVSSAPIVLMTDG 247 (270)
T ss_pred cCCCCccH-------------HHHHHHHHCcCEEEEeCC
Confidence 97744221 222444456666666543
No 376
>PRK10867 signal recognition particle protein; Provisional
Probab=98.20 E-value=1.5e-05 Score=78.11 Aligned_cols=71 Identities=20% Similarity=0.216 Sum_probs=42.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++...... -.++.+++|+|+.. ..........+...+ ...-+|+||.
T Consensus 183 ~~DvVIIDTaGrl~~---d~~lm~eL~~i~~~--v~p~evllVlda~~--gq~av~~a~~F~~~~-----~i~giIlTKl 250 (433)
T PRK10867 183 GYDVVIVDTAGRLHI---DEELMDELKAIKAA--VNPDEILLVVDAMT--GQDAVNTAKAFNEAL-----GLTGVILTKL 250 (433)
T ss_pred CCCEEEEeCCCCccc---CHHHHHHHHHHHHh--hCCCeEEEEEeccc--HHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 357899999997643 33344444444332 25778899999752 222233333333222 2567888999
Q ss_pred CCC
Q 040649 148 DDL 150 (371)
Q Consensus 148 D~~ 150 (371)
|..
T Consensus 251 D~~ 253 (433)
T PRK10867 251 DGD 253 (433)
T ss_pred cCc
Confidence 965
No 377
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.18 E-value=6.3e-05 Score=71.91 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=48.1
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCCCC--
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLFGKKI-- 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~~~~~-- 136 (371)
++..+.++|..|-.. ..+.+..++.++++|+||+|.++- ....-...+..+..++..+.
T Consensus 182 ~~~~~~~~DvgGqr~-----------~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~ 250 (342)
T smart00275 182 KKLFFRMFDVGGQRS-----------ERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFA 250 (342)
T ss_pred CCeEEEEEecCCchh-----------hhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCcccc
Confidence 455678888888432 222334456788999999998731 12233455566666665442
Q ss_pred CCeEEEEEeCCCCCC
Q 040649 137 FDYMIVVFTGGDDLE 151 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~ 151 (371)
..|++|++||.|.+.
T Consensus 251 ~~piil~~NK~D~~~ 265 (342)
T smart00275 251 NTSIILFLNKIDLFE 265 (342)
T ss_pred CCcEEEEEecHHhHH
Confidence 259999999999763
No 378
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.18 E-value=7.1e-05 Score=70.91 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=48.5
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHhCCCC--
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLFGKKI-- 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~~~~~-- 136 (371)
++..+.++|++|-.. ....+..++.++++|+||+|.++. ....-...+..+..++..+.
T Consensus 159 ~~~~~~~~DvgGq~~-----------~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~ 227 (317)
T cd00066 159 KNLKFRMFDVGGQRS-----------ERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFA 227 (317)
T ss_pred cceEEEEECCCCCcc-----------cchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCcccc
Confidence 566788999999432 222333456788999999998731 12333445556666555432
Q ss_pred CCeEEEEEeCCCCCC
Q 040649 137 FDYMIVVFTGGDDLE 151 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~ 151 (371)
..|+++++||.|.+.
T Consensus 228 ~~pill~~NK~D~f~ 242 (317)
T cd00066 228 NTSIILFLNKKDLFE 242 (317)
T ss_pred CCCEEEEccChHHHH
Confidence 259999999999663
No 379
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.17 E-value=2.2e-05 Score=67.56 Aligned_cols=121 Identities=16% Similarity=0.109 Sum_probs=60.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE---eEEeeCCcEEEEEeCCCCCCCCcchHHH-----
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK---TTVLKDGQVVNVIDTPGLFDSSAESEYV----- 89 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~i~liDTPG~~~~~~~~~~~----- 89 (371)
++..++|+|++|+|||||++.|+|...+.++. ++...... .... .....++...|.++......+.+
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~----i~~~g~~~~~~~~~~-~~~i~~~~q~~~~~~~~tv~~~~~LS~G 99 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGLLKPDSGE----IKVLGKDIKKEPEEV-KRRIGYLPEEPSLYENLTVRENLKLSGG 99 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE----EEECCEEcccchHhh-hccEEEEecCCccccCCcHHHHhhcCHH
Confidence 34689999999999999999999987544321 11110000 0011 12344556666665421111111
Q ss_pred HHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 90 SKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 90 ~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
...-..........|+++|+--+.. .+.... ..+++.+...... ..+++++||.
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~-~LD~~~~~~l~~~l~~~~~~---g~tiii~th~ 154 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTS-GLDPESRREFWELLRELKKE---GKTILLSSHI 154 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcc-CCCHHHHHHHHHHHHHHHHC---CCEEEEECCC
Confidence 0112222233345677777644433 454444 3334444443222 2577777764
No 380
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.16 E-value=2.9e-05 Score=76.06 Aligned_cols=71 Identities=23% Similarity=0.212 Sum_probs=42.9
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||||.... +.....++..... .-.+|.+++|+|+.. ..........+...+ ...-+|+||.
T Consensus 182 ~~DvVIIDTaGr~~~---d~~l~~eL~~i~~--~~~p~e~lLVvda~t--gq~~~~~a~~f~~~v-----~i~giIlTKl 249 (428)
T TIGR00959 182 GFDVVIVDTAGRLQI---DEELMEELAAIKE--ILNPDEILLVVDAMT--GQDAVNTAKTFNERL-----GLTGVVLTKL 249 (428)
T ss_pred CCCEEEEeCCCcccc---CHHHHHHHHHHHH--hhCCceEEEEEeccc--hHHHHHHHHHHHhhC-----CCCEEEEeCc
Confidence 456899999997642 2334444544433 225788999999862 222233333333332 2567889999
Q ss_pred CCC
Q 040649 148 DDL 150 (371)
Q Consensus 148 D~~ 150 (371)
|..
T Consensus 250 D~~ 252 (428)
T TIGR00959 250 DGD 252 (428)
T ss_pred cCc
Confidence 965
No 381
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.15 E-value=1.3e-05 Score=69.00 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (173)
T cd03246 27 PGESLAIIGPSGSGKSTLARLILGLLRPTS 56 (173)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 345899999999999999999999876544
No 382
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.15 E-value=2.1e-05 Score=65.60 Aligned_cols=29 Identities=31% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
++..++|+|++|+|||||+++|+|...+.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~ 53 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGELEPD 53 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCCCCCC
Confidence 34689999999999999999999987543
No 383
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=98.14 E-value=1.5e-05 Score=68.91 Aligned_cols=31 Identities=16% Similarity=0.321 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.++..++|+|++|+|||||++.|+|...+.+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 53 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNG 53 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCC
Confidence 3456899999999999999999999876544
No 384
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.13 E-value=1.2e-05 Score=72.60 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=25.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+||+|+|||||+++|+|...+.++
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G 59 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSG 59 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 358899999999999999999997665543
No 385
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.13 E-value=1.8e-05 Score=67.49 Aligned_cols=30 Identities=27% Similarity=0.290 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~ 54 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDS 54 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 446899999999999999999999876544
No 386
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.11 E-value=1e-05 Score=75.80 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=38.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEe---EEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKT---TVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~---~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++|+|++|||||||+++|+|...+.++ .+........ ..+ ..+..++.+.|.+++.
T Consensus 31 Gei~gllG~NGAGKTTllk~l~gl~~p~~G----~i~i~G~~~~~~~~~~-~~~igy~~~~~~~~~~ 92 (293)
T COG1131 31 GEIFGLLGPNGAGKTTLLKILAGLLKPTSG----EILVLGYDVVKEPAKV-RRRIGYVPQEPSLYPE 92 (293)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCcCCCce----EEEEcCEeCccCHHHH-HhheEEEccCCCCCcc
Confidence 468999999999999999999998876442 2221111100 011 2346778888887653
No 387
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=1.5e-05 Score=67.72 Aligned_cols=118 Identities=20% Similarity=0.144 Sum_probs=74.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--eCC-cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--KDG-QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--~~~-~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.+...++++|..|.||||+++..+-...-.. ...|.....+...+ ..| ..+.++||.|..-..+-
T Consensus 8 ~~~fklvlvGdgg~gKtt~vkr~ltgeFe~~----y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~ggl-------- 75 (216)
T KOG0096|consen 8 GLTFKLVLVGDGGTGKTTFVKRHLTGEFEKT----YPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGL-------- 75 (216)
T ss_pred cceEEEEEecCCcccccchhhhhhcccceec----ccCcceeEEeeeeeecccCcEEEEeeecccceeeccc--------
Confidence 3568899999999999999998775554222 12222233332222 123 47899999985432111
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
-.-++-...+.++++|+..+++-.. ..+-+.+...+++ + |+++..||.|....
T Consensus 76 ---rdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~N-i--Piv~cGNKvDi~~r 129 (216)
T KOG0096|consen 76 ---RDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVREN-I--PIVLCGNKVDIKAR 129 (216)
T ss_pred ---ccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcC-C--Ceeeeccceecccc
Confidence 1112334568888999987776554 3344556666665 3 99999999996543
No 388
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.08 E-value=5.4e-05 Score=71.15 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=77.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-CCCccccCCCC-----------CccceeEEEEeEEeeC-----------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL-GRRAFKASAGS-----------SAITKTCEMKTTVLKD----------------- 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~-g~~~~~~~~~~-----------~~~t~~~~~~~~~~~~----------------- 67 (371)
++...|++.|+...|||||.-+|+ |...-..+... .+.|....+..+.+.+
T Consensus 115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~ 194 (527)
T COG5258 115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA 194 (527)
T ss_pred CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence 345889999999999999997765 43321111000 1222222222222211
Q ss_pred -----CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEE
Q 040649 68 -----GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIV 142 (371)
Q Consensus 68 -----~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (371)
++.+.++||-|.-.. +...+... .-..+|-.++++-++++.+...++-+-.+..+ .. |+|+
T Consensus 195 vv~~aDklVsfVDtvGHEpw------LrTtirGL---~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~---~l--PviV 260 (527)
T COG5258 195 VVKRADKLVSFVDTVGHEPW------LRTTIRGL---LGQKVDYGLLVVAADDGVTKMTKEHLGIALAM---EL--PVIV 260 (527)
T ss_pred hhhhcccEEEEEecCCccHH------HHHHHHHH---hccccceEEEEEEccCCcchhhhHhhhhhhhh---cC--CEEE
Confidence 245789999885431 22222222 23467999999999877776666555444432 22 9999
Q ss_pred EEeCCCCCCCchhhHHHHhc
Q 040649 143 VFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 143 v~tk~D~~~~~~~~l~~~l~ 162 (371)
|+||+|...+ +.+...+.
T Consensus 261 vvTK~D~~~d--dr~~~v~~ 278 (527)
T COG5258 261 VVTKIDMVPD--DRFQGVVE 278 (527)
T ss_pred EEEecccCcH--HHHHHHHH
Confidence 9999999877 44444443
No 389
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.08 E-value=2.9e-05 Score=73.21 Aligned_cols=30 Identities=37% Similarity=0.395 Sum_probs=26.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+-.++++||||||||||++.|+|...+.++
T Consensus 29 Gef~vllGPSGcGKSTlLr~IAGLe~~~~G 58 (338)
T COG3839 29 GEFVVLLGPSGCGKSTLLRMIAGLEEPTSG 58 (338)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 357999999999999999999999987664
No 390
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.07 E-value=5e-06 Score=74.07 Aligned_cols=107 Identities=17% Similarity=0.256 Sum_probs=69.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.++.++|.|++||||++.-++|..... .+..+.| -..........+..+.+.|.||+.+...+....+++.....
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~~s~v--asyeftt-l~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qviava-- 134 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGTFSEV--AAYEFTT-LTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIAVA-- 134 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCCCCcc--cccccee-EEEecceEeccccceeeecCcchhcccccCCCCccEEEEEe--
Confidence 489999999999999999999876532 2233333 23333333238889999999999876544333333333332
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK 135 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~ 135 (371)
..++++++|+|+-.|++ .+.+++.-.+-||-.
T Consensus 135 --rtcnli~~vld~~kp~~--hk~~ie~eleg~gir 166 (358)
T KOG1487|consen 135 --RTCNLIFIVLDVLKPLS--HKKIIEKELEGFGIR 166 (358)
T ss_pred --ecccEEEEEeeccCccc--HHHHHHHhhhcceee
Confidence 34589999999986665 345555555555543
No 391
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.06 E-value=2e-05 Score=75.61 Aligned_cols=73 Identities=21% Similarity=0.199 Sum_probs=49.0
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.||||.|-... ++....++...-. .-.||-+|||+|+.. ...-....+.+.+.++ -.=+|+||.
T Consensus 182 ~~DvvIvDTAGRl~i---de~Lm~El~~Ik~--~~~P~E~llVvDam~--GQdA~~~A~aF~e~l~-----itGvIlTKl 249 (451)
T COG0541 182 GYDVVIVDTAGRLHI---DEELMDELKEIKE--VINPDETLLVVDAMI--GQDAVNTAKAFNEALG-----ITGVILTKL 249 (451)
T ss_pred CCCEEEEeCCCcccc---cHHHHHHHHHHHh--hcCCCeEEEEEeccc--chHHHHHHHHHhhhcC-----CceEEEEcc
Confidence 357999999997653 4556666665543 347899999999872 3333445555555543 566889999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 250 DGdaR 254 (451)
T COG0541 250 DGDAR 254 (451)
T ss_pred cCCCc
Confidence 96543
No 392
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.05 E-value=7.8e-06 Score=70.75 Aligned_cols=30 Identities=30% Similarity=0.428 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~ 56 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDLKPQQ 56 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCC
Confidence 346899999999999999999999876544
No 393
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=98.05 E-value=8.4e-05 Score=63.54 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 55 (166)
T cd03223 26 PGDRLLITGPSGTGKSSLFRALAGLWPWGS 55 (166)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 446899999999999999999999876544
No 394
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.04 E-value=8.5e-06 Score=82.78 Aligned_cols=31 Identities=26% Similarity=0.250 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|||||||++.|+|...+.++
T Consensus 360 ~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G 390 (529)
T TIGR02868 360 PGERVAILGPSGSGKSTLLMLLTGLLDPLQG 390 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 5678999999999999999999998776553
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.04 E-value=3.2e-05 Score=67.16 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLRPPAS 54 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876544
No 396
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.03 E-value=0.00013 Score=62.77 Aligned_cols=73 Identities=22% Similarity=0.204 Sum_probs=41.9
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
+..+.|+||||.... .......+..... ...++.+++|+++... ......+..+....+ ...+|+||.
T Consensus 82 ~~d~viiDt~g~~~~---~~~~l~~l~~l~~--~~~~~~~~lVv~~~~~--~~~~~~~~~~~~~~~-----~~~viltk~ 149 (173)
T cd03115 82 NFDVVIVDTAGRLQI---DENLMEELKKIKR--VVKPDEVLLVVDAMTG--QDAVNQAKAFNEALG-----ITGVILTKL 149 (173)
T ss_pred CCCEEEEECcccchh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--hHHHHHHHHHHhhCC-----CCEEEEECC
Confidence 456889999997642 1222333332222 1247999999998632 222333333333333 467888999
Q ss_pred CCCCC
Q 040649 148 DDLED 152 (371)
Q Consensus 148 D~~~~ 152 (371)
|....
T Consensus 150 D~~~~ 154 (173)
T cd03115 150 DGDAR 154 (173)
T ss_pred cCCCC
Confidence 97754
No 397
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.03 E-value=1.2e-05 Score=69.04 Aligned_cols=58 Identities=21% Similarity=0.197 Sum_probs=36.4
Q ss_pred CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 136 IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 136 ~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+..-=++|+||.|+..-.+.+++.+... .+.+- +...+.| .+.++++|++++++++..
T Consensus 141 i~~aDllVInK~DLa~~v~~dlevm~~d-----a~~~n---p~~~ii~-----~n~ktg~G~~~~~~~i~~ 198 (202)
T COG0378 141 IFKADLLVINKTDLAPYVGADLEVMARD-----AKEVN---PEAPIIF-----TNLKTGEGLDEWLRFIEP 198 (202)
T ss_pred eeEeeEEEEehHHhHHHhCccHHHHHHH-----HHHhC---CCCCEEE-----EeCCCCcCHHHHHHHHHh
Confidence 3345678999999875544455544443 33332 3444443 455678999999988764
No 398
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.00 E-value=3e-05 Score=72.49 Aligned_cols=142 Identities=20% Similarity=0.187 Sum_probs=84.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-------------CccceeEEEEeEE---------ee----------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-------------SAITKTCEMKTTV---------LK---------- 66 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------------~~~t~~~~~~~~~---------~~---------- 66 (371)
..+|+++|-..+|||||+-.|+.... +.+... .+-|......... +.
T Consensus 167 evRvAVlGg~D~GKSTLlGVLTQgeL-DnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 167 EVRVAVLGGCDVGKSTLLGVLTQGEL-DNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEEecCcccCcceeeeeeecccc-cCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 57999999999999999988874432 111110 0111100000000 00
Q ss_pred -CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 67 -DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 67 -~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
...-+++||..|.... .+.... .+.-..||..++|++++.+++....+-+-.+..+ ++ |+++++|
T Consensus 246 ~SSKlvTfiDLAGh~kY-------~~TTi~--gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL---~i--PfFvlvt 311 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKY-------QKTTIH--GLTGYTPHFACLVVSADRGITWTTREHLGLIAAL---NI--PFFVLVT 311 (591)
T ss_pred hhcceEEEeecccchhh-------heeeee--ecccCCCceEEEEEEcCCCCccccHHHHHHHHHh---CC--CeEEEEE
Confidence 1234677777774321 000000 1122358999999999988888877777777665 33 9999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEe
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVL 182 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~ 182 (371)
|+|.... ..++..+.+ +..++...|-+.++
T Consensus 312 K~Dl~~~--~~~~~tv~~-----l~nll~~~Gc~kvp 341 (591)
T KOG1143|consen 312 KMDLVDR--QGLKKTVKD-----LSNLLAKAGCTKVP 341 (591)
T ss_pred eeccccc--hhHHHHHHH-----HHHHHhhcCccccc
Confidence 9998877 666666655 55666655544333
No 399
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.99 E-value=3.8e-05 Score=67.15 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++++||||||||||+++|.+...++++
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G 57 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG 57 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCcCCCCc
Confidence 4568999999999999999999999887764
No 400
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=97.98 E-value=0.002 Score=68.12 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=18.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..++|.|++++||||++.++.
T Consensus 328 ~~~iITGpN~gGKTt~lktig 348 (782)
T PRK00409 328 TVLVITGPNTGGKTVTLKTLG 348 (782)
T ss_pred eEEEEECCCCCCcHHHHHHHH
Confidence 568999999999999999875
No 401
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=97.98 E-value=9.8e-05 Score=64.82 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|+|..
T Consensus 34 ~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 34 PGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999999987
No 402
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.97 E-value=0.00012 Score=65.23 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 65 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGLLHVES 65 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876544
No 403
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.95 E-value=3.7e-05 Score=71.50 Aligned_cols=124 Identities=20% Similarity=0.290 Sum_probs=69.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC------Cc-------cccCC--------CCCccceeEEEEe-----EEe-----
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGR------RA-------FKASA--------GSSAITKTCEMKT-----TVL----- 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~------~~-------~~~~~--------~~~~~t~~~~~~~-----~~~----- 65 (371)
+.+..|++||-+|+||||.|--|+.. .+ |..+. ...++......+. +.+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~ 216 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA 216 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence 34678999999999999999877532 11 11000 0001111110000 000
Q ss_pred --eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh---c-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe
Q 040649 66 --KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA---K-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 66 --~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~---~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
..+..+.+|||.|-..+ ...++.++.+..... . ..||-+++|+|+..+ ..-..-.+.+.+..+ -
T Consensus 217 Akar~~DvvliDTAGRLhn---k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG--qnal~QAk~F~eav~-----l 286 (340)
T COG0552 217 AKARGIDVVLIDTAGRLHN---KKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG--QNALSQAKIFNEAVG-----L 286 (340)
T ss_pred HHHcCCCEEEEeCcccccC---chhHHHHHHHHHHHhccccCCCCceEEEEEEcccC--hhHHHHHHHHHHhcC-----C
Confidence 13457999999997754 334555555444332 2 247889999999833 223334455555544 4
Q ss_pred EEEEEeCCCCC
Q 040649 140 MIVVFTGGDDL 150 (371)
Q Consensus 140 ~ilv~tk~D~~ 150 (371)
.-+|+||+|..
T Consensus 287 ~GiIlTKlDgt 297 (340)
T COG0552 287 DGIILTKLDGT 297 (340)
T ss_pred ceEEEEecccC
Confidence 56789999944
No 404
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.4e-05 Score=76.49 Aligned_cols=31 Identities=32% Similarity=0.379 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..+++||+||||||||+|.|+|...+..+
T Consensus 346 ~g~~talvG~SGaGKSTLl~lL~G~~~~~~G 376 (559)
T COG4988 346 AGQLTALVGASGAGKSTLLNLLLGFLAPTQG 376 (559)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcCCCCCc
Confidence 4578999999999999999999998875543
No 405
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=97.92 E-value=5.6e-05 Score=66.72 Aligned_cols=26 Identities=31% Similarity=0.569 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|+|..
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGHP 50 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999999984
No 406
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.92 E-value=3.6e-05 Score=68.46 Aligned_cols=27 Identities=22% Similarity=0.210 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 53 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLTPPSS 53 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 899999999999999999999866544
No 407
>PRK01889 GTPase RsgA; Reviewed
Probab=97.91 E-value=9.3e-06 Score=78.08 Aligned_cols=59 Identities=37% Similarity=0.470 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----Cc-cceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SA-ITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~-~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+.+++|+|.+|+|||||+|.|+|...+.++... +. .|..... ..+ .+ ...++||||+..
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l--~~l-~~-~~~l~DtpG~~~ 259 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHREL--HPL-PS-GGLLIDTPGMRE 259 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccE--EEe-cC-CCeecCCCchhh
Confidence 468999999999999999999997765443211 11 1211111 222 22 236889999754
No 408
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.90 E-value=1.9e-05 Score=81.24 Aligned_cols=29 Identities=28% Similarity=0.426 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++++|++|+|||||++.|+|.. +.+
T Consensus 375 ~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 375 AGQRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 56789999999999999999999987 544
No 409
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.88 E-value=2.5e-05 Score=80.38 Aligned_cols=31 Identities=29% Similarity=0.288 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..|+|+|++|+|||||++.|+|...+.++
T Consensus 360 ~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G 390 (588)
T PRK13657 360 PGQTVAIVGPTGAGKSTLINLLQRVFDPQSG 390 (588)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4578999999999999999999998876553
No 410
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=97.87 E-value=4e-05 Score=67.93 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||+++|+|...+.+
T Consensus 33 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 62 (207)
T cd03369 33 AGEKIGIVGRTGAGKSTLILALFRFLEAEE 62 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 446899999999999999999999876544
No 411
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=0.0002 Score=62.76 Aligned_cols=26 Identities=27% Similarity=0.524 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|+|..
T Consensus 32 ~Ge~~~l~G~nGsGKSTLl~~l~G~~ 57 (192)
T cd03232 32 PGTLTALMGESGAGKTTLLDVLAGRK 57 (192)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999964
No 412
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.85 E-value=2.6e-05 Score=71.12 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=93.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc--cC---------------------------------CCCCccceeEEEEe
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--AS---------------------------------AGSSAITKTCEMKT 62 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~--~~---------------------------------~~~~~~t~~~~~~~ 62 (371)
...+|+-+|+...||||++++|.|..... .. .+.......|....
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g 116 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPG 116 (466)
T ss_pred eeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCC
Confidence 35789999999999999999998854211 00 00000011111111
Q ss_pred EE--eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC----CCCHHHHHHHHHHHHHhCCCC
Q 040649 63 TV--LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS----RFSQEEEAAVHRLQTLFGKKI 136 (371)
Q Consensus 63 ~~--~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~----~~~~~~~~~l~~l~~~~~~~~ 136 (371)
+. +.--+.+.++|.||.+- +...+..- ..-.|+.++.+-+++ |-+.+....++.++-
T Consensus 117 ~~~~~klvRHVSfVDCPGHDi-------LMaTMLnG----aAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~L------ 179 (466)
T KOG0466|consen 117 CEGKMKLVRHVSFVDCPGHDI-------LMATMLNG----AAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKL------ 179 (466)
T ss_pred CCCceEEEEEEEeccCCchHH-------HHHHHhcc----hHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhh------
Confidence 10 00113578999999541 22212211 112377888887663 333444444444432
Q ss_pred CCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 137 FDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
++++++-||+|+..+. ..++++-. ++.++... ...-.+..+.||+-+.+++-+.++|..-++....
T Consensus 180 -khiiilQNKiDli~e~-~A~eq~e~------I~kFi~~t---~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvR 245 (466)
T KOG0466|consen 180 -KHIIILQNKIDLIKES-QALEQHEQ------IQKFIQGT---VAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVR 245 (466)
T ss_pred -ceEEEEechhhhhhHH-HHHHHHHH------HHHHHhcc---ccCCCceeeehhhhccChHHHHHHHHhcCCCCcc
Confidence 4999999999988662 22333221 44444321 1111122347888889999999999887775433
No 413
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.85 E-value=0.00016 Score=65.73 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=25.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++++||+|||||||+++|+|...+.++
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 468899999999999999999997765543
No 414
>PRK02224 chromosome segregation protein; Provisional
Probab=97.84 E-value=0.02 Score=61.90 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|++|+|||||+.+|+
T Consensus 24 g~~~i~G~Ng~GKStil~ai~ 44 (880)
T PRK02224 24 GVTVIHGVNGSGKSSLLEACF 44 (880)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356889999999999999964
No 415
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.83 E-value=0.00012 Score=61.81 Aligned_cols=27 Identities=33% Similarity=0.385 Sum_probs=23.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
+..++|+|++|+|||||+++|.|...+
T Consensus 25 g~~~~i~G~nGsGKStll~~l~g~~~~ 51 (157)
T cd00267 25 GEIVALVGPNGSGKSTLLRAIAGLLKP 51 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 358999999999999999999998653
No 416
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.83 E-value=0.0001 Score=70.54 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.+|++|||+|+|||||+..|+|...+..+
T Consensus 614 SRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 614 SRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred ceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 58999999999999999999998775543
No 417
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.82 E-value=3.1e-05 Score=79.80 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+|+++|++|+|||||++.|+|...+.+
T Consensus 366 ~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~ 395 (592)
T PRK10790 366 SRGFVALVGHTGSGKSTLASLLMGYYPLTE 395 (592)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCC
Confidence 457899999999999999999999887654
No 418
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=5.1e-05 Score=71.41 Aligned_cols=73 Identities=15% Similarity=0.149 Sum_probs=46.9
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.|+||.|-... ...+.+++..+... -.||.+|||+|++-+.. -..-...++...+ -.-+++||
T Consensus 182 e~fdvIIvDTSGRh~q---e~sLfeEM~~v~~a--i~Pd~vi~VmDasiGQa--ae~Qa~aFk~~vd-----vg~vIlTK 249 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQ---EASLFEEMKQVSKA--IKPDEIIFVMDASIGQA--AEAQARAFKETVD-----VGAVILTK 249 (483)
T ss_pred cCCcEEEEeCCCchhh---hHHHHHHHHHHHhh--cCCCeEEEEEeccccHh--HHHHHHHHHHhhc-----cceEEEEe
Confidence 3567999999997653 45566677666543 36999999999983332 2223334443322 45567888
Q ss_pred CCCCC
Q 040649 147 GDDLE 151 (371)
Q Consensus 147 ~D~~~ 151 (371)
.|...
T Consensus 250 lDGha 254 (483)
T KOG0780|consen 250 LDGHA 254 (483)
T ss_pred cccCC
Confidence 88663
No 419
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.82 E-value=0.00019 Score=66.09 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.+.+|+|+|.+|+||||||..|-|.+.+..
T Consensus 51 sgk~VlvlGdn~sGKtsLi~klqg~e~~Kk 80 (473)
T KOG3905|consen 51 SGKNVLVLGDNGSGKTSLISKLQGSETVKK 80 (473)
T ss_pred CCCeEEEEccCCCchhHHHHHhhcccccCC
Confidence 456899999999999999999999886544
No 420
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.82 E-value=0.00019 Score=63.42 Aligned_cols=23 Identities=30% Similarity=0.219 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.+++|+|++|+|||||+++|.+.
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 58999999999999999999843
No 421
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.81 E-value=4.4e-05 Score=77.60 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++++|++|+|||||++.|+|...+.+
T Consensus 347 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 376 (529)
T TIGR02857 347 PGERVALVGPSGAGKSTLLNLLLGFVDPTE 376 (529)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 567899999999999999999999887655
No 422
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.80 E-value=4.5e-05 Score=68.92 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (234)
T cd03251 27 AGETVALVGPSGSGKSTLVNLIPRFYDVDS 56 (234)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccccCCC
Confidence 345899999999999999999999876544
No 423
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=97.79 E-value=0.0011 Score=62.83 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=53.9
Q ss_pred EEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC--------CCCHHHHHHHHHHH
Q 040649 58 CEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS--------RFSQEEEAAVHRLQ 129 (371)
Q Consensus 58 ~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~--------~~~~~~~~~l~~l~ 129 (371)
.....+.+ .+..+.++|.+|--. -.+ -+..+..++++||||++.++ ..+.-..+.+..+.
T Consensus 185 I~e~~F~~-k~~~f~~~DvGGQRs-------eRr----KWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~ 252 (354)
T KOG0082|consen 185 IVEVEFTI-KGLKFRMFDVGGQRS-------ERK----KWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFE 252 (354)
T ss_pred eeEEEEEe-CCCceEEEeCCCcHH-------Hhh----hHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHH
Confidence 33344444 667889999999321 111 22336889999999998762 22233355566666
Q ss_pred HHhCCCCC--CeEEEEEeCCCCCCC
Q 040649 130 TLFGKKIF--DYMIVVFTGGDDLED 152 (371)
Q Consensus 130 ~~~~~~~~--~~~ilv~tk~D~~~~ 152 (371)
..+..+++ .++|+++||.|++.+
T Consensus 253 sI~n~~~F~~tsiiLFLNK~DLFeE 277 (354)
T KOG0082|consen 253 SICNNKWFANTSIILFLNKKDLFEE 277 (354)
T ss_pred HHhcCcccccCcEEEEeecHHHHHH
Confidence 66665543 489999999998744
No 424
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=97.79 E-value=4.9e-05 Score=76.37 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-+|+|+|++|+|||||++.|+|...+.++
T Consensus 347 ~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 347 RGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 4569999999999999999999988776544
No 425
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.79 E-value=2.6e-05 Score=80.16 Aligned_cols=31 Identities=32% Similarity=0.493 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|++|+|||||++.|+|...+.++
T Consensus 368 ~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G 398 (582)
T PRK11176 368 AGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCc
Confidence 4568999999999999999999998876553
No 426
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.78 E-value=7.8e-05 Score=63.06 Aligned_cols=91 Identities=11% Similarity=0.062 Sum_probs=59.8
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.+...+|++++|+|++.++...+..+.+.+... .. ..|+++|+||+|.... ..+..++.. +-. ..
T Consensus 4 ~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~-~~--~~p~ilVlNKiDl~~~--~~~~~~~~~--------~~~-~~- 68 (157)
T cd01858 4 KVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKE-KP--HKHLIFVLNKCDLVPT--WVTARWVKI--------LSK-EY- 68 (157)
T ss_pred HhhhhCCEEEEEEECCCCccccCHHHHHHHHhc-cC--CCCEEEEEEchhcCCH--HHHHHHHHH--------Hhc-CC-
Confidence 345677999999999977766677777777643 21 2499999999998754 333333221 211 11
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+. ....|++++.++..|++.+....
T Consensus 69 ---~~~-~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 69 ---PTI-AFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred ---cEE-EEEeeccccccHHHHHHHHHHHH
Confidence 111 13467788899999999987664
No 427
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.78 E-value=3.8e-05 Score=78.80 Aligned_cols=31 Identities=35% Similarity=0.364 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|+|||||++.|+|...+.++
T Consensus 357 ~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G 387 (571)
T TIGR02203 357 PGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387 (571)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 4678999999999999999999998876553
No 428
>KOG2484 consensus GTPase [General function prediction only]
Probab=97.77 E-value=2.8e-05 Score=73.46 Aligned_cols=66 Identities=21% Similarity=0.325 Sum_probs=47.8
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~ 85 (371)
.....++++|+|-+++||||+||+|........+.. +++|...+. +. .+..+.|+|.||+...+.+
T Consensus 248 ~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~-pGvT~smqe--V~--Ldk~i~llDsPgiv~~~~~ 313 (435)
T KOG2484|consen 248 ELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNV-PGVTRSMQE--VK--LDKKIRLLDSPGIVPPSID 313 (435)
T ss_pred ccCcceEeeeecCCCCChhHHHHHHHHhccccCCCC-ccchhhhhh--ee--ccCCceeccCCceeecCCC
Confidence 345568999999999999999999998887555433 445544332 21 4567899999998865443
No 429
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.76 E-value=6.6e-05 Score=67.19 Aligned_cols=29 Identities=28% Similarity=0.392 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||++.|+|...+.+
T Consensus 30 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 58 (221)
T cd03244 30 GEKVGIVGRTGSGKSSLLLALFRLVELSS 58 (221)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 45899999999999999999999876544
No 430
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.74 E-value=0.00013 Score=61.07 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHhC
Q 040649 22 VVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g 41 (371)
|+++|++|+||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999988864
No 431
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=97.74 E-value=0.014 Score=63.34 Aligned_cols=28 Identities=18% Similarity=0.362 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHH----hCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSI----LGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L----~g~~~~~~ 47 (371)
|--++||++|+||||+|++| +|.-+|.+
T Consensus 28 PlTLIvG~NG~GKTTiIEcLKyatTG~lPpns 59 (1294)
T KOG0962|consen 28 PLTLIVGANGTGKTTIIECLKYATTGELPPNS 59 (1294)
T ss_pred CeeeEecCCCCCchhHHHHHHHHhcCcCCCCC
Confidence 34588999999999999986 45544433
No 432
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.74 E-value=2.3e-05 Score=66.68 Aligned_cols=31 Identities=32% Similarity=0.393 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.+.+++++|++|+|||||+|.|.|-..|.++
T Consensus 24 ~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G 54 (231)
T COG3840 24 AGEIVAILGPSGAGKSTLLNLIAGFETPASG 54 (231)
T ss_pred CCcEEEEECCCCccHHHHHHHHHhccCCCCc
Confidence 3468999999999999999999998887664
No 433
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=97.74 E-value=1.9e-05 Score=74.33 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
+.+.+-|+|||-+++||||+||+|-...+......+ +-|...++.. --+.|++||+||+...+.
T Consensus 304 dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIp-GETKVWQYIt----LmkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 304 DKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIP-GETKVWQYIT----LMKRIFLIDCPGVVYPSS 367 (572)
T ss_pred CccceeeeeecCCCCchHHHHHHHhhcccccccCCC-CcchHHHHHH----HHhceeEecCCCccCCCC
Confidence 456688999999999999999999988875443322 2333332221 345788999999986654
No 434
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.71 E-value=4.5e-05 Score=78.33 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|+|||||++.|+|...+.+
T Consensus 365 ~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~ 394 (576)
T TIGR02204 365 PGETVALVGPSGAGKSTLFQLLLRFYDPQS 394 (576)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 567899999999999999999999877554
No 435
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=97.71 E-value=7.9e-05 Score=78.18 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|||||||++.|+|...+.++
T Consensus 478 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 508 (686)
T TIGR03797 478 PGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508 (686)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4678999999999999999999998876553
No 436
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=0.00065 Score=60.76 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 58 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLERPTS 58 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999875443
No 437
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.0013 Score=54.89 Aligned_cols=117 Identities=13% Similarity=0.201 Sum_probs=65.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc---cccCCCCCccceeEEEEeEEeeCCc--EEEEEeCC----------CCCCC-
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA---FKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTP----------GLFDS- 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~---~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTP----------G~~~~- 82 (371)
..+|++.|+||+||||++..|..... +..+ +..|.... . +|. .+.|+|.. |+...
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvg---Gf~t~EVR-----~-gGkR~GF~Ivdl~tg~~~~la~~~~~~~r 75 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVG---GFITPEVR-----E-GGKRIGFKIVDLATGEEGILARVGFSRPR 75 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceee---eEEeeeee-----c-CCeEeeeEEEEccCCceEEEEEcCCCCcc
Confidence 47899999999999999988763221 1111 11111110 0 111 23444443 11111
Q ss_pred ----CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 83 ----SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 83 ----~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
...-+.+.+-....+..+...+|++++ |--.++......+.+.+.+.+.+. +|++.++.+-+
T Consensus 76 vGkY~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~--kpliatlHrrs 141 (179)
T COG1618 76 VGKYGVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSG--KPLIATLHRRS 141 (179)
T ss_pred cceEEeeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhccHHHHHHHHHHhcCC--CcEEEEEeccc
Confidence 112233444555666666667777665 322356555677777888877665 38887776655
No 438
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=97.70 E-value=2.3e-05 Score=80.47 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=82.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE--------------------------------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-------------------------------------- 60 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-------------------------------------- 60 (371)
-+.|+|||..++||||.++++.|..+.+-+.. .+|..+..
T Consensus 29 lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~g--ivTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e 106 (657)
T KOG0446|consen 29 LPQIVVVGGQSSGKSSVLESLVGFVFLPRGVG--IVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE 106 (657)
T ss_pred CCceEEecCCCCcchhHHHHhhcccccccccc--ceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence 36799999999999999999999876553321 11110000
Q ss_pred -----------------EeEEeeCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH
Q 040649 61 -----------------KTTVLKDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE 121 (371)
Q Consensus 61 -----------------~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~ 121 (371)
-.+...+-..+++||.||+..... ..++...++...+..+...++++++.+...+ ..-..
T Consensus 107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an-~d~at 185 (657)
T KOG0446|consen 107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPAN-SDIAT 185 (657)
T ss_pred HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccccchhhhhccchh-hhhhc
Confidence 000001123588999999986533 2356677788888888888898888775542 22223
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 122 EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+...++.-+.. ..++.|+||.|.++.
T Consensus 186 s~alkiarevDp~g--~RTigvitK~Dlmdk 214 (657)
T KOG0446|consen 186 SPALVVAREVDPGG--SRTLEVITKFDFMDK 214 (657)
T ss_pred CHHHHHHHhhCCCc--cchhHHhhhHHhhhc
Confidence 44556666653333 488999999997744
No 439
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.68 E-value=4.5e-05 Score=80.08 Aligned_cols=31 Identities=29% Similarity=0.398 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|+|||||++.|+|...+.++
T Consensus 490 ~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G 520 (694)
T TIGR03375 490 PGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998876553
No 440
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.68 E-value=0.00018 Score=67.62 Aligned_cols=30 Identities=37% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~ 56 (301)
T TIGR03522 27 KGRIVGFLGPNGAGKSTTMKIITGYLPPDS 56 (301)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999876544
No 441
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=0.00047 Score=62.21 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|+||||||||++.+.|...+.++
T Consensus 29 ~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G 59 (235)
T COG1122 29 KGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCcCcCCCC
Confidence 4568999999999999999999998876653
No 442
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.68 E-value=0.061 Score=58.39 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|+|||||||++.+|+
T Consensus 26 gi~lI~G~nGsGKSSIldAI~ 46 (908)
T COG0419 26 GIFLIVGPNGAGKSSILDAIT 46 (908)
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 577999999999999999975
No 443
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.68 E-value=0.00076 Score=59.45 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+++|+|++|+|||||++.|.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred eEEEEECCCCCChHHHHHHHH
Confidence 469999999999999999987
No 444
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=97.67 E-value=8.6e-05 Score=66.49 Aligned_cols=30 Identities=27% Similarity=0.298 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++++|+|||||||+++.|.+...+.++
T Consensus 27 gef~vliGpSGsGKTTtLkMINrLiept~G 56 (309)
T COG1125 27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSG 56 (309)
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCCCc
Confidence 457899999999999999999877665553
No 445
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=97.67 E-value=4.2e-05 Score=68.07 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.|+++|+||||||||+|.|.|.+.+.++
T Consensus 30 ~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G 60 (226)
T COG1136 30 AGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60 (226)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCc
Confidence 3468999999999999999999998886543
No 446
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.67 E-value=0.0007 Score=60.69 Aligned_cols=30 Identities=30% Similarity=0.263 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~ 54 (223)
T TIGR03740 25 KNSVYGLLGPNGAGKSTLLKMITGILRPTS 54 (223)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999865444
No 447
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=0.00051 Score=61.28 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.+-+|+++|++|||||||++.|.|...|++
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 457899999999999999999999988766
No 448
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=97.66 E-value=5.8e-05 Score=79.47 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+|+++|++|||||||++.|+|...+.+
T Consensus 504 ~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~ 533 (710)
T TIGR03796 504 PGQRVALVGGSGSGKSTIAKLVAGLYQPWS 533 (710)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 467999999999999999999999887655
No 449
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=97.65 E-value=0.0029 Score=66.56 Aligned_cols=58 Identities=21% Similarity=0.186 Sum_probs=34.6
Q ss_pred EcCCCCcHHHHHHHHhCCCccccCCC-CCccceeEEEEeEEe--eCCcEEEEEeCCCCCCC
Q 040649 25 LGRTGNGKSATGNSILGRRAFKASAG-SSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 25 vG~~GsGKSTlin~L~g~~~~~~~~~-~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~ 82 (371)
+|+-++|||||+|.|+|.....-... ...+|...-...... .....+.|+|+-|....
T Consensus 1 ~g~qssgkstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~d~~ 61 (742)
T PF05879_consen 1 FGSQSSGKSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGTDGR 61 (742)
T ss_pred CCCCCCcHHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCCCch
Confidence 59999999999999999886443221 112221111111110 12357789999997654
No 450
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.65 E-value=8.2e-05 Score=76.38 Aligned_cols=31 Identities=32% Similarity=0.342 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 365 ~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G 395 (574)
T PRK11160 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQG 395 (574)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998776553
No 451
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=97.65 E-value=0.0001 Score=77.49 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++++|++|+|||||++.|+|...+.+
T Consensus 506 ~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~ 535 (711)
T TIGR00958 506 PGEVVALVGPSGSGKSTVAALLQNLYQPTG 535 (711)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 567899999999999999999999877654
No 452
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=97.62 E-value=0.00087 Score=63.22 Aligned_cols=30 Identities=33% Similarity=0.375 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|+|||||++.|+|...+.+
T Consensus 32 ~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~ 61 (306)
T PRK13537 32 RGECFGLLGPNGAGKTTTLRMLLGLTHPDA 61 (306)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 345899999999999999999999876554
No 453
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.62 E-value=0.00043 Score=68.56 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
.+...|+|+|..|+|||||+..|.|.+.+
T Consensus 23 ~~~k~vlvlG~~~~GKttli~~L~~~e~~ 51 (472)
T PF05783_consen 23 PSEKSVLVLGDKGSGKTTLIARLQGIEDP 51 (472)
T ss_pred CCCceEEEEeCCCCchHHHHHHhhccCCC
Confidence 34579999999999999999999887653
No 454
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.62 E-value=0.00029 Score=60.79 Aligned_cols=24 Identities=38% Similarity=0.302 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++|+|+||+|||||++.+++
T Consensus 20 ~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 20 LNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhh
Confidence 346899999999999999999974
No 455
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.62 E-value=0.01 Score=66.83 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=19.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.++|+|++|+||||++.+|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999984
No 456
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.61 E-value=0.00099 Score=59.52 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
+-+.+|+|++|||||||++.++|...+.
T Consensus 57 ge~W~I~G~NGsGKTTLL~ll~~~~~ps 84 (257)
T COG1119 57 GEHWAIVGPNGAGKTTLLSLLTGEHPPS 84 (257)
T ss_pred CCcEEEECCCCCCHHHHHHHHhcccCCC
Confidence 3489999999999999999999988654
No 457
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.60 E-value=7.5e-05 Score=76.59 Aligned_cols=31 Identities=23% Similarity=0.204 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|++|+|||||++.|+|...+.++
T Consensus 340 ~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G 370 (569)
T PRK10789 340 PGQMLGICGPTGSGKSTLLSLIQRHFDVSEG 370 (569)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 5578999999999999999999998776553
No 458
>PRK03918 chromosome segregation protein; Provisional
Probab=97.59 E-value=0.072 Score=57.66 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.4
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
..+|+|++|+||||++.+|.
T Consensus 25 ~~~i~G~nG~GKStil~ai~ 44 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAIL 44 (880)
T ss_pred cEEEEcCCCCCHHHHHHHHH
Confidence 45799999999999999864
No 459
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=97.58 E-value=0.00048 Score=63.39 Aligned_cols=67 Identities=28% Similarity=0.279 Sum_probs=46.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC-ccccCCCCCccceeEEEEeEEe--eCCcEEEEEeCCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSAITKTCEMKTTVL--KDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~~~~~~~~t~~~~~~~~~~--~~~~~i~liDTPG~~~~ 82 (371)
..+...|.|+|+..+|||.|+|.|+|.. .|..+.+..++|.-.-...... ..+..+.++||.|+++.
T Consensus 18 ~~~v~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~~ 87 (260)
T PF02263_consen 18 DQPVAVVSIVGPYRTGKSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGDV 87 (260)
T ss_dssp TSBEEEEEEEEETTSSHHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTTT
T ss_pred CCCEEEEEeecCCccchHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhcccc
Confidence 4456789999999999999999999853 3444444445554433333222 23457999999999883
No 460
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.58 E-value=0.00052 Score=61.20 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|||||||.++|+|-..+.++
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G 62 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKPSSG 62 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCCCCc
Confidence 4578999999999999999999999886654
No 461
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.57 E-value=0.00027 Score=62.85 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=32.3
Q ss_pred CCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 3 ERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..+.++..+.-+ ++..++|+|+||+|||||+++|+|...+.++
T Consensus 20 ~~~Ild~v~l~V~--~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G 63 (263)
T COG1127 20 DRVILDGVDLDVP--RGEILAILGGSGSGKSTLLRLILGLLRPDKG 63 (263)
T ss_pred CEEEecCceeeec--CCcEEEEECCCCcCHHHHHHHHhccCCCCCC
Confidence 3344444443333 3467899999999999999999999887764
No 462
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.57 E-value=0.036 Score=59.11 Aligned_cols=19 Identities=37% Similarity=0.641 Sum_probs=17.3
Q ss_pred EEEEcCCCCcHHHHHHHHh
Q 040649 22 VVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~ 40 (371)
-+||||+|||||-+|.+++
T Consensus 111 taIvGPNGSGKSNVIDsmL 129 (1293)
T KOG0996|consen 111 TAIVGPNGSGKSNVIDSML 129 (1293)
T ss_pred eeeECCCCCCchHHHHHHH
Confidence 4789999999999999976
No 463
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.56 E-value=5.3e-05 Score=62.30 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||+++|+|...+.+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~~~~~ 39 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLLPPDS 39 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSSHESE
T ss_pred CCEEEEEccCCCccccceeeecccccccc
Confidence 45899999999999999999999887543
No 464
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.56 E-value=0.00014 Score=67.42 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++-.++|+|++|+|||||+++|+|...
T Consensus 29 ~Ge~~~IvG~nGsGKSTLl~~L~gl~~ 55 (275)
T cd03289 29 PGQRVGLLGRTGSGKSTLLSAFLRLLN 55 (275)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhhcC
Confidence 446899999999999999999999864
No 465
>PRK13695 putative NTPase; Provisional
Probab=97.56 E-value=0.0012 Score=56.80 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+|+|+|.+|+|||||+..|.+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999997654
No 466
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.55 E-value=8.9e-05 Score=78.05 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|||||||++.|+|...+.++
T Consensus 499 ~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G 529 (708)
T TIGR01193 499 MNSKTTIVGMSGSGKSTLAKLLVGFFQARSG 529 (708)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCCCCCc
Confidence 4578999999999999999999998776553
No 467
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.55 E-value=0.003 Score=62.37 Aligned_cols=171 Identities=15% Similarity=0.156 Sum_probs=84.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+...++|.||+||||||++..|+-...+.......++. +....... -+|-|..+...+.-...+.+....
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~--~~~~~~~h--------~~t~~~~~~~~s~L~~fesFler~ 178 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN--LKEPENLH--------NETSFLMFPYQSQLAVFESFLLRA 178 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc--cccccccc--------ccchhcccchhhHHHHHHHHHHHH
Confidence 34578999999999999999987443322211111111 11000000 112222221111111222222222
Q ss_pred ----hhhcCCce-----EEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCch
Q 040649 98 ----GMAKDGIH-----AVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKP 168 (371)
Q Consensus 98 ----~~~~~~~d-----~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~ 168 (371)
.....+-+ .+|+|-|.-+-+...+...++.+...+-...+.|+|+++|-+-..+.+ ..-..|
T Consensus 179 ~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~n-nq~rlf-------- 249 (634)
T KOG1970|consen 179 TKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNN-NQDRLF-------- 249 (634)
T ss_pred HhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCc-chhhhc--------
Confidence 11122333 357776765433333444444444444445566999999976543221 111111
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
...+-..++...+.|++... .-+...|..|+.......+
T Consensus 250 ~~d~q~~~ri~~IsFNPIa~------T~MKK~L~ric~~e~~~~s 288 (634)
T KOG1970|consen 250 PKDIQEEPRISNISFNPIAP------TIMKKFLKRICRIEANKKS 288 (634)
T ss_pred hhhhhhccCcceEeecCCcH------HHHHHHHHHHHHHhccccc
Confidence 23344677888888998865 4466667777766554433
No 468
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.55 E-value=0.00088 Score=68.54 Aligned_cols=30 Identities=23% Similarity=0.194 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-.++|+|++|||||||++.|+|...+.+
T Consensus 32 ~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~ 61 (556)
T PRK11819 32 PGAKIGVLGLNGAGKSTLLRIMAGVDKEFE 61 (556)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876543
No 469
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.53 E-value=0.00018 Score=74.08 Aligned_cols=30 Identities=27% Similarity=0.297 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|+|||||++.|+|...+.+
T Consensus 360 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~ 389 (585)
T TIGR01192 360 AGQTVAIVGPTGAGKTTLINLLQRVYDPTV 389 (585)
T ss_pred CCCEEEEECCCCCCHHHHHHHHccCCCCCC
Confidence 457899999999999999999999876554
No 470
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.53 E-value=1.6e-05 Score=70.77 Aligned_cols=31 Identities=29% Similarity=0.277 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++||+|+|||||+|.|+|...++++
T Consensus 29 ~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G 59 (250)
T COG0411 29 PGEIVGLIGPNGAGKTTLFNLITGFYKPSSG 59 (250)
T ss_pred CCeEEEEECCCCCCceeeeeeecccccCCCc
Confidence 3468999999999999999999998876653
No 471
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.53 E-value=0.00025 Score=59.81 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=55.2
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCce
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW 180 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~ 180 (371)
..++|++|+|+|++.+....+..+...+.. .+ .|+++|+||+|.... ..... +..+....+.++
T Consensus 10 ~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~-~~----~p~iiv~NK~Dl~~~--~~~~~---------~~~~~~~~~~~~ 73 (156)
T cd01859 10 IKESDVVLEVLDARDPELTRSRKLERYVLE-LG----KKLLIVLNKADLVPK--EVLEK---------WKSIKESEGIPV 73 (156)
T ss_pred HhhCCEEEEEeeCCCCcccCCHHHHHHHHh-CC----CcEEEEEEhHHhCCH--HHHHH---------HHHHHHhCCCcE
Confidence 445799999999986655555444433322 12 499999999997633 22211 111222222233
Q ss_pred EeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 181 VLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 181 ~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++ .|++++.|+++|++.+...++.
T Consensus 74 ~~------iSa~~~~gi~~L~~~l~~~~~~ 97 (156)
T cd01859 74 VY------VSAKERLGTKILRRTIKELAKI 97 (156)
T ss_pred EE------EEccccccHHHHHHHHHHHHhh
Confidence 33 5777889999999999988765
No 472
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.52 E-value=0.0002 Score=74.50 Aligned_cols=31 Identities=29% Similarity=0.420 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|++|||||||.+.|+|...+..+
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G 528 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG 528 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4578999999999999999999998886653
No 473
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=5.1e-05 Score=71.73 Aligned_cols=167 Identities=17% Similarity=0.138 Sum_probs=89.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-----------------------------CCCCccceeEEEEeEEee
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSAITKTCEMKTTVLK 66 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~~~ 66 (371)
.....+++|+|+..+||||+...|++..-.... ....+-|.......+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEt- 154 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFET- 154 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEe-
Confidence 345689999999999999998877653211100 00013444444444444
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC-----CCCHH-HHHHHHHHHHHhCCCCCCeE
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS-----RFSQE-EEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~-----~~~~~-~~~~l~~l~~~~~~~~~~~~ 140 (371)
..+.+++.|+||.-..- .-+-....++|+-++|+++.- .|... +..--..|....|. .++
T Consensus 155 e~~~ftiLDApGHk~fv-----------~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv---~~l 220 (501)
T KOG0459|consen 155 ENKRFTILDAPGHKSFV-----------PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGV---KHL 220 (501)
T ss_pred cceeEEeeccCcccccc-----------hhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhcc---ceE
Confidence 66789999999976531 111122345688888887741 12211 11122233344443 499
Q ss_pred EEEEeCCCCCCCc--hhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHH
Q 040649 141 IVVFTGGDDLEDN--EKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 141 ilv~tk~D~~~~~--~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
|+++||+|....+ .+..+++.. .+..++...+-+.+.--...+.|..++.++.+..+
T Consensus 221 Vv~vNKMddPtvnWs~eRy~E~~~-----k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 221 IVLINKMDDPTVNWSNERYEECKE-----KLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred EEEEEeccCCccCcchhhHHHHHH-----HHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 9999999976441 223333333 35666654432211111112345555666655443
No 474
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.52 E-value=0.00031 Score=60.28 Aligned_cols=93 Identities=18% Similarity=0.190 Sum_probs=56.2
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+..-+......+|++++|+|++.+....+..++..+ .. +|+++|+||+|.... .....++ ..
T Consensus 9 ~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~----~~---k~~ilVlNK~Dl~~~--~~~~~~~---------~~ 70 (171)
T cd01856 9 ALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL----GN---KPRIIVLNKADLADP--KKTKKWL---------KY 70 (171)
T ss_pred HHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh----cC---CCEEEEEehhhcCCh--HHHHHHH---------HH
Confidence 333344455567999999999866655444333322 11 389999999998643 2222111 12
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+...+..++. .|+.++.|+.+|++.+...++
T Consensus 71 ~~~~~~~vi~------iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 71 FESKGEKVLF------VNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred HHhcCCeEEE------EECCCcccHHHHHHHHHHHHH
Confidence 2221223333 566778999999999887754
No 475
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=97.51 E-value=0.0012 Score=63.56 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 23 ~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~ 52 (352)
T PRK11144 23 AQGITAIFGRSGAGKTSLINAISGLTRPQK 52 (352)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999876554
No 476
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00015 Score=62.45 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+-.|+++|++|||||||+|.+.|--.+..
T Consensus 31 ge~vv~lGpSGcGKTTLLnl~AGf~~P~~ 59 (259)
T COG4525 31 GELVVVLGPSGCGKTTLLNLIAGFVTPSR 59 (259)
T ss_pred CCEEEEEcCCCccHHHHHHHHhcCcCccc
Confidence 35799999999999999999999776443
No 477
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.50 E-value=0.00015 Score=76.24 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 482 ~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G 512 (694)
T TIGR01846 482 PGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG 512 (694)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4568999999999999999999998876553
No 478
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=97.50 E-value=0.0016 Score=62.74 Aligned_cols=30 Identities=27% Similarity=0.268 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 18 ~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~ 47 (363)
T TIGR01186 18 KGEIFVIMGLSGSGKSTTVRMLNRLIEPTA 47 (363)
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999887554
No 479
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.50 E-value=0.00045 Score=70.48 Aligned_cols=31 Identities=23% Similarity=0.425 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 343 ~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G 373 (544)
T TIGR01842 343 AGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373 (544)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578999999999999999999998765543
No 480
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.49 E-value=0.00011 Score=65.37 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~ 55 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGLLGPTS 55 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 446899999999999999999999876444
No 481
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.48 E-value=0.00011 Score=66.58 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~ 54 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGLLRPDS 54 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999876544
No 482
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.47 E-value=0.019 Score=60.96 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=16.2
Q ss_pred EEEcCCCCcHHHHHHHHh
Q 040649 23 VLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 23 ~lvG~~GsGKSTlin~L~ 40 (371)
.|+|++|||||+++-+|+
T Consensus 66 fI~G~NGSGKSAIltAl~ 83 (1074)
T KOG0250|consen 66 FIVGNNGSGKSAILTALT 83 (1074)
T ss_pred EeecCCCCcHHHHHHHHH
Confidence 788999999999998874
No 483
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=97.47 E-value=0.00063 Score=68.86 Aligned_cols=30 Identities=30% Similarity=0.318 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 36 ~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~ 65 (510)
T PRK15439 36 AGEVHALLGGNGAGKSTLMKIIAGIVPPDS 65 (510)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999876544
No 484
>PLN03232 ABC transporter C family member; Provisional
Probab=97.47 E-value=0.00087 Score=76.05 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+.+
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1495)
T PLN03232 642 VGSLVAIVGGTGEGKTSLISAMLGELSHAE 671 (1495)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcccC
Confidence 456899999999999999999999877544
No 485
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=97.46 E-value=0.00012 Score=65.30 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||++.|+|...+.+
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~s 41 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGLDAPDE 41 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 46899999999999999999999876544
No 486
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=97.45 E-value=0.00012 Score=65.36 Aligned_cols=30 Identities=27% Similarity=0.305 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||+++|+|...+.+
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 58 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGLDRPTS 58 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCcCCCc
Confidence 346899999999999999999999876444
No 487
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=97.45 E-value=0.00023 Score=72.60 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+++++|++|+|||||++.|+|...+.++
T Consensus 348 ~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G 378 (547)
T PRK10522 348 RGELLFLIGGNGSGKSTLAMLLTGLYQPQSG 378 (547)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 5579999999999999999999998765543
No 488
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.45 E-value=0.0018 Score=57.71 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..++|+|++|+|||||++.+..
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6889999999999999999873
No 489
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.45 E-value=0.00012 Score=64.73 Aligned_cols=30 Identities=20% Similarity=0.358 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 54 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGLIKESS 54 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 446899999999999999999999876544
No 490
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=97.45 E-value=0.00013 Score=65.04 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~ 56 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGALTPSR 56 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999865443
No 491
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.45 E-value=0.00012 Score=65.41 Aligned_cols=30 Identities=23% Similarity=0.197 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 54 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTLLKPTS 54 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999865444
No 492
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.45 E-value=0.00044 Score=64.21 Aligned_cols=93 Identities=13% Similarity=0.146 Sum_probs=58.0
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.+.+......+|+||+|+|++.+++..+..+.+.+ +. +|+++|+||+|.... .....+.. .+
T Consensus 12 ~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l----~~---kp~IiVlNK~DL~~~--~~~~~~~~---------~~ 73 (276)
T TIGR03596 12 RREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR----GN---KPRLIVLNKADLADP--AVTKQWLK---------YF 73 (276)
T ss_pred HHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH----CC---CCEEEEEEccccCCH--HHHHHHHH---------HH
Confidence 33344445566999999999877776655454443 22 399999999997643 22222221 22
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+..+++ .|+.++.++..|++.+..+++.
T Consensus 74 ~~~~~~vi~------iSa~~~~gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 74 EEKGIKALA------INAKKGKGVKKIIKAAKKLLKE 104 (276)
T ss_pred HHcCCeEEE------EECCCcccHHHHHHHHHHHHHH
Confidence 222223343 4566678899999888877654
No 493
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.45 E-value=0.00013 Score=63.74 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|+|||||++.|+|...+.+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~ 46 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLLRPQS 46 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 45899999999999999999999876443
No 494
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.00078 Score=62.12 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
.+-.++++|+||+|||||+++|.+...|.++
T Consensus 31 ~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG 61 (339)
T COG1135 31 KGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61 (339)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHhccCCCCCc
Confidence 3468999999999999999999998887764
No 495
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.44 E-value=0.00013 Score=65.11 Aligned_cols=30 Identities=33% Similarity=0.388 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~ 57 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGIEKPTR 57 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 446899999999999999999999865443
No 496
>PLN03130 ABC transporter C family member; Provisional
Probab=97.44 E-value=0.00058 Score=77.73 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||+++|+|...+..
T Consensus 642 ~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~ 671 (1622)
T PLN03130 642 VGSLVAIVGSTGEGKTSLISAMLGELPPRS 671 (1622)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhccCC
Confidence 456899999999999999999999876544
No 497
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.00024 Score=69.82 Aligned_cols=31 Identities=29% Similarity=0.414 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++.+|+++|+|||||||+++.|+|.-.+.++
T Consensus 363 ~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G 393 (573)
T COG4987 363 QGEKVAILGRSGSGKSTLLQLLAGAWDPQQG 393 (573)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhccCCCCC
Confidence 4679999999999999999999997776654
No 498
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.43 E-value=0.00096 Score=59.54 Aligned_cols=30 Identities=33% Similarity=0.327 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++...+++|++|+||||+++.|+|...+.+
T Consensus 27 ~G~i~GllG~NGAGKTTtfRmILglle~~~ 56 (300)
T COG4152 27 PGEIFGLLGPNGAGKTTTFRMILGLLEPTE 56 (300)
T ss_pred CCeEEEeecCCCCCccchHHHHhccCCccC
Confidence 457889999999999999999999877554
No 499
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.43 E-value=0.00014 Score=64.79 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|+|||||++.|+|...+.+
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~ 54 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGLERPDS 54 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346899999999999999999999876544
No 500
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.43 E-value=0.11 Score=54.54 Aligned_cols=20 Identities=40% Similarity=0.554 Sum_probs=17.0
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.=+|||++|||||.|+.+|-
T Consensus 27 ~NvIVGrNGSGKSNFF~AIr 46 (1200)
T KOG0964|consen 27 HNVIVGRNGSGKSNFFHAIR 46 (1200)
T ss_pred cceEecCCCCCchhhHHHhh
Confidence 34778999999999999974
Done!