Query 040649
Match_columns 371
No_of_seqs 385 out of 2162
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 16:52:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 100.0 4.5E-29 1.6E-33 225.6 19.6 208 16-229 26-233 (239)
2 3lxw_A GTPase IMAP family memb 100.0 3.7E-28 1.3E-32 220.8 22.9 204 17-226 19-224 (247)
3 2xtp_A GTPase IMAP family memb 99.9 1.7E-25 6E-30 204.5 25.3 205 15-225 18-223 (260)
4 4dhe_A Probable GTP-binding pr 99.8 1.1E-19 3.7E-24 161.5 17.5 177 17-211 27-212 (223)
5 3iev_A GTP-binding protein ERA 99.8 1.6E-19 5.5E-24 169.0 16.1 180 15-218 6-189 (308)
6 1svi_A GTP-binding protein YSX 99.8 1E-18 3.5E-23 151.7 18.7 171 17-209 21-194 (195)
7 1wf3_A GTP-binding protein; GT 99.8 3.1E-19 1.1E-23 166.4 15.5 166 19-210 7-173 (301)
8 3pqc_A Probable GTP-binding pr 99.8 3.2E-18 1.1E-22 148.1 20.3 171 17-210 21-194 (195)
9 3def_A T7I23.11 protein; chlor 99.8 4E-19 1.4E-23 162.5 14.3 154 18-176 35-189 (262)
10 1h65_A Chloroplast outer envel 99.8 2.2E-18 7.6E-23 158.2 18.5 196 18-218 38-253 (270)
11 2qu8_A Putative nucleolar GTP- 99.8 6.1E-18 2.1E-22 151.1 18.7 178 13-210 23-205 (228)
12 3iby_A Ferrous iron transport 99.8 1.2E-17 4E-22 152.2 19.3 172 20-220 2-175 (256)
13 2j69_A Bacterial dynamin-like 99.8 5.3E-17 1.8E-21 167.4 26.1 123 18-152 68-245 (695)
14 3t5d_A Septin-7; GTP-binding p 99.8 5.2E-18 1.8E-22 156.1 14.1 172 19-209 8-203 (274)
15 2lkc_A Translation initiation 99.8 3.7E-18 1.3E-22 145.7 12.1 167 17-211 6-172 (178)
16 2gf9_A RAS-related protein RAB 99.8 5.2E-18 1.8E-22 146.8 13.0 169 12-210 15-185 (189)
17 2fg5_A RAB-22B, RAS-related pr 99.8 3.7E-18 1.3E-22 148.2 11.3 166 15-210 19-186 (192)
18 2gj8_A MNME, tRNA modification 99.8 2.5E-18 8.6E-23 146.9 10.0 164 18-210 3-166 (172)
19 3tw8_B RAS-related protein RAB 99.7 1.1E-17 3.7E-22 142.9 13.0 163 16-210 6-171 (181)
20 3i8s_A Ferrous iron transport 99.7 9.3E-18 3.2E-22 154.4 13.3 179 19-224 3-185 (274)
21 1z08_A RAS-related protein RAB 99.7 1.5E-17 5.2E-22 140.6 13.5 161 18-209 5-168 (170)
22 2dyk_A GTP-binding protein; GT 99.7 1.6E-17 5.4E-22 139.2 13.3 158 20-208 2-160 (161)
23 3k53_A Ferrous iron transport 99.7 2.5E-17 8.5E-22 151.3 15.5 166 19-212 3-168 (271)
24 1z0j_A RAB-22, RAS-related pro 99.7 7.9E-18 2.7E-22 142.3 11.2 162 18-209 5-168 (170)
25 1z0f_A RAB14, member RAS oncog 99.7 1.2E-17 4E-22 142.5 12.2 163 17-209 13-177 (179)
26 2efe_B Small GTP-binding prote 99.7 1.4E-17 4.7E-22 142.5 12.4 164 17-210 10-175 (181)
27 4bas_A ADP-ribosylation factor 99.7 4.7E-17 1.6E-21 141.5 15.9 172 12-211 10-190 (199)
28 2oil_A CATX-8, RAS-related pro 99.7 8.8E-18 3E-22 145.7 11.2 161 19-209 25-187 (193)
29 1r2q_A RAS-related protein RAB 99.7 7.8E-18 2.7E-22 142.2 10.3 162 18-209 5-168 (170)
30 3tkl_A RAS-related protein RAB 99.7 4.3E-17 1.5E-21 141.3 15.2 164 17-211 14-180 (196)
31 2bme_A RAB4A, RAS-related prot 99.7 7.5E-17 2.6E-21 138.6 15.7 162 17-209 8-172 (186)
32 3a1s_A Iron(II) transport prot 99.7 1.7E-16 5.7E-21 144.7 18.7 162 19-209 5-166 (258)
33 1upt_A ARL1, ADP-ribosylation 99.7 2.4E-17 8.2E-22 139.6 12.3 162 18-210 6-169 (171)
34 2bcg_Y Protein YP2, GTP-bindin 99.7 7.7E-17 2.6E-21 141.3 15.7 162 18-210 7-171 (206)
35 2h57_A ADP-ribosylation factor 99.7 1E-17 3.6E-22 145.0 9.9 164 18-210 20-187 (190)
36 1ek0_A Protein (GTP-binding pr 99.7 5.2E-18 1.8E-22 143.3 7.5 162 19-208 3-167 (170)
37 2il1_A RAB12; G-protein, GDP, 99.7 3.9E-17 1.3E-21 141.8 13.3 163 17-210 24-190 (192)
38 1zbd_A Rabphilin-3A; G protein 99.7 6.3E-17 2.2E-21 141.4 14.6 162 19-210 8-171 (203)
39 2hup_A RAS-related protein RAB 99.7 5.6E-17 1.9E-21 142.0 14.2 162 19-211 29-194 (201)
40 2ew1_A RAS-related protein RAB 99.7 9.8E-17 3.4E-21 140.7 15.8 160 19-209 26-188 (201)
41 2a9k_A RAS-related protein RAL 99.7 4.6E-17 1.6E-21 139.7 13.2 163 17-210 16-181 (187)
42 2y8e_A RAB-protein 6, GH09086P 99.7 2.1E-17 7.3E-22 140.8 10.8 160 19-209 14-176 (179)
43 3bc1_A RAS-related protein RAB 99.7 1.4E-16 4.9E-21 137.4 16.1 164 17-209 9-184 (195)
44 2p5s_A RAS and EF-hand domain 99.7 8.3E-18 2.8E-22 146.9 8.3 167 18-209 27-196 (199)
45 2g6b_A RAS-related protein RAB 99.7 1.1E-16 3.9E-21 136.6 15.1 163 18-210 9-174 (180)
46 3clv_A RAB5 protein, putative; 99.7 1.1E-16 3.7E-21 139.2 15.0 159 18-210 6-204 (208)
47 3oes_A GTPase rhebl1; small GT 99.7 4.5E-17 1.5E-21 142.4 12.5 168 15-212 20-189 (201)
48 2a5j_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 142.5 11.0 177 1-209 1-183 (191)
49 1ksh_A ARF-like protein 2; sma 99.7 5.2E-17 1.8E-21 139.9 12.7 162 17-211 16-181 (186)
50 1g16_A RAS-related protein SEC 99.7 3.9E-17 1.3E-21 138.0 11.6 160 19-210 3-165 (170)
51 3cph_A RAS-related protein SEC 99.7 6E-17 2.1E-21 142.4 13.2 163 16-210 17-182 (213)
52 2fu5_C RAS-related protein RAB 99.7 4.4E-17 1.5E-21 139.8 12.0 161 18-209 7-170 (183)
53 2q3h_A RAS homolog gene family 99.7 9.1E-17 3.1E-21 140.2 14.0 185 1-210 2-195 (201)
54 2wji_A Ferrous iron transport 99.7 1.3E-16 4.6E-21 135.0 14.6 160 20-208 4-163 (165)
55 1wms_A RAB-9, RAB9, RAS-relate 99.7 3.1E-16 1.1E-20 133.5 16.9 163 18-210 6-174 (177)
56 1kao_A RAP2A; GTP-binding prot 99.7 1.7E-16 5.9E-21 133.3 14.6 161 19-210 3-166 (167)
57 2gco_A H9, RHO-related GTP-bin 99.7 1E-16 3.4E-21 140.2 13.5 168 15-208 21-198 (201)
58 2erx_A GTP-binding protein DI- 99.7 8.1E-17 2.8E-21 136.1 12.5 163 19-210 3-167 (172)
59 3q72_A GTP-binding protein RAD 99.7 1.9E-16 6.4E-21 133.5 14.7 161 19-210 2-164 (166)
60 3dz8_A RAS-related protein RAB 99.7 2.6E-17 8.8E-22 142.7 9.5 163 18-210 22-186 (191)
61 2o52_A RAS-related protein RAB 99.7 9E-17 3.1E-21 140.5 13.0 161 18-209 24-187 (200)
62 1ky3_A GTP-binding protein YPT 99.7 9.8E-17 3.4E-21 137.0 13.0 166 16-209 5-177 (182)
63 1x3s_A RAS-related protein RAB 99.7 5.2E-17 1.8E-21 140.6 11.0 165 18-212 14-180 (195)
64 1zd9_A ADP-ribosylation factor 99.7 2.6E-17 9E-22 142.3 9.0 162 18-210 21-185 (188)
65 4dsu_A GTPase KRAS, isoform 2B 99.7 9E-17 3.1E-21 138.2 12.2 161 18-210 3-166 (189)
66 3gee_A MNME, tRNA modification 99.7 3.6E-16 1.2E-20 154.2 17.9 165 19-209 233-397 (476)
67 3reg_A RHO-like small GTPase; 99.7 8.5E-17 2.9E-21 139.7 12.0 162 18-211 22-189 (194)
68 2j1l_A RHO-related GTP-binding 99.7 2.2E-16 7.4E-21 139.6 14.8 169 18-212 33-211 (214)
69 4dcu_A GTP-binding protein ENG 99.7 9.6E-17 3.3E-21 158.1 13.8 176 17-214 193-373 (456)
70 2atx_A Small GTP binding prote 99.7 1.6E-16 5.4E-21 137.8 13.5 165 18-208 17-191 (194)
71 1u8z_A RAS-related protein RAL 99.7 1.6E-16 5.5E-21 133.6 13.1 161 18-209 3-166 (168)
72 4gzl_A RAS-related C3 botulinu 99.7 7.2E-17 2.5E-21 141.6 11.2 165 17-207 28-202 (204)
73 1mky_A Probable GTP-binding pr 99.7 1E-16 3.4E-21 157.3 13.4 164 20-210 2-166 (439)
74 2hjg_A GTP-binding protein ENG 99.7 6.7E-17 2.3E-21 158.4 12.1 175 18-213 174-352 (436)
75 3t5g_A GTP-binding protein RHE 99.7 1.8E-16 6.2E-21 135.7 13.4 165 18-213 5-172 (181)
76 3t1o_A Gliding protein MGLA; G 99.7 1.2E-16 4.3E-21 138.3 12.5 166 17-210 12-192 (198)
77 1ega_A Protein (GTP-binding pr 99.7 9.9E-17 3.4E-21 149.5 12.6 166 19-210 8-175 (301)
78 1z06_A RAS-related protein RAB 99.7 1E-16 3.5E-21 138.6 11.7 162 18-209 19-187 (189)
79 1z2a_A RAS-related protein RAB 99.7 6.1E-17 2.1E-21 136.5 10.0 160 18-209 4-166 (168)
80 1r8s_A ADP-ribosylation factor 99.7 7.2E-17 2.5E-21 135.7 10.3 159 20-209 1-161 (164)
81 2f7s_A C25KG, RAS-related prot 99.7 3.3E-16 1.1E-20 138.4 14.9 159 19-209 25-198 (217)
82 4dcu_A GTP-binding protein ENG 99.7 1.7E-17 6E-22 163.4 7.3 164 18-210 22-185 (456)
83 2nzj_A GTP-binding protein REM 99.7 5.2E-16 1.8E-20 131.8 15.3 163 18-209 3-168 (175)
84 2bov_A RAla, RAS-related prote 99.7 4.8E-16 1.6E-20 135.8 15.3 163 17-210 12-177 (206)
85 2fn4_A P23, RAS-related protei 99.7 7.3E-16 2.5E-20 131.4 16.0 165 15-211 5-173 (181)
86 2yc2_C IFT27, small RAB-relate 99.7 5.6E-17 1.9E-21 141.9 9.1 162 18-209 19-191 (208)
87 1zj6_A ADP-ribosylation factor 99.7 7.8E-17 2.7E-21 139.0 9.9 160 18-211 15-179 (187)
88 2gf0_A GTP-binding protein DI- 99.7 2.3E-16 7.8E-21 137.1 13.0 166 17-212 6-173 (199)
89 2h17_A ADP-ribosylation factor 99.7 2.4E-17 8.3E-22 141.6 6.6 156 18-206 20-179 (181)
90 2wjg_A FEOB, ferrous iron tran 99.7 6.5E-16 2.2E-20 133.1 15.5 166 18-212 6-171 (188)
91 3llu_A RAS-related GTP-binding 99.7 1.3E-16 4.5E-21 138.9 11.1 174 14-207 15-194 (196)
92 2hxs_A RAB-26, RAS-related pro 99.7 1.1E-16 3.8E-21 136.4 10.1 166 17-211 4-174 (178)
93 2ce2_X GTPase HRAS; signaling 99.7 4.7E-16 1.6E-20 130.3 13.8 158 20-209 4-164 (166)
94 1vg8_A RAS-related protein RAB 99.7 2.1E-16 7.3E-21 138.3 12.1 164 17-210 6-175 (207)
95 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.3E-16 7.9E-21 135.3 12.0 166 19-210 5-180 (186)
96 3kkq_A RAS-related protein M-R 99.7 2.8E-16 9.6E-21 134.7 12.5 166 13-209 12-181 (183)
97 4djt_A GTP-binding nuclear pro 99.7 4E-17 1.4E-21 144.4 7.4 168 17-214 9-179 (218)
98 1c1y_A RAS-related protein RAP 99.7 2.4E-16 8.3E-21 132.6 11.7 160 19-208 3-165 (167)
99 2fh5_B SR-beta, signal recogni 99.7 3.5E-16 1.2E-20 137.9 13.2 119 18-152 6-130 (214)
100 3con_A GTPase NRAS; structural 99.7 8.6E-16 2.9E-20 132.6 15.2 162 18-211 20-184 (190)
101 3b1v_A Ferrous iron uptake tra 99.7 5.4E-16 1.9E-20 142.3 14.2 162 19-210 3-164 (272)
102 3cbq_A GTP-binding protein REM 99.7 5E-16 1.7E-20 135.3 13.3 173 11-212 15-190 (195)
103 1jwy_B Dynamin A GTPase domain 99.7 7.9E-16 2.7E-20 144.1 15.4 177 18-211 23-263 (315)
104 1moz_A ARL1, ADP-ribosylation 99.7 2.5E-16 8.6E-21 134.9 10.7 161 17-210 16-180 (183)
105 3q85_A GTP-binding protein REM 99.7 5.8E-16 2E-20 130.8 12.8 162 20-210 3-167 (169)
106 4dkx_A RAS-related protein RAB 99.7 3.6E-16 1.2E-20 138.7 11.9 162 18-210 12-176 (216)
107 2x77_A ADP-ribosylation factor 99.7 9E-17 3.1E-21 138.8 7.7 164 17-211 20-185 (189)
108 2e87_A Hypothetical protein PH 99.7 2.7E-15 9.1E-20 143.2 18.6 169 17-210 165-336 (357)
109 3geh_A MNME, tRNA modification 99.7 2E-16 7E-21 155.3 11.0 162 19-211 224-385 (462)
110 3cpj_B GTP-binding protein YPT 99.7 3.8E-16 1.3E-20 138.9 11.8 163 18-211 12-177 (223)
111 2b6h_A ADP-ribosylation factor 99.7 2.1E-16 7.2E-21 137.3 9.8 162 17-209 27-190 (192)
112 2fv8_A H6, RHO-related GTP-bin 99.7 4E-16 1.4E-20 137.0 11.6 166 19-210 25-200 (207)
113 2atv_A RERG, RAS-like estrogen 99.7 6.8E-16 2.3E-20 134.2 12.9 170 9-210 17-191 (196)
114 1fzq_A ADP-ribosylation factor 99.7 3.2E-16 1.1E-20 134.7 10.6 160 17-209 14-177 (181)
115 3q3j_B RHO-related GTP-binding 99.6 1.2E-15 4.1E-20 134.9 13.3 171 17-211 25-204 (214)
116 2hjg_A GTP-binding protein ENG 99.6 2.1E-16 7E-21 154.9 9.2 162 20-210 4-165 (436)
117 1mky_A Probable GTP-binding pr 99.6 1.3E-15 4.5E-20 149.3 14.8 178 18-213 179-358 (439)
118 3gj0_A GTP-binding nuclear pro 99.6 9.9E-17 3.4E-21 142.3 6.0 165 16-212 12-177 (221)
119 3l0i_B RAS-related protein RAB 99.6 2E-17 6.8E-22 144.4 1.2 162 18-210 32-196 (199)
120 1wb1_A Translation elongation 99.6 1.4E-15 4.9E-20 150.4 14.3 162 18-209 18-188 (482)
121 1m7b_A RND3/RHOE small GTP-bin 99.6 1.6E-15 5.6E-20 130.4 12.5 167 17-208 5-181 (184)
122 1lnz_A SPO0B-associated GTP-bi 99.6 2.6E-16 8.8E-21 148.8 8.1 175 20-217 159-338 (342)
123 1f6b_A SAR1; gtpases, N-termin 99.6 4.9E-16 1.7E-20 135.7 9.3 168 18-207 24-196 (198)
124 1m2o_B GTP-binding protein SAR 99.6 1.4E-15 4.9E-20 131.8 11.9 165 17-206 21-188 (190)
125 3ihw_A Centg3; RAS, centaurin, 99.6 1.2E-15 4.2E-20 131.6 11.2 161 15-210 16-180 (184)
126 3bwd_D RAC-like GTP-binding pr 99.6 6.7E-16 2.3E-20 132.0 9.4 165 18-208 7-179 (182)
127 1gwn_A RHO-related GTP-binding 99.6 2.3E-15 7.7E-20 132.3 12.9 168 16-208 25-202 (205)
128 2cxx_A Probable GTP-binding pr 99.6 6.2E-16 2.1E-20 133.2 9.0 171 20-212 2-186 (190)
129 1xzp_A Probable tRNA modificat 99.6 7.4E-16 2.5E-20 152.0 10.7 159 20-209 244-404 (482)
130 3qq5_A Small GTP-binding prote 99.6 1.9E-16 6.6E-21 153.6 5.8 167 16-211 31-197 (423)
131 3c5c_A RAS-like protein 12; GD 99.6 6.6E-15 2.2E-19 127.2 14.1 161 17-209 19-185 (187)
132 2aka_B Dynamin-1; fusion prote 99.6 1.3E-15 4.6E-20 141.3 10.3 173 18-206 25-249 (299)
133 2j0v_A RAC-like GTP-binding pr 99.6 2.8E-15 9.4E-20 131.9 11.9 168 18-211 8-181 (212)
134 2iwr_A Centaurin gamma 1; ANK 99.6 1.4E-15 4.9E-20 129.7 9.6 156 18-209 6-168 (178)
135 3lvq_E ARF-GAP with SH3 domain 99.6 1.2E-15 4.1E-20 151.9 10.1 169 18-219 321-493 (497)
136 2g3y_A GTP-binding protein GEM 99.6 1.1E-14 3.8E-19 128.6 14.6 163 18-209 36-202 (211)
137 3sjy_A Translation initiation 99.6 9.8E-15 3.4E-19 141.5 15.5 168 17-210 6-192 (403)
138 3o47_A ADP-ribosylation factor 99.6 2E-15 7E-20 142.4 10.3 160 18-210 164-327 (329)
139 1pui_A ENGB, probable GTP-bind 99.6 2.5E-14 8.4E-19 125.5 16.5 174 17-210 24-199 (210)
140 3tr5_A RF-3, peptide chain rel 99.6 1.5E-15 5.1E-20 151.6 9.4 118 18-152 12-149 (528)
141 3t34_A Dynamin-related protein 99.6 3.4E-15 1.2E-19 142.6 10.7 130 18-152 33-218 (360)
142 3j2k_7 ERF3, eukaryotic polype 99.6 9.3E-15 3.2E-19 143.1 13.8 168 14-202 12-217 (439)
143 2qtf_A Protein HFLX, GTP-bindi 99.6 4.1E-14 1.4E-18 135.0 17.7 172 20-211 180-355 (364)
144 3r7w_A Gtpase1, GTP-binding pr 99.6 3E-14 1E-18 133.1 16.3 169 19-205 3-176 (307)
145 2c78_A Elongation factor TU-A; 99.6 1.1E-14 3.7E-19 141.3 13.8 166 16-210 8-212 (405)
146 1kk1_A EIF2gamma; initiation o 99.6 1.2E-14 4.2E-19 141.1 13.9 166 17-210 8-200 (410)
147 2qag_A Septin-2, protein NEDD5 99.6 2.2E-14 7.4E-19 137.0 14.8 154 19-185 37-215 (361)
148 2qag_C Septin-7; cell cycle, c 99.6 4.9E-14 1.7E-18 136.4 17.3 168 18-205 30-222 (418)
149 1d2e_A Elongation factor TU (E 99.6 3E-14 1E-18 137.8 15.6 164 18-210 2-195 (397)
150 1s0u_A EIF-2-gamma, translatio 99.6 8E-14 2.7E-18 135.3 18.7 166 17-210 6-198 (408)
151 2elf_A Protein translation elo 99.6 8.4E-15 2.9E-19 140.1 11.2 151 21-210 23-180 (370)
152 2zej_A Dardarin, leucine-rich 99.6 1.3E-14 4.4E-19 124.9 11.1 168 20-210 3-178 (184)
153 1zun_B Sulfate adenylate trans 99.6 1.6E-14 5.5E-19 141.3 13.0 159 17-199 22-213 (434)
154 3izy_P Translation initiation 99.6 1.5E-16 5.1E-21 158.4 -2.5 161 19-209 4-167 (537)
155 2x2e_A Dynamin-1; nitration, h 99.6 8.3E-14 2.8E-18 132.6 16.6 172 19-206 31-254 (353)
156 3p26_A Elongation factor 1 alp 99.6 2.1E-14 7.3E-19 142.3 12.9 158 18-199 32-227 (483)
157 3th5_A RAS-related C3 botulinu 99.3 4.6E-16 1.6E-20 136.2 0.0 167 17-207 28-202 (204)
158 2qag_B Septin-6, protein NEDD5 99.5 8.9E-15 3.1E-19 141.2 8.7 151 20-186 43-218 (427)
159 3zvr_A Dynamin-1; hydrolase, D 99.5 2.4E-13 8.2E-18 139.7 19.8 173 18-210 50-281 (772)
160 2ged_A SR-beta, signal recogni 99.5 4.3E-14 1.5E-18 122.2 12.1 120 17-152 46-171 (193)
161 2wkq_A NPH1-1, RAS-related C3 99.5 4.3E-14 1.5E-18 132.7 12.3 167 18-209 154-329 (332)
162 3izq_1 HBS1P, elongation facto 99.5 4E-14 1.4E-18 143.7 12.6 162 17-200 165-362 (611)
163 2cjw_A GTP-binding protein GEM 99.5 9E-14 3.1E-18 120.7 11.3 162 19-209 6-171 (192)
164 2f9l_A RAB11B, member RAS onco 99.5 1.6E-13 5.5E-18 119.5 12.8 161 19-210 5-168 (199)
165 3cb4_D GTP-binding protein LEP 99.5 8.9E-14 3E-18 140.4 11.7 163 19-211 4-183 (599)
166 1g7s_A Translation initiation 99.5 1.1E-13 3.6E-18 139.9 12.2 115 19-151 5-136 (594)
167 4a9a_A Ribosome-interacting GT 99.5 9.4E-14 3.2E-18 132.3 10.9 123 19-150 72-195 (376)
168 1zo1_I IF2, translation initia 99.5 1.7E-15 5.8E-20 149.6 -1.5 160 19-206 4-163 (501)
169 1nrj_B SR-beta, signal recogni 99.5 2.5E-13 8.5E-18 119.8 12.5 120 17-152 10-135 (218)
170 1jny_A EF-1-alpha, elongation 99.5 1.2E-13 4E-18 135.2 11.2 155 17-198 4-201 (435)
171 2ywe_A GTP-binding protein LEP 99.5 1.1E-13 3.8E-18 139.5 11.2 164 18-211 5-185 (600)
172 3dpu_A RAB family protein; roc 99.5 8.7E-14 3E-18 139.7 10.1 164 18-212 40-210 (535)
173 3vqt_A RF-3, peptide chain rel 99.5 2.2E-13 7.5E-18 136.6 12.2 119 18-153 30-168 (548)
174 1oix_A RAS-related protein RAB 99.5 6.1E-13 2.1E-17 115.2 12.9 159 19-208 29-190 (191)
175 3avx_A Elongation factor TS, e 99.5 6E-13 2E-17 140.8 15.0 165 16-209 293-485 (1289)
176 1udx_A The GTP-binding protein 99.5 5.4E-13 1.8E-17 129.1 13.6 170 20-213 158-328 (416)
177 1f60_A Elongation factor EEF1A 99.4 5.8E-14 2E-18 138.2 6.8 154 18-198 6-200 (458)
178 1dar_A EF-G, elongation factor 99.4 1.7E-13 5.8E-18 141.2 10.5 121 15-152 8-144 (691)
179 2qpt_A EH domain-containing pr 99.4 1.3E-13 4.3E-18 138.5 8.6 136 17-162 63-241 (550)
180 2xex_A Elongation factor G; GT 99.4 6.1E-13 2.1E-17 137.1 13.6 119 17-152 8-142 (693)
181 3mca_A HBS1, elongation factor 99.4 7.4E-15 2.5E-19 148.7 -2.3 169 17-209 175-396 (592)
182 1wxq_A GTP-binding protein; st 99.4 1.3E-12 4.3E-17 126.1 12.2 91 20-116 1-114 (397)
183 2rdo_7 EF-G, elongation factor 99.4 3.2E-12 1.1E-16 131.8 16.0 119 17-152 8-149 (704)
184 2h5e_A Peptide chain release f 99.4 2E-13 6.8E-18 136.3 6.7 118 18-152 12-149 (529)
185 3sop_A Neuronal-specific septi 99.4 1.4E-12 4.7E-17 119.4 11.3 153 20-185 3-181 (270)
186 2qnr_A Septin-2, protein NEDD5 99.4 4E-12 1.4E-16 118.2 13.6 173 18-210 17-214 (301)
187 1r5b_A Eukaryotic peptide chai 99.4 6.8E-13 2.3E-17 130.8 8.2 161 17-201 41-243 (467)
188 2dy1_A Elongation factor G; tr 99.4 2.6E-12 8.7E-17 131.9 12.6 116 18-150 8-139 (665)
189 3c5h_A Glucocorticoid receptor 99.4 2.4E-12 8.3E-17 116.8 10.9 87 103-208 162-253 (255)
190 2www_A Methylmalonic aciduria 99.4 2.3E-12 7.8E-17 122.3 10.6 114 67-210 165-279 (349)
191 3p32_A Probable GTPase RV1496/ 99.3 9.3E-13 3.2E-17 125.4 6.6 114 67-210 170-284 (355)
192 3j25_A Tetracycline resistance 99.3 8.5E-13 2.9E-17 134.9 6.6 117 19-152 2-134 (638)
193 2p67_A LAO/AO transport system 99.3 4.5E-12 1.5E-16 120.0 10.1 113 67-209 147-260 (341)
194 3r7w_B Gtpase2, GTP-binding pr 99.3 4.1E-12 1.4E-16 118.4 7.0 119 21-152 1-121 (331)
195 2qm8_A GTPase/ATPase; G protei 99.2 4E-11 1.4E-15 113.2 9.8 107 67-209 146-260 (337)
196 4fn5_A EF-G 1, elongation fact 99.2 7.4E-11 2.5E-15 122.0 12.1 120 17-152 11-152 (709)
197 1jal_A YCHF protein; nucleotid 99.2 5.2E-11 1.8E-15 112.8 10.0 90 20-115 3-108 (363)
198 2dby_A GTP-binding protein; GD 99.2 5.1E-11 1.7E-15 113.5 9.7 90 20-115 2-111 (368)
199 1n0u_A EF-2, elongation factor 99.1 4.9E-11 1.7E-15 125.3 8.1 117 18-150 18-163 (842)
200 1yrb_A ATP(GTP)binding protein 99.1 1.7E-10 5.8E-15 104.6 10.6 131 69-212 109-259 (262)
201 2j37_W Signal recognition part 99.1 3.9E-10 1.3E-14 111.4 12.7 164 18-207 100-310 (504)
202 3h2y_A GTPase family protein; 99.1 1.2E-11 4E-16 118.2 -0.5 124 19-152 160-288 (368)
203 2wsm_A Hydrogenase expression/ 99.0 2.5E-10 8.5E-15 100.7 6.4 155 19-210 30-214 (221)
204 3szr_A Interferon-induced GTP- 99.0 1.7E-09 5.8E-14 109.9 13.2 129 20-152 46-229 (608)
205 1tq4_A IIGP1, interferon-induc 99.0 5E-09 1.7E-13 101.0 14.9 171 20-212 70-255 (413)
206 1f5n_A Interferon-induced guan 99.0 1.2E-09 4.2E-14 109.6 9.7 109 16-130 35-147 (592)
207 3ec1_A YQEH GTPase; atnos1, at 99.0 1.6E-11 5.4E-16 117.4 -4.0 123 19-152 162-289 (369)
208 2ohf_A Protein OLA1, GTP-bindi 98.9 8.9E-10 3E-14 105.4 7.0 91 18-114 21-127 (396)
209 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.6E-09 1.2E-13 101.3 8.0 94 16-114 17-126 (392)
210 1puj_A YLQF, conserved hypothe 98.8 9.7E-09 3.3E-13 94.3 8.3 65 18-87 119-183 (282)
211 3dm5_A SRP54, signal recogniti 98.7 4.8E-08 1.6E-12 94.7 11.6 123 18-152 99-254 (443)
212 1zcb_A G alpha I/13; GTP-bindi 98.7 4.5E-08 1.6E-12 92.9 11.3 73 67-150 199-281 (362)
213 2hf9_A Probable hydrogenase ni 98.7 1.8E-08 6.1E-13 89.0 5.9 25 18-42 37-61 (226)
214 1cip_A Protein (guanine nucleo 98.7 1.1E-07 3.8E-12 90.0 11.6 129 67-210 191-344 (353)
215 3kl4_A SRP54, signal recogniti 98.6 4.7E-08 1.6E-12 94.7 7.9 125 18-152 96-253 (433)
216 2yhs_A FTSY, cell division pro 98.6 1.2E-07 4E-12 92.8 10.6 124 17-150 291-451 (503)
217 3ohm_A Guanine nucleotide-bind 98.6 2.7E-07 9.4E-12 86.1 11.8 135 61-211 160-319 (327)
218 1rj9_A FTSY, signal recognitio 98.6 2.2E-07 7.4E-12 86.2 10.2 126 18-150 101-260 (304)
219 3cnl_A YLQF, putative uncharac 98.6 5E-08 1.7E-12 88.6 5.4 60 20-84 100-159 (262)
220 2v3c_C SRP54, signal recogniti 98.5 1E-07 3.4E-12 92.6 6.7 121 19-151 99-252 (432)
221 3e70_C DPA, signal recognition 98.5 5E-07 1.7E-11 84.6 10.5 122 17-150 127-281 (328)
222 3q5d_A Atlastin-1; G protein, 98.5 3.8E-07 1.3E-11 88.6 9.7 109 16-130 64-195 (447)
223 2xxa_A Signal recognition part 98.4 5.7E-06 2E-10 80.3 15.6 123 17-151 98-254 (433)
224 2xtz_A Guanine nucleotide-bind 98.4 4E-06 1.4E-10 79.2 13.4 71 69-150 183-263 (354)
225 3b9q_A Chloroplast SRP recepto 98.4 3.5E-06 1.2E-10 77.9 12.6 124 17-150 98-259 (302)
226 1j8m_F SRP54, signal recogniti 98.3 2.8E-06 9.5E-11 78.4 11.6 123 19-151 98-253 (297)
227 2og2_A Putative signal recogni 98.3 3.7E-06 1.3E-10 79.5 12.6 126 17-152 155-318 (359)
228 4fid_A G protein alpha subunit 98.3 3E-06 1E-10 79.4 10.3 77 62-150 155-241 (340)
229 1vma_A Cell division protein F 98.3 5E-06 1.7E-10 77.0 11.5 125 18-152 103-264 (306)
230 1t9h_A YLOQ, probable GTPase E 98.2 2.9E-07 9.8E-12 85.3 2.3 59 19-82 173-237 (307)
231 2ffh_A Protein (FFH); SRP54, s 98.2 4.2E-06 1.4E-10 80.8 8.7 122 18-151 97-251 (425)
232 2px0_A Flagellar biosynthesis 98.2 1.4E-06 4.9E-11 80.3 5.1 122 18-152 104-254 (296)
233 1zu4_A FTSY; GTPase, signal re 98.1 1.8E-05 6E-10 73.8 10.8 125 17-151 103-268 (320)
234 4ido_A Atlastin-1; GTPase, GTP 98.1 2.3E-05 7.8E-10 75.8 11.8 108 16-130 64-195 (457)
235 2yv5_A YJEQ protein; hydrolase 98.1 4.2E-06 1.4E-10 77.4 6.1 58 19-81 165-228 (302)
236 1u0l_A Probable GTPase ENGC; p 98.0 3.3E-06 1.1E-10 78.2 4.9 60 19-82 169-234 (301)
237 2rcn_A Probable GTPase ENGC; Y 98.0 3.4E-06 1.2E-10 79.6 4.0 30 19-48 215-245 (358)
238 1ls1_A Signal recognition part 97.9 1.8E-05 6E-10 73.0 7.1 122 18-151 97-251 (295)
239 1s96_A Guanylate kinase, GMP k 97.6 2.2E-05 7.4E-10 69.1 3.0 41 1-44 1-41 (219)
240 3tif_A Uncharacterized ABC tra 97.6 2.9E-05 1E-09 69.0 3.9 30 18-47 30-59 (235)
241 3b5x_A Lipid A export ATP-bind 97.6 0.00011 3.9E-09 74.1 7.9 31 18-48 368-398 (582)
242 2pcj_A ABC transporter, lipopr 97.6 3.5E-05 1.2E-09 68.0 3.7 29 19-47 30-58 (224)
243 1mv5_A LMRA, multidrug resista 97.6 5.7E-05 1.9E-09 67.5 4.6 30 18-47 27-56 (243)
244 1b0u_A Histidine permease; ABC 97.5 4.7E-05 1.6E-09 68.9 3.9 30 18-47 31-60 (262)
245 4g1u_C Hemin import ATP-bindin 97.5 5.4E-05 1.9E-09 68.6 4.2 30 18-47 36-65 (266)
246 1z6g_A Guanylate kinase; struc 97.5 3.2E-05 1.1E-09 67.9 2.5 26 18-43 22-47 (218)
247 1g6h_A High-affinity branched- 97.5 4.9E-05 1.7E-09 68.5 3.7 30 18-47 32-61 (257)
248 1vpl_A ABC transporter, ATP-bi 97.5 5.3E-05 1.8E-09 68.3 3.9 30 18-47 40-69 (256)
249 2cbz_A Multidrug resistance-as 97.5 4.5E-05 1.5E-09 67.9 3.4 30 18-47 30-59 (237)
250 2olj_A Amino acid ABC transpor 97.5 5.4E-05 1.8E-09 68.5 3.9 30 18-47 49-78 (263)
251 3gfo_A Cobalt import ATP-bindi 97.5 5.1E-05 1.7E-09 69.1 3.7 30 18-47 33-62 (275)
252 1sgw_A Putative ABC transporte 97.5 4.7E-05 1.6E-09 66.7 3.3 29 19-47 35-63 (214)
253 1ji0_A ABC transporter; ATP bi 97.5 5.6E-05 1.9E-09 67.4 3.7 30 18-47 31-60 (240)
254 2pze_A Cystic fibrosis transme 97.5 5.8E-05 2E-09 66.8 3.8 30 18-47 33-62 (229)
255 2ff7_A Alpha-hemolysin translo 97.5 5.8E-05 2E-09 67.6 3.7 30 18-47 34-63 (247)
256 2onk_A Molybdate/tungstate ABC 97.5 6.4E-05 2.2E-09 67.0 3.9 28 20-47 25-52 (240)
257 1lvg_A Guanylate kinase, GMP k 97.5 3.8E-05 1.3E-09 66.3 2.3 25 19-43 4-28 (198)
258 2ixe_A Antigen peptide transpo 97.5 6.8E-05 2.3E-09 68.1 3.9 30 18-47 44-73 (271)
259 2yz2_A Putative ABC transporte 97.5 6.8E-05 2.3E-09 67.9 3.9 30 18-47 32-61 (266)
260 2ihy_A ABC transporter, ATP-bi 97.4 6.8E-05 2.3E-09 68.4 3.8 30 18-47 46-75 (279)
261 1htw_A HI0065; nucleotide-bind 97.4 0.00011 3.6E-09 61.2 4.6 30 18-48 32-61 (158)
262 1znw_A Guanylate kinase, GMP k 97.4 5.4E-05 1.8E-09 65.7 2.9 26 18-43 19-44 (207)
263 2nq2_C Hypothetical ABC transp 97.4 7.2E-05 2.5E-09 67.2 3.7 30 18-47 30-59 (253)
264 3ney_A 55 kDa erythrocyte memb 97.4 1.8E-05 6.3E-10 68.3 -0.4 26 18-43 18-43 (197)
265 1azs_C GS-alpha; complex (lyas 97.4 0.00022 7.6E-09 68.2 7.0 78 61-150 210-297 (402)
266 3qf4_B Uncharacterized ABC tra 97.4 7.6E-05 2.6E-09 75.5 3.8 30 18-47 380-409 (598)
267 1ye8_A Protein THEP1, hypothet 97.4 6.6E-05 2.3E-09 63.7 2.7 23 21-43 2-24 (178)
268 3qf4_A ABC transporter, ATP-bi 97.4 0.0001 3.4E-09 74.5 4.4 30 18-47 368-397 (587)
269 4e22_A Cytidylate kinase; P-lo 97.4 7.8E-05 2.7E-09 66.9 3.2 32 15-46 23-57 (252)
270 3tr0_A Guanylate kinase, GMP k 97.4 8E-05 2.7E-09 64.1 3.1 25 19-43 7-31 (205)
271 4f4c_A Multidrug resistance pr 97.4 8.2E-05 2.8E-09 81.9 3.9 30 18-47 1104-1133(1321)
272 2qi9_C Vitamin B12 import ATP- 97.4 9.8E-05 3.4E-09 66.2 3.7 29 18-46 25-53 (249)
273 1kgd_A CASK, peripheral plasma 97.4 8.1E-05 2.8E-09 63.1 3.0 25 19-43 5-29 (180)
274 4a82_A Cystic fibrosis transme 97.3 0.0002 6.8E-09 72.2 6.1 30 18-47 366-395 (578)
275 1zp6_A Hypothetical protein AT 97.3 0.00013 4.3E-09 62.1 4.0 25 18-42 8-32 (191)
276 3nh6_A ATP-binding cassette SU 97.3 8.3E-05 2.8E-09 68.7 2.9 30 18-47 79-108 (306)
277 3tui_C Methionine import ATP-b 97.3 0.00013 4.3E-09 69.0 4.0 30 18-47 53-82 (366)
278 3fvq_A Fe(3+) IONS import ATP- 97.3 0.00012 4.2E-09 69.0 3.9 30 19-48 30-59 (359)
279 2bbs_A Cystic fibrosis transme 97.3 0.00011 3.7E-09 67.4 3.5 30 18-47 63-92 (290)
280 2d2e_A SUFC protein; ABC-ATPas 97.3 0.00011 3.7E-09 66.0 3.3 25 18-42 28-52 (250)
281 2zu0_C Probable ATP-dependent 97.3 0.00014 4.7E-09 65.9 3.8 26 18-43 45-70 (267)
282 3a00_A Guanylate kinase, GMP k 97.3 8.8E-05 3E-09 63.2 2.3 25 20-44 2-26 (186)
283 2ghi_A Transport protein; mult 97.3 0.00014 4.7E-09 65.7 3.6 27 18-44 45-71 (260)
284 2pjz_A Hypothetical protein ST 97.3 0.00015 5E-09 65.6 3.7 27 20-47 31-57 (263)
285 3c8u_A Fructokinase; YP_612366 97.3 0.00011 3.8E-09 63.7 2.9 28 17-44 20-47 (208)
286 3rlf_A Maltose/maltodextrin im 97.3 0.00016 5.4E-09 68.7 4.0 30 18-47 28-57 (381)
287 3b85_A Phosphate starvation-in 97.3 5.2E-05 1.8E-09 66.1 0.6 29 19-48 22-50 (208)
288 2yyz_A Sugar ABC transporter, 97.2 0.00016 5.6E-09 68.2 4.0 30 18-47 28-57 (359)
289 2it1_A 362AA long hypothetical 97.2 0.00017 5.9E-09 68.1 4.0 30 18-47 28-57 (362)
290 1z47_A CYSA, putative ABC-tran 97.2 0.00017 5.8E-09 68.0 3.8 30 18-47 40-69 (355)
291 1v43_A Sugar-binding transport 97.2 0.0002 6.9E-09 67.9 4.0 30 18-47 36-65 (372)
292 4gp7_A Metallophosphoesterase; 97.2 0.00019 6.6E-09 60.2 3.5 24 18-41 8-31 (171)
293 3asz_A Uridine kinase; cytidin 97.2 0.00015 5.3E-09 62.7 2.9 26 18-43 5-30 (211)
294 3d31_A Sulfate/molybdate ABC t 97.2 0.00015 5.3E-09 68.1 3.1 30 18-47 25-54 (348)
295 2qt1_A Nicotinamide riboside k 97.2 0.00027 9.2E-09 61.1 4.4 43 1-43 1-45 (207)
296 3lnc_A Guanylate kinase, GMP k 97.2 0.00012 4E-09 64.6 2.1 26 18-43 26-52 (231)
297 4f4c_A Multidrug resistance pr 97.2 0.00021 7.2E-09 78.6 4.5 30 18-47 443-472 (1321)
298 1qvr_A CLPB protein; coiled co 97.2 0.046 1.6E-06 57.5 22.1 24 20-43 192-215 (854)
299 3h2y_A GTPase family protein; 97.2 0.00074 2.5E-08 64.0 7.7 98 93-209 59-159 (368)
300 1g29_1 MALK, maltose transport 97.2 0.00021 7.1E-09 67.9 3.8 30 19-48 29-58 (372)
301 2eyu_A Twitching motility prot 97.1 0.00019 6.6E-09 64.7 3.2 28 17-44 23-50 (261)
302 1oxx_K GLCV, glucose, ABC tran 97.1 0.00015 5.1E-09 68.4 2.3 31 18-48 30-60 (353)
303 1knq_A Gluconate kinase; ALFA/ 97.1 0.00026 8.8E-09 59.4 3.6 25 17-41 6-30 (175)
304 2v9p_A Replication protein E1; 97.1 0.00021 7.1E-09 65.9 2.9 26 18-43 125-150 (305)
305 2jeo_A Uridine-cytidine kinase 97.1 0.00023 7.9E-09 63.4 3.2 35 6-42 14-48 (245)
306 3tau_A Guanylate kinase, GMP k 97.1 0.00025 8.4E-09 61.6 3.2 26 18-43 7-32 (208)
307 3ozx_A RNAse L inhibitor; ATP 97.1 0.00038 1.3E-08 69.4 4.9 31 18-48 24-54 (538)
308 1puj_A YLQF, conserved hypothe 97.1 0.001 3.5E-08 60.7 7.3 103 73-209 3-105 (282)
309 4eun_A Thermoresistant glucoki 97.0 0.00026 9E-09 60.9 3.0 25 18-42 28-52 (200)
310 2j41_A Guanylate kinase; GMP, 97.0 0.00029 1E-08 60.5 3.2 25 19-43 6-30 (207)
311 2bbw_A Adenylate kinase 4, AK4 97.0 0.00031 1.1E-08 62.5 3.3 28 19-46 27-57 (246)
312 3aez_A Pantothenate kinase; tr 97.0 0.00034 1.2E-08 64.8 3.4 29 16-44 87-115 (312)
313 1yqt_A RNAse L inhibitor; ATP- 97.0 0.00045 1.5E-08 68.9 4.4 33 17-49 45-77 (538)
314 4dzz_A Plasmid partitioning pr 97.0 0.0018 6.2E-08 55.4 7.8 69 68-150 75-143 (206)
315 3g5u_A MCG1178, multidrug resi 97.0 0.00027 9.2E-09 77.6 2.8 30 18-47 415-444 (1284)
316 3ec1_A YQEH GTPase; atnos1, at 97.0 0.00068 2.3E-08 64.3 5.1 101 93-209 61-161 (369)
317 2gza_A Type IV secretion syste 96.9 0.00043 1.5E-08 65.5 3.7 29 18-46 174-202 (361)
318 3j16_B RLI1P; ribosome recycli 96.9 0.00051 1.8E-08 69.4 4.4 33 17-49 101-133 (608)
319 3vkg_A Dynein heavy chain, cyt 96.9 0.75 2.5E-05 54.5 30.6 29 19-47 1646-1677(3245)
320 2i3b_A HCR-ntpase, human cance 96.9 0.00031 1.1E-08 60.1 2.4 25 20-44 2-26 (189)
321 3thx_A DNA mismatch repair pro 96.9 0.0024 8.3E-08 67.5 9.5 21 19-39 662-682 (934)
322 2cdn_A Adenylate kinase; phosp 96.9 0.00056 1.9E-08 58.7 3.9 23 18-40 19-41 (201)
323 3thx_B DNA mismatch repair pro 96.9 0.0018 6.2E-08 68.2 8.2 24 19-42 673-696 (918)
324 2yv5_A YJEQ protein; hydrolase 96.9 0.0017 5.8E-08 59.8 7.0 86 100-204 76-163 (302)
325 2bdt_A BH3686; alpha-beta prot 96.9 0.0004 1.4E-08 59.0 2.6 22 20-41 3-24 (189)
326 3uie_A Adenylyl-sulfate kinase 96.9 0.0005 1.7E-08 59.1 3.1 26 18-43 24-49 (200)
327 3bk7_A ABC transporter ATP-bin 96.9 0.00067 2.3E-08 68.6 4.4 33 17-49 115-147 (607)
328 3gd7_A Fusion complex of cysti 96.9 0.00056 1.9E-08 65.3 3.6 27 18-44 46-72 (390)
329 1kag_A SKI, shikimate kinase I 96.8 0.00043 1.5E-08 57.7 2.4 23 20-42 5-27 (173)
330 2pt7_A CAG-ALFA; ATPase, prote 96.8 0.00036 1.2E-08 65.2 2.1 28 19-46 171-198 (330)
331 4a74_A DNA repair and recombin 96.8 0.00051 1.7E-08 60.0 2.9 28 17-44 23-50 (231)
332 3b60_A Lipid A export ATP-bind 96.8 0.00062 2.1E-08 68.6 3.8 30 18-47 368-397 (582)
333 3jvv_A Twitching mobility prot 96.8 0.00059 2E-08 64.4 3.1 27 18-44 122-148 (356)
334 1sq5_A Pantothenate kinase; P- 96.8 0.00066 2.3E-08 62.7 3.4 27 17-43 78-104 (308)
335 1ewq_A DNA mismatch repair pro 96.8 0.0034 1.2E-07 65.0 8.9 26 19-44 576-601 (765)
336 1wb9_A DNA mismatch repair pro 96.8 0.0033 1.1E-07 65.4 8.8 35 6-43 597-631 (800)
337 3ozx_A RNAse L inhibitor; ATP 96.7 0.00087 3E-08 66.7 4.2 31 18-48 293-323 (538)
338 2yl4_A ATP-binding cassette SU 96.7 0.00062 2.1E-08 68.8 3.1 30 18-47 369-398 (595)
339 2qor_A Guanylate kinase; phosp 96.7 0.00075 2.6E-08 58.2 3.1 24 19-42 12-35 (204)
340 2ehv_A Hypothetical protein PH 96.7 0.00084 2.9E-08 59.4 3.5 26 15-40 26-51 (251)
341 2ewv_A Twitching motility prot 96.7 0.00072 2.5E-08 64.2 3.0 28 17-44 134-161 (372)
342 1yqt_A RNAse L inhibitor; ATP- 96.7 0.0011 3.7E-08 66.1 4.5 31 18-48 311-341 (538)
343 2vp4_A Deoxynucleoside kinase; 96.7 0.00075 2.6E-08 59.5 2.9 27 16-42 17-43 (230)
344 3bk7_A ABC transporter ATP-bin 96.7 0.0011 3.9E-08 66.9 4.4 31 18-48 381-411 (607)
345 1u0l_A Probable GTPase ENGC; p 96.6 0.0054 1.8E-07 56.3 8.5 102 69-205 63-168 (301)
346 3ec2_A DNA replication protein 96.6 0.00067 2.3E-08 57.1 2.1 26 19-44 38-63 (180)
347 2f1r_A Molybdopterin-guanine d 96.6 0.00045 1.5E-08 58.1 0.9 25 20-44 3-27 (171)
348 2npi_A Protein CLP1; CLP1-PCF1 96.6 0.00058 2E-08 66.7 1.8 30 18-47 137-166 (460)
349 2oap_1 GSPE-2, type II secreti 96.6 0.00089 3.1E-08 66.2 3.2 26 19-44 260-285 (511)
350 1p9r_A General secretion pathw 96.6 0.0008 2.7E-08 64.8 2.8 27 18-44 166-192 (418)
351 3vaa_A Shikimate kinase, SK; s 96.6 0.0012 4.1E-08 56.7 3.6 24 18-41 24-47 (199)
352 3g5u_A MCG1178, multidrug resi 96.6 0.0025 8.6E-08 70.0 6.9 30 18-47 1058-1087(1284)
353 1lw7_A Transcriptional regulat 96.6 0.0009 3.1E-08 63.3 2.9 28 19-46 170-197 (365)
354 4b4t_L 26S protease subunit RP 96.6 0.011 3.7E-07 57.1 10.5 24 19-42 215-238 (437)
355 1jjv_A Dephospho-COA kinase; P 96.6 0.0012 4.1E-08 56.8 3.5 22 20-41 3-24 (206)
356 2kjq_A DNAA-related protein; s 96.6 0.00076 2.6E-08 55.3 2.0 27 18-44 35-61 (149)
357 1cke_A CK, MSSA, protein (cyti 96.5 0.001 3.5E-08 58.0 2.8 23 20-42 6-28 (227)
358 3tqc_A Pantothenate kinase; bi 96.5 0.0013 4.4E-08 61.1 3.5 26 18-43 91-116 (321)
359 1rz3_A Hypothetical protein rb 96.5 0.0013 4.4E-08 56.6 3.3 26 17-42 20-45 (201)
360 3j16_B RLI1P; ribosome recycli 96.5 0.0016 5.4E-08 65.8 4.4 29 20-48 379-407 (608)
361 2wwf_A Thymidilate kinase, put 96.5 0.0017 5.7E-08 55.9 4.0 28 14-41 5-32 (212)
362 3euj_A Chromosome partition pr 96.5 0.00095 3.2E-08 65.3 2.6 28 20-47 30-57 (483)
363 1ex7_A Guanylate kinase; subst 96.5 0.0012 4.3E-08 56.2 3.0 21 22-42 4-24 (186)
364 3end_A Light-independent proto 96.5 0.0062 2.1E-07 55.8 7.8 27 13-39 35-61 (307)
365 2qz4_A Paraplegin; AAA+, SPG7, 96.4 0.018 6.1E-07 51.0 10.5 22 20-41 40-61 (262)
366 2if2_A Dephospho-COA kinase; a 96.4 0.0012 4.2E-08 56.6 2.6 22 20-41 2-23 (204)
367 3l82_B F-box only protein 4; T 96.4 0.0022 7.6E-08 55.5 4.1 106 92-210 114-223 (227)
368 4b4t_K 26S protease regulatory 96.4 0.011 3.9E-07 56.8 9.3 24 19-42 206-229 (428)
369 3lw7_A Adenylate kinase relate 96.4 0.0017 6E-08 53.6 3.2 20 20-39 2-21 (179)
370 3kta_A Chromosome segregation 96.4 0.0014 4.8E-08 55.1 2.6 22 21-42 28-49 (182)
371 1nij_A Hypothetical protein YJ 96.4 0.0015 5.1E-08 60.6 2.9 25 19-43 4-28 (318)
372 1odf_A YGR205W, hypothetical 3 96.4 0.002 6.9E-08 58.9 3.7 27 17-43 29-55 (290)
373 2iw3_A Elongation factor 3A; a 96.4 0.0012 4.1E-08 69.8 2.4 30 18-47 698-727 (986)
374 2o8b_B DNA mismatch repair pro 96.4 0.013 4.4E-07 62.7 10.3 25 19-44 789-813 (1022)
375 1np6_A Molybdopterin-guanine d 96.3 0.0016 5.4E-08 54.9 2.7 23 20-42 7-29 (174)
376 3kb2_A SPBC2 prophage-derived 96.3 0.002 6.7E-08 53.4 3.2 22 20-41 2-23 (173)
377 1ly1_A Polynucleotide kinase; 96.3 0.0023 7.9E-08 53.4 3.5 22 20-41 3-24 (181)
378 1qhx_A CPT, protein (chloramph 96.3 0.0023 7.7E-08 53.5 3.4 22 20-41 4-25 (178)
379 1y63_A LMAJ004144AAA protein; 96.3 0.0028 9.5E-08 53.6 3.9 24 19-42 10-33 (184)
380 2obl_A ESCN; ATPase, hydrolase 96.3 0.0015 5.2E-08 61.3 2.4 28 18-45 70-97 (347)
381 4b4t_J 26S protease regulatory 96.3 0.023 8E-07 54.1 10.6 23 20-42 183-205 (405)
382 3cm0_A Adenylate kinase; ATP-b 96.2 0.0024 8.4E-08 53.7 3.4 22 19-40 4-25 (186)
383 1ukz_A Uridylate kinase; trans 96.2 0.0034 1.2E-07 53.7 4.3 25 16-40 12-36 (203)
384 1sxj_E Activator 1 40 kDa subu 96.2 0.01 3.4E-07 55.4 7.8 22 21-42 38-59 (354)
385 3t61_A Gluconokinase; PSI-biol 96.2 0.002 6.9E-08 55.2 2.7 22 20-41 19-40 (202)
386 3h4m_A Proteasome-activating n 96.2 0.014 4.9E-07 52.6 8.5 23 20-42 52-74 (285)
387 1kht_A Adenylate kinase; phosp 96.2 0.0027 9.2E-08 53.5 3.4 22 20-41 4-25 (192)
388 1t9h_A YLOQ, probable GTPase E 96.2 0.0075 2.6E-07 55.5 6.6 50 100-152 83-132 (307)
389 3a8t_A Adenylate isopentenyltr 96.2 0.005 1.7E-07 57.3 5.4 24 20-43 41-64 (339)
390 2yvu_A Probable adenylyl-sulfa 96.2 0.0038 1.3E-07 52.7 4.2 25 18-42 12-36 (186)
391 2rhm_A Putative kinase; P-loop 96.2 0.0034 1.2E-07 53.0 3.9 22 19-40 5-26 (193)
392 2pez_A Bifunctional 3'-phospho 96.2 0.0025 8.7E-08 53.4 3.1 25 18-42 4-28 (179)
393 2x8a_A Nuclear valosin-contain 96.2 0.0019 6.6E-08 58.5 2.4 21 22-42 47-67 (274)
394 4b4t_I 26S protease regulatory 96.2 0.026 8.9E-07 54.1 10.3 24 19-42 216-239 (437)
395 2w0m_A SSO2452; RECA, SSPF, un 96.2 0.0024 8.1E-08 55.6 2.9 25 18-42 22-46 (235)
396 3trf_A Shikimate kinase, SK; a 96.1 0.003 1E-07 53.2 3.4 21 20-40 6-26 (185)
397 1njg_A DNA polymerase III subu 96.1 0.0061 2.1E-07 52.8 5.4 22 21-42 47-68 (250)
398 1uf9_A TT1252 protein; P-loop, 96.1 0.0037 1.2E-07 53.3 3.7 25 18-42 7-31 (203)
399 3umf_A Adenylate kinase; rossm 96.1 0.0043 1.5E-07 54.1 4.2 24 18-41 28-51 (217)
400 1gvn_B Zeta; postsegregational 96.1 0.0039 1.3E-07 56.9 4.0 24 18-41 32-55 (287)
401 1ak2_A Adenylate kinase isoenz 96.1 0.0037 1.3E-07 55.0 3.7 29 12-40 9-37 (233)
402 1cr0_A DNA primase/helicase; R 96.1 0.0027 9.3E-08 57.9 2.9 27 18-44 34-60 (296)
403 1aky_A Adenylate kinase; ATP:A 96.1 0.0036 1.2E-07 54.4 3.6 22 19-40 4-25 (220)
404 4b4t_H 26S protease regulatory 96.0 0.03 1E-06 54.2 10.2 25 18-42 242-266 (467)
405 2dpy_A FLII, flagellum-specifi 96.0 0.0023 7.7E-08 62.1 2.4 28 18-45 156-183 (438)
406 3iij_A Coilin-interacting nucl 96.0 0.004 1.4E-07 52.2 3.6 22 19-40 11-32 (180)
407 1f2t_A RAD50 ABC-ATPase; DNA d 96.0 0.0044 1.5E-07 50.7 3.7 21 20-40 24-44 (149)
408 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 53.3 3.3 21 21-41 2-22 (205)
409 1nks_A Adenylate kinase; therm 96.0 0.0037 1.3E-07 52.7 3.3 22 20-41 2-23 (194)
410 1qhl_A Protein (cell division 96.0 0.00044 1.5E-08 61.0 -2.7 27 21-47 29-55 (227)
411 1ixz_A ATP-dependent metallopr 96.0 0.0027 9.2E-08 56.5 2.5 22 22-43 52-73 (254)
412 1qf9_A UMP/CMP kinase, protein 96.0 0.005 1.7E-07 51.9 4.0 21 20-40 7-27 (194)
413 4b4t_M 26S protease regulatory 96.0 0.013 4.5E-07 56.5 7.4 24 19-42 215-238 (434)
414 2c95_A Adenylate kinase 1; tra 96.0 0.0044 1.5E-07 52.5 3.6 22 19-40 9-30 (196)
415 2plr_A DTMP kinase, probable t 95.9 0.0046 1.6E-07 53.0 3.7 23 19-41 4-26 (213)
416 2v54_A DTMP kinase, thymidylat 95.9 0.0049 1.7E-07 52.6 3.7 24 19-42 4-27 (204)
417 1xwi_A SKD1 protein; VPS4B, AA 95.9 0.086 2.9E-06 48.6 12.5 25 18-42 44-68 (322)
418 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 52.1 3.5 21 20-40 4-24 (196)
419 2chg_A Replication factor C sm 95.9 0.041 1.4E-06 46.8 9.5 21 21-41 40-60 (226)
420 3cnl_A YLQF, putative uncharac 95.9 0.0032 1.1E-07 56.7 2.4 80 100-206 18-97 (262)
421 3b9p_A CG5977-PA, isoform A; A 95.9 0.049 1.7E-06 49.3 10.5 23 19-41 54-76 (297)
422 1in4_A RUVB, holliday junction 95.8 0.0035 1.2E-07 58.4 2.6 24 20-43 52-75 (334)
423 2cvh_A DNA repair and recombin 95.8 0.0042 1.4E-07 53.6 3.0 24 18-41 19-42 (220)
424 1svm_A Large T antigen; AAA+ f 95.8 0.004 1.4E-07 59.1 3.0 25 18-42 168-192 (377)
425 2grj_A Dephospho-COA kinase; T 95.8 0.0052 1.8E-07 52.5 3.5 23 18-40 11-33 (192)
426 1xjc_A MOBB protein homolog; s 95.8 0.0054 1.9E-07 51.3 3.4 24 19-42 4-27 (169)
427 3nwj_A ATSK2; P loop, shikimat 95.8 0.0036 1.2E-07 55.9 2.5 23 19-41 48-70 (250)
428 3qf7_A RAD50; ABC-ATPase, ATPa 95.8 0.0053 1.8E-07 58.0 3.7 20 21-40 25-44 (365)
429 3fb4_A Adenylate kinase; psych 95.8 0.005 1.7E-07 53.2 3.2 20 21-40 2-21 (216)
430 1nn5_A Similar to deoxythymidy 95.7 0.0059 2E-07 52.5 3.6 23 19-41 9-31 (215)
431 1via_A Shikimate kinase; struc 95.7 0.0048 1.6E-07 51.5 2.8 21 21-41 6-26 (175)
432 1iy2_A ATP-dependent metallopr 95.7 0.0039 1.3E-07 56.3 2.5 22 22-43 76-97 (278)
433 1d2n_A N-ethylmaleimide-sensit 95.7 0.043 1.5E-06 49.1 9.4 24 18-41 63-86 (272)
434 2p5t_B PEZT; postsegregational 95.7 0.0048 1.6E-07 55.0 2.9 25 17-41 30-54 (253)
435 1n0w_A DNA repair protein RAD5 95.7 0.0048 1.6E-07 54.1 2.9 25 18-42 23-47 (243)
436 3dl0_A Adenylate kinase; phosp 95.7 0.0057 2E-07 52.9 3.2 20 21-40 2-21 (216)
437 1zak_A Adenylate kinase; ATP:A 95.7 0.0055 1.9E-07 53.3 3.1 21 20-40 6-26 (222)
438 1m7g_A Adenylylsulfate kinase; 95.7 0.0055 1.9E-07 52.9 3.1 25 18-42 24-48 (211)
439 1vht_A Dephospho-COA kinase; s 95.7 0.0072 2.5E-07 52.3 3.8 22 20-41 5-26 (218)
440 2bwj_A Adenylate kinase 5; pho 95.7 0.0063 2.1E-07 51.6 3.3 22 20-41 13-34 (199)
441 2iw3_A Elongation factor 3A; a 95.7 0.0046 1.6E-07 65.4 2.9 26 18-43 460-485 (986)
442 2ze6_A Isopentenyl transferase 95.7 0.0062 2.1E-07 54.4 3.4 22 20-41 2-23 (253)
443 1zd8_A GTP:AMP phosphotransfer 95.6 0.0062 2.1E-07 53.2 3.3 21 20-40 8-28 (227)
444 3tlx_A Adenylate kinase 2; str 95.6 0.0072 2.5E-07 53.6 3.7 23 18-40 28-50 (243)
445 3zvl_A Bifunctional polynucleo 95.6 0.071 2.4E-06 51.1 11.0 24 18-41 257-280 (416)
446 3cwq_A Para family chromosome 95.6 0.0065 2.2E-07 52.5 3.3 66 68-151 67-134 (209)
447 4aby_A DNA repair protein RECN 95.6 0.002 6.9E-08 61.8 0.0 21 21-41 62-82 (415)
448 1gtv_A TMK, thymidylate kinase 95.5 0.0034 1.2E-07 54.1 1.1 22 21-42 2-23 (214)
449 2iyv_A Shikimate kinase, SK; t 95.5 0.0063 2.2E-07 51.1 2.8 21 20-40 3-23 (184)
450 3eph_A TRNA isopentenyltransfe 95.5 0.013 4.5E-07 55.8 5.2 22 19-40 2-23 (409)
451 2pt5_A Shikimate kinase, SK; a 95.5 0.0079 2.7E-07 49.6 3.3 20 21-40 2-21 (168)
452 1fnn_A CDC6P, cell division co 95.5 0.044 1.5E-06 51.4 8.9 23 21-43 46-68 (389)
453 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0085 2.9E-07 53.7 3.7 22 20-41 5-26 (260)
454 2vli_A Antibiotic resistance p 95.5 0.0059 2E-07 51.1 2.4 21 20-40 6-26 (183)
455 2pbr_A DTMP kinase, thymidylat 95.4 0.0082 2.8E-07 50.6 3.2 21 21-41 2-22 (195)
456 1e6c_A Shikimate kinase; phosp 95.4 0.0073 2.5E-07 50.0 2.9 21 20-40 3-23 (173)
457 1jbk_A CLPB protein; beta barr 95.4 0.0099 3.4E-07 49.5 3.6 23 20-42 44-66 (195)
458 2f6r_A COA synthase, bifunctio 95.4 0.011 3.8E-07 53.6 4.2 23 18-40 74-96 (281)
459 1lv7_A FTSH; alpha/beta domain 95.4 0.0079 2.7E-07 53.5 3.1 23 20-42 46-68 (257)
460 1e4v_A Adenylate kinase; trans 95.4 0.0085 2.9E-07 51.8 3.1 20 21-40 2-21 (214)
461 2z0h_A DTMP kinase, thymidylat 95.4 0.009 3.1E-07 50.5 3.2 21 21-41 2-22 (197)
462 3exa_A TRNA delta(2)-isopenten 95.3 0.01 3.5E-07 54.6 3.7 23 20-42 4-26 (322)
463 4eaq_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 51.7 4.1 25 18-42 25-49 (229)
464 3r20_A Cytidylate kinase; stru 95.3 0.0096 3.3E-07 52.5 3.4 22 19-40 9-30 (233)
465 3qks_A DNA double-strand break 95.3 0.011 3.7E-07 51.0 3.7 21 20-40 24-44 (203)
466 3cr8_A Sulfate adenylyltranfer 95.3 0.0053 1.8E-07 61.2 1.9 27 18-44 368-394 (552)
467 1nlf_A Regulatory protein REPA 95.3 0.0075 2.6E-07 54.5 2.7 26 16-41 27-52 (279)
468 1q3t_A Cytidylate kinase; nucl 95.3 0.0089 3.1E-07 52.6 3.1 24 18-41 15-38 (236)
469 1zuh_A Shikimate kinase; alpha 95.3 0.01 3.5E-07 49.0 3.3 21 20-40 8-28 (168)
470 3be4_A Adenylate kinase; malar 95.2 0.0089 3E-07 51.9 2.9 21 20-40 6-26 (217)
471 2xb4_A Adenylate kinase; ATP-b 95.2 0.011 3.6E-07 51.7 3.3 20 21-40 2-21 (223)
472 1uj2_A Uridine-cytidine kinase 95.2 0.012 4.1E-07 52.3 3.6 23 19-41 22-44 (252)
473 3sr0_A Adenylate kinase; phosp 95.1 0.011 3.9E-07 51.0 3.2 21 21-41 2-22 (206)
474 4fcw_A Chaperone protein CLPB; 95.1 0.013 4.3E-07 53.5 3.7 27 17-43 45-71 (311)
475 1w1w_A Structural maintenance 95.1 0.0096 3.3E-07 57.5 2.9 25 20-44 27-51 (430)
476 2o5v_A DNA replication and rep 95.1 0.0097 3.3E-07 56.0 2.8 21 21-41 28-48 (359)
477 3ux8_A Excinuclease ABC, A sub 95.1 0.0069 2.4E-07 62.0 1.9 23 18-40 347-369 (670)
478 3u61_B DNA polymerase accessor 95.0 0.2 6.9E-06 45.8 11.8 21 21-41 50-70 (324)
479 1jr3_A DNA polymerase III subu 95.0 0.018 6.1E-07 53.9 4.6 22 21-42 40-61 (373)
480 3t15_A Ribulose bisphosphate c 95.0 0.02 6.8E-07 52.2 4.6 23 19-41 36-58 (293)
481 3bos_A Putative DNA replicatio 95.0 0.014 4.7E-07 50.7 3.4 24 19-42 52-75 (242)
482 3vfd_A Spastin; ATPase, microt 95.0 0.069 2.4E-06 50.6 8.5 23 19-41 148-170 (389)
483 1pzn_A RAD51, DNA repair and r 94.9 0.011 3.9E-07 55.4 2.9 26 18-43 130-155 (349)
484 2w58_A DNAI, primosome compone 94.9 0.015 5.1E-07 49.5 3.4 23 20-42 55-77 (202)
485 3qkt_A DNA double-strand break 94.9 0.016 5.3E-07 54.1 3.7 21 20-40 24-44 (339)
486 2p65_A Hypothetical protein PF 94.8 0.013 4.5E-07 48.6 2.7 24 19-42 43-66 (187)
487 1tf7_A KAIC; homohexamer, hexa 94.8 0.012 4E-07 58.5 2.7 26 18-43 38-65 (525)
488 3cf0_A Transitional endoplasmi 94.8 0.014 4.8E-07 53.4 3.0 24 19-42 49-72 (301)
489 3syl_A Protein CBBX; photosynt 94.7 0.02 6.9E-07 52.1 4.0 25 18-42 66-90 (309)
490 1e69_A Chromosome segregation 94.7 0.014 4.9E-07 53.9 2.9 20 21-40 26-45 (322)
491 3foz_A TRNA delta(2)-isopenten 94.7 0.022 7.4E-07 52.3 4.0 22 20-41 11-32 (316)
492 1ltq_A Polynucleotide kinase; 94.6 0.019 6.4E-07 52.3 3.5 22 20-41 3-24 (301)
493 3ake_A Cytidylate kinase; CMP 94.6 0.018 6.2E-07 49.0 3.2 21 21-41 4-24 (208)
494 3crm_A TRNA delta(2)-isopenten 94.6 0.022 7.6E-07 52.7 3.8 22 20-41 6-27 (323)
495 2qmh_A HPR kinase/phosphorylas 94.6 0.024 8E-07 48.6 3.6 24 19-42 34-57 (205)
496 1a7j_A Phosphoribulokinase; tr 94.5 0.013 4.6E-07 53.4 2.2 23 19-41 5-27 (290)
497 3l2o_B F-box only protein 4; s 94.5 0.019 6.4E-07 52.1 2.9 103 93-210 200-308 (312)
498 3d3q_A TRNA delta(2)-isopenten 94.4 0.021 7.3E-07 53.1 3.3 22 20-41 8-29 (340)
499 3ux8_A Excinuclease ABC, A sub 94.4 0.017 5.9E-07 59.0 3.0 19 18-36 43-61 (670)
500 2dr3_A UPF0273 protein PH0284; 94.4 0.024 8.1E-07 49.6 3.4 23 18-40 22-44 (247)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.96 E-value=4.5e-29 Score=225.56 Aligned_cols=208 Identities=37% Similarity=0.661 Sum_probs=146.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+.++|+|+|++|+|||||+|+|+|...+.+.....++|..+......+ .+..+.||||||+++...+.......+..
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34568999999999999999999999988665544445666666666666 78899999999999877666677778888
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
++..+++++|++|+|+|++ +++..+...+..+...++.....|+++|+||+|.+.. ..+.+++.. ....++.++..
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~~-~~~~l~~l~~~ 180 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLRE-APEDIQDLMDI 180 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC---------------CHHHHHHHHH
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHHh-chHHHHHHHHH
Confidence 8888889999999999998 6777888888888887776555699999999998876 677777763 35568999999
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKVESK 229 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~~~~ 229 (371)
|+.++++|++... ++.+..++.+|+..+..++..+++.+|++++|.+++++.+
T Consensus 181 ~~~~~~~~~~~~~-~~~~~~~v~~ll~~i~~~~~~~~g~~~~~~~~~~~e~~~~ 233 (239)
T 3lxx_A 181 FGDRYCALNNKAT-GAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEEEIQ 233 (239)
T ss_dssp HSSSEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHCTTSCC-------------
T ss_pred cCCEEEEEECCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 9999999998763 4566789999999999999999999999999998885443
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.96 E-value=3.7e-28 Score=220.83 Aligned_cols=204 Identities=33% Similarity=0.585 Sum_probs=162.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch-HHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES-EYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~-~~~~~ei~~ 95 (371)
.+..+|+|+|.+|+|||||+|+|+|...+.....+.++|..+......+ ++..+.||||||+++..... +.....+..
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4568999999999999999999999988766555555677777666666 78899999999998765433 334556777
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCC-CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIF-DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
++..+.+++|++|+|+|++ +++..+..++..+...+|.... .|+++|+||+|... ..+++++.......++.++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~---~~~~~~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG---GSLHDYVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT---CCHHHHHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC---CCHHHHHhhcccHHHHHHHH
Confidence 7777779999999999998 6899999999999999886432 48899999999754 46777776544567899999
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHHH
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELKV 226 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~ 226 (371)
.|+.++++|++... ++.++.|+.+|++.|..++..+++.+|++++|+.++.
T Consensus 174 ~~g~~~~~~~~~~~-~~~~~~~v~~Ll~~i~~~~~~~~~~~y~~~~~~~~~~ 224 (247)
T 3lxw_A 174 ECGGRVCAFDNRAT-GREQEAQVEQLLGMVEGLVLEHKGAHYSNEVYELAQV 224 (247)
T ss_dssp HTTTCEEECCTTCC-HHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred HcCCeEEEEeCCCC-ccccHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 99999999998864 5667899999999999999999999999999988874
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.94 E-value=1.7e-25 Score=204.47 Aligned_cols=205 Identities=31% Similarity=0.563 Sum_probs=162.0
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
+..+..+|+|+|++|+|||||+|+|+|...+.....+.++|..+....+.+ .+..+.||||||+.+...........+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 444568999999999999999999999886655444443566666555666 7889999999999887665555666677
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe-CCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT-GGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t-k~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.++..+++++|++|+|+|++ +++..+..++..+...++.....|+++|+| |+|.... .+..++.......++.++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~i~~~~~~~~~~~~ 172 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDYMHDSDNKALSKLV 172 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHHCCCHHHHHHH
T ss_pred HHHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc---cHHHHHHhcchHHHHHHH
Confidence 77777889999999999998 588888888899999888655568888888 9998733 466666544455677788
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNECFAELK 225 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~~~~~~ 225 (371)
..|+.++..|.+ ...||+++.|+.+|++.|..++..+++.+|.++.+....
T Consensus 173 ~~~~~~~~~~~~-~~~SA~~~~gv~~l~~~i~~~~~~~~~~~~~~~~~~~~~ 223 (260)
T 2xtp_A 173 AACGGRICAFNN-RAEGSNQDDQVKELMDCIEDLLMEKNGDHYTNGLYSLIQ 223 (260)
T ss_dssp HHTTTCEEECCT-TCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHC-
T ss_pred HHhCCeEEEecC-cccccccHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 999988776776 778999999999999999999999887889888776665
No 4
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=1.1e-19 Score=161.51 Aligned_cols=177 Identities=12% Similarity=0.151 Sum_probs=116.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~ 94 (371)
...++|+|+|.+|+|||||+|+|+|...........++|............+..+.||||||+.+...... .....+.
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~ 106 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLL 106 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHH
Confidence 34589999999999999999999998732222223445555554444423567899999999876543321 1222233
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........+|++|||+|++.+++..+..++..+... . .|+++|+||+|.... ......... +...+.
T Consensus 107 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~l~ 174 (223)
T 4dhe_A 107 SSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT---G--KPIHSLLTKCDKLTR--QESINALRA-----TQKSLD 174 (223)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG---C--CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEeccccCCh--hhHHHHHHH-----HHHHHH
Confidence 2323335668999999999988888887777777641 2 399999999998765 343333332 333333
Q ss_pred hc-------CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LC-------DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~-------~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+ ..+++. .||+++.|+.+|++.|.+.+...
T Consensus 175 ~~~~~~~~~~~~~~~------~SA~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 175 AYRDAGYAGKLTVQL------FSALKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp HHHHHTCCSCEEEEE------EBTTTTBSHHHHHHHHHHHHC--
T ss_pred hhhhcccCCCCeEEE------eecCCCcCHHHHHHHHHHhcCcc
Confidence 32 223333 57788999999999999887654
No 5
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=1.6e-19 Score=168.99 Aligned_cols=180 Identities=15% Similarity=0.232 Sum_probs=122.2
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC-CcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD-GQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
++++...|+++|++|+|||||+|+|+|...... ....++|.......... . +..+.||||||+.+... .......+
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~-s~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~~-~~~l~~~~ 82 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSII-SPKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPKK-SDVLGHSM 82 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCC-CSSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCCT-TCHHHHHH
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhCCCcccc-CCCCCceeeEEEEEEec-CCCCeEEEEECcCCCcccc-chhHHHHH
Confidence 344557999999999999999999999886322 12233444333333444 5 78999999999987541 23455556
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
......++..+|++++|+|++.+.+..+... +..+... ..|+++|+||+|..... ..+...+ ..+
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~~~~-~~~~~~~--------~~l 148 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKIGPA-KNVLPLI--------DEI 148 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGSSSG-GGGHHHH--------HHH
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-----CCCEEEEEECccCCCCH-HHHHHHH--------HHH
Confidence 6666666778899999999998888777665 5555541 24999999999987331 3333222 233
Q ss_pred HHhcC--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 173 LQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 173 ~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
...++ ..++ ..||+++.|+.+|++.+...++.... .|..
T Consensus 149 ~~~~~~~~~i~------~vSA~~g~gv~~L~~~l~~~l~~~~~-~~~~ 189 (308)
T 3iev_A 149 HKKHPELTEIV------PISALKGANLDELVKTILKYLPEGEP-LFPE 189 (308)
T ss_dssp HHHCTTCCCEE------ECBTTTTBSHHHHHHHHHHHSCBCCC-SSCT
T ss_pred HHhccCCCeEE------EEeCCCCCCHHHHHHHHHHhCccCCC-CCCc
Confidence 34333 2333 36788899999999999999886433 4443
No 6
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.81 E-value=1e-18 Score=151.67 Aligned_cols=171 Identities=15% Similarity=0.255 Sum_probs=105.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|+|+|...........+.|...... .. +..+.+|||||+.+...+.. .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~--~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFY--II--NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEE--EE--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEE--EE--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 346899999999999999999999886332222223334333322 22 34689999999887654332 1112222
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........+|++++|+|++++.+..+..++.++... . .|+++|+||+|.... ..+...... +...+.
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 164 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY---G--IPVIVIATKADKIPK--GKWDKHAKV-----VRQTLN 164 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHT
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh--HHHHHHHHH-----HHHHHc
Confidence 2222233566999999999988888877777776641 2 399999999998765 334333222 333222
Q ss_pred h-cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 L-CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~-~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. .+.+++. .|++++.|+.+|++.+.+.+.
T Consensus 165 ~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 165 IDPEDELIL------FSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp CCTTSEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred ccCCCceEE------EEccCCCCHHHHHHHHHHHhc
Confidence 1 1223333 577788999999999887654
No 7
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.81 E-value=3.1e-19 Score=166.40 Aligned_cols=166 Identities=20% Similarity=0.196 Sum_probs=114.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
...|+|+|++|+|||||+|+|+|........ .+++|.......... .+..+.||||||+.+.. ......+.....
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~-~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~~ 81 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGVKVAPISP-RPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEVY 81 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSCCSCCCS-SSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCceeeecC-CCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHHH
Confidence 3579999999999999999999987632211 122333222222233 67789999999998753 234444566666
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhh-HHHHhcccCCchHHHHHHhcC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKT-LEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~-l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.++..+|++++|+|++++++..+..++..+....+ . .|+++|+||+|.... .. +.+.+. .+ ++
T Consensus 82 ~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~-~--~p~ilV~NK~Dl~~~--~~~~~~~~~--------~~---~~ 145 (301)
T 1wf3_A 82 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVG-K--VPILLVGNKLDAAKY--PEEAMKAYH--------EL---LP 145 (301)
T ss_dssp HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTT-T--SCEEEEEECGGGCSS--HHHHHHHHH--------HT---ST
T ss_pred HHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcC-C--CCEEEEEECcccCCc--hHHHHHHHH--------Hh---cC
Confidence 77889999999999998888887766666665432 2 499999999998755 22 222222 11 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
|....+.||+++.|+++|++.+...++.
T Consensus 146 -----~~~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 -----EAEPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp -----TSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred -----cCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 1122346888999999999999887765
No 8
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.80 E-value=3.2e-18 Score=148.13 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=113.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~ 94 (371)
...++|+|+|.+|+|||||+|+|+|...... ....+.|...... . .+..+.++||||+........ .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~--~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFY--L--VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEE--E--ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEE--E--ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 3457999999999999999999999873222 2223333333221 1 345688999999876533221 1222333
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........+|++++|+|++.+.+..+...+.++... . .|+++|+||+|.... ......... +...+.
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~p~i~v~nK~Dl~~~--~~~~~~~~~-----~~~~~~ 163 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL---N--IPFTIVLTKMDKVKM--SERAKKLEE-----HRKVFS 163 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGSCG--GGHHHHHHH-----HHHHHH
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc---C--CCEEEEEEChhcCCh--HHHHHHHHH-----HHHHHh
Confidence 3333344677999999999877888777777777654 2 399999999998755 444443333 444554
Q ss_pred hcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+ .+++. .||+++.|+.+|++.+.+.+..
T Consensus 164 ~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 164 KYGEYTIIP------TSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp SSCCSCEEE------CCTTTCTTHHHHHHHHHHHHC-
T ss_pred hcCCCceEE------EecCCCCCHHHHHHHHHHHhhc
Confidence 323 23443 5777889999999999887754
No 9
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.80 E-value=4e-19 Score=162.48 Aligned_cols=154 Identities=24% Similarity=0.332 Sum_probs=111.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|.+|+|||||+|+|+|........ ..+.|.......+.+ ++..+.||||||+.+.........+.+..++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSP-FQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCS-SCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCC-CCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 45899999999999999999999987532221 233444444444555 7889999999999877655555555555554
Q ss_pred hhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...++|++|||++++ .+++..+..++..+...++...+.|+++|+||+|....+...+++|+.. ....++.++..+
T Consensus 113 --~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~-~~~~l~~~i~~~ 189 (262)
T 3def_A 113 --VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK-RSDSLLKTIRAG 189 (262)
T ss_dssp --TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh-hhHHHHHHHHHH
Confidence 245789999999876 3577788889999999998777779999999999865544677777753 223355555544
No 10
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.80 E-value=2.2e-18 Score=158.24 Aligned_cols=196 Identities=21% Similarity=0.319 Sum_probs=127.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|+|+|........ ..++|..+....... .+..+.||||||+.+...........+..++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~-~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISP-FQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCS-SSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccC-CCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 45899999999999999999999987633222 233343333333444 7778999999999876544343444443332
Q ss_pred hhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...++|++|||+|++ .+++..+..++..+...++...+.|+++|+||+|...+.+.++++|+.. ....++.++...
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~~-~~~~l~~~~~~~ 192 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFSK-RSEALLQVVRSG 192 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHHH-HHHHHHHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHHH-HHHHHHHHHHHh
Confidence 245789999998876 3677778888999988888765669999999999876544467777653 222334333311
Q ss_pred ----------CCceEeecCcchh---------hHhhHHhHHHHHHHHHHHHhhcCCCCCCh
Q 040649 177 ----------DNRWVLFDNKTKY---------EAKRTEQVQQLLSLVNAVNVKNGGQPYTN 218 (371)
Q Consensus 177 ----------~~r~~~f~~~~~~---------sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~ 218 (371)
..++.+..+.... ..........|+..|..++...+...+.+
T Consensus 193 ~~~~~~~~~~~~p~~~v~~~~~~~~~~~~~~v~~~~~~w~~~Ll~~l~~~~~~~~~~l~~d 253 (270)
T 1h65_A 193 ASLKKDAQASDIPVVLIENSGRCNKNDSDEKVLPNGIAWIPHLVQTITEVALNKSESIFVD 253 (270)
T ss_dssp TTCCTTSGGGCCCEEECCCCTTCCBCTTSCBBCTTSCBHHHHHHHHHHHHHTSSSCCEECC
T ss_pred hhhhhhhhhccCCEEEEeCCCcccccCCCceECCCCCCcHHHHHHHHHHHHhcCCCceecC
Confidence 1233333332110 00111236699999999998887765544
No 11
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.78 E-value=6.1e-18 Score=151.13 Aligned_cols=178 Identities=16% Similarity=0.163 Sum_probs=104.7
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
|.......+|+|+|.+|+|||||+|+|+|...... ...+.|.......... .+..+.||||||+.+..........
T Consensus 23 P~~~~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~~- 98 (228)
T 2qu8_A 23 PSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQ--SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTIE- 98 (228)
T ss_dssp CSCCTTSEEEEEECSTTSSHHHHHHHHTTTCEEEE--CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHHH-
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhHH-
Confidence 33334568999999999999999999999875322 1233344444444444 6678999999999764321111100
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHH---HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQE---EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL 169 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~---~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l 169 (371)
...+......+|++|+|+|++++.+-. ...++..+...++ ..|+++|+||+|........... .. .+
T Consensus 99 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~---~~piilv~nK~Dl~~~~~~~~~~-~~-----~~ 168 (228)
T 2qu8_A 99 -MTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFS---NKSIVIGFNKIDKCNMDSLSIDN-KL-----LI 168 (228)
T ss_dssp -HHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC----CCCEEEEEECGGGCC--CCCHHH-HH-----HH
T ss_pred -HHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhc---CCcEEEEEeCcccCCchhhHHHH-HH-----HH
Confidence 111222356779999999998654422 2334444433211 24999999999987542111110 00 13
Q ss_pred HHHHHhcC--CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+ ..++ ..||+++.|+.+|++.+...+..
T Consensus 169 ~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 205 (228)
T 2qu8_A 169 KQILDNVKNPIKFS------SFSTLTGVGVEQAKITACELLKN 205 (228)
T ss_dssp HHHHHHCCSCEEEE------ECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCceEE------EEecccCCCHHHHHHHHHHHHHH
Confidence 34444443 2333 36788899999999998876654
No 12
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.78 E-value=1.2e-17 Score=152.17 Aligned_cols=172 Identities=13% Similarity=0.134 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH--HHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE--YVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~--~~~~ei~~~~ 97 (371)
++|+|+|.+|+|||||+|+|+|...... ..+++|.......+.+ ++..+.||||||+.+...... ...+.+...
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~--~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~- 77 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVG--NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQ- 77 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEE--ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHH-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCcc--CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHH-
Confidence 5899999999999999999999875332 2345666666655665 778999999999987643100 111112211
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
......+|++|+|+|+++ . .....+...+. .. ..|+++|+||+|..... . ....+..+...++
T Consensus 78 ~~~~~~~d~vi~VvDas~-~-~~~~~l~~~l~---~~--~~pvilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg 140 (256)
T 3iby_A 78 SVIDLEYDCIINVIDACH-L-ERHLYLTSQLF---EL--GKPVVVALNMMDIAEHR--G--------ISIDTEKLESLLG 140 (256)
T ss_dssp HHHHSCCSEEEEEEEGGG-H-HHHHHHHHHHT---TS--CSCEEEEEECHHHHHHT--T--------CEECHHHHHHHHC
T ss_pred HHhhCCCCEEEEEeeCCC-c-hhHHHHHHHHH---Hc--CCCEEEEEEChhcCCcC--C--------cHHHHHHHHHHcC
Confidence 112267899999999984 1 22222333332 22 24999999999965331 0 1112344445556
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNEC 220 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~~ 220 (371)
.++++ .||+++.|+++|++.+... .... ..|...+
T Consensus 141 ~~vi~------~SA~~g~gi~el~~~i~~~-~~~~-~~y~~~~ 175 (256)
T 3iby_A 141 CSVIP------IQAHKNIGIPALQQSLLHC-SQKI-KPLKLSL 175 (256)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHTC-CSCC-CCCCCCC
T ss_pred CCEEE------EECCCCCCHHHHHHHHHhh-hcCc-ccCCHHH
Confidence 55555 6788899999999999887 3322 2566543
No 13
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.77 E-value=5.3e-17 Score=167.41 Aligned_cols=123 Identities=17% Similarity=0.220 Sum_probs=77.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcc-ce----------eEEE--------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAI-TK----------TCEM-------------------------- 60 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~-t~----------~~~~-------------------------- 60 (371)
+..+|+|+|.+|+|||||+|+|+|....+.+..+... .+ +..+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 4589999999999999999999999865543322110 00 0000
Q ss_pred ---------------EeEEeeC---CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHH
Q 040649 61 ---------------KTTVLKD---GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE 122 (371)
Q Consensus 61 ---------------~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~ 122 (371)
..+.++. ...+.||||||+.+... ....+..++..+|++|||+|++++++..+.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~ 219 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGER 219 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHHH
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhHH
Confidence 0000000 04689999999764211 122333344567999999999988887776
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 123 AAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 123 ~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+... +. ....|+++|+||+|....
T Consensus 220 ~~l~~~---l~-~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 220 RYLENY---IK-GRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHHH---TT-TSCCCEEEEEECGGGGGG
T ss_pred HHHHHH---HH-hhCCCEEEEEECcccccc
Confidence 554321 21 112489999999997643
No 14
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.76 E-value=5.2e-18 Score=156.14 Aligned_cols=172 Identities=17% Similarity=0.247 Sum_probs=99.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC----CccceeEEEEeEEee-CCc--EEEEEeCCCCCCCCcch---HH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SAITKTCEMKTTVLK-DGQ--VVNVIDTPGLFDSSAES---EY 88 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~~--~i~liDTPG~~~~~~~~---~~ 88 (371)
..+|+|+|.+|+|||||+|+|+|...+...... ...|........... ++. .++||||||+++..... ..
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~ 87 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 87 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHH
Confidence 479999999999999999999998876543210 022222222222221 332 89999999997653321 11
Q ss_pred HH----HHHHHHHhh---------hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch
Q 040649 89 VS----KEIAKCIGM---------AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE 154 (371)
Q Consensus 89 ~~----~ei~~~~~~---------~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~ 154 (371)
+. ..+..++.. ....+|+++|+++.. .++...+..+++.+.. ..|+++|+||+|....
T Consensus 88 i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~-- 159 (274)
T 3t5d_A 88 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP-- 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH--
T ss_pred HHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH--
Confidence 11 111222221 123578999999665 5788888777776654 2499999999998765
Q ss_pred hhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 155 KTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 155 ~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..+... +...+..++.+++.| |+.++.++.+|++.+...++
T Consensus 160 ~e~~~~~~~-----i~~~l~~~~i~v~~~------sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 160 EECQQFKKQ-----IMKEIQEHKIKIYEF------PETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HHHHHHHHH-----HHHHHHHTTCCCCCC-----------------CHHHHHTCS
T ss_pred HHHHHHHHH-----HHHHHHHcCCeEEcC------CCCCChhHHHHHHHHhcCCC
Confidence 555555443 566666677776665 45567899999998887654
No 15
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.76 E-value=3.7e-18 Score=145.72 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=105.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|.+|+|||||+|++++....... .++++.......+.+ ++..+.+|||||.......
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~----------- 71 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM----------- 71 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------
Confidence 34579999999999999999999987764322 122333333333444 6778999999997654221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
....+..+|++++|+|++++........+..+. ... .|+++|+||+|........+...+.. ...+...+
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 141 (178)
T 2lkc_A 72 RARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQELME-----YNLVPEEW 141 (178)
T ss_dssp CCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHHTT-----TTCCBTTT
T ss_pred HHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHHHh-----cCcChhHc
Confidence 234567889999999998766666555554432 223 39999999999875422222222221 00011111
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+..+.. ...||+++.|+.+|++.+...+...
T Consensus 142 ~~~~~~----~~~Sa~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 142 GGDTIF----CKLSAKTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp TSSEEE----EECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred CCcccE----EEEecCCCCCHHHHHHHHHHhhhhh
Confidence 111112 2367888999999999998776653
No 16
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.76 E-value=5.2e-18 Score=146.77 Aligned_cols=169 Identities=15% Similarity=0.089 Sum_probs=104.5
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHH
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
.........+|+|+|++|+|||||+|.+++...........+. ......... .....+.++||||.......
T Consensus 15 ~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----- 87 (189)
T 2gf9_A 15 VPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGI--DFKVKTVYRHDKRIKLQIWDTAGQERYRTI----- 87 (189)
T ss_dssp CCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCC--EEEEEEEEETTEEEEEEEEECCSCCSSCCS-----
T ss_pred CCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeE--EEEEEEEEECCeEEEEEEEeCCCcHHHhhh-----
Confidence 3333344579999999999999999999987753322222222 222222222 12347899999997653221
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL 169 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l 169 (371)
....+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ..
T Consensus 88 ------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~ 150 (189)
T 2gf9_A 88 ------TTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAE---------DG 150 (189)
T ss_dssp ------GGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HH
T ss_pred ------HHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHH---------HH
Confidence 2345678899999999984332222 23444555443223 499999999997643111111 13
Q ss_pred HHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+...++..++. .|++++.|+.+|++.+...+..
T Consensus 151 ~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 151 RRLADDLGFEFFE------ASAKENINVKQVFERLVDVICE 185 (189)
T ss_dssp HHHHHHHTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 3444445544443 5777889999999998876643
No 17
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.7e-18 Score=148.23 Aligned_cols=166 Identities=20% Similarity=0.091 Sum_probs=101.6
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
......+|+|+|.+|+|||||+|.+++...........+.+.. ...... .....+.++||||.....
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~~---------- 86 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNELHKFLIWDTAGQERFH---------- 86 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSSEEEEEEEEECCSGGGG----------
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCEEEEEEEEcCCCchhhH----------
Confidence 3345689999999999999999999987753222222222222 222222 134578999999965321
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
......+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ .+..+
T Consensus 87 -~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~---------~~~~~ 154 (192)
T 2fg5_A 87 -SLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLK---------DAKEY 154 (192)
T ss_dssp -GGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHH
T ss_pred -hhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHH---------HHHHH
Confidence 112234567799999999985433222 33444555443223 499999999997632111121 13445
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+..++. .|++++.|+.+|++.+.+.+..
T Consensus 155 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (192)
T 2fg5_A 155 AESIGAIVVE------TSAKNAINIEELFQGISRQIPP 186 (192)
T ss_dssp HHTTTCEEEE------CBTTTTBSHHHHHHHHHHTCC-
T ss_pred HHHcCCEEEE------EeCCCCcCHHHHHHHHHHHHHh
Confidence 5545544443 5777889999999999876654
No 18
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.75 E-value=2.5e-18 Score=146.92 Aligned_cols=164 Identities=20% Similarity=0.169 Sum_probs=102.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|++|+|||||+|.|+|....... ...++|.......+.+ ++..+.++||||+...... .........
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~---~~~~~~~~~ 77 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASDE---VERIGIERA 77 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSSH---HHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchhH---HHHHHHHHH
Confidence 4579999999999999999999987642111 1223343333334444 6778999999998754211 111111112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
...+..+|++++|+|++++.+.....++..+....... .|+++|+||+|+.... . .+. ...+
T Consensus 78 ~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~-~---~~~------------~~~~ 139 (172)
T 2gj8_A 78 WQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAK--LPITVVRNKADITGET-L---GMS------------EVNG 139 (172)
T ss_dssp HHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTT--CCEEEEEECHHHHCCC-C---EEE------------EETT
T ss_pred HHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccC--CCEEEEEECccCCcch-h---hhh------------hccC
Confidence 23456789999999998666554555666666554333 4999999999964321 0 000 0011
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+ ...||+++.|+++|++.+...+..
T Consensus 140 ~~~------~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 140 HAL------IRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEE------EECCTTTCTTHHHHHHHHHHHC--
T ss_pred Cce------EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 122 236888999999999998876543
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=1.1e-17 Score=142.88 Aligned_cols=163 Identities=17% Similarity=0.162 Sum_probs=102.8
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+..+|+|+|++|+|||||+|+|++...... ...+.+.......+.+ ++ ..+.++||||......
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~--------- 73 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFRT--------- 73 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCSS---------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhhh---------
Confidence 34568999999999999999999998876422 2233343344444444 44 5789999999543221
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
....++..+|++++|+|++++.+... ..++..+....+ ..|+++|+||+|.......... ....+
T Consensus 74 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~ 139 (181)
T 3tw8_B 74 --ITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD---DVCRILVGNKNDDPERKVVETE---------DAYKF 139 (181)
T ss_dssp --CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCT---TSEEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred --hHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCCCchhcccCHH---------HHHHH
Confidence 12345678899999999985432222 223444444332 2499999999997643111111 12334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+.+++. .|++++.|+.+|++.+...+..
T Consensus 140 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 171 (181)
T 3tw8_B 140 AGQMGIQLFE------TSAKENVNVEEMFNCITELVLR 171 (181)
T ss_dssp HHHHTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHcCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 4444555554 5777889999999998876654
No 20
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.74 E-value=9.3e-18 Score=154.42 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=115.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch--HHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES--EYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~--~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|+|+|...... ..+++|.......+.+ .+..+.+|||||+.+..... ......+..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~--~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~- 78 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVG--NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIAC- 78 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEE--ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHH-
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccC--CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHH-
Confidence 47899999999999999999999875222 2345666665555555 67889999999998764211 011112222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.......+|++++|+|+++ + .....+...+... . .|+++|+||+|..... .+ ...+..+...+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~~--~~--------~~~~~~l~~~l 141 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEKQ--NI--------RIEIDALSARL 141 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHHT--TE--------EECHHHHHHHH
T ss_pred HHHhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhhh--hH--------HHHHHHHHHhc
Confidence 2223468899999999984 2 2334444555543 2 3999999999965321 10 11134444555
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC--CCCCChHHHHHH
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG--GQPYTNECFAEL 224 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~--~~~y~~~~~~~~ 224 (371)
+.++++ .||+++.|+.+|++.+...+.... ...|...+-..+
T Consensus 142 g~~~i~------~SA~~g~gi~el~~~i~~~~~~~~~~~~~~~~~l~~~~ 185 (274)
T 3i8s_A 142 GCPVIP------LVSTRGRGIEALKLAIDRYKANENVELVHYAQPLLNEA 185 (274)
T ss_dssp TSCEEE------CCCGGGHHHHHHHHHHHTCCCCCCCCCCCCCHHHHHHH
T ss_pred CCCEEE------EEcCCCCCHHHHHHHHHHHHhcCCCcccCCCHHHHHHH
Confidence 655555 577789999999999988776442 224665544433
No 21
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.74 E-value=1.5e-17 Score=140.64 Aligned_cols=161 Identities=14% Similarity=0.129 Sum_probs=99.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...+.......... ++ ..+.++||||... +..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 70 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHA 70 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCEEEEEEEES-SSCEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhh
Confidence 34799999999999999999999876532211 12222222223333 33 3678999999653 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....+.. .|+++|+||+|.........+ ....+..
T Consensus 71 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (170)
T 1z08_A 71 LGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQ---------EAESYAE 139 (170)
T ss_dssp --CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHH---------HHHHHHH
Confidence 33445678899999999985432222 33444555544433 399999999997643111111 1334455
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.++++.+.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 140 SVGAKHYH------TSAKQNKGIEELFLDLCKRMI 168 (170)
T ss_dssp HTTCEEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------ecCCCCCCHHHHHHHHHHHHh
Confidence 55544443 577788999999999887654
No 22
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.74 E-value=1.6e-17 Score=139.22 Aligned_cols=158 Identities=21% Similarity=0.233 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+++|++|+|||||+|.+++...... ....++|.......... ++..+.++||||...... ....+......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVV-ADVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeec-cCCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 6899999999999999999998764211 11233343444444444 677899999999876431 11223334445
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN- 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~- 178 (371)
.+..+|++++|+|++.+++..+......+... . .|+++|+||+|..... .. +..+. ..+.
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~~~~-~~------------~~~~~-~~~~~ 136 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK---G--KPVILVATKVDDPKHE-LY------------LGPLY-GLGFG 136 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH---T--CCEEEEEECCCSGGGG-GG------------CGGGG-GGSSC
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc---C--CCEEEEEECcccccch-Hh------------HHHHH-hCCCC
Confidence 56788999999999977888777777766652 2 3999999999976431 11 11111 2232
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.++ ..|++++.|+.+|++.+.+.+
T Consensus 137 ~~~------~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 137 DPI------PTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp SCE------ECBTTTTBSHHHHHHHHHHHC
T ss_pred CeE------EEecccCCChHHHHHHHHHhC
Confidence 333 367888999999999887654
No 23
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.74 E-value=2.5e-17 Score=151.31 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=109.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|+|+|.... . ...+++|.......+.+ .+..+.+|||||+.+...... .+......
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~-~-~~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~---~~~~~~~~ 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQH-V-GNWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSI---DELIARNF 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEE-E-EECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCH---HHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcc-c-CCCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCH---HHHHHHHh
Confidence 478999999999999999999998762 2 22345565555555555 778899999999987543221 11222222
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|+++. ......+..+... +. .|+++|+||+|..... ........+...++.
T Consensus 77 ~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~-~~---~p~ilv~NK~Dl~~~~----------~~~~~~~~l~~~lg~ 140 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTCL--MRNLFLTLELFEM-EV---KNIILVLNKFDLLKKK----------GAKIDIKKMRKELGV 140 (271)
T ss_dssp HHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHT-TC---CSEEEEEECHHHHHHH----------TCCCCHHHHHHHHSS
T ss_pred hhccCCcEEEEEecCCcc--hhhHHHHHHHHhc-CC---CCEEEEEEChhcCccc----------ccHHHHHHHHHHcCC
Confidence 234688999999999842 2222333333332 21 3999999999965221 011114445555566
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
++++ .|++++.|+.+|++.+...+....
T Consensus 141 ~~~~------~Sa~~g~gi~~l~~~i~~~~~~~~ 168 (271)
T 3k53_A 141 PVIP------TNAKKGEGVEELKRMIALMAEGKV 168 (271)
T ss_dssp CEEE------CBGGGTBTHHHHHHHHHHHHHTCC
T ss_pred cEEE------EEeCCCCCHHHHHHHHHHHHhccc
Confidence 6554 677888999999999998887654
No 24
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.74 E-value=7.9e-18 Score=142.28 Aligned_cols=162 Identities=18% Similarity=0.087 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+..+|+|+|++|+|||||+|++++...........+.+ .......+. ....+.++||||.... ...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~~-----------~~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNELHKFLIWDTAGLERF-----------RAL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCeEEEEEEEcCCCchhh-----------hcc
Confidence 34799999999999999999999887533222222222 222223331 2357899999997532 112
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|.........+ ....+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~~v~~~---------~~~~~~~~ 140 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMER---------DAKDYADS 140 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccccccCHH---------HHHHHHHH
Confidence 2234567799999999985433222 33445555543333 489999999997643111111 13334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+.+++. .|++++.|+.+|++.+.+.+.
T Consensus 141 ~~~~~~~------~Sa~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 141 IHAIFVE------TSAKNAININELFIEISRRIP 168 (170)
T ss_dssp TTCEEEE------CBTTTTBSHHHHHHHHHHHCC
T ss_pred cCCEEEE------EeCCCCcCHHHHHHHHHHHHh
Confidence 4544443 577788999999999887654
No 25
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.74 E-value=1.2e-17 Score=142.47 Aligned_cols=163 Identities=13% Similarity=0.123 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|.+++...........+.+ ......... ....+.++||||..... .
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 79 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE--FGTRIIEVSGQKIKLQIWDTAGQERFR-----------A 79 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC--EEEEEEEETTEEEEEEEEECTTGGGTC-----------H
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE--EEEEEEEECCeEEEEEEEECCCChHhh-----------h
Confidence 345899999999999999999999877532221112222 222222231 22478999999954321 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|.........+ .+..+..
T Consensus 80 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 148 (179)
T 1z0f_A 80 VTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYE---------EAKQFAE 148 (179)
T ss_dssp HHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH---------HHHHHHH
Confidence 12233456799999999985433222 23444455544333 499999999997633111111 1344455
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .|++++.|+.++++.+.+.+.
T Consensus 149 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 177 (179)
T 1z0f_A 149 ENGLLFLE------ASAKTGENVEDAFLEAAKKIY 177 (179)
T ss_dssp HTTCEEEE------CCTTTCTTHHHHHHHHHHHHC
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 45544444 577788999999999876653
No 26
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.74 E-value=1.4e-17 Score=142.52 Aligned_cols=164 Identities=19% Similarity=0.146 Sum_probs=101.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|++|+|||||+|.+++...........+.+ .......+. ....+.++||||.... ..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 76 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQERY-----------HS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--EEEEEEEETTEEEEEEEEECCCSGGG-----------GG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--EEEEEEEECCEEEEEEEEeCCCChhh-----------hh
Confidence 345799999999999999999999876543322222222 222223331 2347899999995432 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFS-QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~-~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+ .....++..+....... .|+++|+||+|.........+ .+..+..
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~---------~~~~~~~ 145 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAE---------DAQTYAQ 145 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHH---------HHHHHHH
Confidence 12334567899999999985433 22234455555543323 499999999998654211121 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++. .|++++.|+.+|++.+...+..
T Consensus 146 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 175 (181)
T 2efe_B 146 ENGLFFME------TSAKTATNVKEIFYEIARRLPR 175 (181)
T ss_dssp HTTCEEEE------CCSSSCTTHHHHHHHHHHTCC-
T ss_pred HcCCEEEE------EECCCCCCHHHHHHHHHHHHHh
Confidence 44544444 5677889999999998776543
No 27
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=4.7e-17 Score=141.47 Aligned_cols=172 Identities=14% Similarity=0.079 Sum_probs=101.4
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHH
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSK 91 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ 91 (371)
.+++..+..+|+|+|.+|+|||||+|.+++........ ..|.......+.. .+..+.||||||....
T Consensus 10 ~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~--------- 76 (199)
T 4bas_A 10 HMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI---TATVGYNVETFEK-GRVAFTVFDMGGAKKF--------- 76 (199)
T ss_dssp ------CEEEEEEECCTTSCHHHHHHHHSCCC----CC---CCCSSEEEEEEEE-TTEEEEEEEECCSGGG---------
T ss_pred cccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc---ccccceeEEEEEe-CCEEEEEEECCCCHhH---------
Confidence 34455567899999999999999999999887643111 1122233333343 6778999999997542
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC---------CCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK---------KIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~---------~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
......++..+|++|+|+|++++.+-.. ...++...+.. ....|+++|+||+|+... ....++..
T Consensus 77 --~~~~~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~ 150 (199)
T 4bas_A 77 --RGLWETYYDNIDAVIFVVDSSDHLRLCV--VKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA--KTAAELVE 150 (199)
T ss_dssp --GGGGGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC--CCHHHHHH
T ss_pred --HHHHHHHHhcCCEEEEEEECCcHHHHHH--HHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC--CCHHHHHH
Confidence 2233455778999999999985433222 11222222221 012499999999998765 33332222
Q ss_pred ccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 163 LECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. .+..+....+..++ ..||+++.|+.++++.|...+...
T Consensus 151 ~~---~~~~~~~~~~~~~~------~~Sa~~g~gv~~l~~~l~~~~~~~ 190 (199)
T 4bas_A 151 IL---DLTTLMGDHPFVIF------ASNGLKGTGVHEGFSWLQETASRQ 190 (199)
T ss_dssp HH---THHHHHTTSCEEEE------ECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred Hh---cchhhccCCeeEEE------EeeCCCccCHHHHHHHHHHHHHHH
Confidence 10 01122122222222 367888999999999998876654
No 28
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=145.69 Aligned_cols=161 Identities=19% Similarity=0.117 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.|++........ .............. ..+..+.|+||||....... .
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~-----------~ 91 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRNEFSHDSR--TTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI-----------T 91 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCSSCC--CCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT-----------H
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh-----------h
Confidence 4799999999999999999999876532221 11122222222222 12347899999998653221 2
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++.+.+... ..++..+...... ..|+++|+||+|.......... ....+....
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 160 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEA--TIVVMLVGNKSDLSQAREVPTE---------EARMFAENN 160 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECCCcccccccCHH---------HHHHHHHHc
Confidence 233567799999999984332211 2233333332222 3499999999997643111111 133344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+..++. .|++++.|+.+|++.+...+.
T Consensus 161 ~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 187 (193)
T 2oil_A 161 GLLFLE------TSALDSTNVELAFETVLKEIF 187 (193)
T ss_dssp TCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred CCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 544444 577788999999999876554
No 29
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.73 E-value=7.8e-18 Score=142.18 Aligned_cols=162 Identities=15% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...+|+|+|++|+|||||+|++++...........+. .......... .+..+.++||||.... ...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~D~~G~~~~-----------~~~ 71 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGA--AFLTQTVCLDDTTVKFEIWDTAGQERY-----------HSL 71 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSE--EEEEEEEEETTEEEEEEEEEECCSGGG-----------GGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccce--EEEEEEEEECCEEEEEEEEeCCCcHHh-----------hhh
Confidence 3479999999999999999999976653222112222 2222223331 2447899999996532 111
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 140 (170)
T 1r2q_A 72 APMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQ---------EAQSYADD 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHH---------HHHHHHHH
Confidence 2334567899999999985432221 23444444443333 399999999997643111111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++. .|++++.|+.+|++.+...+.
T Consensus 141 ~~~~~~~------~Sa~~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 141 NSLLFME------TSAKTSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHTSC
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 4444443 577788999999999877654
No 30
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.73 E-value=4.3e-17 Score=141.33 Aligned_cols=164 Identities=18% Similarity=0.151 Sum_probs=106.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|+|++....... ....+.......+.+ ++ ..+.|+||||......
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 80 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 80 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCC--CCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGCT----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhhh----------
Confidence 34579999999999999999999987653322 233333344444444 44 4689999999543211
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.....+..+|++++|+|++++.+-. ...++..+....... .|+++|+||+|.......... ....+.
T Consensus 81 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~ 148 (196)
T 3tkl_A 81 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYT---------TAKEFA 148 (196)
T ss_dssp -THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH---------HHHHHH
T ss_pred -hHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHH---------HHHHHH
Confidence 1223456789999999998533222 233445555544433 399999999998754211111 134455
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...+.+++. .|++++.|+.++++.+.+.+...
T Consensus 149 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~~~ 180 (196)
T 3tkl_A 149 DSLGIPFLE------TSAKNATNVEQSFMTMAAEIKKR 180 (196)
T ss_dssp HHTTCCEEE------ECTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 555655554 57778899999999998776654
No 31
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.73 E-value=7.5e-17 Score=138.62 Aligned_cols=162 Identities=17% Similarity=0.138 Sum_probs=102.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|.+++...... .....+.......+.. ++ ..+.++||||... +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 3458999999999999999999998765322 1222232333333333 44 4789999999543 22
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|.......... ....+.
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 142 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFL---------EASRFA 142 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH---------HHHHHH
Confidence 334556778999999999985332222 23444444443333 499999999997533111111 123344
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+..++. .|++++.|+.++++.+...+.
T Consensus 143 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 143 QENELMFLE------TSALTGENVEEAFVQCARKIL 172 (186)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHcCCEEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 444444443 577788999999999876554
No 32
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.73 E-value=1.7e-16 Score=144.74 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=106.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|.+|+|||||+|+|+|...... ..+++|.......+.. .+..+.||||||..+...... .+.+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~~~--~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~- 78 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQYVA--NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDY- 78 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHH-
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHH-
Confidence 47899999999999999999999876422 2345665555555554 678999999999987543221 11111111
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|+++ +.. ...++..+. ... .|+++|+||+|...... .......+...++.
T Consensus 79 ~~~~~~d~ii~V~D~t~-~~~-~~~~~~~l~---~~~--~pvilv~NK~Dl~~~~~----------i~~~~~~l~~~lg~ 141 (258)
T 3a1s_A 79 LLKGDADLVILVADSVN-PEQ-SLYLLLEIL---EME--KKVILAMTAIDEAKKTG----------MKIDRYELQKHLGI 141 (258)
T ss_dssp HHHSCCSEEEEEEETTS-CHH-HHHHHHHHH---TTT--CCEEEEEECHHHHHHTT----------CCBCHHHHHHHHCS
T ss_pred HhhcCCCEEEEEeCCCc-hhh-HHHHHHHHH---hcC--CCEEEEEECcCCCCccc----------hHHHHHHHHHHcCC
Confidence 11257899999999984 322 222333333 222 49999999999653210 11124455555565
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++++ .||+++.|+.+|++.+...+.
T Consensus 142 ~vi~------~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 142 PVVF------TSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred CEEE------EEeeCCcCHHHHHHHHHHHhh
Confidence 5554 677788999999999998776
No 33
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.73 E-value=2.4e-17 Score=139.56 Aligned_cols=162 Identities=15% Similarity=0.092 Sum_probs=99.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|++|+|||||+|++++...... ..|.......+.+ ++..+.++||||.... ....
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~-----------~~~~ 68 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGLTSI-----------RPYW 68 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCCC-----CCCSSEEEEEEEE-TTEEEEEEEECCCGGG-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCc-----CCcCccceEEEEE-CCEEEEEEECCCChhh-----------hHHH
Confidence 458999999999999999999987665321 1222333344455 6788999999997532 1223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+..+|++++|+|++++.+-.. ...++...+... ...|+++|+||+|.... ....+.... +. ...
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~ 137 (171)
T 1upt_A 69 RCYYSNTDAVIYVVDSCDRDRIGI--SKSELVAMLEEEELRKAILVVFANKQDMEQA--MTSSEMANS-----LG--LPA 137 (171)
T ss_dssp GGGCTTCSEEEEEEETTCCTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----HT--GGG
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhchhhCCCEEEEEEECCCCcCC--CCHHHHHHH-----hC--chh
Confidence 455678999999999986533222 122333322210 22499999999998755 222221111 00 011
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+....+. ....|++++.|+.++++.+.+.+..
T Consensus 138 ~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 138 LKDRKWQ---IFKTSATKGTGLDEAMEWLVETLKS 169 (171)
T ss_dssp CTTSCEE---EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred ccCCceE---EEECcCCCCcCHHHHHHHHHHHHhh
Confidence 1111111 1236788899999999999877654
No 34
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.73 E-value=7.7e-17 Score=141.27 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=103.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.|++....... ....+.......+.+ ++ ..+.||||||......
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT----------- 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence 3579999999999999999999987753221 122222233333333 33 3789999999765322
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++++.+-.. ..++..+....+.. .|+++|+||+|.........+ ....+..
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 141 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYD---------VAKEFAD 141 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHHH
Confidence 12345678899999999985433222 23444454443333 499999999998754211111 1233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+.+++. .||+++.|+.+|+..+...+..
T Consensus 142 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 171 (206)
T 2bcg_Y 142 ANKMPFLE------TSALDSTNVEDAFLTMARQIKE 171 (206)
T ss_dssp HTTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44544444 5777889999999998876654
No 35
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=1e-17 Score=144.96 Aligned_cols=164 Identities=13% Similarity=0.024 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++...+.... ..|.......+.+ ++..+.++||||..... ...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~-----------~~~ 84 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQNI---LPTIGFSIEKFKS-SSLSFTVFDMSGQGRYR-----------NLW 84 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSSC---CCCSSEEEEEEEC-SSCEEEEEEECCSTTTG-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCc---CCccceeEEEEEE-CCEEEEEEECCCCHHHH-----------HHH
Confidence 56899999999999999999999887433221 2233333444455 67899999999966531 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH-
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ- 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~- 174 (371)
...+..+|++++|+|++++.+-.. ...+..+...... ....|+++|+||+|.... ...++ +...+.
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~---------~~~~~~~ 153 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA--VTSVK---------VSQLLCL 153 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC--CCHHH---------HHHHHTG
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC--CCHHH---------HHHHhCh
Confidence 345667899999999985322111 1222333222110 023499999999998754 22222 112221
Q ss_pred -hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 -LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 -~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
......+. ....|++++.|+.+|++.+.+.+..
T Consensus 154 ~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 154 ENIKDKPWH---ICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp GGCCSSCEE---EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred hhccCCceE---EEEccCCCCcCHHHHHHHHHHHHHH
Confidence 11111111 1236788899999999999876643
No 36
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.72 E-value=5.2e-18 Score=143.29 Aligned_cols=162 Identities=17% Similarity=0.100 Sum_probs=97.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|++++........ +..+.........+ ++ ..+.++||||.... ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~-----------~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQERF-----------ASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCChhh-----------hhh
Confidence 3689999999999999999999876533222 12222222223333 33 37899999996432 111
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+... ..++..+....+.. .|+++|+||+|...... ... ........+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~--~~~----v~~~~~~~~~~~ 140 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQEGG--ERK----VAREEGEKLAEE 140 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSC--CCC----SCHHHHHHHHHH
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccc--ccC----CCHHHHHHHHHH
Confidence 2334567799999999985432222 23344454444333 49999999999864310 000 000112334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+..++. .||+++.|+.+|++.+.+.+
T Consensus 141 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 167 (170)
T 1ek0_A 141 KGLLFFE------TSAKTGENVNDVFLGIGEKI 167 (170)
T ss_dssp HTCEEEE------CCTTTCTTHHHHHHHHHTTS
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHH
Confidence 4544444 57778899999999887544
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.72 E-value=3.9e-17 Score=141.79 Aligned_cols=163 Identities=17% Similarity=0.179 Sum_probs=96.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|.+|+|||||+|.|++....... ....+.......+.+ ++ ..+.++||||.... .
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~ 89 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEAC--KSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQERF-----------N 89 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------H
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcCC--CCccceeEEEEEEEE-CCeEEEEEEEeCCCcHHH-----------H
Confidence 34578999999999999999999987653221 122233333333444 33 37899999995431 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++|+|+|++++.+..+ ..++..+....... .|+++|+||+|.........+ ....+.
T Consensus 90 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~---------~~~~~~ 158 (192)
T 2il1_A 90 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQ---------QGEKFA 158 (192)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHH---------HHHHHH
Confidence 112223345699999999985433332 23344555543333 499999999997643111111 123333
Q ss_pred Hhc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
... +..++ ..||+++.|+.+|++.+.+.+..
T Consensus 159 ~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 159 QQITGMRFC------EASAKDNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp HTSTTCEEE------ECBTTTTBSHHHHHHHHHHHHHH
T ss_pred HhcCCCeEE------EEeCCCCCCHHHHHHHHHHHHHH
Confidence 332 22333 35788899999999998876543
No 38
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.72 E-value=6.3e-17 Score=141.40 Aligned_cols=162 Identities=14% Similarity=0.089 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.+++........... +.......+... ....+.+|||||... +....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--ceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 4799999999999999999999887533222222 222222223331 234789999999753 12233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+...+
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 143 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSE---------RGRQLADHL 143 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHH---------HHHHHHHHH
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHH---------HHHHHHHHC
Confidence 445667899999999985422121 23444444433223 499999999998654211111 133444444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++. .||+++.|+.++++.+...+..
T Consensus 144 ~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 144 GFEFFE------ASAKDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TCEEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred CCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 544443 5777889999999988766543
No 39
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.72 E-value=5.6e-17 Score=142.00 Aligned_cols=162 Identities=17% Similarity=0.135 Sum_probs=99.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|.+++....... ...++.......+.+ ++ ..+.|+||||... +...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------FRTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHH
Confidence 478999999999999999999977642211 111112222233333 44 4789999999643 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...++..+|++|+|+|++++.+-.. ..++..+....+.. .|+++|+||+|.........+ .+..+...
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~---------~~~~~~~~ 163 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLA---------EAQSLAEH 163 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHH---------HHHHHHHH
Confidence 3345667899999999984322211 23444555443333 499999999997643111111 13344554
Q ss_pred cCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+. .++. .||+++.|+.++++.|...+...
T Consensus 164 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 164 YDILCAIE------TSAKDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCEEEE------EeCCCCCCHHHHHHHHHHHHHHh
Confidence 454 3333 67788899999999998766554
No 40
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=9.8e-17 Score=140.67 Aligned_cols=160 Identities=17% Similarity=0.154 Sum_probs=100.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|.+++...... ....++.......+.+ ++ ..+.++||||... +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 47999999999999999999997765322 1122222333333334 44 3789999999532 2333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+...
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~---------~~~~~~~~ 160 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQ---------RAEEFSEA 160 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHH---------HHHHHHHH
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHHHH
Confidence 4566788999999999984332221 33445555443333 499999999997633111111 12333344
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++. .||+++.|+.+|+..+...+.
T Consensus 161 ~~~~~~~------~Sa~~g~gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 161 QDMYYLE------TSAKESDNVEKLFLDLACRLI 188 (201)
T ss_dssp HTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred cCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 4444444 577888999999999876554
No 41
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=4.6e-17 Score=139.69 Aligned_cols=163 Identities=18% Similarity=0.115 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+|+|++|+|||||+|.|++....... .+++.......+.. ++ ..+.|+||||.... .
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----~------- 80 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----A------- 80 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----H-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcC---CCccceEEEEEEEE-CCEEEEEEEEECCCCccc----H-------
Confidence 35689999999999999999999987642221 11111122222333 33 37889999997652 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+-. ...++..+...... ...|+++|+||+|.......... .+..+.
T Consensus 81 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 150 (187)
T 2a9k_A 81 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRA 150 (187)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGGCCSCHH---------HHHHHH
T ss_pred HHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHH---------HHHHHH
Confidence 11122234569999999998432211 13344445444431 12499999999997643111111 133445
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+.+++. .|++++.|+.+|+..+.+.+..
T Consensus 151 ~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 151 EQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 181 (187)
T ss_dssp HHTTCEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHcCCeEEE------eCCCCCCCHHHHHHHHHHHHHH
Confidence 555544444 5777889999999998876643
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.72 E-value=2.1e-17 Score=140.78 Aligned_cols=160 Identities=17% Similarity=0.107 Sum_probs=98.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|.+++...... .....+.........+ ++ ..+.++||||..... ..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~-----------~~ 79 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERFR-----------SL 79 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGGG-----------GG
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHHH-----------HH
Confidence 47999999999999999999997665322 1222333333333333 44 378999999964321 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-. ...++..+....+.. .|+++|+||+|........... ...+...
T Consensus 80 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~~ 148 (179)
T 2y8e_A 80 IPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEE---------GERKAKE 148 (179)
T ss_dssp SHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHH---------HHHHHHH
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHH---------HHHHHHH
Confidence 122344679999999998432222 233444454444433 3999999999976431111111 2233344
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..++. .|++++.++.++++.+...+.
T Consensus 149 ~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 176 (179)
T 2y8e_A 149 LNVMFIE------TSAKAGYNVKQLFRRVAAALP 176 (179)
T ss_dssp HTCEEEE------EBTTTTBSHHHHHHHHHHTCC
T ss_pred cCCeEEE------EeCCCCCCHHHHHHHHHHHHh
Confidence 4444444 567788999999999876554
No 43
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.72 E-value=1.4e-16 Score=137.44 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=100.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE-EEeEEeeC----------CcEEEEEeCCCCCCCCcc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE-MKTTVLKD----------GQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~-~~~~~~~~----------~~~i~liDTPG~~~~~~~ 85 (371)
....+|+|+|++|+|||||+|++++......... ..+.... ........ ...+.++||||...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 82 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFIT--TVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLER---- 82 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCC--CCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCccc--ccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHH----
Confidence 3458999999999999999999998665322111 1111111 12222211 24799999999743
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE 164 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~ 164 (371)
+.......+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|.........+
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~------ 148 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAY-SENPDIVLCGNKSDLEDQRAVKEE------ 148 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSS-SSSCCEEEEEECTTCGGGCCSCHH------
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccccccCHH------
Confidence 22234455678899999999985433322 334444444332 122499999999997643111111
Q ss_pred CCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 165 CPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 165 ~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..+....+.+++. .|++++.|+.+|++.|...+.
T Consensus 149 ---~~~~~~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~ 184 (195)
T 3bc1_A 149 ---EARELAEKYGIPYFE------TSAANGTNISHAIEMLLDLIM 184 (195)
T ss_dssp ---HHHHHHHHHTCCEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCCEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 133444444544544 567788999999999887654
No 44
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.72 E-value=8.3e-18 Score=146.85 Aligned_cols=167 Identities=16% Similarity=0.073 Sum_probs=95.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|++++...........+.+ .....+.+ ++ ..+.|+||||.... ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVD--FQMKTLIV-DGERTVLQLWDTAGQERF-----------RS 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC------------CEEEEEEE-TTEEEEEEEEECTTCTTC-----------HH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccce--eEEEEEEE-CCEEEEEEEEECCCCcch-----------hh
Confidence 46899999999999999999999876432211111222 22222333 33 46899999997642 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++++.+... ..++..+....... .|+++|+||+|.... ...+ ............+..
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~--~~~~-~~~~v~~~~~~~~~~ 167 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDT--AATE-GQKCVPGHFGEKLAM 167 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHH--HHHT-TCCCCCHHHHHHHHH
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccc--cccc-cccccCHHHHHHHHH
Confidence 12223345699999999985433222 33444555443333 399999999997521 0000 000000112234444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.+++..+.+.+.
T Consensus 168 ~~~~~~~~------~SA~~g~gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 168 TYGALFCE------TSAKDGSNIVEAVLHLAREVK 196 (199)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHT
T ss_pred HcCCeEEE------eeCCCCCCHHHHHHHHHHHHH
Confidence 44544444 577788999999999887664
No 45
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.1e-16 Score=136.63 Aligned_cols=163 Identities=16% Similarity=0.142 Sum_probs=100.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...++.......... ++ ..+.++||||... +..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTF-ISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCC-CCCCSCEEEEEEEEE-TTEEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCc-CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 45899999999999999999999877532211 122222222222233 43 3789999999543 122
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+. ...+..
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~---------~~~~~~ 144 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKRED---------GEKLAK 144 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHH---------HHHHHH
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHH---------HHHHHH
Confidence 23445667899999999985433222 33445555544333 4999999999987542111111 233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++. .||+++.|+.++++.+...+..
T Consensus 145 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (180)
T 2g6b_A 145 EYGLPFME------TSAKTGLNVDLAFTAIAKELKR 174 (180)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHC
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 44544444 5777889999999999877654
No 46
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=1.1e-16 Score=139.22 Aligned_cols=159 Identities=15% Similarity=0.168 Sum_probs=98.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC-----------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG----------------------------- 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------------------- 68 (371)
+..+|+|+|++|+|||||+|+|++........ +.+........+.+ ++
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQ 82 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC-----------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCccccccccccccccccccccccccccccc
Confidence 45899999999999999999999887532211 11111122222222 22
Q ss_pred ----------cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCC
Q 040649 69 ----------QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIF 137 (371)
Q Consensus 69 ----------~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~ 137 (371)
..+.||||||...... .....+..+|++|+|+|++++.+..+ ..++..+....+
T Consensus 83 ~~~~~~~~~~~~~~i~Dt~G~~~~~~-----------~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~---- 147 (208)
T 3clv_A 83 HNNYNENLCNIKFDIWDTAGQERYAS-----------IVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN---- 147 (208)
T ss_dssp --CCCTTTCEEEEEEEECTTGGGCTT-----------THHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----
T ss_pred cccccCccceeEEEEEECCCcHHHHH-----------HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----
Confidence 5789999999544211 12234567799999999985433222 234444444333
Q ss_pred CeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 138 DYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.|+++|+||+| ........+ .+..++...+.+++. .||+++.|+.+|++.+...+..
T Consensus 148 ~piilv~NK~D-~~~~~~~~~---------~~~~~~~~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 148 YIIILVANKID-KNKFQVDIL---------EVQKYAQDNNLLFIQ------TSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp CEEEEEEECTT-CC-CCSCHH---------HHHHHHHHTTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCC-cccccCCHH---------HHHHHHHHcCCcEEE------EecCCCCCHHHHHHHHHHHHHH
Confidence 49999999999 432112222 134455555555554 5777889999999998876543
No 47
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=4.5e-17 Score=142.40 Aligned_cols=168 Identities=21% Similarity=0.174 Sum_probs=98.9
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
+.....+|+|+|.+|+|||||+|+|++........ +...... ...... .....+.||||||.......
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------- 88 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYD--PTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSIL-------- 88 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCC--CCSEEEE-EEEEC----CEEEEEEEECCCCTTCCC--------
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCC--CccceEE-EEEEEECCEEEEEEEEECCCccchHHH--------
Confidence 33456899999999999999999999877532211 1111111 111222 13457899999997653221
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
....+..+|++++|+|++++.+-.. ..++..+....+ ....|+++|+||+|.......... ....+
T Consensus 89 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~---------~~~~~ 155 (201)
T 3oes_A 89 ---PYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHG-KTRVPVVLVGNKADLSPEREVQAV---------EGKKL 155 (201)
T ss_dssp ---CGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGGCCSCHH---------HHHHH
T ss_pred ---HHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccCccccccCHH---------HHHHH
Confidence 3345678899999999984322111 222222322211 112499999999997643111111 12334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
....+..++. .||+++.|+.++++.+...+....
T Consensus 156 ~~~~~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~~~ 189 (201)
T 3oes_A 156 AESWGATFME------SSARENQLTQGIFTKVIQEIARVE 189 (201)
T ss_dssp HHHHTCEEEE------CCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHhhh
Confidence 4444554444 577888999999999988776543
No 48
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=2.7e-17 Score=142.54 Aligned_cols=177 Identities=14% Similarity=0.079 Sum_probs=100.2
Q ss_pred CCCCCCCCCCCCCCCCC---CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEe
Q 040649 1 MGERVINGDWKPTSSSN---GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVID 75 (371)
Q Consensus 1 mg~~~~~~~~~~~~~~~---~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liD 75 (371)
||+|-+ .+|..++... ...+|+|+|++|+|||||+|.+++........ ...+.......+.. ++ ..+.|+|
T Consensus 1 ~~~~~~-~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~D 76 (191)
T 2a5j_A 1 MGSSHH-HHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWD 76 (191)
T ss_dssp ----------CCCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEEC
T ss_pred CCcccc-ccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEE
Confidence 555443 3343333332 35689999999999999999999876532211 12222222223333 33 4789999
Q ss_pred CCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch
Q 040649 76 TPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE 154 (371)
Q Consensus 76 TPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~ 154 (371)
|||....... ....+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|......
T Consensus 77 t~G~~~~~~~-----------~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~ 143 (191)
T 2a5j_A 77 TAGQESFRSI-----------TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRD 143 (191)
T ss_dssp CTTGGGTSCC-----------CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCC
T ss_pred CCCchhhhhh-----------HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccc
Confidence 9996543211 2234557899999999984332222 23444454443333 49999999999764311
Q ss_pred hhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 155 KTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 155 ~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+ ....+....+..++. .|++++.|+.++++.+.+.+.
T Consensus 144 v~~~---------~~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 183 (191)
T 2a5j_A 144 VKRE---------EGEAFAREHGLIFME------TSAKTACNVEEAFINTAKEIY 183 (191)
T ss_dssp SCHH---------HHHHHHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred cCHH---------HHHHHHHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 1111 123344444544444 567788999999999876554
No 49
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.71 E-value=5.2e-17 Score=139.87 Aligned_cols=162 Identities=14% Similarity=0.081 Sum_probs=101.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+|+|++|+|||||+|++++.. ... . ..|.......+.+ ++..+.++||||... +...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~-~---~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT-I---SPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS-C---CCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc-c---cccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 456899999999999999999999877 222 1 1122233344445 678899999999632 2333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ...++...... ....|+++|+||+|.... ...++... .+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~---------~~~ 145 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQD--CQRELQSLLVEERLAGATLLIFANKQDLPGA--LSCNAIQE---------ALE 145 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHH---------HTT
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhcCCCcEEEEEeCccCCCC--CCHHHHHH---------HhC
Confidence 4556788999999999985433222 22233332221 112499999999998754 22222111 111
Q ss_pred --hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 --LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 --~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
......+. ....|++++.|+.++++.+.+.+.+.
T Consensus 146 ~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 146 LDSIRSHHWR---IQGCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred hhhccCCceE---EEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 01111111 12367888999999999999887764
No 50
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.71 E-value=3.9e-17 Score=137.97 Aligned_cols=160 Identities=14% Similarity=0.148 Sum_probs=99.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|++++....... .+..+.......+.+ ++ ..+.++||||.......
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~~~~----------- 68 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQIWDTAGQERFRTI----------- 68 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEES-SSCEEEEEEECCTTGGGTSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEeCCCChhhhhh-----------
Confidence 478999999999999999999987653221 122222233333333 33 36889999996543211
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+-.. ..++..+....+.. .|+++|+||+|..... ...+ ....+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~-~~~~---------~~~~~~~~ 136 (170)
T 1g16_A 69 TTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETRV-VTAD---------QGEALAKE 136 (170)
T ss_dssp CHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTCC-SCHH---------HHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCcCc-cCHH---------HHHHHHHH
Confidence 2233567899999999985432222 34455555544333 4999999999974321 1111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++. .|++++.|+.+++..+...+..
T Consensus 137 ~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~ 165 (170)
T 1g16_A 137 LGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 165 (170)
T ss_dssp HTCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 4544444 5777889999999999877664
No 51
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=6e-17 Score=142.41 Aligned_cols=163 Identities=14% Similarity=0.148 Sum_probs=100.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.....+|+|+|++|+|||||+|+|++....... ...++.......+.+ ++ ..+.||||||......
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~--------- 84 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFRT--------- 84 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHHCCCCCSS--SCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGTC---------
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCccc--CCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHHH---------
Confidence 345689999999999999999999987653221 122233333333444 44 4789999999654211
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+..+|++|+|+|++.+.+-.. ..++..+....+.. .|+++|+||+|..... ...+ ....+
T Consensus 85 --~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~-~~~~---------~~~~~ 150 (213)
T 3cph_A 85 --ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMETRV-VTAD---------QGEAL 150 (213)
T ss_dssp --CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSSCC-SCHH---------HHHHH
T ss_pred --HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcccc-cCHH---------HHHHH
Confidence 12234567899999999984332221 34455555544433 3999999999974221 1111 12334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
....+.+++. .|++++.|+.+|+..+...+..
T Consensus 151 ~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 151 AKELGIPFIE------SSAKNDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp HHHHTCCEEE------CBTTTTBSSHHHHHHHHHHHHH
T ss_pred HHHcCCEEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 4444444444 5677889999999998876553
No 52
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.71 E-value=4.4e-17 Score=139.81 Aligned_cols=161 Identities=14% Similarity=0.101 Sum_probs=79.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... ..+.++.......+.+ ++ ..+.++||||... +..
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 72 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRT 72 (183)
T ss_dssp EEEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhh
Confidence 457999999999999999999997654211 1112222232333334 44 5789999999643 222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....... .|+++|+||+|.........+ ....+..
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~---------~~~~~~~ 141 (183)
T 2fu5_C 73 ITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKE---------RGEKLAL 141 (183)
T ss_dssp -CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHH---------HHHHHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHH---------HHHHHHH
Confidence 33455678999999999985432221 23444444443333 499999999998654211111 1333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .||+++.|+.+++..+...+.
T Consensus 142 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 142 DYGIKFME------TSAKANINVENAFFTLARDIK 170 (183)
T ss_dssp HHTCEEEE------CCC---CCHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44544443 577788999999999876654
No 53
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.71 E-value=9.1e-17 Score=140.17 Aligned_cols=185 Identities=18% Similarity=0.113 Sum_probs=98.1
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCC
Q 040649 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPG 78 (371)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG 78 (371)
||.+.....-..........+|+|+|.+|+|||||+|.+++.... ... .+++.......+.. ++. .+.++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~~--~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G 77 (201)
T 2q3h_A 2 MGPGEPGGRGRAGGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TEY--IPTAFDNFSAVVSV-DGRPVRLQLCDTAG 77 (201)
T ss_dssp ------------------CEEEEEECSTTSSHHHHHHHHHC-----------CCSSEEEEEEEEE-TTEEEEEEEEECCC
T ss_pred CCCCCCCcccccCCCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CCC--CCcccceeEEEEEE-CCEEEEEEEEECCC
Confidence 444444433334445556789999999999999999999987632 211 11111111222333 443 577999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhh
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKT 156 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~ 156 (371)
....... ....+.++|++++|+|++++.+-... .++..+....+ . .|+++|+||+|..... ..
T Consensus 78 ~~~~~~~-----------~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~-~~ 142 (201)
T 2q3h_A 78 QDEFDKL-----------RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP-K--APIILVGTQSDLREDV-KV 142 (201)
T ss_dssp STTCSSS-----------GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--SCEEEEEECGGGGGCH-HH
T ss_pred CHHHHHH-----------hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECHhhhhch-hh
Confidence 8654221 23456788999999999854333332 34555555443 2 4999999999987541 11
Q ss_pred HHHHhc---c-cCCchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 157 LEDYLG---L-ECPKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 157 l~~~l~---~-~~~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+.. . ........+....+. .++. .||+++.|+.+|++.+...+..
T Consensus 143 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 195 (201)
T 2q3h_A 143 LIELDKCKEKPVPEEAAKLLAEEIKAASYIE------CSALTQKNLKEVFDAAIVAGIQ 195 (201)
T ss_dssp HHHHHTTTCCCCCHHHHHHHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred hhhhcccccccCCHHHHHHHHHhcCCcEEEE------EecCCCCCHHHHHHHHHHHHhc
Confidence 111110 0 001123334444443 3333 5788889999999998766543
No 54
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.71 E-value=1.3e-16 Score=134.99 Aligned_cols=160 Identities=14% Similarity=0.211 Sum_probs=96.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+++|++|+|||||+|.|+|...+... .++.|.......+.+ ++..+.++||||........ ..+.+.....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~- 77 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI- 77 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccC--CCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH-
Confidence 68999999999999999999997653321 223333333333444 67789999999987653221 1111111111
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
...++|++++|+|+++ + .....++..+.. .. .|+++|+||+|.... .. + ......+...++.+
T Consensus 78 ~~~~~~~~i~v~D~~~-~-~~~~~~~~~~~~---~~--~p~ilv~nK~Dl~~~--~~----~----~~~~~~~~~~~~~~ 140 (165)
T 2wji_A 78 INEKPDLVVNIVDATA-L-ERNLYLTLQLME---MG--ANLLLALNKMDLAKS--LG----I----EIDVDKLEKILGVK 140 (165)
T ss_dssp HHHCCSEEEEEEETTC-H-HHHHHHHHHHHH---TT--CCEEEEEECHHHHHH--TT----C----CCCHHHHHHHHTSC
T ss_pred hcCCCCEEEEEecCCc-h-hHhHHHHHHHHh---cC--CCEEEEEEchHhccc--cC----h----hhHHHHHHHHhCCC
Confidence 1136799999999973 2 122223333333 12 499999999996422 00 0 01133444444544
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
++. .||+++.|+++|++.+...+
T Consensus 141 ~~~------~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 141 VVP------LSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EEE------CBGGGTBSHHHHHHHHHHHT
T ss_pred EEE------EEcCCCCCHHHHHHHHHHHh
Confidence 443 68889999999999987654
No 55
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.71 E-value=3.1e-16 Score=133.49 Aligned_cols=163 Identities=18% Similarity=0.077 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...+.......+.+ ++ ..+.++||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLF--HTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 45799999999999999999999776532211 12222222233333 44 3789999999543 223
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|..... ...++ +..+
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-~~~~~---------~~~~ 141 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ-VSTEE---------AQAW 141 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCS-SCHHH---------HHHH
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccccc-cCHHH---------HHHH
Confidence 34556778899999999985432222 3344455444331 1224999999999976321 11211 2333
Q ss_pred HH-hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 173 LQ-LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~-~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ..+..++. .|++++.|+.++++.+...+..
T Consensus 142 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 142 CRDNGDYPYFE------TSAKDATNVAAAFEEAVRRVLA 174 (177)
T ss_dssp HHHTTCCCEEE------CCTTTCTTHHHHHHHHHHHHHT
T ss_pred HHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHh
Confidence 33 22333443 5777889999999998876654
No 56
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.71 E-value=1.7e-16 Score=133.27 Aligned_cols=161 Identities=17% Similarity=0.127 Sum_probs=96.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|++++........ + .+.......... ++. .+.++||||.... . ..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~-~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~----~-------~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD--P-TIEDFYRKEIEV-DSSPSVLEILDTAGTEQF----A-------SM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--T-TCCEEEEEEEEE-TTEEEEEEEEECCCTTCC----H-------HH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCC--C-CcceeEEEEEEE-CCEEEEEEEEECCCchhh----H-------HH
Confidence 4789999999999999999999766532211 1 111111222333 333 5889999996642 1 11
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|.......... ....+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 137 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESEREVSSS---------EGRALAEE 137 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCcccccccCCHH---------HHHHHHHH
Confidence 1222345699999999984322221 2333344443321 23499999999997643111111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+.+++. .|++++.|+.+|++.+...+..
T Consensus 138 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 166 (167)
T 1kao_A 138 WGCPFME------TSAKSKTMVDELFAEIVRQMNY 166 (167)
T ss_dssp HTSCEEE------ECTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCCEEE------ecCCCCcCHHHHHHHHHHHHhh
Confidence 4545554 5777889999999999876653
No 57
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.71 E-value=1e-16 Score=140.24 Aligned_cols=168 Identities=15% Similarity=0.150 Sum_probs=101.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
......+|+|+|.+|+|||||+|.+++........ +.++.... ..+.+ ++ ..+.++||||....
T Consensus 21 m~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~-~~~~~-~~~~~~l~i~Dt~G~~~~---------- 86 (201)
T 2gco_A 21 MAAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYV--PTVFENYI-ADIEV-DGKQVELALWDTAGQEDY---------- 86 (201)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCC--CSSCCCCE-EEEEE-TTEEEEEEEECCCCSGGG----------
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHhCcCCcccC--CcccceEE-EEEEE-CCEEEEEEEEECCCchhH----------
Confidence 33345799999999999999999999876532211 11111111 12233 33 37889999996432
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc-----C
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE-----C 165 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~-----~ 165 (371)
.......+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|.... ....+.+... .
T Consensus 87 -~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~ 160 (201)
T 2gco_A 87 -DRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCP-N--VPIILVGNKKDLRQD--EHTRRELAKMKQEPVR 160 (201)
T ss_dssp -TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGTTC--HHHHHHHHTTTCCCCC
T ss_pred -HHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEecHHhhcC--ccchhhhcccccCcCC
Confidence 1223345678899999999984322222 334555555432 2 499999999998765 2222222110 0
Q ss_pred CchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 166 PKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 166 ~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
......+....+. .++. .||+++.|+.+|++.+.+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~------~SA~~g~gi~~l~~~i~~~~ 198 (201)
T 2gco_A 161 SEEGRDMANRISAFGYLE------CSAKTKEGVREVFEMATRAG 198 (201)
T ss_dssp HHHHHHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 1123344444443 3333 67888999999999987654
No 58
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=8.1e-17 Score=136.11 Aligned_cols=163 Identities=18% Similarity=0.157 Sum_probs=96.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.+++...........+.+. . ..... .....+.++||||..+.. ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~--~-~~~~~~~~~~~~~~~Dt~G~~~~~-----------~~~ 68 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY--R-QVISCDKSICTLQITDTTGSHQFP-----------AMQ 68 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE--E-EEEEETTEEEEEEEEECCSCSSCH-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE--E-EEEEECCEEEEEEEEECCCchhhH-----------HHH
Confidence 47899999999999999999998765322221111111 1 11122 122368999999976531 111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++.+... ..++..+....+.....|+++|+||+|.......... ....+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~---------~~~~~~~~~ 139 (172)
T 2erx_A 69 RLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS---------EAEALARTW 139 (172)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH---------HHHHHHHHH
T ss_pred HHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH---------HHHHHHHHh
Confidence 122334699999999984432222 3344555554432223499999999997643111111 122333334
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .|++++.|+.+|++.+.+.+..
T Consensus 140 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 167 (172)
T 2erx_A 140 KCAFME------TSAKLNHNVKELFQELLNLEKR 167 (172)
T ss_dssp TCEEEE------CBTTTTBSHHHHHHHHHHTCCS
T ss_pred CCeEEE------ecCCCCcCHHHHHHHHHHHHhh
Confidence 444443 5777889999999998876543
No 59
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=1.9e-16 Score=133.46 Aligned_cols=161 Identities=20% Similarity=0.091 Sum_probs=86.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+|+|++|+|||||+|.++|....... ...+.+. . ..... .....+.++||||.... ....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~i~D~~g~~~~-----------~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-D--RSIVVDGEEASLMVYDIWEQDGG-----------RWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-E--EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-E--EEEEECCEEEEEEEEECCCCccc-----------hhhh
Confidence 478999999999999999999987653221 1122222 1 11222 12346889999996542 1222
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++-+-.. ..++..+..... ....|+++|+||+|.........+ ....+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 136 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSREVSVD---------EGRACAVVF 136 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSCCSCHH---------HHHHHHHHT
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccccccccccCHH---------HHHHHHHHh
Confidence 334567899999999984422221 223333333211 122499999999998754211211 123344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.+++. .||+++.|+.++++.+.+.+..
T Consensus 137 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 137 DCKFIE------TSAALHHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TCEEEE------CBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCcEEE------eccCCCCCHHHHHHHHHHHHHh
Confidence 444443 6788899999999999876653
No 60
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=2.6e-17 Score=142.69 Aligned_cols=163 Identities=14% Similarity=0.065 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...+|+|+|.+|+|||||+|.+++...........+.+. ....... ..+..+.|+||||.. .+...
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~-----------~~~~~ 88 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDF--KVKTVYRHEKRVKLQIWDTAGQE-----------RYRTI 88 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTE--EEEEEEETTTTEEEEEECHHHHH-----------HCHHH
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEE--EEEEEEECCEEEEEEEEeCCChH-----------HHHHH
Confidence 457999999999999999999998664322111112222 2222222 144579999999932 12333
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++++|+|++++-+-. ...++..+....... .|+++|+||+|.......... ....+...
T Consensus 89 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~ 157 (191)
T 3dz8_A 89 TTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTE---------KGQLLAEQ 157 (191)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred HHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHHHH
Confidence 444567889999999998432222 133455555543333 499999999997533111111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++. .|++++.|+.++++.+.+.+..
T Consensus 158 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~ 186 (191)
T 3dz8_A 158 LGFDFFE------ASAKENISVRQAFERLVDAICD 186 (191)
T ss_dssp HTCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred cCCeEEE------EECCCCCCHHHHHHHHHHHHHH
Confidence 4544443 5778889999999998876654
No 61
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.70 E-value=9e-17 Score=140.51 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=94.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||+|.+++........ ...+.......+.. ++ ..+.|+||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSN--HTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccCC--CcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 35799999999999999999999876532211 22222222223333 34 4789999999421 111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++++.+-.. ..++..+....... .|+++|+||+|..........+ ...+..
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~---------~~~~~~ 158 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLE---------ASRFAQ 158 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHH---------HHHHHH
Confidence 22334567899999999985332222 23344444443333 4999999999975331111111 233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.+++..+...+.
T Consensus 159 ~~~~~~~~------~SA~~g~gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 159 ENELMFLE------TSALTGENVEEAFLKCARTIL 187 (200)
T ss_dssp HTTCEEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHH
Confidence 44444443 577788999999999876554
No 62
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.70 E-value=9.8e-17 Score=137.04 Aligned_cols=166 Identities=16% Similarity=0.126 Sum_probs=94.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--CCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--DGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.....+|+|+|++|+|||||+|.+++........ +..+.......+.+. ....+.++||||... +
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~ 71 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYK--ATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------F 71 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC----------------
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccC--CccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------h
Confidence 3456899999999999999999999876532211 112222222233331 234789999999543 2
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCch-hhHHHHhcccCCchH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNE-KTLEDYLGLECPKPL 169 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~-~~l~~~l~~~~~~~l 169 (371)
.......+..+|++++|+|++++.+-.. ..++..+....+. ....|+++|+||+|...... .... ..
T Consensus 72 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~---------~~ 142 (182)
T 1ky3_A 72 QSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK---------SA 142 (182)
T ss_dssp -----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHH---------HH
T ss_pred hhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHH---------HH
Confidence 2233455678899999999985432222 2334444444321 12249999999999753310 0111 12
Q ss_pred HHHHH-hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 170 KEILQ-LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~-~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.. ..+..++. .|++++.|++++++.+...+.
T Consensus 143 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 177 (182)
T 1ky3_A 143 QELAKSLGDIPLFL------TSAKNAINVDTAFEEIARSAL 177 (182)
T ss_dssp HHHHHHTTSCCEEE------EBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 33333 22333443 577788999999999886554
No 63
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=5.2e-17 Score=140.61 Aligned_cols=165 Identities=16% Similarity=0.093 Sum_probs=99.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
+..+|+|+|++|+|||||+|.|++........ ...+.......+.+. ....+.|+||||.......
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~----------- 80 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDTFDPELA--ATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTL----------- 80 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCS-----------
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCccCC--CccceEEEEEEEEECCeEEEEEEEeCCCchhhhhh-----------
Confidence 45799999999999999999999876532211 222222222233331 2347899999996542211
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..+|++|+|+|++++.+... ..++..+..... ....|+++|+||+|..... .... ....+...
T Consensus 81 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~~-~~~~---------~~~~~~~~ 149 (195)
T 1x3s_A 81 TPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENRE-VDRN---------EGLKFARK 149 (195)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSCC-SCHH---------HHHHHHHH
T ss_pred hHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCcccc-cCHH---------HHHHHHHH
Confidence 2233567899999999984422221 122223322211 1235999999999975321 1111 12334444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+..++. .|++++.|+.+|++.+...+....
T Consensus 150 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 150 HSMLFIE------ASAKTCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TTCEEEE------CCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred cCCEEEE------ecCCCCCCHHHHHHHHHHHHHhhh
Confidence 4444443 577788999999999998776543
No 64
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.70 E-value=2.6e-17 Score=142.32 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=97.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++....... ..|.......+.. .+..+.||||||... +....
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 84 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM----IPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMW 84 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----CCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc----CCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHH
Confidence 4579999999999999999999977653221 1222233333444 677899999999532 22223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+..+|++|+|+|++++-+-. ....++...... ....|+++|+||+|.... ....++... +. ...
T Consensus 85 ~~~~~~~d~ii~v~D~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~-----~~--~~~ 153 (188)
T 1zd9_A 85 ERYCRGVSAIVYMVDAADQEKIE--ASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEK-----MN--LSA 153 (188)
T ss_dssp HHHHTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHH-----TT--GGG
T ss_pred HHHHccCCEEEEEEECCCHHHHH--HHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHH-----hC--hhh
Confidence 34456789999999998542222 222333333221 122499999999998754 222221111 00 000
Q ss_pred cC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ..+.. ...||+++.|+.+|++.+...+..
T Consensus 154 ~~~~~~~~----~~~SA~~g~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 154 IQDREICC----YSISCKEKDNIDITLQWLIQHSKS 185 (188)
T ss_dssp CCSSCEEE----EECCTTTCTTHHHHHHHHHHTCC-
T ss_pred hccCCeeE----EEEECCCCCCHHHHHHHHHHHHHh
Confidence 11 11111 236888899999999998876543
No 65
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.70 E-value=9e-17 Score=138.24 Aligned_cols=161 Identities=18% Similarity=0.163 Sum_probs=96.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|++|+|||||+|+|++....... .+++.......... ++. .+.++||||.......
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 68 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM---------- 68 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT----------
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH----------
Confidence 3479999999999999999999987653221 12222222222333 444 4778999996653221
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|..... ...+ ....+..
T Consensus 69 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~-~~~~---------~~~~~~~ 136 (189)
T 4dsu_A 69 -RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDLPSRT-VDTK---------QAQDLAR 136 (189)
T ss_dssp -HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTSSSCS-SCHH---------HHHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEECccCcccc-cCHH---------HHHHHHH
Confidence 1122334699999999984322222 233444444332 1234999999999987431 1111 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.++.+++. .||+++.|+.+|++.+...+..
T Consensus 137 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 166 (189)
T 4dsu_A 137 SYGIPFIE------TSAKTRQGVDDAFYTLVREIRK 166 (189)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 45555554 5777889999999998877654
No 66
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=3.6e-16 Score=154.17 Aligned_cols=165 Identities=15% Similarity=0.159 Sum_probs=90.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+.+|+|+|++|+|||||+|+|+|...... ....++|.......+.+ ++..+.||||||+.++.. ...........
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-s~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~~---~ve~~gi~~~~ 307 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQERAIV-SHMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAGE---EIEHEGIRRSR 307 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCccc-CCCCCceEEEEEEEEEE-CCeEEEEEECCCCCcchh---HHHHHHHHHHH
Confidence 46899999999999999999999864211 11234454444445555 788999999999876321 11111123334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
..+..+|++|+|+|++++.+.........+...+. ..|+++|+||+|.... ..... ..+......
T Consensus 308 ~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~---~~piIvV~NK~Dl~~~--~~~~~----------~~l~~~~~~ 372 (476)
T 3gee_A 308 MKMAEADLILYLLDLGTERLDDELTEIRELKAAHP---AAKFLTVANKLDRAAN--ADALI----------RAIADGTGT 372 (476)
T ss_dssp CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT---TSEEEEEEECTTSCTT--THHHH----------HHHHHHHTS
T ss_pred hhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC---CCCEEEEEECcCCCCc--cchhH----------HHHHhcCCC
Confidence 56778999999999997776632212222222233 2499999999998765 22211 111111012
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.++ ..||+++.|+++|++.+...+.
T Consensus 373 ~~i------~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 373 EVI------GISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp CEE------ECBTTTTBSHHHHHHHHTHHHH
T ss_pred ceE------EEEECCCCCHHHHHHHHHHHHh
Confidence 233 3688899999999999998887
No 67
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=8.5e-17 Score=139.66 Aligned_cols=162 Identities=13% Similarity=0.091 Sum_probs=102.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE-eEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK-TTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+|+|.+|+|||||+|.+++........ .|....+. .... ++. .+.++||||.... .
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~----~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~ 85 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYV----PTVFENFSHVMKY-KNEEFILHLWDTAGQEEY-----------D 85 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------T
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccC----CeeeeeeEEEEEE-CCEEEEEEEEECCCcHHH-----------H
Confidence 45799999999999999999999877522211 12212221 2222 443 5699999995432 2
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....++.++|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|...+..... .......+
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~~~~~-------~~~~~~~~ 155 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYID-T--AKTVLVGLKVDLRKDGSDDV-------TKQEGDDL 155 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--SEEEEEEECGGGCCTTTTCC-------CHHHHHHH
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccCCCCcc-------cHHHHHHH
Confidence 233456778999999999985433222 334455554433 2 39999999999874311100 01123445
Q ss_pred HHhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 173 LQLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 173 ~~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
....+.. ++. .||+++.|+.++++.+.+.+...
T Consensus 156 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 156 CQKLGCVAYIE------ASSVAKIGLNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHTCSCEEE------CBTTTTBSHHHHHHHHHHHHHCS
T ss_pred HHhcCCCEEEE------eecCCCCCHHHHHHHHHHHHHhc
Confidence 5545544 443 57888999999999998876654
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=139.62 Aligned_cols=169 Identities=19% Similarity=0.141 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||+|.+++....... .+++.......... ++. .+.|+||||.... ..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~~-----------~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESY---TPTVFERYMVNLQV-KGKPVHLHIWDTAGQDDY-----------DR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC----------CCCCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC---CCccceeEEEEEEE-CCEEEEEEEEECCCchhh-----------hH
Confidence 4579999999999999999999987653221 11111111222233 333 6889999996532 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc-----ccCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG-----LECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~-----~~~~~~ 168 (371)
.....+.++|++++|+|++++.+-... .++..+....+ . .|+++|+||+|.... ....+.+. ......
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 172 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCK-K--VPIIVVGCKTDLRKD--KSLVNKLRRNGLEPVTYHR 172 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECGGGGSC--HHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhhcc--chhhhhhcccccCcccHHH
Confidence 233446688999999999854322221 34445554432 2 399999999998765 32222211 001112
Q ss_pred HHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 169 LKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 169 l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+...++. .++. .||+++.|+.+|++.+...+....
T Consensus 173 ~~~~~~~~~~~~~~~------~SA~~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 173 GQEMARSVGAVAYLE------CSARLHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp HHHHHHHTTCSEEEE------CBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCEEEE------ecCCCCCCHHHHHHHHHHHHHHhh
Confidence 3445555554 3443 677888999999999987776544
No 69
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.70 E-value=9.6e-17 Score=158.14 Aligned_cols=176 Identities=16% Similarity=0.242 Sum_probs=115.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcc----hHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAE----SEYVSKE 92 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~----~~~~~~e 92 (371)
....+|+++|.+|+|||||+|+++|...+.... ..++|.......+.+ ++..+.||||||+.+.... .......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~-~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSN-VAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCC-CCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 356899999999999999999999886432221 233344333334444 7779999999998653211 1111111
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.. .++..+|++|+|+|++.+++..+..++..+... + .|+++|+||+|.........+++... +...
T Consensus 271 ~~----~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~-~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~ 336 (456)
T 4dcu_A 271 AL----KAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA-G----KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDH 336 (456)
T ss_dssp HH----HHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-T----CEEEEEEECGGGSCCCSSHHHHHHHH-----HHHH
T ss_pred HH----HHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHc-C----CCEEEEEEChhcCCCchHHHHHHHHH-----HHHh
Confidence 11 233456999999999988998888888777652 2 49999999999886533344443332 3333
Q ss_pred HHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCC
Q 040649 173 LQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQ 214 (371)
Q Consensus 173 ~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~ 214 (371)
+...+ .+++ ..||+++.|+.+|++.+...+......
T Consensus 337 ~~~~~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~~ 373 (456)
T 4dcu_A 337 FQFLDYAPIL------FMSALTKKRIHTLMPAIIKASENHSLR 373 (456)
T ss_dssp CGGGTTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTCC
T ss_pred cccCCCCCEE------EEcCCCCcCHHHHHHHHHHHHHHhccc
Confidence 33222 2333 368889999999999999888776543
No 70
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=1.6e-16 Score=137.85 Aligned_cols=165 Identities=15% Similarity=0.068 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ +++.......+.+ ++ ..+.++||||..... .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-----------~ 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYV---PTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------R 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCC---CSSCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCC---CcccceeEEEEEE-CCEEEEEEEEECCCCcchh-----------H
Confidence 45799999999999999999999875422111 1111111122233 33 478899999976532 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~~ 168 (371)
.....+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|.... ......+.. .....
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 156 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP-N--VPFLLIGTQIDLRDD--PKTLARLNDMKEKPICVEQ 156 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECTTSTTC--HHHHHHHTTTTCCCCCHHH
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccc--ccchhhcccccCcccCHHH
Confidence 23345678899999999985432222 235555655433 2 499999999998765 222111110 00112
Q ss_pred HHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 169 LKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 169 l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
...+....+. .++. .|++++.|+.+|++.+...+
T Consensus 157 ~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i 191 (194)
T 2atx_A 157 GQKLAKEIGACCYVE------CSALTQKGLKTVFDEAIIAI 191 (194)
T ss_dssp HHHHHHHHTCSCEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeCCCCCCHHHHHHHHHHHH
Confidence 3334444443 3333 67788899999999987654
No 71
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.70 E-value=1.6e-16 Score=133.60 Aligned_cols=161 Identities=19% Similarity=0.126 Sum_probs=95.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|++|+|||||+|.+++...... . .+++.......+.+ ++ ..+.++||||.... ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSC-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCC-C--CCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 347999999999999999999998764222 1 11111111222233 33 37889999996542 11
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-. ...++..+...... ...|+++|+||+|.........+ ....+..
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDKRQVSVE---------EAKNRAD 137 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGGCCSCHH---------HHHHHHH
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccccccCccCHH---------HHHHHHH
Confidence 1222334569999999998433222 13344445444331 12499999999997643111121 1333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .|++++.|+.++++.+.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~ 166 (168)
T 1u8z_A 138 QWNVNYVE------TSAKTRANVDKVFFDLMREIR 166 (168)
T ss_dssp HHTCEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HcCCeEEE------eCCCCCCCHHHHHHHHHHHHH
Confidence 44544444 577788999999999887654
No 72
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.69 E-value=7.2e-17 Score=141.63 Aligned_cols=165 Identities=16% Similarity=0.058 Sum_probs=98.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+|+|.+|+|||||++.+++....... .+.+.......... ++. .+.++||||.... .
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------D 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C---CCCSEEEEEEEEEC-C-CEEEEEEEEECCSGGG-----------T
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc---CCeecceeEEEEEE-CCEEEEEEEEECCCchhh-----------H
Confidence 35689999999999999999999976543221 12222222222233 444 4559999997432 2
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCc
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPK 167 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~ 167 (371)
.....++..+|++++|+|++++.+-... .++..+....+ . .|+++|+||+|.... ....+.+.. ....
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~ 167 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYP 167 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS-S--CCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHH
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhccc--hhhhhhhhccccccccHH
Confidence 2334467789999999999854333332 34555555432 2 499999999998765 222211110 0011
Q ss_pred hHHHHHHhcCCc-eEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 168 PLKEILQLCDNR-WVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 168 ~l~~~~~~~~~r-~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
....+....+.. ++ ..||+++.|+.+|++.+.+.
T Consensus 168 ~~~~~~~~~~~~~~~------~~SA~~g~gi~~l~~~l~~~ 202 (204)
T 4gzl_A 168 QGLAMAKEIGAVKYL------ECSALTQRGLKTVFDEAIRA 202 (204)
T ss_dssp HHHHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHhcCCcEEE------EeeCCCCCCHHHHHHHHHHH
Confidence 223344444432 33 36788899999999988754
No 73
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.69 E-value=1e-16 Score=157.26 Aligned_cols=164 Identities=18% Similarity=0.235 Sum_probs=107.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|.|+|...... ...+++|.........+ .+..+.||||||+.... .......+......
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIV-EDEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcee-cCCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 4799999999999999999999874211 22356666666666666 78899999999987531 11112334445556
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC-
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN- 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~- 178 (371)
++..+|++|+|+|++.+++..+..+..+++.. + .|+++|+||+|.... ..... ...+. .++.
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-~----~p~ilv~NK~D~~~~----~~~~~-------~~~~~-~lg~~ 140 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-T----VDTILVANKAENLRE----FEREV-------KPELY-SLGFG 140 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-T----CCEEEEEESCCSHHH----HHHHT-------HHHHG-GGSSC
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-C----CCEEEEEeCCCCccc----cHHHH-------HHHHH-hcCCC
Confidence 67889999999999988888887777777653 2 399999999996421 01111 01221 2222
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+ ...||+++.|+.+|++.+...++.
T Consensus 141 ~~------~~iSA~~g~gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 EP------IPVSAEHNINLDTMLETIIKKLEE 166 (439)
T ss_dssp SC------EECBTTTTBSHHHHHHHHHHHHHH
T ss_pred CE------EEEeccCCCCHHHHHHHHHHhccc
Confidence 22 336888999999999999887764
No 74
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.69 E-value=6.7e-17 Score=158.37 Aligned_cols=175 Identities=16% Similarity=0.205 Sum_probs=110.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch---HHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES---EYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~---~~~~~ei~ 94 (371)
...+|+++|++|+|||||+|+|+|....... ...++|.......+.+ ++..+.||||||+.+..... +... ..
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~--~~ 249 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYS--VL 249 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHH--HH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHH--HH
Confidence 4579999999999999999999998753221 1234454444444555 77889999999986533211 1111 01
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
. ...++..+|++|+|+|++++.+..+..++..+... . .|+++|+||+|.........+++... +...+.
T Consensus 250 ~-~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~~~~~~~~~~~-----~~~~l~ 318 (436)
T 2hjg_A 250 R-ALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMKEFEEN-----IRDHFQ 318 (436)
T ss_dssp H-HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCTTHHHHHHHH-----HHHHCG
T ss_pred H-HHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc---C--CcEEEEEECccCCCcchHHHHHHHHH-----HHHhcc
Confidence 1 11233456999999999988888887766666532 2 49999999999876532233333222 222322
Q ss_pred hc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.. +.+++ ..||+++.|+.+|++.+...+.....
T Consensus 319 ~~~~~~~~------~~SA~tg~~v~~l~~~i~~~~~~~~~ 352 (436)
T 2hjg_A 319 FLDYAPIL------FMSALTKKRIHTLMPAIIKASENHSL 352 (436)
T ss_dssp GGTTSCEE------ECCTTTCTTGGGHHHHHHHHHHHHTC
T ss_pred cCCCCCEE------EEecccCCCHHHHHHHHHHHHHHhhc
Confidence 22 22333 36888999999999999988876543
No 75
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.69 E-value=1.8e-16 Score=135.70 Aligned_cols=165 Identities=19% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... .. +.+.......... ++ ..+.++||||.......
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~-~~--~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 70 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDS-YD--PTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSIF---------- 70 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSC-CC--TTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCC-CC--CCccccEEEEEEE-CCEEEEEEEEeCCCchhhhHH----------
Confidence 357999999999999999999996654222 11 1111111222233 44 36789999997654221
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++-+-.. ..++..+...+.. ...|+++|+||+|.........+ ....+..
T Consensus 71 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~ 139 (181)
T 3t5g_A 71 -PQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHMERVISYE---------EGKALAE 139 (181)
T ss_dssp -CGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTTCCSCHH---------HHHHHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhcceecHH---------HHHHHHH
Confidence 2334667899999999984322221 2233334333321 12499999999997644212221 1344555
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
..+..++. .||+++.|+.+++..+...+....+
T Consensus 140 ~~~~~~~~------~Sa~~~~~v~~l~~~l~~~~~~~~~ 172 (181)
T 3t5g_A 140 SWNAAFLE------SSAKENQTAVDVFRRIILEAEKMDG 172 (181)
T ss_dssp HTTCEEEE------CCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred HhCCcEEE------EecCCCCCHHHHHHHHHHHHHHhcC
Confidence 55555444 5777889999999999887766544
No 76
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.69 E-value=1.2e-16 Score=138.28 Aligned_cols=166 Identities=10% Similarity=0.040 Sum_probs=101.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC------CccceeEEEEeE---Ee-eCCcEEEEEeCCCCCCCCcch
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS------SAITKTCEMKTT---VL-KDGQVVNVIDTPGLFDSSAES 86 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~------~~~t~~~~~~~~---~~-~~~~~i~liDTPG~~~~~~~~ 86 (371)
....+|+|+|.+|+|||||+|.+.|.......... ...|........ .. .....+.++||||.....
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~--- 88 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYN--- 88 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCS---
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHH---
Confidence 34589999999999999999999876542211100 111222222211 11 122368999999976531
Q ss_pred HHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhC----CCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 87 EYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFG----KKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 87 ~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~----~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
.....++..+|++|+|+|++.+.+......+..+...+. .....|+++|+||+|.... ...+
T Consensus 89 --------~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~--~~~~---- 154 (198)
T 3t1o_A 89 --------ASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA--LPVE---- 154 (198)
T ss_dssp --------HHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC--CCHH----
T ss_pred --------HHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc--cCHH----
Confidence 122335678899999999985444444444444433221 1123499999999997654 2222
Q ss_pred ccCCchHHHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 163 LECPKPLKEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+..++...+. .++. .||+++.|+.++++.+...+..
T Consensus 155 -----~~~~~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~i~~ 192 (198)
T 3t1o_A 155 -----MVRAVVDPEGKFPVLE------AVATEGKGVFETLKEVSRLVLA 192 (198)
T ss_dssp -----HHHHHHCTTCCSCEEE------CBGGGTBTHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHhcCCceEEE------EecCCCcCHHHHHHHHHHHHHH
Confidence 13344444444 3333 6788899999999998876543
No 77
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.69 E-value=9.9e-17 Score=149.50 Aligned_cols=166 Identities=17% Similarity=0.224 Sum_probs=108.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCC-CCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~-~~~~~~~~~~~ei~~~~ 97 (371)
...|+|+|++|+|||||+|+|+|....... ...++|.......+.. ++..+.++||||+. .. .......+....
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~~ 82 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKAA 82 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHHH
Confidence 358999999999999999999998753221 1122333222222333 67789999999986 21 112222333334
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++++|+|++. ++..+..+++.+.. ...|+++|+||+|.... ...+.+. +..+...++
T Consensus 83 ~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~~-~~~~~~~--------l~~l~~~~~ 147 (301)
T 1ega_A 83 SSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQE-KADLLPH--------LQFLASQMN 147 (301)
T ss_dssp TSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCCC-HHHHHHH--------HHHHHTTSC
T ss_pred HHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCcc-HHHHHHH--------HHHHHHhcC
Confidence 556778999999999986 88888766665542 12499999999998752 1222222 233333333
Q ss_pred C-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 N-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. .++ ..|++++.++.+|++.+...++.
T Consensus 148 ~~~~i------~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 148 FLDIV------PISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp CSEEE------ECCTTTTTTHHHHHHHHHTTCCB
T ss_pred cCceE------EEECCCCCCHHHHHHHHHHhCCc
Confidence 2 223 36778889999999999887765
No 78
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.69 E-value=1e-16 Score=138.56 Aligned_cols=162 Identities=14% Similarity=0.092 Sum_probs=96.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH-
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA- 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~- 94 (371)
...+|+|+|.+|+|||||+|.+++........ ...+.......+.+ ++ ..+.++||||... +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTE--ATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCC--CCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCCC--CCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 45799999999999999999999776533221 22222222333333 33 4789999999432 11
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++|+|+|++++.+-.. ..++..+...+. ....|+++|+||+|.........+ ....+.
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~v~~~---------~~~~~~ 154 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSAIQVPTD---------LAQKFA 154 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGGCCSCHH---------HHHHHH
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccceeCHH---------HHHHHH
Confidence 222334567899999999984322222 334445554431 122499999999997543111111 123344
Q ss_pred HhcCCceEeecCcchhhHhhH---HhHHHHHHHHHHHHh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRT---EQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~---~~i~~Ll~~i~~~~~ 209 (371)
...+..++. .|++++ .++.+++..+.+.+.
T Consensus 155 ~~~~~~~~~------~Sa~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 155 DTHSMPLFE------TSAKNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp HHTTCCEEE------CCSSSGGGGSCHHHHHHHHC----
T ss_pred HHcCCEEEE------EeCCcCCcccCHHHHHHHHHHHHh
Confidence 444555554 456667 889999988866543
No 79
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.69 E-value=6.1e-17 Score=136.48 Aligned_cols=160 Identities=18% Similarity=0.107 Sum_probs=98.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++........ ...+.......... ++ ..+.++||||.......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~~---------- 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYK--KTIGVDFLERQIQV-NDEDVRLMLWDTAGQEEFDAI---------- 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSS--CCCSSSEEEEEEEE-TTEEEEEEEECCTTGGGTTCC----------
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--CceEEEEEEEEEEE-CCEEEEEEEEcCCCcHhHHHH----------
Confidence 34799999999999999999999876532211 11122222223333 33 47899999995432111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|.........+ .+..+..
T Consensus 71 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~~ 137 (168)
T 1z2a_A 71 -TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVG-D--IPTALVQNKIDLLDDSCIKNE---------EAEGLAK 137 (168)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHC-S--CCEEEEEECGGGGGGCSSCHH---------HHHHHHH
T ss_pred -HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECcccCcccccCHH---------HHHHHHH
Confidence 2233557899999999985332221 234444444432 2 399999999997643111111 1334444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+.+++. .|++++.|+.++++.+.+.+.
T Consensus 138 ~~~~~~~~------~Sa~~~~~i~~l~~~l~~~~~ 166 (168)
T 1z2a_A 138 RLKLRFYR------TSVKEDLNVSEVFKYLAEKHL 166 (168)
T ss_dssp HHTCEEEE------CBTTTTBSSHHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHHh
Confidence 44544444 577788999999999876553
No 80
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.69 E-value=7.2e-17 Score=135.72 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=95.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
.+|+|+|++|+|||||+|.+++...... ..|.......+.. .+..+.++||||... +......
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~ 63 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRH 63 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHH
Confidence 3799999999999999999987664321 1122222333444 667899999999753 1223334
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+.++|++++|+|++++-+-. ....++...... ....|+++|+||+|.... ....+.... +. ...+.
T Consensus 64 ~~~~~d~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~~~~ 132 (164)
T 1r8s_A 64 YFQNTQGLIFVVDSNDRERVN--EAREELMRMLAEDELRDAVLLVFANKQDLPNA--MNAAEITDK-----LG--LHSLR 132 (164)
T ss_dssp HTTTCSEEEEEEETTCGGGHH--HHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GGGCS
T ss_pred HhccCCEEEEEEECCCHHHHH--HHHHHHHHHHhchhhcCCeEEEEEECcCCcCC--CCHHHHHHH-----hC--ccccc
Confidence 567889999999998542222 222333333321 112499999999998654 222221111 00 00111
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+. ....||+++.|+.++++.+...+.
T Consensus 133 ~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 133 HRNWY---IQATCATSGDGLYEGLDWLSNQLR 161 (164)
T ss_dssp SCCEE---EEECBTTTTBTHHHHHHHHHHHC-
T ss_pred CccEE---EEEcccCCCcCHHHHHHHHHHHHh
Confidence 11111 123678889999999999887654
No 81
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.69 E-value=3.3e-16 Score=138.38 Aligned_cols=159 Identities=14% Similarity=0.079 Sum_probs=96.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEE--EEeEEeeC-----------CcEEEEEeCCCCCCCCcc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCE--MKTTVLKD-----------GQVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~i~liDTPG~~~~~~~ 85 (371)
..+|+|+|.+|+|||||+|+|++...... ...|.... ...+.+.. ...+.||||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~----- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQE----- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHH-----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcH-----
Confidence 47899999999999999999998765221 11122211 22222211 3578999999932
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGL 163 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~ 163 (371)
.+.......+..+|++|+|+|++++.+. .....++..+.... ...|+++|+||+|..........
T Consensus 96 ------~~~~~~~~~~~~~d~iilV~D~~~~~s~--~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~----- 162 (217)
T 2f7s_A 96 ------RFRSLTTAFFRDAMGFLLMFDLTSQQSF--LNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNER----- 162 (217)
T ss_dssp ------HHHHHHHHHHTTCCEEEEEEETTCHHHH--HHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHH-----
T ss_pred ------hHHhHHHHHhcCCCEEEEEEECcCHHHH--HHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHH-----
Confidence 1233344556788999999999843221 22223333332211 23599999999997643111111
Q ss_pred cCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 164 ECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 164 ~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+..+....+..++. .|++++.++.+|++.+...+.
T Consensus 163 ----~~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~ 198 (217)
T 2f7s_A 163 ----QARELADKYGIPYFE------TSAATGQNVEKAVETLLDLIM 198 (217)
T ss_dssp ----HHHHHHHHTTCCEEE------EBTTTTBTHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHCCCcEEE------EECCCCCCHHHHHHHHHHHHH
Confidence 134445555555554 567788999999999876554
No 82
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.69 E-value=1.7e-17 Score=163.44 Aligned_cols=164 Identities=19% Similarity=0.186 Sum_probs=102.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..++|+|+|++|+|||||+|+|+|...... ....++|.........+ .+..+.||||||+.... ......+....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCcc---hHHHHHHHHHH
Confidence 357899999999999999999999765322 23356666666655555 67899999999987432 22344455556
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
..++..+|++|+|+|+..+++..+..+...+.. ...|+++|+||+|..... ....++. ..--
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~-----~~~pvilV~NK~D~~~~~-~~~~e~~------------~lg~ 158 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANIYDFY------------SLGF 158 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT-----CCSCEEEEEECC----------CCSG------------GGSS
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH-----cCCCEEEEEECccchhhh-hhHHHHH------------HcCC
Confidence 666677899999999998899988887777764 234999999999976331 1111111 1001
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..++ ..||+++.|+.+|++.+...+..
T Consensus 159 ~~~~------~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 159 GEPY------PISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp SSEE------ECCTTTCTTHHHHHHHHHTTGGG
T ss_pred CceE------EeecccccchHHHHHHHHhhccc
Confidence 1222 36788899999999998876653
No 83
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.69 E-value=5.2e-16 Score=131.76 Aligned_cols=163 Identities=20% Similarity=0.148 Sum_probs=92.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|++|+|||||+|.++|....... ...+.+. ....+.+ ++. .+.++||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~--~~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDV--YERTLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSE--EEEEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Cccccce--eEEEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 3579999999999999999999988753321 1222222 2222333 333 68899999975420 111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|.........++ ...+..
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~---------~~~~~~ 139 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARCREVSVEE---------GRACAV 139 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTTCCSCHHH---------HHHHHH
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccccccCHHH---------HHHHHH
Confidence 12334567899999999984332221 223333433211 1124999999999987542112211 222333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++. .||+++.|+.+|++.+.+.+.
T Consensus 140 ~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~ 168 (175)
T 2nzj_A 140 VFDCKFIE------TSATLQHNVAELFEGVVRQLR 168 (175)
T ss_dssp HHTSEEEE------CBTTTTBSHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EecCCCCCHHHHHHHHHHHHH
Confidence 33434443 677888999999999886654
No 84
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.69 E-value=4.8e-16 Score=135.79 Aligned_cols=163 Identities=18% Similarity=0.123 Sum_probs=99.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+..+|+|+|.+|+|||||+|.+++...... . .+++.......+.+ ++ ..+.||||||.....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~-~--~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 76 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDEFVED-Y--EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDYA----------- 76 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSCCCTT-C--CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCCH-----------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCCCCCC-C--CCccceEEEEEEEE-CCEEEEEEEEcCCChhhhH-----------
Confidence 3458999999999999999999998764222 1 11111111222333 44 378899999976531
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
......+..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|.........++ +..+.
T Consensus 77 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~---------~~~~~ 146 (206)
T 2bov_A 77 AIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKE-DENVPFLLVGNKSDLEDKRQVSVEE---------AKNRA 146 (206)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTT-CSCCCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred HHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEeccCccccccccHHH---------HHHHH
Confidence 111222345699999999984322111 233444444432 1124999999999976432122221 33344
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+..++. .|++++.|+.+|+..+...+..
T Consensus 147 ~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 147 EQWNVNYVE------TSAKTRANVDKVFFDLMREIRA 177 (206)
T ss_dssp HHHTCEEEE------ECTTTCTTHHHHHHHHHHHHHH
T ss_pred HHhCCeEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 444544444 5677889999999998876643
No 85
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.68 E-value=7.3e-16 Score=131.44 Aligned_cols=165 Identities=17% Similarity=0.139 Sum_probs=98.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+.....+|+|+|.+|+|||||+|++++....... .+++.........+ ++ ..+.++||||........
T Consensus 5 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~------ 74 (181)
T 2fn4_A 5 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDY---DPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMR------ 74 (181)
T ss_dssp CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCH------
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhCcCcccc---CCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHH------
Confidence 3445689999999999999999999987542221 11111111122333 43 368899999976543221
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHh-CCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLF-GKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~-~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
.. .+..+|++++|+|++++.+-.. ..++..+.... ... .|+++|+||+|.......... ...
T Consensus 75 -~~----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~---------~~~ 138 (181)
T 2fn4_A 75 -EQ----YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQRQVPRS---------EAS 138 (181)
T ss_dssp -HH----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGGCCSCHH---------HHH
T ss_pred -HH----HHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccCHH---------HHH
Confidence 11 2234699999999984322111 22333332222 223 499999999997643111111 123
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+....+..++. .|++++.|+.+|++.+...+...
T Consensus 139 ~~~~~~~~~~~~------~Sa~~~~gv~~l~~~l~~~~~~~ 173 (181)
T 2fn4_A 139 AFGASHHVAYFE------ASAKLRLNVDEAFEQLVRAVRKY 173 (181)
T ss_dssp HHHHHTTCEEEE------CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCeEEE------ecCCCCCCHHHHHHHHHHHHHHh
Confidence 333444444444 57778899999999998776543
No 86
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.68 E-value=5.6e-17 Score=141.87 Aligned_cols=162 Identities=17% Similarity=0.094 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC--CccccCCCCCccce--eEEEEeEEeeC---CcEEEEEeCCCCCCCCcchHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR--RAFKASAGSSAITK--TCEMKTTVLKD---GQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~--~~~~~~~~~~~~t~--~~~~~~~~~~~---~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
...+|+|+|++|+|||||+|++++. ..... ...|. ......+.+.+ ...+.|+||||...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~--------- 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL--------- 85 (208)
T ss_dssp EEEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHH---------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEEEEEEECCcccEEEEEEEECCCcHH---------
Confidence 4579999999999999999999987 33211 11122 12223333412 34789999999632
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCC-CCCCeEEEEEeCCCCCC-CchhhHHHHhcccCCc
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGK-KIFDYMIVVFTGGDDLE-DNEKTLEDYLGLECPK 167 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~-~~~~~l~~~l~~~~~~ 167 (371)
+.......+..+|++|+|+|++++.+-. ...++..+....+. ....|+++|+||+|... ......+
T Consensus 86 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~--------- 154 (208)
T 2yc2_C 86 --YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLD--------- 154 (208)
T ss_dssp --HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHH---------
T ss_pred --HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHH---------
Confidence 3344556678899999999998543322 23444555554330 01249999999999875 2111111
Q ss_pred hHHHHHHhcCCceEeecCcchhhHhh-HHhHHHHHHHHHHHHh
Q 040649 168 PLKEILQLCDNRWVLFDNKTKYEAKR-TEQVQQLLSLVNAVNV 209 (371)
Q Consensus 168 ~l~~~~~~~~~r~~~f~~~~~~sa~~-~~~i~~Ll~~i~~~~~ 209 (371)
.+..+....+..++. .|+++ +.|+.++++.+...+.
T Consensus 155 ~~~~~~~~~~~~~~~------~Sa~~~~~gi~~l~~~i~~~~~ 191 (208)
T 2yc2_C 155 MAQDWATTNTLDFFD------VSANPPGKDADAPFLSIATTFY 191 (208)
T ss_dssp HHHHHHHHTTCEEEE------CCC-------CHHHHHHHHHHH
T ss_pred HHHHHHHHcCCEEEE------eccCCCCcCHHHHHHHHHHHHH
Confidence 234455555544444 56777 8999999998876554
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=7.8e-17 Score=139.04 Aligned_cols=160 Identities=15% Similarity=0.122 Sum_probs=96.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++....... . |.......+.+ ++..+.++||||...... ..
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIGGQESLRS-----------SW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-C----CSCSSCEEEEE-TTEEEEEEECCC----CG-----------GG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc-C----CCccceEEEEE-CCEEEEEEECCCCHhHHH-----------HH
Confidence 4589999999999999999999977653221 1 11122223344 678899999999754221 12
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
...+.++|++++|+|++++-+-.. ...++...... ....|+++|+||+|.... ...++. ...+..
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i---------~~~~~~ 144 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEI---------SQFLKL 144 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTSGGGTTCEEEEEEECTTSTTC--CCHHHH---------HHHHTG
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhchhhCCCeEEEEEECCCCcCC--CCHHHH---------HHHhCh
Confidence 234567899999999986533222 12233332221 122499999999998754 222211 111211
Q ss_pred --cC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 --CD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 --~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.. ..+.. ...||+++.|+++|++.+.+.+...
T Consensus 145 ~~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 145 TSIKDHQWHI----QACCALTGEGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp GGCCSSCEEE----EECBTTTTBTHHHHHHHHHHHHCC-
T ss_pred hhhcCCCcEE----EEccCCCCcCHHHHHHHHHHHHHHH
Confidence 11 11111 2368888999999999998877654
No 88
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=2.3e-16 Score=137.07 Aligned_cols=166 Identities=19% Similarity=0.151 Sum_probs=99.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|+|++...........+.+. ...... .....+.++||||..... .
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 71 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISCDKSVCTLQITDTTGSHQFP-----------A 71 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEETTEEEEEEEEECCGGGSCH-----------H
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEECCEEEEEEEEeCCChHHhH-----------H
Confidence 3458999999999999999999998665322111111111 111222 122378999999965421 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.. ..++..+....+.....|+++|+||+|..... ..... ...+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~~~~ 141 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-VDTRE---------AQAVAQ 141 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-SCHHH---------HHHHHH
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCccc-cCHHH---------HHHHHH
Confidence 11222345699999999984322222 23445555544321224999999999976431 11111 223334
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
..+..++. .||+++.|+.+|++.+...+....
T Consensus 142 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~~ 173 (199)
T 2gf0_A 142 EWKCAFME------TSAKMNYNVKELFQELLTLETRRN 173 (199)
T ss_dssp HHTCEEEE------CBTTTTBSHHHHHHHHHHHCSSSC
T ss_pred HhCCeEEE------EecCCCCCHHHHHHHHHHHHhhhh
Confidence 44444443 577788999999999988776543
No 89
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.68 E-value=2.4e-17 Score=141.60 Aligned_cols=156 Identities=14% Similarity=0.120 Sum_probs=94.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.+++....... ...+.+ ...+.+ ++..+.++||||.... ....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~~~----~~~~~~-~~~~~~i~Dt~G~~~~-----------~~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIGSN----VEEIVI-NNTRFLMWDIGGQESL-----------RSSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSSSS----CEEEEE-TTEEEEEEEESSSGGG-----------TCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCcee----eEEEEE-CCEEEEEEECCCCHhH-----------HHHH
Confidence 4689999999999999999999988752111 111211 223344 6788999999997532 1123
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHHH
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...+..+|++++|+|++++.+-.. ...++...... ....|+++|+||+|..... ...+.+++.. .
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~i~~~~~~----------~ 150 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISV--TREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKL----------T 150 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTG----------G
T ss_pred HHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHhChhhCCCeEEEEEECCCcccCCCHHHHHHHhCc----------c
Confidence 445678899999999986543322 22233332221 1224999999999987541 1112221110 0
Q ss_pred hcC-CceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 175 LCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 175 ~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
... ..+.. ...||+++.|+.+|++.+.+
T Consensus 151 ~~~~~~~~~----~~~Sa~~g~gi~~l~~~l~~ 179 (181)
T 2h17_A 151 SIKDHQWHI----QACCALTGEGLCQGLEWMMS 179 (181)
T ss_dssp GCCSSCEEE----EECBTTTTBTHHHHHHHHHT
T ss_pred cccCCceEE----EEccCCCCcCHHHHHHHHHh
Confidence 011 11111 23678889999999998754
No 90
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.68 E-value=6.5e-16 Score=133.06 Aligned_cols=166 Identities=14% Similarity=0.176 Sum_probs=104.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+|+|++|+|||||+|+|+|...+... .+++|.......+.+ ++..+.++||||......... ...+....
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~--~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~~ 80 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGN--WPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARDY 80 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEE--CTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccC--CCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHHH
Confidence 3479999999999999999999997654332 233444444444555 678899999999876532210 11111111
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
. ....+|++++|+|.++ + .... .++....... .|+++|+||+|.... .. .......+...++
T Consensus 81 ~-~~~~~~~~i~v~d~~~-~-~~~~---~~~~~~~~~~--~piilv~nK~Dl~~~--~~--------~~~~~~~~~~~~~ 142 (188)
T 2wjg_A 81 I-INEKPDLVVNIVDATA-L-ERNL---YLTLQLMEMG--ANLLLALNKMDLAKS--LG--------IEIDVDKLEKILG 142 (188)
T ss_dssp H-HHHCCSEEEEEEEGGG-H-HHHH---HHHHHHHTTT--CCEEEEEECHHHHHH--TT--------CCCCHHHHHHHHT
T ss_pred H-hccCCCEEEEEecchh-H-HHHH---HHHHHHHhcC--CCEEEEEEhhhcccc--cc--------chHHHHHHHHHhC
Confidence 1 1124799999999873 2 1122 2333322222 499999999996422 10 1112445555555
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
.+++. .|++++.++.+|++.+...+....
T Consensus 143 ~~~~~------~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 143 VKVVP------LSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp SCEEE------CBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred CCeEE------EEecCCCCHHHHHHHHHHHHHhcc
Confidence 55554 577888999999999998887654
No 91
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.68 E-value=1.3e-16 Score=138.93 Aligned_cols=174 Identities=12% Similarity=0.081 Sum_probs=95.9
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.+.....+|+|+|.+|+|||||+|.++|......... ...+.......+.......+.+|||||........ +.
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~---~~-- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNETLF-LESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPT---FD-- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGGGG-CCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTT---CC--
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcceee-eccccceeeeeccCCCeeEEEEEECCCCHHHHhhh---hh--
Confidence 3444678999999999999999999998644221111 11111111111111234589999999976532210 00
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHH--HHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLE--DYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~--~~l~~~~~~~l~~ 171 (371)
...++.++|++|+|+|+++++......+..++..........|+++|+||+|+..+. .... ..+.. .....
T Consensus 89 ---~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~v~~---~~~~~ 161 (196)
T 3llu_A 89 ---YEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDD-HKIETQRDIHQ---RANDD 161 (196)
T ss_dssp ---HHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHH-HHHHHHHHHHH---HHHHH
T ss_pred ---cccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchh-hhhHHHhHHHH---HHHHH
Confidence 012344679999999999764444455555665542111124999999999987541 1111 11110 01222
Q ss_pred HHH----hcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 172 ILQ----LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 172 ~~~----~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.. ..+..++ ..||++ .|+.+++..+...
T Consensus 162 ~~~~~~~~~~~~~~------e~Sa~~-~~v~~~f~~l~~~ 194 (196)
T 3llu_A 162 LADAGLEKLHLSFY------LTSIYD-HSIFEAFSKVVQK 194 (196)
T ss_dssp HHHTTCTTSCEEEE------EECTTS-THHHHHHHHHHHH
T ss_pred HHHhhhhcCCcceE------EEEech-hhHHHHHHHHHHH
Confidence 333 1222222 368888 9999999887654
No 92
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.68 E-value=1.1e-16 Score=136.45 Aligned_cols=166 Identities=17% Similarity=0.069 Sum_probs=99.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC---cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
....+|+|+|++|+|||||+|.+++........ +.++.......+.+ ++ ..+.++||||.......
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~Dt~G~~~~~~~-------- 72 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYK--QTIGLDFFLRRITL-PGNLNVTLQIWDIGGQTIGGKM-------- 72 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHH--HTTTSSEEEEEEEE-TTTEEEEEEEEECTTCCTTCTT--------
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCC--CceeEEEEEEEEEe-CCCCEEEEEEEECCCCccccch--------
Confidence 345899999999999999999999876432111 11111222333344 33 57899999997653221
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC-CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK-IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
....+..+|++++|+|++++.+-.. ..++..+....... ...|+++|+||+|.........+ ....
T Consensus 73 ---~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~---------~~~~ 140 (178)
T 2hxs_A 73 ---LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPE---------KHLR 140 (178)
T ss_dssp ---HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHH---------HHHH
T ss_pred ---hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHH---------HHHH
Confidence 1223567899999999985433222 23444444432110 11248999999997643111111 1233
Q ss_pred HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 172 ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
+....+..++. .||+++.|+.++++.+...+...
T Consensus 141 ~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 174 (178)
T 2hxs_A 141 FCQENGFSSHF------VSAKTGDSVFLCFQKVAAEILGI 174 (178)
T ss_dssp HHHHHTCEEEE------ECTTTCTTHHHHHHHHHHHHTTC
T ss_pred HHHHcCCcEEE------EeCCCCCCHHHHHHHHHHHHHhh
Confidence 44444444443 57778899999999998776543
No 93
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.68 E-value=4.7e-16 Score=130.34 Aligned_cols=158 Identities=17% Similarity=0.164 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+++|++|+|||||+|.+++....... .+.+.......... ++ ..+.++||||...... ..
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~~----~~------- 68 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEC---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSA----MR------- 68 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCCH----HH-------
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCCchhhhH----HH-------
Confidence 68999999999999999999987643221 11111111222223 33 3578999999765321 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|..... .... ....+....
T Consensus 69 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~~-~~~~---------~~~~~~~~~ 137 (166)
T 2ce2_X 69 DQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAART-VESR---------QAQDLARSY 137 (166)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SCHH---------HHHHHHHHH
T ss_pred HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhcc-cCHH---------HHHHHHHHc
Confidence 112234699999999984322221 3344444444331 124999999999977531 1111 133344444
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.+++. .|++++.|+.++++.+...+.
T Consensus 138 ~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 164 (166)
T 2ce2_X 138 GIPYIE------TSAKTRQGVEDAFYTLVREIR 164 (166)
T ss_dssp TCCEEE------ECTTTCTTHHHHHHHHHHHHH
T ss_pred CCeEEE------ecCCCCCCHHHHHHHHHHHHH
Confidence 555554 567788999999999987664
No 94
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.68 E-value=2.1e-16 Score=138.27 Aligned_cols=164 Identities=15% Similarity=0.092 Sum_probs=99.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|.|++...... .....+.......+.+ ++ ..+.||||||.....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~----------- 71 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMV-DDRLVTMQIWDTAGQERFQ----------- 71 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEES-SSCEEEEEEEEECSSGGGS-----------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------
Confidence 4568999999999999999999998775322 1222233333333333 33 478999999964321
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
......+..+|++|+|+|++++.+-.. ..++..+....... ...|+++|+||+|..... ...+. +..
T Consensus 72 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~~~~~---------~~~ 141 (207)
T 1vg8_A 72 SLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQ-VATKR---------AQA 141 (207)
T ss_dssp CSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCC-SCHHH---------HHH
T ss_pred HhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcccc-cCHHH---------HHH
Confidence 112345678899999999985432222 23344444443210 124999999999987331 11111 222
Q ss_pred HHH-hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 172 ILQ-LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 172 ~~~-~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.. ..+..++. .||+++.|+.+|++.+...+..
T Consensus 142 ~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 175 (207)
T 1vg8_A 142 WCYSKNNIPYFE------TSAKEAINVEQAFQTIARNALK 175 (207)
T ss_dssp HHHHTTSCCEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred HHHhcCCceEEE------EeCCCCCCHHHHHHHHHHHHHH
Confidence 332 22333333 6778889999999998876653
No 95
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.68 E-value=2.3e-16 Score=135.29 Aligned_cols=166 Identities=15% Similarity=0.035 Sum_probs=101.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|+|||||+|.+++...........+ ......... ++. .+.++||||.... ...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~ 69 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DRL 69 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TTT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc---ceeEEEEEE-CCEEEEEEEEECCCCHhH-----------HHH
Confidence 47999999999999999999997654322111111 111112222 333 5679999997542 122
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~~l 169 (371)
....+..+|++++|+|++++.+-... .++..+....+ ..|+++|+||+|.... ....+.+.. ......
T Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 144 (186)
T 1mh1_A 70 RPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQG 144 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc--chhhhhhcccccccCCHHHH
Confidence 33456788999999999854333222 35555655443 2499999999998754 222211110 011123
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+. +++. .||+++.|+.+|++.+...+..
T Consensus 145 ~~~~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 145 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHSC
T ss_pred HHHHHhcCCcEEEE------ecCCCccCHHHHHHHHHHHHhc
Confidence 334444443 3333 6778889999999999887754
No 96
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.68 E-value=2.8e-16 Score=134.75 Aligned_cols=166 Identities=22% Similarity=0.170 Sum_probs=98.4
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~ 90 (371)
++...+..+|+|+|++|+|||||+|++++........ +...... ...... ++. .+.++||||.......
T Consensus 12 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~--~t~~~~~-~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----- 82 (183)
T 3kkq_A 12 PSENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYD--PTIEDSY-LKHTEI-DNQWAILDVLDTAGQEEFSAM----- 82 (183)
T ss_dssp --CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCC--TTCCEEE-EEEEEE-TTEEEEEEEEECCSCGGGCSS-----
T ss_pred CccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCC--CCcccee-EEEEEe-CCcEEEEEEEECCCchhhHHH-----
Confidence 3445567899999999999999999999765432211 1111111 222233 444 4667999996543221
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPL 169 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l 169 (371)
. ..++..+|++++|+|++++.+-.. ..++..+...... ...|+++|+||+|.........+ ..
T Consensus 83 --~----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~v~~~---------~~ 146 (183)
T 3kkq_A 83 --R----EQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHLRKVTRD---------QG 146 (183)
T ss_dssp --H----HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTTCCSCHH---------HH
T ss_pred --H----HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhccCcCHH---------HH
Confidence 1 122334699999999985322211 2333444333221 22499999999997653212221 13
Q ss_pred HHHHHhcCCceEeecCcchhhHh-hHHhHHHHHHHHHHHHh
Q 040649 170 KEILQLCDNRWVLFDNKTKYEAK-RTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~r~~~f~~~~~~sa~-~~~~i~~Ll~~i~~~~~ 209 (371)
..+...++..++. .|++ ++.|+.++++.+.+.+.
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~~~v~~l~~~l~~~i~ 181 (183)
T 3kkq_A 147 KEMATKYNIPYIE------TSAKDPPLNVDKTFHDLVRVIR 181 (183)
T ss_dssp HHHHHHHTCCEEE------EBCSSSCBSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCeEEE------eccCCCCCCHHHHHHHHHHHHh
Confidence 4455555655555 4666 67899999999887664
No 97
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.68 E-value=4e-17 Score=144.39 Aligned_cols=168 Identities=18% Similarity=0.163 Sum_probs=102.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|.+|+|||||+|+|+|...........+.+ ..........+ ..+.+|||||.......
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~--~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------- 77 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAV--NHPVTFLDDQGNVIKFNVWDTAGQEKKAVL--------- 77 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEE--EEEEEEEBTTSCEEEEEEEEECSGGGTSCC---------
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee--eEEEEEEeCCCcEEEEEEEecCCchhhchH---------
Confidence 345899999999999999999999876532211111111 11111222122 46899999996543221
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
....+..+|++|+|+|++++.+..+ ..++..+....+.. .|+++|+||+|.......... ....+.
T Consensus 78 --~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~---------~~~~~~ 144 (218)
T 4djt_A 78 --KDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKK---------LVMEVL 144 (218)
T ss_dssp --CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHH---------HHHHHT
T ss_pred --HHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHH---------HHHHHH
Confidence 1223556899999999985443332 34455666555544 399999999997643111111 122333
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCC
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQ 214 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~ 214 (371)
...+..++. .||+++.|+.++++.+...+......
T Consensus 145 ~~~~~~~~~------~Sa~~g~gv~~l~~~l~~~~~~~~~~ 179 (218)
T 4djt_A 145 KGKNYEYFE------ISAKTAHNFGLPFLHLARIFTGRPDL 179 (218)
T ss_dssp TTCCCEEEE------EBTTTTBTTTHHHHHHHHHHHCCTTC
T ss_pred HHcCCcEEE------EecCCCCCHHHHHHHHHHHHhccccc
Confidence 333434443 57788899999999999888776553
No 98
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.68 E-value=2.4e-16 Score=132.63 Aligned_cols=160 Identities=16% Similarity=0.124 Sum_probs=94.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
..+|+++|.+|+|||||+|++++....... .+++........... ....+.++||||...... ..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~---~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~----~~------- 68 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY---DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA----MR------- 68 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC---CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT----HH-------
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC---CCCccceEEEEEEECCEEEEEEEEECCChHHHHH----HH-------
Confidence 378999999999999999999986542221 111111111222221 234688999999765321 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+..+|++++|+|++++.+-.. ..++..+...... ...|+++|+||+|.........+ ....+....
T Consensus 69 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 138 (167)
T 1c1y_A 69 DLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDERVVGKE---------QGQNLARQW 138 (167)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECccccccccCCHH---------HHHHHHHHc
Confidence 112234699999999985322222 2344444443321 22499999999997643111111 123344433
Q ss_pred -CCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 177 -DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 177 -~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+..++. .||+++.|+++|++.+.+.+
T Consensus 139 ~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 165 (167)
T 1c1y_A 139 CNCAFLE------SSAKSKINVNEIFYDLVRQI 165 (167)
T ss_dssp TSCEEEE------CBTTTTBSHHHHHHHHHHHH
T ss_pred cCCcEEE------ecCCCCCCHHHHHHHHHHHH
Confidence 333333 67788899999999987655
No 99
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.68 E-value=3.5e-16 Score=137.87 Aligned_cols=119 Identities=18% Similarity=0.232 Sum_probs=73.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC--CcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD--GQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... . .+++ .....+.+.. +..+.||||||... ....
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~-~--~~~~--~~~~~~~~~~~~~~~~~i~Dt~G~~~-------~~~~--- 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDT-Q--TSIT--DSSAIYKVNNNRGNSLTLIDLPGHES-------LRFQ--- 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCB-C--CCCS--CEEEEEECSSTTCCEEEEEECCCCHH-------HHHH---
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccc-c--CCcc--eeeEEEEecCCCccEEEEEECCCChh-------HHHH---
Confidence 457999999999999999999998764322 1 1112 2222344422 56899999999642 1111
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHh----CCCCCCeEEEEEeCCCCCCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLF----GKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~----~~~~~~~~ilv~tk~D~~~~ 152 (371)
....++.++|++|+|+|+++ +..........+...+ ......|+++|+||+|....
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 22334667899999999983 3222333333333321 11222499999999998755
No 100
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.67 E-value=8.6e-16 Score=132.61 Aligned_cols=162 Identities=16% Similarity=0.130 Sum_probs=96.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|.+|+|||||+|.|++....... .+.+.......+.. ++ ..+.||||||.... ..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 84 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEY-----------SA 84 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC-----------------
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCChHHH-----------HH
Confidence 4579999999999999999999987643221 11121121222333 33 35889999996432 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++++|+|++++.+-.+ ..++..+...... ...|+++|+||+|..... ...+ .+..+..
T Consensus 85 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~~~-~~~~---------~~~~~~~ 153 (190)
T 3con_A 85 MRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPTRT-VDTK---------QAHELAK 153 (190)
T ss_dssp -----CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCCC-SCHH---------HHHHHHH
T ss_pred HHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCccc-CCHH---------HHHHHHH
Confidence 23345678899999999985432222 2334444444321 124999999999976531 1111 1333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..+.+++. .|++++.|+.++++.+...+...
T Consensus 154 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 154 SYGIPFIE------TSAKTRQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp HHTCCEEE------CCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HcCCeEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 44544444 57778899999999998776654
No 101
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.67 E-value=5.4e-16 Score=142.31 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=100.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|+|++|+|||||+|.|+|...+... .+++|.......+.. +..+.+|||||......... .+.+.....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~--~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~~--~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGN--WPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYSP--EAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCS--SSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccC--CCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCCh--HHHHHHHHH
Confidence 368999999999999999999998754332 234554333322221 66799999999886543221 111222111
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....+|++++|+|+++ + .....+...+.+ . . .|+++|+||+|..... . .......+....+.
T Consensus 77 -~~~~~d~vi~V~D~t~-~-e~~~~~~~~l~~-~--~--~p~ilv~NK~Dl~~~~--~--------~~~~~~~l~~~lg~ 138 (272)
T 3b1v_A 77 -LSQRADSILNVVDATN-L-ERNLYLTTQLIE-T--G--IPVTIALNMIDVLDGQ--G--------KKINVDKLSYHLGV 138 (272)
T ss_dssp -HTTCCSEEEEEEEGGG-H-HHHHHHHHHHHH-T--C--SCEEEEEECHHHHHHT--T--------CCCCHHHHHHHHTS
T ss_pred -hcCCCCEEEEEecCCc-h-HhHHHHHHHHHh-c--C--CCEEEEEEChhhCCcC--C--------cHHHHHHHHHHcCC
Confidence 1246899999999983 2 122223333333 1 2 3999999999965221 0 11123444444455
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
++++ .||+++.|+++|++.+...+..
T Consensus 139 ~vi~------~SA~~g~gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 139 PVVA------TSALKQTGVDQVVKKAAHTTTS 164 (272)
T ss_dssp CEEE------CBTTTTBSHHHHHHHHHHSCTT
T ss_pred CEEE------EEccCCCCHHHHHHHHHHHHhh
Confidence 5554 6788899999999999887654
No 102
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.67 E-value=5e-16 Score=135.35 Aligned_cols=173 Identities=18% Similarity=0.117 Sum_probs=98.1
Q ss_pred CCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHH
Q 040649 11 KPTSSSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEY 88 (371)
Q Consensus 11 ~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~ 88 (371)
+.+.+.....+|+|+|.+|+|||||+|.++|......... .++.......+.+ ++. .+.++||||.... ...
T Consensus 15 ~~~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~---~~~ 88 (195)
T 3cbq_A 15 YFQGQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEP--ENPEDTYERRIMV-DKEEVTLVVYDIWEQGDA---GGW 88 (195)
T ss_dssp -------CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTT--TSCTTEEEEEEEE-TTEEEEEEEECCCCCSGG---GHH
T ss_pred cCCCCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCC--CcccceEEEEEEE-CCEEEEEEEEecCCCccc---hhh
Confidence 3444555678999999999999999999987543212111 1122222222333 443 5778999997542 111
Q ss_pred HHHHHHHHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCc
Q 040649 89 VSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPK 167 (371)
Q Consensus 89 ~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~ 167 (371)
+. ..++..+|++|+|+|++++.+-. ...++..+....+. ...|+++|+||+|+........++
T Consensus 89 ----~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~~~v~~~~-------- 152 (195)
T 3cbq_A 89 ----LR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLEE-------- 152 (195)
T ss_dssp ----HH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTTCCSCHHH--------
T ss_pred ----hH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhccccCCcCHHH--------
Confidence 11 12234569999999998432211 12334444433221 124999999999986442122221
Q ss_pred hHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 168 PLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 168 ~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+....+.+++. .||+++.++.++++.+...+....
T Consensus 153 -~~~~a~~~~~~~~e------~Sa~~~~~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 153 -GRHLAGTLSCKHIE------TSAALHHNTRELFEGAVRQIRLRR 190 (195)
T ss_dssp -HHHHHHHTTCEEEE------EBTTTTBSHHHHHHHHHHHHHTTC
T ss_pred -HHHHHHHhCCEEEE------EcCCCCCCHHHHHHHHHHHHHHhc
Confidence 23344444444433 577888999999999987766543
No 103
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=7.9e-16 Score=144.06 Aligned_cols=177 Identities=12% Similarity=0.125 Sum_probs=100.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC--CCccc--eeEEE---------------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG--SSAIT--KTCEM--------------------------------- 60 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--~~~~t--~~~~~--------------------------------- 60 (371)
..++|+|+|.+|+|||||+|+|+|...++.+.. +...+ .....
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 447899999999999999999999886433211 00000 00000
Q ss_pred --------------------EeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhcCCceEEEEEEeC-CCCC
Q 040649 61 --------------------KTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAKDGIHAVLLVFSV-RSRF 117 (371)
Q Consensus 61 --------------------~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~~~~d~vl~v~d~-~~~~ 117 (371)
..+..+.+..+.||||||+...... .......+......++..+|++++|+|+ +.++
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~ 182 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL 182 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch
Confidence 0011123467999999999753210 0112233444455556678999999987 4445
Q ss_pred CHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhh---
Q 040649 118 SQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKR--- 193 (371)
Q Consensus 118 ~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~--- 193 (371)
...+ ..++..+.. ...|+++|+||+|...... ...+++.. .+..++..++++.+ .|+.+
T Consensus 183 ~~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~~-~~~~~~~~--------~~~~~~~~~~~v~~---~sa~~~~~ 245 (315)
T 1jwy_B 183 ANSDALQLAKEVDP-----EGKRTIGVITKLDLMDKGT-DAMEVLTG--------RVIPLTLGFIGVIN---RSQEDIIA 245 (315)
T ss_dssp TTCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSSC-CCHHHHTT--------SSSCCTTCEEECCC---CCHHHHSS
T ss_pred hhhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcch-HHHHHHhC--------CCccCCCCeEEEec---CChhhhcc
Confidence 4333 244444331 2249999999999875521 11222211 00112234444444 34555
Q ss_pred HHhHHHHHHHHHHHHhhc
Q 040649 194 TEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 194 ~~~i~~Ll~~i~~~~~~~ 211 (371)
+.++.+|++.+...++..
T Consensus 246 ~~gv~~l~~~~~~~~~~~ 263 (315)
T 1jwy_B 246 KKSIRESLKSEILYFKNH 263 (315)
T ss_dssp SCCHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhCC
Confidence 789999999999988864
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=2.5e-16 Score=134.93 Aligned_cols=161 Identities=16% Similarity=0.124 Sum_probs=96.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|++|+|||||+|.+++........ ..+ .....+.+ ++..+.++||||...... .
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-t~~----~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTKP-TIG----FNVETLSY-KNLKLNVWDLGGQTSIRP-----------Y 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEECS-STT----CCEEEEEE-TTEEEEEEEEC----CCT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccCC-cCc----cceEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 345899999999999999999999766522211 111 22233344 678899999999765321 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ...++...... ....|+++|+||+|.... ....+. ...+.
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i---------~~~~~ 145 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMST--ASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEV---------SKELN 145 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHH--HHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHH---------HHHTT
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHH---------HHHhC
Confidence 2345678899999999985543222 22334443321 123599999999998654 222211 11111
Q ss_pred hc--CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LC--DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.. ....+. ....|++++.|+.++++.+.+.+..
T Consensus 146 ~~~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 146 LVELKDRSWS---IVASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp TTTCCSSCEE---EEEEBGGGTBTHHHHHHHHHHHHHH
T ss_pred cccccCCceE---EEEccCCCCcCHHHHHHHHHHHHHh
Confidence 11 111111 1236888899999999999876653
No 105
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.66 E-value=5.8e-16 Score=130.78 Aligned_cols=162 Identities=19% Similarity=0.094 Sum_probs=91.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
.+|+|+|++|+|||||+|++++........ ...+.......... ++ ..+.++||||....... ..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~~ 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAHE--MENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------LQ 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCccccc--CCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------hh
Confidence 689999999999999999999765422211 12222222233333 33 46789999997643110 11
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
..++..+|++++|+|++++-+-.. ..++..+....+. ...|+++|+||+|.........+ ....+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~~~~~~~---------~~~~~~~~~ 139 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARSREVSLE---------EGRHLAGTL 139 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGGCCSCHH---------HHHHHHHHT
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhcccCCHH---------HHHHHHHHc
Confidence 112334699999999985322111 2333334333221 12499999999997633111111 133444545
Q ss_pred CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 177 DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 177 ~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+..++. .||+++.|+.++++.+...+..
T Consensus 140 ~~~~~~------~Sa~~~~~v~~l~~~l~~~i~~ 167 (169)
T 3q85_A 140 SCKHIE------TSAALHHNTRELFEGAVRQIRL 167 (169)
T ss_dssp TCEEEE------CBTTTTBSHHHHHHHHHHHHHH
T ss_pred CCcEEE------ecCccCCCHHHHHHHHHHHHHh
Confidence 554443 5778889999999998876653
No 106
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.66 E-value=3.6e-16 Score=138.68 Aligned_cols=162 Identities=18% Similarity=0.152 Sum_probs=100.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||++.+++........ +.+........... ++ ..+.||||+|.... ..
T Consensus 12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~--~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~-----------~~ 77 (216)
T 4dkx_A 12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQ--ATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF-----------RS 77 (216)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCC------------CEEEEEEC-SSCEEEEEEECCSCTTTC-----------GG
T ss_pred CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcC--CccceEEEEEEEEe-cceEEEEEEEECCCchhh-----------hh
Confidence 34799999999999999999998665422211 11111122222223 33 36789999996543 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....++.++|++++|+|++++-+-.. ..++..+....+..+ |++||.||+|+......+.++ ...+..
T Consensus 78 l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~--piilVgNK~Dl~~~r~V~~~e---------~~~~a~ 146 (216)
T 4dkx_A 78 LIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDV--IIMLVGNKTDLADKRQVSIEE---------GERKAK 146 (216)
T ss_dssp GHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSS--EEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCC--eEEEEeeccchHhcCcccHHH---------HhhHHH
Confidence 23345678899999999985433222 445566666666555 999999999976432122221 334445
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++ ..||+++.||++++..|...+..
T Consensus 147 ~~~~~~~------e~SAktg~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 147 ELNVMFI------ETSAKAGYNVKQLFRRVAAALPG 176 (216)
T ss_dssp HHTCEEE------EEBTTTTBSHHHHHHHHHHHC--
T ss_pred HhCCeeE------EEeCCCCcCHHHHHHHHHHHHHh
Confidence 5554443 36889999999999998766543
No 107
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.66 E-value=9e-17 Score=138.81 Aligned_cols=164 Identities=15% Similarity=0.071 Sum_probs=100.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+|+|++|+|||||+|++++........ |.......+.+ ++..+.++||||.......
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~-----t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~----------- 82 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVTTVP-----TVGVNLETLQY-KNISFEVWDLGGQTGVRPY----------- 82 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEEECS-----STTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCCcCC-----CCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------
Confidence 345899999999999999999998776532211 21122233444 6778999999997653221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++-+-.. ...++...+.. ....|+++|+||+|.... ....+.... +. ..
T Consensus 83 ~~~~~~~~d~ii~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~-----~~--~~ 151 (189)
T 2x77_A 83 WRCYFSDTDAVIYVVDSTDRDRMGV--AKHELYALLDEDELRKSLLLIFANKQDLPDA--ASEAEIAEQ-----LG--VS 151 (189)
T ss_dssp CSSSSTTCCEEEEEEETTCCTTHHH--HHHHHHHHHTCSTTTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhhcCCEEEEEEeCCCHHHHHH--HHHHHHHHHhhhhcCCCeEEEEEECCCCcCC--CCHHHHHHH-----hC--hh
Confidence 2334668899999999985543222 22333333321 113499999999998755 222221111 00 01
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.+..+.+. ....||+++.|+.++++.+.+.+...
T Consensus 152 ~~~~~~~~---~~~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 152 SIMNRTWT---IVKSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp GCCSSCEE---EEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred hccCCceE---EEEccCCCccCHHHHHHHHHHHHHhc
Confidence 11111111 12367888999999999998877654
No 108
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.66 E-value=2.7e-15 Score=143.20 Aligned_cols=169 Identities=15% Similarity=0.092 Sum_probs=107.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|.+|+|||||+|.|+|...... .....|.......... .+..+.++||||+.+.......... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~ 239 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIA--SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQA 239 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEE--CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccC--CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHH
Confidence 3457999999999999999999999874222 1223344444443444 5678999999998764322111111 111
Q ss_pred HhhhcCCceEEEEEEeCCCCC--CHH-HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRF--SQE-EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~--~~~-~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
+......+|++|+|+|++++. +.. ...++..+...++ ..|+++|+||+|.... ..++. +...+
T Consensus 240 ~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~--~~~~~---------~~~~~ 305 (357)
T 2e87_A 240 ILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE--ENIKR---------LEKFV 305 (357)
T ss_dssp HHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH--HHHHH---------HHHHH
T ss_pred HHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh--HHHHH---------HHHHH
Confidence 222334679999999987432 433 3556666666554 2499999999997754 22322 22233
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...+.+++. .||+++.|+++|++.+...+..
T Consensus 306 ~~~~~~~~~------iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 306 KEKGLNPIK------ISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp HHTTCCCEE------CBTTTTBTHHHHHHHHHHHHHH
T ss_pred HhcCCCeEE------EeCCCCcCHHHHHHHHHHHHHH
Confidence 334444443 6778899999999999877754
No 109
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.66 E-value=2e-16 Score=155.34 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=99.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
+.+|+|+|++|+|||||+|+|+|...... ...+++|.......+.+ ++..+.+|||||+.++.. ...........
T Consensus 224 ~~kV~ivG~~nvGKSSLln~L~~~~~a~v-~~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~~---~ve~~gi~~~~ 298 (462)
T 3geh_A 224 GLKVAIVGRPNVGKSSLLNAWSQSDRAIV-TDLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETSD---QVEKIGVERSR 298 (462)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHBSCC-SCCTTCCHHHHHHEEEE-TTEEEEECC-----------------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCCcccc-cCCCCeeEEEEEEEEEE-CCEEEEEEECCccccchh---HHHHHHHHHHh
Confidence 46899999999999999999998754222 11234444443334445 788999999999865321 11111122334
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
..+..+|++|+|+|++++++..+..++..+.. .|+++|+||+|.... .... .+.. +. ...
T Consensus 299 ~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~--~~~~-~~~~--------~~--~~~ 358 (462)
T 3geh_A 299 QAANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK--QLIT-SLEY--------PE--NIT 358 (462)
T ss_dssp CCCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG--GGST-TCCC--------CT--TCC
T ss_pred hhhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc--hhhH-HHHH--------hc--cCC
Confidence 45678999999999998888777665555432 399999999998755 2111 1110 00 112
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
.++ ..|++++.|+++|++.|.+.+...
T Consensus 359 ~~i------~iSAktg~Gi~eL~~~i~~~~~~~ 385 (462)
T 3geh_A 359 QIV------HTAAAQKQGIDSLETAILEIVQTG 385 (462)
T ss_dssp CEE------EEBTTTTBSHHHHHHHHHHHHTTS
T ss_pred cEE------EEECCCCCCHHHHHHHHHHHHhcc
Confidence 222 368889999999999999887754
No 110
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.66 E-value=3.8e-16 Score=138.86 Aligned_cols=163 Identities=18% Similarity=0.099 Sum_probs=98.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.|++........ ...+.......+.+ ++ ..+.||||||......
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSK--STIGVEFATRTLEI-EGKRIKAQIWDTAGQERYRA----------- 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCccchhh-----------
Confidence 35799999999999999999999876532211 22222222233333 44 4789999999654321
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.....+..+|++|+|+|++.+.+-.. ..++..+....... .|+++|+||+|.......... ....+..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~---------~~~~~~~ 146 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTE---------ESKTFAQ 146 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHH---------HHHHHHH
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHH---------HHHHHHH
Confidence 23345678899999999985433222 23444454443323 399999999997643111111 1233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
..+..++. .||+++.|+.+|++.+...+...
T Consensus 147 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i~~~ 177 (223)
T 3cpj_B 147 ENQLLFTE------TSALNSENVDKAFEELINTIYQK 177 (223)
T ss_dssp HTTCEEEE------CCCC-CCCHHHHHHHHHHHHTTC
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHHH
Confidence 44444443 56778899999999998776643
No 111
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.66 E-value=2.1e-16 Score=137.28 Aligned_cols=162 Identities=13% Similarity=0.072 Sum_probs=93.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+|+|++|+|||||+|.+++...... ..|.......+.. .+..+.++||||...... .
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~-----------~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIRP-----------L 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CT-----------T
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHHH-----------H
Confidence 4568999999999999999999997764321 1122233333444 677899999999754321 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++++|+|++++.+-.. ...++....... ...|+++|+||+|.... ....++... +. ..
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~-----~~--~~ 158 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQE--SADELQKMLQEDELRDAVLLVFANKQDMPNA--MPVSELTDK-----LG--LQ 158 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHH-----TT--GG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHH--HHHHHHHHhcccccCCCeEEEEEECCCCCCC--CCHHHHHHH-----hC--cc
Confidence 1223456799999999985432221 223333332211 12499999999998654 222221111 00 00
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+....+.+ ...||+++.|+++|++.+...+.
T Consensus 159 ~~~~~~~~~---~~~SA~~g~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 159 HLRSRTWYV---QATCATQGTGLYDGLDWLSHELS 190 (192)
T ss_dssp GCSSCCEEE---EECBTTTTBTHHHHHHHHHHHTT
T ss_pred cccCCceEE---EECcCCCcCCHHHHHHHHHHHHh
Confidence 011111111 24688889999999999876653
No 112
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=4e-16 Score=137.00 Aligned_cols=166 Identities=16% Similarity=0.171 Sum_probs=99.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|.+|+|||||+|++++....... .+.++... ...... ++ ..+.|+||||..... ..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~-~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~ 89 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVY--VPTVFENY-VADIEV-DGKQVELALWDTAGQEDYD-----------RL 89 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC---------CCEE-EEEEEE-TTEEEEEEEEECTTCTTCT-----------TT
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcC--CCcccceE-EEEEEE-CCEEEEEEEEECCCcHHHH-----------HH
Confidence 479999999999999999999987653221 11111111 112233 33 368899999976532 12
Q ss_pred HhhhcCCceEEEEEEeCCCCCC--HHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc----C-CchH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFS--QEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE----C-PKPL 169 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~--~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~----~-~~~l 169 (371)
....+..+|++++|+|++++.+ .....++..+....+ . .|+++|+||+|.... ....+.+... . ....
T Consensus 90 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~v~~~~~ 164 (207)
T 2fv8_A 90 RPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCP-N--VPIILVANKKDLRSD--EHVRTELARMKQEPVRTDDG 164 (207)
T ss_dssp GGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHST-T--CCEEEEEECGGGGGC--HHHHHHHHHTTCCCCCHHHH
T ss_pred HHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhhhcc--ccchhhhhhcccCCCCHHHH
Confidence 2345678899999999984322 222345555555432 2 399999999998755 2222222110 0 0112
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+....+. .++ ..||+++.|+++|++.|...+..
T Consensus 165 ~~~~~~~~~~~~~------~~SA~~g~gi~el~~~l~~~i~~ 200 (207)
T 2fv8_A 165 RAMAVRIQAYDYL------ECSAKTKEGVREVFETATRAALQ 200 (207)
T ss_dssp HHHHHHTTCSEEE------ECCTTTCTTHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCEEE------EeeCCCCCCHHHHHHHHHHHHHH
Confidence 333333333 333 35788899999999999876543
No 113
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=6.8e-16 Score=134.20 Aligned_cols=170 Identities=18% Similarity=0.140 Sum_probs=96.3
Q ss_pred CCCCCCCC-CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcc
Q 040649 9 DWKPTSSS-NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAE 85 (371)
Q Consensus 9 ~~~~~~~~-~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~ 85 (371)
+|.+.+.. .+..+|+|+|.+|+|||||+|.+++........ +...... ...+.. ++ ..+.++||||... .
T Consensus 17 ~~~~~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~--~t~~~~~-~~~~~~-~~~~~~~~l~Dt~G~~~-~-- 89 (196)
T 2atv_A 17 NLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYD--PTLESTY-RHQATI-DDEVVSMEILDTAGQED-T-- 89 (196)
T ss_dssp ----------CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCC--TTCCEEE-EEEEEE-TTEEEEEEEEECCCCCC-C--
T ss_pred ccchhccCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccC--CCCCceE-EEEEEE-CCEEEEEEEEECCCCCc-c--
Confidence 45444433 456899999999999999999999876532211 1111111 122223 33 4689999999765 1
Q ss_pred hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhccc
Q 040649 86 SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLE 164 (371)
Q Consensus 86 ~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~ 164 (371)
.. ... .+..+|++++|+|++++-+-.. ..++..+...... ...|+++|+||+|..........+
T Consensus 90 --~~---~~~----~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~----- 154 (196)
T 2atv_A 90 --IQ---REG----HMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHSRQVSTEE----- 154 (196)
T ss_dssp --HH---HHH----HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGGCCSCHHH-----
T ss_pred --cc---hhh----hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccccccCHHH-----
Confidence 11 112 2334599999999984332222 2334445443321 124999999999976431111111
Q ss_pred CCchHHHHHHhcCCceEeecCcchhhHhhHH-hHHHHHHHHHHHHhh
Q 040649 165 CPKPLKEILQLCDNRWVLFDNKTKYEAKRTE-QVQQLLSLVNAVNVK 210 (371)
Q Consensus 165 ~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~~ 210 (371)
...+....+..++. .|++++. |+.++++.+...+..
T Consensus 155 ----~~~~~~~~~~~~~~------~Sa~~g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 155 ----GEKLATELACAFYE------CSACTGEGNITEIFYELCREVRR 191 (196)
T ss_dssp ----HHHHHHHHTSEEEE------CCTTTCTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHhCCeEEE------ECCCcCCcCHHHHHHHHHHHHHh
Confidence 22333334444443 5677888 999999998866543
No 114
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.66 E-value=3.2e-16 Score=134.73 Aligned_cols=160 Identities=19% Similarity=0.140 Sum_probs=96.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+++|++|+|||||+|.+++...... ..|.......+.+ ++..+.++||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 4458999999999999999999998754211 1111122233444 577899999999643 1222
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
...++.++|++++|+|++++-+-.. ...++...+.. ....|+++|+||+|.... ...++.. ..+.
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~---------~~~~ 143 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEE--TGQELTELLEEEKLSCVPVLIFANKQDLLTA--APASEIA---------EGLN 143 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHH--HHHHHHHHTTCGGGTTCCEEEEEECTTSTTC--CCHHHHH---------HHTT
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHH--HHHHHHHHHhChhhcCCCEEEEEECcCcccC--CCHHHHH---------HHhC
Confidence 3345567899999999985433221 22233333221 122499999999998755 2222111 1111
Q ss_pred h--cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 L--CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~--~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
. ...+.+. ....||+++.|+.++++.+...+.
T Consensus 144 ~~~~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (181)
T 1fzq_A 144 LHTIRDRVWQ---IQSCSALTGEGVQDGMNWVCKNVN 177 (181)
T ss_dssp GGGCCSSCEE---EEECCTTTCTTHHHHHHHHHHTC-
T ss_pred chhccCCceE---EEEccCCCCCCHHHHHHHHHHHHH
Confidence 0 1111111 123688899999999999876553
No 115
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.65 E-value=1.2e-15 Score=134.95 Aligned_cols=171 Identities=12% Similarity=0.061 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|.+++........ +.+.... ...... .....+.|+||||.... ..
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 90 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYV--PTVFENY-TACLETEEQRVELSLWDTSGSPYY-----------DN 90 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCC--CCSEEEE-EEEEEC--CEEEEEEEEECCSGGG-----------TT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcC--CeeeeeE-EEEEEECCEEEEEEEEECCCCHhH-----------HH
Confidence 356899999999999999999999876532211 1111111 112222 12347889999996432 22
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l 169 (371)
....++.++|++|+|+|++++-+-.. ..++..+..... . .|+++|+||+|+..+. ........ .......
T Consensus 91 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 166 (214)
T 3q3j_B 91 VRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCP-S--TRVLLIGCKTDLRTDL-STLMELSHQKQAPISYEQG 166 (214)
T ss_dssp TGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCT-T--SEEEEEEECGGGGGCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEChhhccch-hhhhhhcccccCccCHHHH
Confidence 23456778999999999985433332 345555655533 2 3999999999986431 01110000 0011123
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHh-HHHHHHHHHHHHhhc
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQ-VQQLLSLVNAVNVKN 211 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~~~~~ 211 (371)
..+....+. .++. .||+++.| +.+|++.+...+...
T Consensus 167 ~~~~~~~~~~~~~e------~SA~~g~g~v~~lf~~l~~~~~~~ 204 (214)
T 3q3j_B 167 CAIAKQLGAEIYLE------GSAFTSEKSIHSIFRTASMLCLNK 204 (214)
T ss_dssp HHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCCEEEE------eccCCCcccHHHHHHHHHHHHhcc
Confidence 445555554 4443 67788898 999999998776543
No 116
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=2.1e-16 Score=154.90 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=99.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|.|+|...... ....++|.........+ .+..+.||||||+...... ....+......
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~---~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGDEP---FLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC---------C---HHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcchh---HHHHHHHHHHH
Confidence 5899999999999999999998765221 22345666655555555 6788999999998643211 33445555555
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
++..+|++|+|+|+..+++..+..+...+.. ...|+++|+||+|..... ... .. +. ..+.
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~~-~~~--------~~----~~-~lg~- 138 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEMR-ANI--------YD----FY-SLGF- 138 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC------CC--------CS----SG-GGSS-
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccch-hhH--------HH----HH-HcCC-
Confidence 6677899999999998888887766665542 224999999999976431 100 01 11 1121
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
......||+++.|+.+|++.+...++.
T Consensus 139 ----~~~~~iSA~~g~gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 139 ----GEPYPISGTHGLGLGDLLDAVAEHFKN 165 (436)
T ss_dssp ----CCCEECBTTTTBTHHHHHHHHHHTGGG
T ss_pred ----CCeEEEeCcCCCChHHHHHHHHHhcCc
Confidence 112346888999999999999988764
No 117
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.65 E-value=1.3e-15 Score=149.32 Aligned_cols=178 Identities=18% Similarity=0.238 Sum_probs=105.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHH-HH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIA-KC 96 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~-~~ 96 (371)
...+|+|+|++|+|||||+|+|+|...... ....++|.......+.+ ++..+.+|||||+.............+. ..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v-~~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALV-SPIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEE-CCCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCccccc-CCCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 457999999999999999999999875222 11234444444444555 7888999999998532111000000000 00
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...++..+|++++|+|+..+.+..+..+...+.. .+ .|+++|+||+|.......+.+++... +...+..+
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~-~~----~~~ilv~NK~Dl~~~~~~~~~~~~~~-----~~~~~~~~ 326 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMER-RG----RASVVVFNKWDLVVHREKRYDEFTKL-----FREKLYFI 326 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHH-TT----CEEEEEEECGGGSTTGGGCHHHHHHH-----HHHHCGGG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHH-cC----CCEEEEEECccCCCchhhHHHHHHHH-----HHHHhccC
Confidence 0112334699999999987788777655555543 22 49999999999876532223333221 22222222
Q ss_pred C-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 177 D-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 177 ~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
+ .+++ ..||+++.|+.+|++.+...+.....
T Consensus 327 ~~~~~~------~~SA~~g~gv~~l~~~i~~~~~~~~~ 358 (439)
T 1mky_A 327 DYSPLI------FTSADKGWNIDRMIDAMNLAYASYTT 358 (439)
T ss_dssp TTSCEE------ECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred CCCcEE------EEECCCCCCHHHHHHHHHHHHHhhcc
Confidence 2 2222 36888999999999999988877544
No 118
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.64 E-value=9.9e-17 Score=142.31 Aligned_cols=165 Identities=13% Similarity=0.024 Sum_probs=99.1
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.....+|+|+|.+|+|||||+|.+++...........+.+.......... .+..+.||||||.......
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~---------- 80 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGL---------- 80 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCC----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHH----------
Confidence 34558999999999999999999543322111111222332222222111 3357899999996543211
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+.++|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|..... ... ....+..
T Consensus 81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~p~ilv~nK~Dl~~~~--~~~---------~~~~~~~ 145 (221)
T 3gj0_A 81 -RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE-N--IPIVLCGNKVDIKDRK--VKA---------KSIVFHR 145 (221)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST-T--CCEEEEEECTTSSSCS--SCG---------GGCCHHH
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECCcccccc--ccH---------HHHHHHH
Confidence 1223457899999999985433222 234455555433 2 3999999999986541 111 1122333
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
..+..++. .|++++.|+.+++..+...+....
T Consensus 146 ~~~~~~~~------~Sa~~~~gi~~l~~~l~~~l~~~~ 177 (221)
T 3gj0_A 146 KKNLQYYD------ISAKSNYNFEKPFLWLARKLIGDP 177 (221)
T ss_dssp HHTCEEEE------CBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred HcCCEEEE------EeCCCCCCHHHHHHHHHHHHHhCc
Confidence 34444443 578889999999999998776543
No 119
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.64 E-value=2e-17 Score=144.41 Aligned_cols=162 Identities=19% Similarity=0.145 Sum_probs=92.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||+|+|++....... ....+.......+.+ ++ ..+.|+||||.......
T Consensus 32 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~---------- 98 (199)
T 3l0i_B 32 YLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRTI---------- 98 (199)
T ss_dssp EEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCCC----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHHH----------
Confidence 4579999999999999999999987653221 112222333333444 44 46899999996543221
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....+..+|++|+|+|++++.+-.. ..++..+...... ..|+++|+||+|........ ......+..
T Consensus 99 -~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~~~v~---------~~~~~~~~~ 166 (199)
T 3l0i_B 99 -TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTKKVVD---------YTTAKEFAD 166 (199)
T ss_dssp -SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--CCCC---------SCC-CHHHH
T ss_pred -HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCccccCC---------HHHHHHHHH
Confidence 2334667899999999985433222 2233333322222 24999999999976441110 111233444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..++ ..|++++.|+.+|++.+.+.+..
T Consensus 167 ~~~~~~~------~vSA~~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 167 SLGIPFL------ETSAKNATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp TTTCCBC------CCCC---HHHHHHHHHHTTTTTT
T ss_pred HcCCeEE------EEECCCCCCHHHHHHHHHHHHHH
Confidence 4443333 36788899999999998765543
No 120
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.64 E-value=1.4e-15 Score=150.45 Aligned_cols=162 Identities=19% Similarity=0.243 Sum_probs=107.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc---c--cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF---K--ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~---~--~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+..+|+++|++++|||||+|+|+|.... + ......++|....+..+.+ ++..+.+|||||+.+
T Consensus 18 ~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~----------- 85 (482)
T 1wb1_A 18 KNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD----------- 85 (482)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH-----------
T ss_pred CCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH-----------
Confidence 3579999999999999999999987611 0 0111234555555555555 778999999999522
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+...+...+..+|++|+|+|++.+........+..+.. .+ .|.++|+||+|.... ..++..... +..+
T Consensus 86 ~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----ip~IvviNK~Dl~~~--~~~~~~~~~-----l~~~ 153 (482)
T 1wb1_A 86 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDH-FN----IPIIVVITKSDNAGT--EEIKRTEMI-----MKSI 153 (482)
T ss_dssp HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCBCEEEECTTSSCH--HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHH-cC----CCEEEEEECCCcccc--hhHHHHHHH-----HHHH
Confidence 33334445677899999999997777777777766654 33 277999999998753 334433332 4555
Q ss_pred HHhc----CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLC----DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~----~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+... ..+++ ..||+++.|+.+|++.|...++
T Consensus 154 l~~~~~~~~~~ii------~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 154 LQSTHNLKNSSII------PISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp HHHSSSGGGCCEE------ECCTTTCTTHHHHHHHHHHHHH
T ss_pred HhhhcccccceEE------EEECcCCCCHHHHHHHHHHhhc
Confidence 5443 22333 3678889999999999998765
No 121
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.63 E-value=1.6e-15 Score=130.43 Aligned_cols=167 Identities=14% Similarity=0.083 Sum_probs=98.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
....+|+|+|++|+|||||+|.+++........ .|..... ..+.. .....+.++||||.... .
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~ 69 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYV----PTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------D 69 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCC----CCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------T
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCC----CccceeEEEEEEECCEEEEEEEEECCCChhh-----------h
Confidence 345899999999999999999999876432211 1111111 12222 12347899999996432 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCch
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPKP 168 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~~ 168 (371)
......+..+|++++|+|++++.+-.. ..++..+....+ . .|+++|+||+|...+. ....++... .....
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~ 145 (184)
T 1m7b_A 70 NVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQ 145 (184)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHH
T ss_pred hhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHH
Confidence 123345678999999999985433222 234455555433 2 4999999999976431 112211110 00112
Q ss_pred HHHHHHhcC-CceEeecCcchhhHh-hHHhHHHHHHHHHHHH
Q 040649 169 LKEILQLCD-NRWVLFDNKTKYEAK-RTEQVQQLLSLVNAVN 208 (371)
Q Consensus 169 l~~~~~~~~-~r~~~f~~~~~~sa~-~~~~i~~Ll~~i~~~~ 208 (371)
...+....+ ..++. .||+ ++.|+.++++.+...+
T Consensus 146 ~~~~~~~~~~~~~~e------~Sa~~~~~gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 146 GANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 181 (184)
T ss_dssp HHHHHHHHTCSEEEE------CBTTTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEE------eeecCCCcCHHHHHHHHHHHH
Confidence 334444444 23333 5776 5799999999987654
No 122
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.63 E-value=2.6e-16 Score=148.85 Aligned_cols=175 Identities=17% Similarity=0.111 Sum_probs=106.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|.+|||||||+|+|++...... ....+|..+....+.+.++..+.|+||||+.+.......+...+...+.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~- 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIE- 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH-
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHH-
Confidence 3689999999999999999998764221 2233444444444555334789999999975321111112333444333
Q ss_pred hcCCceEEEEEEeCCC---CCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 100 AKDGIHAVLLVFSVRS---RFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~---~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.+|++|+|+|+++ +-+..+ ..++..+..........|+++|+||+|.... .. .+..+...
T Consensus 236 ---~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~e-----------~~~~l~~~ 299 (342)
T 1lnz_A 236 ---RTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--AE-----------NLEAFKEK 299 (342)
T ss_dssp ---HCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--HH-----------HHHHHHHH
T ss_pred ---hccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--HH-----------HHHHHHHH
Confidence 3599999999974 222222 2344445443221134599999999997643 11 12233333
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC-CCCC
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG-QPYT 217 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~-~~y~ 217 (371)
+... ......||+++.++++|+..|...+..... ..|.
T Consensus 300 l~~~----~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~~~~y~ 338 (342)
T 1lnz_A 300 LTDD----YPVFPISAVTREGLRELLFEVANQLENTPEFPLYD 338 (342)
T ss_dssp CCSC----CCBCCCSSCCSSTTHHHHHHHHHHHTSCCCCCSSC
T ss_pred hhcC----CCEEEEECCCCcCHHHHHHHHHHHHhhCccccCCC
Confidence 3321 112346778889999999999999887655 3444
No 123
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.63 E-value=4.9e-16 Score=135.66 Aligned_cols=168 Identities=14% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
+..+|+++|++|+|||||+|.+++....... .|.......+.+ ++..+.++||||..... ...
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~ 86 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV-----PTLHPTSEELTI-AGMTFTTFDLGGHIQAR-----------RVW 86 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----C-----------CGG
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCccC-----CCCCceeEEEEE-CCEEEEEEECCCcHhhH-----------HHH
Confidence 4579999999999999999999987642211 111111233444 66889999999965421 122
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHH--H
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKE--I 172 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~--~ 172 (371)
..++.++|++++|+|++++-+-.. ...++...... ....|+++|+||+|..... ...+.+++.......-.. .
T Consensus 87 ~~~~~~~d~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (198)
T 1f6b_A 87 KNYLPAINGIVFLVDCADHERLLE--SKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVS 164 (198)
T ss_dssp GGGGGGCSEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCCHHHHHHHHTCTTTCCCSSCCC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHH--HHHHHHHHHhCcccCCCcEEEEEECCCccccCCHHHHHHHhCcccccccccccc
Confidence 345567899999999985432221 22233332221 1224999999999986431 112222221100000000 0
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
+.....+.+. ....||+++.|++++++.+.+.
T Consensus 165 ~~~~~~~~~~---~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 165 LKELNARPLE---VFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TTTCCSCCEE---EEECBTTTTBSHHHHHHHHHTT
T ss_pred cccccCceEE---EEEEECCCCCCHHHHHHHHHHh
Confidence 0000001111 1346888999999999988643
No 124
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.63 E-value=1.4e-15 Score=131.79 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=94.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
.+..+|+++|++|+|||||+|.+++...... ..|.......+.+ ++..+.++||||..... ..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 83 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLATL-----QPTWHPTSEELAI-GNIKFTTFDLGGHIQAR-----------RL 83 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHSCCCCC-----CCCCSCEEEEEEE-TTEEEEEEECCCSGGGT-----------TS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCCcc-----ccCCCCCeEEEEE-CCEEEEEEECCCCHHHH-----------HH
Confidence 3457999999999999999999998764221 1122222334445 67889999999975421 12
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCC--CCCCeEEEEEeCCCCCCCc-hhhHHHHhcccCCchHHHHH
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGK--KIFDYMIVVFTGGDDLEDN-EKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~--~~~~~~ilv~tk~D~~~~~-~~~l~~~l~~~~~~~l~~~~ 173 (371)
...++..+|++++|+|++++-+-.. ...++...... ....|+++|+||+|..... ...+.+++.... ..-+..+
T Consensus 84 ~~~~~~~~d~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~ 160 (190)
T 1m2o_B 84 WKDYFPEVNGIVFLVDAADPERFDE--ARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRI 160 (190)
T ss_dssp GGGGCTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCHHHHHHHTTCSS-CCC---C
T ss_pred HHHHHhcCCEEEEEEECCChHHHHH--HHHHHHHHHcchhhcCCCEEEEEECCCCcCCCCHHHHHHHhCCcc-ccccccc
Confidence 2345678899999999985433222 12223322211 1224999999999987531 112222221100 0000000
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.....+. ....||+++.|+.++++.+.+
T Consensus 161 --~~~~~~~---~~~~Sa~~g~gi~~l~~~l~~ 188 (190)
T 1m2o_B 161 --EGQRPVE---VFMCSVVMRNGYLEAFQWLSQ 188 (190)
T ss_dssp --CSSCCEE---EEECBTTTTBSHHHHHHHHHT
T ss_pred --cccceEE---EEEeECCcCCCHHHHHHHHHh
Confidence 0001111 124688899999999998764
No 125
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.63 E-value=1.2e-15 Score=131.56 Aligned_cols=161 Identities=19% Similarity=0.115 Sum_probs=96.1
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHH
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKE 92 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~e 92 (371)
+..+..+|+|+|.+|+|||||+|.+++...... ..+ |.......+.+ ++. .+.++||||....
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~-~~~---t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~---------- 80 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQE-ESP---EGGRFKKEIVV-DGQSYLLLIRDEGGPPEL---------- 80 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCC-CCT---TCEEEEEEEEE-TTEEEEEEEEECSSSCCH----------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCC-cCC---CcceEEEEEEE-CCEEEEEEEEECCCChhh----------
Confidence 344568999999999999999999987765322 111 11111123333 443 5678999997541
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
. .+..+|++++|+|++++.+-.. ..++..+..... ....|+++|+||+|........+ .......
T Consensus 81 -~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~~~~~v-------~~~~~~~ 146 (184)
T 3ihw_A 81 -Q-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAISAANPRVI-------DDSRARK 146 (184)
T ss_dssp -H-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCBTTBCCCS-------CHHHHHH
T ss_pred -h-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccccccccccc-------CHHHHHH
Confidence 0 2234699999999985433222 233333433211 12249999999999742210111 0011334
Q ss_pred HHHhcC-CceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 172 ILQLCD-NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 172 ~~~~~~-~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+....+ ..++. .||+++.|+.++++.+...+..
T Consensus 147 ~~~~~~~~~~~e------~Sa~~~~gv~~lf~~l~~~i~~ 180 (184)
T 3ihw_A 147 LSTDLKRCTYYE------TCATYGLNVERVFQDVAQKVVA 180 (184)
T ss_dssp HHHHTTTCEEEE------EBTTTTBTHHHHHHHHHHHHHH
T ss_pred HHHHcCCCeEEE------ecCCCCCCHHHHHHHHHHHHHH
Confidence 455444 33333 6778889999999998876543
No 126
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.63 E-value=6.7e-16 Score=132.05 Aligned_cols=165 Identities=18% Similarity=0.077 Sum_probs=93.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|++|+|||||+|.+++...... . ..|..... ..... .....+.++||||..... .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~-~---~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTD-Y---VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCC-C---CCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 458999999999999999999997664221 1 11111111 11112 123356799999976432 2
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH---hcccCCchHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY---LGLECPKPLK 170 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~---l~~~~~~~l~ 170 (371)
.....+.++|++++|+|++++.+-... .++..+....+ . .|+++|+||+|.... ...... ..........
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~~~v~~~~~~ 146 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP-G--VPIVLVGTKLDLRDD--KQFFIDHPGAVPITTVQGE 146 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHHC--CCCCCHHHHH
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEechhhhcC--cccccccccCCCCCHHHHH
Confidence 233456788999999999854332222 35555555433 2 499999999997654 211000 0000001123
Q ss_pred HHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 171 EILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 171 ~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+....+. .++. .||+++.|+.+|++.+.+.+
T Consensus 147 ~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~i 179 (182)
T 3bwd_D 147 ELKKLIGAPAYIE------CSSKSQENVKGVFDAAIRVV 179 (182)
T ss_dssp HHHHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEE------EECCCCCCHHHHHHHHHHHH
Confidence 34444443 3333 67888999999999987655
No 127
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.63 E-value=2.3e-15 Score=132.32 Aligned_cols=168 Identities=14% Similarity=0.083 Sum_probs=98.9
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEee-CCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLK-DGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
.....+|+|+|.+|+|||||+|.+++...... . ..|..... ..+.+. ....+.||||||....
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~-~---~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~----------- 89 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN-Y---VPTVFENYTASFEIDTQRIELSLWDTSGSPYY----------- 89 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSS-C---CCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-----------
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCC-c---CCccceeEEEEEEECCEEEEEEEEeCCCcHhh-----------
Confidence 34567999999999999999999998765322 1 11111111 122221 2347899999996432
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc----cCCc
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL----ECPK 167 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~----~~~~ 167 (371)
.......+..+|++|+|+|++++.+-.. ..++..+....+ . .|+++|+||+|..... ....++... ....
T Consensus 90 ~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~-~--~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~ 165 (205)
T 1gwn_A 90 DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCP-N--TKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYD 165 (205)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHH
T ss_pred hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-C--CCEEEEEechhhccch-hhhhhhcccccCCCCHH
Confidence 1123345678899999999985433222 234455555433 2 4999999999976431 112211110 0011
Q ss_pred hHHHHHHhcC-CceEeecCcchhhHh-hHHhHHHHHHHHHHHH
Q 040649 168 PLKEILQLCD-NRWVLFDNKTKYEAK-RTEQVQQLLSLVNAVN 208 (371)
Q Consensus 168 ~l~~~~~~~~-~r~~~f~~~~~~sa~-~~~~i~~Ll~~i~~~~ 208 (371)
....+....+ ..++. .||+ ++.|+.++++.+.+.+
T Consensus 166 ~~~~~~~~~~~~~~~e------~SAk~~~~gv~~lf~~l~~~~ 202 (205)
T 1gwn_A 166 QGANMAKQIGAATYIE------CSALQSENSVRDIFHVATLAC 202 (205)
T ss_dssp HHHHHHHHHTCSEEEE------CCTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEE------eeeccCCcCHHHHHHHHHHHH
Confidence 2334444444 23333 5776 5789999999987654
No 128
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.63 E-value=6.2e-16 Score=133.17 Aligned_cols=171 Identities=16% Similarity=0.129 Sum_probs=94.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHH----HHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEY----VSKEIAK 95 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~----~~~ei~~ 95 (371)
.+|+|+|++|+|||||+|++++...... . .+++|..... +.+ . .+.++||||+.+....... ....+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~-~-~~~~t~~~~~--~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRG-K-RPGVTRKIIE--IEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSS-S-STTCTTSCEE--EEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccC-C-CCCccceeEE--Eec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 5799999999999999999998874322 1 2233332222 222 2 6889999997654332211 1222222
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHH---------HHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCC
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAV---------HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l---------~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~ 166 (371)
++......++++++|+|.. .+......+. ..+....... .|+++|+||+|..... ...
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~----~~~------ 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKNV----QEV------ 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSCH----HHH------
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCcH----HHH------
Confidence 2222245567888888875 2211101111 1111111122 3999999999987652 111
Q ss_pred chHHHHHHhcCCceEee-cCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 167 KPLKEILQLCDNRWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
...+....+..+..+ ......||+++.|+.++++.+...+....
T Consensus 142 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 142 --INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp --HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred --HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 223333333321000 01123678889999999999988776543
No 129
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.63 E-value=7.4e-16 Score=152.01 Aligned_cols=159 Identities=21% Similarity=0.291 Sum_probs=103.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCC-CCCcchHHH-HHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLF-DSSAESEYV-SKEIAKCI 97 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~-~~~~~~~~~-~~ei~~~~ 97 (371)
.+|+|+|.+|+|||||+|+|+|...... ...+++|.......+.+ ++..+.||||||+. .+...-+.. ......
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~v-s~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-- 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIV-TDIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ-- 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCC-CCSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH--
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCcc-CCCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH--
Confidence 6899999999999999999998764211 12234455444445555 78899999999987 542111100 011112
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+..+|++|+|+|++++.+..+..+++.+ . . .|+++|+||+|.... ...++ +..++. .+
T Consensus 320 --~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~--~~~~~---------~~~~~~-~~ 378 (482)
T 1xzp_A 320 --EIEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK--INEEE---------IKNKLG-TD 378 (482)
T ss_dssp --HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC--CCHHH---------HHHHHT-CS
T ss_pred --HhhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc--cCHHH---------HHHHhc-CC
Confidence 23456999999999877777665554433 2 2 399999999998643 22221 222221 11
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
.+++ ..||+++.|+++|++.|...+.
T Consensus 379 ~~~i------~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 379 RHMV------KISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp TTEE------EEEGGGTCCHHHHHHHHHHHTH
T ss_pred CcEE------EEECCCCCCHHHHHHHHHHHHh
Confidence 2333 3688899999999999987644
No 130
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.62 E-value=1.9e-16 Score=153.65 Aligned_cols=167 Identities=18% Similarity=0.146 Sum_probs=106.3
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
.....+|+|+|++|+|||||+|+|++....... ...++|.........+.....+.+|||||+.+......... .
T Consensus 31 ~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~----~ 105 (423)
T 3qq5_A 31 AGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRV----E 105 (423)
T ss_dssp -CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCH----H
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHH----H
Confidence 345689999999999999999999988753221 23445555555556652333899999999987543211111 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
.....+..+|++|+|+|+ .....+..++..+... . .|+++|+||+|......... ...+...
T Consensus 106 ~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~---~--~piIvV~NK~Dl~~~~~~~~-----------~~~l~~~ 167 (423)
T 3qq5_A 106 KARRVFYRADCGILVTDS--APTPYEDDVVNLFKEM---E--IPFVVVVNKIDVLGEKAEEL-----------KGLYESR 167 (423)
T ss_dssp HHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHT---T--CCEEEECCCCTTTTCCCTHH-----------HHHSSCC
T ss_pred HHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhc---C--CCEEEEEeCcCCCCccHHHH-----------HHHHHHH
Confidence 123345678999999998 4667777777777765 2 39999999999876522211 1222222
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
++.+++ ..||+++.++.+|++.+...+...
T Consensus 168 ~g~~v~------~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 168 YEAKVL------LVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp TTCCCC------CCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred cCCCEE------EEECCCCCCHHHHHHHHHHhhhhh
Confidence 233333 367788899999999999988654
No 131
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.61 E-value=6.6e-15 Score=127.18 Aligned_cols=161 Identities=20% Similarity=0.099 Sum_probs=93.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEE-EeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEM-KTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
....+|+|+|.+|+|||||+|.+++...... . ..|....+ ..... ++ ..+.|+||||...... +
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~-~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~--------~ 85 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKRFISE-Y---DPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRN--------C 85 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSSCCSC-C---CTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCC--------T
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCCCCcc-c---CCCccceeeEEEEE-CCEEEEEEEEECCCCCcchh--------H
Confidence 3458999999999999999999998764221 1 11211111 12222 33 3678999999754321 1
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCC-CCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHH
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGK-KIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~ 171 (371)
...+..+|++++|+|++++-+-.. ..++..+...... ....|+++|+||+|.........+ ....
T Consensus 86 ----~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~---------~~~~ 152 (187)
T 3c5c_A 86 ----ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKA---------EGVA 152 (187)
T ss_dssp ----HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHH---------HHHH
T ss_pred ----HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHH---------HHHH
Confidence 123456799999999984322222 2234444443210 012399999999997533111111 1233
Q ss_pred HHHhcCCceEeecCcchhhH-hhHHhHHHHHHHHHHHHh
Q 040649 172 ILQLCDNRWVLFDNKTKYEA-KRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 172 ~~~~~~~r~~~f~~~~~~sa-~~~~~i~~Ll~~i~~~~~ 209 (371)
+....+..++. .|| +++.|+.++++.+...+.
T Consensus 153 ~~~~~~~~~~e------~Sa~~~g~gv~~lf~~l~~~i~ 185 (187)
T 3c5c_A 153 LAGRFGCLFFE------VSACLDFEHVQHVFHEAVREAR 185 (187)
T ss_dssp HHHHHTCEEEE------CCSSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcEEE------EeecCccccHHHHHHHHHHHHh
Confidence 44444544443 566 678999999999876654
No 132
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.61 E-value=1.3e-15 Score=141.28 Aligned_cols=173 Identities=13% Similarity=0.118 Sum_probs=95.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC---CCc-----------------------ccee--------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAG---SSA-----------------------ITKT-------------- 57 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~---~~~-----------------------~t~~-------------- 57 (371)
..++|+|+|.+|+|||||+|+|+|....+.... ..+ .|..
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999886422111 001 0000
Q ss_pred ---------EEEEeEEeeCCcEEEEEeCCCCCCCCc--chHHHHHHHHHHHhhhcCCceEEE-EEEeCCCCCCHHHHHHH
Q 040649 58 ---------CEMKTTVLKDGQVVNVIDTPGLFDSSA--ESEYVSKEIAKCIGMAKDGIHAVL-LVFSVRSRFSQEEEAAV 125 (371)
Q Consensus 58 ---------~~~~~~~~~~~~~i~liDTPG~~~~~~--~~~~~~~ei~~~~~~~~~~~d~vl-~v~d~~~~~~~~~~~~l 125 (371)
........+....+.||||||+..... ........+...+..++..++.++ +|+|++.+++..+. +
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~--~ 182 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--L 182 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH--H
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH--H
Confidence 000001111246899999999986421 011111223333334444556554 79999866665543 2
Q ss_pred HHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 126 HRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 126 ~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+...... ..|+++|+||+|..... ....+.+.. .+..+...+++ ....||+++.|+.+|++.+.
T Consensus 183 ~~~~~~~~~--~~~~i~V~NK~Dl~~~~-~~~~~~~~~--------~~~~~~~~~~~---v~~~SA~~~~gi~~l~~~l~ 248 (299)
T 2aka_B 183 KIAKEVDPQ--GQRTIGVITKLDLMDEG-TDARDVLEN--------KLLPLRRGYIG---VVNRSQKDIDGKKDITAALA 248 (299)
T ss_dssp HHHHHHCTT--CSSEEEEEECGGGSCTT-CCCHHHHTT--------CSSCCTTCEEE---CCCCCCBCTTSCBCHHHHHH
T ss_pred HHHHHhCCC--CCeEEEEEEccccCCCC-chHHHHHhC--------CcCcCCCCcEE---EECCChhhccccccHHHHHH
Confidence 223332222 24999999999987542 111222211 00011111222 23468888999999998887
Q ss_pred H
Q 040649 206 A 206 (371)
Q Consensus 206 ~ 206 (371)
.
T Consensus 249 ~ 249 (299)
T 2aka_B 249 A 249 (299)
T ss_dssp H
T ss_pred H
Confidence 5
No 133
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.61 E-value=2.8e-15 Score=131.90 Aligned_cols=168 Identities=17% Similarity=0.106 Sum_probs=101.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+|+|.+|+|||||++.+++...........+.. . ...+.. ++ ..+.|+||||......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~--~-~~~~~~-~~~~~~~~i~Dt~G~~~~~~----------- 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN--F-SANVAV-DGQIVNLGLWDTAGQEDYSR----------- 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC--E-EEEEEC-SSCEEEEEEECCCCCCCCCC-----------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee--E-EEEEEE-CCEEEEEEEEECCCcHHHHH-----------
Confidence 45899999999999999999999766422211111111 1 112223 33 4789999999865321
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh-cccCCchHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL-GLECPKPLKEI 172 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l-~~~~~~~l~~~ 172 (371)
....++..+|++|+|+|++++.+-.. ..++..+....+ . .|+++|+||+|.... ....... ..........+
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~~v~~~~~~~~ 147 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP-N--VPIVLVGTKLDLRDD--KGYLADHTNVITSTQGEEL 147 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT-T--CCEEEEEECHHHHTC--HHHHHTCSSCCCHHHHHHH
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeCHHhhhC--ccccccccCCCCHHHHHHH
Confidence 12345678899999999985432222 234555555433 2 499999999997654 2110000 00001113344
Q ss_pred HHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 173 LQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 173 ~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
....+. .++. .||+++.|+.++++.+...+...
T Consensus 148 ~~~~~~~~~~~------~Sa~~g~gi~~l~~~l~~~~~~~ 181 (212)
T 2j0v_A 148 RKQIGAAAYIE------CSSKTQQNVKAVFDTAIKVVLQP 181 (212)
T ss_dssp HHHHTCSEEEE------CCTTTCTTHHHHHHHHHHHHHCC
T ss_pred HHHcCCceEEE------ccCCCCCCHHHHHHHHHHHHhhh
Confidence 444443 3433 67788899999999998777654
No 134
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.61 E-value=1.4e-15 Score=129.68 Aligned_cols=156 Identities=19% Similarity=0.101 Sum_probs=92.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCC--cEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDG--QVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
+..+|+|+|.+|+|||||+|.+++..... ..+ .+.. .....+.. ++ ..+.++||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~-~~~~~~~~-~~~~~~l~i~Dt~G~~~------------~- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESE-QYKKEMLV-DGQTHLVLIREEAGAPD------------A- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSS-EEEEEEEE-TTEEEEEEEEECSSSCC------------H-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-Ccce-eEEEEEEE-CCEEEEEEEEECCCCch------------h-
Confidence 45899999999999999999999876532 111 1111 11222333 33 3678999999653 1
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCC-CCCeEEEEEeCCCCCCCc--hhhHHHHhcccCCchHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKK-IFDYMIVVFTGGDDLEDN--EKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~~~~--~~~l~~~l~~~~~~~l~~ 171 (371)
.++.++|++++|+|++++.+-.. ..++.++....... ...|+++|+||+|..... ....+ ....
T Consensus 68 ---~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~---------~~~~ 135 (178)
T 2iwr_A 68 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA---------RARA 135 (178)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHH---------HHHH
T ss_pred ---HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHH---------HHHH
Confidence 12334699999999985433222 22333454443211 124999999999974211 01111 1233
Q ss_pred HHHhc-CCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 172 ILQLC-DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 172 ~~~~~-~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+.... +.+++ ..||+++.|+.++++.+...+.
T Consensus 136 ~~~~~~~~~~~------~~Sa~~~~~i~~lf~~l~~~~~ 168 (178)
T 2iwr_A 136 LXADMKRCSYY------ETXATYGLNVDRVFQEVAQKVV 168 (178)
T ss_dssp HHHHHSSEEEE------EEBTTTTBTHHHHHHHHHHHHH
T ss_pred HHHhhcCCeEE------EEeccccCCHHHHHHHHHHHHH
Confidence 33333 22333 3677888999999998876543
No 135
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.61 E-value=1.2e-15 Score=151.95 Aligned_cols=169 Identities=14% Similarity=0.098 Sum_probs=101.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.|++.... . ...|.......+.+ .+..+.|+||||.... ....
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQDKI-----------RPLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-C----CCCCSSEEEEEEES-SSCEEEEEEECCCGGG-----------SGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccceeEEEEEe-CCEEEEEEECCCcHHH-----------HHHH
Confidence 4579999999999999999999987742 2 12244444445555 7789999999996542 1223
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC--CCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK--IFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~--~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++|+|+|++++.+-.. ...++..++... ...|+++|+||+|.... ....+... .+..
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~--~~~~~~~~---------~~~~ 450 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDE--ARQELHRIINDREMRDAIILIFANKQDLPDA--MKPHEIQE---------KLGL 450 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHH--HHHHHHHHHTSGGGTTCEEEEEEECCSSSSC--CCHHHHHH---------HTTC
T ss_pred HHHhccCCEEEEEEECcchhHHHH--HHHHHHHHhhhhhcCCCcEEEEEECCCCCcC--CCHHHHHH---------Hhch
Confidence 456778999999999985432222 222333332211 12499999999998654 22222111 1110
Q ss_pred --cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCCCCCChH
Q 040649 176 --CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGGQPYTNE 219 (371)
Q Consensus 176 --~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~~~y~~~ 219 (371)
...+.+. ....||+++.|+.+|++.|...+......+.+.+
T Consensus 451 ~~~~~~~~~---~~~~SA~~g~gi~~l~~~l~~~~~~~~~~~~~~~ 493 (497)
T 3lvq_E 451 TRIRDRNWY---VQPSCATSGDGLYEGLTWLTSNYKSKLAAALEHH 493 (497)
T ss_dssp TTCCSSCEE---EEECBTTTTBTHHHHHHHHHHHCC----------
T ss_pred hhhhcCCeE---EEEEECCCCCCHHHHHHHHHHHHHhcCCCCCccc
Confidence 0111111 1346888999999999999998887666555544
No 136
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.1e-14 Score=128.62 Aligned_cols=163 Identities=19% Similarity=0.152 Sum_probs=93.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
...+|+|+|.+|+|||||+|.++|... +.....+.+.+ .....+.+ ++. .+.++||||... . . .
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d--~~~~~i~~-~~~~~~l~~~Dt~g~~~-----~---~--~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGED--TYERTLMV-DGESATIILLDMWENKG-----E---N--E 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTT--EEEEEEEE-TTEEEEEEEECCTTTTH-----H---H--H
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCcccee--eEEEEEEE-CCeeeEEEEeecCCCcc-----h---h--h
Confidence 347899999999999999999997543 22221111222 22222333 444 467899998432 0 1 1
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL 173 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~ 173 (371)
.....++..+|++++|+|++++-+-.. ..++..+..... ....|+++|.||+|+........++ ...+.
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~~r~v~~~e---------~~~~a 172 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVRCREVSVSE---------GRACA 172 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGGGCCSCHHH---------HHHHH
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhcCceEeHHH---------HHHHH
Confidence 122345677899999999984322111 122233332211 1124999999999975321111111 11222
Q ss_pred HhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 174 QLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 174 ~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+..++ ..||+++.|+++|++.+...+.
T Consensus 173 ~~~~~~~~------e~SAk~g~~v~elf~~l~~~i~ 202 (211)
T 2g3y_A 173 VVFDCKFI------ETSAAVQHNVKELFEGIVRQVR 202 (211)
T ss_dssp HHHTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HHcCCEEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 23333333 3688899999999999887654
No 137
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.60 E-value=9.8e-15 Score=141.51 Aligned_cols=168 Identities=15% Similarity=0.130 Sum_probs=102.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccc--------------eeEEEEeEEe----eCCcEEEEEeCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAIT--------------KTCEMKTTVL----KDGQVVNVIDTPG 78 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t--------------~~~~~~~~~~----~~~~~i~liDTPG 78 (371)
.+..+|+++|++|+|||||+|+|+|....... .....+ .........+ .....+.+|||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKL-GYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSS-EEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCccccccc-CccccceeeccccccccceecccccccccccccccccceEEEEECCC
Confidence 34589999999999999999999985432110 000000 0000000000 0125789999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhH
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTL 157 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l 157 (371)
..+ +.......+..+|++|+|+|++.+. .......+..+... +. .|+++|+||+|.... ...
T Consensus 85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~--~~~ 147 (403)
T 3sjy_A 85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK--EEA 147 (403)
T ss_dssp CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH--HHH
T ss_pred cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch--HHH
Confidence 643 2223333456789999999999776 55556666555543 43 389999999998755 333
Q ss_pred HHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 158 EDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 158 ~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
...... +...+..++...+ +....||+++.|+.+|++.+...++.
T Consensus 148 ~~~~~~-----i~~~l~~~~~~~~---~ii~vSA~~g~gi~~L~~~l~~~l~~ 192 (403)
T 3sjy_A 148 LSQYRQ-----IKQFTKGTWAENV---PIIPVSALHKINIDSLIEGIEEYIKT 192 (403)
T ss_dssp HHHHHH-----HHHHHTTSTTTTC---CEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred HHHHHH-----HHHHHHhhCCCCC---EEEEEECCCCcChHHHHHHHHHhCCC
Confidence 333332 4444433321111 11236788899999999999987654
No 138
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.60 E-value=2e-15 Score=142.36 Aligned_cols=160 Identities=13% Similarity=0.024 Sum_probs=95.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI 97 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~ 97 (371)
...+|+|+|.+|+|||||+|.|++...... ..|.......+.. .+..+.|+||||...... ..
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~-----------~~ 226 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIRP-----------LW 226 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----CC-----------SH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHHH-----------HH
Confidence 346899999999999999999998774322 1233344444444 677899999999543221 12
Q ss_pred hhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
..++..+|++|+|+|++++-+-. ...+...+...... ..|+++|+||+|.... ....+... .+..
T Consensus 227 ~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~--~~piilV~NK~Dl~~~--~~~~~i~~---------~~~~ 293 (329)
T 3o47_A 227 RHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELR--DAVLLVFANKQDLPNA--MNAAEITD---------KLGL 293 (329)
T ss_dssp HHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGT--TCEEEEEEECTTSTTC--CCHHHHHH---------HHTC
T ss_pred HHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccC--CCeEEEEEECccCCcc--cCHHHHHH---------Hhch
Confidence 33456789999999998543322 22222222221111 2499999999998755 22222111 1111
Q ss_pred c--CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 C--DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~--~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. ....+. ....||+++.|+++|++.|...+..
T Consensus 294 ~~~~~~~~~---~~~vSAk~g~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 294 HSLRHRNWY---IQATCATSGDGLYEGLDWLSNQLRN 327 (329)
T ss_dssp TTCCSSCEE---EEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred hhhhcCCCE---EEEEECCCCcCHHHHHHHHHHHHHh
Confidence 0 011111 1236888899999999999877653
No 139
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.60 E-value=2.5e-14 Score=125.49 Aligned_cols=174 Identities=11% Similarity=0.193 Sum_probs=97.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcch--HHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAES--EYVSKEIA 94 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~--~~~~~ei~ 94 (371)
.++.+|+|+|++|+|||||+|+|+|...........+.+..... +.+ .+ .+.++||||+.....+. ........
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~--~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 99 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINL--FEV-AD-GKRLVDLPGYGYAEVPEEMKRKWQRAL 99 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEE--EEE-ET-TEEEEECCCCC------CCHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEE--EEe-cC-CEEEEECcCCcccccCHHHHHHHHHHH
Confidence 45579999999999999999999998721111112233322221 222 22 57799999986532111 01111122
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
.........++++++|+|+..+.+..+.....++.. .+ .|+++|.||+|.+.. ......+.. +..++.
T Consensus 100 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~-~~----~~~~~v~nK~D~~s~--~~~~~~~~~-----~~~~~~ 167 (210)
T 1pui_A 100 GEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVD-SN----IAVLVLLTKADKLAS--GARKAQLNM-----VREAVL 167 (210)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-TT----CCEEEEEECGGGSCH--HHHHHHHHH-----HHHHHG
T ss_pred HHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHH-cC----CCeEEEEecccCCCc--hhHHHHHHH-----HHHHHH
Confidence 222223457899999999987776655555555542 22 388999999998754 221111111 333444
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..+.. .+.|++++.++.++++.+.+.+..
T Consensus 168 ~~~~~~~~----~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 168 AFNGDVQV----ETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp GGCSCEEE----EECBTTTTBSHHHHHHHHHHHHC-
T ss_pred hcCCCCce----EEEeecCCCCHHHHHHHHHHHHhh
Confidence 33321221 235778889999999999887765
No 140
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.60 E-value=1.5e-15 Score=151.58 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=81.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc----------------cC----CCCCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK----------------AS----AGSSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~----------------~~----~~~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
..++|+|+|++|+|||||+|+|++..... .. ....++|.......+.+ .+..++|||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 45799999999999999999996211000 00 00012333333444555 77899999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|+.+... ....++..+|++|+|+|++.+........+..+... . .|+++|+||+|....
T Consensus 91 G~~df~~-----------~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTE-----------DTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCH-----------HHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCS
T ss_pred CchhHHH-----------HHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCccc
Confidence 9887522 123345567999999999988888877777666532 2 399999999998754
No 141
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.59 E-value=3.4e-15 Score=142.59 Aligned_cols=130 Identities=18% Similarity=0.250 Sum_probs=80.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee---EE-----------------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT---CE----------------------------------- 59 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~---~~----------------------------------- 59 (371)
.-+.|+|+|.+|||||||+|+|+|...++.+... +|.. ..
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~--vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~ 110 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGI--VTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDE 110 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSS--CCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCc--ccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHH
Confidence 3459999999999999999999998765443221 1100 00
Q ss_pred ----------------EEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHH
Q 040649 60 ----------------MKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEE 121 (371)
Q Consensus 60 ----------------~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~ 121 (371)
...+..+....+.||||||+...... .......+...+..++..+|++|+|++.... ....
T Consensus 111 ~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~-~~~~ 189 (360)
T 3t34_A 111 TDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ-DLAT 189 (360)
T ss_dssp HHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS-CGGG
T ss_pred HHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC-CcCC
Confidence 00011113456899999999875321 1223345556666667789999999976521 2222
Q ss_pred HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 122 EAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 122 ~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+..+...... ..|+++|+||+|....
T Consensus 190 ~~~~~l~~~~~~~--~~~~i~V~nK~Dl~~~ 218 (360)
T 3t34_A 190 SDAIKISREVDPS--GDRTFGVLTKIDLMDK 218 (360)
T ss_dssp CHHHHHHHHSCTT--CTTEEEEEECGGGCCT
T ss_pred HHHHHHHHHhccc--CCCEEEEEeCCccCCC
Confidence 3344455443322 2499999999998855
No 142
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.59 E-value=9.3e-15 Score=143.08 Aligned_cols=168 Identities=15% Similarity=0.108 Sum_probs=101.2
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-----------------------------CCCCccceeEEEEeEE
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILGRRAFKAS-----------------------------AGSSAITKTCEMKTTV 64 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-----------------------------~~~~~~t~~~~~~~~~ 64 (371)
.+..+..+|+++|++|+|||||+|.|++....... ....++|.......+.
T Consensus 12 ~~~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~ 91 (439)
T 3j2k_7 12 APKKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFE 91 (439)
T ss_pred CCCCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEe
Confidence 34456689999999999999999999654210000 0013556666666565
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCCCCC
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFS-------QEEEAAVHRLQTLFGKKIF 137 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~ 137 (371)
+ .+..+.||||||+.+ +...+...+..+|++|+|+|++.+.. ......+..+.. .+.
T Consensus 92 ~-~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~-~~v--- 155 (439)
T 3j2k_7 92 T-EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT-AGV--- 155 (439)
T ss_pred c-CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH-cCC---
Confidence 5 678999999999643 23333334556799999999986543 344444444443 232
Q ss_pred CeEEEEEeCCCCCCCc--hhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHH
Q 040649 138 DYMIVVFTGGDDLEDN--EKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLS 202 (371)
Q Consensus 138 ~~~ilv~tk~D~~~~~--~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~ 202 (371)
.++++|+||+|....+ ....+..... +..++..++-.........+.||+++.|+.++.+
T Consensus 156 ~~iIvviNK~Dl~~~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 156 KHLIVLINKMDDPTVNWSNERYEECKEK-----LVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CeEEEEeecCCCcccchHHHHHHHHHHH-----HHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 2499999999986431 1222322222 4455554442100000123468888999988544
No 143
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.58 E-value=4.1e-14 Score=135.02 Aligned_cols=172 Identities=14% Similarity=0.127 Sum_probs=98.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
++|+|+|++|+|||||+|+|+|...... ...+.|.......+.+ ++..+.++||||+..... .. ....+... ..
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~lp-~~-lve~f~~t-l~ 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGIP-PQ-IVDAFFVT-LS 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSCC-GG-GHHHHHHH-HH
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcCC-HH-HHHHHHHH-HH
Confidence 4599999999999999999999875322 1223343333344555 678899999999754211 11 11222222 22
Q ss_pred hcCCceEEEEEEeCCCCC--CHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 100 AKDGIHAVLLVFSVRSRF--SQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~--~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
.+..+|++++|+|++++. ..... .+...+.. ++. ...|+++|+||+|..... ....+.. +..+....
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~-l~~-~~~p~ilV~NK~Dl~~~~---~~~~~~~-----~~~l~~~l 323 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILRE-IGV-SGKPILVTLNKIDKINGD---LYKKLDL-----VEKLSKEL 323 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHH-HTC-CSCCEEEEEECGGGCCSC---HHHHHHH-----HHHHHHHH
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHH-hCc-CCCCEEEEEECCCCCCch---HHHHHHH-----HHHHHHHh
Confidence 456779999999998543 11112 12333443 331 124999999999987541 1111110 11222222
Q ss_pred -CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 177 -DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 177 -~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
...+. ....|++++.|+++|++.|...+...
T Consensus 324 ~~~~~~----~~~~SA~~g~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 324 YSPIFD----VIPISALKRTNLELLRDKIYQLATQL 355 (364)
T ss_dssp CSCEEE----EEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred cCCCCc----EEEEECCCCcCHHHHHHHHHHHhccc
Confidence 11111 13468888999999999999888764
No 144
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.58 E-value=3e-14 Score=133.11 Aligned_cols=169 Identities=17% Similarity=0.080 Sum_probs=97.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH-HHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI-AKCI 97 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei-~~~~ 97 (371)
..+|+|+|.+|+|||||+|.+++...... ....+.|.........+.++..+.+|||||... ....+ ....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~-~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~-------~~~~~~~~~~ 74 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFD-TRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDV-------FMENYFTKQK 74 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGG-GGGCCCCCSEEEEEEEETTTEEEEEEEECCSHH-------HHHHHHTTTH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCcc-ccCcCCccceEEEEEEeCCceEEEEEECCCcHH-------HhhhhhhhHH
Confidence 47999999999999999999988743211 112344555555544443566899999999532 11111 1233
Q ss_pred hhhcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc
Q 040649 98 GMAKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC 176 (371)
Q Consensus 98 ~~~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~ 176 (371)
...+.++|++|+|+|++++.+..+. .+..++..........|+++|+||+|...+ ........ .....+..+....
T Consensus 75 ~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~--~~r~~~~~-v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 75 DHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQL--DKREELFQ-IMMKNLSETSSEF 151 (307)
T ss_dssp HHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH--HHHHHHHH-HHHHHHHHHHHTT
T ss_pred HHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccch--hhhhHHHH-HHHHHHHHHHHHc
Confidence 4455788999999999865444433 233334333211112499999999998753 11111000 0011245566655
Q ss_pred C---CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 177 D---NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 177 ~---~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+ ..++. .|+++ .++.+++..+.
T Consensus 152 g~~~~~~~~------tSa~~-~~i~e~~~~iv 176 (307)
T 3r7w_A 152 GFPNLIGFP------TSIWD-ESLYKAWSQIV 176 (307)
T ss_dssp TCCSCEEEE------CCTTS-SHHHHHHHHHH
T ss_pred CCCCeEEEE------eeecC-ChHHHHHHHHH
Confidence 5 23333 45555 56666665544
No 145
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.58 E-value=1.1e-14 Score=141.29 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=105.2
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCC-------ccccC--C------CCCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRR-------AFKAS--A------GSSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~-------~~~~~--~------~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
..+..+|+++|++|+|||||+|+|++.. .+... . ...+.|.......+.. .+..+.||||||+.
T Consensus 8 ~~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~ 86 (405)
T 2c78_A 8 TKPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHA 86 (405)
T ss_dssp -CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSG
T ss_pred CCCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChH
Confidence 3456899999999999999999998731 10000 0 0123344333333333 56789999999976
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLED 159 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~ 159 (371)
+. .......+..+|++|+|+|++++........+..+... + .| +++|+||+|...+ ...++.
T Consensus 87 ~f-----------~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~-~----ip~iivviNK~Dl~~~-~~~~~~ 149 (405)
T 2c78_A 87 DY-----------IKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFMNKVDMVDD-PELLDL 149 (405)
T ss_dssp GG-----------HHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT-T----CCCEEEEEECGGGCCC-HHHHHH
T ss_pred HH-----------HHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc-C----CCEEEEEEECccccCc-HHHHHH
Confidence 52 22233345678999999999877777777776666542 3 26 8999999998753 122222
Q ss_pred HhcccCCchHHHHHHhcC-----CceEeecCcchhhHhhHHh------------------HHHHHHHHHHHHhh
Q 040649 160 YLGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRTEQ------------------VQQLLSLVNAVNVK 210 (371)
Q Consensus 160 ~l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~~~------------------i~~Ll~~i~~~~~~ 210 (371)
.... +..++..++ .++++ .||+++.+ +.+|++.+...++.
T Consensus 150 ~~~~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~ 212 (405)
T 2c78_A 150 VEME-----VRDLLNQYEFPGDEVPVIR------GSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT 212 (405)
T ss_dssp HHHH-----HHHHHHHTTSCTTTSCEEE------CCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred HHHH-----HHHHHHHhcccccCCCEEE------ccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence 2222 445555544 22333 56777766 78888888887653
No 146
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.58 E-value=1.2e-14 Score=141.12 Aligned_cols=166 Identities=14% Similarity=0.189 Sum_probs=103.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEee--------------C--------CcEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLK--------------D--------GQVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~i~l 73 (371)
.+..+|+++|++|+|||||+++|+|....... ....++|....+....+. . ...++|
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 87 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF 87 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence 45589999999999999999999986431111 111233443332222110 0 157999
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|||||.. .+ ...+......+|++|+|+|++.+. .......+..+.. ++. .|+++|+||+|....
T Consensus 88 iDtPGh~-------~f----~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-~~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 88 IDAPGHE-------AL----MTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQI-IGQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp EECSSHH-------HH----HHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHH-HTC---CCEEEEEECGGGSCH
T ss_pred EECCChH-------HH----HHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHH-cCC---CcEEEEEECccCCCH
Confidence 9999942 22 222333344679999999999765 5566666655543 343 389999999998754
Q ss_pred chhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
......... +..++... ..+++ ..||+++.++.+|++.|...++.
T Consensus 153 --~~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 153 --EKALENYRQ-----IKEFIEGTVAENAPII------PISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp --HHHHHHHHH-----HHHHHTTSTTTTCCEE------ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred --HHHHHHHHH-----HHHHHHhcCcCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence 222222222 34444421 12233 36788899999999999987664
No 147
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=2.2e-14 Score=136.95 Aligned_cols=154 Identities=19% Similarity=0.237 Sum_probs=79.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----CccceeEEEEeEEee-CCc--EEEEEeCCCCCCCCcc-----
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SAITKTCEMKTTVLK-DGQ--VVNVIDTPGLFDSSAE----- 85 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~~--~i~liDTPG~~~~~~~----- 85 (371)
..+|+|+|++|+|||||+|+|+|...+...... ...|.........+. .+. .++||||||+++....
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 368999999999999999999988765443211 012322222222221 232 6899999999764321
Q ss_pred --hHHHHHHHHHHHhhh---------cCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 86 --SEYVSKEIAKCIGMA---------KDGIHAVLLVFSV-RSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 86 --~~~~~~ei~~~~~~~---------~~~~d~vl~v~d~-~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
...+...+..++... ...+|+++|+++. ..++...+..++..+ ... .|+|+|+||+|....
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l----~~~--~piIlV~NK~Dl~~~- 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI----HNK--VNIVPVIAKADTLTL- 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT----CS---SCEEEEEECCSSSCH-
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh----ccC--CCEEEEEECCCCCCH-
Confidence 111112222333221 1246789999976 467887776555443 223 399999999998765
Q ss_pred hhhHHHHhcccCCchHHHHHHhcCCceEeecC
Q 040649 154 EKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185 (371)
Q Consensus 154 ~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~ 185 (371)
..+..+... +...+..++.+++.++.
T Consensus 190 -~ev~~~k~~-----i~~~~~~~~i~~~~~Sa 215 (361)
T 2qag_A 190 -KERERLKKR-----ILDEIEEHNIKIYHLPD 215 (361)
T ss_dssp -HHHHHHHHH-----HHHHTTCC-CCSCCCC-
T ss_pred -HHHHHHHHH-----HHHHHHHCCCCEEeCCC
Confidence 444433332 45555555656665543
No 148
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.57 E-value=4.9e-14 Score=136.44 Aligned_cols=168 Identities=17% Similarity=0.248 Sum_probs=83.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC----CccceeEEEEeEEee-CC--cEEEEEeCCCCCCCCcchHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS----SAITKTCEMKTTVLK-DG--QVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~----~~~t~~~~~~~~~~~-~~--~~i~liDTPG~~~~~~~~~~~~ 90 (371)
-..+|+|+|++|+|||||+|+|+|...+..+... ...|.......+.+. .+ ..++++||||++.... ....+
T Consensus 30 vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~-~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD-NSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC------------C
T ss_pred CCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhcc-chhhH
Confidence 3468999999999999999999998764332110 111222222222111 12 2689999999976421 11111
Q ss_pred HHHH--------HHH-------hhhc--CCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 91 KEIA--------KCI-------GMAK--DGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 91 ~ei~--------~~~-------~~~~--~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+. .++ ...+ +.+|++||+++.+ +++...+..++..+. . . .|+|+|+||+|.+..
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~-~--v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---E-K--VNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---T-T--SEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---c-c--CcEEEEEEcccCccH
Confidence 1111 111 1112 3456777777765 578888866665553 2 2 499999999998865
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
..+..+... +...+...+.+++.|+.. ++.++.+++..+.
T Consensus 183 --~ev~~~k~~-----i~~~~~~~~i~~~~~sa~------~~~~v~~~~~~l~ 222 (418)
T 2qag_C 183 --EECQQFKKQ-----IMKEIQEHKIKIYEFPET------DDEEENKLVKKIK 222 (418)
T ss_dssp --HHHHHHHHH-----HHHHHHHHTCCCCCCC---------------------
T ss_pred --HHHHHHHHH-----HHHHHHHcCCeEEeCCCC------CCcCHHHHHHHHH
Confidence 455554443 556666667777665532 3455555554443
No 149
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.57 E-value=3e-14 Score=137.82 Aligned_cols=164 Identities=18% Similarity=0.163 Sum_probs=105.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc------ccc----C----CCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA------FKA----S----AGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSS 83 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~------~~~----~----~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~ 83 (371)
+..+|+++|++|+|||||+++|++... +.. . ....+.|.......+.. .+..+.||||||+.+
T Consensus 2 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~-- 78 (397)
T 1d2e_A 2 PHVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD-- 78 (397)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH--
T ss_pred CeEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH--
Confidence 357999999999999999999987421 000 0 00123444443333333 567899999999532
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHHhc
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
+...+...+..+|++|+|+|++.+........+..+.. .+ .| +++|+||+|...+ ...++....
T Consensus 79 ---------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~-~~----vp~iivviNK~Dl~~~-~~~~~~~~~ 143 (397)
T 1d2e_A 79 ---------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQ-IG----VEHVVVYVNKADAVQD-SEMVELVEL 143 (397)
T ss_dssp ---------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHH-TT----CCCEEEEEECGGGCSC-HHHHHHHHH
T ss_pred ---------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHH-cC----CCeEEEEEECcccCCC-HHHHHHHHH
Confidence 33334455678899999999997777777766665554 23 25 7899999998753 122222222
Q ss_pred ccCCchHHHHHHhcCC-----ceEeecCcchhhHhhHH---------h-HHHHHHHHHHHHhh
Q 040649 163 LECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRTE---------Q-VQQLLSLVNAVNVK 210 (371)
Q Consensus 163 ~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~~---------~-i~~Ll~~i~~~~~~ 210 (371)
. +..++..++. ++++ .||+++. + +.+|++.+...++.
T Consensus 144 ~-----~~~~l~~~~~~~~~~~~i~------~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 144 E-----IRELLTEFGYKGEETPIIV------GSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp H-----HHHHHHHTTSCTTTSCEEE------CCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred H-----HHHHHHHcCCCcccCcEEE------eehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 2 4555655541 2333 5666654 4 88999999887764
No 150
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.57 E-value=8e-14 Score=135.30 Aligned_cols=166 Identities=15% Similarity=0.226 Sum_probs=96.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC-CCCCccceeEEEEeEEee--------------C--------CcEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS-AGSSAITKTCEMKTTVLK--------------D--------GQVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~-~~~~~~t~~~~~~~~~~~--------------~--------~~~i~l 73 (371)
.+..+|+++|++++|||||+++|+|....... ....+.|....+....+. + ...+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 45689999999999999999999986431111 111233443332211110 1 157999
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|||||..+ +...+......+|++|+|+|++.+. .......+..+.. ++. .|+++|+||+|....
T Consensus 86 iDtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~-l~~---~~iivv~NK~Dl~~~ 150 (408)
T 1s0u_A 86 VDSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEI-LGI---DKIIIVQNKIDLVDE 150 (408)
T ss_dssp EECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHH-TTC---CCEEEEEECTTSSCT
T ss_pred EECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHH-cCC---CeEEEEEEccCCCCH
Confidence 99999421 3333444456789999999999765 5555655555543 343 389999999998765
Q ss_pred chhhHHHHhcccCCchHHHHHHhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
. ........ +..++... +.+++ ..||+++.++.+|++.+...++.
T Consensus 151 ~--~~~~~~~~-----i~~~l~~~~~~~~~~i------~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 151 K--QAEENYEQ-----IKEFVKGTIAENAPII------PISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp T--TTTTHHHH-----HHHHHTTSTTTTCCEE------EC------CHHHHHHHHHHHSCC
T ss_pred H--HHHHHHHH-----HHHHHhhcCCCCCeEE------EeeCCCCCCHHHHHHHHHHhCCC
Confidence 2 11111111 33344321 12233 36888999999999999987654
No 151
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.57 E-value=8.4e-15 Score=140.12 Aligned_cols=151 Identities=15% Similarity=0.154 Sum_probs=99.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|++++|||||+++|+ ..++|.......+.+ .+..+++|||||..+. ...+.. .
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~----------~~giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-------~~~~~~----~ 80 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG----------KKGTSSDITMYNNDK-EGRNMVFVDAHSYPKT-------LKSLIT----A 80 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS----------EEEEESSSEEEEECS-SSSEEEEEECTTTTTC-------HHHHHH----H
T ss_pred EEEEECCCCCCHHHHHHHHH----------hCCEEEEeeEEEEec-CCeEEEEEECCChHHH-------HHHHHH----H
Confidence 89999999999999999998 123444444444555 6778999999998763 122222 3
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeE-EEEEe-CCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM-IVVFT-GGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~-ilv~t-k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
+..+|++|+|+| +..........+..+.. ++. |. ++|+| |+|. .. ..++..... ++.++...+.
T Consensus 81 ~~~aD~ailVvd-~~g~~~qt~e~~~~~~~-~~i----~~~ivvvNNK~Dl-~~--~~~~~~~~~-----i~~~l~~~~~ 146 (370)
T 2elf_A 81 LNISDIAVLCIP-PQGLDAHTGECIIALDL-LGF----KHGIIALTRSDST-HM--HAIDELKAK-----LKVITSGTVL 146 (370)
T ss_dssp HHTCSEEEEEEC-TTCCCHHHHHHHHHHHH-TTC----CEEEEEECCGGGS-CH--HHHHHHHHH-----HHHHTTTSTT
T ss_pred HHHCCEEEEEEc-CCCCcHHHHHHHHHHHH-cCC----CeEEEEEEeccCC-CH--HHHHHHHHH-----HHHHHHhcCC
Confidence 356799999999 76666666666665554 332 54 88999 9997 33 333322222 4444443331
Q ss_pred ceEeecCcch--hhHhh---HHhHHHHHHHHHHHHhh
Q 040649 179 RWVLFDNKTK--YEAKR---TEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 179 r~~~f~~~~~--~sa~~---~~~i~~Ll~~i~~~~~~ 210 (371)
..++ ... .||++ +.|+++|++.|...++.
T Consensus 147 ~~~~---ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~ 180 (370)
T 2elf_A 147 QDWE---CISLNTNKSAKNPFEGVDELKARINEVAEK 180 (370)
T ss_dssp TTCE---EEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred CceE---EEecccccccCcCCCCHHHHHHHHHhhccc
Confidence 1111 123 57778 89999999998877654
No 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.56 E-value=1.3e-14 Score=124.91 Aligned_cols=168 Identities=14% Similarity=0.105 Sum_probs=87.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC-ccccCCCCCccceeEEEEeEEe----eCCcEEEEEeCCCCCCCCcchHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR-AFKASAGSSAITKTCEMKTTVL----KDGQVVNVIDTPGLFDSSAESEYVSKEIA 94 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~-~~~~~~~~~~~t~~~~~~~~~~----~~~~~i~liDTPG~~~~~~~~~~~~~ei~ 94 (371)
.+|+|+|++|+|||||+|.++|.. .+.... .+.+........... .....+.++||||... +.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~-~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~ 70 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQ-SATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE-----------FY 70 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC------------CSEEEEEEEC---------CEEEEEEECSHHH-----------HH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCc-ceeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------HH
Confidence 689999999999999999999863 222111 111111111111111 1345789999999431 11
Q ss_pred HHHhhhcCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 95 KCIGMAKDGIHAVLLVFSVRSRFSQE--EEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 95 ~~~~~~~~~~d~vl~v~d~~~~~~~~--~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
.....++.+.|++++|+|++++.+.. -..++..+....+ . .|+++|.||+|.... ......... ....+
T Consensus 71 ~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~-~--~piilv~nK~Dl~~~--~~~~~~~~~----~~~~~ 141 (184)
T 2zej_A 71 STHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARAS-S--SPVILVGTHLDVSDE--KQRKACMSK----ITKEL 141 (184)
T ss_dssp TTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCT-T--CEEEEEEECGGGCCH--HHHHHHHHH----HHHHT
T ss_pred HhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCC-C--CcEEEEEECCCcccc--hhhHHHHHH----HHHHH
Confidence 11122334569999999998542211 1233343433322 2 399999999997643 222211111 01122
Q ss_pred HHhcCCceEeecCcchhhHhhHH-hHHHHHHHHHHHHhh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTE-QVQQLLSLVNAVNVK 210 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~-~i~~Ll~~i~~~~~~ 210 (371)
....+... .......||+++. ++.+|++.+.+.+..
T Consensus 142 ~~~~~~~~--~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 142 LNKRGFPA--IRDYHFVNATEESDALAKLRKTIINESLN 178 (184)
T ss_dssp TTCTTSCE--EEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred HHhcCCcc--hhheEEEecccCchhHHHHHHHHHHHHhc
Confidence 22222220 0011235777774 999999998876654
No 153
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.56 E-value=1.6e-14 Score=141.33 Aligned_cols=159 Identities=13% Similarity=0.130 Sum_probs=98.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc--ccc------------CC---C--------------CCccceeEEEEeEEe
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA--FKA------------SA---G--------------SSAITKTCEMKTTVL 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~--~~~------------~~---~--------------~~~~t~~~~~~~~~~ 65 (371)
.+..+|+++|++|+|||||+|.|++... +.. +. . ..++|....+..+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 4457999999999999999999986531 000 00 0 013343333333444
Q ss_pred eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 66 KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 66 ~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.+..+.||||||..+. ...+ ...+..+|++|+|+|++.+........+..+.. ++. .|+++|+|
T Consensus 102 -~~~~~~iiDtpGh~~f-------~~~~----~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~-~~~---~~iIvviN 165 (434)
T 1zun_B 102 -AKRKFIIADTPGHEQY-------TRNM----ATGASTCDLAIILVDARYGVQTQTRRHSYIASL-LGI---KHIVVAIN 165 (434)
T ss_dssp -SSEEEEEEECCCSGGG-------HHHH----HHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHH-TTC---CEEEEEEE
T ss_pred -CCceEEEEECCChHHH-------HHHH----HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHH-cCC---CeEEEEEE
Confidence 6678999999996542 1222 234567899999999997777777666665543 332 37999999
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcC--CceEeecCcchhhHhhHHhHHH
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCD--NRWVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~ 199 (371)
|+|....+...+...... +..++..++ ...+++ ...||+++.|+.+
T Consensus 166 K~Dl~~~~~~~~~~i~~~-----~~~~~~~~g~~~~~~~~---i~vSA~~g~gi~~ 213 (434)
T 1zun_B 166 KMDLNGFDERVFESIKAD-----YLKFAEGIAFKPTTMAF---VPMSALKGDNVVN 213 (434)
T ss_dssp CTTTTTSCHHHHHHHHHH-----HHHHHHTTTCCCSEEEE---EECCTTTCTTTSS
T ss_pred cCcCCcccHHHHHHHHHH-----HHHHHHHhCCCccCceE---EEEeccCCCCccc
Confidence 999875322333333332 555666555 211111 2357777888876
No 154
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.55 E-value=1.5e-16 Score=158.39 Aligned_cols=161 Identities=15% Similarity=0.165 Sum_probs=106.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.++|+++|++|+|||||+|+|++...... ..+++|.....+.+.+..+..++||||||..++... ..
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~-----------~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAM-----------RA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTS-----------BB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHH-----------HH
Confidence 36899999999999999999998765322 234445444444444435668999999997664221 23
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH---HHh
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI---LQL 175 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~---~~~ 175 (371)
..+..+|++|+|+|++++........+..+... . .|+++|+||+|....+....... +... ...
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~~~~~v~~~--------l~~~~~~~e~ 137 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEADPEKVKKE--------LLAYDVVCED 137 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTTSCCSSSSH--------HHHTTSCCCC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEecccccccchHHHHHH--------HHhhhhhHHh
Confidence 445678999999999988888777776666532 2 39999999999864421111111 1111 111
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
++..+. ....||+++.|+.+|++.+..++.
T Consensus 138 ~~~~~~----iv~vSAktG~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 138 YGGDVQ----AVHVSALTGENMMALAEATIALAE 167 (537)
T ss_dssp SSSSEE----ECCCCSSSSCSSHHHHHHHHHHHT
T ss_pred cCCCce----EEEEECCCCCCchhHHHHHHHhhh
Confidence 111111 234688899999999999988765
No 155
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.55 E-value=8.3e-14 Score=132.63 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=94.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC--Cccc-----------------------ee----------------
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGS--SAIT-----------------------KT---------------- 57 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~--~~~t-----------------------~~---------------- 57 (371)
.++|+|+|.+|+|||||+|+|+|....+..... ...+ +.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 468999999999999999999998764322110 0001 00
Q ss_pred --------EEEEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhc-CCceEEEEEEeCCCCCCHHHHHHHH
Q 040649 58 --------CEMKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAK-DGIHAVLLVFSVRSRFSQEEEAAVH 126 (371)
Q Consensus 58 --------~~~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~~~l~ 126 (371)
.....+..+++..++||||||+...... .......+...+..++ ...+++|+|++++..+...+. +.
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~ 188 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LK 188 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HH
Confidence 0000011112467999999999864221 1111122233333333 344677777888755555443 23
Q ss_pred HHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 127 RLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 127 ~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+....+.. .|+++|+||+|..... ....+++... . ......++. ....||+++.++.+|++.+..
T Consensus 189 i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~~~-------~-~~l~~~~~~---v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLENK-------L-LPLRRGYIG---VVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHTTC-------S-SCCTTCEEE---CCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCcCC--CceEEEeccccccCcc-hhHHHHHhCC-------c-ccccCCceE---EEeCCcccccccccHHHHHHH
Confidence 344333322 4999999999987542 1122222110 0 001112222 234688899999999988865
No 156
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.55 E-value=2.1e-14 Score=142.30 Aligned_cols=158 Identities=14% Similarity=0.142 Sum_probs=96.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-cc----------------------------cCCCCCccceeEEEEeEEeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FK----------------------------ASAGSSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~----------------------------~~~~~~~~t~~~~~~~~~~~~~ 68 (371)
+..+|+++|++|+|||||+|.|++... +. ......++|.......+.. .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 347999999999999999999975511 00 0001124555555555555 67
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeEE
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~i 141 (371)
..+.||||||+.+ +.......+..+|++|+|+|++.+ +.......+..+.. ++. .|++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~-~~~---~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH-TTC---CCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH-cCC---CcEE
Confidence 8999999999754 223334445678999999999865 33445555444443 332 3799
Q ss_pred EEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc--eEeecCcchhhHhhHHhHHH
Q 040649 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR--WVLFDNKTKYEAKRTEQVQQ 199 (371)
Q Consensus 142 lv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r--~~~f~~~~~~sa~~~~~i~~ 199 (371)
+|+||+|.........++.... +..++..++.. .++| ...||+++.|+.+
T Consensus 176 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~---i~iSA~~g~gi~e 227 (483)
T 3p26_A 176 IAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFEDNINW---VPISGFSGEGVYK 227 (483)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGEEE---EECCSSSCTTSSS
T ss_pred EEEECcCcccchHHHHHHHHHH-----HHHHHHHcCCCcccceE---EEEeeecCCCccc
Confidence 9999999876433444443333 45555544421 1111 2356667777763
No 157
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.31 E-value=4.6e-16 Score=136.17 Aligned_cols=167 Identities=14% Similarity=-0.007 Sum_probs=94.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe-eCCcEEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL-KDGQVVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
....+|+|+|.+|+|||||+|.+++........ +.+.......... .....+.+|||||.... ..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~-----------~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYI---PTVFDNYSANVMVDGKPVNLGLWDTAGQEDY-----------DR 93 (204)
Confidence 345899999999999999999999765422211 1111111111122 12335669999996542 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcc-----cCCch
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE--EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGL-----ECPKP 168 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~--~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~-----~~~~~ 168 (371)
.....+..+|++++|+|++++.+-.+ ..++..+....+ ..|+++|+||+|.... ....+.+.. .....
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~v~~~~ 168 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD--KDTIEKLKEKKLTPITYPQ 168 (204)
Confidence 22334567899999999885433332 234445544332 2499999999998754 111111100 00011
Q ss_pred HHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHH
Q 040649 169 LKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAV 207 (371)
Q Consensus 169 l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~ 207 (371)
...+....+. ......||+++.|+++|++.+.+.
T Consensus 169 ~~~~~~~~~~-----~~~~~vSA~~g~gi~~l~~~l~~~ 202 (204)
T 3th5_A 169 GLAMAKEIGA-----VKYLECSALTQRGLKTVFDEAIRA 202 (204)
Confidence 2222222221 112347889999999999987653
No 158
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.54 E-value=8.9e-15 Score=141.15 Aligned_cols=151 Identities=15% Similarity=0.209 Sum_probs=85.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCC--CCccceeEEEEeEEeeCC---cEEEEEeCCCCCCCCcchHH------
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAG--SSAITKTCEMKTTVLKDG---QVVNVIDTPGLFDSSAESEY------ 88 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~--~~~~t~~~~~~~~~~~~~---~~i~liDTPG~~~~~~~~~~------ 88 (371)
++++|+|+||+|||||+|+|+|......... ..+.+.. ...+.+... ..++++||||++.... ...
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~--~i~~v~Q~~~l~~~ltv~D~~~~g~~~~-~~~~~~~i~ 119 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQ--SNTYDLQESNVRLKLTIVSTVGFGDQIN-KEDSYKPIV 119 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEE--EEEEEEEC--CEEEEEEEEEECCCC-CC-HHHHSHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEe--eEEEEeecCccccccchhhhhhhhhccc-cchhhhHHH
Confidence 4499999999999999999999864221111 1122221 122222122 2689999999986421 111
Q ss_pred --HHHHHHHHHhhh---------cC--CceE-EEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCch
Q 040649 89 --VSKEIAKCIGMA---------KD--GIHA-VLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNE 154 (371)
Q Consensus 89 --~~~ei~~~~~~~---------~~--~~d~-vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~ 154 (371)
+...+..++... .. .+|+ ++|++|++++++..+..+++.|. .. .|+|+|+||+|.+.+
T Consensus 120 ~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~----~~--~~vI~Vi~KtD~Lt~-- 191 (427)
T 2qag_B 120 EFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD----SK--VNIIPIIAKADAISK-- 191 (427)
T ss_dssp HHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC----SC--SEEEEEESCGGGSCH--
T ss_pred HHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh----hC--CCEEEEEcchhccch--
Confidence 111222222211 11 2354 55666887789988876666664 22 399999999999876
Q ss_pred hhHHHHhcccCCchHHHHHHhcCCceEeecCc
Q 040649 155 KTLEDYLGLECPKPLKEILQLCDNRWVLFDNK 186 (371)
Q Consensus 155 ~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~ 186 (371)
..+..+... +..-+...+..++.|+..
T Consensus 192 ~E~~~l~~~-----I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 192 SELTKFKIK-----ITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHHHHHH-----HHHHHBTTBCCCCCCC--
T ss_pred HHHHHHHHH-----HHHHHHHcCCcEEecCCC
Confidence 556655554 555555567777777643
No 159
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.54 E-value=2.4e-13 Score=139.66 Aligned_cols=173 Identities=13% Similarity=0.129 Sum_probs=103.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCcccee----------------------------------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKT---------------------------------------- 57 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~---------------------------------------- 57 (371)
.-++|+|+|.+++|||||+|+|+|...++.+.. .+|..
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g--~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~ 127 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG--IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR 127 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS--CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc--cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhh
Confidence 346999999999999999999999887554321 11110
Q ss_pred -----------EEEEeEEeeCCcEEEEEeCCCCCCCCcc--hHHHHHHHHHHHhhhc-CCceEEEEEEeCCCCCCHHHH-
Q 040649 58 -----------CEMKTTVLKDGQVVNVIDTPGLFDSSAE--SEYVSKEIAKCIGMAK-DGIHAVLLVFSVRSRFSQEEE- 122 (371)
Q Consensus 58 -----------~~~~~~~~~~~~~i~liDTPG~~~~~~~--~~~~~~ei~~~~~~~~-~~~d~vl~v~d~~~~~~~~~~- 122 (371)
.....+..++...++||||||++..... .......+...+..+. ..+|++|+|+|++.++...+.
T Consensus 128 ~~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l 207 (772)
T 3zvr_A 128 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDAL 207 (772)
T ss_dssp HHCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHH
T ss_pred hcCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHH
Confidence 0011111223456899999999974321 1112222222222222 578999999999977766664
Q ss_pred HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh-cCCceEeecCcchhhHhhHHhHHHHH
Q 040649 123 AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL-CDNRWVLFDNKTKYEAKRTEQVQQLL 201 (371)
Q Consensus 123 ~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~-~~~r~~~f~~~~~~sa~~~~~i~~Ll 201 (371)
.++..+.. . ..|+++|+||+|.+..... .. .+... ...-...|......||+++.|+++|+
T Consensus 208 ~ll~~L~~---~--g~pvIlVlNKiDlv~~~~~-~~------------~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~ 269 (772)
T 3zvr_A 208 KIAKEVDP---Q--GQRTIGVITKLDLMDEGTD-AR------------DVLENKLLPLRRGYIGVVNRSQKDIDGKKDIT 269 (772)
T ss_dssp HHHHHHCT---T--CSSEEEEEECTTSSCTTCC-SH------------HHHTTCSSCCSSCEEECCCCCCEESSSSEEHH
T ss_pred HHHHHHHh---c--CCCEEEEEeCcccCCcchh-hH------------HHHHHHhhhhhccCCceEEecccccccchhHH
Confidence 44444432 1 2499999999998855211 11 11110 00000112234457888999999999
Q ss_pred HHHHH---HHhh
Q 040649 202 SLVNA---VNVK 210 (371)
Q Consensus 202 ~~i~~---~~~~ 210 (371)
+.+.. .++.
T Consensus 270 eaI~~e~~ffpe 281 (772)
T 3zvr_A 270 AALAAERKFFLS 281 (772)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccC
Confidence 99886 4554
No 160
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.54 E-value=4.3e-14 Score=122.18 Aligned_cols=120 Identities=8% Similarity=0.134 Sum_probs=71.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
....+|+|+|++|+|||||+|.|++.......... ..+.. ..+ .+..+.+|||||....... +..+
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~-~~~~~-----~~~-~~~~~~l~Dt~G~~~~~~~-------~~~~ 111 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQ-EPLSA-----ADY-DGSGVTLVDFPGHVKLRYK-------LSDY 111 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCC-------HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccC-CCcee-----eee-cCCeEEEEECCCCchHHHH-------HHHH
Confidence 45579999999999999999999987643221111 11111 111 4567889999998765332 2222
Q ss_pred HhhhcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhC-----CCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFG-----KKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~-----~~~~~~~ilv~tk~D~~~~ 152 (371)
+......+|++|+|+|++ .+ ........++...+. .....|+++|+||+|....
T Consensus 112 ~~~~~~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 112 LKTRAKFVKGLIFMVDSTVDP--KKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHHGGGEEEEEEEEETTCCH--HHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HHhhcccCCEEEEEEECCCCc--hhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 233334579999999997 22 111222223322221 0112499999999998765
No 161
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.53 E-value=4.3e-14 Score=132.74 Aligned_cols=167 Identities=15% Similarity=0.048 Sum_probs=100.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
...+|+++|.+|+|||||+|.+++....... .+++.......+.. ++. .+.++||||.... ..
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 218 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DR 218 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TT
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCccc---CCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hH
Confidence 3479999999999999999999976542221 11222111222233 444 4559999997542 12
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhc----ccCCchH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEEE--AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLG----LECPKPL 169 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~~--~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~----~~~~~~l 169 (371)
.....+..+|++++|+|++++.+-.+. .++..+....+ ..|+++|+||+|..... .....+.. .......
T Consensus 219 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~ 294 (332)
T 2wkq_A 219 LRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDDK-DTIEKLKEKKLTPITYPQG 294 (332)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTCH-HHHHHHHHTTCCCCCHHHH
T ss_pred HHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhccccc-chhhhccccccccccHHHH
Confidence 234456788999999999854333332 34455555433 24999999999976541 11111111 0011123
Q ss_pred HHHHHhcCC-ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 170 KEILQLCDN-RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 170 ~~~~~~~~~-r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+....+. .++. .||+++.|+.+|++.+...+.
T Consensus 295 ~~~~~~~~~~~~~~------~Sa~~~~gi~~l~~~l~~~~~ 329 (332)
T 2wkq_A 295 LAMAKEIGAVKYLE------CSALTQRGLKTVFDEAIRAVL 329 (332)
T ss_dssp HHHHHHTTCSEEEE------CCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcEEEE------ecCCCCcCHHHHHHHHHHHHh
Confidence 344444443 3333 677889999999999886654
No 162
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.52 E-value=4e-14 Score=143.74 Aligned_cols=162 Identities=14% Similarity=0.108 Sum_probs=101.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccC--------------CC---------------CCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKAS--------------AG---------------SSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~--------------~~---------------~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++|+|||||+|.|++....... .. ..++|.......+.. .
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~ 243 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-H 243 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-S
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-C
Confidence 45689999999999999999999976321110 00 024555555555555 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..+.||||||+.+ +.......+..+|++|+|+|++.+ +.......+..+.. ++. .|+
T Consensus 244 ~~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-lgi---~~i 308 (611)
T 3izq_1 244 RANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-LGI---HNL 308 (611)
T ss_dssp SCEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-TTC---CEE
T ss_pred CceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-cCC---CeE
Confidence 78999999999765 344555667789999999999842 23334444443332 332 379
Q ss_pred EEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHH
Q 040649 141 IVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQL 200 (371)
Q Consensus 141 ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~L 200 (371)
|+|+||+|........++..... +..++..++...- .......||+++.|+.+|
T Consensus 309 IVVvNKiDl~~~~~~~~~ei~~~-----l~~~l~~~g~~~~-~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 309 IIAMNKMDNVDWSQQRFEEIKSK-----LLPYLVDIGFFED-NINWVPISGFSGEGVYKI 362 (611)
T ss_dssp EEEEECTTTTTTCHHHHHHHHHH-----HHHHHHHHTCCGG-GCEEEECCTTTCTTTSSC
T ss_pred EEEEecccccchhHHHHHHHHHH-----HHHHHHhhccccc-CccEEeeecccCCCcccc
Confidence 99999999876433344433332 5555555443100 000123677788888754
No 163
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.50 E-value=9e-14 Score=120.65 Aligned_cols=162 Identities=19% Similarity=0.160 Sum_probs=89.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAK 95 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~ 95 (371)
..+|+|+|.+|+|||||+|.++|... +.+...+.+.+ .....+.+ ++. .+.++||+|...... .
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~l~~~Dt~~~~~~~~--------~-- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGED--TYERTLMV-DGESATIILLDMWENKGENE--------W-- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTT--EEEEEEEE-TTEEEEEEEECCCCC----C--------T--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCcccccccee--EEEEEEEE-CCeEEEEEEEEeccCcchhh--------h--
Confidence 47999999999999999999997432 22211111112 22222333 444 457899999543100 0
Q ss_pred HHhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHH
Q 040649 96 CIGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQ 174 (371)
Q Consensus 96 ~~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~ 174 (371)
....++..+|++++|+|++++-+-.. ..++..+...... ...|+++|.||+|..........+ ...+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~~r~v~~~~---------~~~~a~ 142 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVRXREVSVSE---------GRAXAV 142 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGGGCCSCHHH---------HHHHHH
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhccccccHHH---------HHHHHH
Confidence 01222345699999999984322222 2233344443221 124999999999975321111111 112222
Q ss_pred hcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 175 LCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 175 ~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
..+..++ ..||+++.|+.++++.+...+.
T Consensus 143 ~~~~~~~------e~SA~~g~~v~~lf~~l~~~~~ 171 (192)
T 2cjw_A 143 VFDXKFI------ETSAAVQHNVKELFEGIVRQVR 171 (192)
T ss_dssp HTTCEEE------ECBTTTTBSHHHHHHHHHHHHH
T ss_pred HhCCceE------EeccccCCCHHHHHHHHHHHHH
Confidence 2333333 3688899999999999876654
No 164
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.50 E-value=1.6e-13 Score=119.49 Aligned_cols=161 Identities=17% Similarity=0.149 Sum_probs=95.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCc--EEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQ--VVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|||||||+|.|+|....... .+..+.......+.+ ++. .+.++||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 478999999999999999999987653221 112222222333444 554 567899999543211 1
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..++++++|+|+..+.+-.. ..++..+...... ..|+++|+||+|.......... ....+...
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~~ 139 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTD---------EARAFAEK 139 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCeEEEEEECcccccccCcCHH---------HHHHHHHH
Confidence 1223456799999999884433222 2233334333222 2499999999997532111111 12344444
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
.+. ..++ .|++++.++.++++.+...+..
T Consensus 140 ~~~--~~~d----~Sal~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 140 NNL--SFIE----TSALDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTC--EEEE----CCTTTCTTHHHHHHHHHHHHHH
T ss_pred cCC--eEEE----EeCCCCCCHHHHHHHHHHHHHH
Confidence 333 3333 5777889999999998866543
No 165
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.49 E-value=8.9e-14 Score=140.37 Aligned_cols=163 Identities=20% Similarity=0.188 Sum_probs=94.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccC------------CCCCccceeEEEEeEEee--C--CcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKAS------------AGSSAITKTCEMKTTVLK--D--GQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~------------~~~~~~t~~~~~~~~~~~--~--~~~i~liDTPG~~~ 81 (371)
..+|+|+|++|+|||||+++|++... .... ....++|.......+.+. + +..++||||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 47899999999999999999975211 0000 001234444333444442 2 25789999999876
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHh
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYL 161 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l 161 (371)
+ ..++...+. .+|++|+|+|++++.+......+..+... . .|+++|+||+|....+ .+...
T Consensus 84 F-------~~ev~~~l~----~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a~---~~~v~ 144 (599)
T 3cb4_D 84 F-------SYEVSRSLA----ACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAAD---PERVA 144 (599)
T ss_dssp G-------HHHHHHHHH----HCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC---HHHHH
T ss_pred H-------HHHHHHHHH----HCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCccccc---HHHHH
Confidence 3 223333333 45999999999877776666555544432 2 3999999999987552 22221
Q ss_pred cccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 162 GLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 162 ~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
. .+...++.. .+.....||+++.|+.+|++.+...++..
T Consensus 145 ~--------ei~~~lg~~---~~~vi~vSAktg~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 145 E--------EIEDIVGID---ATDAVRCSAKTGVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp H--------HHHHHTCCC---CTTCEEECTTTCTTHHHHHHHHHHHSCCC
T ss_pred H--------HHHHHhCCC---cceEEEeecccCCCchhHHHHHhhcCCCc
Confidence 1 222222221 01223468889999999999999887754
No 166
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.49 E-value=1.1e-13 Score=139.88 Aligned_cols=115 Identities=17% Similarity=0.204 Sum_probs=77.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee-----------------CCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK-----------------DGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~i~liDTPG~~~ 81 (371)
.++|+|+|++|+|||||+++|+|...... .+++.|.........+. ....++||||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~--e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASR--EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCccc--cCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 36899999999999999999997654221 11222222111111110 112589999999876
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLE 151 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~ 151 (371)
+... ....+..+|++|+|+|+++++.......+..+... . .|+++|+||+|...
T Consensus 83 F~~~-----------~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTL-----------RKRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH 136 (594)
T ss_dssp CTTS-----------BCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred HHHH-----------HHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence 5322 12345678999999999988888877777776642 2 39999999999864
No 167
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.48 E-value=9.4e-14 Score=132.35 Aligned_cols=123 Identities=13% Similarity=0.162 Sum_probs=84.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..+|+|||.|++|||||+|+|+|.... ....+++|..+....+.+ .+..+.++||||+.............+...+.
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt~~~~~--v~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~ 148 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLTGTESE--AAEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAVAR 148 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHHSBCCC--GGGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCCc--ccCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHHHH
Confidence 468999999999999999999997753 234566777777766666 88899999999998754333334455555555
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC-CCCeEEEEEeCCCCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK-IFDYMIVVFTGGDDL 150 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~-~~~~~ilv~tk~D~~ 150 (371)
. +|++++|+|+++|+. +...+..-...++.. ..+|.++++||.|..
T Consensus 149 ~----ad~il~vvD~~~p~~--~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 149 T----CNLLFIILDVNKPLH--HKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp H----CSEEEEEEETTSHHH--HHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred h----cCccccccccCccHH--HHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 4 499999999985543 233332222223322 235888999999963
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.48 E-value=1.7e-15 Score=149.60 Aligned_cols=160 Identities=14% Similarity=0.162 Sum_probs=100.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
.++|+++|++|+|||||+++|++...... ..+++|.....+.+.+ ++..++||||||+.++... ..
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~~ 69 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------RA 69 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------BC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------HH
Confidence 36899999999999999999987543221 1234444433344444 6678999999998765322 22
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
.....+|++++|+|++++........+..+... . .|+++++||+|....+...+...+... ..+...++.
T Consensus 70 ~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~~~~~v~~~l~~~-----~~~~~~~~~ 139 (501)
T 1zo1_I 70 RGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEADPDRVKNELSQY-----GILPEEWGG 139 (501)
T ss_dssp SSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTTCCCCTTCCCCCC-----CCCTTCCSS
T ss_pred HHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEeccccccCHHHHHHHHHHh-----hhhHHHhCC
Confidence 345678999999999876666666666555432 2 389999999998653212221111110 000011111
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
.+. ....||+++.|+.+|++.+..
T Consensus 140 ~~~----~v~vSAktG~gI~eLle~I~~ 163 (501)
T 1zo1_I 140 ESQ----FVHVSAKAGTGIDELLDAILL 163 (501)
T ss_dssp SCE----EEECCTTTCTTCTTHHHHTTT
T ss_pred Ccc----EEEEeeeeccCcchhhhhhhh
Confidence 111 123688899999999998764
No 169
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=2.5e-13 Score=119.83 Aligned_cols=120 Identities=10% Similarity=0.168 Sum_probs=73.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
...++|+|+|++|+|||||+|+|++......... ...+... .+ .+..+.++||||..... ..+..+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~-~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVS-QEPLSAA-----DY-DGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCC-SSCEEET-----TG-GGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeee-cCceEEE-----Ee-eCceEEEEECCCcHHHH-------HHHHHH
Confidence 3457999999999999999999998775322111 1111111 11 45578999999986421 112233
Q ss_pred HhhhcCCceEEEEEEeCC---CCCCHHHHHHHHHHHHH---hCCCCCCeEEEEEeCCCCCCC
Q 040649 97 IGMAKDGIHAVLLVFSVR---SRFSQEEEAAVHRLQTL---FGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~---~~~~~~~~~~l~~l~~~---~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+......+|++|||+|++ ..+......+...+... .... .|+++|+||+|....
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTA 135 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhccc
Confidence 333233479999999998 33433333333333221 1223 499999999998766
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.48 E-value=1.2e-13 Score=135.18 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=91.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-ccccC----------------------------CCCCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFKAS----------------------------AGSSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~~----------------------------~~~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++|+|||||+++|++.. .+... ....++|.......+.+ .
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~ 82 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-K 82 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-S
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-C
Confidence 345899999999999999999998541 11100 00123455444444554 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-------FSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..++||||||+.+ +...+...+..+|++|+|+|++++ ........+..+.. ++. .++
T Consensus 83 ~~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~-~~~---~~i 147 (435)
T 1jny_A 83 KYFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-MGL---DQL 147 (435)
T ss_dssp SCEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-TTC---TTC
T ss_pred CeEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 78899999999775 223344466788999999999854 22333434333332 332 278
Q ss_pred EEEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhcCC-----ceEeecCcchhhHhhHHhHH
Q 040649 141 IVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLCDN-----RWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 141 ilv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~~~-----r~~~f~~~~~~sa~~~~~i~ 198 (371)
++|+||+|.... +...++..... +..++..++. .+++ .||+++.++.
T Consensus 148 ivviNK~Dl~~~~~~~~~~~~~~~~-----i~~~~~~~~~~~~~~~~i~------iSA~~g~~v~ 201 (435)
T 1jny_A 148 IVAVNKMDLTEPPYDEKRYKEIVDQ-----VSKFMRSYGFNTNKVRFVP------VVAPSGDNIT 201 (435)
T ss_dssp EEEEECGGGSSSTTCHHHHHHHHHH-----HHHHHHHTTCCCTTCEEEE------CBTTTTBTTT
T ss_pred EEEEEcccCCCccccHHHHHHHHHH-----HHHHHHHcCCCcCCceEEE------eecccCcccc
Confidence 999999998763 11233333333 5666665542 2333 5667777775
No 171
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.48 E-value=1.1e-13 Score=139.46 Aligned_cols=164 Identities=18% Similarity=0.208 Sum_probs=98.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc-ccc-C-----------CCCCccceeEEEEeEEee--CC--cEEEEEeCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA-FKA-S-----------AGSSAITKTCEMKTTVLK--DG--QVVNVIDTPGLF 80 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~--~~--~~i~liDTPG~~ 80 (371)
...+|+++|++|+|||||+++|++... ... . ....++|.........+. ++ ..++||||||+.
T Consensus 5 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~ 84 (600)
T 2ywe_A 5 NVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHV 84 (600)
T ss_dssp GEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcH
Confidence 357999999999999999999975210 000 0 001233333222333331 22 478899999987
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHH
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~ 160 (371)
++ ..++... +..+|++|+|+|++++.+......+..+... . .|+++|+||+|....+ .+..
T Consensus 85 dF-------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a~---~~~v 145 (600)
T 2ywe_A 85 DF-------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSAD---VDRV 145 (600)
T ss_dssp GG-------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC---HHHH
T ss_pred hH-------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCccccC---HHHH
Confidence 63 2223333 3456999999999988777766655554432 2 3999999999987552 2211
Q ss_pred hcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhc
Q 040649 161 LGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKN 211 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~ 211 (371)
. ..+...++.. .+.....||+++.|+.+|++.+...++..
T Consensus 146 ~--------~el~~~lg~~---~~~vi~vSAktg~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 146 K--------KQIEEVLGLD---PEEAILASAKEGIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp H--------HHHHHTSCCC---GGGCEECBTTTTBSHHHHHHHHHHHSCCC
T ss_pred H--------HHHHHhhCCC---cccEEEEEeecCCCchHHHHHHHHhcccc
Confidence 1 2222222221 01223468889999999999998887754
No 172
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.47 E-value=8.7e-14 Score=139.71 Aligned_cols=164 Identities=14% Similarity=0.132 Sum_probs=94.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEE----eEEee---CCcEEEEEeCCCCCCCCcchHHHH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMK----TTVLK---DGQVVNVIDTPGLFDSSAESEYVS 90 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~i~liDTPG~~~~~~~~~~~~ 90 (371)
...+|+|+|.+|+|||||+|.++|...........+.+...... .+... .+..+.++||||........
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~---- 115 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASH---- 115 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTC----
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHH----
Confidence 45899999999999999999999877532211112222111100 11111 25689999999965432211
Q ss_pred HHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHH
Q 040649 91 KEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLK 170 (371)
Q Consensus 91 ~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~ 170 (371)
...+..+|++|+|+|++. . .....++..+....+ . .|+++|+||+|.........+ .+.
T Consensus 116 -------~~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~~v~~~---------~~~ 174 (535)
T 3dpu_A 116 -------QFFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSYNIEQK---------KIN 174 (535)
T ss_dssp -------HHHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTCCCCHH---------HHH
T ss_pred -------HHHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCcccccccCHH---------HHH
Confidence 112335799999999973 2 334556666766543 2 499999999998754211221 133
Q ss_pred HHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 171 EILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 171 ~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
..+...+.+++. .||+++.|+++|+..+...+....
T Consensus 175 ~~~~~~~~~~~~------vSA~~g~gi~eL~~~l~~~~~~~~ 210 (535)
T 3dpu_A 175 ERFPAIENRFHR------ISCKNGDGVESIAKSLKSAVLHPD 210 (535)
T ss_dssp HHCGGGTTCEEE------CCC-----CTTHHHHHHHHHTCTT
T ss_pred HHHHhcCCceEE------EecCcccCHHHHHHHHHHHHhccc
Confidence 344444544544 577888999999999998887643
No 173
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.46 E-value=2.2e-13 Score=136.62 Aligned_cols=119 Identities=17% Similarity=0.217 Sum_probs=85.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh---CCC---------------cccc--CCCCCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL---GRR---------------AFKA--SAGSSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~---g~~---------------~~~~--~~~~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
..++|+|+|+.++|||||..+|+ |.. ..+. .-...++|.......+.| .+..++|||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 35899999999999999999986 211 0000 011134555555566777 88999999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
|+.|+.. +..+.+.. +|++|+|+|+..+........++.+... .+ |.++++||+|....+
T Consensus 109 GHvDF~~-------Ev~raL~~----~DgAvlVvda~~GV~~qT~~v~~~a~~~---~l--p~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 109 GHQDFSE-------DTYRVLTA----VDSALVVIDAAKGVEAQTRKLMDVCRMR---AT--PVMTFVNKMDREALH 168 (548)
T ss_dssp CGGGCSH-------HHHHHHHS----CSEEEEEEETTTBSCHHHHHHHHHHHHT---TC--CEEEEEECTTSCCCC
T ss_pred CcHHHHH-------HHHHHHHh----cCceEEEeecCCCcccccHHHHHHHHHh---CC--ceEEEEecccchhcc
Confidence 9988633 34455444 4999999999989999988888887764 33 999999999987653
No 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.45 E-value=6.1e-13 Score=115.23 Aligned_cols=159 Identities=18% Similarity=0.162 Sum_probs=94.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcE--EEEEeCCCCCCCCcchHHHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQV--VNVIDTPGLFDSSAESEYVSKEIAKC 96 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--i~liDTPG~~~~~~~~~~~~~ei~~~ 96 (371)
..+|+|+|++|||||||+|.++|...... ....++.......+.+ ++.. +.++||||.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~--~~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLE--SKSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI----------- 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------
Confidence 46899999999999999999998775322 1222232333333444 5543 456999997643221
Q ss_pred HhhhcCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHh
Q 040649 97 IGMAKDGIHAVLLVFSVRSRFSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQL 175 (371)
Q Consensus 97 ~~~~~~~~d~vl~v~d~~~~~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~ 175 (371)
....+..++++++|+|.....+-.. ..++..+...... ..|+++|+||+|.......... ....+...
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~i~~v~nK~Dl~~~~~~~~~---------~a~~l~~~ 163 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS--NIVIMLVGNKSDLRHLRAVPTD---------EARAFAEK 163 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGGGCCSCHH---------HHHHHHHH
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccccccCHH---------HHHHHHHH
Confidence 1223456689999999874322111 1233333332222 2499999999997532111111 12334443
Q ss_pred cCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 176 CDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 176 ~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
.+ +..++ .|++++.++.++++.+.+.+
T Consensus 164 ~~--~~~ld----~Sald~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 164 NG--LSFIE----TSALDSTNVEAAFQTILTEI 190 (191)
T ss_dssp TT--CEEEE----CCTTTCTTHHHHHHHHHHHH
T ss_pred cC--CEEEE----EeCCCCCCHHHHHHHHHHHh
Confidence 33 33333 57788899999999887543
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.45 E-value=6e-13 Score=140.77 Aligned_cols=165 Identities=18% Similarity=0.173 Sum_probs=102.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc------ccc--------CCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA------FKA--------SAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~------~~~--------~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
..+..+|+++|++|+|||||++.|++... +.. .....++|.......+.. .+..+.||||||..+
T Consensus 293 ~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 293 TKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH
T ss_pred cCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH
Confidence 34568999999999999999999986410 000 001123343332222333 567899999999532
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEEEeCCCCCCCchhhHHHH
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVVFTGGDDLEDNEKTLEDY 160 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv~tk~D~~~~~~~~l~~~ 160 (371)
+...+...+..+|++|+|+|++++........+..+... +. | +|+|+||+|...+ ...++..
T Consensus 372 -----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-gI----P~IIVVINKiDLv~d-~e~le~i 434 (1289)
T 3avx_A 372 -----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-GV----PYIIVFLNKCDMVDD-EELLELV 434 (1289)
T ss_dssp -----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-TC----SCEEEEEECCTTCCC-HHHHHHH
T ss_pred -----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-CC----CeEEEEEeecccccc-hhhHHHH
Confidence 333444567789999999999977666666666665543 32 5 8999999998753 1222222
Q ss_pred hcccCCchHHHHHHhcC-----CceEeecCcchhhHhhH--------HhHHHHHHHHHHHHh
Q 040649 161 LGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRT--------EQVQQLLSLVNAVNV 209 (371)
Q Consensus 161 l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~--------~~i~~Ll~~i~~~~~ 209 (371)
... +..++...+ .++++ .||+++ .++.+|++.+...++
T Consensus 435 ~eE-----i~elLk~~G~~~~~vp~Ip------vSAktG~ng~~~w~eGI~eLleaL~~~Ip 485 (1289)
T 3avx_A 435 EME-----VRELLSQYDFPGDDTPIVR------GSALKALEGDAEWEAKILELAGFLDSYIP 485 (1289)
T ss_dssp HHH-----HHHHHHHTTSCTTTCCEEE------CCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred HHH-----HHHHHHhccccccceeEEE------EEeccCCCCCccccccchhhHhHHhhhcC
Confidence 222 455555544 23444 345554 678999999887665
No 176
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.45 E-value=5.4e-13 Score=129.05 Aligned_cols=170 Identities=14% Similarity=0.105 Sum_probs=98.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGM 99 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~ 99 (371)
..|+|+|++|||||||+|+|+|...... .....|.......+.+.+...++++||||+.+.......+...+..
T Consensus 158 ~~VgLVG~~gAGKSTLL~~Lsg~~~~i~--~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~L~~~fl~---- 231 (416)
T 1udx_A 158 ADVGLVGYPNAGKSSLLAAMTRAHPKIA--PYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKGLGLEFLR---- 231 (416)
T ss_dssp CSEEEECCGGGCHHHHHHHHCSSCCEEC--CCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCCSCHHHHH----
T ss_pred CEEEEECCCCCcHHHHHHHHHcCCcccc--CcccceecceeeEEEecCcceEEEEeccccccchhhhhhhhHHHHH----
Confidence 4689999999999999999999854221 1222333333333444223789999999987531110001111222
Q ss_pred hcCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEE-AAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDN 178 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~-~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~ 178 (371)
....++++|+|+|++ +-...+. .....+..+...-...|.++|+||+|.... ..+.. +...+...+.
T Consensus 232 ~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~---------l~~~l~~~g~ 299 (416)
T 1udx_A 232 HIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKA---------LADALAREGL 299 (416)
T ss_dssp HHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHH---------HHHHHHTTTS
T ss_pred HHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHH---------HHHHHHhcCC
Confidence 234679999999996 2111121 122222222100012499999999996632 22221 3333333333
Q ss_pred ceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcCC
Q 040649 179 RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNGG 213 (371)
Q Consensus 179 r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~~ 213 (371)
.++. +||.++.++.+|++.|...+.....
T Consensus 300 ~vi~------iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 300 AVLP------VSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp CEEE------CCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred eEEE------EECCCccCHHHHHHHHHHHHHhccc
Confidence 4443 5777889999999999998876543
No 177
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.45 E-value=5.8e-14 Score=138.17 Aligned_cols=154 Identities=17% Similarity=0.195 Sum_probs=93.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC-cccc-------------CCC---------------CCccceeEEEEeEEeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR-AFKA-------------SAG---------------SSAITKTCEMKTTVLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~-------------~~~---------------~~~~t~~~~~~~~~~~~~ 68 (371)
+..+|+++|++|+|||||+|.|++.. .+.. +.. ..++|.......+.. .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 45799999999999999999998641 1100 000 023454444444444 66
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCH-------HHHHHHHHHHHHhCCCCCCeEE
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQ-------EEEAAVHRLQTLFGKKIFDYMI 141 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~i 141 (371)
..+.||||||+.+ +...+...+..+|++|+|+|++.+... .....+..+.. .+. .+++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~-~~v---~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT-LGV---RQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH-TTC---CEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH-cCC---CeEE
Confidence 7899999999754 333344567789999999999843221 33333333332 332 2599
Q ss_pred EEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC-----CceEeecCcchhhHhhHHhHH
Q 040649 142 VVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-----NRWVLFDNKTKYEAKRTEQVQ 198 (371)
Q Consensus 142 lv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-----~r~~~f~~~~~~sa~~~~~i~ 198 (371)
+|+||+|....+...++..... +..++..++ .++++ .||+++.++.
T Consensus 150 vviNK~Dl~~~~~~~~~~i~~~-----~~~~l~~~g~~~~~~~~i~------vSA~~g~nv~ 200 (458)
T 1f60_A 150 VAVNKMDSVKWDESRFQEIVKE-----TSNFIKKVGYNPKTVPFVP------ISGWNGDNMI 200 (458)
T ss_dssp EEEECGGGGTTCHHHHHHHHHH-----HHHHHHHHTCCGGGCCEEE------CCTTTCBTTT
T ss_pred EEEEccccccCCHHHHHHHHHH-----HHHHHHHcCCCccCceEEE------eecccCcCcc
Confidence 9999999874322333333332 555555544 23333 4666666664
No 178
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.45 E-value=1.7e-13 Score=141.16 Aligned_cols=121 Identities=21% Similarity=0.254 Sum_probs=79.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHhC---CCccc----cCC---------CCCccceeEEEEeEEeeCCcEEEEEeCCC
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSILG---RRAFK----ASA---------GSSAITKTCEMKTTVLKDGQVVNVIDTPG 78 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~----~~~---------~~~~~t~~~~~~~~~~~~~~~i~liDTPG 78 (371)
+.....+|+|+|++|+|||||+|.|+. ..... .+. ...++|.......+.+ .+..++||||||
T Consensus 8 ~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTPG 86 (691)
T 1dar_A 8 DLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTPG 86 (691)
T ss_dssp CGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCCS
T ss_pred ccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECcC
Confidence 334568999999999999999999982 21100 000 0123444444444555 678999999999
Q ss_pred CCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 79 LFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 79 ~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+. ......++. .+|++|+|+|++.+.+......+..+... . .|+++|+||+|....
T Consensus 87 ~~df-------~~~~~~~l~----~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 87 HVDF-------TIEVERSMR----VLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGA 144 (691)
T ss_dssp STTC-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred ccch-------HHHHHHHHH----HCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccC
Confidence 8763 122333333 45999999999988887777776665542 2 399999999998755
No 179
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=138.46 Aligned_cols=136 Identities=21% Similarity=0.349 Sum_probs=80.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEe----------------------------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKT---------------------------------- 62 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~---------------------------------- 62 (371)
...++|+|+|.+|+|||||+|+|+|........+..+.|.......
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~ 142 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNR 142 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccccccc
Confidence 3457999999999999999999999876311111122221110000
Q ss_pred ---EEeeCC---cEEEEEeCCCCCCCCcchHHHHHH--HHHHHhhhcCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHhC
Q 040649 63 ---TVLKDG---QVVNVIDTPGLFDSSAESEYVSKE--IAKCIGMAKDGIHAVLLVFSVRS-RFSQEEEAAVHRLQTLFG 133 (371)
Q Consensus 63 ---~~~~~~---~~i~liDTPG~~~~~~~~~~~~~e--i~~~~~~~~~~~d~vl~v~d~~~-~~~~~~~~~l~~l~~~~~ 133 (371)
+.+ .+ ..+.||||||+.+..... .... +...+..++..+|++|+|+|++. .+...+..++..+...
T Consensus 143 ~~~~~~-~~~ll~~l~lIDTPG~~~~~~~~--~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~-- 217 (550)
T 2qpt_A 143 FMCAQL-PNQVLESISIIDTPGILSGAKQR--VSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH-- 217 (550)
T ss_dssp EEEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC--
T ss_pred ceEEec-cccccCCEEEEECcCCCCcchhH--HHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc--
Confidence 000 00 358999999998631110 0000 12222333446799999999985 3666666666555421
Q ss_pred CCCCCeEEEEEeCCCCCCCchhhHHHHhc
Q 040649 134 KKIFDYMIVVFTGGDDLEDNEKTLEDYLG 162 (371)
Q Consensus 134 ~~~~~~~ilv~tk~D~~~~~~~~l~~~l~ 162 (371)
..|+++|+||+|.... ..+.....
T Consensus 218 ---~~pvilVlNK~Dl~~~--~el~~~~~ 241 (550)
T 2qpt_A 218 ---EDKIRVVLNKADMVET--QQLMRVYG 241 (550)
T ss_dssp ---GGGEEEEEECGGGSCH--HHHHHHHH
T ss_pred ---CCCEEEEEECCCccCH--HHHHHHHH
Confidence 2489999999998865 44544433
No 180
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.44 E-value=6.1e-13 Score=137.07 Aligned_cols=119 Identities=24% Similarity=0.312 Sum_probs=79.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC---CCccccCCC-------------CCccceeEEEEeEEeeCCcEEEEEeCCCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG---RRAFKASAG-------------SSAITKTCEMKTTVLKDGQVVNVIDTPGLF 80 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g---~~~~~~~~~-------------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~ 80 (371)
....+|+|+|++|+|||||+|+|++ ......... ..++|.......+.+ .+..++||||||+.
T Consensus 8 ~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~~ 86 (693)
T 2xex_A 8 EKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGHV 86 (693)
T ss_dssp TTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCCS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCCc
Confidence 3458999999999999999999984 211000000 123343333444555 67899999999998
Q ss_pred CCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 81 DSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 81 ~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+... +...++. .+|++|+|+|+..+.+..+...+..+... . .|+++|+||+|....
T Consensus 87 df~~-------~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 87 DFTV-------EVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGA 142 (693)
T ss_dssp SCCH-------HHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTC
T ss_pred chHH-------HHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCcccc
Confidence 7421 2233333 35999999999988888877777766542 2 399999999998765
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.42 E-value=7.4e-15 Score=148.67 Aligned_cols=169 Identities=16% Similarity=0.163 Sum_probs=86.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcccc--------------C---------------CCCCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKA--------------S---------------AGSSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++|+|||||+|.|++...... + ....++|.......+.+ .
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~ 253 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-D 253 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-C
Confidence 3557899999999999999999974311000 0 00124455555544554 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC-----C--CHHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR-----F--SQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..++||||||+.+.... +...+..+|++|+|+|++.+ + .......+..+.. ++. .++
T Consensus 254 ~~~i~iiDTPGh~~f~~~-----------~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~-lgi---p~i 318 (592)
T 3mca_A 254 KKIYEIGDAPGHRDFISG-----------MIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA-LGI---SEI 318 (592)
T ss_dssp -----CCEEESSSEEEEE-----------CCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH-SSC---CCE
T ss_pred CeEEEEEECCChHHHHHH-----------HHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH-cCC---CeE
Confidence 678999999998753211 12334567999999999853 3 4455555555543 332 259
Q ss_pred EEEEeCCCCCCCchhhHHHHhcccCCchHHHHH-HhcCCc--eEeecCcchhhHhhHHhHH--------------HHHHH
Q 040649 141 IVVFTGGDDLEDNEKTLEDYLGLECPKPLKEIL-QLCDNR--WVLFDNKTKYEAKRTEQVQ--------------QLLSL 203 (371)
Q Consensus 141 ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~-~~~~~r--~~~f~~~~~~sa~~~~~i~--------------~Ll~~ 203 (371)
|+|+||+|....+...+...... +..++ ..++.. -++ ....||+++.|+. .|++.
T Consensus 319 IvviNKiDl~~~~~~~~~~i~~e-----l~~~l~~~~g~~~~~~~---ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~ 390 (592)
T 3mca_A 319 VVSVNKLDLMSWSEDRFQEIKNI-----VSDFLIKMVGFKTSNVH---FVPISAISGTNLIQKDSSDLYKWYKGPTLLSA 390 (592)
T ss_dssp EEEEECGGGGTTCHHHHHHHHHH-----HHHHHTTTSCCCGGGEE---EEEECSSSCSSSCSCCCCGGGGTCCSCCHHHH
T ss_pred EEEEeccccccccHHHHHHHHHH-----HHHHHHHhhCCCccceE---EEEEecccCcccccccccccccccchHHHHHH
Confidence 99999999875332444433333 45555 333321 111 1236777888887 78888
Q ss_pred HHHHHh
Q 040649 204 VNAVNV 209 (371)
Q Consensus 204 i~~~~~ 209 (371)
|..+++
T Consensus 391 l~~~~p 396 (592)
T 3mca_A 391 LDQLVP 396 (592)
T ss_dssp HHTSCC
T ss_pred HHhhcc
Confidence 876654
No 182
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.40 E-value=1.3e-12 Score=126.05 Aligned_cols=91 Identities=15% Similarity=0.111 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEe--------------------eC---CcEEEEEeC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVL--------------------KD---GQVVNVIDT 76 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~--------------------~~---~~~i~liDT 76 (371)
.+|+|+|.+|+|||||+|+|+|.....+ ..+++|.........+ .+ ...+.++||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~--~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt 78 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIA--NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV 78 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence 3799999999999999999999873211 1222332222211100 01 246899999
Q ss_pred CCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC
Q 040649 77 PGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR 116 (371)
Q Consensus 77 PG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~ 116 (371)
||+...... .+.+.......+..+|++++|+|++.+
T Consensus 79 pG~~~~a~~----~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 79 AGLVPGAHE----GRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp C-------------------CCCSSTTCSEEEEEEETTCC
T ss_pred CCcccchhh----hhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 998753111 111222222456789999999999753
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.40 E-value=3.2e-12 Score=131.83 Aligned_cols=119 Identities=21% Similarity=0.268 Sum_probs=78.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-cccc------CCC---------CCccceeEEEEeEEeeCC-------cEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFKA------SAG---------SSAITKTCEMKTTVLKDG-------QVVNV 73 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~~------~~~---------~~~~t~~~~~~~~~~~~~-------~~i~l 73 (371)
....+|+|+|+.|+|||||++.|+... .+.. +.. ..++|.......+.+ .+ ..++|
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 345899999999999999999996421 1100 000 123444444444444 44 78999
Q ss_pred EeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 74 IDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 74 iDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|||||..++ ..+... ++..+|++|+|+|++.+........+..+... . .|+++|+||+|....
T Consensus 87 iDTPG~~df-------~~~~~~----~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 87 IDTPGHVDF-------TIEVER----SMRVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGA 149 (704)
T ss_pred EeCCCccch-------HHHHHH----HHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCcccc
Confidence 999998763 122333 33456999999999977766666665554432 2 399999999998754
No 184
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.40 E-value=2e-13 Score=136.34 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=76.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc--CC------------------CCCccceeEEEEeEEeeCCcEEEEEeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA--SA------------------GSSAITKTCEMKTTVLKDGQVVNVIDTP 77 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~--~~------------------~~~~~t~~~~~~~~~~~~~~~i~liDTP 77 (371)
...+|+|+|++|+|||||++.|++...... +. ...++|.......+.+ .+..++|||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 457999999999999999999985321000 00 0112222222333444 67899999999
Q ss_pred CCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 78 GLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 78 G~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|..+... . ...++..+|++|+|+|++.+........+..+.. .. .|+++|+||+|....
T Consensus 91 G~~df~~-------~----~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~---~~--ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSE-------D----TYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRL---RD--TPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCH-------H----HHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTT---TT--CCEEEEEECTTSCCS
T ss_pred CChhHHH-------H----HHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHH---cC--CCEEEEEcCcCCccc
Confidence 9876421 1 2234556799999999997777666555544432 12 389999999998755
No 185
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.39 E-value=1.4e-12 Score=119.41 Aligned_cols=153 Identities=16% Similarity=0.235 Sum_probs=92.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC-----ccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcch---HH
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSS-----AITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAES---EY 88 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~-----~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~~---~~ 88 (371)
.+++|+|++|+|||||+|+|+|...+.++.... ..+.......+... -...++++|+||++...... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 689999999999999999999987655432110 01111111111111 12368999999998643211 11
Q ss_pred HH----HHHHHHHhh----------hcCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCc
Q 040649 89 VS----KEIAKCIGM----------AKDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDN 153 (371)
Q Consensus 89 ~~----~ei~~~~~~----------~~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~ 153 (371)
+. ..+...... ....+++++|++|.. +++++.+..++..+... .++++|+||+|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~- 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL- 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH-
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH-
Confidence 11 112222211 123468889999854 78999998777777643 399999999999876
Q ss_pred hhhHHHHhcccCCchHHHHHHhcCCceEeecC
Q 040649 154 EKTLEDYLGLECPKPLKEILQLCDNRWVLFDN 185 (371)
Q Consensus 154 ~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~ 185 (371)
..+..+... +...+...+..++.|..
T Consensus 156 -~e~~~~k~~-----i~~~l~~~~i~i~~~~~ 181 (270)
T 3sop_A 156 -EEKSEFKQR-----VRKELEVNGIEFYPQKE 181 (270)
T ss_dssp -HHHHHHHHH-----HHHHHHHTTCCCSSCSC
T ss_pred -HHHHHHHHH-----HHHHHHHcCccccCCCC
Confidence 566666554 66667777777776643
No 186
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=4e-12 Score=118.21 Aligned_cols=173 Identities=17% Similarity=0.139 Sum_probs=80.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-----CccceeEEEEeEEee---CCcEEEEEeCCCCCCCCcc---h
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-----SAITKTCEMKTTVLK---DGQVVNVIDTPGLFDSSAE---S 86 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-----~~~t~~~~~~~~~~~---~~~~i~liDTPG~~~~~~~---~ 86 (371)
-..+|+|+|++|+|||||+|+|+|...++..... ...|.......+... ....++++||||+++.... .
T Consensus 17 ~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~ 96 (301)
T 2qnr_A 17 FEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCF 96 (301)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------C
T ss_pred CCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHH
Confidence 3478999999999999999999997443321110 001111111112211 1247899999999543110 0
Q ss_pred HHHHHHH----HHHHhhh---------cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 87 EYVSKEI----AKCIGMA---------KDGIHAVLLVFSVR-SRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 87 ~~~~~ei----~~~~~~~---------~~~~d~vl~v~d~~-~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+...+ ..++... ...++++||+++.+ .++...+.. .++.+. .. .++++|+||.|....
T Consensus 97 ~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~---~l~~l~-~~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 97 KTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVA---FMKAIH-NK--VNIVPVIAKADTLTL 170 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHH---HHHHHT-TT--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHH---HHHHHH-hc--CCEEEEEEeCCCCCH
Confidence 0111111 1222111 12356677777654 357777643 344332 22 389999999998754
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
..+..+... +...+...+..++. .||+++ ++++++..+...+..
T Consensus 171 --~e~~~~~~~-----~~~~~~~~~~~~~e------~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 171 --KERERLKKR-----ILDEIEEHNIKIYH------LPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp --HHHHHHHHH-----HHHHHHHTTCCCCC------CC----------CHHHHHHHHT
T ss_pred --HHHHHHHHH-----HHHHHHHcCCeEEe------cCCccc-cccHHHHHHHHHhhc
Confidence 333322222 45556655554444 466777 899988887766543
No 187
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.37 E-value=6.8e-13 Score=130.84 Aligned_cols=161 Identities=17% Similarity=0.164 Sum_probs=84.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC-ccc-------------cC---------------CCCCccceeEEEEeEEeeC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR-AFK-------------AS---------------AGSSAITKTCEMKTTVLKD 67 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~-~~~-------------~~---------------~~~~~~t~~~~~~~~~~~~ 67 (371)
.+..+|+++|++++|||||++.|++.. .+. .+ ....++|.......+.+ +
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~ 119 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-E 119 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-S
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-C
Confidence 345799999999999999999997421 000 00 00124454444444555 6
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHhCCCCCCeE
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFS-------QEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~-------~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
+..++||||||+.+. ...+...+..+|++|+|+|++.+.. ......+..+.. .+. .++
T Consensus 120 ~~~~~iiDtPGh~~f-----------~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~-~~v---p~i 184 (467)
T 1r5b_A 120 HRRFSLLDAPGHKGY-----------VTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART-QGI---NHL 184 (467)
T ss_dssp SEEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH-TTC---SSE
T ss_pred CeEEEEEECCCcHHH-----------HHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH-cCC---CEE
Confidence 788999999997642 2223344567899999999985421 223333333332 332 149
Q ss_pred EEEEeCCCCCCC--chhhHHHHhcccCCchHHHHHHhc-CCc---eEeecCcchhhHhhHHhHHHHH
Q 040649 141 IVVFTGGDDLED--NEKTLEDYLGLECPKPLKEILQLC-DNR---WVLFDNKTKYEAKRTEQVQQLL 201 (371)
Q Consensus 141 ilv~tk~D~~~~--~~~~l~~~l~~~~~~~l~~~~~~~-~~r---~~~f~~~~~~sa~~~~~i~~Ll 201 (371)
++|+||+|.... +...++..... +..++... +-. -++| ...||+++.++.+++
T Consensus 185 ivviNK~Dl~~~~~~~~~~~~i~~e-----~~~~l~~~~g~~~~~~~~~---i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 185 VVVINKMDEPSVQWSEERYKECVDK-----LSMFLRRVAGYNSKTDVKY---MPVSAYTGQNVKDRV 243 (467)
T ss_dssp EEEEECTTSTTCSSCHHHHHHHHHH-----HHHHHHHHHCCCHHHHEEE---EECBTTTTBTTSSCC
T ss_pred EEEEECccCCCccccHHHHHHHHHH-----HHHHHHHhcCCCccCCceE---Eeccccccccccccc
Confidence 999999998642 11223333322 44455443 321 1111 235677777776643
No 188
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.37 E-value=2.6e-12 Score=131.93 Aligned_cols=116 Identities=25% Similarity=0.248 Sum_probs=80.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc--cCC-----C---------CCccceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK--ASA-----G---------SSAITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~--~~~-----~---------~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
...+|+|+|++|+|||||++.|++..... .+. . ..++|.......+.+ .+..++|+||||..+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccc
Confidence 45799999999999999999998533210 000 0 013344444444444 677899999999765
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL 150 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~ 150 (371)
. ......++. .+|++++|+|+..++.......+..+... . .|+++|+||+|..
T Consensus 87 f-------~~~~~~~l~----~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 F-------VGEIRGALE----AADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG 139 (665)
T ss_dssp G-------HHHHHHHHH----HCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred h-------HHHHHHHHh----hcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence 2 223333333 45999999999888888777777776642 2 3999999999987
No 189
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.36 E-value=2.4e-12 Score=116.83 Aligned_cols=87 Identities=16% Similarity=0.091 Sum_probs=52.6
Q ss_pred CceEEEEEEeCCCC--CCHHH-HHHHHHHHHH-hCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhc-C
Q 040649 103 GIHAVLLVFSVRSR--FSQEE-EAAVHRLQTL-FGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLC-D 177 (371)
Q Consensus 103 ~~d~vl~v~d~~~~--~~~~~-~~~l~~l~~~-~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~-~ 177 (371)
++|++|+|+|++++ .+-.. ..++..+... .... .|+++|+||+|+... ..++ . ...+.... +
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~--~~v~----~-----~~~~~~~~~~ 228 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVE--RYIR----D-----AHTFALSKKN 228 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCH--HHHH----H-----HHHHHHTSSS
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEccccccc--HHHH----H-----HHHHHHhcCC
Confidence 58999999999864 34332 2334444433 1122 399999999997533 2221 1 23333321 2
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
..++ ..||+++.|+.++++.+...+
T Consensus 229 ~~~~------e~SAk~g~gv~elf~~l~~~l 253 (255)
T 3c5h_A 229 LQVV------ETSARSNVNVDLAFSTLVQLI 253 (255)
T ss_dssp CCEE------ECBTTTTBSHHHHHHHHHHHH
T ss_pred CeEE------EEECCCCCCHHHHHHHHHHHh
Confidence 2333 368888999999999987655
No 190
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.35 E-value=2.3e-12 Score=122.34 Aligned_cols=114 Identities=15% Similarity=0.094 Sum_probs=59.0
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.|+||||+.+. .. . ....+|++++|+|+..+.. ...+.. ..+. .|.++|+||
T Consensus 165 ~~~~~iliDT~Gi~~~---~~-------~----l~~~~d~vl~V~d~~~~~~---~~~i~~--~il~----~~~ivVlNK 221 (349)
T 2www_A 165 AGYDIILIETVGVGQS---EF-------A----VADMVDMFVLLLPPAGGDE---LQGIKR--GIIE----MADLVAVTK 221 (349)
T ss_dssp TTCSEEEEECCCC--C---HH-------H----HHTTCSEEEEEECCC-----------------CC----SCSEEEECC
T ss_pred CCCCEEEEECCCcchh---hh-------h----HHhhCCEEEEEEcCCcchh---HHHhHH--HHHh----cCCEEEEee
Confidence 5667899999998743 11 1 1346799999999874321 111111 1221 388999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCce-EeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRW-VLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~-~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+|.... ......+.. +...+....... .........|++++.|+.+|++.|...+..
T Consensus 222 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 222 SDGDLI--VPARRIQAE-----YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp CSGGGH--HHHHHHHHH-----HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred ecCCCc--hhHHHHHHH-----HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 997632 121111111 111121111000 000111236888999999999999987754
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.33 E-value=9.3e-13 Score=125.41 Aligned_cols=114 Identities=18% Similarity=0.103 Sum_probs=65.6
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.||||||+... . . .....+|++|+|+|....... ..+...+ ...|+++|+||
T Consensus 170 ~~~~~iiiDTpGi~~~----~------~----~~~~~aD~vl~V~d~~~~~~~------~~l~~~~---~~~p~ivVlNK 226 (355)
T 3p32_A 170 AGFDVILIETVGVGQS----E------V----AVANMVDTFVLLTLARTGDQL------QGIKKGV---LELADIVVVNK 226 (355)
T ss_dssp TTCCEEEEEECSCSSH----H------H----HHHTTCSEEEEEEESSTTCTT------TTCCTTS---GGGCSEEEEEC
T ss_pred CCCCEEEEeCCCCCcH----H------H----HHHHhCCEEEEEECCCCCccH------HHHHHhH---hhcCCEEEEEC
Confidence 4568999999997641 1 0 112567999999998632111 1111100 11389999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceEee-cCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLF-DNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f-~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+|.... ......... +...+...+.....+ .+....||+++.|+++|++.|...+..
T Consensus 227 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 227 ADGEHH--KEARLAARE-----LSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp CCGGGH--HHHHHHHHH-----HHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred CCCcCh--hHHHHHHHH-----HHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 997643 233322222 333333222100000 112336888999999999999988765
No 192
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.33 E-value=8.5e-13 Score=134.86 Aligned_cols=117 Identities=21% Similarity=0.271 Sum_probs=85.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCccc----cCCCC---------CccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFK----ASAGS---------SAITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~---g~~~~~----~~~~~---------~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
.++|+|+|+.++|||||..+|+ |...-. .+... .++|.......+.| .+..++||||||+.|+
T Consensus 2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHH
Confidence 3689999999999999999885 322110 00000 14555555556667 8889999999999985
Q ss_pred CcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 83 SAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 83 ~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
..+....+. -+|++|+|+|+..+........++.+... .+ |.++++||+|....
T Consensus 81 -------~~Ev~raL~----~~DgavlVVDa~~GV~~qT~~v~~~a~~~---~l--p~i~~INKmDr~~a 134 (638)
T 3j25_A 81 -------LAEVYRSLS----VLDGAILLISAKDGVQAQTRILFHALRKM---GI--PTIFFINKIDQNGI 134 (638)
T ss_dssp -------HHHHHHHHT----TCSEEECCEESSCTTCSHHHHHHHHHHHH---TC--SCEECCEECCSSSC
T ss_pred -------HHHHHHHHH----HhCEEEEEEeCCCCCcHHHHHHHHHHHHc---CC--CeEEEEeccccccC
Confidence 233444444 45999999999989988888888888765 33 88999999998755
No 193
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.31 E-value=4.5e-12 Score=119.98 Aligned_cols=113 Identities=11% Similarity=0.106 Sum_probs=63.0
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
.+..+.||||||+.+. .. . ....+|++++|+|++.+.. ...+.. ...+ .|.++|+||
T Consensus 147 ~~~~i~liDTpG~~~~----~~---~-------~~~~aD~vl~Vvd~~~~~~---~~~l~~--~~~~----~p~ivv~NK 203 (341)
T 2p67_A 147 AGYDVVIVETVGVGQS----ET---E-------VARMVDCFISLQIAGGGDD---LQGIKK--GLME----VADLIVINK 203 (341)
T ss_dssp TTCSEEEEEEECCTTH----HH---H-------HHTTCSEEEEEECC---------CCCCH--HHHH----HCSEEEECC
T ss_pred cCCCEEEEeCCCccch----HH---H-------HHHhCCEEEEEEeCCccHH---HHHHHH--hhhc----ccCEEEEEC
Confidence 4678999999998752 11 1 1357799999999863211 001110 0111 288999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcCCceE-eecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCDNRWV-LFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~-~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+|.... ..+...+.. ++..+...+.... .+......|++++.|+++|++.|...+.
T Consensus 204 ~Dl~~~--~~~~~~~~~-----l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 204 DDGDNH--TNVAIARHM-----YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp CCTTCH--HHHHHHHHH-----HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred CCCCCh--HHHHHHHHH-----HHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 997643 233322222 3333332221000 0011234688899999999999988765
No 194
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.27 E-value=4.1e-12 Score=118.39 Aligned_cols=119 Identities=13% Similarity=0.093 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhh
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMA 100 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~ 100 (371)
+|+++|.+|+|||||++.+.+...+.. ....+.|.......+ .....+.||||||......+. + ....+
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~------l--~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS------Y--DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS------H--HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh------h--hhhhh
Confidence 489999999999999999886643221 111222322222222 134679999999976542110 0 12334
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHH--hCCCCCCeEEEEEeCCCCCCC
Q 040649 101 KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTL--FGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 101 ~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~--~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+.+++++|||+|+++++...-..+..++... ..+. .|+++|.||+|+..+
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~--ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS--INIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTT--CEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCC--CcEEEEEECcccCch
Confidence 6788999999999966433333332333221 1223 399999999998755
No 195
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.20 E-value=4e-11 Score=113.22 Aligned_cols=107 Identities=14% Similarity=0.096 Sum_probs=60.2
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHhCCCCCCeEEEEEe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEA-AVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~-~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.+..+.||||||+... ... ....+|++++|+|+..+. +.. +...+... +.++|+|
T Consensus 146 ~~~~~iliDT~Gi~~~---~~~-----------v~~~~d~vl~v~d~~~~~---~~~~i~~~i~~~-------~~ivvlN 201 (337)
T 2qm8_A 146 AGFDVILVETVGVGQS---ETA-----------VADLTDFFLVLMLPGAGD---ELQGIKKGIFEL-------ADMIAVN 201 (337)
T ss_dssp TTCCEEEEEECSSSSC---HHH-----------HHTTSSEEEEEECSCC---------CCTTHHHH-------CSEEEEE
T ss_pred CCCCEEEEECCCCCcc---hhh-----------HHhhCCEEEEEEcCCCcc---cHHHHHHHHhcc-------ccEEEEE
Confidence 4678999999999863 110 124679999999875221 111 00111121 6678889
Q ss_pred CCCCCCCchhhHHHHhcccCCchHHHHHHhcC-------CceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 146 GGDDLEDNEKTLEDYLGLECPKPLKEILQLCD-------NRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 146 k~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~-------~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
|+|..... ......... +...+.... .+++ ..|+.++.|+++|++.|.....
T Consensus 202 K~Dl~~~~-~~s~~~~~~-----l~~a~~l~~~~~~~~~~~vl------~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 202 KADDGDGE-RRASAAASE-----YRAALHILTPPSATWTPPVV------TISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp CCSTTCCH-HHHHHHHHH-----HHHHHTTBCCSBTTBCCCEE------EEBTTTTBSHHHHHHHHHHHHH
T ss_pred chhccCch-hHHHHHHHH-----HHHHHHhccccccCCCCCEE------EEeCCCCCCHHHHHHHHHHHHH
Confidence 99975431 111111111 222222111 2222 2688889999999999988765
No 196
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.19 E-value=7.4e-11 Score=122.04 Aligned_cols=120 Identities=26% Similarity=0.299 Sum_probs=83.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh---CCC------c-----ccc--CCCCCccceeEEEEeEEee------CCcEEEEE
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL---GRR------A-----FKA--SAGSSAITKTCEMKTTVLK------DGQVVNVI 74 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~---g~~------~-----~~~--~~~~~~~t~~~~~~~~~~~------~~~~i~li 74 (371)
+..++|+|+|+.++|||||..+|+ |.. . .++ .....++|......++.|. ++..++||
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 456899999999999999999886 210 0 000 0011245554555555552 24689999
Q ss_pred eCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 75 DTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 75 DTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
||||+.|+ ..+....+..+ |++|+|+|+..+........++..... .+ |.++|+||+|....
T Consensus 91 DTPGHvDF-------~~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~---~l--p~i~~iNKiDr~~a 152 (709)
T 4fn5_A 91 DTPGHVDF-------TIEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKY---GV--PRIVYVNKMDRQGA 152 (709)
T ss_dssp CCCSCTTC-------HHHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHH---TC--CEEEEEECSSSTTC
T ss_pred eCCCCccc-------HHHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHc---CC--CeEEEEccccccCc
Confidence 99999986 34455666655 999999999999999988888887765 33 99999999998755
No 197
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.19 E-value=5.2e-11 Score=112.79 Aligned_cols=90 Identities=16% Similarity=0.103 Sum_probs=54.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCCCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGLFDSS 83 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~~~~~ 83 (371)
.+|+|+|.+|+|||||+|+|+|...... ..+++|..+....+.+++ +..+.++||||+....
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~--~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAA--NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCccc--CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 5899999999999999999998763211 122233333322233311 2478999999998642
Q ss_pred cchHHHHHHHHHHHhhhcCCceEEEEEEeCCC
Q 040649 84 AESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS 115 (371)
Q Consensus 84 ~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~ 115 (371)
.....+...+.. .+..+|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~----~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLA----NIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHH----HHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHH----HHHhcCeEEEEEecCC
Confidence 111111112222 2456799999999873
No 198
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.18 E-value=5.1e-11 Score=113.46 Aligned_cols=90 Identities=19% Similarity=0.175 Sum_probs=54.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEee--------------------CCcEEEEEeCCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLK--------------------DGQVVNVIDTPGL 79 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~i~liDTPG~ 79 (371)
.+|+++|.||+|||||+|+|+|...... ..+.+|..+......++ .+..+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~--~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAA--NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCS--SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCccc--CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 4799999999999999999998652111 11222222222111110 2357899999999
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS 115 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~ 115 (371)
.........+...+... +..+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~----ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAH----IREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHH----HHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHH----HHhCCEEEEEEECCC
Confidence 86432211222333333 345699999999873
No 199
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.14 E-value=4.9e-11 Score=125.34 Aligned_cols=117 Identities=21% Similarity=0.265 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC--------------CCCccceeEEEEeEEee---------------CC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA--------------GSSAITKTCEMKTTVLK---------------DG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~--------------~~~~~t~~~~~~~~~~~---------------~~ 68 (371)
...+|+|+|++|+|||||+++|++........ ...++|.......+.+. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 35789999999999999999998642110000 01122322222222231 15
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..++||||||+.+... +... ++..+|++|+|+|+.++.+......+..+... . .|+++|+||+|
T Consensus 98 ~~i~liDTPG~~df~~-------~~~~----~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~---~--~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFSS-------EVTA----ALRVTDGALVVVDTIEGVCVQTETVLRQALGE---R--IKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSCH-------HHHH----HHHTCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CEEEEEEECHH
T ss_pred ceEEEEECcCchhhHH-------HHHH----HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCeEEEEECCC
Confidence 6799999999987532 1222 33456999999999988887776655544421 2 39999999999
Q ss_pred CC
Q 040649 149 DL 150 (371)
Q Consensus 149 ~~ 150 (371)
..
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 75
No 200
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.14 E-value=1.7e-10 Score=104.59 Aligned_cols=131 Identities=14% Similarity=0.040 Sum_probs=66.8
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHH-HHHH-HHHhCCCCCCeEEEEEeC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAA-VHRL-QTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~-l~~l-~~~~~~~~~~~~ilv~tk 146 (371)
..+.||||||..+. .....+...+...+.. +++++|+|+....+..+... .... ....... .|+++|+||
T Consensus 109 ~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~iv~NK 180 (262)
T 1yrb_A 109 NDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLG--ATTIPALNK 180 (262)
T ss_dssp CSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHT--SCEEEEECC
T ss_pred CCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccC--CCeEEEEec
Confidence 37899999997531 0111111111223345 89999999864444444221 1111 1111112 389999999
Q ss_pred CCCCCCch-hhHHHHhcccCCchHHH-----------------HHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHH
Q 040649 147 GDDLEDNE-KTLEDYLGLECPKPLKE-----------------ILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVN 208 (371)
Q Consensus 147 ~D~~~~~~-~~l~~~l~~~~~~~l~~-----------------~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~ 208 (371)
+|...... ..+.+++.. ....... ++...+.. ......|++++.|+++|++.+...+
T Consensus 181 ~D~~~~~~~~~~~~~l~~-~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~SA~~~~gi~~l~~~i~~~~ 255 (262)
T 1yrb_A 181 VDLLSEEEKERHRKYFED-IDYLTARLKLDPSMQGLMAYKMCSMMTEVLPP----VRVLYLSAKTREGFEDLETLAYEHY 255 (262)
T ss_dssp GGGCCHHHHHHHHHHHHC-HHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCC----CCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHhC-hHHHHHHHhccccccchhHhHHHHHHHHhcCc----ccceEEEecCcccHHHHHHHHHHHh
Confidence 99775411 112222211 0000011 11222211 0123367888999999999999887
Q ss_pred hhcC
Q 040649 209 VKNG 212 (371)
Q Consensus 209 ~~~~ 212 (371)
...+
T Consensus 256 ~~~~ 259 (262)
T 1yrb_A 256 CTCG 259 (262)
T ss_dssp HHHC
T ss_pred cccc
Confidence 7543
No 201
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.11 E-value=3.9e-10 Score=111.36 Aligned_cols=164 Identities=14% Similarity=0.178 Sum_probs=93.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCccccCCCC--C-------------ccceeEEEEe----------EE-e
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL------GRRAFKASAGS--S-------------AITKTCEMKT----------TV-L 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~~~~--~-------------~~t~~~~~~~----------~~-~ 65 (371)
+..+|+|+|++|+||||+++.|+ |..+....... + +++....... .. +
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999999 76542111100 0 0110000000 00 0
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe-EEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY-MIVV 143 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~-~ilv 143 (371)
..+..++||||||.... ......++...... ..+|.+++|+|+..+.. .......+... .| .++|
T Consensus 180 ~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gvV 246 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASVI 246 (504)
T ss_dssp HHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCEE
T ss_pred HHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEEE
Confidence 15668999999998753 22344444433331 26899999999985543 33333444332 16 4899
Q ss_pred EeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc------------eEeecCcchhhHhhHHh-HHHHHHHHHHH
Q 040649 144 FTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR------------WVLFDNKTKYEAKRTEQ-VQQLLSLVNAV 207 (371)
Q Consensus 144 ~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r------------~~~f~~~~~~sa~~~~~-i~~Ll~~i~~~ 207 (371)
+||+|.....+..+. +...++.+ +.+|.+....|+..+.+ +..|++.+...
T Consensus 247 lNK~D~~~~~g~~l~-------------~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 247 VTKLDGHAKGGGALS-------------AVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp EECTTSCCCCTHHHH-------------HHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred EeCCccccchHHHHH-------------HHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 999997744211121 11122222 23344445567777888 98999888765
No 202
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.07 E-value=1.2e-11 Score=118.20 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=70.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc-----cCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK-----ASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~-----~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+|+++|.+|+|||||+|+|+|..... .....+++|..... +.+ +..+.++||||+.+..........+.
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 235 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLID--IPL--DEESSLYDTPGIINHHQMAHYVGKQS 235 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEE--EES--SSSCEEEECCCBCCTTSGGGGSCHHH
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEE--EEe--cCCeEEEeCCCcCcHHHHHHHhhHHH
Confidence 3689999999999999999999864211 11122344433332 222 22388999999987643222222222
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+. ....++.++|+++....+.......+..+. +.. .|+++|+||+|.+..
T Consensus 236 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~---~~~--~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 236 LKLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVS---GGR--RAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHhc-cccccCceEEEEcCCCEEEEcceEEEEEec---CCC--ceEEEEecCcccccc
Confidence 22221 235678999999874211111111122221 222 399999999998755
No 203
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.03 E-value=2.5e-10 Score=100.68 Aligned_cols=155 Identities=13% Similarity=0.079 Sum_probs=81.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc--c---CCCCCccce----------e-EEEEe---EE-----------eeCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK--A---SAGSSAITK----------T-CEMKT---TV-----------LKDG 68 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~--~---~~~~~~~t~----------~-~~~~~---~~-----------~~~~ 68 (371)
.++|+|+|++|+|||||+|.|++..... . ...+ +.+. . ..... +. ...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~-~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV-VSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC-CCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC-CCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4789999999999999999998642100 0 0000 0000 0 00000 00 1134
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.+|||||...... ......+++++|+|+....... ..... .++ .|+++|+||+|
T Consensus 109 ~d~iiidt~G~~~~~~--------------~~~~~~~~~i~vvd~~~~~~~~----~~~~~-~~~----~~~iiv~NK~D 165 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV--------------DFDLGENYRVVMVSVTEGDDVV----EKHPE-IFR----VADLIVINKVA 165 (221)
T ss_dssp CSEEEEEEEEBSSGGG--------------GCCCSCSEEEEEEEGGGCTTHH----HHCHH-HHH----TCSEEEEECGG
T ss_pred CCEEEEeCCCCCCCCc--------------hhccccCcEEEEEeCCCcchhh----hhhhh-hhh----cCCEEEEeccc
Confidence 4678888888522100 0112457899999987443211 11111 122 38999999999
Q ss_pred CCCCchhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 149 DLEDNEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 149 ~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
............ ...+...+..... ...|++++.|+.+|++.+...+..
T Consensus 166 l~~~~~~~~~~~---------~~~~~~~~~~~~i----~~~Sa~~g~gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 166 LAEAVGADVEKM---------KADAKLINPRAKI----IEMDLKTGKGFEEWIDFLRGILNV 214 (221)
T ss_dssp GHHHHTCCHHHH---------HHHHHHHCTTSEE----EECBTTTTBTHHHHHHHHHHHHC-
T ss_pred CCcchhhHHHHH---------HHHHHHhCCCCeE----EEeecCCCCCHHHHHHHHHHHHHH
Confidence 753200122222 2222222221111 125778889999999999876654
No 204
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.02 E-value=1.7e-09 Score=109.87 Aligned_cols=129 Identities=16% Similarity=0.138 Sum_probs=69.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcc-ccCCCCCcccee-E----------EEE--------------------------
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAF-KASAGSSAITKT-C----------EMK-------------------------- 61 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~-~~~~~~~~~t~~-~----------~~~-------------------------- 61 (371)
+.|+|+|++|||||||+++|+|...+ .++......+.. . ...
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 35999999999999999999998655 233221111000 0 000
Q ss_pred --------------eEEeeCCcEEEEEeCCCCCCC--CcchHHHHHHHHHHHhhhcCC-ceEEEEEEeCCCCCCHHHHHH
Q 040649 62 --------------TTVLKDGQVVNVIDTPGLFDS--SAESEYVSKEIAKCIGMAKDG-IHAVLLVFSVRSRFSQEEEAA 124 (371)
Q Consensus 62 --------------~~~~~~~~~i~liDTPG~~~~--~~~~~~~~~ei~~~~~~~~~~-~d~vl~v~d~~~~~~~~~~~~ 124 (371)
.........+.++|.||+... ++.+......+...+..+... ...++++++.+..+. ....
T Consensus 126 ~~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a--~~~~ 203 (608)
T 3szr_A 126 AGEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA--TTEA 203 (608)
T ss_dssp HCSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT--TCHH
T ss_pred cCCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc--cHHH
Confidence 000012245899999998763 222223344555555554333 355666666553333 2234
Q ss_pred HHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 125 VHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 125 l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
+..+...-+.. .++|+|+||+|.+..
T Consensus 204 l~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 204 LSMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHHhhcC--CceEEEecchhhcCc
Confidence 55555553332 489999999998855
No 205
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.00 E-value=5e-09 Score=101.01 Aligned_cols=171 Identities=16% Similarity=0.125 Sum_probs=95.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccce-eEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITK-TCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG 98 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~-~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~ 98 (371)
..|+|+|+||||||||+|+|+|...+..+....+.+. ......+.......++++|+||++..... ..++...+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~~ 145 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKMK 145 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHTT
T ss_pred eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHHcC
Confidence 4899999999999999999999776555433221111 00111111112236899999998743211 223333332
Q ss_pred hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCC--CC-----chhhHHHHhcccCCchHHH
Q 040649 99 MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDL--ED-----NEKTLEDYLGLECPKPLKE 171 (371)
Q Consensus 99 ~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~--~~-----~~~~l~~~l~~~~~~~l~~ 171 (371)
. ...+.+++ ++.+ +.......+...+... + .|+++|+|+.|.+ ++ +.......+.. +..
T Consensus 146 L--~~~~~~~~-lS~G-~~~kqrv~la~aL~~~-~----~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~-----l~~ 211 (413)
T 1tq4_A 146 F--YEYDFFII-ISAT-RFKKNDIDIAKAISMM-K----KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQD-----IRL 211 (413)
T ss_dssp G--GGCSEEEE-EESS-CCCHHHHHHHHHHHHT-T----CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHH-----HHH
T ss_pred C--CccCCeEE-eCCC-CccHHHHHHHHHHHhc-C----CCeEEEEecCcccccCcccccCCHHHHHHHHHH-----HHH
Confidence 2 22345554 7776 3556666666666542 2 3999999999864 10 01122222221 333
Q ss_pred HH----Hhc---CCceEeecCcchhhHhhHHhHHHHHHHHHHHHhhcC
Q 040649 172 IL----QLC---DNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVKNG 212 (371)
Q Consensus 172 ~~----~~~---~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~~~ 212 (371)
+. ... ...+++++.... .+.++++|.+.|...++...
T Consensus 212 l~~~~l~~~g~~~~~iiliSsh~l----~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 212 NCVNTFRENGIAEPPIFLLSNKNV----CHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHHHHHHHTTCSSCCEEECCTTCT----TSTTHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHhcCCCCCcEEEEecCcC----CccCHHHHHHHHHHhCccch
Confidence 32 121 235566655432 33679999999998887653
No 206
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.97 E-value=1.2e-09 Score=109.61 Aligned_cols=109 Identities=20% Similarity=0.205 Sum_probs=63.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc-cccCCCCCccceeEEEEeEE--eeCCcEEEEEeCCCCCCCCc-chHHHHH
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA-FKASAGSSAITKTCEMKTTV--LKDGQVVNVIDTPGLFDSSA-ESEYVSK 91 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~i~liDTPG~~~~~~-~~~~~~~ 91 (371)
..+..+|+|+|++|+|||||+|.|+|... +..+..+.++|.....+... ...+..+.||||||+++... +.....
T Consensus 35 ~~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~- 113 (592)
T 1f5n_A 35 TQPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS- 113 (592)
T ss_dssp CSBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH-
T ss_pred cCCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH-
Confidence 34557899999999999999999999874 22222222333333222111 12567899999999997543 111111
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~ 130 (371)
.+....... .+ ++|+++...++..+...+..+..
T Consensus 114 ~~fala~ll---ss--~lv~n~~~~i~~~dl~~l~~v~e 147 (592)
T 1f5n_A 114 WIFALAVLL---SS--TFVYNSIGTINQQAMDQLYYVTE 147 (592)
T ss_dssp HHHHHHHHH---CS--EEEEEEESCSSHHHHHTTHHHHT
T ss_pred HHHHHHHHh---cC--eEEEECCCCccHHHHHHHHHHHH
Confidence 121111111 12 45556555788888776665543
No 207
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.97 E-value=1.6e-11 Score=117.43 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC-----CccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR-----RAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEI 93 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei 93 (371)
..+|+++|.+|+|||||+|+|+|. ..... ...+++|..... +.+ +..+.++||||+.+..........+.
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~-~~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITT-SYFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEE-EECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTT
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceee-cCCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHH
Confidence 357999999999999999999987 22211 122344544333 222 23478999999987642222222222
Q ss_pred HHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 94 AKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 94 ~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
...+. ....+|+++|+++....+.......+..+. +.. .|+++++||.|.+..
T Consensus 237 l~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~---~~~--~~~~~v~~k~d~~~~ 289 (369)
T 3ec1_A 237 LKIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIK---GGR--RSFVCYMANELTVHR 289 (369)
T ss_dssp HHHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEE---SSS--EEEEEEECTTSCEEE
T ss_pred HHHHh-cccccCceEEEEcCCceEEECCEEEEEEcc---CCC--ceEEEEecCCccccc
Confidence 22221 125689999999884211111111122221 222 399999999998744
No 208
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.94 E-value=8.9e-10 Score=105.37 Aligned_cols=91 Identities=14% Similarity=0.126 Sum_probs=47.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGLFD 81 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~~~ 81 (371)
...+|+|+|.+|+|||||+|+|+|..... ...+++|..+....+.+++ ...+.++||||+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~--~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~ 98 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASA--ENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVK 98 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccc--cCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccc
Confidence 44789999999999999999999986521 2223334333332222211 23589999999886
Q ss_pred CCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 82 SSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 82 ~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.......+...+. ..+..+|++++|+|+.
T Consensus 99 ~as~~~glg~~~l----~~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 99 GAHNGQGLGNAFL----SHISACDGIFHLTRAF 127 (396)
T ss_dssp --------CCHHH----HHHHTSSSEEEEEEC-
T ss_pred ccchhhHHHHHHH----HHHHhcCeEEEEEecC
Confidence 4321111212222 3345679999999986
No 209
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.86 E-value=3.6e-09 Score=101.30 Aligned_cols=94 Identities=16% Similarity=0.112 Sum_probs=58.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeC----------------CcEEEEEeCCCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKD----------------GQVVNVIDTPGL 79 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~i~liDTPG~ 79 (371)
...+.+|+|+|+||+|||||+|+|+|...... ...+++|..+....+.+.+ +..+.++||||+
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~-~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITKSVLGNP-ANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHHSTTTST-TCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCCCcccc-cCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 34567999999999999999999999764122 1123334333333333311 135799999998
Q ss_pred CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC
Q 040649 80 FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR 114 (371)
Q Consensus 80 ~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~ 114 (371)
.......+.+...+... +..+|++++|+|+.
T Consensus 96 ~~~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSH----VRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred ccCCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 86433222222223333 34679999999986
No 210
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.79 E-value=9.7e-09 Score=94.35 Aligned_cols=65 Identities=23% Similarity=0.330 Sum_probs=41.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCcchH
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSAESE 87 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~ 87 (371)
...+|+++|.||+|||||+|+|+|......+. .+++|...+. +. .+..+.++||||+........
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~~~~ 183 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQW--VK--VGKELELLDTPGILWPKFEDE 183 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CC--EE--ETTTEEEEECCCCCCSCCCCH
T ss_pred CCceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeEE--EE--eCCCEEEEECcCcCCCCCCCH
Confidence 45789999999999999999999987644332 2344544432 22 245789999999987654433
No 211
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.74 E-value=4.8e-08 Score=94.65 Aligned_cols=123 Identities=15% Similarity=0.156 Sum_probs=69.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCccccC--CCCC-------------ccceeEEEEeE-----------Ee
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL------GRRAFKAS--AGSS-------------AITKTCEMKTT-----------VL 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~--~~~~-------------~~t~~~~~~~~-----------~~ 65 (371)
++..|+++|++|+||||++..|+ |..+.... ...+ ++......... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999987 44331110 0000 01000000000 00
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||.... ......++..... ...+|.+++|+|+..+ .........+.+.+ .+..+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~~---d~~lm~el~~i~~--~~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKE---DKALIEEMKQISN--VIHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCcccc---hHHHHHHHHHHHH--hhcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 13467899999997753 2334444444332 2257999999999742 22233333333322 3778999
Q ss_pred eCCCCCCC
Q 040649 145 TGGDDLED 152 (371)
Q Consensus 145 tk~D~~~~ 152 (371)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99997644
No 212
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.74 E-value=4.5e-08 Score=92.94 Aligned_cols=73 Identities=14% Similarity=0.121 Sum_probs=45.8
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC--------CHHHHHHHHHHHHHhCCC--C
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF--------SQEEEAAVHRLQTLFGKK--I 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~ 136 (371)
++..+.++||||... ....+..++.+++++|||+|+++.- ...-...+.++....... .
T Consensus 199 ~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 199 KNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 567899999999532 3344556788999999999998410 122233444555444321 1
Q ss_pred CCeEEEEEeCCCCC
Q 040649 137 FDYMIVVFTGGDDL 150 (371)
Q Consensus 137 ~~~~ilv~tk~D~~ 150 (371)
..|+|+|+||.|+.
T Consensus 268 ~~piILv~NK~DL~ 281 (362)
T 1zcb_A 268 NVSIILFLNKTDLL 281 (362)
T ss_dssp TSEEEEEEECHHHH
T ss_pred CCCEEEEEEChhhh
Confidence 24999999999975
No 213
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.68 E-value=1.8e-08 Score=88.97 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|+|.+|+|||||++.+++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999865
No 214
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.67 E-value=1.1e-07 Score=89.96 Aligned_cols=129 Identities=14% Similarity=0.092 Sum_probs=73.0
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC--------CHHHHHHHHHHHHHhCCC--C
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF--------SQEEEAAVHRLQTLFGKK--I 136 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~--------~~~~~~~l~~l~~~~~~~--~ 136 (371)
++..+.+|||+|... +...+..++.++|++|||+|+++.- ...-.....++....... .
T Consensus 191 ~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~ 259 (353)
T 1cip_A 191 KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFT 259 (353)
T ss_dssp TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcccc
Confidence 567899999999543 2334556788999999999998421 122334445555554421 1
Q ss_pred CCeEEEEEeCCCCCCCc--hhhHHHHhccc----CCchHHHHHH----hc-----CCceEeecCcchhhHhhHHhHHHHH
Q 040649 137 FDYMIVVFTGGDDLEDN--EKTLEDYLGLE----CPKPLKEILQ----LC-----DNRWVLFDNKTKYEAKRTEQVQQLL 201 (371)
Q Consensus 137 ~~~~ilv~tk~D~~~~~--~~~l~~~l~~~----~~~~l~~~~~----~~-----~~r~~~f~~~~~~sa~~~~~i~~Ll 201 (371)
..|+++|+||.|+.... ...+..++... .......++. .. ...++++ .+||+++.+|.+++
T Consensus 260 ~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~----etSA~~~~nV~~vF 335 (353)
T 1cip_A 260 DTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTH----FTCATDTKNVQFVF 335 (353)
T ss_dssp TSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEE----ECCTTCHHHHHHHH
T ss_pred CCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEE----EEECcCchhHHHHH
Confidence 24999999999975210 00011111000 0001122222 11 1222222 35788899999999
Q ss_pred HHHHHHHhh
Q 040649 202 SLVNAVNVK 210 (371)
Q Consensus 202 ~~i~~~~~~ 210 (371)
..+.+.+..
T Consensus 336 ~~v~~~i~~ 344 (353)
T 1cip_A 336 DAVTDVIIK 344 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876544
No 215
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.63 E-value=4.7e-08 Score=94.66 Aligned_cols=125 Identities=17% Similarity=0.179 Sum_probs=70.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh------CCCccccC--CCC-------------CccceeEEEE----------eE-Ee
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL------GRRAFKAS--AGS-------------SAITKTCEMK----------TT-VL 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~------g~~~~~~~--~~~-------------~~~t~~~~~~----------~~-~~ 65 (371)
++..|+++|++|+||||++..|+ |..+.-.. ... .++....... .. ..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45789999999999999999987 33321100 000 0110000000 00 00
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||...... ......++....... .+|.+++|+|+... .........+.+.++ +..+|+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~-d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~~-----~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGE-ETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQASP-----IGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCC-TTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHCS-----SEEEEE
T ss_pred HhcCCCEEEEECCCCccccC-CHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhcccC-----CcEEEE
Confidence 1256788999999754101 223344454443333 46899999999732 223344455554432 788999
Q ss_pred eCCCCCCC
Q 040649 145 TGGDDLED 152 (371)
Q Consensus 145 tk~D~~~~ 152 (371)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99997643
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.63 E-value=1.2e-07 Score=92.82 Aligned_cols=124 Identities=15% Similarity=0.175 Sum_probs=69.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC---Cccce--------------eEEEEeEE---------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS---SAITK--------------TCEMKTTV--------------- 64 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~---~~~t~--------------~~~~~~~~--------------- 64 (371)
.++..|+|+|++|||||||++.|+|...+..+... ..+.. ...+....
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 34578999999999999999999875432211100 00000 00000000
Q ss_pred -eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHH---hhh-cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCe
Q 040649 65 -LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCI---GMA-KDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDY 139 (371)
Q Consensus 65 -~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~---~~~-~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~ 139 (371)
...+..+.||||+|.... ......++.+.. ... ...++-+++|+|+..+ ......++.+...++ .
T Consensus 371 a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~~~~~-----i 440 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFHEAVG-----L 440 (503)
T ss_dssp HHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHHHHTC-----C
T ss_pred HHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHHhhcC-----C
Confidence 013456889999998753 223333333332 212 2347889999998733 233334444544433 5
Q ss_pred EEEEEeCCCCC
Q 040649 140 MIVVFTGGDDL 150 (371)
Q Consensus 140 ~ilv~tk~D~~ 150 (371)
..+|+||.|..
T Consensus 441 tgvIlTKLD~t 451 (503)
T 2yhs_A 441 TGITLTKLDGT 451 (503)
T ss_dssp SEEEEECGGGC
T ss_pred CEEEEEcCCCc
Confidence 67899999964
No 217
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.60 E-value=2.7e-07 Score=86.12 Aligned_cols=135 Identities=12% Similarity=0.076 Sum_probs=75.7
Q ss_pred EeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC-------CC-CCHHHHHHHHHHHHHh
Q 040649 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR-------SR-FSQEEEAAVHRLQTLF 132 (371)
Q Consensus 61 ~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~-------~~-~~~~~~~~l~~l~~~~ 132 (371)
..+.. .+..+.+|||.|-. .....+..++.+++++|||+|++ +. -...-...+.++....
T Consensus 160 ~~~~~-~~v~l~iwDtgGQe-----------~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~ 227 (327)
T 3ohm_A 160 YPFDL-QSVIFRMVDVGGQR-----------SERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTII 227 (327)
T ss_dssp EEEEE-TTEEEEEEEECCSH-----------HHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHH
T ss_pred EEEEe-eceeeEEEEcCCch-----------hHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHh
Confidence 33444 66789999999932 24445567889999999999764 11 1122234455555555
Q ss_pred CCCC--CCeEEEEEeCCCCCCCc--hhhHHHHhcccCC---------chHHHHHHh---cC-CceEeecCcchhhHhhHH
Q 040649 133 GKKI--FDYMIVVFTGGDDLEDN--EKTLEDYLGLECP---------KPLKEILQL---CD-NRWVLFDNKTKYEAKRTE 195 (371)
Q Consensus 133 ~~~~--~~~~ilv~tk~D~~~~~--~~~l~~~l~~~~~---------~~l~~~~~~---~~-~r~~~f~~~~~~sa~~~~ 195 (371)
.... ..|+++|+||+|+.... ...+..|...... .++...+.. .. ..++.+ .+||+...
T Consensus 228 ~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~----~TsA~d~~ 303 (327)
T 3ohm_A 228 TYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSH----FTCATDTE 303 (327)
T ss_dssp TSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEE----ECCTTCHH
T ss_pred hhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEE----EEEeecCH
Confidence 4321 24999999999975321 0112222221110 011111111 11 222222 25777889
Q ss_pred hHHHHHHHHHHHHhhc
Q 040649 196 QVQQLLSLVNAVNVKN 211 (371)
Q Consensus 196 ~i~~Ll~~i~~~~~~~ 211 (371)
+|..++..+.+.+-.+
T Consensus 304 nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 304 NIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998766543
No 218
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.57 E-value=2.2e-07 Score=86.17 Aligned_cols=126 Identities=17% Similarity=0.143 Sum_probs=68.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC------C-CC-c-c--------ceeEEEEeEE----------------
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA------G-SS-A-I--------TKTCEMKTTV---------------- 64 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~------~-~~-~-~--------t~~~~~~~~~---------------- 64 (371)
++..|+|+|++||||||+++.|+|...+..+. . .. + . .....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998654332210 0 00 0 0 0000000000
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh-hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG-MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~-~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
...+..+.++||+|........-.........+. .....|+.+++++|+..+ ......+..+....+ ..+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~--~~~~~~~~~~~~~~~-----~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTG--QNGLEQAKKFHEAVG-----LTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBC--THHHHHHHHHHHHHC-----CSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHH--HHHHHHHHHHHHHcC-----CcEEE
Confidence 0013356799999986532111111111222222 223568889999998743 223334444444333 67899
Q ss_pred EeCCCCC
Q 040649 144 FTGGDDL 150 (371)
Q Consensus 144 ~tk~D~~ 150 (371)
+||.|..
T Consensus 254 vTh~d~~ 260 (304)
T 1rj9_A 254 VTKLDGT 260 (304)
T ss_dssp EECTTSS
T ss_pred EECCccc
Confidence 9999965
No 219
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.56 E-value=5e-08 Score=88.59 Aligned_cols=60 Identities=30% Similarity=0.422 Sum_probs=39.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccCCCCCccceeEEEEeEEeeCCcEEEEEeCCCCCCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKASAGSSAITKTCEMKTTVLKDGQVVNVIDTPGLFDSSA 84 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~i~liDTPG~~~~~~ 84 (371)
.+++++|.+|+|||||+|+|+|......+. ..++|..... +. .+..+.|+||||+.+...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQW--FS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCE--EE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceEE--EE--eCCCEEEEECCCcccCcC
Confidence 589999999999999999999987644322 2334433321 11 345788999999998754
No 220
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.52 E-value=1e-07 Score=92.64 Aligned_cols=121 Identities=17% Similarity=0.162 Sum_probs=66.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC------ccc--cCCC--------------------CCc-cceeEE-E--EeEEee
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR------AFK--ASAG--------------------SSA-ITKTCE-M--KTTVLK 66 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~------~~~--~~~~--------------------~~~-~t~~~~-~--~~~~~~ 66 (371)
...|+++|++|+||||+++.|++.. +.- .... ..+ .+.... . ......
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~ 178 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF 178 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999987632 100 0000 000 010000 0 000001
Q ss_pred CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCC-CeEEEEEe
Q 040649 67 DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIF-DYMIVVFT 145 (371)
Q Consensus 67 ~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~-~~~ilv~t 145 (371)
.+..+.||||||.... ......++... .....+|.+++|+|+..+. + .+..+.. |... . ....+|+|
T Consensus 179 ~~~D~vIIDT~G~~~~---~~~l~~~l~~i--~~~~~~d~vllVvda~~g~---~--~~~~~~~-~~~~-~~~i~gvVln 246 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKE---EKGLLEEMKQI--KEITNPDEIILVIDGTIGQ---Q--AGIQAKA-FKEA-VGEIGSIIVT 246 (432)
T ss_dssp SSCSEEEEECCCSCSS---HHHHHHHHHHT--TSSSCCSEEEEEEEGGGGG---G--HHHHHHH-HHTT-SCSCEEEEEE
T ss_pred hCCCEEEEcCCCCccc---cHHHHHHHHHH--HHHhcCcceeEEeeccccH---H--HHHHHHH-Hhhc-ccCCeEEEEe
Confidence 4567899999998752 23333333221 2233689999999987432 1 2223322 2221 2 25899999
Q ss_pred CCCCCC
Q 040649 146 GGDDLE 151 (371)
Q Consensus 146 k~D~~~ 151 (371)
|+|...
T Consensus 247 K~D~~~ 252 (432)
T 2v3c_C 247 KLDGSA 252 (432)
T ss_dssp CSSSCS
T ss_pred CCCCcc
Confidence 999753
No 221
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.49 E-value=5e-07 Score=84.58 Aligned_cols=122 Identities=14% Similarity=0.099 Sum_probs=67.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC-------C--------------ccceeEEEEeEE-----------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS-------S--------------AITKTCEMKTTV----------- 64 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~-------~--------------~~t~~~~~~~~~----------- 64 (371)
.++..|+|+|++||||||+++.|+|...+..+... . ++....+.....
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~ 206 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH 206 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence 45679999999999999999999875432221000 0 000000000000
Q ss_pred -eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEE
Q 040649 65 -LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVV 143 (371)
Q Consensus 65 -~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv 143 (371)
...+..+.++||+|....... ...++....... .+|..++++|+... ..-...+..+...++ ..++|
T Consensus 207 ~~~~~~d~vliDtaG~~~~~~~---l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~~-----it~ii 274 (328)
T 3e70_C 207 AKARGIDVVLIDTAGRSETNRN---LMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAVK-----IDGII 274 (328)
T ss_dssp HHHHTCSEEEEEECCSCCTTTC---HHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHSC-----CCEEE
T ss_pred HHhccchhhHHhhccchhHHHH---HHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhcC-----CCEEE
Confidence 002345678999998654222 233333322222 36889999998743 222333344443332 67899
Q ss_pred EeCCCCC
Q 040649 144 FTGGDDL 150 (371)
Q Consensus 144 ~tk~D~~ 150 (371)
+||.|..
T Consensus 275 lTKlD~~ 281 (328)
T 3e70_C 275 LTKLDAD 281 (328)
T ss_dssp EECGGGC
T ss_pred EeCcCCc
Confidence 9999964
No 222
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.48 E-value=3.8e-07 Score=88.56 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=58.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC-----------------CccccCCCCCccceeEEEEeE----EeeC--CcEEE
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR-----------------RAFKASAGSSAITKTCEMKTT----VLKD--GQVVN 72 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~-----------------~~~~~~~~~~~~t~~~~~~~~----~~~~--~~~i~ 72 (371)
..+...|.|+|++++|||||+|.|+|. ..|..+......|...-.... ..+. ...+.
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~GIw~~~~p~~~~~~~~~~~~vv 143 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCEEEEESSCEEEECSSSCEEEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeEEEEecCccccccCCCCcceEE
Confidence 345578999999999999999999964 122222111222222111110 1112 24689
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~ 130 (371)
++||||+++...+ ......+....... .+++||-+. ..+...+...|..+.+
T Consensus 144 llDTeG~~~~~~~-~~~d~~ifal~~lL---Ss~~IyN~~--~~i~~~~l~~L~~~~e 195 (447)
T 3q5d_A 144 LMDTQGTFDSQST-LRDSATVFALSTMI---SSIQVYNLS--QNVQEDDLQHLQLFTE 195 (447)
T ss_dssp EEEEECCCSSHHH-HHHHHHHHHHHHHH---CSEEEEEES--SSCCHHHHHHHHHHHH
T ss_pred EEcCCcccccccc-hhhhHHHHHHHHHH---hhHHHHhhc--ccccHHHHHHHHHHHH
Confidence 9999999876321 11112222221111 255555543 3577777776666554
No 223
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.39 E-value=5.7e-06 Score=80.29 Aligned_cols=123 Identities=18% Similarity=0.149 Sum_probs=66.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHh-------CCCccccCCCCC-ccce----------eEEEEe--------------E-
Q 040649 17 NGERTVVLLGRTGNGKSATGNSIL-------GRRAFKASAGSS-AITK----------TCEMKT--------------T- 63 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~-------g~~~~~~~~~~~-~~t~----------~~~~~~--------------~- 63 (371)
.+...|+++|++|+||||++..|+ |..+......+. +... ...... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 345788999999999999998887 654321110000 0000 000000 0
Q ss_pred Eee-CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEE
Q 040649 64 VLK-DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIV 142 (371)
Q Consensus 64 ~~~-~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~il 142 (371)
... .+..+.||||||.... ......++.... ....+|.+++|+|+..... ....+..+... . ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~--~~~~p~~vllVvda~~g~~--~~~~~~~f~~~----l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVH--ASINPVETLFVVDAMTGQD--AANTAKAFNEA----L-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHH--HHSCCSEEEEEEETTBCTT--HHHHHHHHHHH----S-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHH--HhhcCcceeEEeecchhHH--HHHHHHHHhcc----C-CCeEE
Confidence 001 3567999999997653 222333333322 1336789999999874322 22222323221 1 13557
Q ss_pred EEeCCCCCC
Q 040649 143 VFTGGDDLE 151 (371)
Q Consensus 143 v~tk~D~~~ 151 (371)
|+||+|...
T Consensus 246 VlnK~D~~~ 254 (433)
T 2xxa_A 246 VLTKVDGDA 254 (433)
T ss_dssp EEECTTSSS
T ss_pred EEecCCCCc
Confidence 999999753
No 224
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.37 E-value=4e-06 Score=79.20 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=45.4
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCC--------CCCCHHHHHHHHHHHHHhCCC--CCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVR--------SRFSQEEEAAVHRLQTLFGKK--IFD 138 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~--------~~~~~~~~~~l~~l~~~~~~~--~~~ 138 (371)
..+.++||+|-.. +......++.+++++|+|+|++ ..-...-.....++....... ...
T Consensus 183 v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~ 251 (354)
T 2xtz_A 183 EVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKT 251 (354)
T ss_dssp -EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSC
T ss_pred eeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCC
Confidence 5789999999643 2333456788999999999986 111122233444444443321 124
Q ss_pred eEEEEEeCCCCC
Q 040649 139 YMIVVFTGGDDL 150 (371)
Q Consensus 139 ~~ilv~tk~D~~ 150 (371)
|+++|+||+|+.
T Consensus 252 piiLvgNK~DL~ 263 (354)
T 2xtz_A 252 SFMLFLNKFDIF 263 (354)
T ss_dssp EEEEEEECHHHH
T ss_pred eEEEEEECcchh
Confidence 999999999964
No 225
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.36 E-value=3.5e-06 Score=77.95 Aligned_cols=124 Identities=17% Similarity=0.280 Sum_probs=66.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCCC---Cccce--------------eEEEEe--EE--e----------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAGS---SAITK--------------TCEMKT--TV--L---------- 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~---~~~t~--------------~~~~~~--~~--~---------- 65 (371)
.++..++++|++||||||+++.|+|...+..+... ..+.. ...+.. .. .
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~ 177 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 177 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHH
Confidence 34578999999999999999999875432221000 00000 000100 00 0
Q ss_pred ---eCCcEEEEEeCCCCCCCCcchHHHHHHHH---HHHh-hhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCC
Q 040649 66 ---KDGQVVNVIDTPGLFDSSAESEYVSKEIA---KCIG-MAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFD 138 (371)
Q Consensus 66 ---~~~~~i~liDTPG~~~~~~~~~~~~~ei~---~~~~-~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (371)
..+....++||.|+.... .....++. ..+. .....|+-+++|+|++..+... ..+..+....|
T Consensus 178 ~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~--~~~~~~~~~~g----- 247 (302)
T 3b9q_A 178 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVG----- 247 (302)
T ss_dssp HHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTC-----
T ss_pred HHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHH--HHHHHHHHhcC-----
Confidence 012346789999987532 22222222 1222 2234688888888865444322 22333433322
Q ss_pred eEEEEEeCCCCC
Q 040649 139 YMIVVFTGGDDL 150 (371)
Q Consensus 139 ~~ilv~tk~D~~ 150 (371)
..++++||.|..
T Consensus 248 ~t~iiiThlD~~ 259 (302)
T 3b9q_A 248 ITGLILTKLDGS 259 (302)
T ss_dssp CCEEEEECCSSC
T ss_pred CCEEEEeCCCCC
Confidence 678899999865
No 226
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.35 E-value=2.8e-06 Score=78.43 Aligned_cols=123 Identities=15% Similarity=0.131 Sum_probs=64.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC------CCccccCCCCC-ccce----------eEEEEeE--------------E-ee
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG------RRAFKASAGSS-AITK----------TCEMKTT--------------V-LK 66 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g------~~~~~~~~~~~-~~t~----------~~~~~~~--------------~-~~ 66 (371)
+..|+++|++|+||||+++.|++ ..+.-...... +.+. ....... . ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 57889999999999999999873 32211100000 0000 0000000 0 00
Q ss_pred -CCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 67 -DGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 67 -~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
.+..+.||||||..... ..+....++..... ...+|.+++|+|+... ......+..+.. .. ....+|+|
T Consensus 178 ~~~~D~ViIDTpg~~~~~-~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~~~~~~~~~~----~~-~i~gvVln 247 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYG-EEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKAYDLASKFNQ----AS-KIGTIIIT 247 (297)
T ss_dssp HTTCSEEEEECCCSCCTT-CHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGHHHHHHHHHH----TC-TTEEEEEE
T ss_pred hCCCCEEEEeCCCCcccc-cHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHHHHHHHHHHh----hC-CCCEEEEe
Confidence 45578999999987511 12223333332211 1257999999998732 222222232222 11 24788999
Q ss_pred CCCCCC
Q 040649 146 GGDDLE 151 (371)
Q Consensus 146 k~D~~~ 151 (371)
|+|...
T Consensus 248 k~D~~~ 253 (297)
T 1j8m_F 248 KMDGTA 253 (297)
T ss_dssp CGGGCT
T ss_pred CCCCCc
Confidence 999653
No 227
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.35 E-value=3.7e-06 Score=79.50 Aligned_cols=126 Identities=16% Similarity=0.267 Sum_probs=67.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCCC---CCccce--------------eEEEEeE--E--e----------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASAG---SSAITK--------------TCEMKTT--V--L---------- 65 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~---~~~~t~--------------~~~~~~~--~--~---------- 65 (371)
.++..|+|+|++||||||+++.|+|...+..+.. ...+.. ...+... . .
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~ 234 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVK 234 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHH
Confidence 3457899999999999999999987543222100 000000 0001000 0 0
Q ss_pred ---eCCcEEEEEeCCCCCCCCcchHHHHHHHH---HHH-hhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCC
Q 040649 66 ---KDGQVVNVIDTPGLFDSSAESEYVSKEIA---KCI-GMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFD 138 (371)
Q Consensus 66 ---~~~~~i~liDTPG~~~~~~~~~~~~~ei~---~~~-~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~ 138 (371)
..+....++||.|+.... .....++. ..+ ......|+-+++|+|++..+... ..+..+....|
T Consensus 235 ~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~--~~~~~~~~~~g----- 304 (359)
T 2og2_A 235 RGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNML--PQAREFNEVVG----- 304 (359)
T ss_dssp HHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGH--HHHHHHHHHTC-----
T ss_pred HHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHH--HHHHHHHHhcC-----
Confidence 012346789999987542 21222222 122 22335688888999955333322 22333433333
Q ss_pred eEEEEEeCCCCCCC
Q 040649 139 YMIVVFTGGDDLED 152 (371)
Q Consensus 139 ~~ilv~tk~D~~~~ 152 (371)
..++++||.|....
T Consensus 305 ~t~iiiThlD~~~~ 318 (359)
T 2og2_A 305 ITGLILTKLDGSAR 318 (359)
T ss_dssp CCEEEEESCTTCSC
T ss_pred CeEEEEecCccccc
Confidence 67889999986533
No 228
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.28 E-value=3e-06 Score=79.37 Aligned_cols=77 Identities=10% Similarity=0.071 Sum_probs=49.6
Q ss_pred eEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCC--------CCCHHHHHHHHHHHHHhC
Q 040649 62 TTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRS--------RFSQEEEAAVHRLQTLFG 133 (371)
Q Consensus 62 ~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~--------~~~~~~~~~l~~l~~~~~ 133 (371)
.+.+ ++..+.+|||+|-. .+...+..++.+++++|||+|++. .-...-...+.++...+.
T Consensus 155 ~~~~-~~v~l~iwDtaGQe-----------~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~ 222 (340)
T 4fid_A 155 DFVV-KDIPFHLIDVGGQR-----------SERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMT 222 (340)
T ss_dssp EEES-SSCEEEEEECCSCH-----------HHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHH
T ss_pred EEEe-eeeeeccccCCCcc-----------cccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhh
Confidence 3444 56789999999932 244555677899999999999861 011222334444444433
Q ss_pred CC--CCCeEEEEEeCCCCC
Q 040649 134 KK--IFDYMIVVFTGGDDL 150 (371)
Q Consensus 134 ~~--~~~~~ilv~tk~D~~ 150 (371)
.. ...|+++|+||+|+.
T Consensus 223 ~~~~~~~piiLv~NK~DL~ 241 (340)
T 4fid_A 223 NEFLKGAVKLIFLNKMDLF 241 (340)
T ss_dssp CGGGTTSEEEEEEECHHHH
T ss_pred hhccCCCeEEEEEECchhh
Confidence 22 124999999999965
No 229
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.27 E-value=5e-06 Score=77.00 Aligned_cols=125 Identities=17% Similarity=0.202 Sum_probs=65.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC-------CCCccc----------eeEEEEeE----------------E
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA-------GSSAIT----------KTCEMKTT----------------V 64 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-------~~~~~t----------~~~~~~~~----------------~ 64 (371)
++..|+++|++|+||||++..|++......+. ...... ........ .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 45689999999999999999987643211100 000000 00000000 0
Q ss_pred eeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHh---hhc-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Q 040649 65 LKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIG---MAK-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYM 140 (371)
Q Consensus 65 ~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~---~~~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 140 (371)
...+..+.|+||||.... ......++..... ... ..+|.+++|+|+..+ .........+.... ...
T Consensus 183 ~~~~~dvvIiDtpg~~~~---~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~~~-----~i~ 252 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLHT---KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAV-----NVT 252 (306)
T ss_dssp HHTTCSEEEEEECCCCSC---HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHS-----CCC
T ss_pred HhcCCCEEEEECCCchhh---HHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHhcC-----CCC
Confidence 113456899999996432 3333343433322 112 358899999998621 12222222332221 256
Q ss_pred EEEEeCCCCCCC
Q 040649 141 IVVFTGGDDLED 152 (371)
Q Consensus 141 ilv~tk~D~~~~ 152 (371)
-+|+||.|....
T Consensus 253 gvVlTk~D~~~~ 264 (306)
T 1vma_A 253 GIILTKLDGTAK 264 (306)
T ss_dssp EEEEECGGGCSC
T ss_pred EEEEeCCCCccc
Confidence 788999996533
No 230
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.24 E-value=2.9e-07 Score=85.29 Aligned_cols=59 Identities=29% Similarity=0.340 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC------ccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS------AITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++|+|+||+|||||+|+|+|...+.++.... .+|..... ... . ..+++||||+...
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~--~~~-~--~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVEL--IHT-S--GGLVADTPGFSSL 237 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCE--EEE-T--TEEEESSCSCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHH--hhc-C--CEEEecCCCcccc
Confidence 4689999999999999999999987655443221 22221111 111 1 3579999998753
No 231
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.16 E-value=4.2e-06 Score=80.84 Aligned_cols=122 Identities=20% Similarity=0.194 Sum_probs=65.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc------C--CCCC-------------ccceeEEEE-----e-----EE-e
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA------S--AGSS-------------AITKTCEMK-----T-----TV-L 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~------~--~~~~-------------~~t~~~~~~-----~-----~~-~ 65 (371)
++..|+++|++|+||||++..|++...... . ...+ ++....... . .. .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456889999999999999998875322110 0 0000 000000000 0 00 0
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||.... ......++....... .+|.+++|+|+... ......+..+...+ ....+|+
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q~av~~a~~f~~~l-----~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--QEALSVARAFDEKV-----GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHT-----CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--HHHHHHHHHHHhcC-----CceEEEE
Confidence 13457899999997653 222333343332222 57889999998732 22222223333222 2567899
Q ss_pred eCCCCCC
Q 040649 145 TGGDDLE 151 (371)
Q Consensus 145 tk~D~~~ 151 (371)
||.|...
T Consensus 245 TKlD~~~ 251 (425)
T 2ffh_A 245 TKLDGDA 251 (425)
T ss_dssp ESGGGCS
T ss_pred eCcCCcc
Confidence 9999653
No 232
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.16 E-value=1.4e-06 Score=80.32 Aligned_cols=122 Identities=18% Similarity=0.240 Sum_probs=65.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccCC-------CCCcccee-----------EEEEe----------E-EeeCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKASA-------GSSAITKT-----------CEMKT----------T-VLKDG 68 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~-------~~~~~t~~-----------~~~~~----------~-~~~~~ 68 (371)
++..|+|+|++|+||||++..|++......+. .....+.. ..... . .. .+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~ 182 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SE 182 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GG
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cC
Confidence 45689999999999999999987543221110 00000000 00000 0 01 34
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGD 148 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D 148 (371)
..+.|+||||.... ......++...+. ...++.+++|+|+++.. . .+..+...|. .....-+|+||.|
T Consensus 183 ~dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~~--~---~~~~~~~~~~--~l~~~giVltk~D 250 (296)
T 2px0_A 183 YDHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAKY--E---DMKHIVKRFS--SVPVNQYIFTKID 250 (296)
T ss_dssp SSEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBCH--H---HHHHHTTTTS--SSCCCEEEEECTT
T ss_pred CCEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCCH--H---HHHHHHHHHh--cCCCCEEEEeCCC
Confidence 57899999998753 2222333333321 12468889999887321 1 2223333333 1235667889999
Q ss_pred CCCC
Q 040649 149 DLED 152 (371)
Q Consensus 149 ~~~~ 152 (371)
....
T Consensus 251 ~~~~ 254 (296)
T 2px0_A 251 ETTS 254 (296)
T ss_dssp TCSC
T ss_pred cccc
Confidence 6633
No 233
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.08 E-value=1.8e-05 Score=73.82 Aligned_cols=125 Identities=21% Similarity=0.262 Sum_probs=66.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCcccc------CCCCCcc--------------ceeEEEE-eE------------
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKA------SAGSSAI--------------TKTCEMK-TT------------ 63 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~------~~~~~~~--------------t~~~~~~-~~------------ 63 (371)
.++..|+|+|++|+||||++..|++...... ....... .....+. ..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 3457899999999999999988865322110 0000000 0000111 00
Q ss_pred ----EeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHH---Hhhhc-CCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC
Q 040649 64 ----VLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKC---IGMAK-DGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK 135 (371)
Q Consensus 64 ----~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~---~~~~~-~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~ 135 (371)
....+..+.||||||.... ......++... +.... ..+|.+++|+++..+ ...+..++. |...
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~-----~~~l~~~~~-~~~~ 253 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG-----QNGVIQAEE-FSKV 253 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT-----HHHHHHHHH-HTTT
T ss_pred HHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc-----HHHHHHHHH-Hhhc
Confidence 0013457899999997642 22233333322 22112 347899999998732 233444444 3322
Q ss_pred CCCeEEEEEeCCCCCC
Q 040649 136 IFDYMIVVFTGGDDLE 151 (371)
Q Consensus 136 ~~~~~ilv~tk~D~~~ 151 (371)
....-+|+||.|...
T Consensus 254 -~~i~GvVltk~d~~~ 268 (320)
T 1zu4_A 254 -ADVSGIILTKMDSTS 268 (320)
T ss_dssp -SCCCEEEEECGGGCS
T ss_pred -CCCcEEEEeCCCCCC
Confidence 235568999999653
No 234
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=98.08 E-value=2.3e-05 Score=75.84 Aligned_cols=108 Identities=19% Similarity=0.190 Sum_probs=61.6
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh-------C----------CCccccCCCCCccceeEEEEeE----EeeCC--cEEE
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL-------G----------RRAFKASAGSSAITKTCEMKTT----VLKDG--QVVN 72 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~-------g----------~~~~~~~~~~~~~t~~~~~~~~----~~~~~--~~i~ 72 (371)
..+...|.|+|+.++|||+|+|.|+ | ...|..+.+..++|...-.... ..+++ ..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 4466788999999999999999775 2 1233333333344443333221 11133 3699
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHH-HhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKC-IGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQT 130 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~-~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~ 130 (371)
++||.|+++...+...- ..|... +..+ +.+||=... .+...+...|..+.+
T Consensus 144 llDTEG~~d~~~~~~~d-~~ifaLa~LLS----S~~IyN~~~--~i~~~~L~~L~~~te 195 (457)
T 4ido_A 144 LMDTQGTFDSQSTLRDS-ATVFALSTMIS----SIQVYNLSQ--NVQEDDLQHLQLFTE 195 (457)
T ss_dssp EEEECCBTCTTCCHHHH-HHHHHHHHHHC----SEEEEEEES--SCCHHHHHHHHHHHH
T ss_pred EEeccCCCCcccCcccc-HHHHHHHHHHh----hheeecccc--cCCHHHHHHHHHHHH
Confidence 99999999875543221 222222 2222 566665544 467777666655543
No 235
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.06 E-value=4.2e-06 Score=77.43 Aligned_cols=58 Identities=24% Similarity=0.277 Sum_probs=37.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC----c--cceeEEEEeEEeeCCcEEEEEeCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS----A--ITKTCEMKTTVLKDGQVVNVIDTPGLFD 81 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~i~liDTPG~~~ 81 (371)
+..++|+|+||+|||||+|+|+ ...+.++.... + +|.... .... ....+++||||+..
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~--~~~~--~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR--LIPF--GKGSFVGDTPGFSK 228 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE--EEEE--TTTEEEESSCCCSS
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE--EEEc--CCCcEEEECcCcCc
Confidence 4688999999999999999999 66555443221 1 121111 1111 13457999999864
No 236
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.03 E-value=3.3e-06 Score=78.15 Aligned_cols=60 Identities=27% Similarity=0.228 Sum_probs=37.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccCCCCC------ccceeEEEEeEEeeCCcEEEEEeCCCCCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKASAGSS------AITKTCEMKTTVLKDGQVVNVIDTPGLFDS 82 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~i~liDTPG~~~~ 82 (371)
+..++++|+||+|||||+|+|+|...+.++.... .+|.... ... ......++||||+...
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~--~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ--LLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC--EEE--CTTSCEEESSCSSTTC
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE--EEE--cCCCCEEEECcCCCcc
Confidence 4688999999999999999999988766543221 1121111 111 1234579999998653
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.98 E-value=3.4e-06 Score=79.61 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=25.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc-cccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA-FKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~-~~~~ 48 (371)
+..++|+|+||+|||||+|+|+|... +.++
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G 245 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQNEILTN 245 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSSCCCCC
T ss_pred CCEEEEECCCCccHHHHHHHHhccccccccC
Confidence 45899999999999999999999876 5544
No 238
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.90 E-value=1.8e-05 Score=72.97 Aligned_cols=122 Identities=20% Similarity=0.183 Sum_probs=65.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC------CCC-C--------------ccceeEE---EEe-------EE-e
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS------AGS-S--------------AITKTCE---MKT-------TV-L 65 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~------~~~-~--------------~~t~~~~---~~~-------~~-~ 65 (371)
++..++++|++|+||||++..|++......+ ... . +...... ..+ .. .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999998754321110 000 0 0000000 000 00 0
Q ss_pred -eCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEE
Q 040649 66 -KDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVF 144 (371)
Q Consensus 66 -~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~ 144 (371)
..+..+.||||||.... +.....++....... .+|.+++|+++.. .......++.+...+ ...-+|+
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~--~~~~~~~~~~~~~~~-----~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMT--GQEALSVARAFDEKV-----GVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGG--THHHHHHHHHHHHHT-----CCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCC--cHHHHHHHHHHhhcC-----CCCEEEE
Confidence 03457899999987653 222334444443322 4788899999873 222222222222211 2466899
Q ss_pred eCCCCCC
Q 040649 145 TGGDDLE 151 (371)
Q Consensus 145 tk~D~~~ 151 (371)
||.|...
T Consensus 245 nk~d~~~ 251 (295)
T 1ls1_A 245 TKLDGDA 251 (295)
T ss_dssp ECGGGCS
T ss_pred ECCCCCc
Confidence 9999653
No 239
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.63 E-value=2.2e-05 Score=69.13 Aligned_cols=41 Identities=20% Similarity=0.273 Sum_probs=23.8
Q ss_pred CCCCCCCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 1 MGERVINGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 1 mg~~~~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
||+..+..+.- ..+++..++|+|+||||||||++.|+|...
T Consensus 1 ~~~~~~~~~~~---~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 1 MGSDKIHHHHH---HMAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -----------------CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCccccccccc---cCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56665544322 223446899999999999999999998754
No 240
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.63 E-value=2.9e-05 Score=69.05 Aligned_cols=30 Identities=27% Similarity=0.223 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||++.|+|...+.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 59 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 346899999999999999999999877544
No 241
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.59 E-value=0.00011 Score=74.06 Aligned_cols=31 Identities=32% Similarity=0.460 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++++|++|||||||++.|+|...+.++
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G 398 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRFYDVDSG 398 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCCC
Confidence 4568999999999999999999998765543
No 242
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.58 E-value=3.5e-05 Score=68.01 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=25.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|+||||||||++.|+|...+.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 58 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDAPTE 58 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 45899999999999999999999876544
No 243
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.55 E-value=5.7e-05 Score=67.51 Aligned_cols=30 Identities=20% Similarity=0.166 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 56 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFYQPTA 56 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCSB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 456899999999999999999999876554
No 244
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.54 E-value=4.7e-05 Score=68.86 Aligned_cols=30 Identities=20% Similarity=0.211 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 60 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLEKPSE 60 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876544
No 245
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.53 E-value=5.4e-05 Score=68.60 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 65 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYLSPSH 65 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSSCCSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876554
No 246
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.52 E-value=3.2e-05 Score=67.88 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|||||||++.|+|..
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999855
No 247
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.51 E-value=4.9e-05 Score=68.53 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 61 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFLKADE 61 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876554
No 248
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.51 E-value=5.3e-05 Score=68.27 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~ 69 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 345899999999999999999999876544
No 249
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.51 E-value=4.5e-05 Score=67.89 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 59 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMDKVE 59 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876543
No 250
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.51 E-value=5.4e-05 Score=68.47 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~ 78 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLEDFDE 78 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999876544
No 251
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.51 E-value=5.1e-05 Score=69.11 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999876544
No 252
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.50 E-value=4.7e-05 Score=66.69 Aligned_cols=29 Identities=21% Similarity=0.110 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
+..++|+|++|||||||++.|+|...+.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~ 63 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLKPLK 63 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 45789999999999999999999876544
No 253
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.49 E-value=5.6e-05 Score=67.42 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 60 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876544
No 254
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.49 E-value=5.8e-05 Score=66.81 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 62 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcCCc
Confidence 346899999999999999999999876443
No 255
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.48 E-value=5.8e-05 Score=67.62 Aligned_cols=30 Identities=23% Similarity=0.278 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 63 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876544
No 256
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.47 E-value=6.4e-05 Score=67.02 Aligned_cols=28 Identities=39% Similarity=0.343 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
..++|+|+||||||||+++|+|...+.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVKPDR 52 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 4789999999999999999999876544
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.47 E-value=3.8e-05 Score=66.34 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..++|+|+||||||||++.|+|..
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999853
No 258
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.45 E-value=6.8e-05 Score=68.13 Aligned_cols=30 Identities=20% Similarity=0.277 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~ 73 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLYQPTG 73 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876544
No 259
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.45 E-value=6.8e-05 Score=67.92 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~ 61 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876554
No 260
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.45 E-value=6.8e-05 Score=68.43 Aligned_cols=30 Identities=20% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~ 75 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYEPATS 75 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876554
No 261
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.44 E-value=0.00011 Score=61.21 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|++|||||||++.|+|.. +.++
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G 61 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG 61 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT-TCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC-CCCC
Confidence 44689999999999999999999977 5443
No 262
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.44 E-value=5.4e-05 Score=65.72 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|+||||||||++.|+|..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999865
No 263
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.43 E-value=7.2e-05 Score=67.24 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 59 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKSTLLDLLLGIHRPIQ 59 (253)
T ss_dssp TTCEEEEECCSSSSHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 345899999999999999999999876544
No 264
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.42 E-value=1.8e-05 Score=68.26 Aligned_cols=26 Identities=38% Similarity=0.756 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34688999999999999999999754
No 265
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.41 E-value=0.00022 Score=68.22 Aligned_cols=78 Identities=14% Similarity=0.161 Sum_probs=51.0
Q ss_pred EeEEeeCCcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCC--------CCHHHHHHHHHHHHHh
Q 040649 61 KTTVLKDGQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSR--------FSQEEEAAVHRLQTLF 132 (371)
Q Consensus 61 ~~~~~~~~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~--------~~~~~~~~l~~l~~~~ 132 (371)
..+.+ ++..+.||||+|-.. +...+..++.+++++|||+|+++- ....-.....++..+.
T Consensus 210 ~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~ 277 (402)
T 1azs_C 210 TKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIW 277 (402)
T ss_dssp EEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHH
T ss_pred EEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHH
Confidence 33444 667899999999543 233456678899999999999840 0122233445555544
Q ss_pred CCC--CCCeEEEEEeCCCCC
Q 040649 133 GKK--IFDYMIVVFTGGDDL 150 (371)
Q Consensus 133 ~~~--~~~~~ilv~tk~D~~ 150 (371)
... ...|++||+||+|+.
T Consensus 278 ~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 278 NNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp TCTTCSSCCEEEEEECHHHH
T ss_pred hcccCCCCeEEEEEEChhhh
Confidence 322 224999999999964
No 266
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.40 E-value=7.6e-05 Score=75.53 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 409 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFYDVDR 409 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCcCCCC
Confidence 457899999999999999999999877554
No 267
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.38 E-value=6.6e-05 Score=63.73 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+++|+|+||||||||++.|+|..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 268
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.38 E-value=0.0001 Score=74.51 Aligned_cols=30 Identities=33% Similarity=0.274 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~ 397 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLIDPER 397 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 456899999999999999999999876554
No 269
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.37 E-value=7.8e-05 Score=66.93 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=26.3
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh---CCCccc
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSIL---GRRAFK 46 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~---g~~~~~ 46 (371)
...++..|+|+|++||||||+++.|. |...++
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 33456799999999999999999999 866544
No 270
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.37 E-value=8e-05 Score=64.12 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..|+|+|++|||||||++.|+|..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4589999999999999999999863
No 271
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.37 E-value=8.2e-05 Score=81.89 Aligned_cols=30 Identities=23% Similarity=0.203 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+|+|||+||||||||++.|+|-..+.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~ 1133 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLERFYDTLG 1133 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTTSSCCSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCccCCC
Confidence 467999999999999999999999776554
No 272
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.37 E-value=9.8e-05 Score=66.20 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
++..++|+|++|||||||++.|+|...+.
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~ 53 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMTSGK 53 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 34589999999999999999999987643
No 273
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.36 E-value=8.1e-05 Score=63.10 Aligned_cols=25 Identities=32% Similarity=0.648 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..++|+|+||||||||++.|++..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999754
No 274
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.34 E-value=0.0002 Score=72.19 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 456899999999999999999999876554
No 275
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.34 E-value=0.00013 Score=62.14 Aligned_cols=25 Identities=28% Similarity=0.535 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|++||||||+++.|+|.
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999986
No 276
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.33 E-value=8.3e-05 Score=68.72 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~ 108 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYDISS 108 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 456899999999999999999999876544
No 277
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.32 E-value=0.00013 Score=69.00 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~ 82 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLLERPTE 82 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcCCCCCc
Confidence 346899999999999999999999887554
No 278
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.31 E-value=0.00012 Score=68.97 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=26.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+|+||||||||+++|+|...+.++
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G 59 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFEQPDSG 59 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 458899999999999999999998876553
No 279
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.31 E-value=0.00011 Score=67.43 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=25.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|++|||||||++.|+|...+.+
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~ 92 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGELEPSE 92 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSSCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 346899999999999999999999876443
No 280
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.31 E-value=0.00011 Score=65.98 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|||||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999997
No 281
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.28 E-value=0.00014 Score=65.92 Aligned_cols=26 Identities=27% Similarity=0.534 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|||||||++.|+|..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999973
No 282
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.28 E-value=8.8e-05 Score=63.19 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++|+|++|||||||++.|+|...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3589999999999999999998653
No 283
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.27 E-value=0.00014 Score=65.69 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|++|||||||++.|+|...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999764
No 284
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.27 E-value=0.00015 Score=65.62 Aligned_cols=27 Identities=30% Similarity=0.426 Sum_probs=24.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
..++|+|++|||||||++.|+|.. +.+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 579999999999999999999987 654
No 285
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.26 E-value=0.00011 Score=63.72 Aligned_cols=28 Identities=32% Similarity=0.496 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..|+|+|++|||||||++.|.|...
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998654
No 286
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.26 E-value=0.00016 Score=68.71 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~ 57 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLETITS 57 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999887654
No 287
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.26 E-value=5.2e-05 Score=66.11 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=25.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+|++|||||||+++|+|. .+.++
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G 50 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK 50 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH-HHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC-CCcCC
Confidence 457899999999999999999998 65553
No 288
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.25 E-value=0.00016 Score=68.18 Aligned_cols=30 Identities=30% Similarity=0.308 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCCCCCc
Confidence 345899999999999999999999877554
No 289
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.24 E-value=0.00017 Score=68.14 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 57 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIYKPTS 57 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCCCCCc
Confidence 345899999999999999999999877554
No 290
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.23 E-value=0.00017 Score=67.95 Aligned_cols=30 Identities=30% Similarity=0.324 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 40 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 69 (355)
T 1z47_A 40 EGEMVGLLGPSGSGKTTILRLIAGLERPTK 69 (355)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Confidence 346899999999999999999999887554
No 291
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.20 E-value=0.0002 Score=67.92 Aligned_cols=30 Identities=33% Similarity=0.396 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 65 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 65 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCCCCCc
Confidence 345889999999999999999999877554
No 292
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.20 E-value=0.00019 Score=60.24 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++++|+||||||||++.+.+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 346899999999999999998664
No 293
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.19 E-value=0.00015 Score=62.74 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++|||||||++.|.|..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999853
No 294
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.19 E-value=0.00015 Score=68.09 Aligned_cols=30 Identities=30% Similarity=0.334 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|+|+||||||||+++|+|...+.+
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~ 54 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFHVPDS 54 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSSCCSE
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCCCCCC
Confidence 345899999999999999999999887554
No 295
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.19 E-value=0.00027 Score=61.08 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=25.5
Q ss_pred CCCCCCCCCCC--CCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 1 MGERVINGDWK--PTSSSNGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 1 mg~~~~~~~~~--~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
||+|--..+.+ +.....++..|+|+|++||||||+++.|.+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 1 MGSSHHHHHHSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp -------------CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCccccccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 55544333222 23334456789999999999999999999853
No 296
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.18 E-value=0.00012 Score=64.61 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=17.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh-CCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL-GRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~-g~~ 43 (371)
++..|+|+|++|||||||++.|+ |..
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999999 864
No 297
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.17 E-value=0.00021 Score=78.65 Aligned_cols=30 Identities=30% Similarity=0.351 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++|||++|||||||++.|+|...+.+
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~~~~ 472 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYDVLK 472 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSCCSE
T ss_pred CCcEEEEEecCCCcHHHHHHHhcccccccc
Confidence 457899999999999999999999876554
No 298
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.17 E-value=0.046 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
..++|+|++|+|||+++..|.+..
T Consensus 192 ~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 192 NNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEcCCCCCHHHHHHHHHHHH
Confidence 458999999999999999998653
No 299
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.17 E-value=0.00074 Score=64.01 Aligned_cols=98 Identities=7% Similarity=0.031 Sum_probs=61.8
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+...+.......|++++|+|++++ +..+...+...++. .|+++|+||+|+.... ...+ .+.. .+...
T Consensus 59 f~~~l~~i~~~~~~il~VvD~~d~----~~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~-~~~~-~~~~----~l~~~ 125 (368)
T 3h2y_A 59 FLRILNGIGKSDALVVKIVDIFDF----NGSWLPGLHRFVGN---NKVLLVGNKADLIPKS-VKHD-KVKH----WMRYS 125 (368)
T ss_dssp HHHHHHHHHHSCCEEEEEEETTSH----HHHCCTTHHHHSSS---SCEEEEEECGGGSCTT-SCHH-HHHH----HHHHH
T ss_pred HHHHHHHHhccCcEEEEEEECCCC----cccHHHHHHHHhCC---CcEEEEEEChhcCCcc-cCHH-HHHH----HHHHH
Confidence 444455555677899999999842 33444556666553 4999999999987542 1111 1111 13334
Q ss_pred HHhcCC---ceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLCDN---RWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~~~---r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
....+. .++ ..||+++.|+++|++.+.....
T Consensus 126 ~~~~g~~~~~v~------~iSA~~g~gi~~L~~~l~~~~~ 159 (368)
T 3h2y_A 126 AKQLGLKPEDVF------LISAAKGQGIAELADAIEYYRG 159 (368)
T ss_dssp HHHTTCCCSEEE------ECCTTTCTTHHHHHHHHHHHHT
T ss_pred HHHcCCCcccEE------EEeCCCCcCHHHHHhhhhhhcc
Confidence 455554 233 3678889999999999987653
No 300
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.17 E-value=0.00021 Score=67.85 Aligned_cols=30 Identities=30% Similarity=0.387 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
+..++|+|+||||||||+++|+|...+.++
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 58 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLEEPSRG 58 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSCCSEE
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCCCCCcc
Confidence 458899999999999999999998876553
No 301
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.15 E-value=0.00019 Score=64.74 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..++|+|+||||||||+++|+|...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 3557899999999999999999998654
No 302
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.13 E-value=0.00015 Score=68.40 Aligned_cols=31 Identities=23% Similarity=0.280 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|+||||||||+++|+|...+.++
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G 60 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLDVPSTG 60 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSSCCSEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3458999999999999999999998876543
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.13 E-value=0.00026 Score=59.36 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.++..|+|+|++||||||+++.|.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3457899999999999999999875
No 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.10 E-value=0.00021 Score=65.92 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||+++|+|..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 44689999999999999999999754
No 305
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.10 E-value=0.00023 Score=63.41 Aligned_cols=35 Identities=20% Similarity=0.098 Sum_probs=22.4
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+.++.++... ++..|+|+|++|||||||++.|.|.
T Consensus 14 ~l~~isl~i~--~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 14 GTENLYFQSM--RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---------C--CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eecceeccCC--CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3444444333 3478999999999999999999874
No 306
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.09 E-value=0.00025 Score=61.59 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++||||||+++.|++..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 45689999999999999999999765
No 307
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.09 E-value=0.00038 Score=69.40 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|+||||||||+++|+|...+.++
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G 54 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGEIIPNFG 54 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSSCCCTT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 4568999999999999999999998776654
No 308
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.08 E-value=0.001 Score=60.68 Aligned_cols=103 Identities=13% Similarity=0.150 Sum_probs=58.5
Q ss_pred EEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 73 VIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 73 liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
|-+.||... ...+++... ...+|+|++|+|++.+.+.....+ ..+++. +|.++|+||+|+...
T Consensus 3 i~w~PGhm~------ka~~~~~~~----l~~aDvVl~VvDAr~p~~~~~~~l----~~~l~~---kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 3 IQWFPGHMA------KARREVTEK----LKLIDIVYELVDARIPMSSRNPMI----EDILKN---KPRIMLLNKADKADA 65 (282)
T ss_dssp ------CTT------HHHHHHHHH----GGGCSEEEEEEETTSTTTTSCHHH----HHHCSS---SCEEEEEECGGGSCH
T ss_pred CcCCchHHH------HHHHHHHHH----HhhCCEEEEEEeCCCCCccCCHHH----HHHHCC---CCEEEEEECcccCCH
Confidence 345688642 233444444 445699999999997766543322 233343 499999999998753
Q ss_pred chhhHHHHhcccCCchHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 153 NEKTLEDYLGLECPKPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 153 ~~~~l~~~l~~~~~~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
...+. +...+...+..++. .|+.++.|+.+|++.+..++.
T Consensus 66 --~~~~~---------~~~~~~~~g~~~i~------iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 66 --AVTQQ---------WKEHFENQGIRSLS------INSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp --HHHHH---------HHHHHHTTTCCEEE------CCTTTCTTGGGHHHHHHHHHH
T ss_pred --HHHHH---------HHHHHHhcCCcEEE------EECCCcccHHHHHHHHHHHHH
Confidence 22222 22233333444444 355567888888887776654
No 309
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.05 E-value=0.00026 Score=60.89 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|++||||||+++.|.+.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4568999999999999999999753
No 310
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.04 E-value=0.00029 Score=60.54 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..|+|+|++||||||+++.|.+..
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999999865
No 311
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.02 E-value=0.00031 Score=62.50 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=24.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh---CCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL---GRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~---g~~~~~ 46 (371)
...|+|+|++||||||+++.|+ |...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4689999999999999999999 876543
No 312
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.00 E-value=0.00034 Score=64.82 Aligned_cols=29 Identities=21% Similarity=0.129 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++..|+|+|++|||||||++.|.|...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 34567999999999999999999998654
No 313
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.99 E-value=0.00045 Score=68.93 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~ 49 (371)
.++-.++|+|+||||||||++.|+|...+.++.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 456789999999999999999999987665543
No 314
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.98 E-value=0.0018 Score=55.37 Aligned_cols=69 Identities=7% Similarity=0.013 Sum_probs=41.2
Q ss_pred CcEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCC
Q 040649 68 GQVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGG 147 (371)
Q Consensus 68 ~~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~ 147 (371)
...+.|||||+..+. .....+.. +|.+++++..+ ..+..-..+++.+...-......++.+|+|+.
T Consensus 75 ~yD~viiD~~~~~~~---------~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLSV---------ITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSSH---------HHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCCH---------HHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 457899999986531 11222222 48999999887 34434455555655432111123679999999
Q ss_pred CCC
Q 040649 148 DDL 150 (371)
Q Consensus 148 D~~ 150 (371)
|..
T Consensus 141 ~~~ 143 (206)
T 4dzz_A 141 IEM 143 (206)
T ss_dssp CTT
T ss_pred CCC
Confidence 843
No 315
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.96 E-value=0.00027 Score=77.61 Aligned_cols=30 Identities=30% Similarity=0.289 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++|+|++|||||||++.|+|...+.+
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~ 444 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 457899999999999999999999876544
No 316
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=96.95 E-value=0.00068 Score=64.33 Aligned_cols=101 Identities=9% Similarity=0.011 Sum_probs=60.0
Q ss_pred HHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHH
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEI 172 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~ 172 (371)
+...+.....+.+++++|+|++++.+ .+...+...++. +|+++|+||+|++... ...+ .+.. .+...
T Consensus 61 f~~~L~~~~~~~~lil~VvD~~d~~~----s~~~~l~~~l~~---~piilV~NK~DLl~~~-~~~~-~~~~----~l~~~ 127 (369)
T 3ec1_A 61 FLSMLHRIGESKALVVNIVDIFDFNG----SFIPGLPRFAAD---NPILLVGNKADLLPRS-VKYP-KLLR----WMRRM 127 (369)
T ss_dssp HHHHHHHHHHHCCEEEEEEETTCSGG----GCCSSHHHHCTT---SCEEEEEECGGGSCTT-CCHH-HHHH----HHHHH
T ss_pred HHHHHHHhhccCcEEEEEEECCCCCC----chhhHHHHHhCC---CCEEEEEEChhcCCCc-cCHH-HHHH----HHHHH
Confidence 33344444456689999999985432 233344454553 4999999999987541 1111 1111 13334
Q ss_pred HHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHh
Q 040649 173 LQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNV 209 (371)
Q Consensus 173 ~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~ 209 (371)
+...+.+.. +....||+++.|+.+|++.+.....
T Consensus 128 ~~~~g~~~~---~v~~iSA~~g~gi~~L~~~I~~~~~ 161 (369)
T 3ec1_A 128 AEELGLCPV---DVCLVSAAKGIGMAKVMEAINRYRE 161 (369)
T ss_dssp HHTTTCCCS---EEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred HHHcCCCcc---cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 555554210 1113678889999999999987654
No 317
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.95 E-value=0.00043 Score=65.48 Aligned_cols=29 Identities=31% Similarity=0.545 Sum_probs=25.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
++..++|+|+||||||||+++|+|...+.
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 45689999999999999999999976543
No 318
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.00051 Score=69.36 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~ 49 (371)
.++..++|+|+||+|||||++.|+|...+.++.
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~ 133 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR 133 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCCCCce
Confidence 456789999999999999999999988766543
No 319
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.94 E-value=0.75 Score=54.54 Aligned_cols=29 Identities=24% Similarity=0.440 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHH---HhCCCcccc
Q 040649 19 ERTVVLLGRTGNGKSATGNS---ILGRRAFKA 47 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~---L~g~~~~~~ 47 (371)
..+.++||..||||.||.+. ++|...|..
T Consensus 1646 ~GhaLLVGvgGSGkqSLtrLAa~i~~~~vfqi 1677 (3245)
T 3vkg_A 1646 QGHALLIGVSGGGKSVLSRFVAWMNGLSIYTI 1677 (3245)
T ss_dssp TCCEEEEESTTSSHHHHHHHHHHHTTCEEECC
T ss_pred CCCeEEecCCCCcHHHHHHHHHHHhCCeeEEE
Confidence 45799999999999999766 567666543
No 320
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.93 E-value=0.00031 Score=60.13 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++|+|++|+|||||++.|+|...
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc
Confidence 3689999999999999999998654
No 321
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=96.93 E-value=0.0024 Score=67.46 Aligned_cols=21 Identities=19% Similarity=0.154 Sum_probs=19.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 040649 19 ERTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L 39 (371)
+..++|+|++|+||||+++.+
T Consensus 662 g~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 662 QMFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp BCEEEEECCTTSSHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 468999999999999999999
No 322
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.92 E-value=0.00056 Score=58.74 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+..|+|+|.+||||||+.+.|.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999986
No 323
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=96.90 E-value=0.0018 Score=68.25 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..++|+||+|+|||||++.+.+.
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 468899999999999999998643
No 324
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.88 E-value=0.0017 Score=59.80 Aligned_cols=86 Identities=16% Similarity=0.159 Sum_probs=50.0
Q ss_pred hcCCceEEEEEEeCCCC-CCHHH-HHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcC
Q 040649 100 AKDGIHAVLLVFSVRSR-FSQEE-EAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCD 177 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~ 177 (371)
.+.++|++++|+|++++ ++... ..++..+.. .. .|+++|+||+|+..+ ..+. .... +.......+
T Consensus 76 ~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~--~~~ilV~NK~DL~~~--~~v~-~~~~-----~~~~~~~~g 142 (302)
T 2yv5_A 76 KVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FK--VEPVIVFNKIDLLNE--EEKK-ELER-----WISIYRDAG 142 (302)
T ss_dssp EEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TT--CEEEEEECCGGGCCH--HHHH-HHHH-----HHHHHHHTT
T ss_pred HHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CC--CCEEEEEEcccCCCc--cccH-HHHH-----HHHHHHHCC
Confidence 56788999999999865 35442 223333332 12 399999999998754 2111 0111 233333344
Q ss_pred CceEeecCcchhhHhhHHhHHHHHHHH
Q 040649 178 NRWVLFDNKTKYEAKRTEQVQQLLSLV 204 (371)
Q Consensus 178 ~r~~~f~~~~~~sa~~~~~i~~Ll~~i 204 (371)
..++. .||+++.|+++|++.+
T Consensus 143 ~~~~~------~SA~~g~gi~~L~~~l 163 (302)
T 2yv5_A 143 YDVLK------VSAKTGEGIDELVDYL 163 (302)
T ss_dssp CEEEE------CCTTTCTTHHHHHHHT
T ss_pred CeEEE------EECCCCCCHHHHHhhc
Confidence 34443 4666677777777653
No 325
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.88 E-value=0.0004 Score=59.02 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..++|+|++||||||+++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4689999999999999999986
No 326
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.86 E-value=0.0005 Score=59.09 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..|+|+|++||||||+++.|.+..
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998654
No 327
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.86 E-value=0.00067 Score=68.56 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=28.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCccccCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRAFKASA 49 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~~ 49 (371)
.++..++|+|+||+|||||++.|+|...+.++.
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 456789999999999999999999987766544
No 328
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=96.86 E-value=0.00056 Score=65.28 Aligned_cols=27 Identities=41% Similarity=0.452 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|+||||||||+++|+|...
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 456899999999999999999999764
No 329
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.83 E-value=0.00043 Score=57.72 Aligned_cols=23 Identities=35% Similarity=0.679 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|++||||||+++.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999864
No 330
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.83 E-value=0.00036 Score=65.16 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=24.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
+..++|+|+||||||||+++|+|...+.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 4579999999999999999999876543
No 331
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.82 E-value=0.00051 Score=59.98 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..++|+|+||||||||++.|+|...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3557899999999999999999998543
No 332
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.81 E-value=0.00062 Score=68.59 Aligned_cols=30 Identities=33% Similarity=0.486 Sum_probs=26.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 397 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRFYDIDE 397 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTTTCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccCCCC
Confidence 456899999999999999999999876554
No 333
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.78 E-value=0.00059 Score=64.37 Aligned_cols=27 Identities=33% Similarity=0.393 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+...|+|+|+||||||||+++|+|...
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 345899999999999999999998654
No 334
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.78 E-value=0.00066 Score=62.71 Aligned_cols=27 Identities=19% Similarity=0.169 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.++..|+|+|++|||||||++.|.|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999999753
No 335
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=96.77 E-value=0.0034 Score=65.00 Aligned_cols=26 Identities=19% Similarity=0.063 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|+||+|||||++.|.|...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~ 601 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIAL 601 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhh
Confidence 46899999999999999999988653
No 336
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=96.75 E-value=0.0033 Score=65.43 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=26.5
Q ss_pred CCCCCCCCCCCCCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 6 INGDWKPTSSSNGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 6 ~~~~~~~~~~~~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
+..+..+. .++..++|+|++|+|||||++.|.|..
T Consensus 597 vlndisl~---~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 597 IANPLNLS---PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CCEEEEEC---SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeeccccc---CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 33444444 344689999999999999999998754
No 337
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=96.75 E-value=0.00087 Score=66.75 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++..++|+|++|||||||+++|+|...+.++
T Consensus 293 ~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G 323 (538)
T 3ozx_A 293 EGEIIGILGPNGIGKTTFARILVGEITADEG 323 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3458999999999999999999998876553
No 338
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=96.74 E-value=0.00062 Score=68.81 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++..++++|++|||||||++.|+|...+.+
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 398 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 456899999999999999999999876544
No 339
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.72 E-value=0.00075 Score=58.19 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+|++||||||+++.|...
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999753
No 340
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.72 E-value=0.00084 Score=59.36 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=22.4
Q ss_pred CCCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 15 SSNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 15 ~~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
.-.++..++|+|+||||||||++.|+
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 33456789999999999999999998
No 341
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.69 E-value=0.00072 Score=64.21 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
.++..|+|+|+||||||||+++|+|...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3456899999999999999999998654
No 342
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.69 E-value=0.0011 Score=66.09 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|||||||+++|+|...+.++
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 341 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 341 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 3468999999999999999999998776553
No 343
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.68 E-value=0.00075 Score=59.46 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++..|+|+|++||||||+++.|.|.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 345679999999999999999999875
No 344
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.66 E-value=0.0011 Score=66.91 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
++-.++|+|++|+|||||++.|+|...+.++
T Consensus 381 ~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G 411 (607)
T 3bk7_A 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411 (607)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSSCCSBS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3468999999999999999999998776553
No 345
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.65 E-value=0.0054 Score=56.32 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=59.7
Q ss_pred cEEEEEeCCCCCCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCC-CHHH-HHHHHHHHHHhCCCCCCeEEEEEeC
Q 040649 69 QVVNVIDTPGLFDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRF-SQEE-EAAVHRLQTLFGKKIFDYMIVVFTG 146 (371)
Q Consensus 69 ~~i~liDTPG~~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~ilv~tk 146 (371)
..+.++|| ..... .....++.++|++|+|+|++++. +... ..++..+.. .. .|+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~--~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE--LETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT--CEEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC--CCEEEEEeH
Confidence 37889999 22111 11224677899999999998654 3322 233333332 12 399999999
Q ss_pred CCCCCCchhhHHHHhcccCCchHHHHHHhcC--CceEeecCcchhhHhhHHhHHHHHHHHH
Q 040649 147 GDDLEDNEKTLEDYLGLECPKPLKEILQLCD--NRWVLFDNKTKYEAKRTEQVQQLLSLVN 205 (371)
Q Consensus 147 ~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~--~r~~~f~~~~~~sa~~~~~i~~Ll~~i~ 205 (371)
+|+... ...++ ...+....+ ..++ ..||+++.|+++|+..+.
T Consensus 125 ~DL~~~--~~v~~---------~~~~~~~~~~~~~~~------~~SAktg~gv~~lf~~l~ 168 (301)
T 1u0l_A 125 MDLYDE--DDLRK---------VRELEEIYSGLYPIV------KTSAKTGMGIEELKEYLK 168 (301)
T ss_dssp GGGCCH--HHHHH---------HHHHHHHHTTTSCEE------ECCTTTCTTHHHHHHHHS
T ss_pred HHcCCc--hhHHH---------HHHHHHHHhhhCcEE------EEECCCCcCHHHHHHHhc
Confidence 997644 22211 122222222 2233 367888899999888753
No 346
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.62 E-value=0.00067 Score=57.11 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|++|+|||||+++|++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999987654
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.62 E-value=0.00045 Score=58.15 Aligned_cols=25 Identities=12% Similarity=0.220 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..|+|+|++|||||||++.|+|...
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4789999999999999999998654
No 348
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00058 Score=66.67 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++|+|++|||||||++.|+|...+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~ 166 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYALKFN 166 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTTHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcccccC
Confidence 456899999999999999999998765443
No 349
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.61 E-value=0.00089 Score=66.23 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|+||||||||+|+|+|...
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45699999999999999999998664
No 350
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.61 E-value=0.0008 Score=64.82 Aligned_cols=27 Identities=30% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..|+|+|+||||||||+++|+|...
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999998654
No 351
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.61 E-value=0.0012 Score=56.66 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+...|+|+|++||||||+.+.|.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH
Confidence 346899999999999999999974
No 352
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=96.59 E-value=0.0025 Score=69.96 Aligned_cols=30 Identities=27% Similarity=0.238 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++.+++|+|++|||||||++.|+|...+.+
T Consensus 1058 ~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~ 1087 (1284)
T 3g5u_A 1058 KGQTLALVGSSGCGKSTVVQLLERFYDPMA 1087 (1284)
T ss_dssp SSSEEEEECSSSTTHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 456899999999999999999999876554
No 353
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.59 E-value=0.0009 Score=63.30 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCccc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRAFK 46 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~~~ 46 (371)
..+++|+|++|||||||++.|+|...+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5789999999999999999999876543
No 354
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.58 E-value=0.011 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.509 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH
Confidence 357999999999999999999853
No 355
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.58 E-value=0.0012 Score=56.77 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999987
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.57 E-value=0.00076 Score=55.29 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|++|+|||||+++|++...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999997543
No 357
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.55 E-value=0.001 Score=58.03 Aligned_cols=23 Identities=17% Similarity=0.346 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.+|+|+|++||||||+++.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999753
No 358
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.53 E-value=0.0013 Score=61.07 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
....|+|+|++|||||||++.|.+..
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997643
No 359
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.53 E-value=0.0013 Score=56.58 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++..|+|+|++||||||+++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999864
No 360
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.52 E-value=0.0016 Score=65.78 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=25.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCccccC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKAS 48 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~~ 48 (371)
..++|+|++|||||||++.|+|...+.++
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G 407 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALKPDEG 407 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSCCSBC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 46899999999999999999998876654
No 361
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.52 E-value=0.0017 Score=55.94 Aligned_cols=28 Identities=18% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCCCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 14 SSSNGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 14 ~~~~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++...+..|+|.|.+||||||+++.|..
T Consensus 5 ~~~~~~~~I~l~G~~GsGKST~~~~L~~ 32 (212)
T 2wwf_A 5 DDKKKGKFIVFEGLDRSGKSTQSKLLVE 32 (212)
T ss_dssp CCCBCSCEEEEEESTTSSHHHHHHHHHH
T ss_pred chhhcCCEEEEEcCCCCCHHHHHHHHHH
Confidence 3344457899999999999999999863
No 362
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.52 E-value=0.00095 Score=65.32 Aligned_cols=28 Identities=25% Similarity=0.209 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
..++|+|++|||||||+++|+|...+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 57 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIPDL 57 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCCCT
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCCCC
Confidence 5789999999999999999998766544
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.51 E-value=0.0012 Score=56.18 Aligned_cols=21 Identities=29% Similarity=0.556 Sum_probs=19.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 040649 22 VVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~ 42 (371)
|+|+||+|||||||++.|+..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 889999999999999999744
No 364
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=96.48 E-value=0.0062 Score=55.82 Aligned_cols=27 Identities=26% Similarity=0.535 Sum_probs=18.2
Q ss_pred CCCCCCCeEEEEEcCCCCcHHHHHHHH
Q 040649 13 TSSSNGERTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 13 ~~~~~~~~~I~lvG~~GsGKSTlin~L 39 (371)
........+|+|+|..|+||||+.-.|
T Consensus 35 ~~~~~~~~vI~v~~KGGvGKTT~a~nL 61 (307)
T 3end_A 35 ADKITGAKVFAVYGKGGIGKSTTSSNL 61 (307)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHH
T ss_pred ccccCCceEEEEECCCCccHHHHHHHH
Confidence 333445578888899999999987544
No 365
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.45 E-value=0.018 Score=51.04 Aligned_cols=22 Identities=27% Similarity=0.518 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|++|+|||+++++|..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999975
No 366
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.44 E-value=0.0012 Score=56.59 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+|+|+|++||||||+++.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999986
No 367
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=96.43 E-value=0.0022 Score=55.45 Aligned_cols=106 Identities=8% Similarity=-0.042 Sum_probs=57.6
Q ss_pred HHHHHHhhhcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCC---CCCeEEEEEeCC-CCCCCchhhHHHHhcccCCc
Q 040649 92 EIAKCIGMAKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKK---IFDYMIVVFTGG-DDLEDNEKTLEDYLGLECPK 167 (371)
Q Consensus 92 ei~~~~~~~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~tk~-D~~~~~~~~l~~~l~~~~~~ 167 (371)
.+..++..++.+.|++|||+|.+++-....+..+..|..++... ...|++|+.||. |.... .+..+......
T Consensus 114 klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~A--ms~~EI~e~L~-- 189 (227)
T 3l82_B 114 SVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELH-- 189 (227)
T ss_dssp ---CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCB--CCHHHHHHHTT--
T ss_pred HHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCC--CCHHHHHHHcC--
Confidence 34555566677889999999987431111333333344444322 124888888985 55433 23332222100
Q ss_pred hHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 168 PLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 168 ~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.. .. |.+.+ ...||.++.|+.+-++++...+..
T Consensus 190 -L~~----l~-R~W~I---q~csA~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 190 -LNL----LN-HPWLV---QDTEAETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp -GGG----GC-SCEEE---EEEETTTCTTHHHHHHHHTTTTTT
T ss_pred -CcC----CC-CCEEE---EEeECCCCcCHHHHHHHHHHHHHh
Confidence 111 12 32222 235788899999999998765543
No 368
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.39 E-value=0.011 Score=56.81 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 206 prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 356999999999999999999853
No 369
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.39 E-value=0.0017 Score=53.64 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCcHHHHHHHH
Q 040649 20 RTVVLLGRTGNGKSATGNSI 39 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L 39 (371)
..|+|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 370
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.38 E-value=0.0014 Score=55.11 Aligned_cols=22 Identities=36% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..+|+|++|+|||||+.+|.+.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999998753
No 371
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.36 E-value=0.0015 Score=60.57 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
...++|+|++|||||||+|.|+|..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 4678999999999999999999864
No 372
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.36 E-value=0.002 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.285 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.+...|+|+|++|||||||++.|.+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 355789999999999999999988654
No 373
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.36 E-value=0.0012 Score=69.77 Aligned_cols=30 Identities=23% Similarity=0.310 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
++-+++|+|++|||||||++.|+|...+.+
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll~P~s 727 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTS 727 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSSCCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 345899999999999999999999876544
No 374
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=96.36 E-value=0.013 Score=62.66 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
+..++|+|++|+|||||++.+ |...
T Consensus 789 g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred CcEEEEECCCCCChHHHHHHH-HHHH
Confidence 468999999999999999999 6544
No 375
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.35 E-value=0.0016 Score=54.89 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 57899999999999999999865
No 376
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.33 E-value=0.002 Score=53.38 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999863
No 377
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.30 E-value=0.0023 Score=53.37 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 378
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.30 E-value=0.0023 Score=53.50 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999974
No 379
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.28 E-value=0.0028 Score=53.58 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...|+|+|.+||||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999998743
No 380
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.28 E-value=0.0015 Score=61.33 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
++-+++|+|++|+|||||++.|+|...+
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4568999999999999999999987653
No 381
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.023 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.534 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.-|+|.||||+|||+|++++++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 46999999999999999999853
No 382
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.24 E-value=0.0024 Score=53.70 Aligned_cols=22 Identities=27% Similarity=0.599 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|+|++||||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999987
No 383
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.24 E-value=0.0034 Score=53.69 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=21.4
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
......|+|+|.+||||||+.+.|.
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHH
Confidence 3345689999999999999999986
No 384
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.23 E-value=0.01 Score=55.37 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|+|++|+||||+++.|+|.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3999999999999999999873
No 385
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.22 E-value=0.002 Score=55.21 Aligned_cols=22 Identities=36% Similarity=0.741 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+++.|.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999864
No 386
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.21 E-value=0.014 Score=52.56 Aligned_cols=23 Identities=22% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|.|++|+|||+++++|.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999753
No 387
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.20 E-value=0.0027 Score=53.51 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|++||||||+++.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999863
No 388
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.20 E-value=0.0075 Score=55.50 Aligned_cols=50 Identities=20% Similarity=0.082 Sum_probs=33.1
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCC
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLED 152 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~ 152 (371)
....+|.+++|+|+..|..... .+-+.|....... .|.++|+||+|+.++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~--~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEAND--IQPIICITKMDLIED 132 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTT--CEEEEEEECGGGCCC
T ss_pred HHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCC--CCEEEEEECCccCch
Confidence 3567899999999985544443 3333443222222 388999999998866
No 389
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.19 E-value=0.005 Score=57.31 Aligned_cols=24 Identities=33% Similarity=0.511 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
..|+|+|++|||||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998543
No 390
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.18 E-value=0.0038 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.306 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|.+||||||+++.|.+.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 391
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.17 E-value=0.0034 Score=53.05 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|+|.+||||||+++.|.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999986
No 392
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.17 E-value=0.0025 Score=53.43 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|.+||||||+++.|.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999864
No 393
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.16 E-value=0.0019 Score=58.51 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=19.9
Q ss_pred EEEEcCCCCcHHHHHHHHhCC
Q 040649 22 VVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~ 42 (371)
++|+|++|+|||||+++|+|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999974
No 394
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.16 E-value=0.026 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCCceECCCCchHHHHHHHHHHH
Confidence 357999999999999999999854
No 395
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.15 E-value=0.0024 Score=55.59 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|+|||||++.|++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999854
No 396
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.14 E-value=0.003 Score=53.18 Aligned_cols=21 Identities=29% Similarity=0.650 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+++|++||||||+.+.|.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 397
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.12 E-value=0.0061 Score=52.80 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|.|++|+||||++..+...
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~ 68 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKG 68 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998743
No 398
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.09 E-value=0.0037 Score=53.30 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
....|+|+|++||||||+.+.|...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 3468999999999999999999854
No 399
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.09 E-value=0.0043 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.518 Sum_probs=20.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
....|+|+|+|||||+|....|..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 345678899999999999999873
No 400
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.07 E-value=0.0039 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+..|+|+|++||||||+++.|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346889999999999999999974
No 401
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.07 E-value=0.0037 Score=54.99 Aligned_cols=29 Identities=31% Similarity=0.473 Sum_probs=21.3
Q ss_pred CCCCCCCCeEEEEEcCCCCcHHHHHHHHh
Q 040649 12 PTSSSNGERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 12 ~~~~~~~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+.+.......|+|+|.+||||||+.+.|.
T Consensus 9 p~~~~~~~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 9 PVPESPKGVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp -----CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCCCeEEEEECCCCCCHHHHHHHHH
Confidence 33334445789999999999999999986
No 402
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.06 E-value=0.0027 Score=57.93 Aligned_cols=27 Identities=19% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..++|+|+||+|||||++.|+|...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999987654
No 403
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.06 E-value=0.0036 Score=54.44 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..|+|+|++||||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 404
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.03 Score=54.20 Aligned_cols=25 Identities=24% Similarity=0.531 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..-|+|.|+||+|||+|+++|++.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhc
Confidence 3457999999999999999999853
No 405
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.05 E-value=0.0023 Score=62.10 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCcc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRAF 45 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~~ 45 (371)
++-+++|+|++|+|||||++.|+|...+
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4568999999999999999999987653
No 406
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.02 E-value=0.004 Score=52.16 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|++||||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3579999999999999999987
No 407
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.01 E-value=0.0044 Score=50.68 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|++|+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999975
No 408
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.00 E-value=0.0036 Score=53.29 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|+|.+||||||+++.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999974
No 409
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.99 E-value=0.0037 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|.|++||||||+++.|..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 410
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=95.99 E-value=0.00044 Score=60.96 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCCcccc
Q 040649 21 TVVLLGRTGNGKSATGNSILGRRAFKA 47 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~~~~~ 47 (371)
.++|+|++|||||||+++|+|...+.+
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~ 55 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDL 55 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCT
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCC
Confidence 468899999999999999998765443
No 411
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=95.98 E-value=0.0027 Score=56.52 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 040649 22 VVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++|+|++|+|||||+++|++..
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998643
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.97 E-value=0.005 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 413
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.97 E-value=0.013 Score=56.47 Aligned_cols=24 Identities=17% Similarity=0.405 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..-|+|.||||+|||+|+++|++.
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHHH
Confidence 357999999999999999999854
No 414
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.96 E-value=0.0044 Score=52.49 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999986
No 415
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.92 E-value=0.0046 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..|+|.|.+||||||+++.|..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 36899999999999999999974
No 416
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.91 E-value=0.0049 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+|.+||||||+++.|...
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999743
No 417
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.086 Score=48.64 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+...|+|.|++|+|||+|++++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHH
T ss_pred CCceEEEECCCCccHHHHHHHHHHH
Confidence 3467999999999999999999853
No 418
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.0047 Score=52.13 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 679999999999999999885
No 419
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.87 E-value=0.041 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|.|++|+|||+++..+..
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 499999999999999999874
No 420
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.86 E-value=0.0032 Score=56.71 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=46.8
Q ss_pred hcCCceEEEEEEeCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCCCCCCCchhhHHHHhcccCCchHHHHHHhcCCc
Q 040649 100 AKDGIHAVLLVFSVRSRFSQEEEAAVHRLQTLFGKKIFDYMIVVFTGGDDLEDNEKTLEDYLGLECPKPLKEILQLCDNR 179 (371)
Q Consensus 100 ~~~~~d~vl~v~d~~~~~~~~~~~~l~~l~~~~~~~~~~~~ilv~tk~D~~~~~~~~l~~~l~~~~~~~l~~~~~~~~~r 179 (371)
....+|+|++|+|++.+++.....+ .. + .+|.++|+||+|+.+. ...+.+ ...+...+.+
T Consensus 18 ~l~~~D~vl~VvDar~P~~~~~~~l-~l----l----~k~~iivlNK~DL~~~--~~~~~~---------~~~~~~~g~~ 77 (262)
T 3cnl_A 18 LLRLVNTVVEVRDARAPFATSAYGV-DF----S----RKETIILLNKVDIADE--KTTKKW---------VEFFKKQGKR 77 (262)
T ss_dssp HHTTCSEEEEEEETTSTTTTSCTTS-CC----T----TSEEEEEEECGGGSCH--HHHHHH---------HHHHHHTTCC
T ss_pred HHhhCCEEEEEeeCCCCCcCcChHH-Hh----c----CCCcEEEEECccCCCH--HHHHHH---------HHHHHHcCCe
Confidence 3456699999999987665543211 11 1 2499999999998754 322222 2233333333
Q ss_pred eEeecCcchhhHhhHHhHHHHHHHHHH
Q 040649 180 WVLFDNKTKYEAKRTEQVQQLLSLVNA 206 (371)
Q Consensus 180 ~~~f~~~~~~sa~~~~~i~~Ll~~i~~ 206 (371)
+ . .|+.++.|+.+|++.+..
T Consensus 78 v-~------iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 78 V-I------TTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp E-E------ECCTTSCHHHHHHHHCCC
T ss_pred E-E------EECCCCcCHHHHHHHHHH
Confidence 3 3 345556777777766543
No 421
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.86 E-value=0.049 Score=49.32 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++|+|||+++++|.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 422
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.83 E-value=0.0035 Score=58.40 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
..++|+|++|+|||||++.|+|..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998753
No 423
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.83 E-value=0.0042 Score=53.58 Aligned_cols=24 Identities=13% Similarity=-0.015 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
++..++|+|++|+|||||+..|++
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 445899999999999999999987
No 424
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.83 E-value=0.004 Score=59.07 Aligned_cols=25 Identities=20% Similarity=0.319 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|+|||||++.|+|.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3458999999999999999999863
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.82 E-value=0.0052 Score=52.55 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....|+|+|.+||||||+.+.|.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999986
No 426
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.81 E-value=0.0054 Score=51.30 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...++|+|++|||||||++.|++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 357999999999999999998854
No 427
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.80 E-value=0.0036 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+.+|+|+|++||||||+++.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999975
No 428
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.78 E-value=0.0053 Score=58.01 Aligned_cols=20 Identities=35% Similarity=0.415 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.++|+|+|||||||++++|+
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999987
No 429
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.78 E-value=0.005 Score=53.20 Aligned_cols=20 Identities=35% Similarity=0.730 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 430
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.74 E-value=0.0059 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+..|+|+|.+||||||+++.|..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999873
No 431
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.74 E-value=0.0048 Score=51.50 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|++||||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999999999863
No 432
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=95.73 E-value=0.0039 Score=56.33 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHhCCC
Q 040649 22 VVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 22 I~lvG~~GsGKSTlin~L~g~~ 43 (371)
|+|+|++|+|||||+++|++..
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCcChHHHHHHHHHHHc
Confidence 8999999999999999998643
No 433
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.73 E-value=0.043 Score=49.14 Aligned_cols=24 Identities=29% Similarity=0.300 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
+...|+|.|++|+|||+++.+|..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999975
No 434
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.71 E-value=0.0048 Score=55.04 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
..+..|+|+|++||||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3447899999999999999999874
No 435
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.71 E-value=0.0048 Score=54.10 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..++|+|++|+|||||+..|++.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4568999999999999999999974
No 436
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.69 E-value=0.0057 Score=52.86 Aligned_cols=20 Identities=40% Similarity=0.787 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999986
No 437
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.69 E-value=0.0055 Score=53.29 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|++||||||+++.|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 438
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.68 E-value=0.0055 Score=52.93 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
++..|+|+|.+||||||+++.|.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999998754
No 439
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.66 E-value=0.0072 Score=52.32 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|.+||||||+++.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999974
No 440
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.65 E-value=0.0063 Score=51.62 Aligned_cols=22 Identities=18% Similarity=0.572 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999863
No 441
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.65 E-value=0.0046 Score=65.42 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|+||||||||++.|+|..
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG~ 485 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANGQ 485 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999643
No 442
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.65 E-value=0.0062 Score=54.42 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++|||||||.+.|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3689999999999999999864
No 443
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.64 E-value=0.0062 Score=53.19 Aligned_cols=21 Identities=29% Similarity=0.555 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|++||||||+++.|.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999986
No 444
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.63 E-value=0.0072 Score=53.57 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
+..+|+|+|++||||||+.+.|.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 45789999999999999999986
No 445
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.62 E-value=0.071 Score=51.15 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
....|+|+|.+||||||+.+.|+.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~ 280 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLV 280 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999974
No 446
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.62 E-value=0.0065 Score=52.50 Aligned_cols=66 Identities=17% Similarity=0.122 Sum_probs=38.4
Q ss_pred CcEEEEEeCCCC-CCCCcchHHHHHHHHHHHhhhcCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHhCCCCCCeEEEEEe
Q 040649 68 GQVVNVIDTPGL-FDSSAESEYVSKEIAKCIGMAKDGIHAVLLVFSVRSRFSQE-EEAAVHRLQTLFGKKIFDYMIVVFT 145 (371)
Q Consensus 68 ~~~i~liDTPG~-~~~~~~~~~~~~ei~~~~~~~~~~~d~vl~v~d~~~~~~~~-~~~~l~~l~~~~~~~~~~~~ilv~t 145 (371)
...+.|||||+. .+. .....+ ..+|.+|+++..+ ..+-. -..+++.+.... . .++.+|+|
T Consensus 67 ~yD~viiD~p~~~~~~---------~~~~~l----~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~--~~~~vv~N 128 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE---------DLEALA----DGCDLLVIPSTPD-ALALDALMLTIETLQKLG--N--NRFRILLT 128 (209)
T ss_dssp GCSEEEEEEECCCSSS---------HHHHHH----HTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--S--SSEEEEEC
T ss_pred cCCEEEEeCCCCcCcH---------HHHHHH----HHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--C--CCEEEEEE
Confidence 457899999986 432 011222 2458999988776 22211 233444444421 2 36889999
Q ss_pred CCCCCC
Q 040649 146 GGDDLE 151 (371)
Q Consensus 146 k~D~~~ 151 (371)
+.|...
T Consensus 129 ~~~~~~ 134 (209)
T 3cwq_A 129 IIPPYP 134 (209)
T ss_dssp SBCCTT
T ss_pred ecCCcc
Confidence 998654
No 447
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.61 E-value=0.002 Score=61.76 Aligned_cols=21 Identities=29% Similarity=0.303 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|+|+||+|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999988853
No 448
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.52 E-value=0.0034 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.|+|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999743
No 449
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.51 E-value=0.0063 Score=51.10 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=19.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999985
No 450
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.51 E-value=0.013 Score=55.76 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|+||||||||...|+
T Consensus 2 ~~~i~i~GptgsGKttla~~La 23 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLA 23 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHH
Confidence 3578999999999999999886
No 451
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.49 E-value=0.0079 Score=49.55 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|.|.+||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 452
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.47 E-value=0.044 Score=51.36 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhCCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.++|.|++|+||||+++.+++..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998643
No 453
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.47 E-value=0.0085 Score=53.65 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 454
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.47 E-value=0.0059 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=15.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|.|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CEEEEECCC----CHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999986
No 455
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.43 E-value=0.0082 Score=50.58 Aligned_cols=21 Identities=19% Similarity=0.447 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|.|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 456
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.43 E-value=0.0073 Score=49.98 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=19.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999986
No 457
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.39 E-value=0.0099 Score=49.46 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..++|+|++|+|||++++.+...
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998753
No 458
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.39 E-value=0.011 Score=53.62 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
....|+|+|.+||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999987
No 459
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.38 E-value=0.0079 Score=53.50 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+|++|+||||++++|.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999999999864
No 460
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.35 E-value=0.0085 Score=51.78 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
+|+|+|++||||||+.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 461
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.35 E-value=0.009 Score=50.53 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|.|.+||||||+++.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999863
No 462
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.35 E-value=0.01 Score=54.64 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|+||||||||||...|+..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 57899999999999999999743
No 463
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.34 E-value=0.012 Score=51.69 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.+..|+|.|++||||||+++.|...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999754
No 464
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.33 E-value=0.0096 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHh
Q 040649 19 ERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~ 40 (371)
...|+|+|++||||||+.+.|.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999997
No 465
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.33 E-value=0.011 Score=50.96 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|++|+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 466889999999999999874
No 466
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.32 E-value=0.0053 Score=61.17 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
++..|+|+|++|||||||++.|.|...
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhc
Confidence 457899999999999999999997654
No 467
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.31 E-value=0.0075 Score=54.52 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 16 SNGERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 16 ~~~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
-.++..++|+|++|+|||||+..|++
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34566899999999999999999886
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.28 E-value=0.0089 Score=52.56 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g 41 (371)
.+..|+|+|++||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999874
No 469
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.26 E-value=0.01 Score=48.99 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
.+|+|.|.+||||||+.+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 589999999999999999985
No 470
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.24 E-value=0.0089 Score=51.86 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
..|+|+|.+||||||+.+.|.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999985
No 471
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.21 E-value=0.011 Score=51.67 Aligned_cols=20 Identities=30% Similarity=0.733 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
.|+|+|++||||||+++.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999985
No 472
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.18 E-value=0.012 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++||||||+.+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999864
No 473
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.13 E-value=0.011 Score=51.02 Aligned_cols=21 Identities=29% Similarity=0.558 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
+|+|+|+|||||+|....|..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999874
No 474
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.13 E-value=0.013 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.366 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 17 NGERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 17 ~~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
.+...++|+|++|+|||+++++|.+..
T Consensus 45 ~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 45 RPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 344579999999999999999998643
No 475
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=95.08 E-value=0.0096 Score=57.47 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCCCc
Q 040649 20 RTVVLLGRTGNGKSATGNSILGRRA 44 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~~~ 44 (371)
..++|+|++|+|||||+++|.+...
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhhc
Confidence 5789999999999999999986543
No 476
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.06 E-value=0.0097 Score=56.04 Aligned_cols=21 Identities=19% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.++|+|++|+||||++++|.+
T Consensus 28 ~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHH
Confidence 789999999999999999874
No 477
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.06 E-value=0.0069 Score=61.99 Aligned_cols=23 Identities=35% Similarity=0.423 Sum_probs=19.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++..++|+|+||||||||++.|+
T Consensus 347 ~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 347 LGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TTSEEEEECSTTSSHHHHHTTTH
T ss_pred CCCEEEEEeeCCCCHHHHHHHHH
Confidence 34688999999999999998764
No 478
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=95.05 E-value=0.2 Score=45.79 Aligned_cols=21 Identities=14% Similarity=0.317 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.+++.|++|+|||+++.++..
T Consensus 50 ~~L~~G~~G~GKT~la~~la~ 70 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCH 70 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHH
T ss_pred EEEeeCcCCCCHHHHHHHHHH
Confidence 456667799999999999963
No 479
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.03 E-value=0.018 Score=53.88 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhCC
Q 040649 21 TVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g~ 42 (371)
.++|.|++|+||||+++.+...
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~ 61 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKG 61 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999988643
No 480
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.99 E-value=0.02 Score=52.22 Aligned_cols=23 Identities=22% Similarity=0.304 Sum_probs=20.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...++|.|+||+|||+|+++|+.
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35678889999999999999974
No 481
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.98 E-value=0.014 Score=50.75 Aligned_cols=24 Identities=17% Similarity=0.285 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...++|.|++|+||||+++.+...
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998743
No 482
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.97 E-value=0.069 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++|+|||+|+.+|+.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~ 170 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAA 170 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999964
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.95 E-value=0.011 Score=55.36 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~~ 43 (371)
++..++|+|++|+|||||++.|++..
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999765
No 484
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.91 E-value=0.015 Score=49.54 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHhCC
Q 040649 20 RTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
..|+|.|++|+|||+|+.+|...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998853
No 485
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.89 E-value=0.016 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=18.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHh
Q 040649 20 RTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~ 40 (371)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 355899999999999999974
No 486
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.84 E-value=0.013 Score=48.63 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...++|+|++|+|||+++..+...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999988743
No 487
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.83 E-value=0.012 Score=58.46 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHH--HhCCC
Q 040649 18 GERTVVLLGRTGNGKSATGNS--ILGRR 43 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~--L~g~~ 43 (371)
++..++|+|+||||||||++. +.|..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999 45544
No 488
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=94.78 E-value=0.014 Score=53.40 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
...|+|.|++|+|||+++++|.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CceEEEECCCCcCHHHHHHHHHHH
Confidence 357999999999999999999853
No 489
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.74 E-value=0.02 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 18 GERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+...|+|.|++|+|||++++++...
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~ 90 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGL 90 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999887643
No 490
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.71 E-value=0.014 Score=53.92 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHh
Q 040649 21 TVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~ 40 (371)
..+|+|+||+|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 67899999999999999987
No 491
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.70 E-value=0.022 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|+||||||||...|..
T Consensus 11 ~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHH
Confidence 5789999999999999999873
No 492
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.65 E-value=0.019 Score=52.27 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999874
No 493
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.65 E-value=0.018 Score=49.05 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhC
Q 040649 21 TVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 21 ~I~lvG~~GsGKSTlin~L~g 41 (371)
.|+|.|++||||||+.+.|.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999854
No 494
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.61 E-value=0.022 Score=52.65 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++||||||+...|..
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999874
No 495
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.55 E-value=0.024 Score=48.63 Aligned_cols=24 Identities=33% Similarity=0.491 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhCC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILGR 42 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g~ 42 (371)
+..|+|+|+||+|||||...|...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467899999999999999999744
No 496
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.53 E-value=0.013 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=17.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHhC
Q 040649 19 ERTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 19 ~~~I~lvG~~GsGKSTlin~L~g 41 (371)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999863
No 497
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=94.47 E-value=0.019 Score=52.15 Aligned_cols=103 Identities=9% Similarity=-0.039 Sum_probs=55.9
Q ss_pred HHHHHhhhcCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHhCCC---CCCeEEEEEeC-CCCCCCchhhHHHHhcccCC
Q 040649 93 IAKCIGMAKDGIHAVLLVFSVRS--RFSQEEEAAVHRLQTLFGKK---IFDYMIVVFTG-GDDLEDNEKTLEDYLGLECP 166 (371)
Q Consensus 93 i~~~~~~~~~~~d~vl~v~d~~~--~~~~~~~~~l~~l~~~~~~~---~~~~~ilv~tk-~D~~~~~~~~l~~~l~~~~~ 166 (371)
+...+..++.+.|++|||||.++ ++. ....+..|..++... ...|++|+.|| -|.... .+..+......
T Consensus 200 lRplWr~Yy~~tdglIfVVDSsDreRle--ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A--ms~~EI~e~L~- 274 (312)
T 3l2o_B 200 VIPQIQKVCEVVDGFIYVANAEAHKRHE--WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR--MPCFYLAHELH- 274 (312)
T ss_dssp CCHHHHHHHHHCSEEEECCBCBTTCCCC--HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB--CCHHHHHHHTT-
T ss_pred HHHHHHHHhcCCCEEEEEecCCcHhHHH--HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC--CCHHHHHHHcC-
Confidence 34445556677899999999873 444 222222222222110 11388888896 466543 23322222100
Q ss_pred chHHHHHHhcCCceEeecCcchhhHhhHHhHHHHHHHHHHHHhh
Q 040649 167 KPLKEILQLCDNRWVLFDNKTKYEAKRTEQVQQLLSLVNAVNVK 210 (371)
Q Consensus 167 ~~l~~~~~~~~~r~~~f~~~~~~sa~~~~~i~~Ll~~i~~~~~~ 210 (371)
+.. .. +.+.+ ...||.+|.|+.+-++++.+.+..
T Consensus 275 --L~~----l~-r~W~I---q~csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 275 --LNL----LN-HPWLV---QDTEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp --GGG----GC-SCEEE---EEEETTTCTTHHHHHHHHHHHSCC
T ss_pred --Ccc----CC-CcEEE---EecccCCCcCHHHHHHHHHHHHHh
Confidence 111 12 22222 235788899999999999877653
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.45 E-value=0.021 Score=53.15 Aligned_cols=22 Identities=23% Similarity=0.377 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHhC
Q 040649 20 RTVVLLGRTGNGKSATGNSILG 41 (371)
Q Consensus 20 ~~I~lvG~~GsGKSTlin~L~g 41 (371)
..|+|+|++|||||||...|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5799999999999999998864
No 499
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.43 E-value=0.017 Score=59.02 Aligned_cols=19 Identities=42% Similarity=0.611 Sum_probs=17.0
Q ss_pred CCeEEEEEcCCCCcHHHHH
Q 040649 18 GERTVVLLGRTGNGKSATG 36 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTli 36 (371)
++..++|+|+||||||||+
T Consensus 43 ~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 43 RGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTSEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHh
Confidence 4568999999999999996
No 500
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.39 E-value=0.024 Score=49.63 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=19.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHh
Q 040649 18 GERTVVLLGRTGNGKSATGNSIL 40 (371)
Q Consensus 18 ~~~~I~lvG~~GsGKSTlin~L~ 40 (371)
++..++|+|++|+|||||+..++
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 44578999999999999976664
Done!