BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040650
(136 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 62/125 (49%), Gaps = 12/125 (9%)
Query: 1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEI--ASSESLA 58
+H A G EVV L L+ + +D TPLH AA +G V+ + A ++ A
Sbjct: 6 LHLAARNGHLEVVKLL--LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63
Query: 59 KLTSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIV 117
K N T L LA +N ++ K+L+E +A DK G + LHLAA N L V
Sbjct: 64 K-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEV 116
Query: 118 VKILM 122
VK+L+
Sbjct: 117 VKLLL 121
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 34 TPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
TPLH AA +G V+ + A ++ AK N T L LA +N ++ K+L+E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 92 LEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
+A DK G + LHLAA N L VVK+L+
Sbjct: 61 ----VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 63 NDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
N T L LA +N ++ K+L+E +A DK G + LHLAA N L VVK+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 122 M 122
+
Sbjct: 55 L 55
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 10/92 (10%)
Query: 34 TPLHRAAVDGDGGVITEI--ASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
TPLH AA +G V+ + A ++ AK N T L LA +N ++ K+L+E
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD-- 60
Query: 92 LEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
+A DK G + LHLAA N L VVK+L+
Sbjct: 61 ----VNAKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 34.7 bits (78), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 63 NDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKIL 121
N T L LA +N ++ K+L+E +A DK G + LHLAA N L VVK+L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 122 M 122
+
Sbjct: 55 L 55
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 1 MHKALVEGDGEVVHFLGKLDLESRPVVEDNGLMTPLHRAAVDGDGGVITEIASSESLAKL 60
+H A ++GD V +L L S P V+D+ TPLH A G V+ + ++L
Sbjct: 14 LHIASIKGDIPSVEYL--LQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71
Query: 61 TS-NDETALILAVKNSQIDAFKILMEETKRHNLEHLF 96
T +++ L A KN +D K+L+ N ++F
Sbjct: 72 TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIF 108
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 34 TPLHRAAVDGDGGVITEIASSESLAKLTSND-ETALILAVKNSQIDAFKILMEETKRHNL 92
TPLH AA +G + ++ S + S D T L LA KN + K+L+ +
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67
Query: 93 EHLFSATDKEGNSILHLAALN 113
+A K+GN+ HLA N
Sbjct: 68 ---VNARSKDGNTPEHLAKKN 85
Score = 26.6 bits (57), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 61 TSNDETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLI-VVK 119
+ + T L A KN + K L+ + +A K+GN+ LHLAA N +VK
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPLHLAAKNGHAEIVK 59
Query: 120 ILMLR 124
+L+ +
Sbjct: 60 LLLAK 64
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.0 bits (71), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 7/79 (8%)
Query: 34 TPLHRAAVDGDGGVITEIASSESLAKLTSNDE-TALILAVKNSQIDAFKILMEETKRHNL 92
+PLH AA G + + + + S D+ T L+ A +N+ ++A K L++
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGA---- 68
Query: 93 EHLFSATDKEGNSILHLAA 111
L D EG++ LHLAA
Sbjct: 69 --LVDPKDAEGSTCLHLAA 85
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.6 bits (70), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 57/99 (57%), Gaps = 13/99 (13%)
Query: 28 EDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDE---TALILAVKNSQIDAFKILM 84
+DNGL TPLH AA +G ++ + + A + ++D T L LA + ++ ++L+
Sbjct: 36 DDNGL-TPLHLAAANGQLEIVEVLLKNG--ADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 85 EETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
+H + +A D+ G + LHLAAL+ +L +V++L+
Sbjct: 93 ----KHGAD--VNAYDRAGWTPLHLAALSGQLEIVEVLL 125
Score = 26.2 bits (56), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
L+ A Q D +ILM N ATD G + LHLAA N +L +V++L+
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVN------ATDDNGLTPLHLAAANGQLEIVEVLL 59
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 29.3 bits (64), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM 122
L+ A + Q D +ILM +A DK G++ LHLAA N L VVK+L+
Sbjct: 28 LLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2PQN|B Chain B, Crystal Structure Of Yeast Fis1 Complexed With A
Fragment Of Yeast Mdv1
Length = 54
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 41 VDGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHN 91
+D DG ++TE +E+L K S ET+L K S + ++ +E T+R N
Sbjct: 4 MDADGKLLTEGGENENLRKNASKKETSLFQGFK-SYLPIAELAIENTERLN 53
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 28.9 bits (63), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM 122
L+ A + Q D +ILM +A DK G++ LHLAA N L VVK+L+
Sbjct: 10 LLEAARAGQDDEVRILMANGAD------VAAKDKNGSTPLHLAARNGHLEVVKLLL 59
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILMLRML 126
LI A +N D K L+E N A+D +G + LHLAA N VVK+L+ +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVN------ASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 127 YP 128
P
Sbjct: 62 DP 63
>pdb|3UUX|B Chain B, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
pdb|3UUX|D Chain D, Crystal Structure Of Yeast Fis1 In Complex With Mdv1
Fragment Containing N-Terminal Extension And Coiled Coil
Domains
Length = 242
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 42 DGDGGVITEIASSESLAKLTSNDETALILAVKNSQIDAFKILMEETKRHNLE 93
D DG ++TE +E+L K S ET+L K S + ++ +E T+R N +
Sbjct: 50 DADGKLLTEGGENENLRKNASKKETSLFQGFK-SYLPIAELAIENTERLNYD 100
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 7/56 (12%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA-LNKLIVVKILM 122
L+ A + Q D +ILM N A D++GN+ LHLAA + L +V++L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN------ANDRKGNTPLHLAADYDHLEIVEVLL 67
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 27.7 bits (60), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 29 DNGLMTPLHRAAVDGDGGVIT-EIASSESLAKLTSNDETALILAVKNSQIDAFKILMEET 87
D+ TPLH AA +G V+ I+ + S+ T L A +N + K+L+ +
Sbjct: 34 DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKG 93
Query: 88 KRHNLEHLFSATDKEGNSILHLAALN-KLIVVKILMLR 124
+A D +G + LH AA N VVK+L+ +
Sbjct: 94 AD------VNAKDSDGRTPLHHAAENGHKEVVKLLISK 125
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALN-KLIVVKILM 122
L+ A + Q D +ILM N ATD +G + LHLAA N L +V++L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVN------ATDNDGYTPLHLAASNGHLEIVEVLL 67
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 12/98 (12%)
Query: 29 DNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDETALI---LAVKNSQIDAFKILME 85
DN TPLH AA +G ++ + + A + ++D T + LA ++ ++L+
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNG--ADVNASDLTGITPLHLAAATGHLEIVEVLL- 100
Query: 86 ETKRHNLEHLFSATDKEGNSILHLAA-LNKLIVVKILM 122
+H + +A D +G++ LHLAA L +V++L+
Sbjct: 101 ---KHGAD--VNAYDNDGHTPLHLAAKYGHLEIVEVLL 133
>pdb|2BL0|B Chain B, Physarum Polycephalum Myosin Ii Regulatory Domain
Length = 145
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 11/87 (12%)
Query: 42 DGDGGV-ITEIASS-ESLAKLTSNDETALI---LAVKNSQIDAFKILMEETKRHNLEH-- 94
D DG V I E+ S+ SL K +N E I L K + FK + + + E
Sbjct: 17 DNDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPIKTPTEQSK 76
Query: 95 ----LFSATDKEGNSILHLAALNKLIV 117
F A DKEGN + A L +L++
Sbjct: 77 EMLDAFRALDKEGNGTIQEAELRQLLL 103
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 65 ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
ETAL LA + S+ DA K L+E + N++ D G + LH A
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAA 98
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 65 ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
ETAL LA + S+ DA K L+E + N++ D G + LH A
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAA 97
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 26.6 bits (57), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 65 ETALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLA 110
ETAL LA + S+ DA K L+E + N++ D G + LH A
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQ------DNMGRTPLHAA 65
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKI 120
+ A K+ +T+R +LEH +T+K S++H AL K K+
Sbjct: 16 VPADKLWGAQTQR-SLEHFRISTEKMPTSLIHALALTKRAAAKV 58
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKI 120
+ A K+ +T+R +LEH +T+K S++H AL K K+
Sbjct: 16 VPADKLWGAQTQR-SLEHFRISTEKMPTSLIHALALTKRAAAKV 58
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKI 120
+ A K+ +T+R +LEH +T+K S++H AL K K+
Sbjct: 16 VPADKLWGAQTQR-SLEHFRISTEKMPTSLIHALALTKRAAAKV 58
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 26.6 bits (57), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKI 120
+ A K+ +T+R +LEH +T+K S++H AL K K+
Sbjct: 16 VPADKLWGAQTQR-SLEHFRISTEKMPTSLIHALALTKRAAAKV 58
>pdb|2NYC|A Chain A, Crystal Structure Of The Bateman2 Domain Of Yeast Snf4
Length = 144
Score = 26.6 bits (57), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 11 EVVHFLGKLDLESRPVVEDNGLMTPLHRAA-VDG--DGGVITEIASS--ESLAKLTSNDE 65
+V+ L + + S P++++NG + ++ A V G GG+ +++ S E+L + S+D
Sbjct: 32 DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR-RSDDF 90
Query: 66 TALILAVKNSQIDAFKILMEETKRHNLEHLFSATD 100
+ KN D +M+ ++ + F D
Sbjct: 91 EGVYTCTKN---DKLSTIMDNIRKARVHRFFVVDD 122
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 26.2 bits (56), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 77 IDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNKLIVVKI 120
+ A K+ +T+R +LEH +T+K S++H AL K K+
Sbjct: 16 VPADKLWGAQTQR-SLEHFRISTEKMPTSLIHALALTKRAAAKV 58
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 27 VEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDE-TALILAVKNSQIDAFKILME 85
+D TPLH AA +G ++ + + + D T L LA + ++ ++L++
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 86 ETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKILM 122
N A DK+G + LHLAA L +V++L+
Sbjct: 90 AGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 121
>pdb|2QLV|C Chain C, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
pdb|2QLV|F Chain F, Crystal Structure Of The Heterotrimer Core Of The S.
Cerevisiae Ampk Homolog Snf1
Length = 315
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 11 EVVHFLGKLDLESRPVVEDNGLMTPLHRAA-VDG--DGGVITEIASS--ESLAKLTSNDE 65
+V+ L + + S P++++NG + ++ A V G GG+ +++ S E+L + S+D
Sbjct: 204 DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR-RSDDF 262
Query: 66 TALILAVKNSQIDAFKILMEETKRHNLEHLFSATD 100
+ KN D +M+ ++ + F D
Sbjct: 263 EGVYTCTKN---DKLSTIMDNIRKARVHRFFVVDD 294
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 26.2 bits (56), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 71 AVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAA 111
A + Q+D + L+E N+E D EGN LHLAA
Sbjct: 77 AARAGQLDTLQTLLEFQADVNIE------DNEGNLPLHLAA 111
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 10/69 (14%)
Query: 58 AKLTSNDE---TALILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAAL-N 113
A + +ND T L L V N ++ ++L++ N A+DK G + LHLAA
Sbjct: 38 ADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN------ASDKSGWTPLHLAAYRG 91
Query: 114 KLIVVKILM 122
L +V++L+
Sbjct: 92 HLEIVEVLL 100
>pdb|3T4N|C Chain C, Structure Of The Regulatory Fragment Of Saccharomyces
Cerevisiae Ampk In Complex With Adp
pdb|3TDH|C Chain C, Structure Of The Regulatory Fragment Of Sccharomyces
Cerevisiae Ampk In Complex With Amp
pdb|3TE5|C Chain C, Structure Of The Regulatory Fragment Of Sacchromyces
Cerevisiae Ampk In Complex With Nadh
Length = 323
Score = 25.8 bits (55), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 11 EVVHFLGKLDLESRPVVEDNGLMTPLHRAA-VDG--DGGVITEIASS--ESLAKLTSNDE 65
+V+ L + + S P++++NG + ++ A V G GG+ +++ S E+L + S+D
Sbjct: 211 DVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMR-RSDDF 269
Query: 66 TALILAVKNSQIDAFKILMEETKRHNLEHLFSATD 100
+ KN D +M+ ++ + F D
Sbjct: 270 EGVYTCTKN---DKLSTIMDNIRKARVHRFFVVDD 301
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 68 LILAVKNSQIDAFKILMEETKRHNLEHLFSATDKEGNSILHLAALNK-LIVVKILM 122
L+ A + Q D +ILM N E DK G + LHLAA+N L +V++L+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE------DKVGLTPLHLAAMNDHLEIVEVLL 67
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 12/93 (12%)
Query: 35 PLHRAAVDGDGGVITEIASSESLAKLTSND---ETALILAVKNSQIDAFKILMEETKRHN 91
PLH A G V+ + S AK D T LI A + +L++ N
Sbjct: 122 PLHLACQQGHFQVVKCLLDSN--AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN 179
Query: 92 LEHLFSATDKEGNSILHLAALNK-LIVVKILML 123
A++ +GN+ LH A + K + VV++L+L
Sbjct: 180 ------ASNNKGNTALHEAVIEKHVFVVELLLL 206
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 47/98 (47%), Gaps = 8/98 (8%)
Query: 27 VEDNGLMTPLHRAAVDGDGGVITEIASSESLAKLTSNDE-TALILAVKNSQIDAFKILME 85
+D TPLH AA +G ++ + + + D T L LA + ++ ++L++
Sbjct: 30 AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 86 ETKRHNLEHLFSATDKEGNSILHLAAL-NKLIVVKILM 122
N A DK+G + LHLAA L +V++L+
Sbjct: 90 AGADVN------AKDKDGYTPLHLAAREGHLEIVEVLL 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,491,534
Number of Sequences: 62578
Number of extensions: 121446
Number of successful extensions: 404
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 79
length of query: 136
length of database: 14,973,337
effective HSP length: 88
effective length of query: 48
effective length of database: 9,466,473
effective search space: 454390704
effective search space used: 454390704
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 46 (22.3 bits)