Query 040653
Match_columns 228
No_of_seqs 197 out of 1287
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 16:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k9n_A MYB24; R2R3 domain, DNA 99.9 2E-24 6.7E-29 167.5 5.8 71 1-75 35-105 (107)
2 1gv2_A C-MYB, MYB proto-oncoge 99.9 4.8E-24 1.6E-28 164.1 6.5 68 1-72 38-105 (105)
3 3zqc_A MYB3; transcription-DNA 99.9 8.2E-24 2.8E-28 169.3 7.6 74 1-78 36-109 (131)
4 3osg_A MYB21; transcription-DN 99.9 5.6E-23 1.9E-27 163.6 6.4 67 1-71 44-110 (126)
5 1h8a_C AMV V-MYB, MYB transfor 99.9 5.3E-23 1.8E-27 163.7 6.3 68 1-72 61-128 (128)
6 1h89_C C-MYB, MYB proto-oncoge 99.8 9.5E-22 3.3E-26 161.5 6.1 68 1-72 92-159 (159)
7 1h8a_C AMV V-MYB, MYB transfor 99.8 9.7E-22 3.3E-26 156.4 4.7 75 1-79 9-84 (128)
8 1h89_C C-MYB, MYB proto-oncoge 99.8 6.4E-21 2.2E-25 156.6 6.0 75 1-79 40-115 (159)
9 2llk_A Cyclin-D-binding MYB-li 99.8 8.8E-21 3E-25 139.2 3.8 58 6-68 10-67 (73)
10 2din_A Cell division cycle 5-l 99.8 2E-19 6.9E-24 128.3 4.8 62 11-77 1-62 (66)
11 2cu7_A KIAA1915 protein; nucle 99.7 1.1E-18 3.6E-23 126.8 5.5 58 13-74 3-60 (72)
12 2d9a_A B-MYB, MYB-related prot 99.7 4.4E-18 1.5E-22 119.1 4.1 55 14-72 3-58 (60)
13 2dim_A Cell division cycle 5-l 99.7 1.1E-17 3.8E-22 120.5 5.1 64 14-81 4-68 (70)
14 1guu_A C-MYB, MYB proto-oncoge 99.7 2.6E-17 8.7E-22 112.0 4.3 50 17-70 1-51 (52)
15 1gvd_A MYB proto-oncogene prot 99.7 4.7E-17 1.6E-21 110.8 4.7 50 17-70 1-51 (52)
16 1ity_A TRF1; helix-turn-helix, 99.7 5.8E-17 2E-21 116.6 5.2 61 11-75 2-65 (69)
17 1x41_A Transcriptional adaptor 99.6 1E-16 3.4E-21 112.6 4.1 53 14-70 3-56 (60)
18 1w0t_A Telomeric repeat bindin 99.6 1.7E-16 5.8E-21 108.6 4.4 49 18-70 1-52 (53)
19 2yum_A ZZZ3 protein, zinc fing 99.6 3.1E-16 1.1E-20 114.2 4.9 57 14-74 3-65 (75)
20 2ltp_A Nuclear receptor corepr 99.4 4.3E-17 1.5E-21 123.2 0.0 57 11-71 8-64 (89)
21 2elk_A SPCC24B10.08C protein; 99.6 1.5E-15 5.2E-20 106.0 4.5 51 13-67 3-55 (58)
22 3sjm_A Telomeric repeat-bindin 99.6 1.3E-15 4.4E-20 108.7 4.2 52 17-72 9-63 (64)
23 1gv2_A C-MYB, MYB proto-oncoge 99.5 2.5E-14 8.7E-19 109.6 4.8 59 16-78 1-60 (105)
24 3osg_A MYB21; transcription-DN 99.5 3.6E-14 1.2E-18 112.7 4.8 65 13-81 5-69 (126)
25 2cqr_A RSGI RUH-043, DNAJ homo 99.5 4E-14 1.4E-18 103.7 4.6 52 14-69 13-68 (73)
26 2yus_A SWI/SNF-related matrix- 99.4 1.1E-13 3.9E-18 102.5 4.4 48 16-67 15-62 (79)
27 1ign_A Protein (RAP1); RAP1,ye 99.4 9.2E-14 3.1E-18 122.0 4.4 55 15-73 4-64 (246)
28 1x58_A Hypothetical protein 49 99.4 2.3E-13 7.8E-18 96.8 4.7 50 17-70 6-58 (62)
29 2k9n_A MYB24; R2R3 domain, DNA 99.4 2.5E-13 8.5E-18 104.8 4.1 57 19-79 1-58 (107)
30 3zqc_A MYB3; transcription-DNA 99.4 3.9E-13 1.3E-17 107.2 4.5 59 19-81 2-61 (131)
31 2juh_A Telomere binding protei 99.3 6.9E-13 2.3E-17 105.8 5.2 55 13-71 11-70 (121)
32 2ckx_A NGTRF1, telomere bindin 99.3 7.5E-13 2.6E-17 99.1 4.7 49 20-72 1-54 (83)
33 2aje_A Telomere repeat-binding 99.3 1.5E-12 5.2E-17 101.4 5.4 54 14-71 8-66 (105)
34 2cjj_A Radialis; plant develop 99.2 5E-12 1.7E-16 96.5 4.6 50 18-71 7-60 (93)
35 2roh_A RTBP1, telomere binding 99.2 8.4E-12 2.9E-16 99.6 4.8 53 15-71 27-84 (122)
36 3hm5_A DNA methyltransferase 1 99.1 3.6E-11 1.2E-15 91.8 5.4 63 5-75 20-87 (93)
37 2eqr_A N-COR1, N-COR, nuclear 99.1 6.1E-11 2.1E-15 83.4 4.1 46 18-64 11-56 (61)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.9 1.4E-09 4.9E-14 79.2 4.2 51 15-70 4-58 (72)
39 2dim_A Cell division cycle 5-l 98.9 2.7E-10 9.1E-15 81.7 0.2 27 1-27 43-69 (70)
40 1ign_A Protein (RAP1); RAP1,ye 98.8 2.3E-09 8E-14 94.1 5.0 66 1-70 47-199 (246)
41 2iw5_B Protein corest, REST co 98.8 3.1E-09 1.1E-13 92.6 3.8 48 19-67 133-180 (235)
42 2juh_A Telomere binding protei 98.4 6.1E-08 2.1E-12 77.2 2.5 43 1-43 55-103 (121)
43 1fex_A TRF2-interacting telome 98.4 1.8E-07 6.2E-12 65.5 4.1 46 19-68 2-57 (59)
44 1wgx_A KIAA1903 protein; MYB D 98.4 2.9E-07 9.9E-12 67.3 4.8 41 19-60 8-52 (73)
45 2roh_A RTBP1, telomere binding 98.3 3.8E-07 1.3E-11 72.6 3.7 40 1-40 69-114 (122)
46 2yqk_A Arginine-glutamic acid 98.2 8.9E-07 3E-11 62.5 3.9 52 14-66 4-56 (63)
47 2lr8_A CAsp8-associated protei 97.5 2.2E-07 7.4E-12 67.1 0.0 47 21-69 16-65 (70)
48 1ug2_A 2610100B20RIK gene prod 98.1 3E-06 1E-10 64.3 4.7 45 21-69 35-82 (95)
49 4eef_G F-HB80.4, designed hema 98.0 2E-06 6.9E-11 62.9 2.2 43 19-62 20-66 (74)
50 4iej_A DNA methyltransferase 1 97.9 2E-05 6.9E-10 60.0 5.5 61 7-75 22-87 (93)
51 4a69_C Nuclear receptor corepr 97.9 1.1E-05 3.8E-10 61.2 4.1 49 19-68 43-91 (94)
52 2xag_B REST corepressor 1; ami 97.8 1.3E-05 4.4E-10 76.6 3.8 49 19-68 380-428 (482)
53 2crg_A Metastasis associated p 97.6 3.8E-05 1.3E-09 55.2 3.9 49 19-68 8-57 (70)
54 1ity_A TRF1; helix-turn-helix, 97.3 6.1E-05 2.1E-09 53.4 0.9 23 1-23 46-68 (69)
55 1irz_A ARR10-B; helix-turn-hel 96.2 0.0042 1.4E-07 44.1 3.7 53 17-70 5-62 (64)
56 2ebi_A DNA binding protein GT- 96.2 0.0024 8.1E-08 46.8 2.4 49 19-71 4-66 (86)
57 2din_A Cell division cycle 5-l 96.0 0.00045 1.6E-08 48.3 -2.0 21 1-21 41-61 (66)
58 2ckx_A NGTRF1, telomere bindin 96.0 0.0042 1.4E-07 45.9 3.1 36 1-36 38-79 (83)
59 2yum_A ZZZ3 protein, zinc fing 95.4 0.0032 1.1E-07 44.9 0.6 22 1-22 47-68 (75)
60 2aje_A Telomere repeat-binding 94.7 0.013 4.5E-07 45.2 2.1 39 1-39 51-95 (105)
61 2xag_B REST corepressor 1; ami 93.2 0.016 5.4E-07 55.4 0.0 48 20-68 190-237 (482)
62 1ofc_X ISWI protein; nuclear p 92.4 0.076 2.6E-06 47.9 3.3 48 18-69 211-274 (304)
63 4b4c_A Chromodomain-helicase-D 92.2 0.13 4.3E-06 42.8 4.2 26 21-46 136-162 (211)
64 1ofc_X ISWI protein; nuclear p 90.4 0.27 9.3E-06 44.3 4.7 40 20-60 111-151 (304)
65 2xb0_X Chromo domain-containin 89.8 0.2 6.9E-06 44.4 3.3 26 21-46 170-196 (270)
66 2cu7_A KIAA1915 protein; nucle 88.9 0.06 2E-06 38.0 -0.6 19 1-19 42-60 (72)
67 4b4c_A Chromodomain-helicase-D 86.0 0.69 2.4E-05 38.3 4.2 43 17-60 5-52 (211)
68 2y9y_A Imitation switch protei 85.9 0.44 1.5E-05 44.1 3.2 49 18-70 227-291 (374)
69 2ltp_A Nuclear receptor corepr 76.3 0.64 2.2E-05 34.1 0.0 15 1-15 49-63 (89)
70 2yus_A SWI/SNF-related matrix- 70.0 1.3 4.4E-05 32.0 0.8 12 1-12 51-62 (79)
71 3hug_A RNA polymerase sigma fa 60.4 4.9 0.00017 28.5 2.4 48 25-74 40-87 (92)
72 2o8x_A Probable RNA polymerase 56.9 4.2 0.00014 26.7 1.4 34 25-60 18-51 (70)
73 2xb0_X Chromo domain-containin 52.9 16 0.00055 32.1 4.8 41 19-60 3-48 (270)
74 1or7_A Sigma-24, RNA polymeras 49.0 10 0.00034 29.5 2.6 43 28-72 146-188 (194)
75 1ku3_A Sigma factor SIGA; heli 45.8 12 0.0004 25.2 2.3 35 24-60 12-50 (73)
76 2q1z_A RPOE, ECF SIGE; ECF sig 45.7 8.5 0.00029 29.7 1.7 33 27-61 140-172 (184)
77 2p7v_B Sigma-70, RNA polymeras 41.0 13 0.00044 24.6 1.9 34 25-60 8-45 (68)
78 2lfw_A PHYR sigma-like domain; 40.2 7.6 0.00026 29.9 0.6 36 24-61 95-130 (157)
79 3mzy_A RNA polymerase sigma-H 37.6 15 0.00051 27.3 1.9 38 35-74 121-158 (164)
80 2yqf_A Ankyrin-1; death domain 37.4 54 0.0018 24.3 5.0 37 19-56 10-46 (111)
81 2li6_A SWI/SNF chromatin-remod 33.6 20 0.00068 27.1 2.0 35 29-64 53-95 (116)
82 1rp3_A RNA polymerase sigma fa 33.3 26 0.00088 27.8 2.8 33 27-61 192-224 (239)
83 1xsv_A Hypothetical UPF0122 pr 30.1 33 0.0011 25.5 2.7 44 25-70 28-71 (113)
84 2cxy_A BAF250B subunit, HBAF25 28.9 58 0.002 24.8 4.0 38 29-70 55-104 (125)
85 2of5_A Death domain-containing 28.8 40 0.0014 25.6 3.0 41 12-56 12-52 (114)
86 2o71_A Death domain-containing 27.6 43 0.0015 25.4 3.0 41 12-56 12-52 (115)
87 2of5_H Leucine-rich repeat and 26.8 44 0.0015 25.2 2.9 29 27-56 13-41 (118)
88 2jrz_A Histone demethylase jar 26.8 46 0.0016 25.1 3.0 36 29-64 44-90 (117)
89 1tc3_C Protein (TC3 transposas 26.4 90 0.0031 17.9 3.9 37 21-60 5-41 (51)
90 2lm1_A Lysine-specific demethy 26.2 49 0.0017 24.3 3.1 33 29-62 48-92 (107)
91 2y9y_A Imitation switch protei 26.2 72 0.0025 29.3 4.8 38 21-59 125-164 (374)
92 1tty_A Sigma-A, RNA polymerase 24.9 41 0.0014 23.4 2.3 34 25-60 21-58 (87)
93 3e7l_A Transcriptional regulat 24.6 76 0.0026 20.8 3.5 24 25-48 19-42 (63)
94 1x3u_A Transcriptional regulat 24.1 57 0.002 21.6 2.9 35 22-60 17-51 (79)
95 2jxj_A Histone demethylase jar 24.0 43 0.0015 24.1 2.3 34 29-63 40-85 (96)
96 1wxp_A THO complex subunit 1; 23.3 72 0.0025 23.6 3.5 29 27-56 18-46 (110)
97 2eqy_A RBP2 like, jumonji, at 22.4 61 0.0021 24.6 3.0 35 29-64 46-92 (122)
98 2rq5_A Protein jumonji; develo 22.4 55 0.0019 25.2 2.8 36 29-64 46-93 (121)
99 1kkx_A Transcription regulator 22.1 31 0.0011 26.6 1.2 38 29-70 52-97 (123)
100 3c57_A Two component transcrip 21.7 54 0.0018 23.2 2.4 36 21-60 27-62 (95)
No 1
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.90 E-value=2e-24 Score=167.47 Aligned_cols=71 Identities=25% Similarity=0.497 Sum_probs=66.9
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhhc
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDH 75 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~ 75 (228)
|++||++||.++|+|++++++||+|||++|+++|.+||++|+.||.+|||||+++| ||| |+.++++..+..
T Consensus 35 t~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~-k~r---w~~l~r~~~~~~ 105 (107)
T 2k9n_A 35 NPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNI-RNR---WMMIARHRAKHQ 105 (107)
T ss_dssp CHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHH-HHH---HHHHHHHHHSST
T ss_pred CHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHH-HHH---HHHHHhhHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999 999 999888765543
No 2
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.89 E-value=4.8e-24 Score=164.07 Aligned_cols=68 Identities=41% Similarity=0.711 Sum_probs=63.6
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHh
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
|++||++||.++|+|.+++++||+|||++|++++.+||++|+.||.+|||||+++| ||| |+.++++++
T Consensus 38 t~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~-k~r---w~~~~~~~~ 105 (105)
T 1gv2_A 38 IGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAI-KNH---WNSTMRRKV 105 (105)
T ss_dssp CHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHH-HHH---HHHHTC---
T ss_pred CHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHH-HHH---HHHHHhccC
Confidence 57999999999999999999999999999999999999999999999999999999 999 999998764
No 3
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.89 E-value=8.2e-24 Score=169.31 Aligned_cols=74 Identities=36% Similarity=0.614 Sum_probs=69.8
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQS 78 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~ 78 (228)
+++||++||.++|+|.+++++||+|||++|+++|.+||++|+.||.+|||||+++| ||| |+.++++++......
T Consensus 36 t~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~-k~r---w~~~l~~~~~~~~~~ 109 (131)
T 3zqc_A 36 SPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAI-KNR---WNSSISKRISTNSNH 109 (131)
T ss_dssp CHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHH-HHH---HHHTTGGGCCCCTTS
T ss_pred CHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHH-HHH---HHHHHHHHhhcCCCc
Confidence 68999999999999999999999999999999999999999999999999999999 999 999999987765544
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.87 E-value=5.6e-23 Score=163.62 Aligned_cols=67 Identities=37% Similarity=0.674 Sum_probs=63.9
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHH
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk 71 (228)
+++|||+||.++|+|.+++++||+|||++|++++.+||++|+.||..|||||+++| |+| |+.++++.
T Consensus 44 t~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~-k~r---w~~l~~k~ 110 (126)
T 3osg_A 44 NARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHI-KNR---WVTISNKL 110 (126)
T ss_dssp CHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHH-HHH---HHHHHHHT
T ss_pred CHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHH-HHH---HHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999 999 88877653
No 5
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.87 E-value=5.3e-23 Score=163.69 Aligned_cols=68 Identities=41% Similarity=0.714 Sum_probs=64.3
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHh
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
|++||++||.++|+|.+++++||+|||++|++++.+||++|+.||.+|||||+++| ||| |+.++++++
T Consensus 61 t~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~-k~r---~~~~~~~~~ 128 (128)
T 1h8a_C 61 IGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAV-KNH---WNSTMRRKV 128 (128)
T ss_dssp CHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHH-HHH---HHTTTTC--
T ss_pred cHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHH-HHH---HHHHHhccC
Confidence 57999999999999999999999999999999999999999999999999999999 999 999988763
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.84 E-value=9.5e-22 Score=161.50 Aligned_cols=68 Identities=41% Similarity=0.711 Sum_probs=64.4
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHh
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
|++||+.||.++|+|.+++++||+|||++|++++.+||++|+.||++|||||+++| ||| |+.++++++
T Consensus 92 t~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~-knr---~~~~~r~~~ 159 (159)
T 1h89_C 92 IGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAI-KNH---WNSTMRRKV 159 (159)
T ss_dssp CHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHH-HHH---HHTTTCC--
T ss_pred CHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH-HHH---HHHHHhccC
Confidence 57999999999999999999999999999999999999999999999999999999 999 999988764
No 7
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=9.7e-22 Score=156.36 Aligned_cols=75 Identities=25% Similarity=0.498 Sum_probs=56.4
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcC-chHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLAN-RWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSP 79 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~~ 79 (228)
|++||++||.++|+|++++++||+|||++|+++|.+||. +|..||..|||||+.|| ++| |..+|.+.+...++++
T Consensus 9 t~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc-r~R---w~~~l~p~~~~~~WT~ 84 (128)
T 1h8a_C 9 TDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQC-RER---WHNHLNPEVKKTSWTE 84 (128)
T ss_dssp -------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHH-HHH---HHHTTCSSSCCSCCCH
T ss_pred CHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHH-HHH---HHHhcccccccccCCH
Confidence 689999999999999999999999999999999999995 69999999999999999 999 9998887766555553
No 8
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.82 E-value=6.4e-21 Score=156.56 Aligned_cols=75 Identities=27% Similarity=0.547 Sum_probs=66.2
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcC-chHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLAN-RWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSP 79 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~~ 79 (228)
|++||++||.++|+|++++++||+|||++|+++|.+||. +|+.||..|||||+.|| |+| |..+|.+.+...++++
T Consensus 40 t~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc-r~R---w~~~l~p~~~~~~WT~ 115 (159)
T 1h89_C 40 TDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQC-RER---WHNHLNPEVKKTSWTE 115 (159)
T ss_dssp ---CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHH-HHH---HHHTTCTTSCCSCCCH
T ss_pred CHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHH-HHH---HHHHhCccccccCCCh
Confidence 689999999999999999999999999999999999995 69999999999999999 999 9999887766555543
No 9
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.81 E-value=8.8e-21 Score=139.25 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=46.8
Q ss_pred HHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhh
Q 040653 6 RLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLE 68 (228)
Q Consensus 6 r~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l 68 (228)
.-||.++|+|++++++||+|||++|++++.+||++|+.||+.| |||+++| ||| |+.+.
T Consensus 10 ~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~-knR---w~~L~ 67 (73)
T 2llk_A 10 GRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSV-KDR---CRLMK 67 (73)
T ss_dssp ---------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHH-HHH---HHHCS
T ss_pred CcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHH-HHH---HHHHH
Confidence 3589999999999999999999999999999999999999999 9999999 999 87543
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2e-19 Score=128.30 Aligned_cols=62 Identities=24% Similarity=0.319 Sum_probs=58.3
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCC
Q 040653 11 NYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQ 77 (228)
Q Consensus 11 n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~ 77 (228)
.+|+|.+++++||+|||++|+++|.+||++|+.||. |||||++|| |+| |+.+|++.++....
T Consensus 1 g~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qc-r~R---w~~~l~~~~~~~~~ 62 (66)
T 2din_A 1 GSSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQC-LEH---YEFLLDKAAQRDSG 62 (66)
T ss_dssp CCCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHH-HHH---HHHHHHHHHHSSSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHH-HHH---HHHHhChHhcCCCC
Confidence 379999999999999999999999999999999999 999999999 999 99999998876654
No 11
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.75 E-value=1.1e-18 Score=126.75 Aligned_cols=58 Identities=22% Similarity=0.168 Sum_probs=55.5
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhh
Q 040653 13 LRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQD 74 (228)
Q Consensus 13 L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~ 74 (228)
++|.+++++||+|||++|++++.+||++|+.||.+|||||++|| |+| |+.+++++++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~-k~r---~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQV-KSY---ARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHH-HHH---HHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHH-HHH---HHHHHHHHHhc
Confidence 68999999999999999999999999999999999999999999 999 99999888765
No 12
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4.4e-18 Score=119.08 Aligned_cols=55 Identities=22% Similarity=0.372 Sum_probs=51.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc-CchHHhhccCCCCChhhhhhhhccccchhhhHHh
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLA-NRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G-~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
+|.+++++||+|||++|+++|.+|| ++|+.||.+|||||+.|| |+| |+.+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qc-r~R---w~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQC-QYR---WLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHH-HHH---HHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHH-HHH---HHHHcCCcc
Confidence 5899999999999999999999999 699999999999999999 999 999888754
No 13
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-17 Score=120.50 Aligned_cols=64 Identities=23% Similarity=0.258 Sum_probs=59.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc-CchHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCCCCC
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLA-NRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSPSS 81 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G-~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~~~~ 81 (228)
.|.+++++||+|||++|+++|.+|| ++|..||..|||||+.|| |+| |+.+|++.+++.+++++.
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qc-r~R---w~~~L~p~i~~~~wt~eE 68 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQC-KAR---WYEWLDPSIKKTEWSGPS 68 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHH-HHH---HHHTSCSSSCCCCSCCSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHH-HHH---HHHHcCCcccCCCCChHh
Confidence 5889999999999999999999999 899999999999999999 999 999999998887777553
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.67 E-value=2.6e-17 Score=111.98 Aligned_cols=50 Identities=28% Similarity=0.466 Sum_probs=46.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-chHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 17 IKRGNISHDEDELIIRLLNLLAN-RWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 17 ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
|++++||+|||++|+++|.+||. +|+.||..|||||+.|| |+| |+.+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qc-r~R---w~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQC-QHR---WQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHH-HHH---HHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHH-HHH---HHHHcCc
Confidence 57999999999999999999997 99999999999999999 999 9888865
No 15
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.66 E-value=4.7e-17 Score=110.77 Aligned_cols=50 Identities=30% Similarity=0.527 Sum_probs=47.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcC-chHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 17 IKRGNISHDEDELIIRLLNLLAN-RWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 17 ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
|++++||+|||++|+++|.+||. +|+.||..|||||+.|| |+| |..+|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qc-r~R---w~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQC-RER---WHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHH-HHH---HHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHH-HHH---HHHHcCc
Confidence 68999999999999999999996 69999999999999999 999 9888864
No 16
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.66 E-value=5.8e-17 Score=116.56 Aligned_cols=61 Identities=23% Similarity=0.153 Sum_probs=55.7
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhc-CchHHhhccCC--CCChhhhhhhhccccchhhhHHhhhc
Q 040653 11 NYLRPDIKRGNISHDEDELIIRLLNLLA-NRWSLIAGRLP--GRTDNENMKSRIIGAPTLENKKLQDH 75 (228)
Q Consensus 11 n~L~P~ikk~~WT~EED~lLl~lv~~~G-~kWs~IA~~Lp--GRTd~q~~KnR~~kw~~~l~kk~~~~ 75 (228)
+...|..++++||+|||++|+++|.+|| ++|+.||..|| |||+.|| |+| |..+|++.+...
T Consensus 2 ~~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qc-r~R---w~~~l~p~i~k~ 65 (69)
T 1ity_A 2 PEKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML-KDR---WRTMKKLKLISS 65 (69)
T ss_dssp -CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHH-HHH---HHHHHHTSCCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHH-HHH---HHHHcCCCCCCC
Confidence 3567889999999999999999999999 79999999999 9999999 999 999999887654
No 17
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1e-16 Score=112.57 Aligned_cols=53 Identities=9% Similarity=0.102 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc-CchHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLA-NRWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G-~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
.|.+.+++||+|||++|+++|.+|| ++|..||.+|||||+.|| |+| |..+|.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qc-r~r---~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEEC-EKH---YMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHH-HHH---HHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHH-HHH---HHHHccC
Confidence 5789999999999999999999999 899999999999999999 999 8777653
No 18
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.63 E-value=1.7e-16 Score=108.64 Aligned_cols=49 Identities=24% Similarity=0.211 Sum_probs=46.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhc-CchHHhhccCC--CCChhhhhhhhccccchhhhH
Q 040653 18 KRGNISHDEDELIIRLLNLLA-NRWSLIAGRLP--GRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 18 kk~~WT~EED~lLl~lv~~~G-~kWs~IA~~Lp--GRTd~q~~KnR~~kw~~~l~k 70 (228)
++++||+|||++|+++|.+|| ++|+.||..|| |||+.|| |+| |..+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qc-r~R---w~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVML-KDR---WRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHH-HHH---HHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHH-HHH---HHHHHcc
Confidence 589999999999999999999 79999999999 9999999 999 9888764
No 19
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.1e-16 Score=114.20 Aligned_cols=57 Identities=21% Similarity=0.194 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc------CchHHhhccCCCCChhhhhhhhccccchhhhHHhhh
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLA------NRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQD 74 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G------~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~ 74 (228)
+|++++++||+|||++|++++.+|| ++|..||.+|||||+.|| |+| |+.+|.+.++.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qc-r~r---~~~~l~~~~k~ 65 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQV-ASQ---VQKYFIKLTKA 65 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHH-HHH---HHHHHGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHH-HHH---HHHHHHHHHhc
Confidence 6899999999999999999999999 789999999999999999 999 98888876544
No 20
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.41 E-value=4.3e-17 Score=123.20 Aligned_cols=57 Identities=16% Similarity=0.097 Sum_probs=53.4
Q ss_pred hccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHH
Q 040653 11 NYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 11 n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk 71 (228)
..++|.+++++||+|||++|+++|.+||++|+.||.+|||||++|| |+| |+.++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~-k~r---~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQC-KNF---YFNYKKRQ 64 (89)
Confidence 3578999999999999999999999999999999999999999999 999 88888764
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.57 E-value=1.5e-15 Score=106.04 Aligned_cols=51 Identities=24% Similarity=0.240 Sum_probs=46.8
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhc-CchHHhhccCC-CCChhhhhhhhccccchh
Q 040653 13 LRPDIKRGNISHDEDELIIRLLNLLA-NRWSLIAGRLP-GRTDNENMKSRIIGAPTL 67 (228)
Q Consensus 13 L~P~ikk~~WT~EED~lLl~lv~~~G-~kWs~IA~~Lp-GRTd~q~~KnR~~kw~~~ 67 (228)
+++.+.+++||+|||++|+++|.+|| ++|..||.+|| |||+.|| |+| |..+
T Consensus 3 ~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qc-r~r---~~~~ 55 (58)
T 2elk_A 3 SGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEEC-RDH---YLKT 55 (58)
T ss_dssp SCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHH-HHH---HHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHH-HHH---HHHH
Confidence 45678899999999999999999999 89999999999 9999999 999 7554
No 22
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.57 E-value=1.3e-15 Score=108.72 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc-CchHHhhccCC--CCChhhhhhhhccccchhhhHHh
Q 040653 17 IKRGNISHDEDELIIRLLNLLA-NRWSLIAGRLP--GRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 17 ikk~~WT~EED~lLl~lv~~~G-~kWs~IA~~Lp--GRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
.+|++||+|||++|+++|.+|| ++|+.||..+| |||+.|| |+| |..++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qc-r~R---w~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMI-KDR---WRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHH-HHH---HHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHH-HHH---HHHHhccCC
Confidence 5789999999999999999999 68999999866 9999999 999 999887654
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.47 E-value=2.5e-14 Score=109.56 Aligned_cols=59 Identities=25% Similarity=0.483 Sum_probs=52.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcC-chHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCC
Q 040653 16 DIKRGNISHDEDELIIRLLNLLAN-RWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQS 78 (228)
Q Consensus 16 ~ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~ 78 (228)
+|++++||+|||++|+++|.+||. +|..||..|||||+.|| +.| |..+|.+.+...+++
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc-r~R---w~~~l~p~~~~~~Wt 60 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQC-RER---WHNHLNPEVKKTSWT 60 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHH-HHH---HHHTTCCCCCCCCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHH-HHH---HHhccCCcccccCCC
Confidence 478999999999999999999996 79999999999999999 999 988887766555554
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.46 E-value=3.6e-14 Score=112.65 Aligned_cols=65 Identities=17% Similarity=0.319 Sum_probs=57.7
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCCCCC
Q 040653 13 LRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSPSS 81 (228)
Q Consensus 13 L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~~~~ 81 (228)
..+.+++++||+|||++|+++|.+||.+|..||..|||||+.|| +.| |..+|.+.+...+++++.
T Consensus 5 ~~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qc-r~R---w~~~l~p~~~~~~WT~eE 69 (126)
T 3osg_A 5 NLKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQC-RDR---WKNYLAPSISHTPWTAEE 69 (126)
T ss_dssp C-CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHH-HHH---HHHHTSTTSCCSCCCHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHH-HHH---HhhhcccccccccCCHHH
Confidence 45678999999999999999999999999999999999999999 999 999998887776666443
No 25
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.46 E-value=4e-14 Score=103.68 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=47.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhc----CchHHhhccCCCCChhhhhhhhccccchhhh
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLA----NRWSLIAGRLPGRTDNENMKSRIIGAPTLEN 69 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G----~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~ 69 (228)
.+.+.+++||+|||.+|++++.+|| ++|.+||.+|||||+.|| |+| |+.++.
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qc-r~R---y~~L~~ 68 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDC-IAR---YKLLVS 68 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHH-HHH---HHHHHS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHH-HHH---HHHHHH
Confidence 4678899999999999999999999 789999999999999999 999 776653
No 26
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.41 E-value=1.1e-13 Score=102.50 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchh
Q 040653 16 DIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTL 67 (228)
Q Consensus 16 ~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~ 67 (228)
...+++||+|||++|++++.+||++|..||.+|+|||+.|| |+| |..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qc-r~r---~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDEC-ILH---FLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHH-HHH---HTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHH-HHH---HHHh
Confidence 45688999999999999999999999999999999999999 999 6654
No 27
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.41 E-value=9.2e-14 Score=121.96 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCc------hHHhhccCCCCChhhhhhhhccccchhhhHHhh
Q 040653 15 PDIKRGNISHDEDELIIRLLNLLANR------WSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQ 73 (228)
Q Consensus 15 P~ikk~~WT~EED~lLl~lv~~~G~k------Ws~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~ 73 (228)
+.+++++||+|||++|+++|+++|++ |+.||+.|||||++|| |+| |+.+|++++.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsI-RnR---w~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSI-RHR---FRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHH-HHH---HHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHH-HHH---HHHHHhhhcc
Confidence 57889999999999999999999975 9999999999999999 999 9999999876
No 28
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.39 E-value=2.3e-13 Score=96.83 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCchHHhh---ccCCCCChhhhhhhhccccchhhhH
Q 040653 17 IKRGNISHDEDELIIRLLNLLANRWSLIA---GRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 17 ikk~~WT~EED~lLl~lv~~~G~kWs~IA---~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
-++.+||+|||+.|+++|++||.+|+.|+ .+++|||+.++ |+| |+.++++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdL-Kdk---~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDL-AHK---YHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHH-HHH---HHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchH-HHH---HHHHHhc
Confidence 36789999999999999999999999999 68899999999 999 8887764
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.37 E-value=2.5e-13 Score=104.83 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=51.3
Q ss_pred CCCCCHHHHHHHHHHHHHhcC-chHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCCC
Q 040653 19 RGNISHDEDELIIRLLNLLAN-RWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSP 79 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~-kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~~ 79 (228)
|++||+|||++|+++|.+||. +|..||..|||||+.|| +.| |..+|.+.+...++++
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qc-r~R---w~~~L~p~i~~~~WT~ 58 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQC-RER---WNNYINPALRTDPWSP 58 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHH-HHH---HHHHSSSCCTTCCCCH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHH-HHH---HHHHHcccccccccCH
Confidence 689999999999999999995 89999999999999999 999 9999988776665553
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.35 E-value=3.9e-13 Score=107.16 Aligned_cols=59 Identities=22% Similarity=0.389 Sum_probs=53.2
Q ss_pred CCCCCHHHHHHHHHHHHHhc-CchHHhhccCCCCChhhhhhhhccccchhhhHHhhhcCCCCCC
Q 040653 19 RGNISHDEDELIIRLLNLLA-NRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQDHHQSPSS 81 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G-~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~~~~~~~~ 81 (228)
||+||+|||++|+++|.+|| ++|..||..|||||+.|| +.| |..+|.+.+....++++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qc-r~R---w~~~l~p~~~~~~Wt~eE 61 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQC-RER---WFNHLDPAVVKHAWTPEE 61 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHH-HHH---HHHHTSTTCCCSCCCHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHH-HHH---HhhccCccccCCCCCHHH
Confidence 79999999999999999999 789999999999999999 999 999998877776666443
No 31
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.34 E-value=6.9e-13 Score=105.78 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=50.6
Q ss_pred cCCCCCCCCCCHHHHHHHHHHHHHhcC-chHHhhcc----CCCCChhhhhhhhccccchhhhHH
Q 040653 13 LRPDIKRGNISHDEDELIIRLLNLLAN-RWSLIAGR----LPGRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 13 L~P~ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~----LpGRTd~q~~KnR~~kw~~~l~kk 71 (228)
+.+..++++||+|||+.|+++|.+||. +|+.|+.. |+|||+++| |+| |+.+++..
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~l-KdR---Wrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDL-KDK---WKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHH-HHH---HHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHH-HHH---HHHHHhhh
Confidence 567889999999999999999999996 99999998 599999999 999 99999753
No 32
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.33 E-value=7.5e-13 Score=99.12 Aligned_cols=49 Identities=24% Similarity=0.245 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhcC-chHHhhcc----CCCCChhhhhhhhccccchhhhHHh
Q 040653 20 GNISHDEDELIIRLLNLLAN-RWSLIAGR----LPGRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 20 ~~WT~EED~lLl~lv~~~G~-kWs~IA~~----LpGRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
.+||+|||+.|+++|.+||. +|+.|+.. |+|||+++| |+| |+++++...
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~l-Kdr---Wrnllk~~~ 54 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDL-KDK---WKTLVHTAS 54 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHH-HHH---HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHH-HHH---HHHHHHhcc
Confidence 48999999999999999996 99999995 899999999 999 999987553
No 33
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.31 E-value=1.5e-12 Score=101.44 Aligned_cols=54 Identities=22% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcC-chHHhhccC----CCCChhhhhhhhccccchhhhHH
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLAN-RWSLIAGRL----PGRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~L----pGRTd~q~~KnR~~kw~~~l~kk 71 (228)
.+..++++||+|||+.|+++|.+||. +|+.|+..+ +|||+++| |+| |..+++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~l-Kdr---Wrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDL-KDK---WKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHH-HHH---HHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHH-HHH---HHHHHhhc
Confidence 45788999999999999999999996 999999965 89999999 999 99988644
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.24 E-value=5e-12 Score=96.48 Aligned_cols=50 Identities=26% Similarity=0.347 Sum_probs=45.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CchHHhhccCCCCChhhhhhhhccccchhhhHH
Q 040653 18 KRGNISHDEDELIIRLLNLLA----NRWSLIAGRLPGRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 18 kk~~WT~EED~lLl~lv~~~G----~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk 71 (228)
.+++||+|||++|++++.+|| ++|.+||..|||||+++| |+| |+.++...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~-k~r---y~~l~~dv 60 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEV-KKH---YEILVEDI 60 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHH-HHH---HHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHH-HHH---HHHHHHHH
Confidence 367999999999999999996 789999999999999999 999 88877654
No 35
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.21 E-value=8.4e-12 Score=99.63 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=47.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcC-chHHhhcc----CCCCChhhhhhhhccccchhhhHH
Q 040653 15 PDIKRGNISHDEDELIIRLLNLLAN-RWSLIAGR----LPGRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 15 P~ikk~~WT~EED~lLl~lv~~~G~-kWs~IA~~----LpGRTd~q~~KnR~~kw~~~l~kk 71 (228)
...++++||+|||+.|+++|++||. +|+.|+.. |+|||+++| |+| |.++++..
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdl-KdR---Wrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDL-KDK---WKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHH-HHH---HHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHH-HHH---HHHHHhhc
Confidence 4567889999999999999999995 99999986 499999999 999 99998654
No 36
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.15 E-value=3.6e-11 Score=91.83 Aligned_cols=63 Identities=17% Similarity=0.195 Sum_probs=57.2
Q ss_pred hHHHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccC-----CCCChhhhhhhhccccchhhhHHhhhc
Q 040653 5 CRLRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRL-----PGRTDNENMKSRIIGAPTLENKKLQDH 75 (228)
Q Consensus 5 Cr~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~L-----pGRTd~q~~KnR~~kw~~~l~kk~~~~ 75 (228)
+.+||.++|.| .+||.||+..|++|+++||.+|..|+.++ ++||..++ |+| |....++.+...
T Consensus 20 t~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdL-K~R---yY~v~~~l~~~r 87 (93)
T 3hm5_A 20 SEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDL-KER---YYHICAKLANVR 87 (93)
T ss_dssp CHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHH-HHH---HHHHHHHHHHHT
T ss_pred CHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHH-HHH---HHHHHHHHHHhc
Confidence 68999999987 89999999999999999999999999999 58999999 999 888777766554
No 37
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.1e-11 Score=83.39 Aligned_cols=46 Identities=13% Similarity=0.030 Sum_probs=41.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhcccc
Q 040653 18 KRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGA 64 (228)
Q Consensus 18 kk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw 64 (228)
...+||+||++++++++.+||.+|..||.+|||||..+| +.+|..|
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~-v~~Yy~~ 56 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDC-VLYYYLT 56 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHH-HHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHH-HHHHHHh
Confidence 457899999999999999999999999999999999999 9985434
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.86 E-value=1.4e-09 Score=79.17 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=44.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhc----CchHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 15 PDIKRGNISHDEDELIIRLLNLLA----NRWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 15 P~ikk~~WT~EED~lLl~lv~~~G----~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
...+.++||.|||.+|.+++.+|+ ++|.+||..| |||..+| ++| |+.+...
T Consensus 4 ~~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV-~~~---y~~L~~d 58 (72)
T 2cqq_A 4 GSSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDV-TTK---AKQLKDS 58 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHH-HHH---HHHHHHS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHH-HHH---HHHHHHh
Confidence 356778999999999999999997 6899999998 9999999 999 7666544
No 39
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.86 E-value=2.7e-10 Score=81.67 Aligned_cols=27 Identities=33% Similarity=0.758 Sum_probs=26.0
Q ss_pred CchhhHHHhhhccCCCCCCCCCCHHHH
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNISHDED 27 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT~EED 27 (228)
|++|||+||.++|+|.|++++||+|||
T Consensus 43 t~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 43 SAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp CHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 689999999999999999999999998
No 40
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.83 E-value=2.3e-09 Score=94.11 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=57.1
Q ss_pred CchhhHHHhhhccCCCCC-----------------------------CCCCCHHHHHHHHHHHHH-h-------------
Q 040653 1 CGKSCRLRWLNYLRPDIK-----------------------------RGNISHDEDELIIRLLNL-L------------- 37 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ik-----------------------------k~~WT~EED~lLl~lv~~-~------------- 37 (228)
|+.|||.||.++|++.|+ |.+||.|||-.|.+.+.+ |
T Consensus 47 T~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~ 126 (246)
T 1ign_A 47 TGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGR 126 (246)
T ss_dssp CHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCC
T ss_pred CHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccc
Confidence 678999999999999997 899999999999999987 2
Q ss_pred -------------------cC-------------------------chHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 38 -------------------AN-------------------------RWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 38 -------------------G~-------------------------kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
|. .|.+||..+|+||++++ |+| |...++.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~fk~ia~~~P~HT~~SW-RdR---yrKfl~~ 199 (246)
T 1ign_A 127 SLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREFFKHFAEEHAAHTENAW-RDR---FRKFLLA 199 (246)
T ss_dssp BCC-------------------------------CCCCCCCCCCTTHHHHHHHHTTTSCHHHH-HHH---HHHTHHH
T ss_pred cccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHHHHHHHHHCCCCChhhH-HHH---HHHHHhh
Confidence 21 79999999999999999 999 5554443
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.77 E-value=3.1e-09 Score=92.64 Aligned_cols=48 Identities=8% Similarity=0.133 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchh
Q 040653 19 RGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTL 67 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~ 67 (228)
..+||+||++++++++.+||++|..||..+++||..|| |++|..|...
T Consensus 133 s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~Qc-KnfY~~~kKR 180 (235)
T 2iw5_B 133 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQV-KNFFVNYRRR 180 (235)
T ss_dssp CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHH-HHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHH-HHHHHHHHHH
Confidence 55899999999999999999999999999999999999 9996666544
No 42
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.45 E-value=6.1e-08 Score=77.15 Aligned_cols=43 Identities=12% Similarity=0.251 Sum_probs=41.2
Q ss_pred CchhhHHHhhhccC-----CCCCCC-CCCHHHHHHHHHHHHHhcCchHH
Q 040653 1 CGKSCRLRWLNYLR-----PDIKRG-NISHDEDELIIRLLNLLANRWSL 43 (228)
Q Consensus 1 ~gKQCr~RW~n~L~-----P~ikk~-~WT~EED~lLl~lv~~~G~kWs~ 43 (228)
|+.||++||.|.|+ |.++++ +|++||+++|+++|..+||+|++
T Consensus 55 T~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 55 TYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHHHHHHHHHccchhc
Confidence 67899999999999 999999 99999999999999999999987
No 43
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.42 E-value=1.8e-07 Score=65.50 Aligned_cols=46 Identities=17% Similarity=0.186 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHh--------cCc-hHHhhc-cCCCCChhhhhhhhccccchhh
Q 040653 19 RGNISHDEDELIIRLLNLL--------ANR-WSLIAG-RLPGRTDNENMKSRIIGAPTLE 68 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~--------G~k-Ws~IA~-~LpGRTd~q~~KnR~~kw~~~l 68 (228)
|.+||+|||++|++.|.++ |++ |..+|. .+|++|-.++ |+| |...|
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSw-RdR---y~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSL-KDR---YLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHH-HHH---HHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHH-HHH---HHHHc
Confidence 6799999999999999999 655 999999 7999999999 999 65554
No 44
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.39 E-value=2.9e-07 Score=67.29 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCCCHHHHHHHHHHHHHhc----CchHHhhccCCCCChhhhhhhh
Q 040653 19 RGNISHDEDELIIRLLNLLA----NRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G----~kWs~IA~~LpGRTd~q~~KnR 60 (228)
..+||.+|+.+|.++...|+ .+|..||..+||||..+| +.|
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~-~~h 52 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEEC-QRK 52 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHH-HHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHH-HHH
Confidence 45899999999999999998 479999999999999999 888
No 45
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.29 E-value=3.8e-07 Score=72.65 Aligned_cols=40 Identities=13% Similarity=0.208 Sum_probs=37.8
Q ss_pred CchhhHHHhhhcc-----CCCCCCCCCCHHH-HHHHHHHHHHhcCc
Q 040653 1 CGKSCRLRWLNYL-----RPDIKRGNISHDE-DELIIRLLNLLANR 40 (228)
Q Consensus 1 ~gKQCr~RW~n~L-----~P~ikk~~WT~EE-D~lLl~lv~~~G~k 40 (228)
|+.||++||.|.| +|.++++.|+++| +++|+++|..+|++
T Consensus 69 T~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~~~h~~~g~~ 114 (122)
T 2roh_A 69 TYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVD 114 (122)
T ss_dssp CHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHHHHHHHHhhH
Confidence 5789999999999 8999999999999 89999999999975
No 46
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.22 E-value=8.9e-07 Score=62.47 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=45.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhc-cCCCCChhhhhhhhccccch
Q 040653 14 RPDIKRGNISHDEDELIIRLLNLLANRWSLIAG-RLPGRTDNENMKSRIIGAPT 66 (228)
Q Consensus 14 ~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~-~LpGRTd~q~~KnR~~kw~~ 66 (228)
.|.+...+||+||-++-.+.+.+||..|..|++ .||+||-.+| ...|..|+.
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~-v~fYY~wKk 56 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGEL-ITFYYYWKK 56 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHH-HHHHHHHHC
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHH-HHHHhcccC
Confidence 488899999999999999999999999999999 6999999999 666544543
No 47
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.48 E-value=2.2e-07 Score=67.07 Aligned_cols=47 Identities=15% Similarity=0.206 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhcC---chHHhhccCCCCChhhhhhhhccccchhhh
Q 040653 21 NISHDEDELIIRLLNLLAN---RWSLIAGRLPGRTDNENMKSRIIGAPTLEN 69 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G~---kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~ 69 (228)
-||.|||+.||..+.+-|. .|+.||..| +||.+|| ++||.....++.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV-~~RF~~Lm~Lf~ 65 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQV-SERFQQLMKLFE 65 (70)
Confidence 4999999999999999996 799999999 9999999 999655444443
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.09 E-value=3e-06 Score=64.31 Aligned_cols=45 Identities=20% Similarity=0.259 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHhcC---chHHhhccCCCCChhhhhhhhccccchhhh
Q 040653 21 NISHDEDELIIRLLNLLAN---RWSLIAGRLPGRTDNENMKSRIIGAPTLEN 69 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G~---kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~ 69 (228)
-||.|||+.||....+-|. .|+.||+.|.+|+.+|| ++| ++.+++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV-~~R---Fq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV-SHR---FRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHH-HHH---HHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHH-HHH---HHHHHH
Confidence 4999999999999999996 79999999999999999 999 555554
No 49
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.00 E-value=2e-06 Score=62.88 Aligned_cols=43 Identities=23% Similarity=0.274 Sum_probs=38.0
Q ss_pred CCCCCHHHHHHHHHHHHHhcC----chHHhhccCCCCChhhhhhhhcc
Q 040653 19 RGNISHDEDELIIRLLNLLAN----RWSLIAGRLPGRTDNENMKSRII 62 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~----kWs~IA~~LpGRTd~q~~KnR~~ 62 (228)
.++||.+|++++.++..+|+. +|.+||..+||||..+| +.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEV-k~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEV-KKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHH-HGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHH-HHHHH
Confidence 457999999999999999983 79999999999999999 88853
No 50
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.85 E-value=2e-05 Score=59.98 Aligned_cols=61 Identities=18% Similarity=0.200 Sum_probs=51.4
Q ss_pred HHhhhccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCC-----CCChhhhhhhhccccchhhhHHhhhc
Q 040653 7 LRWLNYLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLP-----GRTDNENMKSRIIGAPTLENKKLQDH 75 (228)
Q Consensus 7 ~RW~n~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~Lp-----GRTd~q~~KnR~~kw~~~l~kk~~~~ 75 (228)
+.|..+|. ...||.||-..|++|++.|+-+|..|+.+.. +||-.++ |.| |....++.+...
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdL-K~R---YY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDL-KER---YYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHH-HHH---HHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHH-HHH---HHHHHHHHHHhh
Confidence 45666665 3689999999999999999999999999874 7999999 999 888777766544
No 51
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.85 E-value=1.1e-05 Score=61.15 Aligned_cols=49 Identities=20% Similarity=0.046 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhh
Q 040653 19 RGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLE 68 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l 68 (228)
...||+||-++..+...+||.+|..||..||+||..+| -..|..|+...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~c-V~~YY~~Kk~~ 91 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAEC-VLYYYLTKKNE 91 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHH-HHHHHHHSCC-
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHH-HHHHhccccCc
Confidence 45799999999999999999999999999999999999 66665565543
No 52
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.76 E-value=1.3e-05 Score=76.56 Aligned_cols=49 Identities=8% Similarity=0.104 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhh
Q 040653 19 RGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLE 68 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l 68 (228)
..+||+||-++.++++.+||..|..||..++.||..|| |++|.+|...+
T Consensus 380 ~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qv-k~fy~~~kkr~ 428 (482)
T 2xag_B 380 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQV-KNFFVNYRRRF 428 (482)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHH-HHHHHHTTTTT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHH-HHHHHHHHHHh
Confidence 56899999999999999999999999999999999999 99987766544
No 53
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.64 E-value=3.8e-05 Score=55.18 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHhhc-cCCCCChhhhhhhhccccchhh
Q 040653 19 RGNISHDEDELIIRLLNLLANRWSLIAG-RLPGRTDNENMKSRIIGAPTLE 68 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~kWs~IA~-~LpGRTd~q~~KnR~~kw~~~l 68 (228)
..+||+||-++-.+.+.+||..|..|+. .||+||-.+| ...|..|+...
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~-v~fYY~wKkt~ 57 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSI-IEYYYMWKTTD 57 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHH-HHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHH-HHHHHhhcCCc
Confidence 4589999999999999999999999999 6999999999 66544455443
No 54
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.27 E-value=6.1e-05 Score=53.36 Aligned_cols=23 Identities=9% Similarity=0.166 Sum_probs=21.0
Q ss_pred CchhhHHHhhhccCCCCCCCCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNIS 23 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~WT 23 (228)
|++||++||.++|+|.|.+++.+
T Consensus 46 t~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 46 TSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp CHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CHHHHHHHHHHHcCCCCCCCCCC
Confidence 68999999999999999998764
No 55
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=96.17 E-value=0.0042 Score=44.10 Aligned_cols=53 Identities=13% Similarity=0.000 Sum_probs=43.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhcCc---hHHhhcc--CCCCChhhhhhhhccccchhhhH
Q 040653 17 IKRGNISHDEDELIIRLLNLLANR---WSLIAGR--LPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 17 ikk~~WT~EED~lLl~lv~~~G~k---Ws~IA~~--LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
-.+-.||+|.-+.-++++.++|.. ++.|... ++|.|-.+| +.|++||...+++
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~V-kSHLQKYR~~l~r 62 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENV-ASHLQKFRVALKK 62 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHH-HHHHHHHHHHHHS
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHH-HHHHHHHHHHHHc
Confidence 456689999999999999999954 7888776 479999999 9997777666543
No 56
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.15 E-value=0.0024 Score=46.75 Aligned_cols=49 Identities=14% Similarity=0.223 Sum_probs=40.5
Q ss_pred CCCCCHHHHHHHHHHHHHhc----------CchHHhhccCC----CCChhhhhhhhccccchhhhHH
Q 040653 19 RGNISHDEDELIIRLLNLLA----------NRWSLIAGRLP----GRTDNENMKSRIIGAPTLENKK 71 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G----------~kWs~IA~~Lp----GRTd~q~~KnR~~kw~~~l~kk 71 (228)
...||.+|-.+||++...+- ..|..||..|. .||+.|| +.+ |..+.+.-
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC-~~K---~~nL~k~Y 66 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMC-TDK---WRNLLKEF 66 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHH-HHH---HHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHH-HHH---HHHHHHHH
Confidence 46799999999999998633 25999999863 7999999 999 88877653
No 57
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.02 E-value=0.00045 Score=48.31 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.5
Q ss_pred CchhhHHHhhhccCCCCCCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKRGN 21 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~ 21 (228)
|++|||.||.++|+|.++++.
T Consensus 41 t~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 41 TAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CHHHHHHHHHHHHHHHHHSSS
T ss_pred CHHHHHHHHHHHhChHhcCCC
Confidence 679999999999999887764
No 58
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=95.98 E-value=0.0042 Score=45.95 Aligned_cols=36 Identities=14% Similarity=0.304 Sum_probs=30.5
Q ss_pred CchhhHHHhhhcc-----CCCCCCC-CCCHHHHHHHHHHHHH
Q 040653 1 CGKSCRLRWLNYL-----RPDIKRG-NISHDEDELIIRLLNL 36 (228)
Q Consensus 1 ~gKQCr~RW~n~L-----~P~ikk~-~WT~EED~lLl~lv~~ 36 (228)
|+.||++||.|+| +|.++++ +..+++.+.++.++..
T Consensus 38 T~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 38 TYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 6789999999998 7988776 6778888889988875
No 59
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.43 E-value=0.0032 Score=44.88 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.1
Q ss_pred CchhhHHHhhhccCCCCCCCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKRGNI 22 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk~~W 22 (228)
|++||+.||++||.+.++++-.
T Consensus 47 t~~qcr~r~~~~l~~~~k~g~~ 68 (75)
T 2yum_A 47 TAKQVASQVQKYFIKLTKAGIP 68 (75)
T ss_dssp CHHHHHHHHHHHHGGGSTTCSC
T ss_pred CHHHHHHHHHHHHHHHHhcCCC
Confidence 5799999999999998887643
No 60
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=94.69 E-value=0.013 Score=45.19 Aligned_cols=39 Identities=13% Similarity=0.207 Sum_probs=33.7
Q ss_pred CchhhHHHhhhcc-----CCCCCCCCCCHHHHHH-HHHHHHHhcC
Q 040653 1 CGKSCRLRWLNYL-----RPDIKRGNISHDEDEL-IIRLLNLLAN 39 (228)
Q Consensus 1 ~gKQCr~RW~n~L-----~P~ikk~~WT~EED~l-Ll~lv~~~G~ 39 (228)
|+.||++||.+.| +|.++++.-+++|=.. +++|+..+|+
T Consensus 51 T~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv~~~~~~~~~ 95 (105)
T 2aje_A 51 TYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQ 95 (105)
T ss_dssp CHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999 7999999988888776 8888888764
No 61
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.23 E-value=0.016 Score=55.40 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhh
Q 040653 20 GNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLE 68 (228)
Q Consensus 20 ~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l 68 (228)
..||++|..+..+.+.+||.+|..|+.+||+||-.+|++. |..|+...
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~y-YY~WKKt~ 237 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKF-YYSWKKTR 237 (482)
T ss_dssp -------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHH-hccccccc
Confidence 4799999999999999999999999999999999999554 44476654
No 62
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=92.40 E-value=0.076 Score=47.92 Aligned_cols=48 Identities=27% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CchHHhh------------ccCCCCChhhhhhhhccccchhhh
Q 040653 18 KRGNISHDEDELIIRLLNLLA----NRWSLIA------------GRLPGRTDNENMKSRIIGAPTLEN 69 (228)
Q Consensus 18 kk~~WT~EED~lLl~lv~~~G----~kWs~IA------------~~LpGRTd~q~~KnR~~kw~~~l~ 69 (228)
+...||++||..||-++.+|| +.|..|. =++-.||..+| ..| ..++++
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el-~rR---c~tLi~ 274 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALEL-QRR---CNTLIT 274 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHH-HHH---HHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHH-HHH---HHHHHH
Confidence 556899999999999999999 4699996 24567999999 999 666664
No 63
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=92.20 E-value=0.13 Score=42.84 Aligned_cols=26 Identities=12% Similarity=0.311 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHhhc
Q 040653 21 NISHDEDELIIRLLNLLA-NRWSLIAG 46 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G-~kWs~IA~ 46 (228)
.||++||..||..+.+|| ++|..|..
T Consensus 136 ~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 136 DWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 599999999999999999 99999955
No 64
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.39 E-value=0.27 Score=44.29 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHHHHHhc-CchHHhhccCCCCChhhhhhhh
Q 040653 20 GNISHDEDELIIRLLNLLA-NRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 20 ~~WT~EED~lLl~lv~~~G-~kWs~IA~~LpGRTd~q~~KnR 60 (228)
+.||..+....+.+..+|| +.|..||..++|+|..+| +.+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV-~~Y 151 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEV-IEY 151 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHH-HHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHH-HHH
Confidence 3699999999999999999 679999999999999999 775
No 65
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=89.82 E-value=0.2 Score=44.39 Aligned_cols=26 Identities=23% Similarity=0.390 Sum_probs=24.3
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHhhc
Q 040653 21 NISHDEDELIIRLLNLLA-NRWSLIAG 46 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G-~kWs~IA~ 46 (228)
.|+.+||..||..|.+|| ++|.+|..
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 499999999999999999 89999964
No 66
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=88.88 E-value=0.06 Score=38.01 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.9
Q ss_pred CchhhHHHhhhccCCCCCC
Q 040653 1 CGKSCRLRWLNYLRPDIKR 19 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P~ikk 19 (228)
|++||+.||.++|++.+++
T Consensus 42 t~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 42 TVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CHHHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHHHHHHHhc
Confidence 5789999999999988776
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=86.02 E-value=0.69 Score=38.27 Aligned_cols=43 Identities=16% Similarity=0.179 Sum_probs=36.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhc---CchHHhhc--cCCCCChhhhhhhh
Q 040653 17 IKRGNISHDEDELIIRLLNLLA---NRWSLIAG--RLPGRTDNENMKSR 60 (228)
Q Consensus 17 ikk~~WT~EED~lLl~lv~~~G---~kWs~IA~--~LpGRTd~q~~KnR 60 (228)
-....||..|=..+++.+.+|| .+|..|+. .|+++|...+ +..
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v-~~y 52 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDL-RRL 52 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHH-HHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHH-HHH
Confidence 3456899999999999999999 68999986 4899999999 875
No 68
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=85.90 E-value=0.44 Score=44.09 Aligned_cols=49 Identities=24% Similarity=0.329 Sum_probs=40.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhc----CchHHhhcc------------CCCCChhhhhhhhccccchhhhH
Q 040653 18 KRGNISHDEDELIIRLLNLLA----NRWSLIAGR------------LPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 18 kk~~WT~EED~lLl~lv~~~G----~kWs~IA~~------------LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
+...||++||..||-++.+|| +.|..|-.. |-.||..++ ..| ..++++-
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL-~rR---c~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVEL-ARR---GNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHH-HHH---HHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHH-HHH---HHHHHHH
Confidence 345799999999999999999 569998332 467999999 999 7777754
No 69
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=76.34 E-value=0.64 Score=34.12 Aligned_cols=15 Identities=20% Similarity=0.487 Sum_probs=12.9
Q ss_pred CchhhHHHhhhccCC
Q 040653 1 CGKSCRLRWLNYLRP 15 (228)
Q Consensus 1 ~gKQCr~RW~n~L~P 15 (228)
|++||+.||.++|+-
T Consensus 49 t~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 49 TVSQCKNFYFNYKKR 63 (89)
Confidence 578999999999863
No 70
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=69.97 E-value=1.3 Score=31.98 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=10.9
Q ss_pred CchhhHHHhhhc
Q 040653 1 CGKSCRLRWLNY 12 (228)
Q Consensus 1 ~gKQCr~RW~n~ 12 (228)
|++||+.||.++
T Consensus 51 T~~qcr~r~~~~ 62 (79)
T 2yus_A 51 TQDECILHFLRL 62 (79)
T ss_dssp CHHHHHHHHTTS
T ss_pred CHHHHHHHHHHh
Confidence 578999999998
No 71
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=60.43 E-value=4.9 Score=28.47 Aligned_cols=48 Identities=25% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhh
Q 040653 25 DEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQD 74 (228)
Q Consensus 25 EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~ 74 (228)
+.+..++.|+...|-.-..||..| |-+...| |.|+.+-...|++.+..
T Consensus 40 ~~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV-~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 40 AEHRAVIQRSYYRGWSTAQIATDL-GIAEGTV-KSRLHYAVRALRLTLQE 87 (92)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHH-HHHHHHHHHHHHHHHHH
Confidence 456667777777888899999999 7888889 98854444444444443
No 72
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=56.90 E-value=4.2 Score=26.71 Aligned_cols=34 Identities=21% Similarity=0.180 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhh
Q 040653 25 DEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 25 EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
+.+..++.++...|-.+..||..| |-+...| +++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv-~~~ 51 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTI-RSR 51 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHH-HHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHH-HHH
Confidence 556677778778899999999999 7788888 877
No 73
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=52.94 E-value=16 Score=32.12 Aligned_cols=41 Identities=12% Similarity=0.162 Sum_probs=35.9
Q ss_pred CCCCCHHHHHHHHHHHHHhc---CchHHhhc--cCCCCChhhhhhhh
Q 040653 19 RGNISHDEDELIIRLLNLLA---NRWSLIAG--RLPGRTDNENMKSR 60 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G---~kWs~IA~--~LpGRTd~q~~KnR 60 (228)
+++||+.|=..|++.+.+|| .+|..|+. .|+.++...+ +.-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i-~~~ 48 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKY-GET 48 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHH-HHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHH-HHH
Confidence 67899999999999999999 68999976 4899998887 665
No 74
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=48.97 E-value=10 Score=29.45 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=28.5
Q ss_pred HHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHh
Q 040653 28 ELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKL 72 (228)
Q Consensus 28 ~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~ 72 (228)
..++.++...|-....||..| |-+...| |+|+.+-...|++.+
T Consensus 146 r~vl~l~~~~g~s~~EIA~~l-gis~~tV-~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 146 RMAITLRELDGLSYEEIAAIM-DCPVGTV-RSRIFRAREAIDNKV 188 (194)
T ss_dssp HHHHHHHHTTCCCHHHHHHHT-TSCHHHH-HHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHcCCCHHHHHHHH-CCCHHHH-HHHHHHHHHHHHHHH
Confidence 344445555677899999999 7888889 888443344444433
No 75
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=45.83 E-value=12 Score=25.21 Aligned_cols=35 Identities=6% Similarity=0.189 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHH----hcCchHHhhccCCCCChhhhhhhh
Q 040653 24 HDEDELIIRLLNL----LANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 24 ~EED~lLl~lv~~----~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
++.+..++.+.-- .|-.+..||..| |-+...| +.+
T Consensus 12 ~~~er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV-~~~ 50 (73)
T 1ku3_A 12 SEREAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERI-RQI 50 (73)
T ss_dssp CHHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHH-HHH
T ss_pred CHHHHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHH-HHH
Confidence 3455666666665 578899999999 7888888 877
No 76
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=45.65 E-value=8.5 Score=29.68 Aligned_cols=33 Identities=21% Similarity=0.083 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhc
Q 040653 27 DELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRI 61 (228)
Q Consensus 27 D~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~ 61 (228)
+..++.++...|-....||..| |-+...| |+|+
T Consensus 140 ~r~vl~l~~~~g~s~~eIA~~l-gis~~tV-~~~l 172 (184)
T 2q1z_A 140 QRALIERAFFGDLTHRELAAET-GLPLGTI-KSRI 172 (184)
T ss_dssp HHHHHHHHHHSCCSSCCSTTTC-CCCCHHH-HHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-CcCHHHH-HHHH
Confidence 3445555556677899999999 7888889 8883
No 77
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=41.01 E-value=13 Score=24.63 Aligned_cols=34 Identities=6% Similarity=0.048 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH----HhcCchHHhhccCCCCChhhhhhhh
Q 040653 25 DEDELIIRLLN----LLANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 25 EED~lLl~lv~----~~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
+.+..++.+.- ..|-.+..||..| |-+...| +.+
T Consensus 8 ~~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV-~~~ 45 (68)
T 2p7v_B 8 AREAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERI-RQI 45 (68)
T ss_dssp HHHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHH-HHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHH-HHH
Confidence 44566666666 3578899999999 7888888 887
No 78
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=40.18 E-value=7.6 Score=29.93 Aligned_cols=36 Identities=8% Similarity=-0.114 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhc
Q 040653 24 HDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRI 61 (228)
Q Consensus 24 ~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~ 61 (228)
++++..++.|+...|-.-..||..| |-+...| |+|+
T Consensus 95 p~~~r~vl~L~~~~g~s~~EIA~~l-gis~~tV-~~~l 130 (157)
T 2lfw_A 95 TPLSRQALLLTAMEGFSPEDAAYLI-EVDTSEV-ETLV 130 (157)
T ss_dssp CTTHHHHHTTTSSSCCCHHHHHHTT-TSCHHHH-HHHH
T ss_pred CHHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHH-HHHH
Confidence 3456677777777788899999999 7899999 9984
No 79
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=37.60 E-value=15 Score=27.28 Aligned_cols=38 Identities=11% Similarity=0.061 Sum_probs=26.4
Q ss_pred HHhcCchHHhhccCCCCChhhhhhhhccccchhhhHHhhh
Q 040653 35 NLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENKKLQD 74 (228)
Q Consensus 35 ~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~kk~~~ 74 (228)
...|-....||..| |-+...| ++|+.+-...|++.+..
T Consensus 121 ~~~g~s~~EIA~~l-gis~~tV-~~~~~ra~~~Lr~~l~~ 158 (164)
T 3mzy_A 121 LIRGYSYREIATIL-SKNLKSI-DNTIQRIRKKSEEWIKE 158 (164)
T ss_dssp HTTTCCHHHHHHHH-TCCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHH-CCCHHHH-HHHHHHHHHHHHHHHHH
Confidence 34567789999998 7888888 88855445555555543
No 80
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=37.38 E-value=54 Score=24.28 Aligned_cols=37 Identities=11% Similarity=0.094 Sum_probs=30.7
Q ss_pred CCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhh
Q 040653 19 RGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNEN 56 (228)
Q Consensus 19 k~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~ 56 (228)
...=+..-+..|..+.+..|..|..+|..| |=+..+|
T Consensus 10 ~~~~~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I 46 (111)
T 2yqf_A 10 SLSGTEQAEMKMAVISEHLGLSWAELAREL-QFSVEDI 46 (111)
T ss_dssp CCSCSHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHH
T ss_pred cCchHhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 334577788899999999999999999999 7777665
No 81
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.55 E-value=20 Score=27.13 Aligned_cols=35 Identities=20% Similarity=0.314 Sum_probs=25.4
Q ss_pred HHHHHHHHhcC--------chHHhhccCCCCChhhhhhhhcccc
Q 040653 29 LIIRLLNLLAN--------RWSLIAGRLPGRTDNENMKSRIIGA 64 (228)
Q Consensus 29 lLl~lv~~~G~--------kWs~IA~~LpGRTd~q~~KnR~~kw 64 (228)
.|..+|...|+ +|..||..|.--.+..+ |..|.++
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~L-r~~Y~k~ 95 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQL-ESIYFRI 95 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHH-HHHHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHH-HHHHHHH
Confidence 57777888883 79999998744346777 9995443
No 82
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=33.25 E-value=26 Score=27.79 Aligned_cols=33 Identities=15% Similarity=0.062 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhc
Q 040653 27 DELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRI 61 (228)
Q Consensus 27 D~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~ 61 (228)
+..++.++-..|-....||..| |-+...| +.++
T Consensus 192 ~r~vl~l~~~~g~s~~EIA~~l-gis~~~V-~~~~ 224 (239)
T 1rp3_A 192 EKLVIQLIFYEELPAKEVAKIL-ETSVSRV-SQLK 224 (239)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHT-TSCHHHH-HHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHh-CCCHHHH-HHHH
Confidence 3444555555677899999999 7888888 8873
No 83
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=30.08 E-value=33 Score=25.46 Aligned_cols=44 Identities=16% Similarity=0.116 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 25 DEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 25 EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
+.+..++.++...|-....||..| |-+...| +.|+.+-...|+.
T Consensus 28 ~~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV-~~~l~ra~~kLr~ 71 (113)
T 1xsv_A 28 NKQRNYLELFYLEDYSLSEIADTF-NVSRQAV-YDNIRRTGDLVED 71 (113)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHT-TCCHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHH-HHHHHHHHHHHHH
Confidence 345667777777888999999999 7888888 8884433333433
No 84
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=28.90 E-value=58 Score=24.81 Aligned_cols=38 Identities=13% Similarity=0.102 Sum_probs=24.9
Q ss_pred HHHHHHHHhc--------CchHHhhccCCCCC----hhhhhhhhccccchhhhH
Q 040653 29 LIIRLLNLLA--------NRWSLIAGRLPGRT----DNENMKSRIIGAPTLENK 70 (228)
Q Consensus 29 lLl~lv~~~G--------~kWs~IA~~LpGRT----d~q~~KnR~~kw~~~l~k 70 (228)
.|..+|..+| ++|..||..|.--+ ...+ |.. |..+|.+
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~L-k~~---Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSL-KKQ---YIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHH-HHH---HHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHH-HHH---HHHHHHH
Confidence 5777777887 37999999874322 3445 888 4444443
No 85
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=28.75 E-value=40 Score=25.57 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=27.9
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhh
Q 040653 12 YLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNEN 56 (228)
Q Consensus 12 ~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~ 56 (228)
.+.+.+-...=|.+ .|-.+++.+|..|..+|..| |=++.+|
T Consensus 12 ~~~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 12 GIPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp ----CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred CCCchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 45556655555655 46666899999999999998 6666665
No 86
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=27.65 E-value=43 Score=25.40 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=26.8
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhh
Q 040653 12 YLRPDIKRGNISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNEN 56 (228)
Q Consensus 12 ~L~P~ikk~~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~ 56 (228)
.+.+.+-...=|.+ .|-.+++.+|..|..+|..| |=++.+|
T Consensus 12 ~~~~~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 12 GIPSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp ----CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred CCCchhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 34444444445544 56667899999999999998 6666665
No 87
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=26.85 E-value=44 Score=25.21 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhcCchHHhhccCCCCChhhh
Q 040653 27 DELIIRLLNLLANRWSLIAGRLPGRTDNEN 56 (228)
Q Consensus 27 D~lLl~lv~~~G~kWs~IA~~LpGRTd~q~ 56 (228)
|..|..+.+..|..|..+|..| |=+..+|
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 5677888899999999999999 6666665
No 88
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=26.82 E-value=46 Score=25.14 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=23.7
Q ss_pred HHHHHHHHhc--------CchHHhhccCC---CCChhhhhhhhcccc
Q 040653 29 LIIRLLNLLA--------NRWSLIAGRLP---GRTDNENMKSRIIGA 64 (228)
Q Consensus 29 lLl~lv~~~G--------~kWs~IA~~Lp---GRTd~q~~KnR~~kw 64 (228)
.|..+|..+| ++|..||..|. +.+....+|..|.++
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 5777888888 37999999873 222223338885544
No 89
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.42 E-value=90 Score=17.86 Aligned_cols=37 Identities=14% Similarity=0.144 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhh
Q 040653 21 NISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
..++++-..++.++ .-|-....||..| |-+...| +.+
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~l-gis~~Tv-~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKI-SRSRHCI-RVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHH-TCCHHHH-HHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHH-CcCHHHH-HHH
Confidence 46777777777776 4577899999988 5666666 544
No 90
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=26.24 E-value=49 Score=24.28 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=22.4
Q ss_pred HHHHHHHHhc--------CchHHhhccCCCCC----hhhhhhhhcc
Q 040653 29 LIIRLLNLLA--------NRWSLIAGRLPGRT----DNENMKSRII 62 (228)
Q Consensus 29 lLl~lv~~~G--------~kWs~IA~~LpGRT----d~q~~KnR~~ 62 (228)
.|..+|.++| +.|..||..|.--. ...+ |..|.
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~l-k~~Y~ 92 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATL-KAHYE 92 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHH-HHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHH-HHHHH
Confidence 4677777788 37999999984322 3445 88843
No 91
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=26.22 E-value=72 Score=29.33 Aligned_cols=38 Identities=26% Similarity=0.221 Sum_probs=32.9
Q ss_pred CCCHHHHHHHHHHHHHhc-CchHHhhccCC-CCChhhhhhh
Q 040653 21 NISHDEDELIIRLLNLLA-NRWSLIAGRLP-GRTDNENMKS 59 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G-~kWs~IA~~Lp-GRTd~q~~Kn 59 (228)
.||.-|=...+.+..+|| +.-..||..|. |.|..+| +.
T Consensus 125 ~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV-~~ 164 (374)
T 2y9y_A 125 NWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEV-RA 164 (374)
T ss_dssp CSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHH-HH
T ss_pred ccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHH-HH
Confidence 588888888888999999 56999999997 9999999 74
No 92
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=24.86 E-value=41 Score=23.38 Aligned_cols=34 Identities=6% Similarity=0.086 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHH----hcCchHHhhccCCCCChhhhhhhh
Q 040653 25 DEDELIIRLLNL----LANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 25 EED~lLl~lv~~----~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
+.+..++.+.-- .|-.+..||..| |-+...| |.+
T Consensus 21 ~~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV-~~~ 58 (87)
T 1tty_A 21 PREAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERI-RQI 58 (87)
T ss_dssp HHHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHH-HHH
T ss_pred HHHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHH-HHH
Confidence 445666667665 567899999999 7888888 877
No 93
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=24.60 E-value=76 Score=20.77 Aligned_cols=24 Identities=17% Similarity=-0.006 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhcCchHHhhccC
Q 040653 25 DEDELIIRLLNLLANRWSLIAGRL 48 (228)
Q Consensus 25 EED~lLl~lv~~~G~kWs~IA~~L 48 (228)
-|.+.|.++...+|++.+..|..|
T Consensus 19 ~E~~~i~~aL~~~~gn~~~aA~~L 42 (63)
T 3e7l_A 19 FEKIFIEEKLREYDYDLKRTAEEI 42 (63)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 477889999999999999999988
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=24.08 E-value=57 Score=21.56 Aligned_cols=35 Identities=14% Similarity=0.086 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhh
Q 040653 22 ISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 22 WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
.|+.| ..++.++ ..|-.-..||..| |-+...| +.+
T Consensus 17 L~~~e-~~vl~l~-~~g~s~~eIA~~l-~is~~tV-~~~ 51 (79)
T 1x3u_A 17 LSERE-RQVLSAV-VAGLPNKSIAYDL-DISPRTV-EVH 51 (79)
T ss_dssp HCHHH-HHHHHHH-TTTCCHHHHHHHT-TSCHHHH-HHH
T ss_pred CCHHH-HHHHHHH-HcCCCHHHHHHHH-CcCHHHH-HHH
Confidence 34444 4555565 6788899999999 6788888 777
No 95
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=24.00 E-value=43 Score=24.12 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=22.4
Q ss_pred HHHHHHHHhc--------CchHHhhccCC--C-CC-hhhhhhhhccc
Q 040653 29 LIIRLLNLLA--------NRWSLIAGRLP--G-RT-DNENMKSRIIG 63 (228)
Q Consensus 29 lLl~lv~~~G--------~kWs~IA~~Lp--G-RT-d~q~~KnR~~k 63 (228)
.|..+|...| ++|..||..|. . -+ ..++ |..|.+
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~L-k~~Y~k 85 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLL-KSHYER 85 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHH-HHHHTT
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHH-HHHHHH
Confidence 4677777777 47999999863 2 22 3345 888443
No 96
>1wxp_A THO complex subunit 1; death domain, structural genomics, nuclear matrix, riken structural genomics/proteomics initiative, RSGI, transport protein; NMR {Homo sapiens}
Probab=23.34 E-value=72 Score=23.57 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCchHHhhccCCCCChhhh
Q 040653 27 DELIIRLLNLLANRWSLIAGRLPGRTDNEN 56 (228)
Q Consensus 27 D~lLl~lv~~~G~kWs~IA~~LpGRTd~q~ 56 (228)
+..+-.+....|..|..+|..| |=++.+|
T Consensus 18 ~~~~~~ia~~lg~~Wk~LAr~L-g~~~~~I 46 (110)
T 1wxp_A 18 GEQIEVFANKLGEQWKILAPYL-EMKDSEI 46 (110)
T ss_dssp HHHHHHHHHHHTTTHHHHTTTT-TCCHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHh-CCCHHHH
Confidence 5566677888999999999999 6666665
No 97
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.42 E-value=61 Score=24.64 Aligned_cols=35 Identities=11% Similarity=0.185 Sum_probs=23.2
Q ss_pred HHHHHHHHhc--------CchHHhhccCCCC---C-hhhhhhhhcccc
Q 040653 29 LIIRLLNLLA--------NRWSLIAGRLPGR---T-DNENMKSRIIGA 64 (228)
Q Consensus 29 lLl~lv~~~G--------~kWs~IA~~LpGR---T-d~q~~KnR~~kw 64 (228)
.|..+|.++| ++|..||..|.-- + ...+ |..|.++
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~L-r~~Y~k~ 92 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHI-RGHYERI 92 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHH-HHHHHHT
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHH-HHHHHHH
Confidence 5677788888 3799999987322 2 2345 8884443
No 98
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=22.41 E-value=55 Score=25.16 Aligned_cols=36 Identities=19% Similarity=0.406 Sum_probs=23.1
Q ss_pred HHHHHHHHhc--------CchHHhhccC--CCCC--hhhhhhhhcccc
Q 040653 29 LIIRLLNLLA--------NRWSLIAGRL--PGRT--DNENMKSRIIGA 64 (228)
Q Consensus 29 lLl~lv~~~G--------~kWs~IA~~L--pGRT--d~q~~KnR~~kw 64 (228)
.|..+|.++| +.|..||..| |... ....+|.+|.++
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~ 93 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQY 93 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTT
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 5667777788 3799999987 4322 223338885543
No 99
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=22.06 E-value=31 Score=26.55 Aligned_cols=38 Identities=18% Similarity=0.217 Sum_probs=26.8
Q ss_pred HHHHHHHHhcC--------chHHhhccCCCCChhhhhhhhccccchhhhH
Q 040653 29 LIIRLLNLLAN--------RWSLIAGRLPGRTDNENMKSRIIGAPTLENK 70 (228)
Q Consensus 29 lLl~lv~~~G~--------kWs~IA~~LpGRTd~q~~KnR~~kw~~~l~k 70 (228)
.|..+|.+.|+ +|..||..|.--....+ |.. |..+|-+
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~L-r~~---Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQL-ESI---YFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHH-HHH---HHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCChHHHH-HHH---HHHHHHH
Confidence 56777788883 69999998743337777 999 5555544
No 100
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=21.67 E-value=54 Score=23.23 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=27.2
Q ss_pred CCCHHHHHHHHHHHHHhcCchHHhhccCCCCChhhhhhhh
Q 040653 21 NISHDEDELIIRLLNLLANRWSLIAGRLPGRTDNENMKSR 60 (228)
Q Consensus 21 ~WT~EED~lLl~lv~~~G~kWs~IA~~LpGRTd~q~~KnR 60 (228)
..|+.|-++ +.++ ..|-.-..||..| |-+...| +.|
T Consensus 27 ~Lt~~e~~v-l~l~-~~g~s~~eIA~~l-~is~~tV-~~~ 62 (95)
T 3c57_A 27 GLTDQERTL-LGLL-SEGLTNKQIADRM-FLAEKTV-KNY 62 (95)
T ss_dssp CCCHHHHHH-HHHH-HTTCCHHHHHHHH-TCCHHHH-HHH
T ss_pred cCCHHHHHH-HHHH-HcCCCHHHHHHHH-CcCHHHH-HHH
Confidence 356666555 4455 7788899999999 7788889 887
Done!