BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040654
(306 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYZ|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 10.0 A Resolution
From Electron Micrograph
Length = 340
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/272 (29%), Positives = 135/272 (49%), Gaps = 31/272 (11%)
Query: 27 KQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQT 86
+Q R + ++ ++PS+ ++ F+ +++ W+A AE L A+L+F L ++ +
Sbjct: 20 QQMGRDLYDDDDKDPSSRSIMVAFKGVWTQAFWKAVTAEFL--AMLIFVLLSVGSTINWG 77
Query: 87 DTKTP---NLVMSTLVXXXXXXXXXXXF-PISGGHINPLVSFAAALTGITSFTRAAIYIL 142
++ P ++V+ +L F ISGGHINP V+ A T S ++ YI
Sbjct: 78 GSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYIT 137
Query: 143 AQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICS 202
AQC+G I GA L V + +GG + V G + G G L +E+I +
Sbjct: 138 AQCLGAIIGAGILYLVTPPSV-----VGGLGVTTV----HGNLTAGHG----LLVELIIT 184
Query: 203 FVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCL 262
F +F +++ + D ++ G V + I +G L ++ Y GA +NPAR
Sbjct: 185 FQLVF-TIFASCDDKRTDVTGSVALAIGFSVAIGHLFAIN--------YTGASMNPARSF 235
Query: 263 GPALVRGGHLWDRHWVFWAGPAI-ACVAFALY 293
GPA++ G W+ HW++W GP I A +A ALY
Sbjct: 236 GPAVIMGN--WENHWIYWVGPIIGAVLAGALY 265
>pdb|2D57|A Chain A, Double Layered 2d Crystal Structure Of Aquaporin-4
(Aqp4m23) At 3.2 A Resolution By Electron
Crystallography
Length = 301
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 125/252 (49%), Gaps = 31/252 (12%)
Query: 47 ILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTP---NLVMSTLVXXXX 103
++ F+ +++ W+A AE L A+L+F L ++ + ++ P ++V+ +L
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFL--AMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLS 58
Query: 104 XXXXXXXF-PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKK 162
F ISGGHINP V+ A T S ++ YI AQC+G I GA L V
Sbjct: 59 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 118
Query: 163 IAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKAL 222
+ +GG + V G + G G L +E+I +F +F +++ + DS++
Sbjct: 119 V-----VGGLGVTTV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVT 164
Query: 223 GRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAG 282
G V + I +G L ++ Y GA +NPAR GPA++ G W+ HW++W G
Sbjct: 165 GSVALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVG 214
Query: 283 PAI-ACVAFALY 293
P I A +A ALY
Sbjct: 215 PIIGAVLAGALY 226
>pdb|2ZZ9|A Chain A, Structure Of Aquaporin-4 S180d Mutant At 2.8 A Resolution
By Electron Crystallography
Length = 301
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/252 (30%), Positives = 124/252 (49%), Gaps = 31/252 (12%)
Query: 47 ILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTP---NLVMSTLVXXXX 103
++ F+ +++ W+A AE L A+L+F L ++ + ++ P ++V+ +L
Sbjct: 1 MVAFKGVWTQAFWKAVTAEFL--AMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLS 58
Query: 104 XXXXXXXF-PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKK 162
F ISGGHINP V+ A T S ++ YI AQC+G I GA L V
Sbjct: 59 IATMVQCFGHISGGHINPAVTVAMVCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPS 118
Query: 163 IAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKAL 222
+ +GG + V G + G G L +E+I +F +F +++ + D ++
Sbjct: 119 V-----VGGLGVTTV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDDKRTDVT 164
Query: 223 GRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAG 282
G V + I +G L ++ Y GA +NPAR GPA++ G W+ HW++W G
Sbjct: 165 GSVALAIGFSVAIGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVG 214
Query: 283 PAI-ACVAFALY 293
P I A +A ALY
Sbjct: 215 PIIGAVLAGALY 226
>pdb|3GD8|A Chain A, Crystal Structure Of Human Aquaporin 4 At 1.8 And Its
Mechanism Of Conductance
Length = 223
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 114/234 (48%), Gaps = 30/234 (12%)
Query: 59 WRASMAELLGTAVLVFALDTIVISSIQTDTKTP---NLVMSTLVXXXXXXXXXXXF-PIS 114
W+A AE L A+L+F L ++ + T+ P ++V+ +L F IS
Sbjct: 4 WKAVTAEFL--AMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHIS 61
Query: 115 GGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTL 174
GGHINP V+ A T S ++ YI AQC+G I GA L V + +GG +
Sbjct: 62 GGHINPAVTVAMVCTRKISIAKSVFYIAAQCLGAIIGAGILYLVTPPSV-----VGGLGV 116
Query: 175 NVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTV 234
+V G + G G L +E+I +F +F +++ + DS++ G + + I
Sbjct: 117 TMV----HGNLTAGHG----LLVELIITFQLVF-TIFASCDSKRTDVTGSIALAIGFSVA 167
Query: 235 LGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACV 288
+G L ++ Y GA +NPAR GPA++ G W+ HW++W GP I V
Sbjct: 168 IGHLFAIN--------YTGASMNPARSFGPAVIMGN--WENHWIYWVGPIIGAV 211
>pdb|2B5F|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|C Chain C, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
pdb|2B5F|D Chain D, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In An
Open Conformation To 3.9 Resolution
Length = 303
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 32/259 (12%)
Query: 50 FEDIFSVKVW---RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVXXXXXXX 106
F D+ +K+W RA++AE + T + ++ I ++++ +K + S +
Sbjct: 26 FFDLGELKLWSFWRAAIAEFIATLLFLY----ITVATVIGHSKETVVCGSVGLLGIAWAF 81
Query: 107 XXXXF-------PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVV 159
F ISGGHINP V+F L S RA +Y++AQC+G I G ++A +
Sbjct: 82 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFM 141
Query: 160 TKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQA 219
K +N GG V +G AL EII +FV ++ +V+ A D +++
Sbjct: 142 --KGPYNQFGGGAN----------SVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRS 188
Query: 220 KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWV 278
V I+ +G VF+ T G G+NPAR G A++ +WD W+
Sbjct: 189 ARDSHVP--ILAPLPIGFAVFMVHLATIP--ITGTGINPARSFGAAVIFNSNKVWDDQWI 244
Query: 279 FWAGPAIACVAFALYTKLI 297
FW GP I A Y + +
Sbjct: 245 FWVGPFIGAAVAAAYHQYV 263
>pdb|3CN6|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
pdb|3CN6|B Chain B, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S274e
Mutant
Length = 304
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 32/259 (12%)
Query: 50 FEDIFSVKVW---RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVXXXXXXX 106
F D+ +K+W RA++AE + T + ++ I ++++ +K + S +
Sbjct: 49 FFDLGELKLWSFWRAAIAEFIATLLFLY----ITVATVIGHSKETVVCGSVGLLGIAWAF 104
Query: 107 XXXXF-------PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVV 159
F ISGGHINP V+F L S RA +Y++AQC+G I G ++A +
Sbjct: 105 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFM 164
Query: 160 TKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQA 219
K +N GG V +G AL EII +FV ++ +V+ A D +++
Sbjct: 165 --KGPYNQFGGGAN----------SVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRS 211
Query: 220 KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWV 278
V I+ +G VF+ T G G+NPAR G A++ +WD W+
Sbjct: 212 ARDSHVP--ILAPLPIGFAVFMVHLATIP--ITGTGINPARSFGAAVIFNSNKVWDDQWI 267
Query: 279 FWAGPAIACVAFALYTKLI 297
FW GP I A Y + +
Sbjct: 268 FWVGPFIGAAVAAAYHQYV 286
>pdb|1Z98|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
pdb|1Z98|M Chain M, Crystal Structure Of The Spinach Aquaporin Sopip2;1 In A
Closed Conformation
Length = 281
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 75/259 (28%), Positives = 119/259 (45%), Gaps = 32/259 (12%)
Query: 50 FEDIFSVKVW---RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVXXXXXXX 106
F D+ +K+W RA++AE + T + ++ I ++++ +K + S +
Sbjct: 26 FFDLGELKLWSFWRAAIAEFIATLLFLY----ITVATVIGHSKETVVCGSVGLLGIAWAF 81
Query: 107 XXXXF-------PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVV 159
F ISGGHINP V+F L S RA +Y++AQC+G I G ++A +
Sbjct: 82 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLLRALVYMIAQCLGAICGVGLVKAFM 141
Query: 160 TKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQA 219
K +N GG V +G AL EII +FV ++ +V+ A D +++
Sbjct: 142 --KGPYNQFGGGAN----------SVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRS 188
Query: 220 KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWV 278
V I+ +G VF+ T G G+NPAR G A++ +WD W+
Sbjct: 189 ARDSHVP--ILAPLPIGFAVFMVHLATIP--ITGTGINPARSFGAAVIFNSNKVWDDQWI 244
Query: 279 FWAGPAIACVAFALYTKLI 297
FW GP I A Y + +
Sbjct: 245 FWVGPFIGAAVAAAYHQYV 263
>pdb|3CN5|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e,
S274e Mutant
Length = 304
Score = 81.3 bits (199), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 32/259 (12%)
Query: 50 FEDIFSVKVW---RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVXXXXXXX 106
F D+ +K+W RA++AE + T + ++ I ++++ +K + S +
Sbjct: 49 FFDLGELKLWSFWRAAIAEFIATLLFLY----ITVATVIGHSKETVVCGSVGLLGIAWAF 104
Query: 107 XXXXF-------PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVV 159
F ISGGHINP V+F L RA +Y++AQC+G I G ++A +
Sbjct: 105 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM 164
Query: 160 TKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQA 219
K +N GG V +G AL EII +FV ++ +V+ A D +++
Sbjct: 165 --KGPYNQFGGGAN----------SVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRS 211
Query: 220 KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWV 278
V I+ +G VF+ T G G+NPAR G A++ +WD W+
Sbjct: 212 ARDSHVP--ILAPLPIGFAVFMVHLATIP--ITGTGINPARSFGAAVIFNSNKVWDDQWI 267
Query: 279 FWAGPAIACVAFALYTKLI 297
FW GP I A Y + +
Sbjct: 268 FWVGPFIGAAVAAAYHQYV 286
>pdb|3CLL|A Chain A, Crystal Structure Of The Spinach Aquaporin Sopip2;1 S115e
Mutant
Length = 300
Score = 80.9 bits (198), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 118/259 (45%), Gaps = 32/259 (12%)
Query: 50 FEDIFSVKVW---RASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVXXXXXXX 106
F D+ +K+W RA++AE + T + ++ I ++++ +K + S +
Sbjct: 45 FFDLGELKLWSFWRAAIAEFIATLLFLY----ITVATVIGHSKETVVCGSVGLLGIAWAF 100
Query: 107 XXXXF-------PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVV 159
F ISGGHINP V+F L RA +Y++AQC+G I G ++A +
Sbjct: 101 GGMIFVLVYCTAGISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFM 160
Query: 160 TKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQA 219
K +N GG V +G AL EII +FV ++ +V+ A D +++
Sbjct: 161 --KGPYNQFGGGAN----------SVALGYNKGTALGAEIIGTFVLVY-TVFSATDPKRS 207
Query: 220 KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV-RGGHLWDRHWV 278
V I+ +G VF+ T G G+NPAR G A++ +WD W+
Sbjct: 208 ARDSHVP--ILAPLPIGFAVFMVHLATIP--ITGTGINPARSFGAAVIFNSNKVWDDQWI 263
Query: 279 FWAGPAIACVAFALYTKLI 297
FW GP I A Y + +
Sbjct: 264 FWVGPFIGAAVAAAYHQYV 282
>pdb|1J4N|A Chain A, Crystal Structure Of The Aqp1 Water Channel
Length = 271
Score = 79.7 bits (195), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 107/243 (44%), Gaps = 32/243 (13%)
Query: 59 WRASMAELLGTAVLVF-------ALDTIVISSIQTDTKTPNLVMSTLVXXXXXXXXXXXF 111
WRA +AE L + +F + S+ T N+ +S
Sbjct: 11 WRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVG 70
Query: 112 PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGG 171
ISG H+NP V+ L+ S RA +YI+AQCVG I A A+ + +T + N SLG
Sbjct: 71 HISGAHLNPAVTLGLLLSCQISVLRAIMYIIAQCVGAIV-ATAILSGITSSLPDN-SLG- 127
Query: 172 CTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVI 231
LN + P G+ + Q L +EII + + V D R+ G + I
Sbjct: 128 --LNALAP--------GVNSGQGLGIEIIGTLQLVLC-VLATTDRRRRDLGGSGPLAIGF 176
Query: 232 GTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVAF 290
LG L+ + Y G G+NPAR G +++ H + HW+FW GP I A +A
Sbjct: 177 SVALGHLLAID--------YTGCGINPARSFGSSVIT--HNFQDHWIFWVGPFIGAALAV 226
Query: 291 ALY 293
+Y
Sbjct: 227 LIY 229
>pdb|2B6O|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp0) (Lens Mip) At 1.9a Resolution, In A Closed Pore
State
Length = 263
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISG H+NP V+FA + S RA Y++AQ +G + GA L +V + N +
Sbjct: 62 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA---- 117
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
LN + PG V +G QA +EI + F+ ++ +D R+ LG V + +
Sbjct: 118 -LNTLHPG----VSVG----QATIVEIFLTLQFVLC-IFATYDERRNGRLGSVALAVGFS 167
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 285
LG L + Y GAG+NPAR PA++ + HWV+W GP I
Sbjct: 168 LTLGHLFGMY--------YTGAGMNPARSFAPAILTRN--FTNHWVYWVGPVI 210
>pdb|1YMG|A Chain A, The Channel Architecture Of Aquaporin O At 2.2 Angstrom
Resolution
pdb|2B6P|A Chain A, X-Ray Structure Of Lens Aquaporin-0 (Aqp0) (Lens Mip) In
An Open Pore State
pdb|2C32|A Chain A, Co-Axial Association Of Recombinant Eye Lens Aquaporin-0
Observed In Loosely Packed 3d-Crystals
Length = 263
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISG H+NP V+FA + S RA Y++AQ +G + GA L +V + N +
Sbjct: 62 ISGAHVNPAVTFAFLVGSQMSLLRAICYMVAQLLGAVAGAAVLYSVTPPAVRGNLA---- 117
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
LN + PG V +G QA +EI + F+ ++ +D R+ LG V + +
Sbjct: 118 -LNTLHPG----VSVG----QATIVEIFLTLQFVLC-IFATYDERRNGRLGSVALAVGFS 167
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 285
LG L + Y GAG+NPAR PA++ + HWV+W GP I
Sbjct: 168 LTLGHLFGMY--------YTGAGMNPARSFAPAILTRN--FTNHWVYWVGPVI 210
>pdb|1FQY|A Chain A, Structure Of Aquaporin-1 At 3.8 A Resolution By Electron
Crystallography
pdb|1IH5|A Chain A, Crystal Structure Of Aquaporin-1
pdb|1H6I|A Chain A, A Refined Structure Of Human Aquaporin 1
Length = 269
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/233 (31%), Positives = 104/233 (44%), Gaps = 31/233 (13%)
Query: 59 WRASMAELLGTAVLVF-----ALD-TIVISSIQTDTKTPNLVMSTLVXXXXXXXXXXXFP 112
WRA +AE L T + VF AL + + QT + N+ +S
Sbjct: 11 WRAVVAEFLATTLFVFISIGSALGFKYPVGNNQTAVQ-DNVKVSLAFGLSIATLAQSVGH 69
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISG H+NP V+ L+ S RA +YI+AQCVG I A A+ + +T + N SLG
Sbjct: 70 ISGAHLNPAVTLGLLLSCQISIFRALMYIIAQCVGAIV-ATAILSGITSSLTGN-SLGRN 127
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
L G+ + Q L +EII + + V D R+ G + I +
Sbjct: 128 DL-----------ADGVNSGQGLGIEIIGTLQLVLC-VLATTDRRRRDLGGSAPLAIGLS 175
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 285
LG L+ + Y G G+NPAR G A++ H + HW+FW GP I
Sbjct: 176 VALGHLLAID--------YTGCGINPARSFGSAVIT--HNFSNHWIFWVGPFI 218
>pdb|1SOR|A Chain A, Aquaporin-0 Membrane Junctions Reveal The Structure Of A
Closed Water Pore
Length = 235
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 84/173 (48%), Gaps = 24/173 (13%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISG H+NP V+FA + S RA Y++AQ +G + GA L +V + N +
Sbjct: 58 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA---- 113
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
LN + PG V +G QA +EI + F+ ++ +D R+ LG V + +
Sbjct: 114 -LNTLHPG----VSVG----QATIVEIFLTLQFVLC-IFATYDERRNGRLGSVALAVGFS 163
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 285
LG L + Y GAG+NPAR PA++ + HWV+W GP I
Sbjct: 164 LTLGHLFGMY--------YTGAGMNPARSFAPAILTRN--FTNHWVYWVGPVI 206
>pdb|3M9I|A Chain A, Electron Crystallographic Structure Of Lens Aquaporin-0
(Aqp Mip) In E. Coli Polar Lipids
Length = 220
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 57/173 (32%), Positives = 83/173 (47%), Gaps = 24/173 (13%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISG H+NP V+FA + S RA Y++AQ +G + GA L +V + N +
Sbjct: 56 ISGAHVNPAVTFAFLVGSQMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLA---- 111
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
LN + PG V +G QA +EI + F+ ++ +D R+ LG V + +
Sbjct: 112 -LNTLHPG----VSVG----QATIVEIFLTLQFVL-CIFATYDERRNGRLGSVALAVGFS 161
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 285
LG L Y GAG+NPAR PA++ + HWV+W GP I
Sbjct: 162 LTLGHLF--------GMYYTGAGMNPARSFAPAILTRN--FTNHWVYWVGPVI 204
>pdb|3D9S|A Chain A, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|B Chain B, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|C Chain C, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
pdb|3D9S|D Chain D, Human Aquaporin 5 (Aqp5) - High Resolution X-Ray Structure
Length = 266
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 75/255 (29%), Positives = 110/255 (43%), Gaps = 30/255 (11%)
Query: 51 EDIFSVKVWRASMAELLGTAVLVF-ALDTIVISSIQTDTKTPNLVMSTLVXXXXXXXXXX 109
+++ SV +A AE L T + VF L S+++ + P ++ L
Sbjct: 4 KEVCSVAFLKAVFAEFLATLIFVFFGLG----SALKWPSALPTILQIALAFGLAIGTLAQ 59
Query: 110 XF-PISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFS 168
P+SGGHINP ++ A + S RA Y+ AQ VG I GA L V A
Sbjct: 60 ALGPVSGGHINPAITLALLVGNQISLLRAFFYVAAQLVGAIAGAGILYGVAPLN-ARGNL 118
Query: 169 LGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVC 228
N G QA+ +E+I +F L ++ + DSR+ +G +
Sbjct: 119 AVNALNNNTTQG------------QAMVVELILTFQ-LALCIFASTDSRRTSPVGSPALS 165
Query: 229 IVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-AC 287
I + LG LV + + G +NPAR GPA+V HWVFW GP + A
Sbjct: 166 IGLSVTLGHLVGIY--------FTGCSMNPARSFGPAVVM-NRFSPAHWVFWVGPIVGAV 216
Query: 288 VAFALYTKLIPSQNL 302
+A LY L+ +L
Sbjct: 217 LAAILYFYLLFPNSL 231
>pdb|3NE2|A Chain A, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|B Chain B, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|C Chain C, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|D Chain D, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|E Chain E, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|F Chain F, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|G Chain G, Archaeoglobus Fulgidus Aquaporin
pdb|3NE2|H Chain H, Archaeoglobus Fulgidus Aquaporin
Length = 246
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/188 (30%), Positives = 82/188 (43%), Gaps = 25/188 (13%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISG HINP V+ A G YI+AQ +G G+L A V A ++GG
Sbjct: 77 ISGAHINPAVTIALWSIGRFPGREVVPYIVAQFIGAALGSLLFLACVGPAAA---TVGG- 132
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
L P P G+G QA+ E I +F+ + + +A D R + + + +G
Sbjct: 133 -LGATAPFP------GIGYGQAILTEAIGTFLLMLVIMGVAVDERAPPGFAGLVIGLTVG 185
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPAL---VRGGHLWDRHWVFWAGPAIACVA 289
+ +T G+ LNPAR GP L + G +LW ++ GP + VA
Sbjct: 186 GI----------ITTIGNITGSSLNPARTFGPYLGDSLMGINLWQYFPIYVIGPIVGAVA 235
Query: 290 FA-LYTKL 296
A LY L
Sbjct: 236 AAWLYNYL 243
>pdb|2EVU|A Chain A, Crystal Structure Of Aquaporin Aqpm At 2.3a Resolution
pdb|2F2B|A Chain A, Crystal Structure Of Integral Membrane Protein Aquaporin
Aqpm At 1.68a Resolution
Length = 246
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 112/268 (41%), Gaps = 46/268 (17%)
Query: 56 VKVWRASMAELLGTAVLVF-----ALDTIVISSIQTDTKTPNLVMSTLVXXXXXXXXXXX 110
V + + +AE +GT +LVF A T++I+S T N+ + L
Sbjct: 2 VSLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLA 61
Query: 111 F------------PISGGHINPLVSFAAALTGITSFTRAAI--YILAQCVGGIFGALALE 156
F ISG HINP V+ L + F + YI+AQ +G FG+
Sbjct: 62 FGFAIAASIYALGNISGCHINPAVTIG--LWSVKKFPGREVVPYIIAQLLGAAFGSFIFL 119
Query: 157 AVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDS 216
A ++GG L P P G+ QA+ E++ +F+ + + +A D
Sbjct: 120 QCAGIGAA---TVGG--LGATAPFP------GISYWQAMLAEVVGTFLLMITIMGIAVDE 168
Query: 217 RQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPAL----VRGGHL 272
R K G ++GL V+ +T +G+ LNPAR GP L G L
Sbjct: 169 RAPKGFA--------GIIIGLT--VAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDL 218
Query: 273 WDRHWVFWAGPAIACVAFALYTKLIPSQ 300
W+ + ++ GP + V AL + + S+
Sbjct: 219 WNYYSIYVIGPIVGAVLAALTYQYLTSE 246
>pdb|2W1P|A Chain A, 1.4 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 8.0
pdb|2W2E|A Chain A, 1.15 Angstrom Crystal Structure Of P.Pastoris Aquaporin,
Aqy1, In A Closed Conformation At Ph 3.5
Length = 279
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/184 (26%), Positives = 81/184 (44%), Gaps = 28/184 (15%)
Query: 111 FPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLG 170
+ +SGG++NP V+ A L R + Q V G+ A A A+ +IA +LG
Sbjct: 104 YRVSGGNLNPAVTLALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIAFANALG 163
Query: 171 GCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIV 230
G G + L+LE + + + +A + +A
Sbjct: 164 G----------------GASRTRGLFLEAFGTAILCLTVLMLAVEKHRATWFAPF----- 202
Query: 231 IGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI-ACVA 289
V+G+ + ++ + Y GAGLNPAR GPA V + HW++W GP + A +A
Sbjct: 203 ---VIGIALLIAHLICIY--YTGAGLNPARSFGPA-VAARSFPNYHWIYWLGPILGAFLA 256
Query: 290 FALY 293
++++
Sbjct: 257 YSIW 260
>pdb|3LLQ|A Chain A, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
pdb|3LLQ|B Chain B, Aquaporin Structure From Plant Pathogen Agrobacterium
Tumerfaciens
Length = 256
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 79/192 (41%), Gaps = 23/192 (11%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP VS + G + Y++AQ G I A AL + T K LGG
Sbjct: 85 ISGGHFNPAVSVGLTVAGRFPASSLVPYVIAQVAGAIVAAAALYVIATGK--AGIDLGGF 142
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVC---I 229
N G P G AL +EII + FL + GRV I
Sbjct: 143 ASNGY--GEHSPG--GYSLVSALLIEIILTAFFLIVIL--------GSTHGRVPAGFAPI 190
Query: 230 VIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVA 289
IG L L+ +S VT +NPAR G AL GG + W+FW P + A
Sbjct: 191 AIGLALTLIHLISIPVTNTS------VNPARSTGQALFVGGWALQQLWLFWLAPIVGGAA 244
Query: 290 FALYTKLIPSQN 301
A+ KL ++
Sbjct: 245 GAVIWKLFGEKD 256
>pdb|3NK5|A Chain A, Crystal Structure Of Aqpz Mutant F43w
pdb|3NK5|B Chain B, Crystal Structure Of Aqpz Mutant F43w
Length = 234
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G P G AL +E++ S FL + K I IG
Sbjct: 120 ASNGY--GEHSPG--GYSMLSALVVELVLSAGFL-----LVIHGATDKFAPAGFAPIAIG 170
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 171 LALTLIHLISIPVTNTS------VNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|1RC2|B Chain B, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|1RC2|A Chain A, 2.5 Angstrom Resolution X-Ray Structure Of Aquaporin Z
pdb|2ABM|A Chain A, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|B Chain B, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|C Chain C, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|D Chain D, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|E Chain E, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|F Chain F, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|G Chain G, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
pdb|2ABM|H Chain H, Crystal Structure Of Aquaporin Z Tetramer Reveals Both
Open And Closed Water-Conducting Channels
Length = 231
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 57 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 116
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G P G AL +E++ S FL + A D I IG
Sbjct: 117 ASNGY--GEHSPG--GYSMLSALVVELVLSAGFLLV-IHGATDKFAPAGFAP----IAIG 167
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 168 LALTLIHLISIPVTNTS------VNPARSTAVAIFQGGWALEQLWFFW 209
>pdb|2O9D|A Chain A, Crystal Structure Of Aqpz Mutant T183c.
pdb|2O9D|B Chain B, Crystal Structure Of Aqpz Mutant T183c
Length = 234
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G P G AL +E++ S FL + A D I IG
Sbjct: 120 ASNGY--GEHSPG--GYSMLSALVVELVLSAGFLLV-IHGATDKFAPAGF----APIAIG 170
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 171 LALTLIHLISIPVT------NCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9E|A Chain A, Crystal Structure Of Aqpz Mutant T183c Complexed With
Mercury
Length = 234
Score = 44.3 bits (103), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G P G AL +E++ S FL + A D I IG
Sbjct: 120 ASNGY--GEHSPG--GYSMLSALVVELVLSAGFLLV-IHGATDKFAPAGF----APIAIG 170
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 171 LALTLIHLISIPVT------NCSVNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKC|A Chain A, Crystal Structure Of Aqpz F43w,H174g,T183f
pdb|3NKC|B Chain B, Crystal Structure Of Aqpz F43w,H174g,T183f
Length = 234
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 66/168 (39%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G G AL +E++ S FL + K I IG
Sbjct: 120 ASNGYGEHSPG----GYSMLSALVVELVLSAGFL-----LVIHGATDKFAPAGFAPIAIG 170
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 171 LALTLIGLISIPVTNFS------VNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|3NKA|A Chain A, Crystal Structure Of Aqpz H174g,T183f
pdb|3NKA|B Chain B, Crystal Structure Of Aqpz H174g,T183f
Length = 234
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/168 (29%), Positives = 68/168 (40%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G P G AL +E++ S FL + A D I IG
Sbjct: 120 ASNGY--GEHSPG--GYSMLSALVVELVLSAGFLLV-IHGATDKFAPAGF----APIAIG 170
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 171 LALTLIGLISIPVTNFS------VNPARSTAVAIFQGGWALEQLWFFW 212
>pdb|2O9F|A Chain A, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9F|B Chain B, Crystal Structure Of Aqpz Mutant L170c
pdb|2O9G|A Chain A, Crystal Structure Of Aqpz Mutant L170c Complexed With
Mercury
Length = 234
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 67/168 (39%), Gaps = 15/168 (8%)
Query: 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172
ISGGH NP V+ G Y++AQ VGGI A L + + K + + G
Sbjct: 60 ISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGF 119
Query: 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIG 232
N G P G AL +E++ S FL + A D I IG
Sbjct: 120 ASNGY--GEHSPG--GYSMLSALVVELVLSAGFLLV-IHGATDKFAPAGF----APIAIG 170
Query: 233 TVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFW 280
L+ +S VT +NPAR A+ +GG ++ W FW
Sbjct: 171 LACTLIHLISIPVTNTS------VNPARSTAVAIFQGGWALEQLWFFW 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,699,280
Number of Sequences: 62578
Number of extensions: 328503
Number of successful extensions: 782
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 32
length of query: 306
length of database: 14,973,337
effective HSP length: 98
effective length of query: 208
effective length of database: 8,840,693
effective search space: 1838864144
effective search space used: 1838864144
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)