Query 040654
Match_columns 306
No_of_seqs 250 out of 1583
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 10:30:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0223 Aquaporin (major intri 100.0 1.7E-50 3.7E-55 358.4 17.3 225 52-301 4-228 (238)
2 KOG0224 Aquaporin (major intri 100.0 5.7E-50 1.2E-54 357.4 17.5 237 54-303 27-279 (316)
3 PLN00184 aquaporin NIP1; Provi 100.0 4.7E-49 1E-53 361.2 24.0 225 55-300 50-274 (296)
4 PTZ00016 aquaglyceroporin; Pro 100.0 7.2E-48 1.6E-52 354.3 24.2 232 56-302 47-293 (294)
5 COG0580 GlpF Glycerol uptake f 100.0 5.3E-47 1.2E-51 335.2 20.0 226 58-298 4-239 (241)
6 PLN00182 putative aquaporin NI 100.0 1.1E-45 2.4E-50 337.0 23.5 215 56-298 39-253 (283)
7 PRK05420 aquaporin Z; Provisio 100.0 7.3E-46 1.6E-50 330.8 21.8 226 59-300 2-229 (231)
8 PF00230 MIP: Major intrinsic 100.0 1.9E-46 4.2E-51 334.7 15.6 221 52-294 1-227 (227)
9 PLN00026 aquaporin NIP; Provi 100.0 2.7E-45 5.9E-50 335.7 20.8 218 56-302 68-285 (298)
10 PLN00166 aquaporin TIP2; Provi 100.0 1.4E-44 3E-49 325.7 21.5 219 54-298 13-236 (250)
11 PLN00027 aquaporin TIP; Provis 100.0 1.2E-44 2.5E-49 327.0 20.9 219 55-299 16-239 (252)
12 PLN00167 aquaporin TIP5; Provi 100.0 8.8E-44 1.9E-48 321.2 21.9 221 55-302 18-243 (256)
13 PLN00183 putative aquaporin NI 100.0 4.6E-43 9.9E-48 318.7 20.7 230 43-301 28-258 (274)
14 cd00333 MIP Major intrinsic pr 100.0 6.8E-42 1.5E-46 305.6 21.1 226 60-297 1-228 (228)
15 TIGR00861 MIP MIP family chann 100.0 3.8E-39 8.2E-44 285.7 17.4 211 64-294 1-216 (216)
16 PLN00182 putative aquaporin NI 99.6 5.7E-15 1.2E-19 135.3 10.2 98 57-160 157-254 (283)
17 cd00333 MIP Major intrinsic pr 99.6 1E-14 2.2E-19 130.4 8.4 99 56-157 127-227 (228)
18 PLN00026 aquaporin NIP; Provi 99.5 2.8E-14 6E-19 131.3 10.4 98 57-160 185-282 (298)
19 PLN00183 putative aquaporin NI 99.5 5.1E-14 1.1E-18 128.6 9.9 100 58-163 160-259 (274)
20 TIGR00861 MIP MIP family chann 99.5 1E-13 2.2E-18 122.9 9.7 95 57-154 120-215 (216)
21 PLN00184 aquaporin NIP1; Provi 99.4 4.5E-13 9.7E-18 123.6 9.1 106 188-299 50-155 (296)
22 KOG0223 Aquaporin (major intri 99.4 3.1E-13 6.7E-18 120.5 7.1 99 57-162 130-228 (238)
23 PLN00166 aquaporin TIP2; Provi 99.4 6.9E-13 1.5E-17 119.9 8.8 107 189-299 15-124 (250)
24 PLN00167 aquaporin TIP5; Provi 99.3 3.9E-12 8.5E-17 115.3 9.7 108 189-299 19-128 (256)
25 PLN00027 aquaporin TIP; Provis 99.3 5.2E-12 1.1E-16 114.4 9.3 107 190-299 18-126 (252)
26 PTZ00016 aquaglyceroporin; Pro 99.3 1.5E-11 3.1E-16 113.7 8.0 103 190-298 48-150 (294)
27 PRK05420 aquaporin Z; Provisio 99.2 5.3E-11 1.2E-15 106.5 8.6 99 57-161 130-229 (231)
28 PF00230 MIP: Major intrinsic 99.0 5.9E-10 1.3E-14 99.4 7.2 94 57-154 133-226 (227)
29 COG0580 GlpF Glycerol uptake f 98.9 1.1E-09 2.4E-14 97.7 5.9 107 191-300 4-110 (241)
30 KOG0224 Aquaporin (major intri 98.8 4.6E-09 9.9E-14 95.2 4.7 96 189-291 29-126 (316)
31 COG2116 FocA Formate/nitrite f 93.3 3.1 6.8E-05 38.0 13.6 194 92-304 64-263 (265)
32 PRK11562 nitrite transporter N 81.9 42 0.0009 30.8 13.7 109 94-210 60-169 (268)
33 COG4760 Predicted membrane pro 76.1 17 0.00038 31.9 7.9 117 4-131 4-121 (276)
34 PF12811 BaxI_1: Bax inhibitor 47.3 2.3E+02 0.0051 26.1 12.1 44 117-160 110-165 (274)
35 PF04632 FUSC: Fusaric acid re 45.7 3.4E+02 0.0075 27.6 14.1 43 119-161 371-413 (650)
36 PF07857 DUF1632: CEO family ( 44.4 94 0.002 28.3 7.1 27 135-161 217-243 (254)
37 PRK09713 focB putative formate 42.5 2.8E+02 0.006 25.6 12.9 108 93-210 68-179 (282)
38 PF01226 Form_Nir_trans: Forma 40.5 1.7E+02 0.0036 26.4 8.2 110 93-210 58-169 (250)
39 PF08370 PDR_assoc: Plant PDR 37.3 50 0.0011 23.5 3.3 30 259-290 9-38 (65)
40 PRK10805 formate transporter; 34.8 3.7E+02 0.008 24.8 16.7 110 93-210 69-180 (285)
41 PF03033 Glyco_transf_28: Glyc 34.6 12 0.00026 29.6 -0.2 18 114-131 8-25 (139)
42 PRK10631 p-hydroxybenzoic acid 33.5 5.8E+02 0.013 26.6 12.2 47 115-161 380-426 (652)
43 PF01925 TauE: Sulfite exporte 28.5 3.9E+02 0.0084 23.1 8.7 27 130-156 59-85 (240)
44 PF13940 Ldr_toxin: Toxin Ldr, 23.9 82 0.0018 19.3 2.1 19 281-299 15-33 (35)
45 PRK12446 undecaprenyldiphospho 21.3 22 0.00048 33.7 -1.0 21 110-130 7-27 (352)
46 PF09512 ThiW: Thiamine-precur 20.4 4.9E+02 0.011 21.7 6.8 26 134-159 123-148 (150)
No 1
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.7e-50 Score=358.45 Aligned_cols=225 Identities=35% Similarity=0.562 Sum_probs=187.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccc
Q 040654 52 DIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGI 131 (306)
Q Consensus 52 ~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 131 (306)
+..+.+.+|++++||++|++++|+++++.............+.+++.+|+.+++.+++++++||||+|||||+++++.|+
T Consensus 4 ~~~~~~~~~~~~aEF~~T~~~vf~g~~~~~~~~~~~~~~~l~~ial~~Gl~v~v~i~~~g~iSGaH~NPAVT~a~~~~~~ 83 (238)
T KOG0223|consen 4 ELLSVSFLRALIAEFLATFLFVFAGCGSVVVNPKYGGPVGLLGIALAFGLAVFVLVYSTGHISGAHFNPAVTLAFAVGGK 83 (238)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHHHHHhhhccccccccCHHHHHHHHHhCC
Confidence 34567899999999999999999988876555433333456789999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHH
Q 040654 132 TSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVW 211 (306)
Q Consensus 132 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~ 211 (306)
+++.+++.|+++|++|+++|+++.+.+.+.+.... +. .. +.+. .+.+..|+++.|++.||+|+++++.
T Consensus 84 isl~~~~~Y~vaQ~lGa~~g~~~l~~~~~~~~~~~---~~---~~--~~~~----~~~~~~q~~~~E~ilTf~Lv~~v~~ 151 (238)
T KOG0223|consen 84 ISLFRAVAYIVAQLLGAIAGAALLKVVTPGQYNRK---GL---GL--TGLA----PGLSTGQGLVIEIILTFILVFTVFA 151 (238)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHheecCcccccC---Cc---ce--eccC----CCCCcchhHHHHHHHHHHHhheeEE
Confidence 99999999999999999999999999988752211 11 11 1222 2678999999999999999999887
Q ss_pred HhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHH
Q 040654 212 MAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFA 291 (306)
Q Consensus 212 ~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~ 291 (306)
.++|+|+. ..+|+.||+.+.+.++ .++ ++||++|||||+|||+++.+ .|++|||||+||++|+++++
T Consensus 152 ~a~d~~~~-----~~a~l~IG~~v~~~~l----~~g--~~TG~sMNPArSfGpAvv~~--~w~~hwiYwvgP~~Ga~~a~ 218 (238)
T KOG0223|consen 152 TATDPRRS-----ELAPLAIGFSVGLNIL----AAG--PFTGASMNPARSFGPAVVYG--SWDDHWIYWVGPLLGAILAA 218 (238)
T ss_pred EeecCCCc-----ccHHHHHHHHHHHHHH----eec--CcCcCccCcHHHhhHHHHhc--CCCcEEEEEhhHHHHHHHHH
Confidence 68998886 3456666666665444 334 99999999999999999987 59999999999999999999
Q ss_pred HHHHHcccCc
Q 040654 292 LYTKLIPSQN 301 (306)
Q Consensus 292 l~~~~~~~~~ 301 (306)
++||++....
T Consensus 219 ~~y~~v~~~~ 228 (238)
T KOG0223|consen 219 LIYRLVFIPD 228 (238)
T ss_pred HHHHHhccCc
Confidence 9999886554
No 2
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.7e-50 Score=357.43 Aligned_cols=237 Identities=23% Similarity=0.334 Sum_probs=196.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeEEecccC-CCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccc
Q 040654 54 FSVKVWRASMAELLGTAVLVFALDTIVISSIQT-DTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGIT 132 (306)
Q Consensus 54 ~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~-~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~ 132 (306)
.++++.|++++||+||++|++++++++.....+ +..+++..+.++||+++++.+|+.+++||||+|||||+++++.||+
T Consensus 27 i~~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyvag~iSGgHlNPAVS~a~~~~g~~ 106 (316)
T KOG0224|consen 27 IRNELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYVAGRISGGHLNPAVSLAMCILGRL 106 (316)
T ss_pred HHHHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHhhccccccccCHHHHHHHHHhcCC
Confidence 367899999999999999999998887655443 4556788899999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhcc------CCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHH
Q 040654 133 SFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFS------LGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFL 206 (306)
Q Consensus 133 ~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~------~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~ 206 (306)
+|+|+++|+++|++||++|++.+|.+|++.+.+... ....+.++|+++|.+ .++++++|++|+++|.+|+
T Consensus 107 p~~k~p~Y~~aQ~iGAF~gaa~~y~~y~d~i~~f~Gg~~~vtgp~aTAgiFaTyP~p----~ls~~n~F~DqfigTa~L~ 182 (316)
T KOG0224|consen 107 PWKKFPVYVLAQFIGAFLGAATVYGLYYDAINEFDGGNRTVTGPKATAGIFATYPAP----HLSLWNGFFDQFIGTAMLV 182 (316)
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceEecCCccceEEEeecCch----HhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999887642 112467889999987 7999999999999999999
Q ss_pred HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHh-----CCCCC----Ccce
Q 040654 207 FASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVR-----GGHLW----DRHW 277 (306)
Q Consensus 207 ~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~-----g~~~~----~~~w 277 (306)
..+ +..+|+|+. ....+.|+++|+.+. .++.+++.|++| .+|||||||||+|+ |.+.+ .|.|
T Consensus 183 ~~l-~aI~D~rN~--~p~g~~p~~iG~lv~---~Ig~s~G~N~Gy---aiNPARDlgPRlF~~~aGyG~~vF~~~~~~~W 253 (316)
T KOG0224|consen 183 LCL-FAITDKRNP--IPTGLHPLVIGILVV---AIGMSLGYNTGY---AINPARDLGPRLFTSIAGYGPEVFSAGHNWWW 253 (316)
T ss_pred hhe-eEEecCCCC--CCcchhHHHHHHHHH---HHHHHhhcccCc---ccCcccccchHHHHHHHhcchhhcccCCceee
Confidence 865 567898883 344567777776654 335566655555 59999999999995 33222 4668
Q ss_pred ehhhhHHHHHHHHHHHHHHcccCcCC
Q 040654 278 VFWAGPAIACVAFALYTKLIPSQNLH 303 (306)
Q Consensus 278 vywv~P~iGa~~a~l~~~~~~~~~~~ 303 (306)
++|++|++|+++++++|++..-.|..
T Consensus 254 vPivgPl~Gai~G~~iY~~~Ig~h~~ 279 (316)
T KOG0224|consen 254 VPIVGPLIGAILGGWIYDFFIGFHIP 279 (316)
T ss_pred eeehhhhhhhhhhhhhheeeeeccCC
Confidence 89999999999999999988655544
No 3
>PLN00184 aquaporin NIP1; Provisional
Probab=100.00 E-value=4.7e-49 Score=361.25 Aligned_cols=225 Identities=27% Similarity=0.385 Sum_probs=178.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccc
Q 040654 55 SVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSF 134 (306)
Q Consensus 55 ~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 134 (306)
+.+++|++++||+|||+|+|++++++......+...+++.++++||+++++.+++++++||||+|||||+++++.++++|
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~~~~~~~iai~~Gl~v~~~i~~~g~iSGaH~NPAVTla~al~g~~~~ 129 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDNVVTLPGIAIVWGLTIMVLIYSLGHISGAHINPAVTIAFASCGRFPL 129 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccccHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHhCCCCH
Confidence 56789999999999999999988765433222222356788999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 040654 135 TRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAF 214 (306)
Q Consensus 135 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~ 214 (306)
.++++||++|++||++|+++++.+++...... .+. ....+.+.|. .+..++|+.|+++|++|+++++.+..
T Consensus 130 ~~~~~YiiaQllGA~lga~~~~~l~~~~~~~~--~~~-~~~~~~t~p~------~s~~~af~~E~i~TfvLv~~il~~~~ 200 (296)
T PLN00184 130 KQVPAYVISQVIGSTLAAATLRLLFGLDHDVC--SGK-HDVFIGSSPV------GSDLQAFVMEFIVTFYLMFIISGVAT 200 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchhhcc--ccc-cceeeccCcC------CcHHHHHHHHHHHHHHHHHHHHheec
Confidence 99999999999999999999999987543321 111 1111223332 37889999999999999998876545
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHH
Q 040654 215 DSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYT 294 (306)
Q Consensus 215 d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~ 294 (306)
|++... ...++.||+.+...++. .+ ++||++||||||||||++.+ .|+++||||+||++|+++++++|
T Consensus 201 ~~~~~~----~~~~l~IG~~v~~~~~~----~g--~~TG~smNPAR~~GPal~~~--~~~~~WVy~vgPilGa~laal~y 268 (296)
T PLN00184 201 DNRAIG----ELAGLAIGSTVLLNVLI----AA--PVSSASMNPGRSLGPAMVYG--CYKGIWIYIVAPTLGAIAGAWVY 268 (296)
T ss_pred cCcCCC----cchHHHHHHHHHHHHHH----hc--ccCccccCchhhHHHHHHhh--cccccchHHhHHHHHHHHHHHHH
Confidence 543221 23456666666554443 33 89999999999999999976 78999999999999999999999
Q ss_pred HHcccC
Q 040654 295 KLIPSQ 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
+++...
T Consensus 269 ~~l~~~ 274 (296)
T PLN00184 269 NTVRYT 274 (296)
T ss_pred HHHhcC
Confidence 988543
No 4
>PTZ00016 aquaglyceroporin; Provisional
Probab=100.00 E-value=7.2e-48 Score=354.28 Aligned_cols=232 Identities=24% Similarity=0.321 Sum_probs=181.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccccccc
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFT 135 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 135 (306)
++++|++++||+||++|+|+++++.......+...+.+.+++++|+++++.+++++++||||+|||||+++++.++++|.
T Consensus 47 ~~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~~~~ial~~Glav~~~i~~~g~iSG~h~NPAVTla~~l~g~i~~~ 126 (294)
T PTZ00016 47 RPNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGDYLAITIGWGLGVTFGLLVSAGISGGHLNPAVTLGNAVFGKFPWK 126 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCcHHHHHHHHHHHHHHHHHhcccCcCccCHHHHHHHHHhccCCHH
Confidence 67889999999999999998887654432222234466889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccC-------CcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTKKIAHNFSL-------GGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFA 208 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~ 208 (306)
+++.|+++|++|+++|++++|.++++.+.+.... .....+++++.| +.+..++|+.|+++|++|+++
T Consensus 127 ~~~~YiiaQ~lGa~~ga~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~t~p------~~s~~~a~~~E~i~T~iLv~~ 200 (294)
T PTZ00016 127 KLPGYFVAQLLGAFVGAACVYGLYYGFFKDHGIPELPWETMANGFAGVFATYP------REGNFYAIFSELILTAILLLV 200 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCcccccccccccccceeeCCC------CccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998865543110 011223455555 357899999999999999998
Q ss_pred HHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHh----CCCCCC----cceehh
Q 040654 209 SVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVR----GGHLWD----RHWVFW 280 (306)
Q Consensus 209 i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~----g~~~~~----~~wvyw 280 (306)
++. ..|+|+.... ...|+.||+.+....+. .+ ++||++||||||||||++. |...|+ |+||||
T Consensus 201 ila-~~d~~~~~~~--~~~pl~IGl~v~~i~~~----~g--~~TG~smNPAR~fGPal~~~~~~g~~~~~~~~~~~WVy~ 271 (294)
T PTZ00016 201 ILA-ITDPNNCPAF--NYLPVAVGLLVFVIGIS----FG--GNTGYALNPARDLGPRLFSAILWGSEVFTKDNYYFWVPL 271 (294)
T ss_pred HHH-hccCccCCCc--CcccHHHHHHHHHHHHh----cc--CCCCCcccchhhHHHHHHHHHhccccccCcCCceeeeee
Confidence 764 5676654322 23456666665433322 22 7899999999999999997 433454 689999
Q ss_pred hhHHHHHHHHHHHHHHcccCcC
Q 040654 281 AGPAIACVAFALYTKLIPSQNL 302 (306)
Q Consensus 281 v~P~iGa~~a~l~~~~~~~~~~ 302 (306)
+||++|+++++++||++...+.
T Consensus 272 vgP~vGa~~aally~~ll~~~~ 293 (294)
T PTZ00016 272 VAPFVGAVLGMFLYDKFIPPLI 293 (294)
T ss_pred hHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998865543
No 5
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.3e-47 Score=335.15 Aligned_cols=226 Identities=26% Similarity=0.327 Sum_probs=185.7
Q ss_pred HHHHHHHHHHHHHHHHHhhheeEEecccCC---CCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccc
Q 040654 58 VWRASMAELLGTAVLVFALDTIVISSIQTD---TKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSF 134 (306)
Q Consensus 58 ~~r~~~aEfigT~~lv~~~~~~~~~~~~~~---~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 134 (306)
..|++++||+||++|++.++++++.....+ ....+..++++||+++++.+|+++++||+|+|||||+++++.|+++|
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g~iSGaHlNPAVTi~la~~g~fp~ 83 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFGGISGAHLNPAVTIALAVRGRFPW 83 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhccCcCccccChHHHHHHHHhCCCCH
Confidence 467889999999999999988875544322 34567789999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 040654 135 TRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAF 214 (306)
Q Consensus 135 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~ 214 (306)
++++.||++|++||++|+.++|.+++++..+........+..+++.|.. .+..++|+.|+++||+|+++++....
T Consensus 84 ~~v~~YivAQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~t~p~~-----~~~~~~fl~E~v~T~~L~~~Ila~~~ 158 (241)
T COG0580 84 RKVLPYIVAQVLGAFAGAALLYLLYYGKILETEGDPLASLGAFSTSPGG-----YSLGQAFLIEFVGTFVLVLGILALTD 158 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhcCCchhhccccccCCCc-----ccHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999998887643233456778888875 48899999999999999999876554
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHh---CC-C---CCCcceehhhhHHHHH
Q 040654 215 DSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVR---GG-H---LWDRHWVFWAGPAIAC 287 (306)
Q Consensus 215 d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~---g~-~---~~~~~wvywv~P~iGa 287 (306)
|++. +....|+.||+.+..+.+.. + +.||.++|||||||||++. +. . ++.|.|+||++|++|+
T Consensus 159 ~~~~----~~~~apl~iGllv~~i~~s~----g--~~TG~aiNPARdlGprl~~~~~g~~~~~g~~~y~wipvigpiiGa 228 (241)
T COG0580 159 DGNA----NAGFAPLAIGLLVTAIGLSL----G--PTTGTAINPARDLGPRLAHSLAGWAANKGDSSYFWIPVIGPIVGA 228 (241)
T ss_pred cCcc----cccchHHHHHHHHHHHHHHh----c--CCCCCccChHHHHHHHHHHHhcCcccCCCCCCeEeeeehHHHHHH
Confidence 4433 22256777887776543332 2 7889999999999999954 31 1 2258999999999999
Q ss_pred HHHHHHHHHcc
Q 040654 288 VAFALYTKLIP 298 (306)
Q Consensus 288 ~~a~l~~~~~~ 298 (306)
++++++||.+.
T Consensus 229 ~lg~~~~~~~~ 239 (241)
T COG0580 229 ILGALLYKLLL 239 (241)
T ss_pred HHHHHHHHHHc
Confidence 99999999654
No 6
>PLN00182 putative aquaporin NIP4; Provisional
Probab=100.00 E-value=1.1e-45 Score=337.04 Aligned_cols=215 Identities=28% Similarity=0.422 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccccccc
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFT 135 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 135 (306)
.+++|++++||+|||+|+|++++++......+.....+.+++++|+++++.+++++++||||+|||||+++++.++++|.
T Consensus 39 ~~~~~~~~aEflgTflLvf~g~g~~~~~~~~~~~~~~~~iala~Gl~v~~~i~~~g~iSGah~NPAVTla~~~~~~~~~~ 118 (283)
T PLN00182 39 VCLTQKLIAEMIGTYFIIFSGCGVVVVNVLYGGTITFPGICVTWGLIVMVMIYSTGHISGAHFNPAVTVTFAIFRRFPWY 118 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHHhcCCCccccCHHHHHHHHHHcCCCHH
Confidence 45789999999999999998887654332221223456788999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFD 215 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~d 215 (306)
++++||++|++|+++|+++++.+++... . ..+.+.|. .+..++++.|+++|++|+++++....|
T Consensus 119 ~~~~Yi~aQ~lGa~~ga~~~~~~~~~~~------~----~~~~~~p~------~s~~~a~~~E~l~TfiLv~~i~~~~~~ 182 (283)
T PLN00182 119 QVPLYIGAQLTGSLLASLTLRLMFNVTP------E----AFFGTTPT------DSSGQALVAEIIISFLLMFVISGVATD 182 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc------c----ceeeCCCC------cchHHHHHHHHHHHHHHHHHHHhheec
Confidence 9999999999999999999999885321 1 12333443 467899999999999999887655445
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHHH
Q 040654 216 SRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTK 295 (306)
Q Consensus 216 ~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~~ 295 (306)
++.. + ...++.+|+.+. +.....+ ++||++|||||+|||+++.+ .|+++|+||++|++|+++++++|+
T Consensus 183 ~~~~---~-~~~~l~iGl~V~----~~~~~~g--~~SGa~lNPARt~gpal~~~--~~~~~wvY~vap~lGA~lgally~ 250 (283)
T PLN00182 183 SRAV---G-ELAGIAVGMTII----LNVFVAG--PISGASMNPARSLGPAIVMG--RYKGIWVYIVGPFVGIIAGGFVYN 250 (283)
T ss_pred cccC---C-cchhHHHHHHHH----HHHHHcc--ccCccccChHHHHHHHHHhc--cccceeHHHHHHHHHHHHHHHHHH
Confidence 4321 1 123455555554 4433333 89999999999999999975 699999999999999999999999
Q ss_pred Hcc
Q 040654 296 LIP 298 (306)
Q Consensus 296 ~~~ 298 (306)
++.
T Consensus 251 ~l~ 253 (283)
T PLN00182 251 LIR 253 (283)
T ss_pred HHh
Confidence 875
No 7
>PRK05420 aquaporin Z; Provisional
Probab=100.00 E-value=7.3e-46 Score=330.84 Aligned_cols=226 Identities=27% Similarity=0.365 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEecc-cCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccch
Q 040654 59 WRASMAELLGTAVLVFALDTIVISSI-QTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRA 137 (306)
Q Consensus 59 ~r~~~aEfigT~~lv~~~~~~~~~~~-~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~ 137 (306)
+|++++||+||++|+|++++++.... .++...+.+.+++++|+++++.+++++++||+|+|||||+++++.|+++|.++
T Consensus 2 ~~~~laEfigT~~lv~~g~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSG~h~NPAvtl~~~~~~~i~~~~~ 81 (231)
T PRK05420 2 FKKLAAEFFGTFWLVFGGCGSAVLAAAFPELGIGFLGVALAFGLTVLTMAYAVGHISGGHFNPAVSVGLWAGGRFPAKEL 81 (231)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHhhcccCCCCCchHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHhCCCCHHHh
Confidence 68999999999999998877543221 11112245678999999999999999999999999999999999999999999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHhhhhhhhccC-CcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 040654 138 AIYILAQCVGGIFGALALEAVVTKKIAHNFSL-GGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDS 216 (306)
Q Consensus 138 ~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~-g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~d~ 216 (306)
+.|+++|++|+++|+++++.++++........ +.++.+...+.|. +.+..++++.|+++|++|+++++. ..|+
T Consensus 82 ~~Y~~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~E~v~T~iLv~~i~~-~~~~ 155 (231)
T PRK05420 82 VPYIIAQVVGGIAAAAVLYLIASGKAGFDLAGSGFASNGYGEHSPG-----GYSLLAALVCEVVLTAFFLLVILG-ATDK 155 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCccccccccccccccccccCCCC-----cccHHHHHHHHHHHHHHHHHHHHH-HhCC
Confidence 99999999999999999998886532111000 0011111112232 357899999999999999998764 5665
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHHHH
Q 040654 217 RQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTKL 296 (306)
Q Consensus 217 ~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~~~ 296 (306)
|+.+ ...|+.+|+.+....+.. + ++||++||||||||||+++++..|+++|+||++|++|+++++++||+
T Consensus 156 ~~~~----~~~p~~iGl~v~~~~~~~----~--~~TG~s~NPAR~~gpal~~g~~~~~~~wvy~vgP~~Ga~laa~~y~~ 225 (231)
T PRK05420 156 RAPA----GFAPIAIGLALTLIHLIS----I--PVTNTSVNPARSTGVALFVGGWALEQLWLFWVAPIVGAIIGGLIYRL 225 (231)
T ss_pred CCCC----cchHHHHHHHHHHHHHHh----h--ccCCCccCcHHHHHHHHHhCCCCccceEEeehHHHHHHHHHHHHHHH
Confidence 5422 245677777666554433 3 89999999999999999987444568999999999999999999998
Q ss_pred cccC
Q 040654 297 IPSQ 300 (306)
Q Consensus 297 ~~~~ 300 (306)
+..+
T Consensus 226 l~~~ 229 (231)
T PRK05420 226 LLEK 229 (231)
T ss_pred Hhcc
Confidence 8543
No 8
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=100.00 E-value=1.9e-46 Score=334.69 Aligned_cols=221 Identities=35% Similarity=0.585 Sum_probs=176.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheeEEecccCC-C-----CCCchHHHHHHHHHHHHHHHHhccccccccChHHHHH
Q 040654 52 DIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTD-T-----KTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFA 125 (306)
Q Consensus 52 ~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~-~-----~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla 125 (306)
|+++.+++|++++||+||++++|.++++........ + ..+...+++.+|+++++.+++++++||||+|||||++
T Consensus 1 ~~~~~~~~r~~~aEfigT~~lvf~~~~~~~~~~~~~~~~~~~~~~~~~~ial~~g~~~~~~i~~~~~iSGaH~NPaVTla 80 (227)
T PF00230_consen 1 ELKSPSLWRKFLAEFIGTFLLVFFGCGSVAALNGSTSSSGSDVSGGWLQIALAWGLALAALIYAFGPISGAHFNPAVTLA 80 (227)
T ss_dssp GCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSTTSTTSSHHHHHHHHHHHHHHHHHHHHHHHHHTSS-SHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccHHHHHHHHHHhhhhhhhhhhhccccccccchhhh
Confidence 566889999999999999999998876543221111 1 1245678999999999999999999999999999999
Q ss_pred HHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHH
Q 040654 126 AALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVF 205 (306)
Q Consensus 126 ~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L 205 (306)
.++.|+++|.+++.|+++|++|+++|+++++.++++..... . . +++.|.. +.+..++++.|+++|++|
T Consensus 81 ~~l~g~~~~~~~~~Yi~aQ~lGa~~g~~l~~~~~~~~~~~~-~-~------~~~~~~~----~~s~~~~~~~E~~~t~il 148 (227)
T PF00230_consen 81 FALTGRISWKKAIVYIIAQFLGAFLGALLVYALYPDSNSAA-G-I------FATTPPP----GISLGQAFFSEFIGTFIL 148 (227)
T ss_dssp HHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHSTHHHTCT-T-T------TSCGSTT----TSSHHHHHHHHHHHHHHH
T ss_pred eeeeeeecccceeeEEeeccccccccccchhhcccCccccc-c-c------ccccccc----cchhhhhhhhhhhhhhHH
Confidence 99999999999999999999999999999999998862211 0 1 1223333 578999999999999999
Q ss_pred HHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHH
Q 040654 206 LFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAI 285 (306)
Q Consensus 206 ~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~i 285 (306)
+++++... |+++....+ .+.|+.||+.+++..+... ++||++|||||||||+++.+ .|+++||||++|++
T Consensus 149 ~~~i~~~~-~~~~~~~~~-~~~p~~ig~~v~~~~~~~~------~~tG~~~NPAr~~g~~l~~~--~~~~~wvy~~~P~~ 218 (227)
T PF00230_consen 149 VLVILAVA-DDKRKFPLG-PLAPLAIGLTVGALVLAGG------PYTGASLNPARALGPALFSG--IWDYFWVYWVGPFI 218 (227)
T ss_dssp HHHHHHHT-STTSSSTSS-GGHHHHHHHHHHHHHHHHH------HHHST-SSHHHHHHHHHHHT--HHTTTTHHHHHHHH
T ss_pred Hhhhhhhc-ccccccccc-cccceeEEEEEeecccccc------cccccccCchhhcCceeecc--cCCeEEEEEehHHH
Confidence 99887554 444433323 2567788888877666543 67789999999999999987 59999999999999
Q ss_pred HHHHHHHHH
Q 040654 286 ACVAFALYT 294 (306)
Q Consensus 286 Ga~~a~l~~ 294 (306)
|+++++++|
T Consensus 219 Ga~~a~~~Y 227 (227)
T PF00230_consen 219 GAILAALLY 227 (227)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhC
Confidence 999999987
No 9
>PLN00026 aquaporin NIP; Provisional
Probab=100.00 E-value=2.7e-45 Score=335.74 Aligned_cols=218 Identities=28% Similarity=0.415 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccccccc
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFT 135 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 135 (306)
.+++|++++||+|||+|+|++++........+.....+.+++++|+++++.+++++++||||+|||||+++++.++++|.
T Consensus 68 ~~~~r~~laEfiGTflLvf~g~~~~~~~~~~~~~~~~~~ial~~GlaV~~~i~~~g~ISGaHlNPAVTla~al~g~~~~~ 147 (298)
T PLN00026 68 VSLTRKLGAEFVGTFILIFAATAGPIVNQKYDGAETLIGNAACAGLAVMIVILSTGHISGAHLNPSLTIAFAALRHFPWK 147 (298)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHHHHHHHHHhCCCcHH
Confidence 45789999999999999998875433221111123466788999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhc
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFD 215 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~d 215 (306)
++++||++|++|+++|+++++.++++... ++. +.| +++..++++.|+++|++|+++++.+..|
T Consensus 148 ~~~~YiiaQilGAi~aa~~~~~~~~~~~~-----~g~------t~p------~~s~~~a~~~Efi~TfiLv~vi~~v~~~ 210 (298)
T PLN00026 148 HVPAYIAAQVSASICASFALKGVFHPFMS-----GGV------TVP------SVSTGQAFALEFIITFNLLFVVTAVATD 210 (298)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccc-----Cce------eee------cccHHHHHHHHHHHHHHHHHhheeeecC
Confidence 99999999999999999999999875321 221 123 3578899999999999999987755455
Q ss_pred ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHHH
Q 040654 216 SRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYTK 295 (306)
Q Consensus 216 ~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~~ 295 (306)
+++.. . ..++.+|+.+.+.++ ..+ ++||++|||||||||+++.+ +|+++|+||++|++|+++++++|+
T Consensus 211 ~~~~~---~-~~~l~iGl~V~~~~l----~~g--~~TGa~mNPARtlgPal~~~--~~~~~wVy~vaPilGAilga~ly~ 278 (298)
T PLN00026 211 TRAVG---E-LAGIAVGATVMLNIL----VAG--PSTGGSMNPVRTLGPAVAAG--NYRAIWIYLVAPTLGALAGAGTYT 278 (298)
T ss_pred CCCcC---C-ccchHHHHHHHHHHH----Hhc--ccCccccChHHHHHHHHhcC--CchheeHHHHHHHHHHHHHHHHHH
Confidence 44321 1 234555555554443 333 78999999999999999965 799999999999999999999999
Q ss_pred HcccCcC
Q 040654 296 LIPSQNL 302 (306)
Q Consensus 296 ~~~~~~~ 302 (306)
++.....
T Consensus 279 ~~~~~~~ 285 (298)
T PLN00026 279 AVKLREE 285 (298)
T ss_pred HHhCccc
Confidence 9854443
No 10
>PLN00166 aquaporin TIP2; Provisional
Probab=100.00 E-value=1.4e-44 Score=325.66 Aligned_cols=219 Identities=28% Similarity=0.488 Sum_probs=173.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeEEec-ccC-C---CCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHH
Q 040654 54 FSVKVWRASMAELLGTAVLVFALDTIVISS-IQT-D---TKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAAL 128 (306)
Q Consensus 54 ~~~~~~r~~~aEfigT~~lv~~~~~~~~~~-~~~-~---~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l 128 (306)
++.+.+|++++||+|||+|+|.++++.... ... + .....+.+++++|+.+++.+++++++||+|+|||||+++++
T Consensus 13 ~~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~~~ial~~Gl~v~~~i~~~g~iSGah~NPAvt~~~~l 92 (250)
T PLN00166 13 FSVASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDPAGLVAVAVAHAFALFVGVSIAANISGGHLNPAVTLGLAI 92 (250)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCCCccHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHH
Confidence 346678999999999999999888765431 111 1 12245678999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 040654 129 TGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFA 208 (306)
Q Consensus 129 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~ 208 (306)
.++++|.++++|+++|++|+++|+.+++.+++++.. . .. +. ..+.+..++++.|+++|++|+++
T Consensus 93 ~g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~~~~~-----~--~~-----~~----~~~~~~~~~~~~E~v~Tf~Lv~~ 156 (250)
T PLN00166 93 GGNITIITGFFYWIAQCLGSIVACLLLVFVTNGESV-----P--TH-----GV----AAGLGAIEGVVMEIVVTFALVYT 156 (250)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC-----c--cc-----cc----CCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888653211 0 00 11 11467899999999999999998
Q ss_pred HHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHH
Q 040654 209 SVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACV 288 (306)
Q Consensus 209 i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~ 288 (306)
++....|+|+.. . ....|+.||+.+....+. ++ ++||++||||||||||++.+ .|+++||||++|++|++
T Consensus 157 i~~~~~~~~~~~-~-~~~~p~~iGl~v~~~~~~----~~--~~tG~~~NPAR~~gPal~~~--~~~~~wvywvgPi~Ga~ 226 (250)
T PLN00166 157 VYATAADPKKGS-L-GTIAPIAIGFIVGANILA----AG--PFSGGSMNPARSFGPAVVSG--DFSQIWIYWVGPLVGGA 226 (250)
T ss_pred HHHhcccccccc-c-ccchhHHHHHHHHHHHHc----cc--CCCCCccCchHhhHHHHhcC--CCcccchhhHHHHHHHH
Confidence 876655544321 1 224566677666544433 23 89999999999999999986 69999999999999999
Q ss_pred HHHHHHHHcc
Q 040654 289 AFALYTKLIP 298 (306)
Q Consensus 289 ~a~l~~~~~~ 298 (306)
+++++||.+.
T Consensus 227 ~aa~~y~~l~ 236 (250)
T PLN00166 227 LAGLIYGDVF 236 (250)
T ss_pred HHHHHHHHHh
Confidence 9999998773
No 11
>PLN00027 aquaporin TIP; Provisional
Probab=100.00 E-value=1.2e-44 Score=327.02 Aligned_cols=219 Identities=28% Similarity=0.471 Sum_probs=174.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeEEec-c-c-C--CCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHc
Q 040654 55 SVKVWRASMAELLGTAVLVFALDTIVISS-I-Q-T--DTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALT 129 (306)
Q Consensus 55 ~~~~~r~~~aEfigT~~lv~~~~~~~~~~-~-~-~--~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~ 129 (306)
.++.+|++++||+||++|+|.++++.+.. . . . ....+.+.+++++|+++++.+++++++||+|+|||+|+++++.
T Consensus 16 ~~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~~iSGah~NPAvtl~~~~~ 95 (252)
T PLN00027 16 HPDALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGANISGGHVNPAVTFGAFIG 95 (252)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHcccCccccChHHHHHHHHh
Confidence 35678999999999999999887764321 1 1 1 1123456789999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 040654 130 GITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFAS 209 (306)
Q Consensus 130 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i 209 (306)
|+++|.++++|+++|++|+++|+.+++.+.++.. ...+.+.| +.+..++++.|+++||+|++++
T Consensus 96 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~----------~~~~~~~~------~~~~~~~~~~E~i~Tf~Lv~~i 159 (252)
T PLN00027 96 GNITLLRGILYWIAQLLGSVVACLLLKFSTGGLE----------TSAFSLSS------GVGVWNAFVFEIVMTFGLVYTV 159 (252)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc----------cccccCCC------CccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999887654311 12223333 4678999999999999999998
Q ss_pred HHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHH
Q 040654 210 VWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVA 289 (306)
Q Consensus 210 ~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~ 289 (306)
+....|+++.. . ....|+.+|+.+...++. ++ ++||++||||||||||++.+ .|+++||||+||++|+++
T Consensus 160 ~~~~~~~~~~~-~-~~~~p~~iGl~v~~~~~~----~g--~~TG~~~NPAR~~gPal~~~--~~~~~wvy~vgP~~Ga~l 229 (252)
T PLN00027 160 YATAVDPKKGD-L-GIIAPIAIGFIVGANILA----GG--AFDGASMNPAVSFGPAVVSW--TWTNHWVYWAGPLIGGGI 229 (252)
T ss_pred HHhccccccCC-c-cchHHHHHHHHHHHHHHh----cc--cccccccCcchhHHHHHHhh--cchhhhHHHHHHHHHHHH
Confidence 76666665422 1 224566677766544443 23 89999999999999999986 699999999999999999
Q ss_pred HHHHHHHccc
Q 040654 290 FALYTKLIPS 299 (306)
Q Consensus 290 a~l~~~~~~~ 299 (306)
++++|+++..
T Consensus 230 aa~~y~~l~~ 239 (252)
T PLN00027 230 AGLVYELIFI 239 (252)
T ss_pred HHHHHHHHhc
Confidence 9999999853
No 12
>PLN00167 aquaporin TIP5; Provisional
Probab=100.00 E-value=8.8e-44 Score=321.24 Aligned_cols=221 Identities=24% Similarity=0.349 Sum_probs=173.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeEEeccc--CC---CCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHc
Q 040654 55 SVKVWRASMAELLGTAVLVFALDTIVISSIQ--TD---TKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALT 129 (306)
Q Consensus 55 ~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~--~~---~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~ 129 (306)
.++++|++++||+|||+|+|+++++...... .+ ....++.+++++|+++++.+++++++||+|+|||||++.++.
T Consensus 18 ~~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g~iSGah~NPAvtl~~~~~ 97 (256)
T PLN00167 18 TRNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAANISGGHVNPAVTFGMAVG 97 (256)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhhcccccccCHHHHHHHHHh
Confidence 4668899999999999999988776543211 11 123467899999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHH
Q 040654 130 GITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFAS 209 (306)
Q Consensus 130 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i 209 (306)
|+++|.+++.|+++|++|+++|+.+++.++++... ... .. ..+.+..++++.|+++|++|++++
T Consensus 98 g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~-----~~~-------~~----~~~~s~~~~~~~E~i~T~~L~~~i 161 (256)
T PLN00167 98 GHISVPTAMFYWISQMLASVMACLFLKVTTVGQHV-----PTY-------KI----AEEMTGFGASVLEGVLTFGLVYTV 161 (256)
T ss_pred CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhccccc-----ccc-------cc----CcccchHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999887654211 000 00 113567889999999999999987
Q ss_pred HHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHH
Q 040654 210 VWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVA 289 (306)
Q Consensus 210 ~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~ 289 (306)
+. ..|+++... +...|+.+|+.+....+. .+ ++||++||||||||||++.+ .|+++|+||+||++|+++
T Consensus 162 ~~-~~~~~~~~~--~~~~pl~iGl~v~~~~~~----~g--~~TG~a~NPAR~~gPal~~~--~~~~~wvywvgP~~Ga~l 230 (256)
T PLN00167 162 YA-AGDPRRGLL--GAIGPLAIGLVAGANVLA----AG--PFSGGSMNPACAFGSAVVAG--SFKNQAVYWVGPLLGGAV 230 (256)
T ss_pred HH-hccccccCC--CCcchHHHHHHHHHHHHh----cc--CCCCcccCcccchHHHHhcc--CccCcEEEeHHHHHHHHH
Confidence 64 456554321 123466666666544433 23 89999999999999999976 699999999999999999
Q ss_pred HHHHHHHcccCcC
Q 040654 290 FALYTKLIPSQNL 302 (306)
Q Consensus 290 a~l~~~~~~~~~~ 302 (306)
++++|+++..+..
T Consensus 231 ~a~~y~~l~~~~~ 243 (256)
T PLN00167 231 AGLLYDNVVFPTQ 243 (256)
T ss_pred HHHHHHHHhCCCc
Confidence 9999998865443
No 13
>PLN00183 putative aquaporin NIP7; Provisional
Probab=100.00 E-value=4.6e-43 Score=318.74 Aligned_cols=230 Identities=27% Similarity=0.467 Sum_probs=180.3
Q ss_pred cchhcc-ccccchhHHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChH
Q 040654 43 TWKKIL-GFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPL 121 (306)
Q Consensus 43 ~~~~~~-~~~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPa 121 (306)
+.++.. +++...+.+.+|++++||++||+++|+++++...........+.+.+++.+|+.+++.+++++++||+|+|||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~laEfigTfllvf~~~g~~~~~~~~~~~~~~~~~al~~Gl~V~~~i~~~g~vSGah~NPA 107 (274)
T PLN00183 28 KRQRLFGCLPYDMDLNPARMVLAEMVGTFILMFCVCGIIASTQLSGGEVGLLEYAATAGLTVVVVVFSIGSISGAHVNPS 107 (274)
T ss_pred hhhhhccccCCcCChHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccchHHHHHHHHHHHHHHHHHhhccCccccCHH
Confidence 334443 4666778889999999999999999988776544322222234566889999999999999999999999999
Q ss_pred HHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHH
Q 040654 122 VSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIIC 201 (306)
Q Consensus 122 vTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~ 201 (306)
||+++++.++++|.++++||++|++|+++|+++++.+++... .++.+.|. .+..++++.|+++
T Consensus 108 vTla~~l~g~i~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~-----------~~~~~~p~------~~~~~~~~~E~v~ 170 (274)
T PLN00183 108 VTIAFATFGHFPWSKVPLYITAQTVGSVLATYVGVSVYGVKA-----------DLMTTKPA------QGCSSAFWVEFIA 170 (274)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----------ccccCCCc------ccHHHHHHHHHHH
Confidence 999999999999999999999999999999999988886421 11223342 3568999999999
Q ss_pred HHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhh
Q 040654 202 SFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWA 281 (306)
Q Consensus 202 T~~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv 281 (306)
|++|+++++.. .++++... ...++.+|+.+...+++. + ++||++|||||+|+|+++.+ .|+++|+||+
T Consensus 171 T~iLv~~i~~~-~~~~~~~~---~~~~l~iGl~v~~~v~~~----g--~~TG~~~NPArtlgpai~~~--~~~~~wvy~v 238 (274)
T PLN00183 171 TFIVMFLAASL-TSQPQSLG---HLSGFVIGIAIGLAVLIT----G--PVSGGSMNPARSLGPAIVSW--DFKDIWIYIT 238 (274)
T ss_pred HHHHHHhhhee-eccccCCC---CceehHHHHHHHHHHHhc----c--CCCCCEeCHHHHHHHHHhCC--ChhheehHHH
Confidence 99999887654 34332211 123556666666555433 3 88999999999999999964 7999999999
Q ss_pred hHHHHHHHHHHHHHHcccCc
Q 040654 282 GPAIACVAFALYTKLIPSQN 301 (306)
Q Consensus 282 ~P~iGa~~a~l~~~~~~~~~ 301 (306)
+|++|+++++++||++..+.
T Consensus 239 apilGailaa~l~~~l~~~~ 258 (274)
T PLN00183 239 APTIGAVAGALMFHLLRLRT 258 (274)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 99999999999999986543
No 14
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=100.00 E-value=6.8e-42 Score=305.62 Aligned_cols=226 Identities=30% Similarity=0.440 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHHHHHhhheeEEecccCC-CCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccchh
Q 040654 60 RASMAELLGTAVLVFALDTIVISSIQTD-TKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAA 138 (306)
Q Consensus 60 r~~~aEfigT~~lv~~~~~~~~~~~~~~-~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 138 (306)
|++++||+||++++|.++++......++ ...+.+.+++++|+.+.+.+++++++||+|+|||+|+++++.++++|.+.+
T Consensus 1 r~~~~E~~gT~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~v~~~~~~~~~~sga~~NPa~t~~~~~~~~~~~~~~~ 80 (228)
T cd00333 1 RKYLAEFLGTFLLVFFGCGSVLAVKLAGGASGGLLGIALAWGFAIFVLVYAVGHISGGHINPAVTLALAVGGRFPLIRVI 80 (228)
T ss_pred ChhhHHHHHHHHHHHHHhHHHhhccccCCCCCcHHHHHHHHHHHHHHHHHHhccCCCCeEcHHHHHHHHHhCCCCHHHHH
Confidence 5789999999999998887765433222 123456789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040654 139 IYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQ 218 (306)
Q Consensus 139 ~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~d~~~ 218 (306)
+|+++|++|+++|+.+++.++++++.+.........+.+++.|.. +.+..++++.|+++|++|+++++.. .++++
T Consensus 81 ~y~~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~E~v~T~~Lv~~i~~~-~~~~~ 155 (228)
T cd00333 81 PYIIAQLLGAILGAALLYGLYYGLYLEFLGANNIVAGIFGTYPSP----GVSNGNAFFVEFIGTFILVLVVFAT-TDDPN 155 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcCCccccccceeccCCCC----CccHHHHHHHHHHHHHHHHHHHHHH-ccccc
Confidence 999999999999999999999987765432111111234455554 5788999999999999999987754 44443
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCC-CCCCcceehhhhHHHHHHHHHHHHHHc
Q 040654 219 AKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGG-HLWDRHWVFWAGPAIACVAFALYTKLI 297 (306)
Q Consensus 219 ~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~-~~~~~~wvywv~P~iGa~~a~l~~~~~ 297 (306)
.. ......++.+|+.+...++.. + ++||+++||||||+|+++.+. ..|+++|+||++|++|+++++++||++
T Consensus 156 ~~-~~~~~~~~~iGl~v~~~~~~~----g--~~sG~~~NPAr~~g~~i~~~~~~~~~~~~vy~vap~lGai~aa~l~~~~ 228 (228)
T cd00333 156 GP-PPGGLAPLAIGLLVAAIGLAG----G--PITGASMNPARSLGPALFTGLARHWHYFWVYWVGPLIGAIAGALVYDYV 228 (228)
T ss_pred cC-CCCCcHHHHHHHHHHHHHHHh----h--cccccccCHhhchHHHHHhccccccceeehhhhHHHHHHHHHHHHHHhC
Confidence 21 122234566666665554433 3 789999999999999999753 259999999999999999999999874
No 15
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=100.00 E-value=3.8e-39 Score=285.67 Aligned_cols=211 Identities=30% Similarity=0.455 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHhhheeEEecccC---CCCC--CchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccchh
Q 040654 64 AELLGTAVLVFALDTIVISSIQT---DTKT--PNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAA 138 (306)
Q Consensus 64 aEfigT~~lv~~~~~~~~~~~~~---~~~~--~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 138 (306)
+||+||++++|.++++....... +... ....+++++|+.+++.+++++++||+|+|||||+++++.++++|.+++
T Consensus 1 aEf~gT~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~Gl~v~~~~~~~~~~sg~h~NPavt~~~~l~~~~~~~~~~ 80 (216)
T TIGR00861 1 AEFLGTFLLVFFGVGSALGVNVAGAYGAVGGGQFLGVALAFGLAVATLVYCVGGISGAHLNPAVTIALLLGRRFPLKRVP 80 (216)
T ss_pred CcHHHHHHHHHHHHHHHHhhhcccccCCCCCcchHHHHHHHHHHHHHHHHHHhcccccccCHHHHHHHHHhCCCCHHHHH
Confidence 59999999999887765442211 1111 466789999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccc
Q 040654 139 IYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQ 218 (306)
Q Consensus 139 ~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~d~~~ 218 (306)
+|+++|++|+++|+.+++.++++...... .. ...+. .+.+..++++.|+++|++|+++++. ..++++
T Consensus 81 ~y~~aQ~~Ga~~~~~~~~~~~~~~~~~~~--~~------~~~~~----~~~~~~~~~~~E~i~T~~lv~~~~~-~~~~~~ 147 (216)
T TIGR00861 81 VYIVAQLIGAILGAALLYGLTSGLFPGNL--AV------NGSGA----AGVSSGQAFFVEFIGTAILVLVIFA-TTDPRN 147 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccCCc--cc------cCCCC----CcccHHHHHHHHHHHHHHHHHHHhe-eecCCC
Confidence 99999999999999999998887542211 10 01111 1468899999999999999998764 344433
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHH
Q 040654 219 AKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYT 294 (306)
Q Consensus 219 ~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~ 294 (306)
... .....++.+|+.+... ....+ ++||+++||||||+|+++++...|+++|+||++|++|+++++++|
T Consensus 148 ~~~-~~~~~~~~iG~~v~~~----~~~~g--~~sG~~~NPAr~l~~~l~~~~~~~~~~~vy~vap~~Ga~~a~~~y 216 (216)
T TIGR00861 148 RVP-RGGFAPLAIGLLVFLI----HLSMG--PYTGTGMNPARSLGPALFAGLAGWGNHWVYWVGPIIGAILGALVY 216 (216)
T ss_pred CCC-CCccHHHHHHHHHHHH----HHhCC--CCcccccCchhhhhHHHHhccccccceeHHHHHHHHHHHHHHHhC
Confidence 221 2223455555555443 33333 899999999999999999765579999999999999999998875
No 16
>PLN00182 putative aquaporin NIP4; Provisional
Probab=99.59 E-value=5.7e-15 Score=135.25 Aligned_cols=98 Identities=22% Similarity=0.310 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++++++|+++|++|+|+++++....+ ... ...++++|+.+++.+++.+++||+|+|||+|+++++.++ .|.+
T Consensus 157 s~~~a~~~E~l~TfiLv~~i~~~~~~~~---~~~--~~~~l~iGl~V~~~~~~~g~~SGa~lNPARt~gpal~~~-~~~~ 230 (283)
T PLN00182 157 SSGQALVAEIIISFLLMFVISGVATDSR---AVG--ELAGIAVGMTIILNVFVAGPISGASMNPARSLGPAIVMG-RYKG 230 (283)
T ss_pred chHHHHHHHHHHHHHHHHHHHhheeccc---cCC--cchhHHHHHHHHHHHHHccccCccccChHHHHHHHHHhc-cccc
Confidence 3578999999999999998776533221 111 236789999999999999999999999999999999865 5889
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVT 160 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~ 160 (306)
.|+||++|++|+++|+++++.+..
T Consensus 231 ~wvY~vap~lGA~lgally~~l~~ 254 (283)
T PLN00182 231 IWVYIVGPFVGIIAGGFVYNLIRF 254 (283)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999888763
No 17
>cd00333 MIP Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal cytosolic portion followed by six transmembrane helices, which might have arisen through gene duplication. On the basis of sequence similarity and functional characteristics, the superfamily can be subdivided into two major groups: water-selective channels called aquaporins (AQPs) and glycerol uptake facilitators (GlpFs). AQPs are found in all three kingdoms of life, while GlpFs have been characterized only within microorganisms.
Probab=99.55 E-value=1e-14 Score=130.38 Aligned_cols=99 Identities=23% Similarity=0.313 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccc--c
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGIT--S 133 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~--~ 133 (306)
.+.+|.++.|+++|++|++.........+. ..+....++.+|+.+.+++++.+++||+|+|||+++++++.++. +
T Consensus 127 ~~~~~~~~~E~v~T~~Lv~~i~~~~~~~~~---~~~~~~~~~~iGl~v~~~~~~~g~~sG~~~NPAr~~g~~i~~~~~~~ 203 (228)
T cd00333 127 VSNGNAFFVEFIGTFILVLVVFATTDDPNG---PPPGGLAPLAIGLLVAAIGLAGGPITGASMNPARSLGPALFTGLARH 203 (228)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHcccccc---CCCCCcHHHHHHHHHHHHHHHhhcccccccCHhhchHHHHHhccccc
Confidence 357899999999999999977655322111 11234578899999999999999999999999999999999998 7
Q ss_pred ccchhHHHHHHhhHHHHHHHHHHH
Q 040654 134 FTRAAIYILAQCVGGIFGALALEA 157 (306)
Q Consensus 134 ~~~~~~yi~aQ~lGa~~ga~~~~~ 157 (306)
|.+.++||++|++|+++|+++.+.
T Consensus 204 ~~~~~vy~vap~lGai~aa~l~~~ 227 (228)
T cd00333 204 WHYFWVYWVGPLIGAIAGALVYDY 227 (228)
T ss_pred cceeehhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999987653
No 18
>PLN00026 aquaporin NIP; Provisional
Probab=99.54 E-value=2.8e-14 Score=131.34 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++.++.||++||+|+++++.+....+ ... ...++++|+.+++.+++.+++||+|+|||+|+++++..+ +|..
T Consensus 185 s~~~a~~~Efi~TfiLv~vi~~v~~~~~---~~~--~~~~l~iGl~V~~~~l~~g~~TGa~mNPARtlgPal~~~-~~~~ 258 (298)
T PLN00026 185 STGQAFALEFIITFNLLFVVTAVATDTR---AVG--ELAGIAVGATVMLNILVAGPSTGGSMNPVRTLGPAVAAG-NYRA 258 (298)
T ss_pred cHHHHHHHHHHHHHHHHHhheeeecCCC---CcC--CccchHHHHHHHHHHHHhcccCccccChHHHHHHHHhcC-Cchh
Confidence 4678999999999999998775422211 111 135689999999999999999999999999999999987 8999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVT 160 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~ 160 (306)
.|+||++|++|+++|++++..+.-
T Consensus 259 ~wVy~vaPilGAilga~ly~~~~~ 282 (298)
T PLN00026 259 IWIYLVAPTLGALAGAGTYTAVKL 282 (298)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999988776643
No 19
>PLN00183 putative aquaporin NIP7; Provisional
Probab=99.52 E-value=5.1e-14 Score=128.56 Aligned_cols=100 Identities=24% Similarity=0.372 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccch
Q 040654 58 VWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRA 137 (306)
Q Consensus 58 ~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~ 137 (306)
.++.+++|+++|+++++.+++.....+. .+ ...++.+|+.+++.+++.+++||+|+|||+|++.++.+ .+|.+.
T Consensus 160 ~~~~~~~E~v~T~iLv~~i~~~~~~~~~----~~-~~~~l~iGl~v~~~v~~~g~~TG~~~NPArtlgpai~~-~~~~~~ 233 (274)
T PLN00183 160 CSSAFWVEFIATFIVMFLAASLTSQPQS----LG-HLSGFVIGIAIGLAVLITGPVSGGSMNPARSLGPAIVS-WDFKDI 233 (274)
T ss_pred HHHHHHHHHHHHHHHHHhhheeeccccC----CC-CceehHHHHHHHHHHHhccCCCCCEeCHHHHHHHHHhC-CChhhe
Confidence 4689999999999999987765432211 11 13467899999999999999999999999999999987 589999
Q ss_pred hHHHHHHhhHHHHHHHHHHHHHhhhh
Q 040654 138 AIYILAQCVGGIFGALALEAVVTKKI 163 (306)
Q Consensus 138 ~~yi~aQ~lGa~~ga~~~~~~~~~~~ 163 (306)
|+||++|++|+++|+++.+.++.+..
T Consensus 234 wvy~vapilGailaa~l~~~l~~~~~ 259 (274)
T PLN00183 234 WIYITAPTIGAVAGALMFHLLRLRTQ 259 (274)
T ss_pred ehHHHHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999999998876553
No 20
>TIGR00861 MIP MIP family channel proteins. processes. Some members of the family, including the yeast FPS protein (TC #1.A.8.5.1) and tobacco NtTIPA may transport both water and small solutes.
Probab=99.49 E-value=1e-13 Score=122.92 Aligned_cols=95 Identities=21% Similarity=0.364 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcc-ccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTG-ITSFT 135 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g-~~~~~ 135 (306)
+.++.++.|+++|+++++..+...... +... .....++.+|+.++..++..+++||+|+|||++++.++.+ .++|.
T Consensus 120 ~~~~~~~~E~i~T~~lv~~~~~~~~~~--~~~~-~~~~~~~~iG~~v~~~~~~~g~~sG~~~NPAr~l~~~l~~~~~~~~ 196 (216)
T TIGR00861 120 SSGQAFFVEFIGTAILVLVIFATTDPR--NRVP-RGGFAPLAIGLLVFLIHLSMGPYTGTGMNPARSLGPALFAGLAGWG 196 (216)
T ss_pred cHHHHHHHHHHHHHHHHHHHheeecCC--CCCC-CCccHHHHHHHHHHHHHHhCCCCcccccCchhhhhHHHHhcccccc
Confidence 568999999999999999877654321 1111 1125788999999999999999999999999999999986 47899
Q ss_pred chhHHHHHHhhHHHHHHHH
Q 040654 136 RAAIYILAQCVGGIFGALA 154 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~ 154 (306)
+.++||++|++|+++|+.+
T Consensus 197 ~~~vy~vap~~Ga~~a~~~ 215 (216)
T TIGR00861 197 NHWVYWVGPIIGAILGALV 215 (216)
T ss_pred ceeHHHHHHHHHHHHHHHh
Confidence 9999999999999999865
No 21
>PLN00184 aquaporin NIP1; Provisional
Probab=99.43 E-value=4.5e-13 Score=123.56 Aligned_cols=106 Identities=19% Similarity=0.162 Sum_probs=74.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHH
Q 040654 188 GLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV 267 (306)
Q Consensus 188 ~~s~~~~~~~E~i~T~~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~ 267 (306)
+.+..+.++.|+++||+|+++++........... +.... .+++..|+.+.+.....+ ++||+++||||+|++++.
T Consensus 50 ~~~~~~~~~aEfiGTflLvf~g~g~~~~~~~~~~-~~~~~--~iai~~Gl~v~~~i~~~g--~iSGaH~NPAVTla~al~ 124 (296)
T PLN00184 50 SVPFLQKLIAEVLGTYFLVFTGCASVVVNMQNDN-VVTLP--GIAIVWGLTIMVLIYSLG--HISGAHINPAVTIAFASC 124 (296)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCC-ccccH--HHHHHHHHHHHHHHHHhc--CCCccccCHHHHHHHHHh
Confidence 3567899999999999999988765432221111 11111 233333444444444444 899999999999999996
Q ss_pred hCCCCCCcceehhhhHHHHHHHHHHHHHHccc
Q 040654 268 RGGHLWDRHWVFWAGPAIACVAFALYTKLIPS 299 (306)
Q Consensus 268 ~g~~~~~~~wvywv~P~iGa~~a~l~~~~~~~ 299 (306)
+...|...|+||++|++|+++++++++.+..
T Consensus 125 -g~~~~~~~~~YiiaQllGA~lga~~~~~l~~ 155 (296)
T PLN00184 125 -GRFPLKQVPAYVISQVIGSTLAAATLRLLFG 155 (296)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4457889999999999999999987776653
No 22
>KOG0223 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3.1e-13 Score=120.50 Aligned_cols=99 Identities=20% Similarity=0.304 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++.++.|++.||+++|..++.....+.+ ...++.+|+++.+.+++.+++||+++|||+|++.++..+. |..
T Consensus 130 ~~~q~~~~E~ilTf~Lv~~v~~~a~d~~~~------~~a~l~IG~~v~~~~l~~g~~TG~sMNPArSfGpAvv~~~-w~~ 202 (238)
T KOG0223|consen 130 STGQGLVIEIILTFILVFTVFATATDPRRS------ELAPLAIGFSVGLNILAAGPFTGASMNPARSFGPAVVYGS-WDD 202 (238)
T ss_pred CcchhHHHHHHHHHHHhheeEEEeecCCCc------ccHHHHHHHHHHHHHHeecCcCcCccCcHHHhhHHHHhcC-CCc
Confidence 457899999999999999777644333222 5778899999999999999999999999999999999884 999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhhh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVTKK 162 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~~~ 162 (306)
+|+||++|++|+++++++.+.++.++
T Consensus 203 hwiYwvgP~~Ga~~a~~~y~~v~~~~ 228 (238)
T KOG0223|consen 203 HWIYWVGPLLGAILAALIYRLVFIPD 228 (238)
T ss_pred EEEEEhhHHHHHHHHHHHHHHhccCc
Confidence 99999999999999999998887765
No 23
>PLN00166 aquaporin TIP2; Provisional
Probab=99.41 E-value=6.9e-13 Score=119.86 Aligned_cols=107 Identities=22% Similarity=0.386 Sum_probs=76.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcc--ccc-ccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHH
Q 040654 189 LGTRQALWLEIICSFVFLFASVWMAFDS--RQA-KALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPA 265 (306)
Q Consensus 189 ~s~~~~~~~E~i~T~~L~~~i~~~~~d~--~~~-~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~ 265 (306)
.+..+.++.|+++|++|+++.+....+. ..+ +..+. ...+.+.+.+|+.+++...+.+ ++||+++||||++++.
T Consensus 15 ~~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~-~~~~~ial~~Gl~v~~~i~~~g--~iSGah~NPAvt~~~~ 91 (250)
T PLN00166 15 VASLKAYLSEFIATLLFVFAGVGSAIAFAKLTSDAALDP-AGLVAVAVAHAFALFVGVSIAA--NISGGHLNPAVTLGLA 91 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccCCC-CccHHHHHHHHHHHHHHHHHHh--cccccccCHHHHHHHH
Confidence 4677899999999999999887764431 111 10000 0112344455555555555544 8999999999999999
Q ss_pred HHhCCCCCCcceehhhhHHHHHHHHHHHHHHccc
Q 040654 266 LVRGGHLWDRHWVFWAGPAIACVAFALYTKLIPS 299 (306)
Q Consensus 266 l~~g~~~~~~~wvywv~P~iGa~~a~l~~~~~~~ 299 (306)
+. +...|...|+||++|++|+++++.+++.+..
T Consensus 92 l~-g~~~~~~~~~y~~aq~lGa~~~a~~~~~~~~ 124 (250)
T PLN00166 92 IG-GNITIITGFFYWIAQCLGSIVACLLLVFVTN 124 (250)
T ss_pred Hh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 96 4446888899999999999999998887754
No 24
>PLN00167 aquaporin TIP5; Provisional
Probab=99.35 E-value=3.9e-12 Score=115.30 Aligned_cols=108 Identities=22% Similarity=0.349 Sum_probs=76.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccc--cccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHH
Q 040654 189 LGTRQALWLEIICSFVFLFASVWMAFDSRQ--AKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPAL 266 (306)
Q Consensus 189 ~s~~~~~~~E~i~T~~L~~~i~~~~~d~~~--~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l 266 (306)
-+..+.++.|+++||+|+++.+....+.+. .+........+.+++.+|+.+.+...+.+ ++||+++|||+++++.+
T Consensus 19 ~~~~~~~laEflgTf~lv~~~~g~~~~~~~~~~~~~~~~~~~~~i~l~~Gl~v~~~i~~~g--~iSGah~NPAvtl~~~~ 96 (256)
T PLN00167 19 RNALRSYLAEFISTFFFVFAAVGSAMSSRKLMPDAASDPSSLLIVAIANAFALSSAVYIAA--NISGGHVNPAVTFGMAV 96 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccCCCCcchHHHHHHHHHHHHHHHHhh--cccccccCHHHHHHHHH
Confidence 356789999999999999888766543321 11000001122344555555555544444 89999999999999999
Q ss_pred HhCCCCCCcceehhhhHHHHHHHHHHHHHHccc
Q 040654 267 VRGGHLWDRHWVFWAGPAIACVAFALYTKLIPS 299 (306)
Q Consensus 267 ~~g~~~~~~~wvywv~P~iGa~~a~l~~~~~~~ 299 (306)
. +.-.|...|+||++|++|+++++++++.+.+
T Consensus 97 ~-g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 128 (256)
T PLN00167 97 G-GHISVPTAMFYWISQMLASVMACLFLKVTTV 128 (256)
T ss_pred h-CCCcHhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 6 4456889999999999999999987777643
No 25
>PLN00027 aquaporin TIP; Provisional
Probab=99.33 E-value=5.2e-12 Score=114.42 Aligned_cols=107 Identities=20% Similarity=0.297 Sum_probs=73.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc--ccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHH
Q 040654 190 GTRQALWLEIICSFVFLFASVWMAFD--SRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV 267 (306)
Q Consensus 190 s~~~~~~~E~i~T~~L~~~i~~~~~d--~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~ 267 (306)
+..+.++.|+++|++|+++.+..... .......+.....+.+++.+|+.+.+...+.. ++||+++||||++++.+.
T Consensus 18 ~~~~~~~aEfigTf~lv~~g~g~~~~~~~~~~~~~~~~~~~l~~~l~~Gl~v~~~i~~~~--~iSGah~NPAvtl~~~~~ 95 (252)
T PLN00027 18 DALKAALAEFISTLIFVFAGEGSGMAFNKLTDNGSTTPAGLVAAALAHAFALFVAVSVGA--NISGGHVNPAVTFGAFIG 95 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCcchHHHHHHHHHHHHHHHHHHc--ccCccccChHHHHHHHHh
Confidence 45788999999999999887765321 11100000000112344445555555444444 889999999999999975
Q ss_pred hCCCCCCcceehhhhHHHHHHHHHHHHHHccc
Q 040654 268 RGGHLWDRHWVFWAGPAIACVAFALYTKLIPS 299 (306)
Q Consensus 268 ~g~~~~~~~wvywv~P~iGa~~a~l~~~~~~~ 299 (306)
+...|...|+||++|++|+++++++++++..
T Consensus 96 -g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 126 (252)
T PLN00027 96 -GNITLLRGILYWIAQLLGSVVACLLLKFSTG 126 (252)
T ss_pred -CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5446788899999999999999988876643
No 26
>PTZ00016 aquaglyceroporin; Provisional
Probab=99.25 E-value=1.5e-11 Score=113.74 Aligned_cols=103 Identities=23% Similarity=0.282 Sum_probs=72.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhC
Q 040654 190 GTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRG 269 (306)
Q Consensus 190 s~~~~~~~E~i~T~~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g 269 (306)
+..+.++.|+++|++|+++.+....+....+.... ...+++..|+.+++...+.+ +++|+++|||+++++.+. +
T Consensus 48 ~~~~~~laEfigT~llvf~g~g~~~~~~~~~~~~~---~~~ial~~Glav~~~i~~~g--~iSG~h~NPAVTla~~l~-g 121 (294)
T PTZ00016 48 PNVREYVAEFLGTFVLLFFGEGVVATTHTVGNNGD---YLAITIGWGLGVTFGLLVSA--GISGGHLNPAVTLGNAVF-G 121 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCC---cHHHHHHHHHHHHHHHHHhc--ccCcCccCHHHHHHHHHh-c
Confidence 45689999999999999887665433211110111 12344445555555544444 799999999999999997 4
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHcc
Q 040654 270 GHLWDRHWVFWAGPAIACVAFALYTKLIP 298 (306)
Q Consensus 270 ~~~~~~~wvywv~P~iGa~~a~l~~~~~~ 298 (306)
.-.|...|+||++|++|+++++++.+.+.
T Consensus 122 ~i~~~~~~~YiiaQ~lGa~~ga~ll~~~~ 150 (294)
T PTZ00016 122 KFPWKKLPGYFVAQLLGAFVGAACVYGLY 150 (294)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999999986655443
No 27
>PRK05420 aquaporin Z; Provisional
Probab=99.20 E-value=5.3e-11 Score=106.50 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccc-cccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGI-TSFT 135 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~-~~~~ 135 (306)
+..+.++.|+++|++|++....... .+ + +....++.+|+.+....++.++.||+.+|||+++++.+... ..+.
T Consensus 130 ~~~~~~~~E~v~T~iLv~~i~~~~~-~~--~---~~~~~p~~iGl~v~~~~~~~~~~TG~s~NPAR~~gpal~~g~~~~~ 203 (231)
T PRK05420 130 SLLAALVCEVVLTAFFLLVILGATD-KR--A---PAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGVALFVGGWALE 203 (231)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhC-CC--C---CCcchHHHHHHHHHHHHHHhhccCCCccCcHHHHHHHHHhCCCCcc
Confidence 4679999999999999997664321 11 1 11246789999999999999999999999999999999753 4456
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
..|+||++|++|+++++++.+.++.+
T Consensus 204 ~~wvy~vgP~~Ga~laa~~y~~l~~~ 229 (231)
T PRK05420 204 QLWLFWVAPIVGAIIGGLIYRLLLEK 229 (231)
T ss_pred ceEEeehHHHHHHHHHHHHHHHHhcc
Confidence 89999999999999999988777554
No 28
>PF00230 MIP: Major intrinsic protein; InterPro: IPR000425 A number of transmembrane (TM) channel proteins can be grouped together on the basis of sequence similarities [, , , , ]. These include: Mammalian major intrinsic protein (MIP). MIP is the major component of lens fibre gap junctions. Mammalian aquaporins []. These proteins form water- specific channels that provide the plasma membranes of red cells and kidney prox imal and collecting tubules with high permeability to water, thereby permitting water to move in the direction of an osmotic gradient. Soybean nodulin-26, a major component of the peribacteroid membrane induced during nodulation in legume roots after Rhizobium infection. Plants tonoplast intrinsic proteins (TIP). There are various isoforms of TIP : alpha (seed), gamma, Rt (root), and Wsi (water-stress induced). These proteins may allow the diffusion of water, amino acids and/or peptides from the tonoplas t interior to the cytoplasm. Bacterial glycerol facilitator protein (gene glpF), which facilitates the mo vement of glycerol across the cytoplasmic membrane. Salmonella typhimurium propanediol diffusion fac ilitator (gene pduF). Yeast FPS1, a glycerol uptake/efflux facilitator protein. Drosophila neurogenic protein 'big brain' (bib). This protein may mediate in tercellular communication; it may functions by allowing the transport of certain molecules(s) and thereby sending a signal for an exodermal cell to become an ep idermoblast instead of a neuroblast. Yeast hypothetical protein YFL054c. A hypothetical protein from the pepX region of Lactococcus lactis. The structures of various members of the MIP family have been determined by means of X-ray diffraction [, , ], revealing the fold to comprise a right-handed bundle of 6 transmembrane (TM) alpha-helices [, , ]. Similarities in the N-and C-terminal halves of the molecule suggest that the proteins may have arisen through tandem, intragenic duplication of an ancestral protein that contained 3 TM domains []. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins []. Aquaporin-CHIP (Aquaporin 1) belongs to the Colton blood group system and is associated with Co(a/b) antigen.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3NE2_A 2C32_A 1YMG_A 2B6P_A 3C02_A 2B5F_D 3CN6_A 3CN5_A 1Z98_M 3CLL_A ....
Probab=99.02 E-value=5.9e-10 Score=99.43 Aligned_cols=94 Identities=20% Similarity=0.332 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++.+..|+++|++|++........ +..... .-..++.+|+.+....+..++.||+.+|||++++..+.... |..
T Consensus 133 s~~~~~~~E~~~t~il~~~i~~~~~~--~~~~~~-~~~~p~~ig~~v~~~~~~~~~~tG~~~NPAr~~g~~l~~~~-~~~ 208 (227)
T PF00230_consen 133 SLGQAFFSEFIGTFILVLVILAVADD--KRKFPL-GPLAPLAIGLTVGALVLAGGPYTGASLNPARALGPALFSGI-WDY 208 (227)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTST--TSSSTS-SGGHHHHHHHHHHHHHHHHHHHHST-SSHHHHHHHHHHHTH-HTT
T ss_pred hhhhhhhhhhhhhhHHHhhhhhhccc--cccccc-ccccceeEEEEEeecccccccccccccCchhhcCceeeccc-CCe
Confidence 46789999999999999866543211 111111 12467889999999999999999999999999999998876 999
Q ss_pred hhHHHHHHhhHHHHHHHH
Q 040654 137 AAIYILAQCVGGIFGALA 154 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~ 154 (306)
.|+||+++++|+++|+++
T Consensus 209 ~wvy~~~P~~Ga~~a~~~ 226 (227)
T PF00230_consen 209 FWVYWVGPFIGAILAALL 226 (227)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred EEEEEehHHHHHHHHHhh
Confidence 999999999999999876
No 29
>COG0580 GlpF Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism]
Probab=98.94 E-value=1.1e-09 Score=97.68 Aligned_cols=107 Identities=21% Similarity=0.211 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCC
Q 040654 191 TRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGG 270 (306)
Q Consensus 191 ~~~~~~~E~i~T~~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~ 270 (306)
..+-++.|+++|++|++........-...+..+.......|.+..|+.+.++..+.+ ++||+++|||.+++.++. +.
T Consensus 4 ~~~~~~aEflGT~~Li~~G~G~~a~~~l~~~~~~~~~~~~i~~~wGl~V~~~iy~~g--~iSGaHlNPAVTi~la~~-g~ 80 (241)
T COG0580 4 LTKKLLAEFLGTFLLIFFGNGSVAAVALKGSKALGGGWLGIALAWGLGVLVAIYAFG--GISGAHLNPAVTIALAVR-GR 80 (241)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHhccccccccceeehhHHHHHHHHHHHHhcc--CcCccccChHHHHHHHHh-CC
Confidence 345579999999999987655443222111111111223466667777777766655 999999999999999997 44
Q ss_pred CCCCcceehhhhHHHHHHHHHHHHHHcccC
Q 040654 271 HLWDRHWVFWAGPAIACVAFALYTKLIPSQ 300 (306)
Q Consensus 271 ~~~~~~wvywv~P~iGa~~a~l~~~~~~~~ 300 (306)
-.|...-.||++|++|+++++.+...+...
T Consensus 81 fp~~~v~~YivAQ~lGA~~ga~l~~~~~~~ 110 (241)
T COG0580 81 FPWRKVLPYIVAQVLGAFAGAALLYLLYYG 110 (241)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578888889999999999998544444333
No 30
>KOG0224 consensus Aquaporin (major intrinsic protein family) [Carbohydrate transport and metabolism]
Probab=98.80 E-value=4.6e-09 Score=95.17 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=65.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcccccccc-cchh-HHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHH
Q 040654 189 LGTRQALWLEIICSFVFLFASVWMAFDSRQAKAL-GRVT-VCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPAL 266 (306)
Q Consensus 189 ~s~~~~~~~E~i~T~~L~~~i~~~~~d~~~~~~~-~~~~-~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l 266 (306)
....+.++.|+++|++|++.-+........++.. +... .-+.-|+.+.+.|++ .+ ..||+++|||.+|+..+
T Consensus 29 ~~l~Re~LAEFlGT~vL~~~G~g~v~Q~vls~g~~g~~~~vnlgwg~av~~gVyv----ag--~iSGgHlNPAVS~a~~~ 102 (316)
T KOG0224|consen 29 NELLREFLAEFLGTFVLVVFGLGSVAQAVLSGGTGGSFIGVNLGWGFAVMMGVYV----AG--RISGGHLNPAVSLAMCI 102 (316)
T ss_pred HHHHHHHHHHHHhHHHHHhhccceeEEEEeccCCCCceEEEEehHhHHHHHHHHh----hc--cccccccCHHHHHHHHH
Confidence 3577889999999999997665543332222111 1100 011223334433443 34 89999999999999999
Q ss_pred HhCCCCCCcceehhhhHHHHHHHHH
Q 040654 267 VRGGHLWDRHWVFWAGPAIACVAFA 291 (306)
Q Consensus 267 ~~g~~~~~~~wvywv~P~iGa~~a~ 291 (306)
+ |.-.|....+|.+++++|+.+++
T Consensus 103 ~-g~~p~~k~p~Y~~aQ~iGAF~ga 126 (316)
T KOG0224|consen 103 L-GRLPWKKFPVYVLAQFIGAFLGA 126 (316)
T ss_pred h-cCCChhhhhHHHHHHHHHHHHHH
Confidence 8 45678899999999999999876
No 31
>COG2116 FocA Formate/nitrite family of transporters [Inorganic ion transport and metabolism]
Probab=93.27 E-value=3.1 Score=37.96 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=98.9
Q ss_pred chHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCc
Q 040654 92 NLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGG 171 (306)
Q Consensus 92 ~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~ 171 (306)
.+.-++.+++++.+.+++.+..=-+ |--........++++|++.+--|.-=.+|=++|++++-.++.-........+.
T Consensus 64 ~lvg~~~F~~GLilVv~~g~ELfT~--n~m~~t~~~~~k~Is~~~ll~~w~~v~lgNliGa~~~a~l~~~~g~~~~~~~~ 141 (265)
T COG2116 64 KLVGGLVFSLGLILVVIAGSELFTS--NTMLLTVGVLSKKISWGQLLRNWLVVYLGNLIGALFVALLFHLSGFNLTANGQ 141 (265)
T ss_pred HHHHHHHHHHHHHHhhhhCcccccc--chhHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccch
Confidence 3556666777766666665543111 33344445567889999988888877888888888776665221100100000
Q ss_pred ceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCC
Q 040654 172 CTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGY 251 (306)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~ 251 (306)
....+.. -.. -+.+.+..+.|.-=++|.++.++.+. +...-|.. .+. ++.+......|+.. ++
T Consensus 142 ~~~~~~~-~a~--~K~~~t~~~~F~~GI~cN~lVclAvw-m~~~~k~~--~~K-----~~~m~~pv~~Fv~~------Gf 204 (265)
T COG2116 142 WGLFVLG-VAE--HKLHHTFLEAFAKGILCNWLVCLAVW-MSYSAKDG--AAK-----IFAIILPVMLFVAS------GF 204 (265)
T ss_pred hHHHHHH-HHH--HhcCchHHHHHHHHHHHHHHHHHHHH-HHhcccch--hhH-----HHHHHHHHHHHHHc------CC
Confidence 0000000 000 01234668888888888888887753 44332221 111 23333333344432 33
Q ss_pred CCCcccccchHHHHHHhCCCCCCc-ce---ehh-hhHHHH-HHHHHHHHHHcccCcCCC
Q 040654 252 AGAGLNPARCLGPALVRGGHLWDR-HW---VFW-AGPAIA-CVAFALYTKLIPSQNLHT 304 (306)
Q Consensus 252 tG~~~NPAr~lgp~l~~g~~~~~~-~w---vyw-v~P~iG-a~~a~l~~~~~~~~~~~~ 304 (306)
.=...|=..-.-.+.+.+...|.+ .| ++. +|-++| +++.++.|.++++++.++
T Consensus 205 eH~VANm~~i~~~~~~~~~~~~~~fi~~Nlipv~lGNivGG~v~vgl~Y~~~~~~~~~~ 263 (265)
T COG2116 205 EHSVANMFMIPWAAVFSGALTWADFILKNLIPVTLGNIVGGAVFVGLMYWYLYRKQNRY 263 (265)
T ss_pred ceeeehHHHHHHHHHcCChhhhHHHHHHHHHHHHHhchhcchhhhhHHHHHhccccccc
Confidence 322344222112334444445655 22 222 455665 456678888888776654
No 32
>PRK11562 nitrite transporter NirC; Provisional
Probab=81.93 E-value=42 Score=30.80 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcc
Q 040654 94 VMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGC 172 (306)
Q Consensus 94 ~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~ 172 (306)
..+..+++++.+.++..+.. +| |=....-..+.||.+|++.+-.|.-=.+|=++|++++-.++...........+.
T Consensus 60 i~g~~F~~GLilVi~~G~eLFTg---n~~~~~~~~~~~~~s~~~~lr~w~iv~~GNliGa~~~A~l~~~~~~~~~~~~~~ 136 (268)
T PRK11562 60 VMGATFGIALTLVIIAGSELFTG---HTMFLTFGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTS 136 (268)
T ss_pred HHHHHHHHHHHHHHHhCcccccc---chHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhH
Confidence 44556666666655554432 23 434444566778899998888877777777777777655543210000000000
Q ss_pred eeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 173 TLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 173 ~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
...-.+. .+...+..+.|+-=++|.++..+.+.
T Consensus 137 ~~~~ia~-----~K~~~~~~~~f~~gI~CNwLVclavw 169 (268)
T PRK11562 137 IVHSVAL-----AKTTAPAMVLFFKGALCNWLVCLAIW 169 (268)
T ss_pred HHHHHHH-----HHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 11135678888888889988887764
No 33
>COG4760 Predicted membrane protein [Function unknown]
Probab=76.09 E-value=17 Score=31.92 Aligned_cols=117 Identities=15% Similarity=0.105 Sum_probs=62.6
Q ss_pred CCCC-CccccccCCCCccCCCCCcchhhccccccccCCCCcchhccccccchhHHHHHHHHHHHHHHHHHHHhhheeEEe
Q 040654 4 NSEL-AGDIEGEYGGNRVQPFATPKQEQRLMDEEKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVIS 82 (306)
Q Consensus 4 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~ 82 (306)
.+|+ .+..++.++++..-...+.++....+.-...+++.+..+...+++...++ -..++-.+.|.+.-|....+ +
T Consensus 4 t~npv~r~~~~~rs~~~~fgt~~~~qg~p~~~y~~vyre~~A~rpmTiddvvtkT--G~tLav~~vtavvs~~~~lv--~ 79 (276)
T COG4760 4 TSNPVFRSLPKQRSGYADFGTGSAQQGFPADPYLAVYREGNATRPMTIDDVVTKT--GATLAVLLVTAVVSFFLVLV--N 79 (276)
T ss_pred CCCchhhcCcccccccccccCCccccCCCCCcchhhhhcccccCceeecchhhhh--hHHHHHHHHHHHHHHHHHhc--C
Confidence 3444 33344445554443333333332222222344555555666777665443 45566677777777643321 1
Q ss_pred cccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccc
Q 040654 83 SIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGI 131 (306)
Q Consensus 83 ~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~ 131 (306)
.. -..+...+. ++|..+.+++..+|+- +=||++++..++...
T Consensus 80 p~---La~~ltlvG-aiGGlilvLvatFgkK---~~spai~l~YAv~EG 121 (276)
T COG4760 80 PA---LAMPLTLVG-AIGGLILVLVATFGKK---QWSPAIVLSYAVLEG 121 (276)
T ss_pred HH---hcccHhHHH-HhhhHHHHHHHHhccc---cCChHHHHHHHHHHH
Confidence 00 011222344 7777777888777653 568999998887754
No 34
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=47.25 E-value=2.3e+02 Score=26.08 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=28.5
Q ss_pred cc-ChHHHHHHHHcccc-----cccchh------HHHHHHhhHHHHHHHHHHHHHh
Q 040654 117 HI-NPLVSFAAALTGIT-----SFTRAA------IYILAQCVGGIFGALALEAVVT 160 (306)
Q Consensus 117 h~-NPavTla~~l~g~~-----~~~~~~------~yi~aQ~lGa~~ga~~~~~~~~ 160 (306)
+. ||+..+..++..++ |..--- .-|+.|-+-+.++......+.+
T Consensus 110 ~~~sp~l~~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~lY 165 (274)
T PF12811_consen 110 KVWSPALAPIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLALY 165 (274)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 55 89999988887653 322111 2388888888777766655544
No 35
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=45.68 E-value=3.4e+02 Score=27.59 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=31.7
Q ss_pred ChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 119 NPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 119 NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
-.+|..+.+-...-|......++.+.++|+.+|....+.++|.
T Consensus 371 ~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~ 413 (650)
T PF04632_consen 371 MAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPH 413 (650)
T ss_pred HHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 3444444444455678889999999999999999888877664
No 36
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=44.44 E-value=94 Score=28.28 Aligned_cols=27 Identities=7% Similarity=0.109 Sum_probs=23.1
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 135 TRAAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 135 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
...+-|+++|+.|.++.+-+++.+|--
T Consensus 217 ~~~ldYvFs~f~GIfltSt~~F~~Y~~ 243 (254)
T PF07857_consen 217 QNGLDYVFSHFSGIFLTSTVYFVIYCI 243 (254)
T ss_pred CcchheeHHHHhhHHHHHHHHHHHHHH
Confidence 477889999999999999988877653
No 37
>PRK09713 focB putative formate transporter; Provisional
Probab=42.54 E-value=2.8e+02 Score=25.62 Aligned_cols=108 Identities=15% Similarity=0.201 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhh-hhhhhcc--
Q 040654 93 LVMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTK-KIAHNFS-- 168 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~-~~~~~~~-- 168 (306)
+.-++.+.+++.+.++..+.. +| |=. ++.....++++|++....|.-=.+|=++|++++-.+... .......
T Consensus 68 ll~g~~F~vGLilIv~~g~ELfTg---N~~-~~~~~~~~~i~~~~~l~~w~iv~~GNlvGal~~A~l~~~s~~~~~~~~~ 143 (282)
T PRK09713 68 LVGGLCFTLGFILLAVCGTSLFTS---SVM-TVMAKSRGVISWRTWLINALLVACGNLAGIACFSLLIWFSGLVMSENAM 143 (282)
T ss_pred HHHHHHHHHHHHHHHHhCccccHH---HHH-HHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchh
Confidence 344556666666666554443 23 222 223356788888888855444444444444444333221 1100000
Q ss_pred CCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 169 LGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 169 ~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
.+.....+ + ..+...++.+.|+--++|.++.++.+.
T Consensus 144 ~~~~~~~i-a-----~~K~~~~~~~~F~~gI~CN~lVclaV~ 179 (282)
T PRK09713 144 WGVAVLHC-A-----EGKMHHTFTESVSLGIMCNLMVCLALW 179 (282)
T ss_pred HHHHHHHH-H-----HHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 0 011245788999999999998888764
No 38
>PF01226 Form_Nir_trans: Formate/nitrite transporter; InterPro: IPR000292 Proteins in this entry belong to the Formate-Nitrite Transporter (FNT) family (TC 2.A.44). The prokaryotic proteins of the FNT family probably function in the transport of the structurally related compounds, formate and nitrite. The homologous yeast protein may function as a short chain aliphatic carboxylate H+ symporter, transporting formate, acetate and propionate, and functioning primarily as an acetate uptake permease.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3Q7K_H 3KLY_E 3KLZ_A 3TDX_C 3TE2_B 3TDS_B 3TDR_E 3TDO_C 3TE1_B 3TDP_C ....
Probab=40.46 E-value=1.7e+02 Score=26.43 Aligned_cols=110 Identities=15% Similarity=0.157 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhh--ccCC
Q 040654 93 LVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHN--FSLG 170 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~--~~~g 170 (306)
+..++.+++++.+.++..+..=- =|-.+.....+.||.+|++.+--|.-=.+|=++|++++-.+........ ...+
T Consensus 58 l~~g~~F~~Gl~lIv~~g~eLfT--gn~~~~~~~~~~~~~~~~~~l~~w~~v~~gNliG~~~~a~l~~~~~~~~~~~~~~ 135 (250)
T PF01226_consen 58 LVGGLVFPIGLVLIVFLGGELFT--GNMMVMTLALLNKRISWKKLLRNWGIVYLGNLIGALLFAYLFAFSGGFMSSPAMG 135 (250)
T ss_dssp HHHHHHHTHHHHHHHHHT---TT--TTCHHHHHHHCTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTGGGTTTHHH
T ss_pred HHHHHHHHHHHHHHHHhcchhcc--cchHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHH
Confidence 45566666666666665544321 2666666677788899998887777777777777776655543211100 0000
Q ss_pred cceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 171 GCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
.....+ +. .+...++.+.|+-=++|.++..+.+.
T Consensus 136 ~~~~~~-a~-----~K~~~~~~~~f~~gI~cN~lVclav~ 169 (250)
T PF01226_consen 136 EYLISV-AE-----HKVSHTFWELFFRGILCNWLVCLAVW 169 (250)
T ss_dssp HHHHHH-HH-----CCSSS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-----HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 11235788889999999998887764
No 39
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=37.31 E-value=50 Score=23.51 Aligned_cols=30 Identities=20% Similarity=0.538 Sum_probs=19.0
Q ss_pred cchHHHHHHhCCCCCCcceehhhhHHHHHHHH
Q 040654 259 ARCLGPALVRGGHLWDRHWVFWAGPAIACVAF 290 (306)
Q Consensus 259 Ar~lgp~l~~g~~~~~~~wvywv~P~iGa~~a 290 (306)
..++|-++......+...|.||+| +|++++
T Consensus 9 ~~tlG~~vL~~rG~~~~~~WyWIg--vgaL~G 38 (65)
T PF08370_consen 9 NSTLGVAVLKSRGLFTESYWYWIG--VGALLG 38 (65)
T ss_pred CCcHHHHHHHHcCCCCCCcEEeeh--HHHHHH
Confidence 478898888643345555668876 455544
No 40
>PRK10805 formate transporter; Provisional
Probab=34.81 E-value=3.7e+02 Score=24.82 Aligned_cols=110 Identities=17% Similarity=0.195 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhh-hhhhccCC
Q 040654 93 LVMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKK-IAHNFSLG 170 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~-~~~~~~~g 170 (306)
+..++.+.+++.+.++..... +| |-..++ ..+.+|.+|.+.+-.|.-=.+|=++|++++-.+.... .... ..+
T Consensus 69 ll~~~~F~vGlilIvl~g~eLFTg---n~l~~~-~~~~~~~~~~~~lr~w~iv~~GNliGal~~a~l~~~s~~~~~-~~~ 143 (285)
T PRK10805 69 LVGGICFSLGLILCVVCGADLFTS---TVLIVV-AKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMT-ANG 143 (285)
T ss_pred HHHHHHHHHHHHHHHHhCcccchh---hHHHHH-HHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc-Ccc
Confidence 344556666666655554443 44 555554 4678889999888655555555555555543332211 0000 000
Q ss_pred cceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 171 GCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
.-....... ...+.+.++.+.|+-=++|.++.++.+.
T Consensus 144 ~~~~~~~~~---a~~K~~~~~~~~f~~gI~CN~lVclaV~ 180 (285)
T PRK10805 144 QWGLNVLQT---ADHKVHHTFIEAVCLGILANLMVCLAVW 180 (285)
T ss_pred HHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0011235788888888899998887764
No 41
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=34.59 E-value=12 Score=29.65 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=16.4
Q ss_pred cccccChHHHHHHHHccc
Q 040654 114 SGGHINPLVSFAAALTGI 131 (306)
Q Consensus 114 SGah~NPavTla~~l~g~ 131 (306)
|+||+||.+.++-.+.++
T Consensus 8 t~Ghv~P~lala~~L~~r 25 (139)
T PF03033_consen 8 TRGHVYPFLALARALRRR 25 (139)
T ss_dssp SHHHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHhcc
Confidence 689999999999999876
No 42
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=33.45 E-value=5.8e+02 Score=26.63 Aligned_cols=47 Identities=15% Similarity=0.104 Sum_probs=37.4
Q ss_pred ccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 115 GGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 115 Gah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
++-+..+|..+++....-|..-..-+..++++|..+|.+..+.++|.
T Consensus 380 ~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~ 426 (652)
T PRK10631 380 GAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPN 426 (652)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 46678888888887777777778888999999999998887777664
No 43
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=28.50 E-value=3.9e+02 Score=23.10 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=22.3
Q ss_pred ccccccchhHHHHHHhhHHHHHHHHHH
Q 040654 130 GITSFTRAAIYILAQCVGGIFGALALE 156 (306)
Q Consensus 130 g~~~~~~~~~yi~aQ~lGa~~ga~~~~ 156 (306)
++++|+....+.++-+.|+.+|+.+..
T Consensus 59 ~~i~~~~~~~~~~~~~~g~~iG~~l~~ 85 (240)
T PF01925_consen 59 GNIDWKIVLPLIIGALIGVVIGAWLLS 85 (240)
T ss_pred cccchhhhhhhhhHhHHHHHHHHhhhc
Confidence 348999999999999999999876654
No 44
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=23.86 E-value=82 Score=19.32 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHHHccc
Q 040654 281 AGPAIACVAFALYTKLIPS 299 (306)
Q Consensus 281 v~P~iGa~~a~l~~~~~~~ 299 (306)
.+|.+++++++++...++.
T Consensus 15 AAP~iagIi~s~iv~w~~~ 33 (35)
T PF13940_consen 15 AAPIIAGIIASLIVGWLRN 33 (35)
T ss_pred HhHHHHHHHHHHHHHHHHh
Confidence 7999999999887766543
No 45
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=21.31 E-value=22 Score=33.66 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.6
Q ss_pred hccccccccChHHHHHHHHcc
Q 040654 110 TFPISGGHINPLVSFAAALTG 130 (306)
Q Consensus 110 ~~~iSGah~NPavTla~~l~g 130 (306)
.++=+|||+.||+.++-.+..
T Consensus 7 ~~GGTGGHi~Pala~a~~l~~ 27 (352)
T PRK12446 7 TGGGSAGHVTPNLAIIPYLKE 27 (352)
T ss_pred EcCCcHHHHHHHHHHHHHHHh
Confidence 355689999999999988875
No 46
>PF09512 ThiW: Thiamine-precursor transporter protein (ThiW); InterPro: IPR012652 Levels of thiamine pyrophosphate (TPP) or thiamine regulate transcription or translation of a number of thiamine biosynthesis, salvage, or transport genes in a wide range of prokaryotes. The mechanism involves direct binding, with no protein involved, to a structural element called THI found in the untranslated upstream region of thiamine metabolism gene operons. This element is called a riboswitch and is seen also for other metabolites such as FMN and glycine. This protein family consists of proteins identified in operons controlled by the THI riboswitch and designated ThiW. The hydrophobic nature of this protein and reconstructed metabolic background suggests that this protein acts in transport of a thiazole precursor of thiamine.
Probab=20.39 E-value=4.9e+02 Score=21.73 Aligned_cols=26 Identities=23% Similarity=0.496 Sum_probs=19.3
Q ss_pred ccchhHHHHHHhhHHHHHHHHHHHHH
Q 040654 134 FTRAAIYILAQCVGGIFGALALEAVV 159 (306)
Q Consensus 134 ~~~~~~yi~aQ~lGa~~ga~~~~~~~ 159 (306)
+...+.+..+-+.|+++|..+.+.+.
T Consensus 123 ~~~v~~F~~St~~Ga~ig~~~l~~L~ 148 (150)
T PF09512_consen 123 FFFVPPFLISTLIGAIIGYILLKALK 148 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677778888888888887776653
Done!