Query 040654
Match_columns 306
No_of_seqs 250 out of 1583
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 16:55:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040654.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040654hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 100.0 5.9E-52 2E-56 383.3 20.7 227 49-299 42-270 (340)
2 3cn5_A Aquaporin; membrane pro 100.0 1.4E-52 4.8E-57 385.2 16.3 246 36-300 38-289 (304)
3 3llq_A Aquaporin Z 2; aquapori 100.0 3E-52 1E-56 374.5 16.0 229 55-300 26-255 (256)
4 3gd8_A Aquaporin-4; proton exc 100.0 3.6E-51 1.2E-55 362.1 18.4 219 57-299 2-222 (223)
5 2w2e_A AQY1, aquaporin, aquapo 100.0 1.3E-50 4.3E-55 369.0 20.3 221 56-303 42-269 (279)
6 2zz9_A Aquaporin-4; water tran 100.0 3.5E-50 1.2E-54 368.5 19.9 226 50-299 4-231 (301)
7 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 4.8E-50 1.7E-54 363.0 20.3 224 51-300 4-228 (266)
8 1ldf_A Glycerol uptake facilit 100.0 2.5E-50 8.4E-55 368.5 18.0 234 56-301 5-258 (281)
9 2o9g_A Aquaporin Z; integral m 100.0 1.5E-50 5.2E-55 360.7 15.3 226 58-300 4-232 (234)
10 1j4n_A Aquaporin 1; membrane p 100.0 4E-50 1.4E-54 364.9 17.8 226 51-300 3-235 (271)
11 2b6o_A Aquaporin-0, lens fiber 100.0 1.1E-49 3.7E-54 360.7 20.2 224 51-300 2-225 (263)
12 3c02_A Aquaglyceroporin; membr 100.0 8.6E-50 2.9E-54 360.7 12.6 228 56-300 7-244 (258)
13 2f2b_A Aquaporin AQPM; protein 100.0 1.9E-48 6.4E-53 349.9 17.7 222 57-299 3-245 (246)
14 2f2b_A Aquaporin AQPM; protein 99.6 9.3E-15 3.2E-19 130.7 9.7 99 57-160 142-245 (246)
15 2o9g_A Aquaporin Z; integral m 99.3 6.3E-12 2.2E-16 111.5 8.4 99 57-161 133-232 (234)
16 2b6o_A Aquaporin-0, lens fiber 99.3 8E-12 2.7E-16 112.6 8.8 100 57-161 126-225 (263)
17 3cn5_A Aquaporin; membrane pro 99.3 3.6E-12 1.2E-16 116.9 6.4 105 57-161 183-289 (304)
18 2w2e_A AQY1, aquaporin, aquapo 99.3 1.6E-11 5.5E-16 111.4 10.3 102 57-163 167-268 (279)
19 3llq_A Aquaporin Z 2; aquapori 99.3 7E-12 2.4E-16 112.2 7.3 97 57-159 156-253 (256)
20 3d9s_A Aquaporin-5, AQP-5; aqu 99.2 1.1E-11 3.9E-16 111.7 8.2 100 57-161 128-228 (266)
21 3iyz_A Aquaporin-4; water tran 99.2 2.5E-11 8.7E-16 112.1 9.1 100 57-161 172-271 (340)
22 3gd8_A Aquaporin-4; proton exc 99.2 3.9E-11 1.3E-15 105.6 8.7 98 57-159 124-221 (223)
23 2zz9_A Aquaporin-4; water tran 99.2 3.2E-11 1.1E-15 110.3 8.3 100 57-161 133-232 (301)
24 1ldf_A Glycerol uptake facilit 99.2 5.5E-11 1.9E-15 108.2 9.3 104 57-163 144-259 (281)
25 3c02_A Aquaglyceroporin; membr 99.2 4.2E-11 1.4E-15 107.7 7.1 103 59-164 135-247 (258)
26 1j4n_A Aquaporin 1; membrane p 99.1 8.1E-11 2.8E-15 106.5 7.2 98 59-161 138-235 (271)
27 3kcu_A Probable formate transp 80.6 26 0.00089 31.1 12.5 108 93-210 69-180 (285)
28 3kly_A Putative formate transp 64.2 59 0.002 28.7 10.6 108 93-210 68-179 (280)
29 4fc4_A Nitrite transporter NIR 55.1 1.1E+02 0.0036 26.7 11.5 110 93-210 59-169 (261)
30 3s2u_A UDP-N-acetylglucosamine 35.0 7.5 0.00026 35.3 -0.2 19 113-131 11-29 (365)
31 3tds_E Formate/nitrite transpo 28.0 1.3E+02 0.0045 26.2 6.7 109 93-210 65-175 (268)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=5.9e-52 Score=383.35 Aligned_cols=227 Identities=28% Similarity=0.504 Sum_probs=182.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHhhheeEEeccc--CCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHH
Q 040654 49 GFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQ--TDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAA 126 (306)
Q Consensus 49 ~~~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~--~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~ 126 (306)
..++.+++++||++++||+|||+|+|++++++++... +....+++.++++||+++++++|+++++||||+|||||+++
T Consensus 42 ~~~~~~~~~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal 121 (340)
T 3iyz_A 42 AFKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAM 121 (340)
T ss_pred hhhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHH
Confidence 3456667899999999999999999988877654321 12234678899999999999999999999999999999999
Q ss_pred HHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHH
Q 040654 127 ALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFL 206 (306)
Q Consensus 127 ~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~ 206 (306)
++.|+++|.+++.||++|++||++|+++++.++++.... .+.++.+.| +.+..++|+.|+++||+|+
T Consensus 122 ~l~G~~~~~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~-------~lg~~~~~~------~~s~~~~f~~E~i~Tf~Lv 188 (340)
T 3iyz_A 122 VCTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVG-------GLGVTTVHG------NLTAGHGLLVELIITFQLV 188 (340)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcC-------ceeeccCCC------ccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998765321 122222222 4688999999999999999
Q ss_pred HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHH
Q 040654 207 FASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIA 286 (306)
Q Consensus 207 ~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iG 286 (306)
++++.+ .|+++.... ...|+.||+.++ +...++. ++||++||||||||||++.+ .|+++||||+||++|
T Consensus 189 ~~Ila~-~d~~~~~~~--~~~pl~IGl~v~----i~~~~g~--~~TG~amNPARdlGPal~~~--~w~~~WVywvgPiiG 257 (340)
T 3iyz_A 189 FTIFAS-CDDKRTDVT--GSVALAIGFSVA----IGHLFAI--NYTGASMNPARSFGPAVIMG--NWENHWIYWVGPIIG 257 (340)
T ss_pred HHHHHh-hcCccCCcc--cchhhHHHHHHH----HHHHhcc--CCccccccHHHHHHHHHHcc--CCCcEeehhHHHHHH
Confidence 998754 555543221 234566666554 3344443 78999999999999999976 799999999999999
Q ss_pred HHHHHHHHHHccc
Q 040654 287 CVAFALYTKLIPS 299 (306)
Q Consensus 287 a~~a~l~~~~~~~ 299 (306)
+++++++|+++..
T Consensus 258 ailaallY~~l~~ 270 (340)
T 3iyz_A 258 AVLAGALYEYVFC 270 (340)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998753
No 2
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=1.4e-52 Score=385.21 Aligned_cols=246 Identities=27% Similarity=0.466 Sum_probs=187.0
Q ss_pred cccCCCCcchhccccccchhHHHHHHHHHHHHHHHHHHHhhheeEEecccC---CCCCCchHHHHHHHHHHHHHHHHhcc
Q 040654 36 EKKQNPSTWKKILGFEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQT---DTKTPNLVMSTLVAIIITILLIATFP 112 (306)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~---~~~~~~~~~al~~g~~v~~~i~~~~~ 112 (306)
.|+++++.+.+.++.+|+.+++++|++++||+||++|+|+++++++..... ....+++.+++++|+++++++|++++
T Consensus 38 ~~~~~~~~~~~~~~~~e~~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~ 117 (304)
T 3cn5_A 38 GKDYVDPPPAPFFDLGELKLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAG 117 (304)
T ss_dssp -----------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCccCCCcccccCccccccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeec
Confidence 467767777777888999999999999999999999999988766543211 22345678999999999999999999
Q ss_pred ccccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchh
Q 040654 113 ISGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTR 192 (306)
Q Consensus 113 iSGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~ 192 (306)
+||||+|||||+++++.|+++|.+++.||++|++||++|+++++.++++.+.... ++. +.+. .+.+..
T Consensus 118 iSGaHlNPAVTla~~l~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~--~g~------~~~~----~~~s~~ 185 (304)
T 3cn5_A 118 ISGGHINPAVTFGLFLARKVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFG--GGA------NSVA----LGYNKG 185 (304)
T ss_dssp TTCCCCSHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTT--TTC------CCCC----TTCCHH
T ss_pred cCCCccCcHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--Ccc------cccC----CCccHH
Confidence 9999999999999999999999999999999999999999999999998755431 111 1122 257889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccc--chhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhC-
Q 040654 193 QALWLEIICSFVFLFASVWMAFDSRQAKALG--RVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRG- 269 (306)
Q Consensus 193 ~~~~~E~i~T~~L~~~i~~~~~d~~~~~~~~--~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g- 269 (306)
++|+.|+++||+|+++++ ...|+++....+ +.+.|+.||+.+....+... ++||++||||||||||++.+
T Consensus 186 ~~f~~E~i~TfiLv~~Il-~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g------~~TG~amNPAR~~GPal~~~~ 258 (304)
T 3cn5_A 186 TALGAEIIGTFVLVYTVF-SATDPKRSARDSHVPILAPLPIGFAVFMVHLATI------PITGTGINPARSFGAAVIFNS 258 (304)
T ss_dssp HHHHHHHHHHHHHHHHHH-HTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHH------HHHSCCCCHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHh-heecCccCCCCcccccchHHHHHHHHHHHHHhcc------CCCccccChHHHHHHHHHHcc
Confidence 999999999999999987 566755432211 22567778887776655543 67889999999999999953
Q ss_pred CCCCCcceehhhhHHHHHHHHHHHHHHcccC
Q 040654 270 GHLWDRHWVFWAGPAIACVAFALYTKLIPSQ 300 (306)
Q Consensus 270 ~~~~~~~wvywv~P~iGa~~a~l~~~~~~~~ 300 (306)
+..|+++||||++|++|+++++++|+++...
T Consensus 259 ~~~w~~~WvywvgPiiGa~laa~~y~~l~~~ 289 (304)
T 3cn5_A 259 NKVWDDQWIFWVGPFIGAAVAAAYHQYVLRA 289 (304)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCcCceEEEeehHHHHHHHHHHHHHHHhCC
Confidence 2479999999999999999999999988543
No 3
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=3e-52 Score=374.50 Aligned_cols=229 Identities=28% Similarity=0.347 Sum_probs=181.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeEEecc-cCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccccc
Q 040654 55 SVKVWRASMAELLGTAVLVFALDTIVISSI-QTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITS 133 (306)
Q Consensus 55 ~~~~~r~~~aEfigT~~lv~~~~~~~~~~~-~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~ 133 (306)
+++++|++++||+||++|+|+++++++... .++...+++.++++||+++++++|+++++||||+|||||+++++.|+++
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 105 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFP 105 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCC
Confidence 467899999999999999998887654322 2223346788999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHh
Q 040654 134 FTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMA 213 (306)
Q Consensus 134 ~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~ 213 (306)
|.+++.||++|++||++|+++++.++++...-.. .+......+++.|. +.+..++|+.|+++||+|+++++. .
T Consensus 106 ~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~-~~~~~~~~~~t~p~-----~~s~~~~f~~E~i~Tf~Lv~~il~-~ 178 (256)
T 3llq_A 106 ASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDL-GGFASNGYGEHSPG-----GYSLVSALLIEIILTAFFLIVILG-S 178 (256)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCC-TTTTCCCCGGGSTT-----CCCHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccc-cccccccccccCCc-----ccCHHHHHHHHHHHHHHHHHHHHH-h
Confidence 9999999999999999999999999864321000 01111233455664 368899999999999999998764 5
Q ss_pred hcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHH
Q 040654 214 FDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALY 293 (306)
Q Consensus 214 ~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~ 293 (306)
.|+|+.+ ...|+.||+.+....+... ++||++||||||||||++.|+..|+++||||+||++|+++++++
T Consensus 179 ~d~~~~~----~~~pl~IGl~v~~i~~~~g------~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~ 248 (256)
T 3llq_A 179 THGRVPA----GFAPIAIGLALTLIHLISI------PVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVI 248 (256)
T ss_dssp HSTTSCT----TCHHHHHHHHHHHHHHHHH------HHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCCCCc----cchhHHHHHHHHHHHHHhc------cccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHH
Confidence 6666432 2457778877776555443 56788999999999999987556779999999999999999999
Q ss_pred HHHcccC
Q 040654 294 TKLIPSQ 300 (306)
Q Consensus 294 ~~~~~~~ 300 (306)
|+++.++
T Consensus 249 y~~l~~~ 255 (256)
T 3llq_A 249 WKLFGEK 255 (256)
T ss_dssp HHHHTSC
T ss_pred HHHhccC
Confidence 9998643
No 4
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.6e-51 Score=362.07 Aligned_cols=219 Identities=29% Similarity=0.503 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEeccc--CCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQ--TDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSF 134 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~--~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~ 134 (306)
++||++++||+||++|+|++++++++... +....+++.+++++|+++++.+++++++||||+|||||+++++.|+++|
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 81 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCH
Confidence 47999999999999999988877654321 2223467899999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 040654 135 TRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAF 214 (306)
Q Consensus 135 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~ 214 (306)
.+++.|+++|++||++|+.+++.+++++.... .+ .+.+.| +.+..++++.|+++||+|+++++.. .
T Consensus 82 ~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~--lg-----~~~~~~------~~s~~~~~~~E~i~Tf~Lv~~i~~~-~ 147 (223)
T 3gd8_A 82 AKSVFYIAAQCLGAIIGAGILYLVTPPSVVGG--LG-----VTMVHG------NLTAGHGLLVELIITFQLVFTIFAS-C 147 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTT--TT-----CCCCCT------TSCHHHHHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccc--ee-----eccCCC------ccCHHHHHHHHHHHHHHHHHHHHHH-h
Confidence 99999999999999999999999988764321 11 122222 4688999999999999999988754 5
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHH
Q 040654 215 DSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYT 294 (306)
Q Consensus 215 d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~ 294 (306)
|+++.... ...|+.||+.+++... .+. ++||++||||||||||++.+ +|+++||||++|++|+++++++|
T Consensus 148 ~~~~~~~~--~~~pl~iGl~v~~~~~----~g~--~~TG~a~NPAR~~GP~l~~~--~w~~~Wvy~vgP~~Ga~la~~~y 217 (223)
T 3gd8_A 148 DSKRTDVT--GSIALAIGFSVAIGHL----FAI--NYTGASMNPARSFGPAVIMG--NWENHWIYWVGPIIGAVLAGGLY 217 (223)
T ss_dssp CTTCSCCC--SCHHHHHHHHHHHHHH----HHH--HHHCCCCCHHHHHHHHHHHT--CCTTTTHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcc--CCccHHHHHHHHHHHH----hcc--CCccccccHHHHHHHHHHhc--CCCcEEeehhHHHHHHHHHHHHH
Confidence 65543322 2346677776653333 332 57899999999999999986 79999999999999999999999
Q ss_pred HHccc
Q 040654 295 KLIPS 299 (306)
Q Consensus 295 ~~~~~ 299 (306)
|++..
T Consensus 218 ~~~~~ 222 (223)
T 3gd8_A 218 EYVFC 222 (223)
T ss_dssp HHTTC
T ss_pred HHHcC
Confidence 98753
No 5
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=1.3e-50 Score=368.96 Aligned_cols=221 Identities=24% Similarity=0.385 Sum_probs=177.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEE-ecc-c-----CCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHH
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVI-SSI-Q-----TDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAAL 128 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~-~~~-~-----~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l 128 (306)
++.+|++++||+||++|+|+++++.. ... . ......++.+++++|+++++++|+++++||||+|||||+++++
T Consensus 42 ~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~ 121 (279)
T 2w2e_A 42 RNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVL 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHH
Confidence 35789999999999999998776421 111 1 1111245689999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHH
Q 040654 129 TGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFA 208 (306)
Q Consensus 129 ~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~ 208 (306)
.|+++|.+++.|+++|++||++|+++++.++++... +++.|.. +.+..++|+.|+++||+|+++
T Consensus 122 ~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~------------~~t~~~~----~~s~~~~~~~E~i~Tf~Lv~~ 185 (279)
T 2w2e_A 122 ARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA------------FANALGG----GASRTRGLFLEAFGTAILCLT 185 (279)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC------------CSCCCCT----TCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce------------eeccCCc----cccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999875431 2334543 578899999999999999999
Q ss_pred HHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHH
Q 040654 209 SVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACV 288 (306)
Q Consensus 209 i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~ 288 (306)
++....++++. ....|+.||+.+....+... ++||++||||||||||++.+ ..|+|+||||+||++|++
T Consensus 186 Il~~~~~~~~~----~~~~pl~IGl~v~~~~l~~g------~~TG~s~NPAR~~GPal~~~-~~~~~~WVy~vgPiiGa~ 254 (279)
T 2w2e_A 186 VLMLAVEKHRA----TWFAPFVIGIALLIAHLICI------YYTGAGLNPARSFGPAVAAR-SFPNYHWIYWLGPILGAF 254 (279)
T ss_dssp HHHHTTSCSTT----GGGHHHHHHHHHHHHHHHHH------HHHCCCCSHHHHHHHHHHHT-CCCTTTTHHHHHHHHHHH
T ss_pred HHHHccCCCCC----cCcHHHHHHHHHHHHHHhcc------cccccccChHHHHHHHHHhc-cchhhhhHHHHHHHHHHH
Confidence 87665554432 23567777777765554432 67899999999999999985 245789999999999999
Q ss_pred HHHHHHHHcccCcCC
Q 040654 289 AFALYTKLIPSQNLH 303 (306)
Q Consensus 289 ~a~l~~~~~~~~~~~ 303 (306)
+++++|+++...+.+
T Consensus 255 la~~ly~~l~~~~~~ 269 (279)
T 2w2e_A 255 LAYSIWQMWKWLNYQ 269 (279)
T ss_dssp HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHccCCC
Confidence 999999998654443
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=3.5e-50 Score=368.51 Aligned_cols=226 Identities=29% Similarity=0.528 Sum_probs=180.6
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhheeEEecccC--CCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHH
Q 040654 50 FEDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQT--DTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAA 127 (306)
Q Consensus 50 ~~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~--~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~ 127 (306)
.+|..++++||++++||+|||+|+|+++++++..... ....+++.+++++|+++++++++++++||||+|||||++++
T Consensus 4 ~~~~~~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~ 83 (301)
T 2zz9_A 4 FKGVWTQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMV 83 (301)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHH
Confidence 3455678899999999999999999988776543221 22345678999999999999999999999999999999999
Q ss_pred HcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHH
Q 040654 128 LTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLF 207 (306)
Q Consensus 128 l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~ 207 (306)
+.|+++|.+++.||++|++||++|+++++.++++..... .+ .+ .|.. +.+..++|+.|+++||+|++
T Consensus 84 ~~g~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~--~g-----~~--~~~~----~~s~~~~f~~E~i~Tf~Lv~ 150 (301)
T 2zz9_A 84 CTRKISIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGG--LG-----VT--TVHG----NLTAGHGLLVELIITFQLVF 150 (301)
T ss_dssp HTSSSCTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGT--SS-----CC--CCCS----SCCHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCc--ee-----ee--cCCc----ccchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988653221 11 11 2222 57889999999999999999
Q ss_pred HHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHH
Q 040654 208 ASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIAC 287 (306)
Q Consensus 208 ~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa 287 (306)
+++.. .|+++... ....|+.||+.+++.... +. ++||++||||||||||++.+ .|.++||||+||++|+
T Consensus 151 ~Il~~-~d~~~~~~--~~~~pl~IGl~v~i~~~~----g~--~~TG~a~NPAR~~GPal~~~--~w~~~WVy~vgPiiGa 219 (301)
T 2zz9_A 151 TIFAS-CDDKRTDV--TGSVALAIGFSVAIGHLF----AI--NYTGASMNPARSFGPAVIMG--NWENHWIYWVGPIIGA 219 (301)
T ss_dssp HHHHH-SCSSSSCC--SSCHHHHHHHHHHHHHHH----HH--HHHCCCCCHHHHHHHHHHHC--CCTTTTHHHHHHHHHH
T ss_pred HHHHh-cCCCCCCc--cchHhHHHHHHHHHHHHH----hc--CCcccccCcHHHHHHHHHhC--CCcceeeeeeHHHHHH
Confidence 98754 56554332 224567777766543333 33 67899999999999999986 7999999999999999
Q ss_pred HHHHHHHHHccc
Q 040654 288 VAFALYTKLIPS 299 (306)
Q Consensus 288 ~~a~l~~~~~~~ 299 (306)
++++++|+++..
T Consensus 220 ilaa~ly~~l~~ 231 (301)
T 2zz9_A 220 VLAGALYEYVFC 231 (301)
T ss_dssp HHHHHHHHTTTC
T ss_pred HHHHHHHHHHhC
Confidence 999999998853
No 7
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-50 Score=363.03 Aligned_cols=224 Identities=30% Similarity=0.428 Sum_probs=182.9
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcc
Q 040654 51 EDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTG 130 (306)
Q Consensus 51 ~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g 130 (306)
+|+++++++|++++||+||++|+|++++++... .+...+++.+++++|+++++++++++++||||+|||||+++++.|
T Consensus 4 ~e~~~~~~~r~~laEfiGT~~lv~~g~g~~~~~--~~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g 81 (266)
T 3d9s_A 4 KEVCSVAFLKAVFAEFLATLIFVFFGLGSALKW--PSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGN 81 (266)
T ss_dssp HHHTSHHHHHHHHHHHHHHHHHHHHHHHHHSCC--SSSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTS
T ss_pred hhhhChHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhc
Confidence 456678899999999999999999888765421 222346788999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 131 ITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 131 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
+++|.+++.||++|++||++|+++++.+++++.... .+ . +.|.. +.+..++|+.|+++||+|+++++
T Consensus 82 ~~~~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~--~g-----~--~~~~~----~~s~~~~~~~E~i~Tf~Lv~~il 148 (266)
T 3d9s_A 82 QISLLRAFFYVAAQLVGAIAGAGILYGVAPLNARGN--LA-----V--NALNN----NTTQGQAMVVELILTFQLALCIF 148 (266)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTT--TT-----C--CCCCT----TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHccccccCc--ee-----e--ccCCc----cccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999997653221 11 1 12222 56889999999999999999987
Q ss_pred HHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCc-ceehhhhHHHHHHH
Q 040654 211 WMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDR-HWVFWAGPAIACVA 289 (306)
Q Consensus 211 ~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~-~wvywv~P~iGa~~ 289 (306)
.. .|+++... ....|+.||+.+++..+.+. ++||++||||||||||++.+ .|++ +||||++|++|+++
T Consensus 149 ~~-~d~~~~~~--~~~~pl~IGl~v~~~~~~~g------~~TG~a~NPAR~~GPal~~~--~~~~~~Wvy~vgP~~Ga~l 217 (266)
T 3d9s_A 149 AS-TDSRRTSP--VGSPALSIGLSVTLGHLVGI------YFTGCSMNPARSFGPAVVMN--RFSPAHWVFWVGPIVGAVL 217 (266)
T ss_dssp HH-HCTTCCSC--CCCHHHHHHHHHHHHHHHHH------HHHSCCSCHHHHHHHHHHHT--CCCTTHHHHHHHHHHHHHH
T ss_pred HH-hcccCCCc--cchHHHHHHHHHHHHHHHhh------ccccccccHHHHHHHHHHcC--CcccCEeeeehHHHHHHHH
Confidence 65 56655322 22467777777665544433 67889999999999999986 7988 99999999999999
Q ss_pred HHHHHHHcccC
Q 040654 290 FALYTKLIPSQ 300 (306)
Q Consensus 290 a~l~~~~~~~~ 300 (306)
++++|+++..+
T Consensus 218 a~~~y~~l~~~ 228 (266)
T 3d9s_A 218 AAILYFYLLFP 228 (266)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHhCC
Confidence 99999988543
No 8
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=2.5e-50 Score=368.46 Aligned_cols=234 Identities=18% Similarity=0.220 Sum_probs=184.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccccccc
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFT 135 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 135 (306)
++++|++++||+|||+|+|++++++.....++.+.+.+.+++++|+++++++|+++++||||+|||||+++++.|+++|.
T Consensus 5 ~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 84 (281)
T 1ldf_A 5 STLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKR 84 (281)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHH
Confidence 45789999999999999998887654433333333455699999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhhhhhhhcc----CCc-----ceeeeeccCCCCCcccccchhHHHHHHHHHHHHHH
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTKKIAHNFS----LGG-----CTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFL 206 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~----~g~-----~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~ 206 (306)
+++.||++|++||++|+++++.++++.+.+... ..+ .+.+++++.|.. +.+..++|+.|+++||+|+
T Consensus 85 ~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~----~~s~~~~~~~E~i~Tf~Lv 160 (281)
T 1ldf_A 85 KVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNP----HINFVQAFAVEMVITAILM 160 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCT----TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCc----cccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887544211 011 123456677765 5789999999999999999
Q ss_pred HHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHh-----CCCC------CCc
Q 040654 207 FASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVR-----GGHL------WDR 275 (306)
Q Consensus 207 ~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~-----g~~~------~~~ 275 (306)
++++.. .|+++... .....|+.||+.+....+... ++||++||||||||||+++ |++. |.|
T Consensus 161 ~~il~~-~d~~~~~~-~~~~~pl~IGl~v~~~~~~~g------~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~ 232 (281)
T 1ldf_A 161 GLILAL-TDDGNGVP-RGPLAPLLIGLLIAVIGASMG------PLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPY 232 (281)
T ss_dssp HHHHHH-HCTTSSSC-CGGGHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCT
T ss_pred HHHHHH-hccCCCCc-ccchHHHHHHHHHHHHHHhcc------cccccccCcHhhHHHHHHHHhcccccccccccCCCce
Confidence 998754 56554321 223567777777765555443 6788999999999999997 2222 238
Q ss_pred ceehhhhHHHHHHHHHHHHHHcccCc
Q 040654 276 HWVFWAGPAIACVAFALYTKLIPSQN 301 (306)
Q Consensus 276 ~wvywv~P~iGa~~a~l~~~~~~~~~ 301 (306)
+||||++|++|+++++++|+++..++
T Consensus 233 ~WVy~vgPi~Ga~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 233 FLVPLFGPIVGAIVGAFAYRKLIGRH 258 (281)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTGGG
T ss_pred eeHHhHHHHHHHHHHHHHHHHHhCcc
Confidence 99999999999999999999886443
No 9
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=1.5e-50 Score=360.71 Aligned_cols=226 Identities=25% Similarity=0.311 Sum_probs=181.0
Q ss_pred HHHHHHHHHHHHHHHHHhhheeEEecccC-CCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 58 VWRASMAELLGTAVLVFALDTIVISSIQT-DTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 58 ~~r~~~aEfigT~~lv~~~~~~~~~~~~~-~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
++|++++||+||++|+|++++++...... +...+++.+++++|+++++.+|+++++||||+|||||+++++.|+++|++
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 83 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE 83 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCHHH
Confidence 68999999999999999887765333221 12335778999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhhhh--hhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVTKKI--AHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAF 214 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~~~~--~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~ 214 (306)
++.|+++|++||++|+.+++.++++.. +...+ +......+++.|. +.+..++|+.|+++|++|+++++. ..
T Consensus 84 ~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~-~~~~~~~~~t~p~-----~~~~~~~~~~E~i~T~~Lv~~i~~-~~ 156 (234)
T 2o9g_A 84 VVGYVIAQVVGGIVAAALLYLIASGKTGFDAAAS-GFASNGYGEHSPG-----GYSMLSALVVELVLSAGFLLVIHG-AT 156 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHH-CTTCCCCGGGSTT-----CCCHHHHHHHHHHHHHHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCccccccccc-ccccceeeecCCC-----ccchHHHHHHHHHHHHHHHHHHHH-hc
Confidence 999999999999999999999997542 11100 1111223445565 368899999999999999998875 45
Q ss_pred cccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHHHHHH
Q 040654 215 DSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAFALYT 294 (306)
Q Consensus 215 d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a~l~~ 294 (306)
|+|+. ....|+.||+.+....+... ++||++||||||||||+++++..|+|+||||++|++|+++++++|
T Consensus 157 d~~~~----~~~~pl~IGl~v~~~~~~~g------~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y 226 (234)
T 2o9g_A 157 DKFAP----AGFAPIAIGLACTLIHLISI------PVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIY 226 (234)
T ss_dssp STTSC----TTCHHHHHHHHHHHHHHHHH------HHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCc----cchHHHHHHHHHHHHHHHcc------CCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHH
Confidence 65432 22567778877776655543 677889999999999999976567799999999999999999999
Q ss_pred HHcccC
Q 040654 295 KLIPSQ 300 (306)
Q Consensus 295 ~~~~~~ 300 (306)
|++..+
T Consensus 227 ~~~~~~ 232 (234)
T 2o9g_A 227 RTLLEK 232 (234)
T ss_dssp HHHTSC
T ss_pred HHHcCC
Confidence 987543
No 10
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=4e-50 Score=364.90 Aligned_cols=226 Identities=27% Similarity=0.473 Sum_probs=180.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhheeEEecc----cC---CCCCCchHHHHHHHHHHHHHHHHhccccccccChHHH
Q 040654 51 EDIFSVKVWRASMAELLGTAVLVFALDTIVISSI----QT---DTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVS 123 (306)
Q Consensus 51 ~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~----~~---~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavT 123 (306)
+|+++++++|++++||+||++|+|+++++++... .+ ....+++.+++++|+++++++|+++++||||+|||||
T Consensus 3 ~e~~~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVT 82 (271)
T 1j4n_A 3 SEFKKKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVT 82 (271)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHH
Confidence 4566788999999999999999998887654321 11 1223578899999999999999999999999999999
Q ss_pred HHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHH
Q 040654 124 FAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSF 203 (306)
Q Consensus 124 la~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~ 203 (306)
+++++.|+++|.+++.||++|++||++|+++++.++++..... .+ .+++.| +++..++++.|+++||
T Consensus 83 la~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~--~g-----~~~~~~------~~~~~~~~~~E~i~T~ 149 (271)
T 1j4n_A 83 LGLLLSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNS--LG-----LNALAP------GVNSGQGLGIEIIGTL 149 (271)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCC--TT-----CCCCCT------TCCTTGGGHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc--cc-----cccCCC------ccchHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999986532111 11 112223 4677899999999999
Q ss_pred HHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhH
Q 040654 204 VFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGP 283 (306)
Q Consensus 204 ~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P 283 (306)
+|+++++. ..|+++... ....|+.||+.+.+....+ . ++||++||||||||||++++ .|+++||||+||
T Consensus 150 ~Lv~~i~~-~~d~~~~~~--~~~~pl~IGl~v~~~~~~~----~--~~TG~a~NPAR~~Gpal~~~--~~~~~wv~~vgP 218 (271)
T 1j4n_A 150 QLVLCVLA-TTDRRRRDL--GGSGPLAIGFSVALGHLLA----I--DYTGCGINPARSFGSSVITH--NFQDHWIFWVGP 218 (271)
T ss_dssp HHHHHHHH-HTCSSCCCC--CSCHHHHHHHHHHHHHHHH----H--HHHCCCCCHHHHHHHHHHTT--CCTTTTHHHHHH
T ss_pred HHHHHHHh-hccccCCCc--cccHHHHHHHHHHHHHHhc----c--CCCccccChHHHHHHHHHhC--CCcceeHHHHHH
Confidence 99998865 456554321 2346777777765443332 2 57888999999999999975 799999999999
Q ss_pred HHHHHHHHHHHHHcccC
Q 040654 284 AIACVAFALYTKLIPSQ 300 (306)
Q Consensus 284 ~iGa~~a~l~~~~~~~~ 300 (306)
++|+++++++|+++...
T Consensus 219 ~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 219 FIGAALAVLIYDFILAP 235 (271)
T ss_dssp HHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHhCC
Confidence 99999999999988544
No 11
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=1.1e-49 Score=360.65 Aligned_cols=224 Identities=29% Similarity=0.443 Sum_probs=180.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcc
Q 040654 51 EDIFSVKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTG 130 (306)
Q Consensus 51 ~~~~~~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g 130 (306)
+|+++.+++|++++||+|||+|+|+++++.... .+...+++.+++++|+++++.+++++++||+|+|||||+++++.|
T Consensus 2 ~e~~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~--~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g 79 (263)
T 2b6o_A 2 WELRSASFWRAIFAEFFATLFYVFFGLGASLRW--APGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGS 79 (263)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhc
Confidence 356678899999999999999999887765322 222335678999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 131 ITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 131 ~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
+++|.+++.|+++|++||++|+.+++.+++++.... +..+.+.| +++..++|+.|+++||+|+++++
T Consensus 80 ~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~-------~~~~~~~~------~~s~~~~~~~E~i~Tf~Lv~~il 146 (263)
T 2b6o_A 80 QMSLLRAICYVVAQLLGAVAGAAVLYSVTPPAVRGN-------LALNTLHP------GVSVGQATIVEIFLTLQFVLCIF 146 (263)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTCSS-------CSCCCCCT------TCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccccc-------cccccCCc------cccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998654221 12222223 46889999999999999999987
Q ss_pred HHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHhCCCCCCcceehhhhHHHHHHHH
Q 040654 211 WMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVRGGHLWDRHWVFWAGPAIACVAF 290 (306)
Q Consensus 211 ~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~g~~~~~~~wvywv~P~iGa~~a 290 (306)
.+ .|+++... ....|+.||+.+....+. ++ ++||++||||||||||++.+ +|+++||||+||++|++++
T Consensus 147 ~~-~d~~~~~~--~~~~pl~IGl~v~~~~~~----~g--~~TG~a~NPAR~~GPal~~~--~~~~~Wvy~vgP~~Ga~la 215 (263)
T 2b6o_A 147 AT-YDERRNGR--LGSVALAVGFSLTLGHLF----GM--YYTGAGMNPARSFAPAILTR--NFTNHWVYWVGPVIGAGLG 215 (263)
T ss_dssp HH-SCTTSCSS--CCCHHHHHHHHHHHHHHH----HT--TTSTTCCCHHHHHHHHHHHT--CCTTCTHHHHHHHHHHHHH
T ss_pred HH-hcccCCCC--cccHHHHHHHHHHHHHHh----cc--CCCcccccHHHHHHHHHHcC--CccceeHHHHHHHHHHHHH
Confidence 54 66555322 224566677666544333 33 88999999999999999986 8999999999999999999
Q ss_pred HHHHHHcccC
Q 040654 291 ALYTKLIPSQ 300 (306)
Q Consensus 291 ~l~~~~~~~~ 300 (306)
+++|+++..+
T Consensus 216 ~~~y~~l~~~ 225 (263)
T 2b6o_A 216 SLLYDFLLFP 225 (263)
T ss_dssp HHHHHTTTSC
T ss_pred HHHHHHHhCC
Confidence 9999988543
No 12
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=8.6e-50 Score=360.69 Aligned_cols=228 Identities=18% Similarity=0.239 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccccccc
Q 040654 56 VKVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFT 135 (306)
Q Consensus 56 ~~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~ 135 (306)
++++|++++||+||++|+|++++++......+...+++.+++++|+++++.+++++++||||+|||||+++++.|+++|+
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 86 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLK 86 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHH
Confidence 45789999999999999998887654332222245678899999999999999999999999999999999999999999
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCc-ceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHhh
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGG-CTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASVWMAF 214 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~-~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~~~~~ 214 (306)
+++.|+++|++||++|+++++.++++++.+..+... ...++++ ..+..++++.|+++||+|+++++.. .
T Consensus 87 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~---------t~p~~~~~~~E~i~Tf~Lv~~i~~~-~ 156 (258)
T 3c02_A 87 KIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNP---------SISLTGAFFNELILTGILLLVILVV-V 156 (258)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCT---------TSCHHHHHHHHHHHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCC---------CCchHHHHHHHHHHHHHHHHHHHHH-h
Confidence 999999999999999999999999987664321110 1112222 2345569999999999999998754 5
Q ss_pred cccccccccchhH-HHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHHh----CCCCC----CcceehhhhHHH
Q 040654 215 DSRQAKALGRVTV-CIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALVR----GGHLW----DRHWVFWAGPAI 285 (306)
Q Consensus 215 d~~~~~~~~~~~~-~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~~----g~~~~----~~~wvywv~P~i 285 (306)
|+|+.. ...... |+.||+.+....+... ++||++||||||||||+++ |++.| +|+||||++|++
T Consensus 157 d~~~~~-~~~~~~~pl~IGl~v~~~~~~~g------~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~ 229 (258)
T 3c02_A 157 DENICG-KFHILKLSSVVGLIILCIGITFG------GNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCV 229 (258)
T ss_dssp CHHHHC-SCCHHHHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHH
T ss_pred CcccCC-cccccHHHHHHHHHHHHHHHhcc------CccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHH
Confidence 655431 123345 6667776665554433 6788999999999999997 44445 679999999999
Q ss_pred HHHHHHHHHHHcccC
Q 040654 286 ACVAFALYTKLIPSQ 300 (306)
Q Consensus 286 Ga~~a~l~~~~~~~~ 300 (306)
|+++++++||++..+
T Consensus 230 Ga~la~~~y~~~~~~ 244 (258)
T 3c02_A 230 GSVVFCQFYDKVICP 244 (258)
T ss_dssp HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999988544
No 13
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=1.9e-48 Score=349.95 Aligned_cols=222 Identities=25% Similarity=0.345 Sum_probs=178.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecc--cC----------C-----CCCCchHHHHHHHHHHHHHHHHhccccccccC
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSI--QT----------D-----TKTPNLVMSTLVAIIITILLIATFPISGGHIN 119 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~--~~----------~-----~~~~~~~~al~~g~~v~~~i~~~~~iSGah~N 119 (306)
+++|++++||+||++|+|+++++++... .+ + ...+++.+++++|+++++.+|+++++||||+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 3689999999999999998887654322 11 0 11123569999999999999999999999999
Q ss_pred hHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCcceeeeeccCCCCCcccccchhHHHHHHH
Q 040654 120 PLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGGCTLNVVVPGPDGPVEIGLGTRQALWLEI 199 (306)
Q Consensus 120 PavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~ 199 (306)
||||+++++.|+++|++++.|+++|++||++|+.+++.+++++.... ..++++.|.. +.+..++++.|+
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~-------~~~~~t~p~~----~~~~~~~~~~E~ 151 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATV-------GGLGATAPFP----GISYWQAMLAEV 151 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHT-------TGGGCCCCCT----TCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhc-------ceeeeccCcc----ccchHHHHHHHH
Confidence 99999999999999999999999999999999999999998743221 1223456643 578899999999
Q ss_pred HHHHHHHHHHHHHhhcccccccccchhHHHHHHHHHHHHHHHHHhhhcCCCCCCCcccccchHHHHHH--h--CCCCCCc
Q 040654 200 ICSFVFLFASVWMAFDSRQAKALGRVTVCIVIGTVLGLLVFVSTTVTAQKGYAGAGLNPARCLGPALV--R--GGHLWDR 275 (306)
Q Consensus 200 i~T~~L~~~i~~~~~d~~~~~~~~~~~~~~~igl~vg~~v~~~~~~~~~~~~tG~~~NPAr~lgp~l~--~--g~~~~~~ 275 (306)
++|++|+++++....|+++. ....|+.+|+.+...++... ++||++||||||||||++ . +.+.|+|
T Consensus 152 i~Tf~Lv~~i~~~~~~~~~~----~~~~pl~iGl~v~~~~~~~g------~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~ 221 (246)
T 2f2b_A 152 VGTFLLMITIMGIAVDERAP----KGFAGIIIGLTVAGIITTLG------NISGSSLNPARTFGPYLNDMIFAGTDLWNY 221 (246)
T ss_dssp HHHHHHHHHHHHHTTSTTSC----TTCHHHHHHHHHHHHHHHHH------HHHCCCCCHHHHHHHHHHHHHHHCCCCGGG
T ss_pred HHHHHHHheeeEEecCCCCC----CceeeHHHHHHHHHHHhccc------ccCCCccCHHHHHHHHHHHHHcCCCCCcce
Confidence 99999999987655555442 22456777777766555543 678999999999999993 3 3568999
Q ss_pred ceehhhhHHHHHHHHHHHHHHccc
Q 040654 276 HWVFWAGPAIACVAFALYTKLIPS 299 (306)
Q Consensus 276 ~wvywv~P~iGa~~a~l~~~~~~~ 299 (306)
.|+||++|++|+++++++||++.+
T Consensus 222 ~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 222 YSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEeeeHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999998754
No 14
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.55 E-value=9.3e-15 Score=130.74 Aligned_cols=99 Identities=23% Similarity=0.494 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHH-----ccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAAL-----TGI 131 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l-----~g~ 131 (306)
+.++.++.|+++||+|++.+.+..... +.+....++.+|+.++...++.+++||+|+|||+|+++.+ -++
T Consensus 142 ~~~~~~~~E~i~Tf~Lv~~i~~~~~~~-----~~~~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~ 216 (246)
T 2f2b_A 142 SYWQAMLAEVVGTFLLMITIMGIAVDE-----RAPKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGT 216 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTST-----TSCTTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHHHHHHHheeeEEecCC-----CCCCceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCC
Confidence 467899999999999999766532111 1112357889999999999999999999999999999998 335
Q ss_pred ccccchhHHHHHHhhHHHHHHHHHHHHHh
Q 040654 132 TSFTRAAIYILAQCVGGIFGALALEAVVT 160 (306)
Q Consensus 132 ~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~ 160 (306)
..|.+.++||++|++|+++|+++++.+++
T Consensus 217 ~~w~~~~vy~vap~~Ga~laa~~y~~l~~ 245 (246)
T 2f2b_A 217 DLWNYYSIYVIGPIVGAVLAALTYQYLTS 245 (246)
T ss_dssp CCGGGTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCcceEEEeeeHHHHHHHHHHHHHHHHcC
Confidence 67889999999999999999998877653
No 15
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.28 E-value=6.3e-12 Score=111.47 Aligned_cols=99 Identities=19% Similarity=0.307 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcc-ccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTG-ITSFT 135 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g-~~~~~ 135 (306)
+.++.++.|+++||+|++...... .+ +.+....++.+|+.++...+..++.||+.+|||+++++.+.. ...|.
T Consensus 133 ~~~~~~~~E~i~T~~Lv~~i~~~~--d~----~~~~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~ 206 (234)
T 2o9g_A 133 SMLSALVVELVLSAGFLLVIHGAT--DK----FAPAGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALE 206 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT--ST----TSCTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc--CC----CCccchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCc
Confidence 467899999999999999766431 11 112235778999999999999999999999999999999874 45677
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 136 RAAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
..|+||++|++|+++|+++++.++.+
T Consensus 207 ~~Wv~~vgP~~Ga~la~~~y~~~~~~ 232 (234)
T 2o9g_A 207 QLWFFWVVPIVGGIIGGLIYRTLLEK 232 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred eeeeeehHHhHHHHHHHHHHHHHcCC
Confidence 99999999999999999998877543
No 16
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.27 E-value=8e-12 Score=112.59 Aligned_cols=100 Identities=20% Similarity=0.257 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+..+.++.|+++||+|++...... ...+. ......++.+|+.++...++.++.||+.+|||+++++.+... .|..
T Consensus 126 s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~~--~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~ 200 (263)
T 2b6o_A 126 SVGQATIVEIFLTLQFVLCIFATY--DERRN--GRLGSVALAVGFSLTLGHLFGMYYTGAGMNPARSFAPAILTR-NFTN 200 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHS--CTTSC--SSCCCHHHHHHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHT-CCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh--cccCC--CCcccHHHHHHHHHHHHHHhccCCCcccccHHHHHHHHHHcC-Cccc
Confidence 357899999999999999766441 11111 112246788999999999999999999999999999999876 7899
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
+|+||++|++|+++|+++++.++.+
T Consensus 201 ~Wvy~vgP~~Ga~la~~~y~~l~~~ 225 (263)
T 2b6o_A 201 HWVYWVGPVIGAGLGSLLYDFLLFP 225 (263)
T ss_dssp CTHHHHHHHHHHHHHHHHHHTTTSC
T ss_pred eeHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998877653
No 17
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.27 E-value=3.6e-12 Score=116.85 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHc--ccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALT--GITSF 134 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~--g~~~~ 134 (306)
+.++.++.|+++||+|++.+..+.-..+...........++.+|+.+++..++.++.||+.+|||++++..+. +...|
T Consensus 183 s~~~~f~~E~i~TfiLv~~Il~~~d~~~~~~~~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w 262 (304)
T 3cn5_A 183 NKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVW 262 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTEEEEEESTTSCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhheecCccCCCCcccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCc
Confidence 4578999999999999997764432111111110112467899999999999999999999999999999997 23478
Q ss_pred cchhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 135 TRAAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 135 ~~~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
...|+||++|++|+++|++++..++.+
T Consensus 263 ~~~WvywvgPiiGa~laa~~y~~l~~~ 289 (304)
T 3cn5_A 263 DDQWIFWVGPFIGAAVAAAYHQYVLRA 289 (304)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhCC
Confidence 899999999999999999988776553
No 18
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.26 E-value=1.6e-11 Score=111.38 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++.++.|+++||+|++........ .+.+....++.+|+.++...++.++.||+.+|||++++..+....-+..
T Consensus 167 s~~~~~~~E~i~Tf~Lv~~Il~~~~~-----~~~~~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~ 241 (279)
T 2w2e_A 167 SRTRGLFLEAFGTAILCLTVLMLAVE-----KHRATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNY 241 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTS-----CSTTGGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHccC-----CCCCcCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhh
Confidence 35788999999999999976543211 1112235788999999999999999999999999999999988644567
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhhhh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVTKKI 163 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~~~~ 163 (306)
.|+||++|++|+++|+++++.+...+.
T Consensus 242 ~WVy~vgPiiGa~la~~ly~~l~~~~~ 268 (279)
T 2w2e_A 242 HWIYWLGPILGAFLAYSIWQMWKWLNY 268 (279)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999888866543
No 19
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.25 E-value=7e-12 Score=112.24 Aligned_cols=97 Identities=21% Similarity=0.294 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHc-cccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALT-GITSFT 135 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~-g~~~~~ 135 (306)
+.++.++.|+++||+|+++...+. ... .+....++.+|+.++...++.++.||+.+|||+++++.+. +...|.
T Consensus 156 s~~~~f~~E~i~Tf~Lv~~il~~~--d~~----~~~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~ 229 (256)
T 3llq_A 156 SLVSALLIEIILTAFFLIVILGST--HGR----VPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQ 229 (256)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--STT----SCTTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhc--CCC----CCccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCccc
Confidence 467899999999999999765431 111 1123567899999999999999999999999999999986 445677
Q ss_pred chhHHHHHHhhHHHHHHHHHHHHH
Q 040654 136 RAAIYILAQCVGGIFGALALEAVV 159 (306)
Q Consensus 136 ~~~~yi~aQ~lGa~~ga~~~~~~~ 159 (306)
..|+||++|++|+++|+++++.+.
T Consensus 230 ~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 230 QLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceeeeeeHHHHHHHHHHHHHHHhc
Confidence 899999999999999999887764
No 20
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.24 E-value=1.1e-11 Score=111.67 Aligned_cols=100 Identities=17% Similarity=0.205 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++.++.|+++||+|++...... ...+. .+....++.+|+.+.+..+..++.||+.+|||+++++.+... .|..
T Consensus 128 s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~~--~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~-~~~~ 202 (266)
T 3d9s_A 128 TQGQAMVVELILTFQLALCIFAST--DSRRT--SPVGSPALSIGLSVTLGHLVGIYFTGCSMNPARSFGPAVVMN-RFSP 202 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--CTTCC--SCCCCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHT-CCCT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh--cccCC--CccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHcC-Cccc
Confidence 357899999999999999766542 11111 111246788899999999999999999999999999999766 7888
Q ss_pred -hhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 137 -AAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 137 -~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
+|+||++|++|+++|+++++.++.+
T Consensus 203 ~~Wvy~vgP~~Ga~la~~~y~~l~~~ 228 (266)
T 3d9s_A 203 AHWVFWVGPIVGAVLAAILYFYLLFP 228 (266)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CEeeeehHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998877654
No 21
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.21 E-value=2.5e-11 Score=112.13 Aligned_cols=100 Identities=19% Similarity=0.219 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+..+.++.|+++||+|++++...... +.. ......++.+|+.+.+.+...++.||+.+|||+++++.+... .|..
T Consensus 172 s~~~~f~~E~i~Tf~Lv~~Ila~~d~-~~~---~~~~~~pl~IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~-~w~~ 246 (340)
T 3iyz_A 172 TAGHGLLVELIITFQLVFTIFASCDD-KRT---DVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 246 (340)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhcC-ccC---CcccchhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHcc-CCCc
Confidence 45789999999999999976654211 111 111235678888888888887899999999999999999865 6899
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
.|+||+++++|+++|++++..++.+
T Consensus 247 ~WVywvgPiiGailaallY~~l~~p 271 (340)
T 3iyz_A 247 HWIYWVGPIIGAVLAGALYEYVFCP 271 (340)
T ss_pred EeehhHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999888744
No 22
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.19 E-value=3.9e-11 Score=105.58 Aligned_cols=98 Identities=20% Similarity=0.240 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+..+.++.|+++||+|++...... ..+.. ......++.+|+.+.+.....++.||+.+|||+++++.+... .|..
T Consensus 124 s~~~~~~~E~i~Tf~Lv~~i~~~~-~~~~~---~~~~~~pl~iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~-~w~~ 198 (223)
T 3gd8_A 124 TAGHGLLVELIITFQLVFTIFASC-DSKRT---DVTGSIALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 198 (223)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHT-CTTCS---CCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT-CCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHh-ccccC---CccCCccHHHHHHHHHHHHhccCCccccccHHHHHHHHHHhc-CCCc
Confidence 356899999999999999765431 11111 111235778888887777777789999999999999999866 7999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHH
Q 040654 137 AAIYILAQCVGGIFGALALEAVV 159 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~ 159 (306)
.|+||+++++|+++|+++++.++
T Consensus 199 ~Wvy~vgP~~Ga~la~~~y~~~~ 221 (223)
T 3gd8_A 199 HWIYWVGPIIGAVLAGGLYEYVF 221 (223)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEeehhHHHHHHHHHHHHHHHHc
Confidence 99999999999999999877654
No 23
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.19 E-value=3.2e-11 Score=110.31 Aligned_cols=100 Identities=19% Similarity=0.234 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccc
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTR 136 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~ 136 (306)
+.++.++.|+++||+|++...... ..+.. ......++.+|+.+.+.+...++.||+.+|||+++++.+... .|..
T Consensus 133 s~~~~f~~E~i~Tf~Lv~~Il~~~-d~~~~---~~~~~~pl~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~-~w~~ 207 (301)
T 2zz9_A 133 TAGHGLLVELIITFQLVFTIFASC-DDKRT---DVTGSVALAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMG-NWEN 207 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHS-CSSSS---CCSSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC-CCTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHhc-CCCCC---CccchHhHHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhC-CCcc
Confidence 357899999999999999766432 11111 111246788899888888888899999999999999999865 7999
Q ss_pred hhHHHHHHhhHHHHHHHHHHHHHhh
Q 040654 137 AAIYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 137 ~~~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
.|+||++|++|+++|++++..++.+
T Consensus 208 ~WVy~vgPiiGailaa~ly~~l~~~ 232 (301)
T 2zz9_A 208 HWIYWVGPIIGAVLAGALYEYVFCP 232 (301)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTTTC-
T ss_pred eeeeeeHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999998877643
No 24
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.18 E-value=5.5e-11 Score=108.18 Aligned_cols=104 Identities=19% Similarity=0.317 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHccc-----
Q 040654 57 KVWRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGI----- 131 (306)
Q Consensus 57 ~~~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~----- 131 (306)
+.++.++.|+++||+|++...... ...+. .......++.+|+.++...+..++.||+.+|||+++++.+...
T Consensus 144 s~~~~~~~E~i~Tf~Lv~~il~~~--d~~~~-~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g 220 (281)
T 1ldf_A 144 NFVQAFAVEMVITAILMGLILALT--DDGNG-VPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWG 220 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--CTTSS-SCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh--ccCCC-CcccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccc
Confidence 467899999999999999766532 11111 1112367889999999999999999999999999999988642
Q ss_pred -cccc------chhHHHHHHhhHHHHHHHHHHHHHhhhh
Q 040654 132 -TSFT------RAAIYILAQCVGGIFGALALEAVVTKKI 163 (306)
Q Consensus 132 -~~~~------~~~~yi~aQ~lGa~~ga~~~~~~~~~~~ 163 (306)
..|. ..|+||++|++|+++|+++++.++.++.
T Consensus 221 ~~~~~~~~~~~~~WVy~vgPi~Ga~la~~~y~~l~~~~~ 259 (281)
T 1ldf_A 221 NVAFTGGRDIPYFLVPLFGPIVGAIVGAFAYRKLIGRHL 259 (281)
T ss_dssp THHHHTTCSSCTTHHHHHHHHHHHHHHHHHHHHHTGGGC
T ss_pred cccccccCCCceeeHHhHHHHHHHHHHHHHHHHHhCccC
Confidence 2232 6999999999999999999988876543
No 25
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.15 E-value=4.2e-11 Score=107.67 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHH-HHHHHHHHHHHHHHhccccccccChHHHHHHHHccc-----c
Q 040654 59 WRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVM-STLVAIIITILLIATFPISGGHINPLVSFAAALTGI-----T 132 (306)
Q Consensus 59 ~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~-al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~-----~ 132 (306)
.+.++.|+++||+|++...... ..+.. . .+.... ++.+|+.++...++.++.||+.+|||+++++.+... .
T Consensus 135 ~~~~~~E~i~Tf~Lv~~i~~~~-d~~~~-~-~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~ 211 (258)
T 3c02_A 135 TGAFFNELILTGILLLVILVVV-DENIC-G-KFHILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKD 211 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-CHHHH-C-SCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CcccC-C-cccccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhcccccc
Confidence 4589999999999999766542 11111 0 112244 889999999999999999999999999999999753 2
Q ss_pred cc----cchhHHHHHHhhHHHHHHHHHHHHHhhhhh
Q 040654 133 SF----TRAAIYILAQCVGGIFGALALEAVVTKKIA 164 (306)
Q Consensus 133 ~~----~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~ 164 (306)
.| ...|+||++|++|+++|+++++.+..++..
T Consensus 212 ~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~~~ 247 (258)
T 3c02_A 212 TFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPLVD 247 (258)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred ccccCCceeehHHHHHHHHHHHHHHHHHHHhcccCC
Confidence 34 458999999999999999999888765543
No 26
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.11 E-value=8.1e-11 Score=106.45 Aligned_cols=98 Identities=15% Similarity=0.222 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHhhheeEEecccCCCCCCchHHHHHHHHHHHHHHHHhccccccccChHHHHHHHHcccccccchh
Q 040654 59 WRASMAELLGTAVLVFALDTIVISSIQTDTKTPNLVMSTLVAIIITILLIATFPISGGHINPLVSFAAALTGITSFTRAA 138 (306)
Q Consensus 59 ~r~~~aEfigT~~lv~~~~~~~~~~~~~~~~~~~~~~al~~g~~v~~~i~~~~~iSGah~NPavTla~~l~g~~~~~~~~ 138 (306)
.+.++.|+++||+|++...... ..... ......++.+|+.+++.....++.||+.+|||++++..+... .|...|
T Consensus 138 ~~~~~~E~i~T~~Lv~~i~~~~--d~~~~--~~~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~-~~~~~w 212 (271)
T 1j4n_A 138 GQGLGIEIIGTLQLVLCVLATT--DRRRR--DLGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITH-NFQDHW 212 (271)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHT--CSSCC--CCCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTT-CCTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhhc--cccCC--CccccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhC-CCccee
Confidence 4568899999999999765431 11111 112246778999988777777889999999999999998865 788999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHhh
Q 040654 139 IYILAQCVGGIFGALALEAVVTK 161 (306)
Q Consensus 139 ~yi~aQ~lGa~~ga~~~~~~~~~ 161 (306)
+||+++++|+++|++++..++.+
T Consensus 213 v~~vgP~~Ga~la~~~y~~~~~~ 235 (271)
T 1j4n_A 213 IFWVGPFIGAALAVLIYDFILAP 235 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998877653
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=80.56 E-value=26 Score=31.10 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhh--hhhhhc-c
Q 040654 93 LVMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTK--KIAHNF-S 168 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~--~~~~~~-~ 168 (306)
+..++.+.+++.+.++..+.. +| |--.+ -..+.+|++|.+.+--|.-=.+|=++|++++-.+... ...... .
T Consensus 69 ll~g~~F~vGL~lVvl~G~ELFTg---n~l~~-~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 144 (285)
T 3kcu_A 69 LVGGICFSLGLILCVVCGADLFTS---TVLIV-VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQ 144 (285)
T ss_dssp HHHHHHHTHHHHHHHHHTCCCTTT---THHHH-HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHH-HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchH
Confidence 455667777777666665554 34 42233 3455788898887766666666666666665544221 110000 0
Q ss_pred CCcceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 169 LGGCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 169 ~g~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
.+.....+ +. .+...+..+.|+-=++|.++.++.+.
T Consensus 145 ~~~~~~~i-a~-----~K~~~~~~~~f~~GIlcN~lVclaVw 180 (285)
T 3kcu_A 145 WGLNVLQT-AD-----HKVHHTFIEAVCLGILANLMVCLAVW 180 (285)
T ss_dssp HHHHHHHH-HH-----HTTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HH-----HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 00 01235788899999999998887764
No 28
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=64.19 E-value=59 Score=28.70 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCC-
Q 040654 93 LVMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLG- 170 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g- 170 (306)
+.-++.+.+++.+.++..+.. +|-.+ .++ ..+.+|++|.+.+--|.-=.+|=++|++++-.+.........+.+
T Consensus 68 ll~g~~F~vGL~lVvl~g~ELFTgn~l---~~~-~~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~ 143 (280)
T 3kly_A 68 LLGGLAFSLGLILVVITGGELFTSSVL---ILV-AKASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQ 143 (280)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCTTTTCC---CCS-SSSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTH
T ss_pred HHHHHHHHHHHHHHHHccccccccchH---HHH-HHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchH
Confidence 456667777777766666553 44333 232 345788999988888777777777777766555321100000000
Q ss_pred --cceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 171 --GCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 171 --~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
.....+ +. .+...+..+.|+-=++|.++.++.+.
T Consensus 144 ~~~~~~~i-a~-----~K~~~~~~~~f~~GIlcN~lVclaVw 179 (280)
T 3kly_A 144 LGLNAMAI-SQ-----HKLHHTFLQAFALGLMCNILVCLAVW 179 (280)
T ss_dssp HHHHHHHH-HH-----TTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HH-----HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 11245788999999999998887764
No 29
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=55.09 E-value=1.1e+02 Score=26.71 Aligned_cols=110 Identities=14% Similarity=0.218 Sum_probs=58.8
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhhhccCCc
Q 040654 93 LVMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAHNFSLGG 171 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~~~~~g~ 171 (306)
+..++.+.+++.+.++..+.. +| |-.......+.+|.+|.+.+--|.-=.+|=++|++++-.+............+
T Consensus 59 ll~g~~F~vGl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~ 135 (261)
T 4fc4_A 59 LVMGATFGIALTLVIIAGSELFTG---HTMFLTLGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDT 135 (261)
T ss_dssp HHHHHHTTHHHHHHHHTCCCCHHH---HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHcCCccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHH
Confidence 455566666666555543332 22 43333345567889999888888777777777776665444321100000000
Q ss_pred ceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 172 CTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 172 ~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
....-.+ ..+...+..+.|+-=++|.++..+.+.
T Consensus 136 ~~~~~ia-----~~K~~~~~~~~f~~gIlcN~lVclaVw 169 (261)
T 4fc4_A 136 SIVHSVA-----LAKTTAPATVLFFKGALCNWLVCLAIW 169 (261)
T ss_dssp SHHHHHH-----HHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 0000000 001134678888888888888887754
No 30
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=35.03 E-value=7.5 Score=35.31 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.4
Q ss_pred ccccccChHHHHHHHHccc
Q 040654 113 ISGGHINPLVSFAAALTGI 131 (306)
Q Consensus 113 iSGah~NPavTla~~l~g~ 131 (306)
=||||++||++++-.+..+
T Consensus 11 GTgGHi~palala~~L~~~ 29 (365)
T 3s2u_A 11 GTGGHVFPALACAREFQAR 29 (365)
T ss_dssp SSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 3789999999999998764
No 31
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=27.99 E-value=1.3e+02 Score=26.21 Aligned_cols=109 Identities=17% Similarity=0.250 Sum_probs=60.6
Q ss_pred hHHHHHHHHHHHHHHHHhccc-cccccChHHHHHHHHcccccccchhHHHHHHhhHHHHHHHHHHHHHhhhhhh-hccCC
Q 040654 93 LVMSTLVAIIITILLIATFPI-SGGHINPLVSFAAALTGITSFTRAAIYILAQCVGGIFGALALEAVVTKKIAH-NFSLG 170 (306)
Q Consensus 93 ~~~al~~g~~v~~~i~~~~~i-SGah~NPavTla~~l~g~~~~~~~~~yi~aQ~lGa~~ga~~~~~~~~~~~~~-~~~~g 170 (306)
+..++.+.+++.+.++..+.. +| |-.......+.+|.+|.+.+--|.-=.+|=++|++++-.+....... ....+
T Consensus 65 ll~g~~F~~Gl~lVvl~g~eLfTg---n~l~~~~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~ 141 (268)
T 3tds_E 65 IVMGLSFAIALSLVIMTGTELFTG---NNMVMSAGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVA 141 (268)
T ss_dssp HHHHHTCTHHHHHHHHHTCCCHHH---HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHH
T ss_pred HHHHHHHHHHHHHHHHhCcccccc---chHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHH
Confidence 455666666666666554432 22 43333345678889999888877777777777777665554211000 00000
Q ss_pred cceeeeeccCCCCCcccccchhHHHHHHHHHHHHHHHHHH
Q 040654 171 GCTLNVVVPGPDGPVEIGLGTRQALWLEIICSFVFLFASV 210 (306)
Q Consensus 171 ~~~~~~~~~~p~~~~~~~~s~~~~~~~E~i~T~~L~~~i~ 210 (306)
.....+ +. .+...+..+.|+-=++|.++..+.+.
T Consensus 142 ~~~~~i-a~-----~K~~~~~~~~f~~gIlcN~lVclaVw 175 (268)
T 3tds_E 142 EFFANT-AA-----SKASMPFTALFFRGILCNILVCVSVL 175 (268)
T ss_dssp HHHHHH-HH-----HHHSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HH-----HHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000 00 01135678888888899988887764
Done!