BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040655
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ENP|A Chain A, Crystal Structure Of Human Cgi121
pdb|3ENP|B Chain B, Crystal Structure Of Human Cgi121
Length = 177
Score = 80.1 bits (196), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/163 (30%), Positives = 88/163 (53%), Gaps = 4/163 (2%)
Query: 12 LSLSLFTEVTNSKELLDSMQAGTLEPEAAFLNASLIPDVFPVLAAAHKTLIAKSRESLTT 71
++L LF +V N+ +L GT++ + +N ++I D F +L AA+K + T
Sbjct: 17 VTLLLFKDVKNAGDLRRKAXEGTID--GSLINPTVIVDPFQILVAANKAVHLYKLGKXKT 74
Query: 72 RTPHSELVYNYSGSKHITESLKRCGIADSSNYVLAARFNASPDEM--EAVGKLINGKEID 129
RT +E+++N S + +I+E+LK+ GI+ + +L ++ E + + G ++
Sbjct: 75 RTLSTEIIFNLSPNNNISEALKKFGISANDTSILIVYIEEGEKQINQEYLISQVEGHQVS 134
Query: 130 LDELESRANQAQIQKHYKISSLELGISSLADAITCRIAARDTL 172
L L N +++K YK+SS E I +L DAI CR + +D L
Sbjct: 135 LKNLPEIXNITEVKKIYKLSSQEESIGTLLDAIICRXSTKDVL 177
>pdb|3LEZ|A Chain A, Crystal Structure Of A Halotolerant Bacterial
Beta-Lactamase
Length = 260
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 62 IAKSRESLTTRTPHSELVYNYSGSKHITESLKRCGIADSS---------NYVLAARFNAS 112
I S E L T +P +E +H+ E + IAD++ N +L A
Sbjct: 64 ITYSEEDLVTYSPITE--------QHVDEGMTLVEIADAAIRYSDNTAGNLLLEAM--GG 113
Query: 113 PDEMEAVGKLINGKEIDLDELESRANQAQ 141
PDE+E + + I + I++D E+ N+A+
Sbjct: 114 PDELETILRDIGDETIEMDRYETELNEAK 142
>pdb|1ZD0|A Chain A, Crystal Structure Of Pfu-542154 Conserved Hypothetical
Protein
Length = 150
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 72 RTPHSELVYNYSGSKHITESLKRCGIADSSNYVLAARFNAS 112
+T E++ SG++ I E++K+ G + NY++ NAS
Sbjct: 72 KTVPGEILVRLSGNRQIKEAIKKVGAKEGENYIVTFGENAS 112
>pdb|1RP1|A Chain A, Dog Pancreatic Lipase Related Protein 1
Length = 450
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 7 SNGNTLSLSLFTEV-----TNSKELLDSMQAGTLEPEAAFLNASLIPDVFPVLAAAHKTL 61
S GNT ++F + T+S E + GT+E N +++ FP + AA K
Sbjct: 363 SKGNTHQFNIFKGILKPGSTHSNEFDAKLDVGTIEKVKFLWNNNVVNPTFPKVGAA-KIT 421
Query: 62 IAKSRESLTTRTPHS 76
+ K E +T HS
Sbjct: 422 VQKGEE----KTVHS 432
>pdb|4EI1|A Chain A, Crystal Structure Of Human Argonaute2
pdb|4EI3|A Chain A, Crystal Structure Of Human Argonaute2
Length = 859
Score = 28.1 bits (61), Expect = 2.7, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 11/79 (13%)
Query: 64 KSRESLTTRTPHSELVYNYSGSKHITESLKRCGIA-----------DSSNYVLAARFNAS 112
K R L R PH + KH L+ C I + ++ ++ A ++
Sbjct: 313 KDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSA 372
Query: 113 PDEMEAVGKLINGKEIDLD 131
PD E + KL+ + + D
Sbjct: 373 PDRQEEISKLMRSADFNTD 391
>pdb|4F3T|A Chain A, Human Argonaute-2 - Mir-20a Complex
Length = 861
Score = 27.3 bits (59), Expect = 4.3, Method: Composition-based stats.
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 11/79 (13%)
Query: 64 KSRESLTTRTPHSELVYNYSGSKHITESLKRCGIA-----------DSSNYVLAARFNAS 112
K R L R PH + KH L+ C I + ++ ++ A ++
Sbjct: 315 KDRHKLVLRYPHLPCLQVGQEQKHTYLPLEVCNIVAGQRCIKKLTDNQTSTMIRATARSA 374
Query: 113 PDEMEAVGKLINGKEIDLD 131
PD E + KL+ + D
Sbjct: 375 PDRQEEISKLMRSASFNTD 393
>pdb|2GMS|A Chain A, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMS|B Chain B, E Coli Gdp-4-Keto-6-Deoxy-D-Mannose-3-Dehydratase With
Bound Hydrated Plp
pdb|2GMU|A Chain A, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
pdb|2GMU|B Chain B, Crystal Structure Of E Coli
Gdp-4-Keto-6-Deoxy-D-Mannose-3- Dehydratase Complexed
With Plp-Glutamate Ketimine Intermediate
Length = 390
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 90 ESLKRCGIADSSNYVLAARFNASPDEMEAVGKLINGKEIDLDE 132
ESLK + DS+ +L +P+ + + K+I G++I L E
Sbjct: 119 ESLKEA-VTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLE 160
>pdb|3GR9|A Chain A, Crystal Structure Of Cold H188k S187n
pdb|3GR9|B Chain B, Crystal Structure Of Cold H188k S187n
pdb|3GR9|C Chain C, Crystal Structure Of Cold H188k S187n
pdb|3GR9|D Chain D, Crystal Structure Of Cold H188k S187n
pdb|3GR9|E Chain E, Crystal Structure Of Cold H188k S187n
pdb|3GR9|F Chain F, Crystal Structure Of Cold H188k S187n
pdb|3GR9|G Chain G, Crystal Structure Of Cold H188k S187n
pdb|3GR9|H Chain H, Crystal Structure Of Cold H188k S187n
Length = 390
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 90 ESLKRCGIADSSNYVLAARFNASPDEMEAVGKLINGKEIDLDE 132
ESLK + DS+ +L +P+ + + K+I G++I L E
Sbjct: 119 ESLKEA-VTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLE 160
>pdb|3B8X|A Chain A, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
pdb|3B8X|B Chain B, Crystal Structure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase (Cold) H188n
Mutant With Bound Gdp-Perosamine
Length = 390
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 90 ESLKRCGIADSSNYVLAARFNASPDEMEAVGKLINGKEIDLDE 132
ESLK + DS+ +L +P+ + + K+I G++I L E
Sbjct: 119 ESLKEA-VTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLE 160
>pdb|4IRM|A Chain A, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|B Chain B, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
pdb|4IRM|C Chain C, Crystal Structure Of Mntc R116a Mutant Exhibits
Flexibility In The C- Terminal Domain
Length = 330
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 64 KSRESLTTRTPHSELVYNYSGSKHITESLKRCG 96
+ ++ LTT T +++V N +G K + ES+ R G
Sbjct: 53 EKKKVLTTFTVLADMVQNVAGDKLVVESITRIG 85
>pdb|2R0T|A Chain A, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
pdb|2R0T|B Chain B, Crystal Sructure Of
Gdp-4-Keto-6-Deoxymannose-3-Dehydratase With A Trapped
Plp-Glutamate Geminal Diamine
Length = 390
Score = 26.9 bits (58), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 90 ESLKRCGIADSSNYVLAARFNASPDEMEAVGKLINGKEIDLDE 132
ESLK + DS+ +L +P+ + + K+I G++I L E
Sbjct: 119 ESLKEA-VTDSTKAILTVNLLGNPNNFDEINKIIGGRDIILLE 160
>pdb|3UJP|A Chain A, Structure Of Mntc Protein At 2.7a
pdb|3UJP|B Chain B, Structure Of Mntc Protein At 2.7a
pdb|3UJP|C Chain C, Structure Of Mntc Protein At 2.7a
Length = 307
Score = 26.9 bits (58), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 64 KSRESLTTRTPHSELVYNYSGSKHITESLKRCG 96
+ ++ LTT T +++V N +G K + ES+ R G
Sbjct: 30 EKKKVLTTFTVLADMVQNVAGDKLVVESITRIG 62
>pdb|1XVL|A Chain A, The Three-Dimensional Structure Of Mntc From
Synechocystis 6803
pdb|1XVL|B Chain B, The Three-Dimensional Structure Of Mntc From
Synechocystis 6803
pdb|1XVL|C Chain C, The Three-Dimensional Structure Of Mntc From
Synechocystis 6803
Length = 321
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 64 KSRESLTTRTPHSELVYNYSGSKHITESLKRCG 96
+ ++ LTT T +++V N +G K + ES+ R G
Sbjct: 44 EKKKVLTTFTVLADMVQNVAGDKLVVESITRIG 76
>pdb|4EP1|A Chain A, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
pdb|4EP1|B Chain B, Crystal Structure Of Anabolic Ornithine
Carbamoyltransferase From Bacillus Anthracis
Length = 340
Score = 26.2 bits (56), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 109 FNASPDEMEAVGKLINGKEIDLDELESRANQAQIQKHY 146
F A ++ G +NGKE+ + E+ ++ A++ HY
Sbjct: 88 FEAGMVQLGGHGMFLNGKEMQMGRGETVSDTAKVLSHY 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.127 0.338
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,290,170
Number of Sequences: 62578
Number of extensions: 147153
Number of successful extensions: 467
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 24
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)