BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040660
(487 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 79.3 bits (194), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/129 (40%), Positives = 70/129 (54%), Gaps = 7/129 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G+ E +K L GA + D +G+TPL A N G +V K LI GA V+A
Sbjct: 41 LHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK 99
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLHHAA+ G + VKLL+S GA+ + D +TPL++AR G VV+ +E
Sbjct: 100 DSD--GRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 131 HICIFSGWL 139
GWL
Sbjct: 158 Q----GGWL 162
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + GN + +K L +GA + D +G+TPL A N G +V K LI GA V+A
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK 66
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLHHAA+ G + VKLL+S GA+ + D +TPL A G VV+ +
Sbjct: 67 DSD--GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + VK L+ GA+ + D +TPL A G VV+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLL 56
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 69/129 (53%), Gaps = 7/129 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G+ E +K L GA + D +G+TPL A G ++ K LI GA V+A
Sbjct: 41 LHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA-KEGHKEIVKLLISKGADVNAK 99
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH+AAK G + VKLL+S GA+ + D +TPL++AR G +V+ +E
Sbjct: 100 DS--DGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 131 HICIFSGWL 139
GWL
Sbjct: 158 Q----GGWL 162
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + GN + +K L +GA + D +G+TPL A G ++ K LI GA V+A
Sbjct: 8 LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-KEGHKEIVKLLISKGADVNAK 66
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
G TPLH+AAK G + VKLL+S GA+ + D +TPL A +G +V+
Sbjct: 67 DS--DGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
G L AA+ G + VK L+ GA+ + D +TPL A +G +V+
Sbjct: 5 GKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVK 54
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/130 (39%), Positives = 67/130 (51%), Gaps = 7/130 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G+ E +K L GA D +GKTPL A N G +V K L+ GA +A
Sbjct: 41 LHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN-GHKEVVKLLLSQGADPNAK 99
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA+ G + VKLLLS GA+ + D +TPL++AR G VV+ +E
Sbjct: 100 DS--DGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Query: 131 HICIFSGWLR 140
GWL
Sbjct: 158 Q----GGWLE 163
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/118 (38%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + GN + +K L +GA + D +GKTPL A N G +V K L+ GA +A
Sbjct: 8 LIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAEN-GHKEVVKLLLSQGADPNAK 66
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLH AA+ G + VKLLLS GA+ + D +TPL +A G VV+ +
Sbjct: 67 DS--DGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 27/52 (51%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + VK LL GA+ + D +TPL +A G VV+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLL 56
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 48/129 (37%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G+ E +K L GA D +G+TPL A N G ++ K L+ GA +A
Sbjct: 41 LHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN-GHKEIVKLLLSKGADPNAK 99
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH+AA+ G + VKLLLS GA+ + D +TPL++AR G +V+ +E
Sbjct: 100 DS--DGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Query: 131 HICIFSGWL 139
GWL
Sbjct: 158 Q----GGWL 162
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + GN + +K L +GA D +G+TPL A N G ++ K L+ GA +A
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAEN-GHKEIVKLLLSKGADPNAK 66
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLH+AA+ G + VKLLLS GA+ + D +TPL A G +V+ +
Sbjct: 67 DS--DGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + VK LL GA+ + D +TPL A G +V+ +
Sbjct: 5 GKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLL 56
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E +K L GA + DK G+TPL A N G +V K L+E GA V+A ++G
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGR 69
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
TPLH AA+ G VKLLL GA+ + + +TPL +A G VV+ +
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 120
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E +K L GA + DK G+TPL A N G +V K L+E GA V+A ++G
Sbjct: 46 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGR 102
Query: 78 TPLHHAAKRGLERTVKLLLSYGA 100
TPLH AA+ G VKLLL GA
Sbjct: 103 TPLHLAARNGHLEVVKLLLEAGA 125
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+TPL A N G +V K L+E GA V+A ++G TPLH AA+ G VKLLL G
Sbjct: 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAI 128
A+ + + +TPL +A G VV+ +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 75 HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+G TPLH AA+ G VKLLL GA+ + + +TPL +A G VV+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 57.8 bits (138), Expect = 1e-08, Method: Composition-based stats.
Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 3/83 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E +K L GA + DK G+TPL A N G +V K L+E GA V+A ++G
Sbjct: 13 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGR 69
Query: 78 TPLHHAAKRGLERTVKLLLSYGA 100
TPLH AA+ G VKLLL GA
Sbjct: 70 TPLHLAARNGHLEVVKLLLEAGA 92
Score = 56.6 bits (135), Expect = 3e-08, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 3/89 (3%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+TPL A N G +V K L+E GA V+A ++G TPLH AA+ G VKLLL G
Sbjct: 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAI 128
A+ + + +TPL +A G VV+ +
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 75 HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+G TPLH AA+ G VKLLL GA+ + + +TPL +A G VV+ +
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 57.0 bits (136), Expect = 2e-08, Method: Composition-based stats.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 32 GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERT 91
G W K+G TPL A N G + K L+ GA V+A + G TPLH AAK G
Sbjct: 1 GHMWGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEI 57
Query: 92 VKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
VKLLL+ GA+ + D TP +A+ G +V+ ++
Sbjct: 58 VKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G+ E +K L GA + K+G TPL A N G ++ K L+ GA V+A
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR 71
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
+ G TP H A K G VKLL + GA+
Sbjct: 72 --SKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + DK+G TPL A G ++ + L++ GA V+A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 63
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+ G TPLH AA+ G V++LL GA+ + D TPL +A +G +V +
Sbjct: 64 -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 62/112 (55%), Gaps = 3/112 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L + GA + DK+G TPL A G ++ + L++ GA V+A + G
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA--KDKDGY 102
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
TPLH AA+ G V++LL GA+ + +TP ++A +G ++ ++
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQ 154
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + V++L++ GA+ + D TPL +A +G +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 56.2 bits (134), Expect = 4e-08, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + DK+G TPL A G ++ + L++ GA V+A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 63
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+ G TPLH AA+ G V++LL GA+ + D TPL +A +G +V +
Sbjct: 64 -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 120
Score = 52.8 bits (125), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L + GA + DK+G TPL A G ++ + L++ GA V+A + G
Sbjct: 46 GHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA--KDKDGY 102
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
TPLH AA+ G V++LL GA+ + +TP ++A G ++ ++
Sbjct: 103 TPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQ 154
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + V++L++ GA+ + D TPL +A +G +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 65/117 (55%), Gaps = 4/117 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
L+ VN E ++ L GA ++ +D K G++PLI A N L + + L++ GA V+A
Sbjct: 120 LHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL-SMVQLLLQHGANVNA 178
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
G + LH A+ RGL V+ L+ GA++ + N TPL VAR++ +++R
Sbjct: 179 QMYS--GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 233
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTV 92
LE + +G T L A +N + + L+E GA +DA + G +PL HA + V
Sbjct: 109 LEARNYDGLTALHVA-VNTECQETVQLLLERGADIDAVDI-KSGRSPLIHAVENNSLSMV 166
Query: 93 KLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+LLL +GAN + L A +G +VR +
Sbjct: 167 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 37 DKEGKTPLIAACMN---PGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVK 93
D++G TPL A + P ++ + + G ++D Y R TPLH A L V+
Sbjct: 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ--TPLHLAVITTLPSVVR 63
Query: 94 LLLSYGANALVLNDDCQTPLEVA 116
LL++ GA+ + L+ QT +A
Sbjct: 64 LLVTAGASPMALDRHGQTAAHLA 86
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
+G + ++ L ++GA + + K ++ L AC + G D+ K L++ G V+ Y +G
Sbjct: 44 HGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNG 100
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
GTPL +A + VK+LL GA+ + D +++A A G+ +V + IE+H+
Sbjct: 101 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 156
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPL AA G V+ LL GA+ +L ++ L +A +KG+T++V+ +
Sbjct: 34 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 86
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
+G + ++ L ++GA + + K ++ L AC + G D+ K L++ G V+ Y +G
Sbjct: 62 HGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNG 118
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
GTPL +A + VK+LL GA+ + D +++A A G+ +V + IE+H+
Sbjct: 119 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 174
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPL AA G V+ LL GA+ +L ++ L +A +KG+T++V+ +
Sbjct: 52 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 104
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ Y V ++ L + GA + DK G PL AC + G Y+VA+ L++ GA V+
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVA 104
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
+ TPLH AA +G KLLL +GA+ N D TPL++ + G T++
Sbjct: 105 DLWKF--TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDI 155
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 3/116 (2%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
+G + ++ L ++GA + + K ++ L AC + G D+ K L++ G V+ Y +G
Sbjct: 46 HGQIAVVEFLLQNGADPQLLGKGRESALSLAC-SKGYTDIVKMLLDCGVDVNEYD--WNG 102
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132
GTPL +A + VK+LL GA+ + D +++A A G+ +V + IE+H+
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHL 158
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPL AA G V+ LL GA+ +L ++ L +A +KG+T++V+ +
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 61/114 (53%), Gaps = 4/114 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ Y V ++ L + GA + DK G PL AC + G Y+VA+ L++ GA V+
Sbjct: 50 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVA 108
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNV 124
+ TPLH AA +G KLLL +GA+ N D TPL++ + G T++
Sbjct: 109 DLWKF--TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDI 159
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 57/107 (53%), Gaps = 3/107 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ Y V ++ L + GA + DK G PL AC + G Y+VA+ L++ GA V+
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVAELLVKHGAVVNVA 106
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR 117
+ TPLH AA +G KLLL +GA+ N D TPL++ +
Sbjct: 107 DLWKF--TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 151
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + +D G TPL A ++ G ++ + L++ GA VDA
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVS-GHLEIVEVLLKHGADVDA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+G TPLH AA G V++LL YGA+ + TPL +A +G +V +
Sbjct: 76 -ADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVL 132
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 61/113 (53%), Gaps = 3/113 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L + GA ++ D G TPL A M G ++ + L++ GA V+A+ G
Sbjct: 58 GHLEIVEVLLKHGADVDAADVYGFTPLHLAAM-TGHLEIVEVLLKYGADVNAFD--MTGS 114
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
TPLH AA G V++LL YGA+ + +T +++ G ++ ++ N
Sbjct: 115 TPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAKSCRN 167
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G L AA+ G + V++L++ GA+ +++ TPL +A G +V + H
Sbjct: 15 GKKLLEAARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH 69
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
+G +E ++ L GA + KE ++ L A G D+ L+E ++ Y +G
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYD--WNG 102
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
GTPL +A + + V+ LL+ GA+ D TP+++A A G+ V + IENHI
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
+P G TPL A+ G TV+ LL +GA+ +L + ++ L +A G+T++V
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIV 85
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D +G TPL A N G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASN-GHLEIVEVLLKNGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA G V++LL +GA+ ++D TPL +A G +V +
Sbjct: 76 -SDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Query: 131 H 131
H
Sbjct: 135 H 135
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ + G++E ++ L ++GA + D G TPL A G ++ + L++ GA V+AY
Sbjct: 51 LHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAA-TGHLEIVEVLLKHGADVNAY 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
H TPLH AAK G V++LL +GA+
Sbjct: 110 DNDGH--TPLHLAAKYGHLEIVEVLLKHGAD 138
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + V++L++ GA+ ++D TPL +A + G +V +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVL 66
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 61/118 (51%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + DK+G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+ G TPLH AA+ G V++LL GA+ + D TPL +A +G +V +
Sbjct: 76 -KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 132
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G++E ++ L + GA + DK+G TPL A G ++ + L++ GA V+A
Sbjct: 51 LHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA- 108
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
+ G TPLH AA+ G V++LL GA+
Sbjct: 109 -KDKDGYTPLHLAAREGHLEIVEVLLKAGAD 138
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + V++L++ GA+ + D TPL +A +G +V +
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 66
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 59/121 (48%), Gaps = 3/121 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA VDA
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAY-SGHLEIVEVLLKHGADVDA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA G V++LL GA+ ++ D TPL +A G+ +V +
Sbjct: 76 -SDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 131 H 131
H
Sbjct: 135 H 135
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 59/112 (52%), Gaps = 3/112 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L + GA ++ D G TPL A G ++ + L++ GA V+A G
Sbjct: 58 GHLEIVEVLLKHGADVDASDVFGYTPLHLAAY-WGHLEIVEVLLKNGADVNAMDS--DGM 114
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
TPLH AAK G V++LL +GA+ + +T +++ G ++ ++
Sbjct: 115 TPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G L AA+ G + V++L++ GA+ ++ TPL +A G +V + H
Sbjct: 15 GRKLLEAARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
+G +E ++ L GA + KE ++ L A G D+ L+E ++ Y +G
Sbjct: 46 FGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIYD--WNG 102
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
GTPL +A + V+ LL+ GA+ D TP+++A A G+ V + IENHI
Sbjct: 103 GTPLLYAVHGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHIL 159
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 10/139 (7%)
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV----- 125
+P G TPL A+ G TV+ LL +GA+ +L + ++ L +A G+T++V
Sbjct: 31 KPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLE 90
Query: 126 RAIENHICIFSGWLRELYG-PGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAI-Y 183
R ++ +I ++G LY G LL+R A L T + + P L +A+ Y
Sbjct: 91 RDVDINIYDWNGGTPLLYAVHGNHVKCVEALLARG---ADLTTEADSGYTPMDLAVALGY 147
Query: 184 PSLLDARPRMVIALWKANL 202
+ ++ L+++NL
Sbjct: 148 RKVQQVIENHILKLFQSNL 166
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ ++G++E ++ L ++GA + D G TPL A G ++ + L++ GA V+A
Sbjct: 51 LHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA-RRGHLEIVEVLLKNGADVNAS 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
HG TPLH AAKRG V++LL GA+ + +T +++ G
Sbjct: 110 DS--HGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNG 157
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A + G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAA-HFGHLEIVEVLLKNGADVNAK 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLH AA+RG V++LL GA+ + TPL +A +G +V +
Sbjct: 77 DS--LGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVL 132
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+ E + L GA + + + +G T L AC++ + D+ K L+E GA ++ +P G
Sbjct: 51 GDTEEVLRLLERGADINYANVDGLTALHQACIDDNV-DMVKFLVENGANIN--QPDNEGW 107
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
PLH AA G + L+S GA+ +N + TPL++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDI 145
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/160 (29%), Positives = 67/160 (41%), Gaps = 35/160 (21%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+Q NV+ +K L +GA + D EG PL AA + G D+A+ LI GA V A
Sbjct: 77 LHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAA-SCGYLDIAEYLISQGAHVGAV 135
Query: 71 RPGRHGGTPLH----------------------HAAKRGLERTVKLLLSYGANALVLND- 107
G TPL AA++ ER + N+ +ND
Sbjct: 136 NS--EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV 193
Query: 108 ----DCQTPLEVARAKGFTNVVRAI-----ENHICIFSGW 138
T L VA AKG+T V++ + + +I + GW
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGW 233
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 32/67 (47%)
Query: 67 VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126
++ R + GGT LH AA +G +KLL+ + + + D TPL A G R
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACR 249
Query: 127 AIENHIC 133
+ ++C
Sbjct: 250 ILVENLC 256
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAA-RVGHLEIVEVLLKNGADVNAL 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLH AAKRG V++LL YGA+ + TPL +A G +V +
Sbjct: 77 DFS--GSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVL 132
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G++E ++ L ++GA + +D G TPL A G ++ + L++ GA V+A
Sbjct: 51 LHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAA-KRGHLEIVEVLLKYGADVNA- 108
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL YGA+
Sbjct: 109 -DDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A N G ++ + L++ GA V+A
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAAN-GQLEIVEVLLKNGADVNAS 68
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA G V++LL +GA+ + TPL +A G +V +
Sbjct: 69 DSA--GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 131 H 131
H
Sbjct: 127 H 127
Score = 49.7 bits (117), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G +E ++ L ++GA + D G TPL A + G ++ + L++ GA V+AY R G
Sbjct: 50 GQLEIVEVLLKNGADVNASDSAGITPLHLAAYD-GHLEIVEVLLKHGADVNAY--DRAGW 106
Query: 78 TPLHHAAKRGLERTVKLLLSYGAN 101
TPLH AA G V++LL +GA+
Sbjct: 107 TPLHLAALSGQLEIVEVLLKHGAD 130
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 38/116 (32%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A +G TPLH AA G V++LL G
Sbjct: 7 GKKLLEAAA--AGQDDEVRILMANGADVNA--TDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL 155
A+ + TPL +A G +V + H + + R + P L L+ QL
Sbjct: 63 ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQL 118
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G+ G L AA G + V++L++ GA+ +D+ TPL +A A G +V +
Sbjct: 3 GQDLGKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVL 58
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 5/122 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L + G + ++ L +GA D G+TPL +AA + G ++ + L+ GA V+A
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAV--GHLEIVEVLLRNGADVNA 63
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
+G TPLH AA G V++LL YGA+ + TPL +A G +V +
Sbjct: 64 V--DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLL 121
Query: 130 NH 131
H
Sbjct: 122 KH 123
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L+ G++E ++ L R+GA + +D G TPL +AA + G ++ + L++ GA V+A
Sbjct: 39 LHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL--GHLEIVEVLLKYGADVNA 96
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPL+ AA G V++LL +GA+
Sbjct: 97 --KDATGITPLYLAAYWGHLEIVEVLLKHGAD 126
Score = 42.0 bits (97), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA +AY +G TPLH AA G V++LL G
Sbjct: 3 GKKLLEAA--RAGQDDEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLLRNG 58
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAI 128
A+ ++ + TPL +A + G +V +
Sbjct: 59 ADVNAVDTNGTTPLHLAASLGHLEIVEVL 87
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 57/111 (51%), Gaps = 3/111 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G + ++ L +GA + D G TPL +N G ++ + L++ A V+A + G
Sbjct: 25 GQDDEVRILMANGADVNANDWFGITPL-HLVVNNGHLEIIEVLLKYAADVNA--SDKSGW 81
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
TPLH AA RG V++LL YGA+ ++ TPL +A G +V +
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVL 132
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ VN G++E I+ L + A + DK G TPL A G ++ + L++ GA V+A
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYR-GHLEIVEVLLKYGADVNAM 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
G TPLH AA+ G V++LL YGA+ + +T +++ G
Sbjct: 110 D--YQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNG 157
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 3/99 (3%)
Query: 8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67
E LL+ G++ ++ L ++G+ D G TPL AC N G V + L++ A V
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEAC-NHGHLKVVELLLQHKALV 69
Query: 68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106
+ G +PLH AAK G VKLLLSYGA+ +N
Sbjct: 70 NT--TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVN 106
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLH A G + V+LLL + A +PL A G ++V+ +
Sbjct: 43 GWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 62/136 (45%), Gaps = 5/136 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L+ V++ N++ +K L G G TPL IAA N +VA++L++ G +A
Sbjct: 183 LHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQ--VEVARSLLQYGGSANA 240
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G TPLH AA+ G V LLLS AN + N TPL + +G V +
Sbjct: 241 --ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 298
Query: 130 NHICIFSGWLRELYGP 145
H + R Y P
Sbjct: 299 KHGVMVDATTRMGYTP 314
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+V L + G ++ + G TPL A + G + K L++ A V+A + G
Sbjct: 289 GHVPVADVLIKHGVMVDATTRMGYTPLHVAS-HYGNIKLVKFLLQHQADVNAKT--KLGY 345
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
+PLH AA++G V LLL GA+ ++ D TPL +A+ G+ +V ++
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++ +K L + GA + + +TPL A G +VAK L++ AKV+A +
Sbjct: 25 GHLPIVKNLLQRGASPNVSNVKVETPLHMAA-RAGHTEVAKYLLQNKAKVNA--KAKDDQ 81
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
TPLH AA+ G VKLLL AN + TPL +A +G V A+
Sbjct: 82 TPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+VE + AL A + K+G TPL A G VA+ L+E A +A G++G
Sbjct: 124 GHVETVLALLEKEASQACMTKKGFTPLHVAA-KYGKVRVAELLLERDAHPNA--AGKNGL 180
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
TPLH A VKLLL G + + TPL +A + V R++
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Query: 42 TPL-IAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGA 100
TPL +A+ M G + K L++ GA + TPLH AA+ G K LL A
Sbjct: 16 TPLHVASFM--GHLPIVKNLLQRGASPNVSNVKVE--TPLHMAARAGHTEVAKYLLQNKA 71
Query: 101 NALVLNDDCQTPLEVARAKGFTNVVRAI 128
D QTPL A G TN+V+ +
Sbjct: 72 KVNAKAKDDQTPLHCAARIGHTNMVKLL 99
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 46/111 (41%), Gaps = 3/111 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+ +K L + A G TPL A G + L+E A + G
Sbjct: 91 GHTNMVKLLLENNANPNLATTAGHTPLHIAA-REGHVETVLALLEKEASQACMT--KKGF 147
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
TPLH AAK G R +LLL A+ + TPL VA ++V+ +
Sbjct: 148 TPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ YG++E ++ L + GA + ID G TPL A + G ++ + L++ GA V+A
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL-IGHLEIVEVLLKHGADVNAV 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL +GA+
Sbjct: 110 DTW--GDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAA-TYGHLEIVEVLLKHGADVNAI 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA G V++LL +GA+ ++ TPL +A G +V +
Sbjct: 77 DIX--GSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 131 H 131
H
Sbjct: 135 H 135
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA V+A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDWLGHTPLHLAA-KTGHLEIVEVLLKYGADVNAW 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+G TPLH AA G V++LL +GA+ + + TPL +A G +V +
Sbjct: 77 D--NYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVL 132
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 58/112 (51%), Gaps = 3/112 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L + GA + D G TPL A N G ++ + L++ GA V+A G
Sbjct: 58 GHLEIVEVLLKYGADVNAWDNYGATPLHLAADN-GHLEIVEVLLKHGADVNA--KDYEGF 114
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
TPLH AA G V++LL YGA+ + +T +++ G ++ ++
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A H TPLH AAK G V++LL YG
Sbjct: 15 GKKLLEAA--RAGQDDEVRILMANGADVNATDWLGH--TPLHLAAKTGHLEIVEVLLKYG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ ++ TPL +A G +V + H
Sbjct: 71 ADVNAWDNYGATPLHLAADNGHLEIVEVLLKH 102
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 60/110 (54%), Gaps = 3/110 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ +G++E ++ L ++GA + D G TPL A + G ++ + L++ GA V+A
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAA-HFGHLEIVEVLLKNGADVNAK 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
+G TPLH AA RG V++LL YGA+ + +T +++ G
Sbjct: 110 DD--NGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNG 157
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA V+AY
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAADVVGWTPLHLAAY-WGHLEIVEVLLKNGADVNAY 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPLH AA G V++LL GA+ +D+ TPL +A +G +V +
Sbjct: 77 DT--LGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ YG++E ++ L + GA + ID G TPL A + G ++ + L++ GA V+A
Sbjct: 51 LHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL-IGHLEIVEVLLKHGADVNAV 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL +GA+
Sbjct: 110 DTW--GDTPLHLAAIMGHLEIVEVLLKHGAD 138
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAA-TYGHLEIVEVLLKHGADVNAI 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA G V++LL +GA+ ++ TPL +A G +V +
Sbjct: 77 DI--MGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 131 H 131
H
Sbjct: 135 H 135
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L++ G++ +K L + GA + + + TPL AC++ G +D L++ GA V
Sbjct: 40 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASV--- 95
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+P +P+H AA+RG V L++YG N TPL +A
Sbjct: 96 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 141
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
+++ G+VE + +L G ++ TPL AC N V K L+E GA V+
Sbjct: 105 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQ- 162
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
G+ +PLH A+ E LL+ +GA+ N + + P+E+
Sbjct: 163 --GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVEL 205
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
+++ +G+ ++ L G + I + +PL AC+ G K L++ GA+V+
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV 65
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
H TPL +A G V LLL +GA ++ D +P+ A +G V ++
Sbjct: 66 TADWH--TPLFNACVSGSWDCVNLLLQHGA-SVQPESDLASPIHEAARRGHVECVNSL 120
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSG 137
+P+H AA G + +++ L+S G ++ D +PL A G + V+ + H +G
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 64
Query: 138 WLRELYGPGF 147
+ + P F
Sbjct: 65 VTADWHTPLF 74
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
+PLH A G VK+LL +GA + D TPL A G + V + H
Sbjct: 38 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 91
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 5/122 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L + G + ++ L +GA + D +G TPL +AA + G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWI--GHPEIVEVLLKHGADVNA 75
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G TPLH AA G V++LL YGA+ + TPL +A +G +V +
Sbjct: 76 RDTD--GWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLL 133
Query: 130 NH 131
H
Sbjct: 134 KH 135
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 3/112 (2%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+ E ++ L + GA + D +G TPL A N G ++ + L++ GA V+A +G
Sbjct: 58 GHPEIVEVLLKHGADVNARDTDGWTPLHLAADN-GHLEIVEVLLKYGADVNAQDA--YGL 114
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129
TPLH AA RG V++LL +GA+ + +T +++ G ++ ++
Sbjct: 115 TPLHLAADRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G L AA+ G + V++L++ GA+ +D TPL +A G +V + H
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH 69
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L + GA + DK G TPL A + G ++ + L++ GA V+A +G
Sbjct: 58 GHLEIVEVLLKHGADVNAADKMGDTPLHLAAL-YGHLEIVEVLLKNGADVNATDT--YGF 114
Query: 78 TPLHHAAKRGLERTVKLLLSYGAN 101
TPLH AA G V++LL YGA+
Sbjct: 115 TPLHLAADAGHLEIVEVLLKYGAD 138
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 58/118 (49%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D GKTPL A + G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAI-KGHLEIVEVLLKHGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+ G TPLH AA G V++LL GA+ + TPL +A G +V +
Sbjct: 76 -ADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVL 132
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A G TPLH AA +G V++LL +G
Sbjct: 15 GKKLLEAA--RAGQDDEVRILMANGADVNAEDDS--GKTPLHLAAIKGHLEIVEVLLKHG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAI 128
A+ + TPL +A G +V +
Sbjct: 71 ADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G L AA+ G + V++L++ GA+ +D +TPL +A KG +V + H
Sbjct: 15 GKKLLEAARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L++ G++ +K L + GA + + + TPL AC++ G +D L++ GA V
Sbjct: 96 LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASV--- 151
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+P +P+H AA+RG V L++YG N TPL +A
Sbjct: 152 QPESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLA 197
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 4/105 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
+++ G+VE + +L G ++ TPL AC N V K L+E GA V+
Sbjct: 161 IHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACV-KKLLESGADVNQ- 218
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115
G+ +PLH + E LL+ +GA+ N + + P+E+
Sbjct: 219 --GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 1 MGLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTL 60
MG S +++ +G+ ++ L G + I + +PL AC+ G K L
Sbjct: 53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKIL 111
Query: 61 IELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
++ GA+V+ H TPL +A G V LLL +GA ++ D +P+ A +G
Sbjct: 112 LKHGAQVNGVTADWH--TPLFNACVSGSWDCVNLLLQHGA-SVQPESDLASPIHEAARRG 168
Query: 121 FTNVVRAI 128
V ++
Sbjct: 169 HVECVNSL 176
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSG 137
+P+H AA G + +++ L+S G ++ D +PL A G + V+ + H +G
Sbjct: 61 SPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120
Query: 138 WLRELYGPGF 147
+ + P F
Sbjct: 121 VTADWHTPLF 130
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
+PLH A G VK+LL +GA + D TPL A G + V + H
Sbjct: 94 SPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH 147
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ Y V ++ L + GA + DK G PL AC + G Y+V + L++ GA V+A
Sbjct: 62 LHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC-SYGHYEVTELLLKHGACVNAM 120
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+ TPLH AA + LLLS+GA+ ++N ++ +++A
Sbjct: 121 DLWQF--TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 26 LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85
L R GA + +K+ TPL A DV + L + GAK++A G T LH AA
Sbjct: 233 LLRKGANVNEKNKDFMTPLHVAA-ERAHNDVMEVLHKHGAKMNALDSL--GQTALHRAAL 289
Query: 86 RGLERTVKLLLSYGAN 101
G +T +LLLSYG++
Sbjct: 290 AGHLQTCRLLLSYGSD 305
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 47 ACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106
A ++P VA+ L+ GA V+ + TPLH AA+R +++L +GA L+
Sbjct: 220 ASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277
Query: 107 DDCQTPLEVARAKGFTNVVRAI 128
QT L A G R +
Sbjct: 278 SLGQTALHRAALAGHLQTCRLL 299
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 55 DVAKTLIELGAKVDAYRPGRHGGTPLHHAA-----KRGLERTVKLLLSYGANALVLNDDC 109
D+AK L ++ ++ + T LH A KR ++ +LLL GAN N D
Sbjct: 190 DLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR--KQVAELLLRKGANVNEKNKDF 247
Query: 110 QTPLEVARAKGFTNVVRAIENH 131
TPL VA + +V+ + H
Sbjct: 248 MTPLHVAAERAHNDVMEVLHKH 269
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%)
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
TPLH AA R V+LLL +GA+ + PL A + G V + H
Sbjct: 60 TPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 20/151 (13%)
Query: 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63
Q+K L+ G+V+ L + GA ++ ++ +TPL+ A N L + K LI+
Sbjct: 8 HQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHL-EAVKYLIKA 66
Query: 64 GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQ-TPL--------- 113
GA VD G T LH AAK+G V+ LLS G + DD TP+
Sbjct: 67 GALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 114 ---EVARAKGFTNVVRAIENHICI----FSG 137
++ +KG +R E +IC+ FSG
Sbjct: 125 DLVKLLLSKGSDINIRDNEENICLHWAAFSG 155
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
Y +V+ +K L G+ + D E L A + G D+A+ L L AK D + HG
Sbjct: 121 YKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS-GCVDIAEIL--LAAKCDLHAVNIHG 177
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+PLH AA+ V L LS ++ + N + +TPL+ A
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCA 217
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + ++E +K L + GA ++ D EG T L A G Y+V + L+ G ++D
Sbjct: 48 LMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA-KKGHYEVVQYLLSNG-QMDVN 105
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TP+ A + VKLLLS G++ + +++ L A G ++ +
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 5/92 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L + G + ++ L +GA + +D++G TPL +AA + G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQL--GHLEIVEVLLKYGADVNA 75
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA RG V++LL +GA+
Sbjct: 76 --EDNFGITPLHLAAIRGHLEIVEVLLKHGAD 105
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A G TPLH AA+ G V++LL YG
Sbjct: 15 GKKLLEAA--RAGQDDEVRILMANGADVNAL--DEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ ++ TPL +A +G +V + H
Sbjct: 71 ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKH 102
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L+ + G E +KAL GA + +++ G TPL AA N +++A L+E GA DA
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 134
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+ T +H AA +G + V +LL Y A+ + + + TPL +A
Sbjct: 135 --KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIEL 63
Q L+ + G+ E ++ L + G + D G +PL IAA + G ++ K L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGRDEIVKALLVK 95
Query: 64 GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
GA V+A ++G TPLH+AA + +LL GAN + T + A AKG
Sbjct: 96 GAHVNAVN--QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 124 VVRAIENHICIF 135
+V HI +F
Sbjct: 154 MV-----HILLF 160
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D++ +T L AC + G ++ + L++LG V+ G +PLH AA G + VK LL
Sbjct: 37 DQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA--GWSPLHIAASAGRDEIVKALL 93
Query: 97 SYGANALVLNDDCQTPLEVARAK 119
GA+ +N + TPL A +K
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASK 116
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L+ + G E +KAL GA + +++ G TPL AA N +++A L+E GA DA
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 134
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+ T +H AA +G + V +LL Y A+ + + + TPL +A
Sbjct: 135 --KDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLA 179
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 10/132 (7%)
Query: 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIEL 63
Q L+ + G+ E ++ L + G + D G +PL IAA + G ++ K L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGXDEIVKALLVK 95
Query: 64 GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
GA V+A ++G TPLH+AA + +LL GAN + T + A AKG
Sbjct: 96 GAHVNAVN--QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLK 153
Query: 124 VVRAIENHICIF 135
+V HI +F
Sbjct: 154 MV-----HILLF 160
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D++ +T L AC + G ++ + L++LG V+ G +PLH AA G + VK LL
Sbjct: 37 DQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA--GWSPLHIAASAGXDEIVKALL 93
Query: 97 SYGANALVLNDDCQTPLEVARAK 119
GA+ +N + TPL A +K
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASK 116
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
+++ GN++ + L A D EG TPL AC + + AK L+ GA + Y
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC-DEERVEEAKFLVTQGASI--Y 199
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLL 95
+ TPL AK GL +K L
Sbjct: 200 IENKEEKTPL-QVAKGGLGLILKRL 223
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ +G++E ++ L ++GA + D G TPL A + G +V + L++ GA V+A
Sbjct: 51 LHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA-DRGHLEVVEVLLKNGADVNAN 109
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
+G TPLH AA G V++LL +GA+ + +T +++ G
Sbjct: 110 D--HNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 157
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNASDHVGWTPLHLAAY-FGHLEIVEVLLKNGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130
G TPLH AA RG V++LL GA+ + + TPL +A G +V +
Sbjct: 76 -DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 131 H 131
H
Sbjct: 135 H 135
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 50/102 (49%), Gaps = 9/102 (8%)
Query: 33 LEWIDKEGKTPLIAACMNPGLYDVA--KTLIELGAKVDAYRPGR------HGGTPLHHAA 84
+E +D+ G T L N G VA K L+E GAKVD R G T LH+AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 85 KRGLERTVKLLL-SYGANALVLNDDCQTPLEVARAKGFTNVV 125
+ VK L+ G+N ++D +TP+ +A +G VV
Sbjct: 288 QVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVV 329
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L+ + G E +KAL GA + +++ G TPL AA N +++A L+E GA DA
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 134
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+ T +H AA +G + + +LL Y A+ + + + TPL +A
Sbjct: 135 --KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 179
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D++ +T L AC + G ++ + L++LG V+ G +PLH AA G + VK LL
Sbjct: 37 DQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA--GWSPLHIAASAGRDEIVKALL 93
Query: 97 SYGANALVLNDDCQTPLEVARAK 119
GA +N + TPL A +K
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASK 116
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIEL 63
Q L+ + G+ E ++ L + G + D G +PL IAA + G ++ K L+
Sbjct: 38 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGRDEIVKALLGK 95
Query: 64 GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
GA+V+A ++G TPLH+AA + +LL GAN + T + A AKG
Sbjct: 96 GAQVNAVN--QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 153
Query: 124 VVRAIENHICIF 135
++ HI ++
Sbjct: 154 MI-----HILLY 160
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
+++ GN++ I L A D EG TPL AC + + AK L+ GA + Y
Sbjct: 143 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC-DEERVEEAKLLVSQGASI--Y 199
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLL 96
+ TPL AK GL +K ++
Sbjct: 200 IENKEEKTPL-QVAKGGLGLILKRMV 224
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDA 69
L+ + G E +KAL GA + +++ G TPL AA N +++A L+E GA DA
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR--HEIAVMLLEGGANPDA 135
Query: 70 YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
+ T +H AA +G + + +LL Y A+ + + + TPL +A
Sbjct: 136 --KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLA 180
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D++ +T L AC + G ++ + L++LG V+ G +PLH AA G + VK LL
Sbjct: 38 DQDSRTALHWAC-SAGHTEIVEFLLQLGVPVNDKDDA--GWSPLHIAASAGRDEIVKALL 94
Query: 97 SYGANALVLNDDCQTPLEVARAK 119
GA +N + TPL A +K
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASK 117
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 10/132 (7%)
Query: 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPL-IAACMNPGLYDVAKTLIEL 63
Q L+ + G+ E ++ L + G + D G +PL IAA + G ++ K L+
Sbjct: 39 QDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAA--SAGRDEIVKALLGK 96
Query: 64 GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123
GA+V+A ++G TPLH+AA + +LL GAN + T + A AKG
Sbjct: 97 GAQVNAVN--QNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLK 154
Query: 124 VVRAIENHICIF 135
++ HI ++
Sbjct: 155 MI-----HILLY 161
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
+++ GN++ I L A D EG TPL AC + + AK L+ GA + Y
Sbjct: 144 MHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC-DEERVEEAKLLVSQGASI--Y 200
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLL 96
+ TPL AK GL +K ++
Sbjct: 201 IENKEEKTPL-QVAKGGLGLILKRMV 225
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + +D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKR-GHLEIVEVLLKHGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL YGA+
Sbjct: 76 -SDSWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 52 GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111
G D + L+ GA V+A G TPLH AAKRG V++LL +GA+ + +T
Sbjct: 25 GQDDEVRILMANGADVNAMDDA--GVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRT 82
Query: 112 PLEVARAKGFTNVVRAI 128
PL +A G +V +
Sbjct: 83 PLHLAATVGHLEIVEVL 99
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G G L A + G + V++L++ GA+ ++D TPL +A +G +V + H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ G+ + +K L A D G TPLI AC + G +++ L++ GA ++A
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC-SGGHHELVALLLQHGASINA- 180
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116
G T LH A V+LLL +GA+ VLN +T ++ A
Sbjct: 181 -SNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 29/53 (54%)
Query: 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G +PLH AA G + LLL +GANA N D PL +A +G VV+ +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCL 138
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 62/148 (41%), Gaps = 21/148 (14%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
+G + I L + GA + + PL AC G + V K L++ AK + + G
Sbjct: 96 HGRADLIPLLLKHGANAGARNADQAVPLHLACQQ-GHFQVVKCLLDSNAKPN--KKDLSG 152
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136
TPL +A G V LLL +GA+ N+ T L A IE H+ +
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEA----------VIEKHVFVVE 202
Query: 137 GWLRELYGPGFLELLAPQLLSRKVWVAV 164
L L+G Q+L+++ AV
Sbjct: 203 LLL--LHGASV------QVLNKRQRTAV 222
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + DK G TPL A MN L ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHL-EIVEVLLKNGADVNAI 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH A G V++LL +GA+
Sbjct: 77 DA--IGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 35.0 bits (79), Expect = 0.090, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A + G TPLH AA V++LL G
Sbjct: 15 GKKLLEAA--RAGQDDEVRILMANGADVNA--EDKVGLTPLHLAAMNDHLEIVEVLLKNG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ ++ +TPL + G +V + H
Sbjct: 71 ADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G++E ++ L ++GA + +D G TPL A + G ++ + L++ GA V+A H
Sbjct: 58 GHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL-FGHLEIVEVLLKNGADVNANDMEGH-- 114
Query: 78 TPLHHAAKRGLERTVKLLLSYGAN 101
TPLH AA G V++LL GA+
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGAD 138
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A N G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G TPL AA G V++LL GA+ + + TPL +A G +V +
Sbjct: 77 DHA--GMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
+G++E ++ L ++GA + D EG TPL A M G ++ + L++ GA V+A
Sbjct: 90 FGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM-FGHLEIVEVLLKNGADVNA 141
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 4/89 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A G TPLH AA G V++LL G
Sbjct: 15 GKKLLEAA--RAGRDDEVRILMANGADVNAEDAS--GWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAI 128
A+ ++ TPL +A G +V +
Sbjct: 71 ADVNAVDHAGMTPLRLAALFGHLEIVEVL 99
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 43.5 bits (101), Expect = 3e-04, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
+C +C+D V +PCGH+ C C ++ CP+CR+ I +R +
Sbjct: 26 TCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRK----CPICRSTIKGTVRTF 72
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A R G TPLH AA V++LL +G
Sbjct: 15 GKKLLEAA--RAGQDDEVRILMANGADVNA--NDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ ++D TPL +A G +V + H
Sbjct: 71 ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D++G TPL A L ++ + L++ GA V+A+
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHL-EIVEVLLKHGADVNAH 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL +GA+
Sbjct: 77 --DNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + +D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKR-GHLEIVEVLLKHGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL YGA+
Sbjct: 76 -SDIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 52 GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111
G D + L+ GA V+A G TPLH AAKRG V++LL +GA+ + +T
Sbjct: 25 GQDDEVRILMANGADVNAMDDA--GVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRT 82
Query: 112 PLEVARAKGFTNVVRAI 128
PL +A G +V +
Sbjct: 83 PLHLAATVGHLEIVEVL 99
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G G L A + G + V++L++ GA+ ++D TPL +A +G +V + H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
+C +C+D V +PCGH+ C C ++ CP+CR I +R +
Sbjct: 297 TCKVCMDKEVSVVFIPCGHLVVCQECAPSLRK----CPICRGIIKGTVRTF 343
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + +D G TPL A G ++ + L++ GA V+A
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKR-GHLEIVEVLLKHGADVNAR 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G TPLH AA G V++LL YGA+
Sbjct: 77 --DIWGRTPLHLAATVGHLEIVEVLLEYGAD 105
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 28/77 (36%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 52 GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111
G D + L+ GA V+A G TPLH AAKRG V++LL +GA+ + +T
Sbjct: 25 GQDDEVRILMANGADVNAMDDA--GVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRT 82
Query: 112 PLEVARAKGFTNVVRAI 128
PL +A G +V +
Sbjct: 83 PLHLAATVGHLEIVEVL 99
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G G L A + G + V++L++ GA+ ++D TPL +A +G +V + H
Sbjct: 11 GSDLGKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 42.7 bits (99), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSS-----------CVICLDAPVEGACVPCGHMAGC 457
+ + +EQ K K++ K+ S C+IC + +E + C H + C
Sbjct: 18 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH-SFC 76
Query: 458 MSCLNEVKAKKWGCPVCRANI 478
C+NE +K CP+CR +I
Sbjct: 77 SYCINEWMKRKIECPICRKDI 97
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSS-----------CVICLDAPVEGACVPCGHMAGC 457
+ + +EQ K K++ K+ S C+IC + +E + C H + C
Sbjct: 18 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH-SFC 76
Query: 458 MSCLNEVKAKKWGCPVCRANI 478
C+NE +K CP+CR +I
Sbjct: 77 SYCINEWMKRKIECPICRKDI 97
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 41.6 bits (96), Expect = 9e-04, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 12/81 (14%)
Query: 409 VDVSSPSIEQLPCSKSKVKGDKDATSS-----------CVICLDAPVEGACVPCGHMAGC 457
+ + +EQ K K++ K+ S C+IC + +E + C H + C
Sbjct: 29 IQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAH-SFC 87
Query: 458 MSCLNEVKAKKWGCPVCRANI 478
C+NE +K CP+CR +I
Sbjct: 88 SYCINEWMKRKIECPICRKDI 108
>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain
pdb|2HDP|B Chain B, Solution Structure Of Hdm2 Ring Finger Domain
Length = 63
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 431 DATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
+A CVIC P G V GH+ C +C ++K + CPVCR I ++ Y
Sbjct: 5 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 61
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
YG E + L G + DKE T L A +N + D+ K I GA VD G
Sbjct: 19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRI-DLVKYYISKGAIVDQL-GGDLN 76
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
TPLH A ++G V L+ YGA+ +++ + + + +A G T++V
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIV 125
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 46/106 (43%), Gaps = 7/106 (6%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV---DAYRPG 73
+G+ + L G ++ +D+ G TPL+ A D + L+ V D Y
Sbjct: 119 FGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKY--- 175
Query: 74 RHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119
H T LH A G + LLL GAN N ++ L++A+ +
Sbjct: 176 -HKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQR 220
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D G TPL A M G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAM-LGHLEIVEVLLKNGADVNA- 75
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
G G TPLH AA V++LL +GA+
Sbjct: 76 -TGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Score = 33.9 bits (76), Expect = 0.19, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L GA V+A G TPLH AA G V++LL G
Sbjct: 15 GKKLLEAA--RAGQDDEVRILTANGADVNA--NDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ + +TPL +A +V + H
Sbjct: 71 ADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 13 QQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
Q + GN E + L GA + D+ G +I G D +TL+E A V+
Sbjct: 43 QVMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGFLDTLQTLLEFQADVNI--E 99
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G PLH AAK G R V+ L+ + A N N T ++AR G VV ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+T L M G ++A+ L+ GA D R G +H AA+ G T++ LL +
Sbjct: 38 GRTAL--QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ + +++ PL +A +G VV + H
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH 125
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 53/110 (48%), Gaps = 3/110 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L+ YG+ + L R G + K +TPL A + G ++ + L++ GA V+A
Sbjct: 38 LHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAA-SEGHANIVEVLLKHGADVNAK 96
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
+ T LH A + + V+LL+ YGA+ + C+T +++ G
Sbjct: 97 DMLKM--TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNG 144
Score = 35.4 bits (80), Expect = 0.073, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%)
Query: 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
G +PLH AA+ G T ++LL G + +TPL +A ++G N+V + H
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH 89
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L++ GN+ ++ + G+ +DK G T L AC + G D+ + L ++
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWAC-HGGHKDIVEXLF-TQPNIELN 134
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA---------RAKGF 121
+ + G T LH AA +G V+LLL+ GA + N + + + A + K
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDXATNAACASLLKKKQG 194
Query: 122 TNVVRAIEN 130
T+ VR + N
Sbjct: 195 TDAVRTLSN 203
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 23 IKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82
I L + LE D EG T LI A N L +A+ L+ G+ V+ G TPL
Sbjct: 51 IDKLVENFDKLEDKDIEGSTALIWAVKNNRL-GIAEKLLSKGSNVNT--KDFSGKTPLMW 107
Query: 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
+ G LL +GAN N + +TPL VA G + +V+ +
Sbjct: 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 26 LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85
L G+ + D GKTPL+ + + G +++ L+E GA V+ G TPL A+K
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSII-FGYSEMSYFLLEHGANVND--RNLEGETPLIVASK 143
Query: 86 RGLERTVKLLLSYGAN 101
G VK LL GA+
Sbjct: 144 YGRSEIVKKLLELGAD 159
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 17 YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
+G E L GA + + EG+TPLI A G ++ K L+ELGA + A
Sbjct: 111 FGYSEMSYFLLEHGANVNDRNLEGETPLIVAS-KYGRSEIVKKLLELGADISA 162
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANAL 103
LI A N + D+ + L+E GA V+ ++ G TPLH+A + E V+LLL +GA+ +
Sbjct: 29 LIKAVQNEDV-DLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 104 VLNDDCQTPLEVARAKGFTNVVRAI-----ENHICIFSGW 138
+ + TP +A G +++ + + C F G+
Sbjct: 87 LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGF 126
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 17 YGNVEGIKALCRDGAGL----------EWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGA 65
YG V+ +K L + GA + E + K G T L+ A G +V K L+ E+GA
Sbjct: 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-EKGHVEVLKILLDEMGA 193
Query: 66 KVDAYRPGRHGGTPLHHAA----KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF 121
V+A G L HA +E LLL +GA+ V + +TPL +A K
Sbjct: 194 DVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 251
Query: 122 TNVVRAI--ENHICI 134
+V+ + + HI I
Sbjct: 252 LGLVQRLLEQEHIEI 266
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGK-TPLIAACMNPGLYDVAKTLIELGAKVD 68
LL + V +V+ ++ L GA + + ++EG TPL A + D+ + L+ GA D
Sbjct: 28 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSREDIVELLLRHGA--D 84
Query: 69 AYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
++G TP AA G + +KL LS GA+
Sbjct: 85 PVLRKKNGATPFILAAIAGSVKLLKLFLSKGAD 117
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 75 HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
HG +PLH A + G V++L+ GA V+N TPL +A + G ++V+ +
Sbjct: 33 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 23 IKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82
++ L GA + +++ TPL A + G D+ + L++ A ++A HG PLH+
Sbjct: 50 VEMLIMRGARINVMNRGDDTPLHLAA-SHGHRDIVQKLLQYKADINAV--NEHGNVPLHY 106
Query: 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118
A G ++ + L++ GA + N + P++ A+A
Sbjct: 107 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 142
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 75 HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
HG +PLH A + G V++L+ GA V+N TPL +A + G ++V+ +
Sbjct: 38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 50/96 (52%), Gaps = 3/96 (3%)
Query: 23 IKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82
++ L GA + +++ TPL A + G D+ + L++ A ++A HG PLH+
Sbjct: 55 VEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAV--NEHGNVPLHY 111
Query: 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118
A G ++ + L++ GA + N + P++ A+A
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKA 147
>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|C Chain C, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 64
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 431 DATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
+A CVIC P G V GH+ C +C ++K + CPVCR I ++ Y
Sbjct: 6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTY 62
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 13 QQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
Q + GN E + L GA + D+ G +I G D +TL+E A V+
Sbjct: 43 QVMKLGNPEIARRLLLRGANPDLKDRTG-NAVIHDAARAGFLDTLQTLLEFQADVNI--E 99
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G PLH AAK G R V+ L+ + A N N T ++AR G VV ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+T L M G ++A+ L+ GA D R G +H AA+ G T++ LL +
Sbjct: 38 GRTAL--QVMKLGNPEIARRLLLRGANPDL--KDRTGNAVIHDAARAGFLDTLQTLLEFQ 93
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
A+ + +++ PL +A +G VV + H
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANAL 103
LI A N + D+ + L+E GA V+ ++ G TPLH+A + E V+LLL +GA+ +
Sbjct: 9 LIKAVQNEDV-DLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 104 VLNDDCQTPLEVARAKGFTNVVRAI-----ENHICIFSGW 138
+ + TP +A G +++ + + C F G+
Sbjct: 67 LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 62/135 (45%), Gaps = 20/135 (14%)
Query: 17 YGNVEGIKALCRDGAGL----------EWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGA 65
YG V+ +K L + GA + E + K G T L+ A G +V K L+ E+GA
Sbjct: 115 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA-EKGHVEVLKILLDEMGA 173
Query: 66 KVDAYRPGRHGGTPLHHAA----KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF 121
V+A G L HA +E LLL +GA+ V + +TPL +A K
Sbjct: 174 DVNA--CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKH 231
Query: 122 TNVVRAI--ENHICI 134
+V+ + + HI I
Sbjct: 232 LGLVQRLLEQEHIEI 246
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGK-TPLIAACMNPGLYDVAKTLIELGAKVD 68
LL + V +V+ ++ L GA + + ++EG TPL A + D+ + L+ GA D
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA-VQMSREDIVELLLRHGA--D 64
Query: 69 AYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101
++G TP AA G + +KL LS GA+
Sbjct: 65 PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD 97
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 18 GNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
G+V+ ++ L R+ + +++ GKT L M G VA L++ GA + G
Sbjct: 19 GDVQEVRRLLHRELVHPDALNRFGKTAL--QVMMFGSPAVALELLKQGASPNVQDAS--G 74
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
+P+H AA+ G T+K+L+ +GA+ L+ P+ +A +G ++VV
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 123
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 58/109 (53%), Gaps = 5/109 (4%)
Query: 18 GNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
G+V+ ++ L R+ + +++ GKT L M G VA L++ GA + G
Sbjct: 21 GDVQEVRRLLHRELVHPDALNRFGKTAL--QVMMFGSPAVALELLKQGASPNVQDAS--G 76
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
+P+H AA+ G T+K+L+ +GA+ L+ P+ +A +G ++VV
Sbjct: 77 TSPVHDAARTGFLDTLKVLVEHGADVNALDSTGSLPIHLAIREGHSSVV 125
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 423 KSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI 482
+ K++ K+A C++C + + PCGH C SC A+ CPVCR+ + V
Sbjct: 9 QEKLRKLKEAML-CMVCCEEEINSTFCPCGHTVCCESC----AAQLQSCPVCRSRVEHVQ 63
Query: 483 RLY 485
+Y
Sbjct: 64 HVY 66
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 13 QQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
Q + GN E + L GA + D+ G +I G D +TL+E A V+
Sbjct: 43 QVMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGFLDTLQTLLEFQADVNI--E 99
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G PLH AAK G R V+ L+ + A N N T ++AR G VV ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+T L M G ++A+ L+ GA D R G +H AA+ G T++ LL +
Sbjct: 38 GRTAL--QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLEFQ 93
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
A+ + +++ PL +A +G VV + H
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 32/97 (32%), Positives = 48/97 (49%), Gaps = 3/97 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+++ +K G + + G+ PL A + G ++ + L+ GA ++A P +H
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA--PDKHHI 69
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE 114
TPL A G VKLLLS GA+ V D T LE
Sbjct: 70 TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALE 106
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 18 GNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
G+V+ ++ L R+ + +++ GKT L M G +A L++ GA + G
Sbjct: 13 GDVQEVRRLLHRELVHPDALNRFGKTAL--QVMMFGSTAIALELLKQGASPNVQDTS--G 68
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
+P+H AA+ G T+K+L+ +GA+ V + P+ +A +G T VV
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 117
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
+C +CLD V VPCGH+ C C ++ CP+CRA + +R +
Sbjct: 15 TCKVCLDRAVSIVFVPCGHLV-CAECAPGLQL----CPICRAPVRSRVRTF 60
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 31/110 (28%), Positives = 54/110 (49%), Gaps = 3/110 (2%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70
L + G + ++ L +GA + D+ G TPL A + G ++ + L++ GA V+A
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV 76
Query: 71 RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120
G TPLH AA G ++LL +GA+ + +T +++ G
Sbjct: 77 DA--IGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNG 124
Score = 32.0 bits (71), Expect = 0.72, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 42/92 (45%), Gaps = 4/92 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A +G TPL+ A G V++LL G
Sbjct: 15 GKKLLEAA--RAGQDDEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
A+ ++ TPL +A G + + H
Sbjct: 71 ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH 102
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 13 QQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
Q + GN E + L GA + D+ G +I G D +TL+E A V+
Sbjct: 43 QVMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGQLDTLQTLLEFQADVNI--E 99
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G PLH AAK G R V+ L+ + A N N T ++AR G VV ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 4/94 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+T L M G ++A+ L+ GA D R G +H AA+ G T++ LL +
Sbjct: 38 GRTAL--QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGQLDTLQTLLEFQ 93
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
A+ + +++ PL +A +G VV + H
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 31/97 (31%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 18 GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG 77
G+++ +K G + + G+ PL A + G ++ + L+ GA ++A P +H
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAA-DCGQLEILEFLLLKGADINA--PDKHHI 74
Query: 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE 114
TPL A G VKLLLS GA+ V D T E
Sbjct: 75 TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFE 111
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 36.6 bits (83), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 52/118 (44%), Gaps = 4/118 (3%)
Query: 13 QQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72
Q + GN E + L GA + D+ G +I G D +TL+E A V+
Sbjct: 43 QVMKLGNPEIARRLLLRGANPDLKDRTG-FAVIHDAARAGFLDTLQTLLENQADVNI--E 99
Query: 73 GRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIE 129
G PLH AAK G R V+ L+ + A N N T ++AR G VV ++
Sbjct: 100 DNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 157
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
G+T L M G ++A+ L+ GA D R G +H AA+ G T++ LL
Sbjct: 38 GRTAL--QVMKLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAARAGFLDTLQTLLENQ 93
Query: 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133
A+ + +++ PL +A +G VV + H
Sbjct: 94 ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 127
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 36.6 bits (83), Expect = 0.032, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
C IC+D + VPCGH+ C C V CP+C I+
Sbjct: 28 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDK----CPMCYTVIT 67
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 5/109 (4%)
Query: 18 GNVEGIKALC-RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76
G+V+ ++ L R+ + +++ GKT L M G +A L++ GA + G
Sbjct: 19 GDVQEVRRLLHRELVHPDALNRFGKTAL--QVMMFGSTAIALELLKQGASPNVQDTS--G 74
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
+P+H AA+ G T+K+L+ +GA+ V + P+ +A +G T VV
Sbjct: 75 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVV 123
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.2 bits (82), Expect = 0.037, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 4/81 (4%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V A ++G TPLH AA+ G VKLLL G
Sbjct: 25 GKKLLEAA--RAGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 100 ANALVLNDDCQTPLEVARAKG 120
A+ + +T +++ G
Sbjct: 81 ADVXAQDKFGKTAFDISIDNG 101
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
L + G + ++ L +GA + DK G TPL A N G +V K L+E GA V A
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXA 85
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 36.2 bits (82), Expect = 0.041, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
C IC+D + VPCGH+ C C V CP+C I+
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDK----CPMCYTVIT 66
>pdb|2VJE|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJE|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|B Chain B, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
pdb|2VJF|D Chain D, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer
Length = 63
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 436 CVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485
C +C P +G + GH+ C C +K CP+C+ I VI+++
Sbjct: 10 CSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVF 61
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 36.2 bits (82), Expect = 0.047, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
C IC+D + VPCGH+ C C V CP+C I+
Sbjct: 27 CKICMDRNIAIVFVPCGHLVTCKQCAEAVDK----CPMCYTVIT 66
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.055, Method: Composition-based stats.
Identities = 27/62 (43%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V A ++G TPLH AA+ G VKLLL G
Sbjct: 7 GKKLLEAA--RAGQDDEVRILMANGADVAA--KDKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 100 AN 101
A+
Sbjct: 63 AD 64
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
L + G + ++ L +GA + DK G TPL A N G +V K L+E GA V+A
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVNA 67
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
+D+ G+T L+ G + L E GA +D +R R G T LH AA V+ L
Sbjct: 72 VDENGRTALLFVA-GLGSDKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVRPEVVEAL 129
Query: 96 LSYGANALVLNDDCQTPLEVAR 117
+ GA+ V ++ T LE+AR
Sbjct: 130 VELGADIEVEDERGLTALELAR 151
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLL 95
+D+ G+T L+ G + L E GA +D +R R G T LH AA V+ L
Sbjct: 73 VDENGRTALLFVA-GLGSDKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVRPEVVEAL 130
Query: 96 LSYGANALVLNDDCQTPLEVAR 117
+ GA+ V ++ T LE+AR
Sbjct: 131 VELGADIEVEDERGLTALELAR 152
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 60/151 (39%), Gaps = 44/151 (29%)
Query: 11 LYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV-- 67
L + N + + +K + +D ++ +D EG TPL A N + ++AK LI+ GA +
Sbjct: 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDI-EIAKALIDRGADINL 67
Query: 68 ------------------------------DAYRPGRHGGTPLHHAAKRGLERTVKLLLS 97
D + R+GG L AA++G VKLLL
Sbjct: 68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLE 127
Query: 98 YGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G + +D G+T ++ A+
Sbjct: 128 DGREDIDFQNDF----------GYTALIEAV 148
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVK-AKKWGCPVCRANI 478
C IC + + PCGH+ C SCL + ++ GCP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 379
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVK-AKKWGCPVCRANI 478
C IC + + PCGH+ C SCL + ++ GCP CR I
Sbjct: 337 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 379
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVK-AKKWGCPVCRANI 478
C IC + + PCGH+ C SCL + ++ GCP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 377
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVK-AKKWGCPVCRANI 478
C IC + + PCGH+ C SCL + ++ GCP CR I
Sbjct: 335 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 377
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 33.5 bits (75), Expect = 0.27, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANI 478
C IC + + PCGH+ C SCL +++ GCP CR I
Sbjct: 27 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 69
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 30 GAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87
GA + W++ ++ TPLI A L + L++ GA V+ G PLHHA G
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRG--PLHHATILG 279
Query: 88 LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
L L GA+ + + + PL +A ++V
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 30 GAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87
GA + W++ ++ TPLI A L + L++ GA V+ G PLHHA G
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRG--PLHHATILG 279
Query: 88 LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
L L GA+ + + + PL +A ++V
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVK-AKKWGCPVCRANI 478
C IC + + PCGH+ C SCL + + GCP CR I
Sbjct: 341 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEI 383
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 424 SKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIR 483
S V+ ++ + CV+C + V +PC H C C+ + CP+CR + +
Sbjct: 6 SGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQ----CPMCRQFVQESFA 61
Query: 484 L 484
L
Sbjct: 62 L 62
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Query: 30 GAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87
GA + W++ ++ TPLI A L + L++ GA V+ G PLHHA G
Sbjct: 223 GADVNWVNGGQDNATPLIQATAANSLL-ACEFLLQNGANVNQADSAGRG--PLHHATILG 279
Query: 88 LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV 125
L L GA+ + + + PL +A ++V
Sbjct: 280 HTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIV 317
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 33.1 bits (74), Expect = 0.40, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANI 478
C IC + + PCGH+ C SCL +++ GCP CR I
Sbjct: 30 CKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEI 72
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 32.3 bits (72), Expect = 0.53, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANI 478
C IC + + PCGH+ C SCL ++ GCP CR I
Sbjct: 29 CKICAENDKDVKIEPCGHLM-CTSCLTAWQESDGQGCPFCRCEI 71
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 422 SKSKVKGDKDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479
S +VK D C IC+D + +PC H + C C+++ + CP+CR ++
Sbjct: 5 SSGRVKQLTDE-EECCICMDGRAD-LILPCAH-SFCQKCIDKWSDRHRNCPICRLQMT 59
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 32.3 bits (72), Expect = 0.63, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG---CPVCRANISQ 480
C ICLD + + CGH C+ C+ ++ G CP+C+ ++ +
Sbjct: 23 CPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D G TP AC + G +V K+L + K D + G T LH A + + L+
Sbjct: 69 DDSGWTPFHIAC-SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 97 SYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
GA+ + + Q PL A + G ++ +
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDG-AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE-LGAKVD 68
L++ + G+++ I+ LC G + + W DK+G TPL A + G D A L+E GA+ D
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-LAEGHGDAAVLLVEKYGAEYD 202
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99
GK L AA G D + L+ GA V+A + G TPLH AA+ G V++LL G
Sbjct: 3 GKKLLEAA--RAGQDDEVRILMANGADVNA--KDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 100 AN 101
A+
Sbjct: 59 AD 60
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 16/52 (30%), Positives = 28/52 (53%)
Query: 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
G L AA+ G + V++L++ GA+ + D TPL +A +G +V +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVL 54
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69
L + G + ++ L +GA + DK+G TPL A G ++ + L++ GA V+A
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAA-REGHLEIVEVLLKAGADVNA 63
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D G TP AC + G +V K+L + K D + G T LH A + + L+
Sbjct: 69 DDSGWTPFHIAC-SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 97 SYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
GA+ + + Q PL A + G ++ +
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDG-AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE-LGAKVD 68
L++ + G+++ I+ LC G + + W DK+G TPL A + G D A L+E GA+ D
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-LAEGHGDAAVLLVEKYGAEYD 202
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 1/92 (1%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96
D G TP AC + G +V K+L + K D + G T LH A + + L+
Sbjct: 69 DDSGWTPFHIAC-SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI 127
Query: 97 SYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128
GA+ + + Q PL A + G ++ +
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 11 LYQQVNYGNVEGIKALCRDG-AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIE-LGAKVD 68
L++ + G+++ I+ LC G + + W DK+G TPL A + G D A L+E GA+ D
Sbjct: 144 LHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA-LAEGHGDAAVLLVEKYGAEYD 202
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 52 GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111
G +D+ + +I D P G T LH+A G VK L+ +G N + D T
Sbjct: 48 GEFDLVQRIIY--EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Query: 112 PLEVA 116
PL A
Sbjct: 106 PLHCA 110
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 52 GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111
G +D+ + +I D P G T LH+A G VK L+ +G N + D T
Sbjct: 48 GEFDLVQRIIY--EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWT 105
Query: 112 PLEVA 116
PL A
Sbjct: 106 PLHCA 110
>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii
Length = 389
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 60 LIELG---AKVDAYRPGRHGGTPLHHA---AKRGLERTVKLLLSYGANALVLNDDCQ 110
+IEL AKV +P HGG P+HH K K++ S+G +V+ ++ +
Sbjct: 204 IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLE 260
>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i
Length = 291
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 60 LIELG---AKVDAYRPGRHGGTPLHHA---AKRGLERTVKLLLSYGANALVL 105
+IEL AKV +P HGG P+HH K K++ S+G +V+
Sbjct: 204 IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 255
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 3/90 (3%)
Query: 39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY 98
+G TPLI A + + + LI A ++A G T LH AA V +LL +
Sbjct: 117 DGTTPLILAA-RLAIEGMVEDLITADADINA--ADNSGKTALHWAAAVNNTEAVNILLMH 173
Query: 99 GANALVLNDDCQTPLEVARAKGFTNVVRAI 128
AN +D +TPL +A +G +A+
Sbjct: 174 HANRDAQDDKDETPLFLAAREGSYEASKAL 203
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 430 KDATSS-----CVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKWGCPVCRANISQVIR 483
KDA S C IC++ VE +PC H C C V+ CP CR +S R
Sbjct: 7 KDAIPSLSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSSWTR 65
Query: 484 LYA 486
+
Sbjct: 66 YHT 68
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 432 ATSSCVICLDAPVEGA-------CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
T SC IC+D E CGH+ C CL + CP CR I+
Sbjct: 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 60
Score = 30.0 bits (66), Expect = 3.2, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 432 ATSSCVICLDAPVEGA-------CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
T SC IC+D E CGH+ C CL + CP CR I+
Sbjct: 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 125
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWG---CPVC 474
C ICLD + + CGH C+ C+ ++ G CP+C
Sbjct: 23 CPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63
>pdb|3IDD|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3IDD|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 407
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 350 MHEAR--LSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE 392
+ EAR LS H + +++N +P + ++ S +P+ P T++
Sbjct: 195 LEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEK 239
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 29.6 bits (65), Expect = 3.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 432 ATSSCVICLDAPVEGA-------CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
T SC IC+D E CGH+ C CL + CP CR I+
Sbjct: 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 63
>pdb|3KD8|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3KD8|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 399
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 350 MHEAR--LSGHSSQQTQIQNNNMPATKTMIHSLDTIPSAPPVTDE 392
+ EAR LS H + +++N +P + ++ S +P+ P T++
Sbjct: 194 LEEARRILSDHRVNKERVKNGRLPGNELLVRSAGKVPAIPSFTEK 238
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 60 LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119
+I+ G +DA G T LH+AA +KLLL A +N+ +T L++AR K
Sbjct: 193 IIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 250
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 29.3 bits (64), Expect = 5.1, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 432 ATSSCVICLDAPVEGA-------CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
A SC IC+D E CGH+ C CL + CP CR I+
Sbjct: 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 56
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 29.3 bits (64), Expect = 5.2, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY 98
+G TPLI A L + + LI A V+A G + LH AA +LL
Sbjct: 14 DGTTPLILAA-RLALEGMLEDLINSHADVNAV--DDLGKSALHWAAAVNNVDAAVVLLKN 70
Query: 99 GANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131
GAN + N+ +TPL +A +G + + +H
Sbjct: 71 GANKDMQNNKEETPLFLAAREGSYETAKVLLDH 103
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 2/93 (2%)
Query: 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG 64
Q+ + L V++G V+ +KAL A + D +G T L+ AC G ++A L+ +
Sbjct: 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC-EHGHKEIAGLLLAVP 239
Query: 65 AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLS 97
+ D R G T L A G +L S
Sbjct: 240 S-CDISLTDRDGSTALMVALDAGQSEIASMLYS 271
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 60 LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119
+I+ G +DA G T LH+AA +KLLL A +N+ +T L++AR K
Sbjct: 212 IIQNGGHLDA--KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKK 269
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 29.3 bits (64), Expect = 5.6, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 22/56 (39%), Gaps = 8/56 (14%)
Query: 432 ATSSCVICLDAPVEGA-------CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480
T SC IC+D E CGH+ C CL + CP CR I+
Sbjct: 14 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68
>pdb|2DOC|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Neural Cell Adhesion Molecule 2
Length = 119
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 6/52 (11%)
Query: 60 LIELG---AKVDAYRPGRHGGTPLHH---AAKRGLERTVKLLLSYGANALVL 105
+IEL AKV +P HGG P+HH K K++ S+G +V+
Sbjct: 26 IIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 77
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 28.5 bits (62), Expect = 7.8, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 434 SSCVICLDAPVEGACVPCGHMAGCMSCLN---EVKAKKWGCPVC 474
+SC +CL+ E + CGH C +C+ E + + CPVC
Sbjct: 16 ASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human
Iaspp
Length = 229
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84
++EG T L A Y + LI GA V++ P HG TPLH AA
Sbjct: 51 NEEGITALHNAICGAN-YSIVDFLITAGANVNS--PDSHGWTPLHCAA 95
>pdb|3VUE|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain
pdb|3VUF|A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I
Catalytic Domain In Complex With Adp
Length = 536
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 24/55 (43%)
Query: 135 FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDA 189
F G L E GP + P+L+ V + +L TG + K K YP + A
Sbjct: 332 FIGRLEEQKGPDVMAAAIPELMQEDVQIVLLGTGKKKFEKLLKSMEEKYPGKVRA 386
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,841,392
Number of Sequences: 62578
Number of extensions: 544984
Number of successful extensions: 1603
Number of sequences better than 100.0: 150
Number of HSP's better than 100.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1171
Number of HSP's gapped (non-prelim): 339
length of query: 487
length of database: 14,973,337
effective HSP length: 103
effective length of query: 384
effective length of database: 8,527,803
effective search space: 3274676352
effective search space used: 3274676352
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)