Query 040660
Match_columns 487
No_of_seqs 436 out of 4359
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 10:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040660.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040660hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4412 26S proteasome regulat 100.0 1.2E-34 2.5E-39 244.5 11.0 168 3-176 34-203 (226)
2 PHA02791 ankyrin-like protein; 100.0 3.8E-30 8.2E-35 246.3 20.8 195 3-207 26-225 (284)
3 KOG4412 26S proteasome regulat 100.0 1E-30 2.3E-35 220.6 11.8 187 7-199 3-193 (226)
4 PHA02791 ankyrin-like protein; 100.0 3.7E-29 8E-34 239.5 20.6 184 5-203 59-245 (284)
5 KOG0509 Ankyrin repeat and DHH 100.0 1.2E-29 2.7E-34 252.8 13.8 177 3-185 74-252 (600)
6 PHA02874 ankyrin repeat protei 100.0 5.8E-28 1.3E-32 248.6 21.0 205 4-214 32-259 (434)
7 PHA02878 ankyrin repeat protei 100.0 6.2E-28 1.3E-32 251.3 20.9 204 6-217 36-308 (477)
8 PHA02859 ankyrin repeat protei 100.0 1.6E-27 3.5E-32 220.0 18.5 172 4-182 18-196 (209)
9 PHA02875 ankyrin repeat protei 100.0 2.6E-27 5.6E-32 242.5 21.0 191 4-199 32-223 (413)
10 PHA03100 ankyrin repeat protei 99.9 6.6E-27 1.4E-31 244.2 19.7 189 4-198 103-303 (480)
11 KOG0509 Ankyrin repeat and DHH 99.9 1.5E-27 3.2E-32 238.0 13.2 205 8-217 45-253 (600)
12 PHA02946 ankyin-like protein; 99.9 1.1E-26 2.4E-31 238.0 19.4 181 3-190 68-254 (446)
13 PHA02878 ankyrin repeat protei 99.9 1.3E-26 2.8E-31 241.3 19.2 158 22-187 149-309 (477)
14 PHA02875 ankyrin repeat protei 99.9 4.2E-26 9E-31 233.5 21.9 188 7-200 2-190 (413)
15 PHA02874 ankyrin repeat protei 99.9 3E-26 6.4E-31 235.9 20.5 177 3-187 120-297 (434)
16 PHA02716 CPXV016; CPX019; EVM0 99.9 1.6E-26 3.4E-31 244.5 18.6 175 4-183 174-404 (764)
17 PHA03100 ankyrin repeat protei 99.9 2.3E-26 5E-31 240.2 18.8 208 4-217 32-258 (480)
18 PHA02859 ankyrin repeat protei 99.9 4.3E-26 9.3E-31 210.4 17.1 146 3-153 47-200 (209)
19 KOG0508 Ankyrin repeat protein 99.9 6.7E-27 1.5E-31 224.1 11.9 158 5-169 82-239 (615)
20 KOG0514 Ankyrin repeat protein 99.9 8.1E-27 1.8E-31 217.0 9.8 158 4-166 265-428 (452)
21 KOG0508 Ankyrin repeat protein 99.9 1.4E-26 3E-31 222.0 11.1 190 2-198 37-235 (615)
22 PHA02946 ankyin-like protein; 99.9 1.6E-25 3.4E-30 229.4 19.2 206 7-219 37-252 (446)
23 PHA02798 ankyrin-like protein; 99.9 1.7E-25 3.8E-30 233.4 19.3 194 3-199 67-312 (489)
24 PHA03095 ankyrin-like protein; 99.9 2.7E-25 5.8E-30 231.6 19.4 209 4-217 44-265 (471)
25 PHA02795 ankyrin-like protein; 99.9 2.3E-25 5E-30 221.2 17.7 166 4-175 113-292 (437)
26 PHA02716 CPXV016; CPX019; EVM0 99.9 1.9E-25 4.1E-30 236.3 17.3 164 3-171 208-429 (764)
27 KOG0510 Ankyrin repeat protein 99.9 1.3E-25 2.7E-30 228.3 14.6 177 3-183 221-415 (929)
28 PHA03095 ankyrin-like protein; 99.9 5.8E-25 1.3E-29 229.1 20.1 209 3-217 79-298 (471)
29 PHA02876 ankyrin repeat protei 99.9 1E-24 2.2E-29 236.9 21.2 207 4-215 270-482 (682)
30 PHA02876 ankyrin repeat protei 99.9 1.2E-24 2.6E-29 236.3 20.6 180 3-187 303-485 (682)
31 PHA02798 ankyrin-like protein; 99.9 9.7E-25 2.1E-29 227.8 18.2 165 3-172 105-318 (489)
32 KOG0510 Ankyrin repeat protein 99.9 7.3E-25 1.6E-29 222.7 16.4 125 72-199 269-398 (929)
33 PLN03192 Voltage-dependent pot 99.9 5.1E-24 1.1E-28 234.6 19.8 163 5-175 523-685 (823)
34 PHA02989 ankyrin repeat protei 99.9 9.4E-24 2E-28 220.7 18.8 191 6-199 68-310 (494)
35 PHA02989 ankyrin repeat protei 99.9 1.7E-23 3.7E-28 218.8 19.2 170 5-180 33-220 (494)
36 PHA02917 ankyrin-like protein; 99.9 1.8E-23 3.8E-28 222.5 18.6 189 3-198 28-251 (661)
37 PHA02743 Viral ankyrin protein 99.9 1.4E-23 3.1E-28 186.5 14.7 138 3-145 16-162 (166)
38 KOG0502 Integral membrane anky 99.9 8.5E-24 1.8E-28 184.1 9.5 164 4-175 93-256 (296)
39 PHA02741 hypothetical protein; 99.9 5.6E-23 1.2E-27 183.4 13.6 128 4-134 18-157 (169)
40 PHA02730 ankyrin-like protein; 99.9 2.2E-22 4.8E-27 209.2 18.6 193 4-199 38-258 (672)
41 PHA02884 ankyrin repeat protei 99.9 3.4E-22 7.5E-27 191.3 16.5 154 4-170 29-187 (300)
42 PHA02795 ankyrin-like protein; 99.9 4.8E-22 1E-26 197.7 17.6 169 13-189 83-265 (437)
43 PHA02743 Viral ankyrin protein 99.9 2.7E-22 5.9E-27 178.2 13.5 142 29-176 9-159 (166)
44 PLN03192 Voltage-dependent pot 99.9 3.4E-22 7.4E-27 220.3 16.4 142 3-152 554-696 (823)
45 KOG4177 Ankyrin [Cell wall/mem 99.9 1.3E-22 2.9E-27 218.6 12.5 161 5-171 472-632 (1143)
46 KOG0502 Integral membrane anky 99.9 6.8E-23 1.5E-27 178.5 7.4 156 5-169 127-282 (296)
47 PHA02736 Viral ankyrin protein 99.9 2.9E-22 6.2E-27 176.2 10.6 129 3-136 13-153 (154)
48 KOG4177 Ankyrin [Cell wall/mem 99.9 3.2E-22 7E-27 215.6 12.6 180 4-189 437-617 (1143)
49 PHA02917 ankyrin-like protein; 99.9 1.4E-21 3.1E-26 208.0 16.9 161 3-172 64-257 (661)
50 PHA02741 hypothetical protein; 99.9 1.4E-21 3E-26 174.4 13.0 133 33-171 14-158 (169)
51 KOG0512 Fetal globin-inducing 99.9 4.1E-21 8.8E-26 161.5 13.0 143 8-156 64-209 (228)
52 PHA02730 ankyrin-like protein; 99.9 9.4E-21 2E-25 197.1 17.4 156 10-172 346-525 (672)
53 KOG0514 Ankyrin repeat protein 99.8 3.8E-21 8.2E-26 179.4 9.4 174 18-198 237-427 (452)
54 KOG0505 Myosin phosphatase, re 99.8 3.4E-21 7.4E-26 188.7 9.5 171 10-186 43-272 (527)
55 KOG0507 CASK-interacting adapt 99.8 6.3E-21 1.4E-25 193.0 10.6 169 4-176 46-220 (854)
56 KOG0505 Myosin phosphatase, re 99.8 9.9E-21 2.1E-25 185.5 11.4 145 3-150 69-270 (527)
57 PHA02736 Viral ankyrin protein 99.8 8.9E-21 1.9E-25 166.7 10.0 132 33-172 10-153 (154)
58 KOG0195 Integrin-linked kinase 99.8 4.9E-21 1.1E-25 173.3 6.4 155 15-175 8-163 (448)
59 PHA02792 ankyrin-like protein; 99.8 1.4E-19 3E-24 186.5 17.8 179 4-186 172-451 (631)
60 PHA02884 ankyrin repeat protei 99.8 1.2E-19 2.7E-24 173.8 15.4 132 33-168 25-160 (300)
61 TIGR00870 trp transient-recept 99.8 1.6E-19 3.5E-24 197.9 14.6 141 6-149 16-213 (743)
62 KOG0507 CASK-interacting adapt 99.8 1.1E-19 2.4E-24 184.0 9.5 174 4-184 79-260 (854)
63 TIGR00870 trp transient-recept 99.8 1E-18 2.2E-23 191.6 16.1 145 38-188 15-218 (743)
64 KOG0195 Integrin-linked kinase 99.8 2.6E-19 5.7E-24 162.2 9.2 130 4-136 31-160 (448)
65 PF12796 Ank_2: Ankyrin repeat 99.8 1.4E-18 3.1E-23 137.7 11.0 89 11-106 1-89 (89)
66 KOG0512 Fetal globin-inducing 99.8 1.8E-18 3.9E-23 145.6 11.8 140 42-186 65-206 (228)
67 KOG3676 Ca2+-permeable cation 99.8 3.4E-18 7.4E-23 175.6 12.6 160 5-168 141-331 (782)
68 PHA02792 ankyrin-like protein; 99.8 1.1E-17 2.4E-22 172.5 16.3 156 9-172 308-480 (631)
69 cd00204 ANK ankyrin repeats; 99.8 1.7E-17 3.7E-22 139.4 14.6 124 3-129 3-126 (126)
70 PF12796 Ank_2: Ankyrin repeat 99.8 5.9E-18 1.3E-22 134.1 10.7 89 44-141 1-89 (89)
71 cd00204 ANK ankyrin repeats; 99.7 1.1E-16 2.3E-21 134.5 15.0 125 35-165 2-126 (126)
72 KOG4369 RTK signaling protein 99.7 8.1E-18 1.7E-22 175.3 8.7 166 6-174 756-921 (2131)
73 KOG4214 Myotrophin and similar 99.7 2E-16 4.4E-21 119.2 7.8 101 43-149 5-105 (117)
74 COG0666 Arp FOG: Ankyrin repea 99.7 1.1E-15 2.4E-20 142.4 13.1 130 33-168 66-203 (235)
75 KOG4214 Myotrophin and similar 99.6 1.5E-15 3.3E-20 114.6 9.8 104 8-115 3-106 (117)
76 KOG4369 RTK signaling protein 99.6 2.6E-16 5.6E-21 164.2 7.4 169 4-176 821-990 (2131)
77 KOG3676 Ca2+-permeable cation 99.6 1.2E-15 2.5E-20 157.1 11.2 127 3-132 180-331 (782)
78 KOG1710 MYND Zn-finger and ank 99.6 2.3E-15 5.1E-20 136.7 11.4 124 7-132 12-135 (396)
79 COG0666 Arp FOG: Ankyrin repea 99.6 2.4E-14 5.2E-19 133.3 15.5 126 4-132 70-203 (235)
80 PTZ00322 6-phosphofructo-2-kin 99.5 3E-14 6.5E-19 153.0 12.3 106 9-117 84-196 (664)
81 PTZ00322 6-phosphofructo-2-kin 99.5 2.9E-14 6.3E-19 153.2 12.1 103 42-149 84-193 (664)
82 KOG4172 Predicted E3 ubiquitin 99.5 8.3E-16 1.8E-20 102.2 -1.2 53 434-486 8-61 (62)
83 KOG0515 p53-interacting protei 99.5 4E-14 8.6E-19 138.2 9.9 115 47-166 557-673 (752)
84 PF13857 Ank_5: Ankyrin repeat 99.5 2.9E-14 6.3E-19 101.9 4.7 55 60-116 1-56 (56)
85 KOG0515 p53-interacting protei 99.5 1.4E-13 3E-18 134.5 9.0 118 9-129 552-672 (752)
86 PF13637 Ank_4: Ankyrin repeat 99.5 1.6E-13 3.5E-18 97.4 6.7 54 76-129 1-54 (54)
87 PF13857 Ank_5: Ankyrin repeat 99.4 1.2E-13 2.5E-18 98.7 4.4 55 26-83 1-56 (56)
88 KOG1710 MYND Zn-finger and ank 99.4 8.4E-13 1.8E-17 120.2 10.7 122 40-167 12-134 (396)
89 PF13637 Ank_4: Ankyrin repeat 99.4 2.8E-13 6.2E-18 96.1 5.8 54 40-96 1-54 (54)
90 PF13920 zf-C3HC4_3: Zinc fing 99.3 1.1E-12 2.3E-17 91.2 3.2 48 434-481 3-50 (50)
91 KOG4275 Predicted E3 ubiquitin 99.2 1.9E-12 4.1E-17 117.6 -1.7 51 433-487 300-350 (350)
92 KOG4265 Predicted E3 ubiquitin 99.2 1.2E-11 2.6E-16 116.9 3.5 56 431-486 288-343 (349)
93 KOG0823 Predicted E3 ubiquitin 99.1 4.5E-11 9.8E-16 106.4 3.5 56 430-486 44-104 (230)
94 KOG0317 Predicted E3 ubiquitin 99.0 1.5E-10 3.2E-15 106.2 3.8 50 434-484 240-291 (293)
95 PLN03208 E3 ubiquitin-protein 99.0 4.1E-10 8.9E-15 98.7 5.5 54 431-485 16-87 (193)
96 KOG0818 GTPase-activating prot 99.0 2.7E-09 5.8E-14 104.1 9.3 98 34-133 121-224 (669)
97 KOG0320 Predicted E3 ubiquitin 98.9 3.6E-10 7.7E-15 96.1 2.5 52 433-485 131-186 (187)
98 KOG0506 Glutaminase (contains 98.9 9.2E-10 2E-14 106.9 5.5 97 36-135 502-599 (622)
99 KOG0783 Uncharacterized conser 98.9 8.9E-10 1.9E-14 113.4 5.1 75 73-149 49-124 (1267)
100 KOG0782 Predicted diacylglycer 98.9 9.7E-09 2.1E-13 101.7 9.7 119 11-132 870-990 (1004)
101 PF13923 zf-C3HC4_2: Zinc fing 98.8 1.6E-09 3.5E-14 70.8 2.6 38 436-474 1-39 (39)
102 KOG1571 Predicted E3 ubiquitin 98.8 8.1E-10 1.8E-14 104.7 1.1 53 430-486 302-354 (355)
103 PHA02929 N1R/p28-like protein; 98.8 2.7E-09 5.9E-14 98.0 4.3 51 434-485 175-233 (238)
104 KOG0783 Uncharacterized conser 98.8 2.4E-09 5.3E-14 110.3 4.2 95 22-118 32-128 (1267)
105 KOG0818 GTPase-activating prot 98.8 1.5E-08 3.3E-13 98.9 9.2 88 8-98 134-222 (669)
106 KOG0506 Glutaminase (contains 98.8 4.9E-09 1.1E-13 101.9 5.7 92 4-98 503-595 (622)
107 KOG0705 GTPase-activating prot 98.8 1.2E-08 2.5E-13 101.6 8.2 92 44-136 628-721 (749)
108 PF13639 zf-RING_2: Ring finge 98.8 2.1E-09 4.6E-14 72.4 1.7 40 435-475 2-44 (44)
109 PF15227 zf-C3HC4_4: zinc fing 98.8 4.3E-09 9.4E-14 69.6 2.8 38 436-474 1-42 (42)
110 PF13606 Ank_3: Ankyrin repeat 98.7 1.3E-08 2.9E-13 62.1 3.9 28 76-103 2-29 (30)
111 PF00023 Ank: Ankyrin repeat H 98.7 1.7E-08 3.7E-13 63.3 4.3 31 76-106 2-32 (33)
112 KOG0782 Predicted diacylglycer 98.7 6.7E-08 1.5E-12 95.9 9.2 119 44-168 870-990 (1004)
113 KOG0705 GTPase-activating prot 98.7 6E-08 1.3E-12 96.6 8.2 90 9-101 626-719 (749)
114 PF13606 Ank_3: Ankyrin repeat 98.7 3.1E-08 6.8E-13 60.4 3.8 28 40-68 2-29 (30)
115 KOG0522 Ankyrin repeat protein 98.6 9.2E-08 2E-12 94.8 7.9 85 10-97 23-109 (560)
116 PHA02926 zinc finger-like prot 98.6 2.4E-08 5.2E-13 88.4 2.6 50 432-482 169-233 (242)
117 PF00023 Ank: Ankyrin repeat H 98.6 7.9E-08 1.7E-12 60.3 4.1 31 39-70 1-31 (33)
118 KOG3609 Receptor-activated Ca2 98.6 2.5E-07 5.4E-12 97.0 9.7 121 6-136 24-158 (822)
119 PF14634 zf-RING_5: zinc-RING 98.6 5E-08 1.1E-12 65.5 2.9 41 435-476 1-44 (44)
120 KOG0522 Ankyrin repeat protein 98.6 1.7E-07 3.7E-12 93.0 7.8 87 42-131 22-110 (560)
121 PF00097 zf-C3HC4: Zinc finger 98.5 7E-08 1.5E-12 63.9 2.7 38 436-474 1-41 (41)
122 cd00162 RING RING-finger (Real 98.4 1.2E-07 2.7E-12 63.9 2.7 43 435-478 1-45 (45)
123 smart00504 Ubox Modified RING 98.4 1.7E-07 3.6E-12 68.6 3.3 50 434-484 2-53 (63)
124 COG5574 PEX10 RING-finger-cont 98.4 8.9E-08 1.9E-12 87.0 2.0 46 433-479 215-262 (271)
125 TIGR00599 rad18 DNA repair pro 98.4 1.4E-07 3.1E-12 93.1 2.8 50 430-480 23-72 (397)
126 KOG0521 Putative GTPase activa 98.3 6.1E-07 1.3E-11 96.6 5.9 100 62-164 642-741 (785)
127 smart00184 RING Ring finger. E 98.3 4.3E-07 9.3E-12 59.0 2.9 38 436-474 1-39 (39)
128 PF13445 zf-RING_UBOX: RING-ty 98.3 3.3E-07 7.2E-12 60.5 2.1 30 436-467 1-34 (43)
129 KOG2384 Major histocompatibili 98.3 1.8E-06 4E-11 74.8 6.7 68 65-134 3-71 (223)
130 KOG0521 Putative GTPase activa 98.3 8.1E-07 1.8E-11 95.7 5.6 98 29-129 643-742 (785)
131 KOG0520 Uncharacterized conser 98.3 7E-07 1.5E-11 95.6 4.9 122 6-131 573-702 (975)
132 KOG2164 Predicted E3 ubiquitin 98.3 4.4E-07 9.4E-12 90.1 3.0 53 433-486 186-245 (513)
133 KOG0511 Ankyrin repeat protein 98.2 4.3E-06 9.3E-11 79.7 8.2 75 8-86 37-111 (516)
134 KOG2384 Major histocompatibili 98.2 2.9E-06 6.2E-11 73.6 6.4 74 30-106 2-76 (223)
135 COG5432 RAD18 RING-finger-cont 98.2 4.6E-07 9.9E-12 82.8 1.5 49 431-480 23-71 (391)
136 KOG0287 Postreplication repair 98.2 4.6E-07 1E-11 84.6 1.1 49 431-480 21-69 (442)
137 KOG3609 Receptor-activated Ca2 98.1 8.6E-06 1.9E-10 85.7 8.7 126 38-174 23-160 (822)
138 KOG0511 Ankyrin repeat protein 98.1 1.1E-05 2.4E-10 76.9 8.5 85 41-131 37-121 (516)
139 PF12678 zf-rbx1: RING-H2 zinc 98.1 2.6E-06 5.6E-11 64.0 3.3 40 435-475 21-73 (73)
140 KOG0520 Uncharacterized conser 98.1 4.8E-06 1E-10 89.4 6.3 130 33-167 567-702 (975)
141 KOG0978 E3 ubiquitin ligase in 98.0 1.6E-06 3.4E-11 90.5 0.0 52 433-485 643-697 (698)
142 PF04564 U-box: U-box domain; 97.9 7.6E-06 1.6E-10 61.5 3.4 48 432-480 3-51 (73)
143 COG5243 HRD1 HRD ubiquitin lig 97.9 4.6E-06 1E-10 79.1 2.3 46 432-478 286-344 (491)
144 COG5540 RING-finger-containing 97.9 4.5E-06 9.7E-11 77.1 2.0 48 431-479 321-372 (374)
145 KOG0824 Predicted E3 ubiquitin 97.9 4.7E-06 1E-10 77.2 1.4 47 434-481 8-55 (324)
146 KOG1100 Predicted E3 ubiquitin 97.8 4.7E-06 1E-10 75.6 0.9 48 435-486 160-207 (207)
147 KOG1785 Tyrosine kinase negati 97.8 8E-06 1.7E-10 78.1 1.6 47 434-481 370-418 (563)
148 KOG4628 Predicted E3 ubiquitin 97.8 1.5E-05 3.3E-10 76.9 3.0 46 434-480 230-279 (348)
149 KOG4692 Predicted E3 ubiquitin 97.7 1.8E-05 3.8E-10 74.6 2.2 49 432-481 421-469 (489)
150 KOG2177 Predicted E3 ubiquitin 97.6 2.3E-05 5E-10 77.4 1.5 46 430-476 10-55 (386)
151 KOG4159 Predicted E3 ubiquitin 97.6 3.3E-05 7.1E-10 76.7 2.4 49 431-480 82-130 (398)
152 PF14835 zf-RING_6: zf-RING of 97.4 2.8E-05 6.2E-10 55.0 -0.4 44 433-479 7-51 (65)
153 KOG0802 E3 ubiquitin ligase [P 97.4 5.8E-05 1.3E-09 79.7 1.4 46 432-478 290-340 (543)
154 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00016 3.4E-09 54.8 3.0 46 433-479 21-82 (85)
155 COG5236 Uncharacterized conser 97.3 0.00017 3.8E-09 67.9 3.6 52 430-482 58-111 (493)
156 KOG1039 Predicted E3 ubiquitin 97.3 0.00011 2.5E-09 71.4 1.9 51 431-482 159-224 (344)
157 PF14447 Prok-RING_4: Prokaryo 97.3 9.6E-05 2.1E-09 50.6 0.9 43 434-479 8-50 (55)
158 COG5152 Uncharacterized conser 97.2 0.00018 3.9E-09 62.5 2.2 51 431-482 194-244 (259)
159 KOG0311 Predicted E3 ubiquitin 97.0 8.2E-05 1.8E-09 70.6 -2.0 50 431-481 41-92 (381)
160 KOG2505 Ankyrin repeat protein 96.9 0.0016 3.4E-08 64.8 6.1 65 53-117 403-471 (591)
161 KOG1813 Predicted E3 ubiquitin 96.9 0.00034 7.3E-09 65.0 1.2 49 433-482 241-289 (313)
162 KOG2879 Predicted E3 ubiquitin 96.9 0.00073 1.6E-08 62.1 3.0 46 433-479 239-287 (298)
163 smart00248 ANK ankyrin repeats 96.8 0.0022 4.8E-08 37.4 3.9 23 77-99 3-25 (30)
164 TIGR00570 cdk7 CDK-activating 96.6 0.0011 2.4E-08 63.2 2.3 30 450-480 25-55 (309)
165 smart00248 ANK ankyrin repeats 96.6 0.0039 8.4E-08 36.3 3.9 27 40-67 2-28 (30)
166 KOG0828 Predicted E3 ubiquitin 96.5 0.0011 2.3E-08 65.7 1.4 48 431-479 569-634 (636)
167 KOG2505 Ankyrin repeat protein 96.3 0.0075 1.6E-07 60.2 6.1 71 20-96 404-480 (591)
168 KOG3002 Zn finger protein [Gen 96.2 0.0024 5.3E-08 61.3 1.9 45 432-481 47-93 (299)
169 KOG0297 TNF receptor-associate 96.0 0.0024 5.2E-08 64.4 1.2 50 431-481 19-69 (391)
170 PF14570 zf-RING_4: RING/Ubox 96.0 0.0045 9.7E-08 41.6 1.9 42 436-478 1-47 (48)
171 KOG0825 PHD Zn-finger protein 95.9 0.0019 4.2E-08 67.3 -0.0 50 434-484 124-176 (1134)
172 PF07800 DUF1644: Protein of u 95.9 0.0079 1.7E-07 51.0 3.3 51 434-484 3-96 (162)
173 COG5175 MOT2 Transcriptional r 95.8 0.0049 1.1E-07 58.2 2.1 48 431-479 12-64 (480)
174 PF04641 Rtf2: Rtf2 RING-finge 95.7 0.011 2.3E-07 56.4 4.1 52 431-484 111-168 (260)
175 KOG1734 Predicted RING-contain 95.6 0.0065 1.4E-07 55.7 1.9 46 433-479 224-281 (328)
176 PF06128 Shigella_OspC: Shigel 95.5 0.068 1.5E-06 48.3 7.8 115 10-135 156-280 (284)
177 KOG3039 Uncharacterized conser 95.5 0.0099 2.1E-07 53.8 2.6 48 432-480 220-271 (303)
178 smart00744 RINGv The RING-vari 95.4 0.013 2.8E-07 40.0 2.5 40 435-475 1-49 (49)
179 PF06128 Shigella_OspC: Shigel 95.4 0.12 2.6E-06 46.7 9.1 116 44-171 157-280 (284)
180 PF03854 zf-P11: P-11 zinc fin 95.2 0.014 3E-07 38.5 2.0 47 434-482 3-49 (50)
181 KOG0826 Predicted E3 ubiquitin 95.2 0.011 2.3E-07 56.1 1.9 52 433-485 300-354 (357)
182 KOG0804 Cytoplasmic Zn-finger 95.1 0.013 2.7E-07 57.9 2.3 42 434-478 176-221 (493)
183 PF05290 Baculo_IE-1: Baculovi 95.1 0.012 2.7E-07 48.1 1.8 46 434-480 81-133 (140)
184 KOG2660 Locus-specific chromos 95.0 0.0056 1.2E-07 58.2 -0.5 53 433-486 15-68 (331)
185 KOG3579 Predicted E3 ubiquitin 94.9 0.18 3.9E-06 46.9 9.0 30 434-464 269-302 (352)
186 KOG2932 E3 ubiquitin ligase in 94.8 0.024 5.3E-07 53.1 3.2 45 433-481 90-136 (389)
187 KOG1001 Helicase-like transcri 94.8 0.013 2.8E-07 62.9 1.5 44 434-479 455-500 (674)
188 KOG1002 Nucleotide excision re 94.7 0.011 2.5E-07 59.1 1.0 48 431-479 534-586 (791)
189 PF11789 zf-Nse: Zinc-finger o 94.1 0.044 9.6E-07 38.7 2.5 40 433-473 11-53 (57)
190 COG5219 Uncharacterized conser 93.8 0.028 6.1E-07 60.3 1.5 49 431-480 1467-1524(1525)
191 PF03158 DUF249: Multigene fam 93.8 0.23 5.1E-06 43.6 6.8 138 9-166 48-191 (192)
192 PF11793 FANCL_C: FANCL C-term 93.7 0.02 4.3E-07 42.5 0.1 45 434-479 3-66 (70)
193 COG5194 APC11 Component of SCF 93.7 0.058 1.3E-06 39.9 2.5 29 450-479 53-81 (88)
194 KOG1814 Predicted E3 ubiquitin 93.6 0.036 7.8E-07 54.2 1.8 31 433-464 184-217 (445)
195 PF05883 Baculo_RING: Baculovi 92.7 0.082 1.8E-06 43.9 2.3 34 433-467 26-68 (134)
196 KOG2113 Predicted RNA binding 91.9 0.16 3.4E-06 48.0 3.3 52 431-484 341-392 (394)
197 KOG1428 Inhibitor of type V ad 91.8 0.09 1.9E-06 58.9 2.0 50 431-481 3484-3546(3738)
198 COG5220 TFB3 Cdk activating ki 91.7 0.059 1.3E-06 48.7 0.4 46 432-478 9-63 (314)
199 PF10272 Tmpp129: Putative tra 91.0 0.24 5.1E-06 48.8 3.8 28 451-479 311-351 (358)
200 PF04710 Pellino: Pellino; In 91.0 0.067 1.5E-06 52.3 0.0 53 433-486 328-411 (416)
201 COG5222 Uncharacterized conser 90.6 0.13 2.8E-06 48.1 1.5 42 434-476 275-318 (427)
202 PF11929 DUF3447: Domain of un 89.2 0.85 1.8E-05 34.3 4.8 48 8-63 7-54 (76)
203 KOG3842 Adaptor protein Pellin 88.6 0.54 1.2E-05 44.5 3.9 47 432-479 340-414 (429)
204 KOG2930 SCF ubiquitin ligase, 88.6 0.24 5.3E-06 38.7 1.4 27 450-477 80-106 (114)
205 KOG2817 Predicted E3 ubiquitin 87.7 0.39 8.6E-06 47.1 2.6 53 433-486 334-394 (394)
206 PHA02862 5L protein; Provision 86.5 0.67 1.4E-05 38.8 2.9 45 434-479 3-53 (156)
207 PF11929 DUF3447: Domain of un 86.4 1.2 2.5E-05 33.6 4.1 46 79-131 9-54 (76)
208 PHA02825 LAP/PHD finger-like p 86.3 0.69 1.5E-05 39.6 3.0 47 432-479 7-59 (162)
209 KOG1493 Anaphase-promoting com 84.7 0.31 6.8E-06 35.8 0.2 29 450-479 50-81 (84)
210 PF10367 Vps39_2: Vacuolar sor 84.0 0.41 8.8E-06 38.7 0.6 31 432-463 77-109 (109)
211 KOG1941 Acetylcholine receptor 83.4 0.38 8.2E-06 46.9 0.2 46 433-479 365-416 (518)
212 PHA03096 p28-like protein; Pro 83.2 0.68 1.5E-05 44.4 1.8 44 434-478 179-236 (284)
213 KOG2113 Predicted RNA binding 83.2 0.29 6.2E-06 46.3 -0.7 49 434-482 137-186 (394)
214 KOG4185 Predicted E3 ubiquitin 81.1 0.95 2.1E-05 44.0 2.1 33 445-478 21-54 (296)
215 KOG1952 Transcription factor N 79.3 0.87 1.9E-05 49.0 1.1 48 431-479 189-247 (950)
216 KOG4445 Uncharacterized conser 78.3 0.81 1.8E-05 43.1 0.5 45 434-479 116-186 (368)
217 KOG4362 Transcriptional regula 78.0 0.62 1.3E-05 49.4 -0.4 47 433-480 21-70 (684)
218 PF02891 zf-MIZ: MIZ/SP-RING z 77.1 1.4 3E-05 30.2 1.3 43 434-477 3-50 (50)
219 KOG3161 Predicted E3 ubiquitin 76.7 1 2.3E-05 46.8 0.8 36 434-472 12-51 (861)
220 COG5183 SSM4 Protein involved 75.0 2.4 5.2E-05 45.4 2.9 52 433-485 12-71 (1175)
221 KOG0827 Predicted E3 ubiquitin 74.5 2 4.3E-05 42.1 2.0 31 444-475 18-52 (465)
222 PF04216 FdhE: Protein involve 74.0 1 2.2E-05 43.8 -0.1 52 433-485 172-228 (290)
223 KOG2068 MOT2 transcription fac 72.2 2.4 5.2E-05 40.9 2.0 46 434-480 250-299 (327)
224 PRK03564 formate dehydrogenase 71.6 1.9 4.2E-05 41.7 1.2 44 433-476 187-234 (309)
225 PF12906 RINGv: RING-variant d 67.8 3 6.5E-05 28.1 1.2 39 436-474 1-47 (47)
226 KOG2114 Vacuolar assembly/sort 67.2 1.5 3.4E-05 47.2 -0.5 43 434-480 841-884 (933)
227 TIGR01562 FdhE formate dehydro 67.0 2 4.4E-05 41.6 0.3 45 433-477 184-233 (305)
228 KOG0298 DEAD box-containing he 66.6 1.5 3.2E-05 49.6 -0.7 44 434-478 1154-1198(1394)
229 KOG3899 Uncharacterized conser 65.2 3.5 7.5E-05 38.8 1.4 28 451-479 325-365 (381)
230 KOG1940 Zn-finger protein [Gen 63.5 2.3 5E-05 40.3 -0.0 45 434-480 159-207 (276)
231 PF08746 zf-RING-like: RING-li 61.9 9.1 0.0002 25.2 2.6 38 436-474 1-43 (43)
232 PF03158 DUF249: Multigene fam 60.6 17 0.00038 32.2 4.8 113 6-130 75-191 (192)
233 KOG3053 Uncharacterized conser 57.1 6 0.00013 36.6 1.5 50 431-481 18-84 (293)
234 COG5109 Uncharacterized conser 55.9 6.7 0.00015 37.4 1.6 50 434-485 337-395 (396)
235 KOG3268 Predicted E3 ubiquitin 55.8 7.6 0.00016 33.8 1.8 48 431-479 163-228 (234)
236 KOG0825 PHD Zn-finger protein 55.4 15 0.00032 39.6 4.2 30 450-480 120-155 (1134)
237 KOG3113 Uncharacterized conser 54.6 9.4 0.0002 35.3 2.3 45 433-480 111-159 (293)
238 KOG4218 Nuclear hormone recept 54.5 7.7 0.00017 37.5 1.8 16 430-445 12-27 (475)
239 PF04423 Rad50_zn_hook: Rad50 53.8 5.6 0.00012 27.6 0.6 12 468-479 20-31 (54)
240 cd00350 rubredoxin_like Rubred 51.7 6.1 0.00013 24.3 0.4 16 468-483 17-32 (33)
241 KOG1812 Predicted E3 ubiquitin 51.7 5.1 0.00011 40.5 0.1 31 434-465 147-181 (384)
242 PF10083 DUF2321: Uncharacteri 51.7 7.7 0.00017 33.2 1.2 25 453-481 28-52 (158)
243 PF13240 zinc_ribbon_2: zinc-r 49.5 3.2 6.9E-05 23.3 -1.0 22 457-478 2-23 (23)
244 PTZ00303 phosphatidylinositol 48.3 44 0.00096 36.2 6.2 30 434-464 461-499 (1374)
245 KOG3799 Rab3 effector RIM1 and 46.8 6.4 0.00014 32.5 -0.0 43 433-478 65-117 (169)
246 KOG1645 RING-finger-containing 46.3 9.3 0.0002 37.9 1.0 33 446-479 22-56 (463)
247 KOG1815 Predicted E3 ubiquitin 45.0 13 0.00029 38.4 2.0 32 433-465 70-102 (444)
248 KOG3842 Adaptor protein Pellin 42.7 13 0.00028 35.5 1.3 42 442-484 313-356 (429)
249 PLN02189 cellulose synthase 41.7 16 0.00035 41.2 2.0 45 434-479 35-87 (1040)
250 KOG3039 Uncharacterized conser 39.8 21 0.00046 32.9 2.1 31 433-464 43-73 (303)
251 PF02318 FYVE_2: FYVE-type zin 39.4 4.7 0.0001 33.2 -1.9 44 433-477 54-103 (118)
252 KOG0513 Ca2+-independent phosp 38.8 2.3 4.9E-05 44.3 -4.7 112 5-122 53-182 (503)
253 KOG4217 Nuclear receptors of t 37.9 1.7E+02 0.0037 30.0 8.1 26 433-464 269-296 (605)
254 KOG4451 Uncharacterized conser 37.8 18 0.0004 32.8 1.4 23 457-479 252-274 (286)
255 PF14569 zf-UDP: Zinc-binding 37.6 27 0.00058 26.1 2.0 46 434-480 10-63 (80)
256 KOG1924 RhoA GTPase effector D 36.6 1.8E+02 0.0039 31.9 8.5 8 202-209 441-448 (1102)
257 PF07191 zinc-ribbons_6: zinc- 36.4 4.3 9.3E-05 29.8 -2.2 42 434-481 2-43 (70)
258 PF04710 Pellino: Pellino; In 36.2 12 0.00026 37.2 0.0 34 444-477 302-337 (416)
259 PF10217 DUF2039: Uncharacteri 35.8 9.5 0.00021 29.7 -0.6 35 434-477 56-90 (92)
260 cd00729 rubredoxin_SM Rubredox 35.7 16 0.00035 22.6 0.5 14 470-483 20-33 (34)
261 KOG3836 HLH transcription fact 35.3 9.6 0.00021 40.0 -0.8 48 52-101 407-454 (605)
262 PF10146 zf-C4H2: Zinc finger- 34.9 22 0.00049 33.0 1.6 25 454-478 194-218 (230)
263 KOG3970 Predicted E3 ubiquitin 34.4 32 0.00069 31.3 2.4 45 434-479 51-105 (299)
264 PF07975 C1_4: TFIIH C1-like d 33.2 31 0.00067 23.7 1.6 26 449-475 25-50 (51)
265 KOG1595 CCCH-type Zn-finger pr 31.2 8.8 0.00019 39.5 -1.8 70 75-148 57-130 (528)
266 PF10764 Gin: Inhibitor of sig 30.5 38 0.00083 22.7 1.7 31 435-467 1-31 (46)
267 PLN02436 cellulose synthase A 29.3 34 0.00073 38.8 2.0 45 434-479 37-89 (1094)
268 PF13248 zf-ribbon_3: zinc-rib 28.7 13 0.00027 21.5 -0.7 21 457-477 5-25 (26)
269 COG4306 Uncharacterized protei 28.4 28 0.00061 28.4 0.9 21 457-480 31-51 (160)
270 PF10497 zf-4CXXC_R1: Zinc-fin 28.2 50 0.0011 26.5 2.4 42 434-476 8-69 (105)
271 PF14311 DUF4379: Domain of un 27.7 32 0.0007 23.8 1.1 23 450-474 33-55 (55)
272 PF01671 ASFV_360: African swi 27.7 1.2E+02 0.0025 27.6 4.7 103 12-135 90-194 (215)
273 KOG0801 Predicted E3 ubiquitin 27.1 22 0.00048 30.5 0.2 23 431-453 175-200 (205)
274 KOG4846 Nuclear receptor [Sign 26.8 2E+02 0.0043 29.0 6.5 14 432-445 131-144 (538)
275 KOG0802 E3 ubiquitin ligase [P 26.0 72 0.0016 34.0 3.8 44 431-479 477-520 (543)
276 KOG1709 Guanidinoacetate methy 25.8 55 0.0012 30.0 2.4 40 26-66 1-40 (271)
277 cd00730 rubredoxin Rubredoxin; 25.2 29 0.00063 23.7 0.4 14 470-483 36-49 (50)
278 COG4416 Com Mu-like prophage p 24.2 47 0.001 22.8 1.2 20 457-476 7-32 (60)
279 KOG2807 RNA polymerase II tran 24.2 35 0.00075 33.0 0.9 41 434-475 331-374 (378)
280 KOG2034 Vacuolar sorting prote 23.6 37 0.0008 37.4 1.0 30 434-464 818-849 (911)
281 KOG1709 Guanidinoacetate methy 23.5 63 0.0014 29.7 2.3 40 60-101 1-40 (271)
282 PF02809 UIM: Ubiquitin intera 23.1 84 0.0018 16.4 1.8 15 290-304 3-17 (18)
283 PF09297 zf-NADH-PPase: NADH p 23.0 18 0.00038 22.0 -0.9 23 453-476 3-29 (32)
284 PRK01343 zinc-binding protein; 22.6 36 0.00078 23.9 0.5 10 470-479 11-20 (57)
285 PF05605 zf-Di19: Drought indu 22.5 34 0.00073 23.6 0.3 38 434-479 3-42 (54)
286 TIGR00622 ssl1 transcription f 22.2 60 0.0013 26.4 1.8 41 434-475 56-110 (112)
287 KOG0513 Ca2+-independent phosp 21.5 2.8 6.2E-05 43.6 -7.5 88 37-136 133-220 (503)
288 PF04053 Coatomer_WDAD: Coatom 21.4 1.4E+02 0.0031 30.8 4.8 107 8-133 322-430 (443)
289 KOG1812 Predicted E3 ubiquitin 21.2 48 0.001 33.5 1.3 40 434-474 307-351 (384)
290 smart00290 ZnF_UBP Ubiquitin C 20.2 71 0.0015 21.3 1.6 22 436-458 2-23 (50)
No 1
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=244.52 Aligned_cols=168 Identities=29% Similarity=0.265 Sum_probs=159.8
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPL 80 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpL 80 (487)
.|++|+|||||||..|+.++|.+|++. +..+|.+|..|+||||+||.. |+.++|+.|+.+ |+++|+. +..|.|+|
T Consensus 34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~-g~~evVk~Ll~r~~advna~--tn~G~T~L 110 (226)
T KOG4412|consen 34 DDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASN-GNDEVVKELLNRSGADVNAT--TNGGQTCL 110 (226)
T ss_pred ccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhc-CcHHHHHHHhcCCCCCccee--cCCCccee
Confidence 467999999999999999999999954 888999999999999999999 999999999998 9999998 99999999
Q ss_pred HHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHH
Q 040660 81 HHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKV 160 (487)
Q Consensus 81 h~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~ 160 (487)
|||+..|..+++++|++.|+.++++|..|.||||-|+.-|.++++++|+..|+.+| .+|++|.|||| .|...++.++
T Consensus 111 HyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n--~qDk~G~TpL~-~al~e~~~d~ 187 (226)
T KOG4412|consen 111 HYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLN--TQDKYGFTPLH-HALAEGHPDV 187 (226)
T ss_pred hhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCC--cccccCccHHH-HHHhccCchH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999 7777789999
Q ss_pred HHHhhcCCCCCCCCCC
Q 040660 161 WVAVLPTGSRNPTKPF 176 (487)
Q Consensus 161 ~~~Ll~~g~~~~~~~~ 176 (487)
..+|+.+|++....+.
T Consensus 188 a~lLV~~gAd~~~edk 203 (226)
T KOG4412|consen 188 AVLLVRAGADTDREDK 203 (226)
T ss_pred HHHHHHhccceeeccc
Confidence 9999999999877763
No 2
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=3.8e-30 Score=246.26 Aligned_cols=195 Identities=17% Similarity=0.119 Sum_probs=163.6
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|+||||+|+..|+.+++++|++.|++++..+ |.||||+|+.. |+.+++++|+..|++++.+ |..|+||||+
T Consensus 26 ~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~-g~~eiV~lLL~~Gadvn~~--d~~G~TpLh~ 100 (284)
T PHA02791 26 ADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGMDDSQF--DDKGNTALYY 100 (284)
T ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence 47789999999999999999999999999888764 68999999999 9999999999999999987 8899999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCC-CHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHhhhcCCHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQ-TPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLAPQLLSRKV 160 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a~~~~~~~~ 160 (487)
|+..|+.+++++|+++|++++.++..|+ ||||+|+..|+.++|++|++++.+. .| ..|.|||| +|+..++.++
T Consensus 101 Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~----~d~~~g~TpLh-~Aa~~g~~ei 175 (284)
T PHA02791 101 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST----FDLAILLSCIH-ITIKNGHVDM 175 (284)
T ss_pred HHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc----cccccCccHHH-HHHHcCCHHH
Confidence 9999999999999999999999888885 8999999999999999999987653 23 35889999 8999999999
Q ss_pred HHHhhcCCCCCCCCCCccchh-ccccccccchHHHHHHH--hcccCCCCC
Q 040660 161 WVAVLPTGSRNPTKPFKLELA-IYPSLLDARPRMVIALW--KANLEEPKF 207 (487)
Q Consensus 161 ~~~Ll~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~--~~~~~~~~~ 207 (487)
+++|+++|++.+.++..+... ++.+...+...++..|. ++++..+++
T Consensus 176 v~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~ 225 (284)
T PHA02791 176 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL 225 (284)
T ss_pred HHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence 999999999988877655544 56666677777776665 344444433
No 3
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1e-30 Score=220.64 Aligned_cols=187 Identities=24% Similarity=0.248 Sum_probs=169.1
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCC-CCCccCC-CCChHHHHHHhCCCcHHHHHHHH-HcCCCccccCCCCCCCcHHHHH
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGA-GLEWIDK-EGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~-~G~TpL~~A~~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpLh~A 83 (487)
+.++.+.+++......|+.|++... .++.++. +|+|||||||.. |+.+++.+|+ +.+..+|.+ |..||||||+|
T Consensus 3 ~~~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~-g~~eiv~fLlsq~nv~~ddk--DdaGWtPlhia 79 (226)
T KOG4412|consen 3 YASLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSF-GHVEIVYFLLSQPNVKPDDK--DDAGWTPLHIA 79 (226)
T ss_pred ccchHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeec-CchhHHHHHHhcCCCCCCCc--cccCCchhhhh
Confidence 4577888888888899999998866 6787776 999999999999 9999999999 556777776 99999999999
Q ss_pred HHhCCHHHHHHHHHc-CCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 84 AKRGLERTVKLLLSY-GANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
+..|+.++|+.|+.+ |+|+|+.++.|.|+||||+.+|..+|+++|+++|+.++ .+|+.|.|||| -|+..+..++++
T Consensus 80 ~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~--~kD~~~qtplH-RAAavGklkvie 156 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR--IKDKQGQTPLH-RAAAVGKLKVIE 156 (226)
T ss_pred hhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc--ccccccCchhH-HHHhccchhhHH
Confidence 999999999999998 99999999999999999999999999999999999999 99999999999 888999999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
+|+..|+..+.++..+...++.++-++.+..-..|.+
T Consensus 157 ~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~ 193 (226)
T KOG4412|consen 157 YLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR 193 (226)
T ss_pred HHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence 9999999999999888888888876666665554443
No 4
>PHA02791 ankyrin-like protein; Provisional
Probab=99.97 E-value=3.7e-29 Score=239.47 Aligned_cols=184 Identities=15% Similarity=0.100 Sum_probs=161.4
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCC-cHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGG-TPLHHA 83 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~-TpLh~A 83 (487)
.+|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++++.+ +..|+ ||||+|
T Consensus 59 ~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~-g~~eivk~Ll~~gadin~~--~~~g~~TpL~~A 135 (284)
T PHA02791 59 LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHA 135 (284)
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCcc--CCCCCcHHHHHH
Confidence 3578999999999999999999999999999999999999999999 9999999999999999987 77785 899999
Q ss_pred HHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH-HHHHhhhcCCHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF-LELLAPQLLSRKVW 161 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~-L~~~a~~~~~~~~~ 161 (487)
+..|+.++|++|++++.+. .| ..|.||||+|+..|+.++|++|+++|++++ .+|..|.|| || +|+..++.+++
T Consensus 136 a~~g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n--~~d~~g~t~~L~-~Aa~~~~~e~v 210 (284)
T PHA02791 136 VMLNDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDLEML 210 (284)
T ss_pred HHcCCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCC--cccCCCCChHHH-HHHHcCCHHHH
Confidence 9999999999999987653 23 358999999999999999999999999999 899999987 99 99999999999
Q ss_pred HHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcccC
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLE 203 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (487)
++|+.+|++.+.++... ..-...+.+..|.....+
T Consensus 211 ~lLl~~Ga~in~~~~~~-------~~l~~~e~~~~ll~~~~~ 245 (284)
T PHA02791 211 QALFKYDINIYSVNLEN-------VLLDDAEIAKMIIEKHVE 245 (284)
T ss_pred HHHHHCCCCCccCcccC-------ccCCCHHHHHHHHHhhhh
Confidence 99999999998888532 222444455555544433
No 5
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.96 E-value=1.2e-29 Score=252.84 Aligned_cols=177 Identities=26% Similarity=0.217 Sum_probs=154.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.|.+|-|+|||||.+++++++++|+++|+++|..+ .-|.||||||+++ |++.+|++|+++|||++++ |.+|.|+||
T Consensus 74 ~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~-G~~~vv~lLlqhGAdpt~~--D~~G~~~lH 150 (600)
T KOG0509|consen 74 PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARN-GHISVVDLLLQHGADPTLK--DKQGLTPLH 150 (600)
T ss_pred CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHc-CcHHHHHHHHHcCCCCcee--cCCCCcHHH
Confidence 46788899999999999999999999999999888 6788999999999 9999999999999999998 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHhhhcCCHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLAPQLLSRKV 160 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a~~~~~~~~ 160 (487)
+|++.|+.-+|-+||.+|+|++.+|.+|+||||+|+.+|+...++.|++.|+.+. ..| ..|.|||| +|...++.++
T Consensus 151 la~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~--~~d~~~g~TpLH-wa~~~gN~~~ 227 (600)
T KOG0509|consen 151 LAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLL--LTDDNHGNTPLH-WAVVGGNLTA 227 (600)
T ss_pred HHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccc--ccccccCCchHH-HHHhcCCcce
Confidence 9999999999999999999999999999999999999999888899999999888 666 88999999 8888888888
Q ss_pred HHHhhcCCCCCCCCCCccchhcccc
Q 040660 161 WVAVLPTGSRNPTKPFKLELAIYPS 185 (487)
Q Consensus 161 ~~~Ll~~g~~~~~~~~~~~~~~~~~ 185 (487)
+.+|++.|++.+..+.+++..+..+
T Consensus 228 v~Ll~~g~~~~d~~~~~g~tp~~LA 252 (600)
T KOG0509|consen 228 VKLLLEGGADLDKTNTNGKTPFDLA 252 (600)
T ss_pred EehhhhcCCcccccccCCCCHHHHH
Confidence 8877788888877776666555544
No 6
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.96 E-value=5.8e-28 Score=248.59 Aligned_cols=205 Identities=19% Similarity=0.271 Sum_probs=176.2
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC-----------------
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK----------------- 66 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~----------------- 66 (487)
+++|.||||+|++.|+.++|++|++.|++++..+..|.||||+|+.. |+.+++++|+++|++
T Consensus 32 ~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~-~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~l 110 (434)
T PHA02874 32 VDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKI-GAHDIIKLLIDNGVDTSILPIPCIEKDMIKTI 110 (434)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCcchhccCCHHHHHHH
Confidence 46789999999999999999999999999999999999999999999 999999999987754
Q ss_pred ------ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccc
Q 040660 67 ------VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLR 140 (487)
Q Consensus 67 ------~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~ 140 (487)
++.+ |..|.||||+|+..|+.++|++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 111 l~~g~d~n~~--~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n--~~ 186 (434)
T PHA02874 111 LDCGIDVNIK--DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN--VK 186 (434)
T ss_pred HHCcCCCCCC--CCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC--CC
Confidence 4554 8899999999999999999999999999999999999999999999999999999999999998 89
Q ss_pred ccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcccCCCCCCCCCCce
Q 040660 141 ELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKANLEEPKFQHSDPSV 214 (487)
Q Consensus 141 d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 214 (487)
+..|.|||| .|+..++.+++++|++.|++...++..+..+++.+...+.......+.+..++..+..+.+|++
T Consensus 187 ~~~g~tpL~-~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~~i~~Ll~~~~in~~d~~G~TpLh 259 (434)
T PHA02874 187 DNNGESPLH-NAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIELLINNASINDQDIDGSTPLH 259 (434)
T ss_pred CCCCCCHHH-HHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChHHHHHHHcCCCCCCcCCCCCCHHH
Confidence 999999999 8999999999999999999988777777777766665444333332333444444444444444
No 7
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.96 E-value=6.2e-28 Score=251.26 Aligned_cols=204 Identities=24% Similarity=0.267 Sum_probs=173.8
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcH-------------------------------
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLY------------------------------- 54 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~------------------------------- 54 (487)
.+.||||+|++.|+.++|++|+++|+++|.+|..|.||||+||.. |+.
T Consensus 36 ~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ 114 (477)
T PHA02878 36 IPFIPLHQAVEARNLDVVKSLLTRGHNVNQPDHRDLTPLHIICKE-PNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNV 114 (477)
T ss_pred cCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHC-ccHhHHHHHHHHHhccccccchhhHHHHHHcCCH
Confidence 577999999999999999999999999999999999999999976 432
Q ss_pred ---------------------------------HHHHHHHHcCCCccccCCCCC-CCcHHHHHHHhCCHHHHHHHHHcCC
Q 040660 55 ---------------------------------DVAKTLIELGAKVDAYRPGRH-GGTPLHHAAKRGLERTVKLLLSYGA 100 (487)
Q Consensus 55 ---------------------------------~~v~~Ll~~ga~~~~~~~d~~-g~TpLh~Aa~~g~~~~v~~Ll~~ga 100 (487)
+++++|+++|++++.. |.. |.||||+|+..|+.+++++|+++|+
T Consensus 115 ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~--~~~~g~tpLh~A~~~~~~~iv~~Ll~~ga 192 (477)
T PHA02878 115 EIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMK--DRHKGNTALHYATENKDQRLTELLLSYGA 192 (477)
T ss_pred HHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCcc--CCCCCCCHHHHHHhCCCHHHHHHHHHCCC
Confidence 3777888889999987 777 9999999999999999999999999
Q ss_pred CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh-hcCCHHHHHHhhcCCCCCCCCCC-cc
Q 040660 101 NALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP-QLLSRKVWVAVLPTGSRNPTKPF-KL 178 (487)
Q Consensus 101 ~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~-~~~~~~~~~~Ll~~g~~~~~~~~-~~ 178 (487)
+++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+ ..++.+++++|+++|++.+.++. .+
T Consensus 193 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in--~~d~~g~TpLh-~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g 269 (477)
T PHA02878 193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD--ARDKCGNTPLH-ISVGYCKDYDILKLLLEHGVDVNAKSYILG 269 (477)
T ss_pred CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHhcCCHHHHHHHHHcCCCCCccCCCCC
Confidence 999999999999999999999999999999999999 99999999999 555 45789999999999999987764 46
Q ss_pred chhccccccccchHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660 179 ELAIYPSLLDARPRMVIALW--KANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~i~ 217 (487)
..+++.+. .....+..|. ++.++..+..+.+|+....
T Consensus 270 ~TpLh~A~--~~~~~v~~Ll~~gadin~~d~~g~TpL~~A~ 308 (477)
T PHA02878 270 LTALHSSI--KSERKLKLLLEYGADINSLNSYKLTPLSSAV 308 (477)
T ss_pred CCHHHHHc--cCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 66666663 3344444443 4555566666777766544
No 8
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.6e-27 Score=219.96 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=152.1
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC-CcHHHHHHHHHcCCCccccCCC-CCCCcHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP-GLYDVAKTLIELGAKVDAYRPG-RHGGTPLH 81 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~-g~~~~v~~Ll~~ga~~~~~~~d-~~g~TpLh 81 (487)
.+.+.||||+|+..|+.++|+.|++. ++..|..|.||||+|+... ++.+++++|+++|++++.+ + ..|.||||
T Consensus 18 ~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~--~~~~g~TpLh 92 (209)
T PHA02859 18 FYRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFK--TRDNNLSALH 92 (209)
T ss_pred hhccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCcc--CCCCCCCHHH
Confidence 35678999999999999999999975 5678899999999999861 4899999999999999987 5 58999999
Q ss_pred HHHHh---CCHHHHHHHHHcCCCcccccCCCCCHHHHHHH--cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcC
Q 040660 82 HAAKR---GLERTVKLLLSYGANALVLNDDCQTPLEVARA--KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLL 156 (487)
Q Consensus 82 ~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~--~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~ 156 (487)
+|+.. ++.+++++|+++|++++.+|..|.||||+|+. .++.+++++|+++|++++ .+|..|.||||.++...+
T Consensus 93 ~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin--~~d~~g~t~Lh~~a~~~~ 170 (209)
T PHA02859 93 HYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL--NKDFDNNNILYSYILFHS 170 (209)
T ss_pred HHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--cccCCCCcHHHHHHHhcC
Confidence 98864 47999999999999999999999999999986 468999999999999999 999999999996567788
Q ss_pred CHHHHHHhhcCCCCCCCCCCccchhc
Q 040660 157 SRKVWVAVLPTGSRNPTKPFKLELAI 182 (487)
Q Consensus 157 ~~~~~~~Ll~~g~~~~~~~~~~~~~~ 182 (487)
+.+++++|+++|++.+.++..+..++
T Consensus 171 ~~~iv~~Ll~~Gadi~~~d~~g~tpl 196 (209)
T PHA02859 171 DKKIFDFLTSLGIDINETNKSGYNCY 196 (209)
T ss_pred CHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 99999999999999887775444333
No 9
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.95 E-value=2.6e-27 Score=242.48 Aligned_cols=191 Identities=20% Similarity=0.168 Sum_probs=158.8
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
+.+|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|++.|++++.. .+..|.||||+|
T Consensus 32 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~-~~~~g~tpL~~A 109 (413)
T PHA02875 32 IYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEE-GDVKAVEELLDLGKFADDV-FYKDGMTPLHLA 109 (413)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHC-CCHHHHHHHHHcCCccccc-ccCCCCCHHHHH
Confidence 34688888888888888888888888888888778888888888888 8888888888888766533 266799999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA 163 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~ 163 (487)
+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++
T Consensus 110 ~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~TpL~-~A~~~g~~eiv~~ 186 (413)
T PHA02875 110 TILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD--IEDCCGCTPLI-IAMAKGDIAICKM 186 (413)
T ss_pred HHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988 88999999999 8888899999999
Q ss_pred hhcCCCCCCCCCCccc-hhccccccccchHHHHHHHh
Q 040660 164 VLPTGSRNPTKPFKLE-LAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 164 Ll~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~ 199 (487)
|++.|++.+..+..+. ..++.+...+....+..|..
T Consensus 187 Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~ 223 (413)
T PHA02875 187 LLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIK 223 (413)
T ss_pred HHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHH
Confidence 9999999877765554 33444666666666666654
No 10
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.95 E-value=6.6e-27 Score=244.23 Aligned_cols=189 Identities=20% Similarity=0.213 Sum_probs=137.0
Q ss_pred CCCchHHHHHHH--HcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660 4 QQSKEELLYQQV--NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGAKVDAYRPGRHGGTP 79 (487)
Q Consensus 4 d~~g~t~L~~Aa--~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga~~~~~~~d~~g~Tp 79 (487)
|..|.||||+|+ ..|+.++|++|+++|++++..+..|.||||+|+.. | +.+++++|+++|++++.+ |..|.||
T Consensus 103 d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~iv~~Ll~~g~din~~--d~~g~tp 179 (480)
T PHA03100 103 DNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLES-NKIDLKILKLLIDKGVDINAK--NRYGYTP 179 (480)
T ss_pred CCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCChHHHHHHHHHCCCCcccc--cCCCCCH
Confidence 456777777777 77777777777777777777777777777777777 6 677777777777777766 6677777
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCcccccCCC------CCHHHHHHHcCC--HHHHHHHHhCCCcccccccccCCCCHHHHH
Q 040660 80 LHHAAKRGLERTVKLLLSYGANALVLNDDC------QTPLEVARAKGF--TNVVRAIENHICIFSGWLRELYGPGFLELL 151 (487)
Q Consensus 80 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g------~TpL~~A~~~g~--~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~ 151 (487)
||+|+..|+.+++++|+++|++++..+..| .||||+|+..|+ .++|++|+++|++++ .+|..|.|||| .
T Consensus 180 L~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din--~~d~~g~TpL~-~ 256 (480)
T PHA03100 180 LHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN--IKDVYGFTPLH-Y 256 (480)
T ss_pred HHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC--CCCCCCCCHHH-H
Confidence 777777777777777777777777777766 677777777777 777777777777777 77777777777 6
Q ss_pred hhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 152 APQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 152 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
|+..++.+++++|++.|++.+..+..+..++..+........+..|.
T Consensus 257 A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll 303 (480)
T PHA03100 257 AVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLL 303 (480)
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHH
Confidence 77777777777777777777777766666666666655555555544
No 11
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=99.95 E-value=1.5e-27 Score=238.02 Aligned_cols=205 Identities=27% Similarity=0.279 Sum_probs=178.5
Q ss_pred hHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 8 EELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
...++.|++.|+++.|+.|++. |.+++..|.+|.|+||||+.+ ++++++++||++|+++|... ..-+.||||||+++
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiN-Nrl~v~r~li~~gadvn~~g-G~l~stPLHWAar~ 122 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAIN-NRLDVARYLISHGADVNAIG-GVLGSTPLHWAARN 122 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHc-CcHHHHHHHHHcCCCccccC-CCCCCCcchHHHHc
Confidence 4678899999999999999999 999999999999999999999 99999999999999999983 47899999999999
Q ss_pred CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhc
Q 040660 87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP 166 (487)
Q Consensus 87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~ 166 (487)
|+..+|++|+++|||++++|.+|.|+||+|+..||.-+|-+|+.+|++++ .+|.+|+|||| +|+..+....+..|+.
T Consensus 123 G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d--~~D~~grTpLm-wAaykg~~~~v~~LL~ 199 (600)
T KOG0509|consen 123 GHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID--LRDNNGRTPLM-WAAYKGFALFVRRLLK 199 (600)
T ss_pred CcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC--CcCCCCCCHHH-HHHHhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999 7888777777999999
Q ss_pred CCCCCCCCC-CccchhccccccccchHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660 167 TGSRNPTKP-FKLELAIYPSLLDARPRMVIALW--KANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 167 ~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~i~ 217 (487)
.|+....++ ..+..++..+...+....+..+. +...+..+..+++|..+..
T Consensus 200 f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~ 253 (600)
T KOG0509|consen 200 FGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQ 253 (600)
T ss_pred hcccccccccccCCchHHHHHhcCCcceEehhhhcCCcccccccCCCCHHHHHH
Confidence 999887777 77778887777655555544222 3344455555666666543
No 12
>PHA02946 ankyin-like protein; Provisional
Probab=99.95 E-value=1.1e-26 Score=237.96 Aligned_cols=181 Identities=17% Similarity=0.105 Sum_probs=130.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCCCccccCCCCCCCcHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGAKVDAYRPGRHGGTPL 80 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga~~~~~~~d~~g~TpL 80 (487)
.|.+|+||||+|++.|+.++|++||++|+++|.+|..|.||||+|+.. + ..+++++|+++|++++.. .|..|.|||
T Consensus 68 ~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~-~~~~~e~v~lLl~~Gadin~~-~d~~g~tpL 145 (446)
T PHA02946 68 TDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGT-DDEVIERINLLVQYGAKINNS-VDEEGCGPL 145 (446)
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHc-CCchHHHHHHHHHcCCCcccc-cCCCCCcHH
Confidence 356677888888887888888888877777777777788888877765 3 367777777777777742 167777777
Q ss_pred HHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC--CHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc--C
Q 040660 81 HHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG--FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL--L 156 (487)
Q Consensus 81 h~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~--~ 156 (487)
| |+..|+.+++++|++.|++++.+|..|+||||+|+..+ +.+++++|+++|++++ .+|..|.|||| +|+.. +
T Consensus 146 ~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin--~~d~~G~TpLH-~Aa~~~~~ 221 (446)
T PHA02946 146 L-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPS--KPDHDGNTPLH-IVCSKTVK 221 (446)
T ss_pred H-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCCC
Confidence 6 55567777777777777777777777888887776644 4577778888887777 77777888888 55544 3
Q ss_pred CHHHHHHhhcCCCCCCCCCCccchhccccccccc
Q 040660 157 SRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDAR 190 (487)
Q Consensus 157 ~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
+.+++++|+. |++.+.++..+..++..+.....
T Consensus 222 ~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~ 254 (446)
T PHA02946 222 NVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLS 254 (446)
T ss_pred cHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCC
Confidence 6677777774 67777777667666666555444
No 13
>PHA02878 ankyrin repeat protein; Provisional
Probab=99.95 E-value=1.3e-26 Score=241.32 Aligned_cols=158 Identities=22% Similarity=0.221 Sum_probs=145.0
Q ss_pred HHHHHHHcCCCCCccCCC-CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 040660 22 GIKALCRDGAGLEWIDKE-GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGA 100 (487)
Q Consensus 22 ~v~~Ll~~g~~~~~~d~~-G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga 100 (487)
++++|+++|++++.+|.. |.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.|+
T Consensus 149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~-~~~~iv~~Ll~~gad~n~~--d~~g~tpLh~A~~~~~~~iv~~Ll~~ga 225 (477)
T PHA02878 149 ITKLLLSYGADINMKDRHKGNTALHYATEN-KDQRLTELLLSYGANVNIP--DKTNNSPLHHAVKHYNKPIVHILLENGA 225 (477)
T ss_pred HHHHHHHcCCCCCccCCCCCCCHHHHHHhC-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 667777889999999988 99999999999 9999999999999999998 9999999999999999999999999999
Q ss_pred CcccccCCCCCHHHHHHHc-CCHHHHHHHHhCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCcc
Q 040660 101 NALVLNDDCQTPLEVARAK-GFTNVVRAIENHICIFSGWLREL-YGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKL 178 (487)
Q Consensus 101 ~~~~~d~~g~TpL~~A~~~-g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~ 178 (487)
+++.+|..|+||||+|+.. ++.+++++|+++|++++ .++. .|.|||| .| .++.+++++|+++|++.+..+..+
T Consensus 226 ~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn--~~~~~~g~TpLh-~A--~~~~~~v~~Ll~~gadin~~d~~g 300 (477)
T PHA02878 226 STDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVN--AKSYILGLTALH-SS--IKSERKLKLLLEYGADINSLNSYK 300 (477)
T ss_pred CCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCC--ccCCCCCCCHHH-HH--ccCHHHHHHHHHCCCCCCCcCCCC
Confidence 9999999999999999976 78999999999999998 7775 8999999 66 567899999999999999988888
Q ss_pred chhcccccc
Q 040660 179 ELAIYPSLL 187 (487)
Q Consensus 179 ~~~~~~~~~ 187 (487)
..++..+..
T Consensus 301 ~TpL~~A~~ 309 (477)
T PHA02878 301 LTPLSSAVK 309 (477)
T ss_pred CCHHHHHHH
Confidence 777776654
No 14
>PHA02875 ankyrin repeat protein; Provisional
Probab=99.94 E-value=4.2e-26 Score=233.55 Aligned_cols=188 Identities=17% Similarity=0.098 Sum_probs=175.2
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
.+++||.|++.|+.+++++|+++|++++.++..|.||||+|+.. |+.+++++|+++|++++.. +..+.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~~t~L~~A~~~ 78 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKF-RDSEAIKLLMKHGAIPDVK--YPDIESELHDAVEE 78 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccc--CCCcccHHHHHHHC
Confidence 57899999999999999999999999999999999999999999 9999999999999999987 78899999999999
Q ss_pred CCHHHHHHHHHcCCCcc-cccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 87 GLERTVKLLLSYGANAL-VLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 87 g~~~~v~~Ll~~ga~~~-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
|+.+++++|++.|++++ ..+.+|+||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..++.+++++|+
T Consensus 79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~--~~~~~g~tpLh-~A~~~~~~~~v~~Ll 155 (413)
T PHA02875 79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD--IPNTDKFSPLH-LAVMMGDIKGIELLI 155 (413)
T ss_pred CCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHH
Confidence 99999999999998764 467789999999999999999999999999999 99999999999 899999999999999
Q ss_pred cCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660 166 PTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA 200 (487)
Q Consensus 166 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (487)
.+|++.+.++..+..+++.+...+....+..|...
T Consensus 156 ~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ 190 (413)
T PHA02875 156 DHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDS 190 (413)
T ss_pred hcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 99999998888888888888888888877776643
No 15
>PHA02874 ankyrin repeat protein; Provisional
Probab=99.94 E-value=3e-26 Score=235.92 Aligned_cols=177 Identities=23% Similarity=0.259 Sum_probs=162.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+
T Consensus 120 ~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~-~~~~iv~~Ll~~g~~~n~~--~~~g~tpL~~ 196 (434)
T PHA02874 120 KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKH-NFFDIIKLLLEKGAYANVK--DNNGESPLHN 196 (434)
T ss_pred CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence 367899999999999999999999999999999999999999999999 9999999999999999988 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh-cCCHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ-LLSRKVW 161 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~-~~~~~~~ 161 (487)
|+..|+.+++++|++.|++++.++..|+||||+|+..++ +++++|+ .|++++ .+|..|.|||| +|+. ....+++
T Consensus 197 A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in--~~d~~G~TpLh-~A~~~~~~~~iv 271 (434)
T PHA02874 197 AAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASIN--DQDIDGSTPLH-HAINPPCDIDII 271 (434)
T ss_pred HHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCC--CcCCCCCCHHH-HHHhcCCcHHHH
Confidence 999999999999999999999999999999999999876 5666666 688888 89999999999 5555 4588999
Q ss_pred HHhhcCCCCCCCCCCccchhcccccc
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLL 187 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~ 187 (487)
++|+.+|++.+.++..+..++..+.+
T Consensus 272 ~~Ll~~gad~n~~d~~g~TpL~~A~~ 297 (434)
T PHA02874 272 DILLYHKADISIKDNKGENPIDTAFK 297 (434)
T ss_pred HHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 99999999999998888877777654
No 16
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.94 E-value=1.6e-26 Score=244.45 Aligned_cols=175 Identities=17% Similarity=0.158 Sum_probs=155.5
Q ss_pred CCCchHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc--HHHHHHHHHcCCCccccCCCCCCCcH
Q 040660 4 QQSKEELLYQQVN--YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL--YDVAKTLIELGAKVDAYRPGRHGGTP 79 (487)
Q Consensus 4 d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~--~~~v~~Ll~~ga~~~~~~~d~~g~Tp 79 (487)
|..|.||||+|+. .++.++|++|+++|+++|.+|..|.||||+|+.. |+ .++|++||++|+++|.+ |..|+||
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~-g~~~~eIVklLLe~GADVN~k--D~~G~TP 250 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLIT-GNVCASVIKKIIELGGDMDMK--CVNGMSP 250 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCCCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 6679999999875 4689999999999999999999999999999999 74 58999999999999998 8999999
Q ss_pred HHHH-------------------------------------HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH--cC
Q 040660 80 LHHA-------------------------------------AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA--KG 120 (487)
Q Consensus 80 Lh~A-------------------------------------a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~--~g 120 (487)
||+| ++.|+.+++++|++.|++++.+|..|+||||+|+. .+
T Consensus 251 Lh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~ 330 (764)
T PHA02716 251 IMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNI 330 (764)
T ss_pred HHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCC
Confidence 9975 44578899999999999999999999999999864 56
Q ss_pred CHHHHHHHHhCCCcccccccccCCCCHHHHHhh-------------hcCCHHHHHHhhcCCCCCCCCCCccchhcc
Q 040660 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAP-------------QLLSRKVWVAVLPTGSRNPTKPFKLELAIY 183 (487)
Q Consensus 121 ~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~-------------~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~ 183 (487)
+.++|++|+++|++++ .+|..|.||||+++. ..++.+++++|+++|++.+.++..+..+++
T Consensus 331 ~~eIVklLLe~GADIN--~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh 404 (764)
T PHA02716 331 STDIIKLLHEYGNDLN--EPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT 404 (764)
T ss_pred CchHHHHHHHcCCCCc--cCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence 8999999999999999 999999999994332 136789999999999999988877777775
No 17
>PHA03100 ankyrin repeat protein; Provisional
Probab=99.94 E-value=2.3e-26 Score=240.16 Aligned_cols=208 Identities=22% Similarity=0.199 Sum_probs=156.1
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHH-----HHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIA-----ACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~-----A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
+..+.||||+|++.|+.++|++|+++|++++..+..|.||||+ |+.. ++.+++++|+++|++++.. |..|.|
T Consensus 32 ~~~~~t~L~~A~~~~~~~ivk~Ll~~g~~~~~~~~~~~t~L~~~~~~~a~~~-~~~~iv~~Ll~~ga~i~~~--d~~g~t 108 (480)
T PHA03100 32 YKKPVLPLYLAKEARNIDVVKILLDNGADINSSTKNNSTPLHYLSNIKYNLT-DVKEIVKLLLEYGANVNAP--DNNGIT 108 (480)
T ss_pred hcccchhhhhhhccCCHHHHHHHHHcCCCCCCccccCcCHHHHHHHHHHHhh-chHHHHHHHHHCCCCCCCC--CCCCCc
Confidence 4567788888888888888888888888888888888888888 8888 8888888888888888776 778888
Q ss_pred HHHHHH--HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC--CHHHHHHHHhCCCcccccccccCCCCHHHHHhhh
Q 040660 79 PLHHAA--KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG--FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ 154 (487)
Q Consensus 79 pLh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~ 154 (487)
|||+|+ ..|+.+++++|+++|++++..|..|.||||+|+..| +.+++++|+++|++++ .+|..|.|||| +|..
T Consensus 109 pL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din--~~d~~g~tpL~-~A~~ 185 (480)
T PHA03100 109 PLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN--AKNRYGYTPLH-IAVE 185 (480)
T ss_pred hhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcc--cccCCCCCHHH-HHHH
Confidence 888888 888888888888888888888888888888888888 7888888888888877 77778888888 7777
Q ss_pred cCCHHHHHHhhcCCCCCCCCCCcc------chhccccccccc--hHHHHHHHh--cccCCCCCCCCCCceeee
Q 040660 155 LLSRKVWVAVLPTGSRNPTKPFKL------ELAIYPSLLDAR--PRMVIALWK--ANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 155 ~~~~~~~~~Ll~~g~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~l~~--~~~~~~~~~~~~~~~~i~ 217 (487)
.++.+++++|+++|++.+..+..+ ...+..+...+. ...+..|.. ..++..+..+.+|++...
T Consensus 186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~ 258 (480)
T PHA03100 186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAV 258 (480)
T ss_pred hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH
Confidence 778888888888888776665444 444444444444 445554443 344455556666665544
No 18
>PHA02859 ankyrin repeat protein; Provisional
Probab=99.94 E-value=4.3e-26 Score=210.43 Aligned_cols=146 Identities=17% Similarity=0.116 Sum_probs=133.1
Q ss_pred CCCCchHHHHHHHHcC--CHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCCCC
Q 040660 3 LQQSKEELLYQQVNYG--NVEGIKALCRDGAGLEWID-KEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRHGG 77 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~ 77 (487)
.++.|.||||+|+..+ +.+++++|+++|++++.++ ..|.||||+|+... ++.+++++|+++|+++|.+ |..|.
T Consensus 47 ~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~--d~~G~ 124 (209)
T PHA02859 47 CNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEE--DEDGK 124 (209)
T ss_pred cCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCc--CCCCC
Confidence 4778999999999854 8999999999999999997 48999999988641 4799999999999999998 99999
Q ss_pred cHHHHHHH--hCCHHHHHHHHHcCCCcccccCCCCCHHHH-HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660 78 TPLHHAAK--RGLERTVKLLLSYGANALVLNDDCQTPLEV-ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP 153 (487)
Q Consensus 78 TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~-A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~ 153 (487)
||||+|+. .++.+++++|++.|++++.+|.+|.||||. |+..++.+++++|+++|++++ .+|..|.|||+ +|.
T Consensus 125 TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~--~~d~~g~tpl~-la~ 200 (209)
T PHA02859 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDIN--ETNKSGYNCYD-LIK 200 (209)
T ss_pred CHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHh
Confidence 99999986 468999999999999999999999999995 567889999999999999999 99999999999 554
No 19
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.94 E-value=6.7e-27 Score=224.06 Aligned_cols=158 Identities=26% Similarity=0.288 Sum_probs=150.4
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
-+|.+||..|+..||+++|+.|+.+|+++|......-|||..||.. |++++|++|+++|+|+++. |..|.|.||+||
T Consensus 82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfD-G~leivKyLvE~gad~~Ia--nrhGhTcLmIa~ 158 (615)
T KOG0508|consen 82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFD-GHLEIVKYLVEHGADPEIA--NRHGHTCLMIAC 158 (615)
T ss_pred cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhc-chhHHHHHHHHcCCCCccc--ccCCCeeEEeee
Confidence 3578999999999999999999999999998888888999999999 9999999999999999998 999999999999
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV 164 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L 164 (487)
..|+.+++++|++.|+|+|.++..|+|+||.+++.|+++++++|+++|+.+ ..|.+|.|||. .|+..++.++++.|
T Consensus 159 ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i---~~d~~GmtPL~-~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 159 YKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI---DVDGHGMTPLL-LAAVTGHTDIVERL 234 (615)
T ss_pred ccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee---eecCCCCchHH-HHhhhcchHHHHHH
Confidence 999999999999999999999999999999999999999999999999988 58888999999 99999999999999
Q ss_pred hcCCC
Q 040660 165 LPTGS 169 (487)
Q Consensus 165 l~~g~ 169 (487)
++...
T Consensus 235 ~~~~~ 239 (615)
T KOG0508|consen 235 LQCET 239 (615)
T ss_pred hcCCc
Confidence 97433
No 20
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.94 E-value=8.1e-27 Score=217.00 Aligned_cols=158 Identities=27% Similarity=0.387 Sum_probs=145.9
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCChHHHHHHhC----CCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDG-AGLEWIDKEGKTPLIAACMN----PGLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g-~~~~~~d~~G~TpL~~A~~~----~g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
|.+|+|+||||+.++++++|+.||+.| +++|.+|.-|+||+|+++.. ..+.++|..|.+.| |+|++ ....|.|
T Consensus 265 DsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaK-AsQ~gQT 342 (452)
T KOG0514|consen 265 DSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAK-ASQHGQT 342 (452)
T ss_pred cCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchh-hhhhcch
Confidence 789999999999999999999999997 78999999999999999865 25678999999995 88887 4788999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccccccccCCCCHHHHHhhhcCC
Q 040660 79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH-ICIFSGWLRELYGPGFLELLAPQLLS 157 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~G~t~L~~~a~~~~~ 157 (487)
+||+|+.+|+.++|+.||.+|+|+|++|.+|.|+||+|+++||.+||++||.. ++++. +.|.+|.|+|. +|...++
T Consensus 343 ALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~s--LtD~DgSTAl~-IAleagh 419 (452)
T KOG0514|consen 343 ALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDIS--LTDVDGSTALS-IALEAGH 419 (452)
T ss_pred hhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccce--eecCCCchhhh-hHHhcCc
Confidence 99999999999999999999999999999999999999999999999999966 57887 99999999999 9999999
Q ss_pred HHHHHHhhc
Q 040660 158 RKVWVAVLP 166 (487)
Q Consensus 158 ~~~~~~Ll~ 166 (487)
.||..+|..
T Consensus 420 ~eIa~mlYa 428 (452)
T KOG0514|consen 420 REIAVMLYA 428 (452)
T ss_pred hHHHHHHHH
Confidence 999887754
No 21
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=221.96 Aligned_cols=190 Identities=23% Similarity=0.226 Sum_probs=164.6
Q ss_pred CCCCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCcc--------CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCC
Q 040660 2 GLQQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWI--------DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP 72 (487)
Q Consensus 2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~--------d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~ 72 (487)
+.+.+|.|||.+||++||.++|++|+++ ++++... .-.|-+||-.|+.. ||+++|++|+++|+++|..
T Consensus 37 ~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaA-GHl~vVk~L~~~ga~VN~t-- 113 (615)
T KOG0508|consen 37 GEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAA-GHLEVVKLLLRRGASVNDT-- 113 (615)
T ss_pred ccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhcc-CcHHHHHHHHHhcCccccc--
Confidence 5678899999999999999999999995 7776542 23678888887777 9999999999999999986
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHh
Q 040660 73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLA 152 (487)
Q Consensus 73 d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a 152 (487)
.....|||--||..|+.++|++|+++|+|+++.|..|.|.||+|+.+||.+|+++|++.|++++ .++..|+|+|| .+
T Consensus 114 T~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn--~ks~kGNTALH-~c 190 (615)
T KOG0508|consen 114 TRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN--AKSYKGNTALH-DC 190 (615)
T ss_pred cccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc--hhcccCchHHH-hh
Confidence 7788899999999999999999999999999999999999999999999999999999999999 99999999999 89
Q ss_pred hhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 153 PQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 153 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
+..++.+++++|+.+|+.+.... .+-..+..+...+....+..|.
T Consensus 191 aEsG~vdivq~Ll~~ga~i~~d~-~GmtPL~~Aa~tG~~~iVe~L~ 235 (615)
T KOG0508|consen 191 AESGSVDIVQLLLKHGAKIDVDG-HGMTPLLLAAVTGHTDIVERLL 235 (615)
T ss_pred hhcccHHHHHHHHhCCceeeecC-CCCchHHHHhhhcchHHHHHHh
Confidence 99999999999999999875444 3544444444444444444443
No 22
>PHA02946 ankyin-like protein; Provisional
Probab=99.94 E-value=1.6e-25 Score=229.44 Aligned_cols=206 Identities=14% Similarity=0.120 Sum_probs=175.1
Q ss_pred chHHHHHHH--HcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 7 KEELLYQQV--NYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 7 g~t~L~~Aa--~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
+.++||.++ ..++.++|++|+++|+++|.+|..|+||||+|+.. |+.+++++||++|++++.+ |..|.||||+|+
T Consensus 37 ~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~-g~~eiv~lLL~~GAdin~~--d~~g~TpLh~A~ 113 (446)
T PHA02946 37 NYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKI-NNNRIVAMLLTHGADPNAC--DKQHKTPLYYLS 113 (446)
T ss_pred CChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHHHH
Confidence 358999876 44578999999999999999999999999999999 9999999999999999998 999999999999
Q ss_pred HhCC--HHHHHHHHHcCCCccc-ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh--cCCHH
Q 040660 85 KRGL--ERTVKLLLSYGANALV-LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ--LLSRK 159 (487)
Q Consensus 85 ~~g~--~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~--~~~~~ 159 (487)
..++ .+++++|+++|++++. .|.+|.|||| |+..++.+++++|+++|++++ .+|..|.|||| .|.. ..+.+
T Consensus 114 ~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~--~~d~~G~t~Lh-~A~~~~~~~~~ 189 (446)
T PHA02946 114 GTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEAR--IVDKFGKNHIH-RHLMSDNPKAS 189 (446)
T ss_pred HcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccccc--ccCCCCCCHHH-HHHHhcCCCHH
Confidence 8764 7999999999999995 6899999997 667799999999999999999 99999999999 4443 34578
Q ss_pred HHHHhhcCCCCCCCCCCccchhcccccccc--chHHHHHHH-hcccCCCCCCCCCCceeeecC
Q 040660 160 VWVAVLPTGSRNPTKPFKLELAIYPSLLDA--RPRMVIALW-KANLEEPKFQHSDPSVTIVDN 219 (487)
Q Consensus 160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~-~~~~~~~~~~~~~~~~~i~~~ 219 (487)
++++|+++|++.+.++..+..+++.+...+ ....+..|. ...++..+..+.+|+.+....
T Consensus 190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~ 252 (446)
T PHA02946 190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKT 252 (446)
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence 999999999999999988888888877643 334443333 556667777788887765543
No 23
>PHA02798 ankyrin-like protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=233.42 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=167.2
Q ss_pred CCCCchHHHHHHHHc-----CCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCC
Q 040660 3 LQQSKEELLYQQVNY-----GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRH 75 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~-----g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~ 75 (487)
.|..|.||||+|+.. ++.+++++|+++|+++|.+|..|.||||+|+..+ ++.+++++|+++|++++.+ |..
T Consensus 67 ~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~--d~~ 144 (489)
T PHA02798 67 LDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLL--DKD 144 (489)
T ss_pred CCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCcccc--CCC
Confidence 467899999998864 6789999999999999999999999999999872 3789999999999999998 899
Q ss_pred CCcHHHHHHHhCC---HHHHHHHHHcCCCccccc-CCCCCHHHHHHHc----CCHHHHHHHHhCCCcccc----------
Q 040660 76 GGTPLHHAAKRGL---ERTVKLLLSYGANALVLN-DDCQTPLEVARAK----GFTNVVRAIENHICIFSG---------- 137 (487)
Q Consensus 76 g~TpLh~Aa~~g~---~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~----g~~~~v~~Ll~~ga~~~~---------- 137 (487)
|.||||+|++.|+ .+++++|++.|++++..+ ..|.||||.++.. ++.+++++|+++|++++.
T Consensus 145 g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~ 224 (489)
T PHA02798 145 GFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFM 224 (489)
T ss_pred CCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHH
Confidence 9999999999988 899999999999999885 5789999988764 478999999998876541
Q ss_pred ---------------------------cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccc
Q 040660 138 ---------------------------WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDAR 190 (487)
Q Consensus 138 ---------------------------~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~ 190 (487)
..+|..|.|||| .|+..++.+++++|++.|++.+..+..+..+++.+...+.
T Consensus 225 ~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~-~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~ 303 (489)
T PHA02798 225 EYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLY-YSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENES 303 (489)
T ss_pred HHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHH-HHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCc
Confidence 135678999999 8889999999999999999999999888888888887777
Q ss_pred hHHHHHHHh
Q 040660 191 PRMVIALWK 199 (487)
Q Consensus 191 ~~~~~~l~~ 199 (487)
...+..+..
T Consensus 304 ~~iv~~lL~ 312 (489)
T PHA02798 304 KFIFNSILN 312 (489)
T ss_pred HHHHHHHHc
Confidence 777666543
No 24
>PHA03095 ankyrin-like protein; Provisional
Probab=99.93 E-value=2.7e-25 Score=231.61 Aligned_cols=209 Identities=19% Similarity=0.156 Sum_probs=164.9
Q ss_pred CCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC-cHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660 4 QQSKEELLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG-LYDVAKTLIELGAKVDAYRPGRHGGTP 79 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g-~~~~v~~Ll~~ga~~~~~~~d~~g~Tp 79 (487)
+..|.||||+|+..| +.+++++|++.|+++|.+|..|.||||+|+.. | +.+++++|+++|++++.+ |..|.||
T Consensus 44 ~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~-~~~~~iv~lLl~~ga~in~~--~~~g~tp 120 (471)
T PHA03095 44 GEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYN-ATTLDVIKLLIKAGADVNAK--DKVGRTP 120 (471)
T ss_pred CCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCcHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 667899999999988 99999999999999999999999999999999 7 699999999999999988 8899999
Q ss_pred HHHHH--HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC--CHHHHHHHHhCCCcccccccccCCCCHHHHHhh-h
Q 040660 80 LHHAA--KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG--FTNVVRAIENHICIFSGWLRELYGPGFLELLAP-Q 154 (487)
Q Consensus 80 Lh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g--~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~-~ 154 (487)
||+|+ ..++.+++++|++.|++++.+|..|.||||+|+..+ +.+++++|+++|++++ ..|..|.||||.++. .
T Consensus 121 Lh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~--~~d~~g~t~Lh~~~~~~ 198 (471)
T PHA03095 121 LHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY--AVDDRFRSLLHHHLQSF 198 (471)
T ss_pred HHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc--ccCCCCCCHHHHHHHHC
Confidence 99999 556889999999999999999999999999988766 5788999999998887 668888888884332 2
Q ss_pred cCCHHHHHHhhcCCCCCCCCCCccchhccccccccchH--HHHHH--HhcccCCCCCCCCCCceeee
Q 040660 155 LLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPR--MVIAL--WKANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 155 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l--~~~~~~~~~~~~~~~~~~i~ 217 (487)
.+..++++.|+..|++.+.++..+..+++.+...+... .+..+ .+..++..+..+.+|++...
T Consensus 199 ~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~ 265 (471)
T PHA03095 199 KPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAA 265 (471)
T ss_pred CCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 45677788888888877777766666666655433221 12112 24445555556666665544
No 25
>PHA02795 ankyrin-like protein; Provisional
Probab=99.93 E-value=2.3e-25 Score=221.24 Aligned_cols=166 Identities=15% Similarity=0.047 Sum_probs=148.3
Q ss_pred CCCchHHHHHHHH--cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-C---CCCCC
Q 040660 4 QQSKEELLYQQVN--YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-P---GRHGG 77 (487)
Q Consensus 4 d~~g~t~L~~Aa~--~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-~---d~~g~ 77 (487)
+++++|+||+++. .|+.++|++|+++|++++.. ++.||||+|+.. ++.+++++|+++|++.+... . +..|.
T Consensus 113 ~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~-~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~ 189 (437)
T PHA02795 113 CNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICK-KESSVVEFILNCGIPDENDVKLDLYKIIQY 189 (437)
T ss_pred cccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHc-CcHHHHHHHHhcCCcccccccchhhhhhcc
Confidence 5678999999999 89999999999999999874 458999999999 99999999999998543220 0 13488
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcC-
Q 040660 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLL- 156 (487)
Q Consensus 78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~- 156 (487)
|++|.|+..++.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| .|+..+
T Consensus 190 t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN--~~d~~G~TpLh-~Aa~~g~ 266 (437)
T PHA02795 190 TRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVN--AVMSNGYTCLD-VAVDRGS 266 (437)
T ss_pred chhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999 99999999999 666655
Q ss_pred -------CHHHHHHhhcCCCCCCCCC
Q 040660 157 -------SRKVWVAVLPTGSRNPTKP 175 (487)
Q Consensus 157 -------~~~~~~~Ll~~g~~~~~~~ 175 (487)
+.+++++|+.+|++.+...
T Consensus 267 ~~~~~~~~~eIvelLL~~gadI~~~~ 292 (437)
T PHA02795 267 VIARRETHLKILEILLREPLSIDCIK 292 (437)
T ss_pred cccccccHHHHHHHHHhCCCCCCchh
Confidence 4799999999999876544
No 26
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=99.93 E-value=1.9e-25 Score=236.26 Aligned_cols=164 Identities=17% Similarity=0.115 Sum_probs=146.4
Q ss_pred CCCCchHHHHHHHHcCC--HHHHHHHHHcCCCCCccCCCCChHHHHHH--------------------------------
Q 040660 3 LQQSKEELLYQQVNYGN--VEGIKALCRDGAGLEWIDKEGKTPLIAAC-------------------------------- 48 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~--~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~-------------------------------- 48 (487)
.|..|.||||+|++.|+ .++|++||++|+++|.+|..|+||||+|+
T Consensus 208 kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~ 287 (764)
T PHA02716 208 QNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHS 287 (764)
T ss_pred CCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHH
Confidence 36789999999999995 59999999999999999999999999753
Q ss_pred -----hCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH--hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH---
Q 040660 49 -----MNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK--RGLERTVKLLLSYGANALVLNDDCQTPLEVARA--- 118 (487)
Q Consensus 49 -----~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~--~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~--- 118 (487)
.. |+.+++++|+++|++++.+ |..|+||||+|+. .++.+++++|++.|++++.+|..|+||||+|+.
T Consensus 288 ~i~AA~~-g~leiVklLLe~GAdIN~k--D~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~la 364 (764)
T PHA02716 288 YITLARN-IDISVVYSFLQPGVKLHYK--DSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLS 364 (764)
T ss_pred HHHHHHc-CCHHHHHHHHhCCCceecc--CCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhh
Confidence 44 7789999999999999998 9999999999875 468899999999999999999999999999875
Q ss_pred -----------cCCHHHHHHHHhCCCcccccccccCCCCHHHHH---hhhcCCHHHHHHhhcCCCCC
Q 040660 119 -----------KGFTNVVRAIENHICIFSGWLRELYGPGFLELL---APQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 119 -----------~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~---a~~~~~~~~~~~Ll~~g~~~ 171 (487)
.++.++|++|+++|++++ .+|..|.||||.+ +...++.+++++|++.|+..
T Consensus 365 v~~~ld~~~~~~~~~eVVklLL~~GADIn--~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~ 429 (764)
T PHA02716 365 VVNILDPETDNDIRLDVIQCLISLGADIT--AVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLN 429 (764)
T ss_pred hhccccccccccChHHHHHHHHHCCCCCC--CcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchh
Confidence 378999999999999999 9999999999932 33457799999999988754
No 27
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.93 E-value=1.3e-25 Score=228.27 Aligned_cols=177 Identities=25% Similarity=0.239 Sum_probs=159.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCC---------------CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCc
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG---------------LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV 67 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---------------~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~ 67 (487)
.+++|.||||.|+..|+.+.++.+|+.|.. +|..|++|.|||||||+. |+.+.++.|+..|+++
T Consensus 221 ~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~-G~~~svd~Ll~~Ga~I 299 (929)
T KOG0510|consen 221 DNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQ-GGPESVDNLLGFGASI 299 (929)
T ss_pred ccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHc-CChhHHHHHHHcCCcc
Confidence 467899999999999999999999998643 355789999999999999 9999999999999999
Q ss_pred cccCCCCCCCcHHHHHHHhCCHHHHHHHHH-cC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc-cccccCC
Q 040660 68 DAYRPGRHGGTPLHHAAKRGLERTVKLLLS-YG-ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSG-WLRELYG 144 (487)
Q Consensus 68 ~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~g-a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~-~~~d~~G 144 (487)
+.+ +.++.||||.||.+|++++|+-||+ .| ...+..|-.|.||||+|+..||..++++|+++|+++.. ...|.+|
T Consensus 300 ~~k--n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg 377 (929)
T KOG0510|consen 300 NSK--NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDG 377 (929)
T ss_pred ccc--CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCC
Confidence 998 8999999999999999999999999 55 55788999999999999999999999999999999762 1349999
Q ss_pred CCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcc
Q 040660 145 PGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIY 183 (487)
Q Consensus 145 ~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~ 183 (487)
.|||| .|+..++..++++|+.+|+++..++..+..++.
T Consensus 378 ~TaLH-~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~ 415 (929)
T KOG0510|consen 378 NTALH-LAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD 415 (929)
T ss_pred chhhh-HHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence 99999 999999999999999999999877755555554
No 28
>PHA03095 ankyrin-like protein; Provisional
Probab=99.93 E-value=5.8e-25 Score=229.08 Aligned_cols=209 Identities=21% Similarity=0.189 Sum_probs=151.8
Q ss_pred CCCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHH--hCCCcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660 3 LQQSKEELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAAC--MNPGLYDVAKTLIELGAKVDAYRPGRHGGTP 79 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~--~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp 79 (487)
.|..|.||||+|+..| +.+++++|+++|++++.+|..|.||||+|+ .. ++.+++++|+++|++++.. |..|.||
T Consensus 79 ~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~-~~~~iv~~Ll~~gad~~~~--d~~g~tp 155 (471)
T PHA03095 79 PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFN-INPKVIRLLLRKGADVNAL--DLYGMTP 155 (471)
T ss_pred CCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCc-CCHHHHHHHHHcCCCCCcc--CCCCCCH
Confidence 3568999999999999 599999999999999999999999999999 44 6789999999999999887 8888888
Q ss_pred HHHHHHhC--CHHHHHHHHHcCCCcccccCCCCCHHHHHHHc--CCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660 80 LHHAAKRG--LERTVKLLLSYGANALVLNDDCQTPLEVARAK--GFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL 155 (487)
Q Consensus 80 Lh~Aa~~g--~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~ 155 (487)
||+|+..+ +.+++++|+++|++++..|..|+||||+|+.. ++.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 156 L~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~--~~d~~g~tpLh-~Aa~~ 232 (471)
T PHA03095 156 LAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA--ATDMLGNTPLH-SMATG 232 (471)
T ss_pred HHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhc
Confidence 88887765 56778888887777777777777777777653 56677777777777766 66666667776 44444
Q ss_pred CCH--HHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660 156 LSR--KVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW--KANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 156 ~~~--~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~i~ 217 (487)
+.. .++..|+..|++.+.++..+..+++.+...+....+..|. ++.+...+..+.+|+....
T Consensus 233 ~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~ 298 (471)
T PHA03095 233 SSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMV 298 (471)
T ss_pred CCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 432 4556666666666666666666666666655555555554 3344444555566655443
No 29
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.93 E-value=1e-24 Score=236.89 Aligned_cols=207 Identities=20% Similarity=0.163 Sum_probs=166.8
Q ss_pred CCCchHHHHHHHHcCCH-HHHHHHHHcCCCCCccCCCCChHHHHHHhCCC-cHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 4 QQSKEELLYQQVNYGNV-EGIKALCRDGAGLEWIDKEGKTPLIAACMNPG-LYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g-~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
|..|.||||+|+..|+. +++++|++.|++++.+|..|.||||+|+.. | ..+++++|+..|++++.. |..|.||||
T Consensus 270 d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~-g~~~~~v~~Ll~~gadin~~--d~~g~TpLh 346 (682)
T PHA02876 270 DDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKN-GYDTENIRTLIMLGADVNAA--DRLYITPLH 346 (682)
T ss_pred CCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHh-CCCHHHHHHHHHcCCCCCCc--ccCCCcHHH
Confidence 56788999999998886 588888999999999999999999999998 6 688999999999999887 888999999
Q ss_pred HHHHh-CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHH
Q 040660 82 HAAKR-GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKV 160 (487)
Q Consensus 82 ~Aa~~-g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~ 160 (487)
+|+.. ++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++ ..+..|.||||+++...+...+
T Consensus 347 ~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~--~~~~~g~T~Lh~A~~~~~~~~~ 424 (682)
T PHA02876 347 QASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE--ALSQKIGTALHFALCGTNPYMS 424 (682)
T ss_pred HHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--ccCCCCCchHHHHHHcCCHHHH
Confidence 99885 46788899999999999999999999999999999999999999999888 8888888999944444555677
Q ss_pred HHHhhcCCCCCCCCCCccchhcccccccc-chHHHHHHH--hcccCCCCCCCCCCcee
Q 040660 161 WVAVLPTGSRNPTKPFKLELAIYPSLLDA-RPRMVIALW--KANLEEPKFQHSDPSVT 215 (487)
Q Consensus 161 ~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~--~~~~~~~~~~~~~~~~~ 215 (487)
+++|+..|++.+.++..+..+++.+...+ ....+..|. ++.++..+..+.+|+..
T Consensus 425 vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~~ 482 (682)
T PHA02876 425 VKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLI 482 (682)
T ss_pred HHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence 88888999988888888888888777644 344444443 34444455555555543
No 30
>PHA02876 ankyrin repeat protein; Provisional
Probab=99.93 E-value=1.2e-24 Score=236.28 Aligned_cols=180 Identities=25% Similarity=0.215 Sum_probs=165.0
Q ss_pred CCCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.|..|+||||+|+..| +.++++.|+..|++++.+|..|.||||+|+..+++.+++++|++.|++++.+ |..|.||||
T Consensus 303 ~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~--d~~G~TpLh 380 (682)
T PHA02876 303 KNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNAR--DYCDKTPIH 380 (682)
T ss_pred cCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccC--CCCCCCHHH
Confidence 4678999999999999 6999999999999999999999999999999757899999999999999998 999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHhCCCcccccccccCCCCHHHHHhhhc-CCHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF-TNVVRAIENHICIFSGWLRELYGPGFLELLAPQL-LSRK 159 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~-~~~~ 159 (487)
+|+..|+.+++++|+++|++++..+..|.||||+|+..++ ..++++|+++|++++ .+|..|.|||| +|+.. ...+
T Consensus 381 ~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin--~~d~~G~TpLh-~Aa~~~~~~~ 457 (682)
T PHA02876 381 YAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVN--SKNKDLSTPLH-YACKKNCKLD 457 (682)
T ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCC--cCCCCCChHHH-HHHHhCCcHH
Confidence 9999999999999999999999999999999999998666 578999999999999 99999999999 66554 4789
Q ss_pred HHHHhhcCCCCCCCCCCccchhcccccc
Q 040660 160 VWVAVLPTGSRNPTKPFKLELAIYPSLL 187 (487)
Q Consensus 160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~ 187 (487)
++++|++.|++.+..+..+.+.++.+..
T Consensus 458 iv~lLl~~Gad~n~~d~~g~tpl~~a~~ 485 (682)
T PHA02876 458 VIEMLLDNGADVNAINIQNQYPLLIALE 485 (682)
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence 9999999999999888777777766554
No 31
>PHA02798 ankyrin-like protein; Provisional
Probab=99.92 E-value=9.7e-25 Score=227.82 Aligned_cols=165 Identities=18% Similarity=0.166 Sum_probs=149.7
Q ss_pred CCCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc---HHHHHHHHHcCCCccccCCCCCC
Q 040660 3 LQQSKEELLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL---YDVAKTLIELGAKVDAYRPGRHG 76 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~---~~~v~~Ll~~ga~~~~~~~d~~g 76 (487)
.|.+|+||||+|+..| +.+++++|+++|++++.+|..|.||||+|+.. ++ .+++++|+++|++++..+ +..|
T Consensus 105 ~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~-~~~~~~~vv~~Ll~~gadin~~~-~~~~ 182 (489)
T PHA02798 105 KNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQS-NHHIDIEIIKLLLEKGVDINTHN-NKEK 182 (489)
T ss_pred CCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCcchHHHHHHHHHhCCCccccc-CcCC
Confidence 4678999999999886 78999999999999999999999999999999 77 999999999999999873 4679
Q ss_pred CcHHHHHHHhC----CHHHHHHHHHcCCC---------------------------------------cccccCCCCCHH
Q 040660 77 GTPLHHAAKRG----LERTVKLLLSYGAN---------------------------------------ALVLNDDCQTPL 113 (487)
Q Consensus 77 ~TpLh~Aa~~g----~~~~v~~Ll~~ga~---------------------------------------~~~~d~~g~TpL 113 (487)
.||||.++..+ +.+++++|+++|++ +|.+|..|+|||
T Consensus 183 ~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL 262 (489)
T PHA02798 183 YDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPL 262 (489)
T ss_pred CcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHH
Confidence 99999987653 78899998887764 455677899999
Q ss_pred HHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660 114 EVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 114 ~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~ 172 (487)
|+|+.+|+.+++++|+++|++++ .+|..|.|||| .|...++.++++.|++.+++.+
T Consensus 263 ~~A~~~~~~~~v~~LL~~GAdin--~~d~~G~TpL~-~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 263 YYSVSHNNRKIFEYLLQLGGDIN--IITELGNTCLF-TAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred HHHHHcCcHHHHHHHHHcCCccc--ccCCCCCcHHH-HHHHcCcHHHHHHHHccCCCHH
Confidence 99999999999999999999999 99999999999 8999999999999999998874
No 32
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.92 E-value=7.3e-25 Score=222.74 Aligned_cols=125 Identities=26% Similarity=0.236 Sum_probs=112.2
Q ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh-CCC-cccccccccCCCCHHH
Q 040660 72 PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN-HIC-IFSGWLRELYGPGFLE 149 (487)
Q Consensus 72 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga-~~~~~~~d~~G~t~L~ 149 (487)
.|.+|.||||+|++.|+.+.|..|+..|++++.+++++.||||.|+.+|+++.|+-|++ .+- ..+ ..|..|+||||
T Consensus 269 ~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rlln--e~D~~g~tpLH 346 (929)
T KOG0510|consen 269 EDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLN--ESDLHGMTPLH 346 (929)
T ss_pred ccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccc--cccccCCCchh
Confidence 48999999999999999999999999999999999999999999999999999999999 443 344 88999999999
Q ss_pred HHhhhcCCHHHHHHhhcCCCCCC---CCCCccchhccccccccchHHHHHHHh
Q 040660 150 LLAPQLLSRKVWVAVLPTGSRNP---TKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 150 ~~a~~~~~~~~~~~Ll~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
+|+..++.+++++|+..|+... +.+..+.++++.+...+.+..+..|..
T Consensus 347 -laa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~ 398 (929)
T KOG0510|consen 347 -LAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLIS 398 (929)
T ss_pred -hhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHH
Confidence 8889999999999999999876 457788888888888888888877763
No 33
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.92 E-value=5.1e-24 Score=234.64 Aligned_cols=163 Identities=15% Similarity=0.148 Sum_probs=153.7
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
.++.++||.||..|+.++++.|++.|+++|..|..|.||||+|+.. |+.+++++|+++|+++|.+ |.+|.||||+|+
T Consensus 523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~gadin~~--d~~G~TpL~~A~ 599 (823)
T PLN03192 523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASK-GYEDCVLVLLKHACNVHIR--DANGNTALWNAI 599 (823)
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCCc--CCCCCCHHHHHH
Confidence 3567999999999999999999999999999999999999999999 9999999999999999998 999999999999
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV 164 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L 164 (487)
..|+.+++++|++.++..+ ...|.++||+|+.+|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|
T Consensus 600 ~~g~~~iv~~L~~~~~~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin--~~d~~G~TpLh-~A~~~g~~~iv~~L 674 (823)
T PLN03192 600 SAKHHKIFRILYHFASISD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVD--SEDHQGATALQ-VAMAEDHVDMVRLL 674 (823)
T ss_pred HhCCHHHHHHHHhcCcccC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHCCcHHHHHHH
Confidence 9999999999999887654 3467799999999999999999999999999 99999999999 89999999999999
Q ss_pred hcCCCCCCCCC
Q 040660 165 LPTGSRNPTKP 175 (487)
Q Consensus 165 l~~g~~~~~~~ 175 (487)
+.+|++.+..+
T Consensus 675 l~~GAdv~~~~ 685 (823)
T PLN03192 675 IMNGADVDKAN 685 (823)
T ss_pred HHcCCCCCCCC
Confidence 99999987666
No 34
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.91 E-value=9.4e-24 Score=220.68 Aligned_cols=191 Identities=16% Similarity=0.150 Sum_probs=156.8
Q ss_pred CchHHHHHHHH------cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCc-cccCCCCCC
Q 040660 6 SKEELLYQQVN------YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP--GLYDVAKTLIELGAKV-DAYRPGRHG 76 (487)
Q Consensus 6 ~g~t~L~~Aa~------~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~-~~~~~d~~g 76 (487)
.+.||||.|+. .|+.++|++||++|+++|.+|..|.||||+|+... ++.+++++|+++|+++ +.+ |..|
T Consensus 68 ~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~--d~~g 145 (494)
T PHA02989 68 YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVK--NSRG 145 (494)
T ss_pred CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCccccc--CCCC
Confidence 56889998875 47888999999999999999999999998876542 5688999999999998 676 8889
Q ss_pred CcHHHHHHHh--CCHHHHHHHHHcCCCccc-ccCCCCCHHHHHHHcC----CHHHHHHHHhCCCcccc------------
Q 040660 77 GTPLHHAAKR--GLERTVKLLLSYGANALV-LNDDCQTPLEVARAKG----FTNVVRAIENHICIFSG------------ 137 (487)
Q Consensus 77 ~TpLh~Aa~~--g~~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~~~g----~~~~v~~Ll~~ga~~~~------------ 137 (487)
+||||+|+.. ++.++|++|+++|++++. .+..|.||||+|+..+ +.++|++|+++|++++.
T Consensus 146 ~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~ 225 (494)
T PHA02989 146 YNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESF 225 (494)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHH
Confidence 9999988764 578899999999999888 6788999999887654 78899999988887651
Q ss_pred ------------------------cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHH
Q 040660 138 ------------------------WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRM 193 (487)
Q Consensus 138 ------------------------~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (487)
..+|..|.|||| +|+..++.+++++|++.|++.+.++..+..++..+...+....
T Consensus 226 ~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~-~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~i 304 (494)
T PHA02989 226 LDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLL-ISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDM 304 (494)
T ss_pred HHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHH-HHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence 134567999999 8888899999999999999999888888888888887777777
Q ss_pred HHHHHh
Q 040660 194 VIALWK 199 (487)
Q Consensus 194 ~~~l~~ 199 (487)
+..+..
T Consensus 305 v~~LL~ 310 (494)
T PHA02989 305 LNRILQ 310 (494)
T ss_pred HHHHHh
Confidence 665554
No 35
>PHA02989 ankyrin repeat protein; Provisional
Probab=99.91 E-value=1.7e-23 Score=218.76 Aligned_cols=170 Identities=20% Similarity=0.192 Sum_probs=144.4
Q ss_pred CCchHHHHHHHHc--CCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC-----CcHHHHHHHHHcCCCccccCCCCCCC
Q 040660 5 QSKEELLYQQVNY--GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP-----GLYDVAKTLIELGAKVDAYRPGRHGG 77 (487)
Q Consensus 5 ~~g~t~L~~Aa~~--g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~-----g~~~~v~~Ll~~ga~~~~~~~d~~g~ 77 (487)
.+|.|+||+++.. ++.++|++||++|+++|.++ .|.||||+|+... ++.+++++|+++|+++|.+ |..|.
T Consensus 33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~--d~~g~ 109 (494)
T PHA02989 33 YRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLK--TFNGV 109 (494)
T ss_pred cCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCC--CCCCC
Confidence 3588888765544 47899999999999999886 5799999998751 3578999999999999998 89999
Q ss_pred cHHHHHHHh---CCHHHHHHHHHcCCCc-ccccCCCCCHHHHHHHc--CCHHHHHHHHhCCCcccccc-cccCCCCHHHH
Q 040660 78 TPLHHAAKR---GLERTVKLLLSYGANA-LVLNDDCQTPLEVARAK--GFTNVVRAIENHICIFSGWL-RELYGPGFLEL 150 (487)
Q Consensus 78 TpLh~Aa~~---g~~~~v~~Ll~~ga~~-~~~d~~g~TpL~~A~~~--g~~~~v~~Ll~~ga~~~~~~-~d~~G~t~L~~ 150 (487)
||||.|+.. |+.+++++|+++|+|+ +.+|..|+||||+|+.. ++.++|++|+++|++++ . .+..|.||||
T Consensus 110 tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~--~~~~~~g~tpL~- 186 (494)
T PHA02989 110 SPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLF--EKTSLYGLTPMN- 186 (494)
T ss_pred cHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc--ccccccCCChHH-
Confidence 999988765 6789999999999999 89999999999998764 68999999999999998 6 6789999999
Q ss_pred Hhhh----cCCHHHHHHhhcCCCCCCCCCCccch
Q 040660 151 LAPQ----LLSRKVWVAVLPTGSRNPTKPFKLEL 180 (487)
Q Consensus 151 ~a~~----~~~~~~~~~Ll~~g~~~~~~~~~~~~ 180 (487)
.+.. .++.+++++|++.|++.+..+.....
T Consensus 187 ~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t 220 (494)
T PHA02989 187 IYLRNDIDVISIKVIKYLIKKGVNIETNNNGSES 220 (494)
T ss_pred HHHhcccccccHHHHHHHHhCCCCccccCCcccc
Confidence 5543 35899999999999998877743333
No 36
>PHA02917 ankyrin-like protein; Provisional
Probab=99.91 E-value=1.8e-23 Score=222.52 Aligned_cols=189 Identities=16% Similarity=0.100 Sum_probs=148.1
Q ss_pred CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHH----HHHHHHHcCCCccccCCCCC
Q 040660 3 LQQSKEELLYQQVNY---GNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD----VAKTLIELGAKVDAYRPGRH 75 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~----~v~~Ll~~ga~~~~~~~d~~ 75 (487)
.|++|+||||+|++. |+.++|++||+.|++++.+|..|.||||+|+.. |+.+ ++++|++.+...+.. +
T Consensus 28 ~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~-g~~~v~~~~~~~Ll~~~~~~n~~--~-- 102 (661)
T PHA02917 28 RNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNS-RHVKVNKDIAMALLEATGYSNIN--D-- 102 (661)
T ss_pred cCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHc-CChhHHHHHHHHHHhccCCCCCC--C--
Confidence 378899999998665 889999999999999999999999999999998 8744 557788775545543 3
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHH--HcCCHHHHHHHHhCCCcccccccc---cCC------
Q 040660 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR--AKGFTNVVRAIENHICIFSGWLRE---LYG------ 144 (487)
Q Consensus 76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~--~~g~~~~v~~Ll~~ga~~~~~~~d---~~G------ 144 (487)
..+++|+|+..|+.++|++|+++|+|++.+|.+|+||||+|+ ..|+.++|++|+++|++++ .+| ..|
T Consensus 103 ~~~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn--~~d~~~~~g~~~~~~ 180 (661)
T PHA02917 103 FNIFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL--YEDEDDEYGYAYDDY 180 (661)
T ss_pred cchHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc--ccccccccccccccc
Confidence 236778888888999999999999999999999999998543 5788999999999999887 443 233
Q ss_pred -----CCHHHHHhh----------hcCCHHHHHHhhcCCCCCCCCCCccchhccccccccch--HHHHHHH
Q 040660 145 -----PGFLELLAP----------QLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARP--RMVIALW 198 (487)
Q Consensus 145 -----~t~L~~~a~----------~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~ 198 (487)
.||||+++. ..++.+++++|+++|++++.++..+...++.+...+.. ..+..|.
T Consensus 181 ~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li 251 (661)
T PHA02917 181 QPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLM 251 (661)
T ss_pred cccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHH
Confidence 599994332 14578899999999999888887777777777765543 4555443
No 37
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.91 E-value=1.4e-23 Score=186.46 Aligned_cols=138 Identities=18% Similarity=0.191 Sum_probs=119.2
Q ss_pred CCCCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHH---HHHHHHHcCCCccccCCC-C
Q 040660 3 LQQSKEELLYQQVNYGNV----EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYD---VAKTLIELGAKVDAYRPG-R 74 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~---~v~~Ll~~ga~~~~~~~d-~ 74 (487)
++.++.+.||+|++.|+. +++++|++.|++++.+|..|+||||+|+.. |+.+ ++++|+++|++++.+ | .
T Consensus 16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~-g~~~~~~~i~~Ll~~Gadin~~--d~~ 92 (166)
T PHA02743 16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWY-DRANAVMKIELLVNMGADINAR--ELG 92 (166)
T ss_pred hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHh-CccCHHHHHHHHHHcCCCCCCC--CCC
Confidence 566778899999999998 566677788888998999999999999998 7654 478999999999987 6 5
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCC
Q 040660 75 HGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGP 145 (487)
Q Consensus 75 ~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~ 145 (487)
.|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+++|++++ ..+..|.
T Consensus 93 ~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~--~~~~~~~ 162 (166)
T PHA02743 93 TGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD--DPLSIGL 162 (166)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcccCCc
Confidence 89999999999999999999995 799999999999999999999999999999999999988 6665553
No 38
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.90 E-value=8.5e-24 Score=184.13 Aligned_cols=164 Identities=23% Similarity=0.225 Sum_probs=90.6
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
|.+|+++++.++-.|+.+.+..+|.+|+..|..+..+.+|+++++.. .+++++..|.+. .+|.- |+.|.|||+||
T Consensus 93 ~p~g~~~~~v~ap~~s~~k~sttltN~~rgnevs~~p~s~~slsVhq-l~L~~~~~~~~n--~VN~~--De~GfTpLiWA 167 (296)
T KOG0502|consen 93 DPEGWSALLVAAPCGSVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQ-LHLDVVDLLVNN--KVNAC--DEFGFTPLIWA 167 (296)
T ss_pred CchhhhhhhhcCCCCCcceeeeeecccccCCccccccCChhhHHHHH-HHHHHHHHHhhc--cccCc--cccCchHhHHH
Confidence 44455666666655655555555555555555555555555555555 454444444433 23333 55555555555
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA 163 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~ 163 (487)
+..|++++|++||+.|+|+++..+...++|++|.+.|..++|++|+.++.++| ..|-+|.|||- +|.+.++.++++.
T Consensus 168 aa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN--vyDwNGgTpLl-yAvrgnhvkcve~ 244 (296)
T KOG0502|consen 168 AAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN--VYDWNGGTPLL-YAVRGNHVKCVES 244 (296)
T ss_pred HhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc--eeccCCCceee-eeecCChHHHHHH
Confidence 55555555555555555555555555555555555555555555555555555 55555555555 5555555555555
Q ss_pred hhcCCCCCCCCC
Q 040660 164 VLPTGSRNPTKP 175 (487)
Q Consensus 164 Ll~~g~~~~~~~ 175 (487)
|+..|++.+..+
T Consensus 245 Ll~sGAd~t~e~ 256 (296)
T KOG0502|consen 245 LLNSGADVTQED 256 (296)
T ss_pred HHhcCCCccccc
Confidence 555555554433
No 39
>PHA02741 hypothetical protein; Provisional
Probab=99.89 E-value=5.6e-23 Score=183.45 Aligned_cols=128 Identities=23% Similarity=0.291 Sum_probs=89.7
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCChHHHHHHhCCCc----HHHHHHHHHcCCCccccCCC
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCR------DGAGLEWIDKEGKTPLIAACMNPGL----YDVAKTLIELGAKVDAYRPG 73 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~------~g~~~~~~d~~G~TpL~~A~~~~g~----~~~v~~Ll~~ga~~~~~~~d 73 (487)
|+.|+|+||+|++.|+.++|+.|+. .|++++.+|..|.||||+|+.. |+ .+++++|+.+|++++.+ +
T Consensus 18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~-g~~~~~~~ii~~Ll~~gadin~~--~ 94 (169)
T PHA02741 18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEK-HEAQLAAEIIDHLIELGADINAQ--E 94 (169)
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHc-CChHHHHHHHHHHHHcCCCCCCC--C
Confidence 4567777777777777777776643 2466777777777777777777 66 46677777777777765 5
Q ss_pred C-CCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 74 R-HGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 74 ~-~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
. .|+||||+|+..++.+++++|+. .|++++.+|.+|+||||+|+..++.+++++|+++++.
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 67777777777777777777776 4677777777777777777777777777777766544
No 40
>PHA02730 ankyrin-like protein; Provisional
Probab=99.89 E-value=2.2e-22 Score=209.21 Aligned_cols=193 Identities=15% Similarity=0.061 Sum_probs=159.7
Q ss_pred CCCchHHHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCCCc--cccCCCCCC
Q 040660 4 QQSKEELLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGAKV--DAYRPGRHG 76 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga~~--~~~~~d~~g 76 (487)
|++|+||||+|+..| +.++|++||++|++++.+|..|+||||+|+.. + +.|++++|++.|++. +.. |..+
T Consensus 38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~-~~~~~eIv~~Ll~~~~~~~~~~~--~~~~ 114 (672)
T PHA02730 38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKR-KYVKSQIVHLLISSYSNASNELT--SNIN 114 (672)
T ss_pred CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHc-CCCcHHHHHHHHhcCCCCCcccc--cccC
Confidence 578999999999997 59999999999999999999999999999997 5 799999999997654 655 7779
Q ss_pred CcHHHHHHH--hCCHHHHHHHHH-cCCCcccccC-----CCCCHHHHHHHcCCHHHHHHHHhCCCccccc-----ccccC
Q 040660 77 GTPLHHAAK--RGLERTVKLLLS-YGANALVLND-----DCQTPLEVARAKGFTNVVRAIENHICIFSGW-----LRELY 143 (487)
Q Consensus 77 ~TpLh~Aa~--~g~~~~v~~Ll~-~ga~~~~~d~-----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~-----~~d~~ 143 (487)
.+|||.++. .++.++|++|+. .++|++...+ .|.+|+++|+..++.++|++|+++|+++++. ..+..
T Consensus 115 d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~~~~~~ 194 (672)
T PHA02730 115 DFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSCMYDSD 194 (672)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccccccCC
Confidence 999999998 899999999997 6688876643 7899999999999999999999999999643 23433
Q ss_pred CC-CHHHHH--h---hhcCCHHHHHHhhcCCCCCCCCCCccchhccc--cccccchHHHHHHHh
Q 040660 144 GP-GFLELL--A---PQLLSRKVWVAVLPTGSRNPTKPFKLELAIYP--SLLDARPRMVIALWK 199 (487)
Q Consensus 144 G~-t~L~~~--a---~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~ 199 (487)
+- |.||+. . ...+..|++++|+++|++++.++..+..+++. ........++..|..
T Consensus 195 ~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~ 258 (672)
T PHA02730 195 RCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIK 258 (672)
T ss_pred ccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHh
Confidence 43 455511 1 46678999999999999999999999988864 222333666666655
No 41
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.89 E-value=3.4e-22 Score=191.35 Aligned_cols=154 Identities=23% Similarity=0.227 Sum_probs=133.4
Q ss_pred CCCch-HHHHHHHHcCCHHHHHHHHHcCCCCCccC----CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 4 QQSKE-ELLYQQVNYGNVEGIKALCRDGAGLEWID----KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 4 d~~g~-t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d----~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
|+.|. ++||.|+..|+.+++++|+++|++++.++ ..|.||||+|+.. ++.+++++|+++|+++|.++ +..|.|
T Consensus 29 d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~-~~~eivklLL~~GADVN~~~-~~~g~T 106 (300)
T PHA02884 29 NKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDC-DNDDAAKLLIRYGADVNRYA-EEAKIT 106 (300)
T ss_pred CcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcCccc-CCCCCC
Confidence 44444 67777788899999999999999999874 5899999999999 99999999999999999862 457999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCH
Q 040660 79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSR 158 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~ 158 (487)
|||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++.++... ..+..+.+|++ +. .+.
T Consensus 107 pLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~-~~---~n~ 175 (300)
T PHA02884 107 PLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN-------EISNFYKHPKK-IL---INF 175 (300)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC-------cccccccChhh-hh---ccH
Confidence 99999999999999999999999999999999999999999999988777532 23456778888 33 368
Q ss_pred HHHHHhhcCCCC
Q 040660 159 KVWVAVLPTGSR 170 (487)
Q Consensus 159 ~~~~~Ll~~g~~ 170 (487)
+++++|++++.-
T Consensus 176 ei~~~Lish~vl 187 (300)
T PHA02884 176 DILKILVSHFIL 187 (300)
T ss_pred HHHHHHHHHHHH
Confidence 999999988873
No 42
>PHA02795 ankyrin-like protein; Provisional
Probab=99.88 E-value=4.8e-22 Score=197.67 Aligned_cols=169 Identities=10% Similarity=-0.092 Sum_probs=154.1
Q ss_pred HHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHh--CCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 13 QQVNYGNVEGIKALCRDGAGLE------WIDKEGKTPLIAACM--NPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 13 ~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~G~TpL~~A~~--~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
+|+..+..|++++|+.+|++++ .++..++|+||+++. . |+.++|++|+.+||+++.. ++.||||+|+
T Consensus 83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~-n~~eiV~~LI~~GADIn~~----~~~t~lh~A~ 157 (437)
T PHA02795 83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAY-VEIDIVDFMVDHGAVIYKI----ECLNAYFRGI 157 (437)
T ss_pred HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcC-CCHHHHHHHHHCCCCCCCC----CCCCHHHHHH
Confidence 8999999999999999999998 788899999999999 7 9999999999999999974 4589999999
Q ss_pred HhCCHHHHHHHHHcCCCcc-cc-----cCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCH
Q 040660 85 KRGLERTVKLLLSYGANAL-VL-----NDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSR 158 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~-~~-----d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~ 158 (487)
..|+.+++++|+++|++.. .. +..+.|++|.|...++.+++++|+++|++++ .+|..|.|||| +|+..++.
T Consensus 158 ~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN--~kD~~G~TpLh-~Aa~~g~~ 234 (437)
T PHA02795 158 CKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN--QLDAGGRTLLY-RAIYAGYI 234 (437)
T ss_pred HcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--cCCCCCCCHHH-HHHHcCCH
Confidence 9999999999999998543 22 2358899999999999999999999999999 99999999999 89999999
Q ss_pred HHHHHhhcCCCCCCCCCCccchhcccccccc
Q 040660 159 KVWVAVLPTGSRNPTKPFKLELAIYPSLLDA 189 (487)
Q Consensus 159 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+++++|+++|++.+.++..+..+++.+...+
T Consensus 235 eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g 265 (437)
T PHA02795 235 DLVSWLLENGANVNAVMSNGYTCLDVAVDRG 265 (437)
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence 9999999999999999988888888777644
No 43
>PHA02743 Viral ankyrin protein; Provisional
Probab=99.88 E-value=2.7e-22 Score=178.23 Aligned_cols=142 Identities=16% Similarity=0.168 Sum_probs=128.9
Q ss_pred cCCCCCccCCCCChHHHHHHhCCCcH----HHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHH---HHHHHHcCCC
Q 040660 29 DGAGLEWIDKEGKTPLIAACMNPGLY----DVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERT---VKLLLSYGAN 101 (487)
Q Consensus 29 ~g~~~~~~d~~G~TpL~~A~~~~g~~----~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~---v~~Ll~~ga~ 101 (487)
+|++++..+.++.++||+||.. |+. +++++|++.|++++.+ |..|+||||+|+..|+.+. +++|++.|++
T Consensus 9 ~~~~~~~~~~~~~~~l~~a~~~-g~~~~l~~~~~~l~~~g~~~~~~--d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad 85 (166)
T PHA02743 9 NNLGAVEIDEDEQNTFLRICRT-GNIYELMEVAPFISGDGHLLHRY--DHHGRQCTHMVAWYDRANAVMKIELLVNMGAD 85 (166)
T ss_pred cchHHhhhccCCCcHHHHHHHc-CCHHHHHHHHHHHhhcchhhhcc--CCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC
Confidence 4677888889999999999999 887 6677888999999987 8999999999999998654 8999999999
Q ss_pred ccccc-CCCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCC
Q 040660 102 ALVLN-DDCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPF 176 (487)
Q Consensus 102 ~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~ 176 (487)
++.+| ..|+||||+|+..|+.+++++|+. .|++++ .+|..|.|||| +|...++.+++++|+.+|++.+..+.
T Consensus 86 in~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~tpL~-~A~~~~~~~iv~~Ll~~ga~~~~~~~ 159 (166)
T PHA02743 86 INARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLG--AINYQHETAYH-IAYKMRDRRMMEILRANGAVCDDPLS 159 (166)
T ss_pred CCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCcc--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCccc
Confidence 99998 589999999999999999999995 899999 89999999999 89999999999999999999877663
No 44
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=99.88 E-value=3.4e-22 Score=220.26 Aligned_cols=142 Identities=21% Similarity=0.146 Sum_probs=134.2
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|++|+||||+|+..|+.+++++|+++|+++|.+|.+|.||||+|+.. |+.+++++|++.++..+ ...|.++||+
T Consensus 554 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~-g~~~iv~~L~~~~~~~~----~~~~~~~L~~ 628 (823)
T PLN03192 554 GDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISA-KHHKIFRILYHFASISD----PHAAGDLLCT 628 (823)
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHh-CCHHHHHHHHhcCcccC----cccCchHHHH
Confidence 478899999999999999999999999999999999999999999999 99999999999887665 4568899999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCC-CCHHHHHh
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYG-PGFLELLA 152 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G-~t~L~~~a 152 (487)
|+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|+++|++++ ..|..| .||++ ++
T Consensus 629 Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~--~~~~~g~~t~~~-l~ 696 (823)
T PLN03192 629 AAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVD--KANTDDDFSPTE-LR 696 (823)
T ss_pred HHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CCCCCCCCCHHH-HH
Confidence 999999999999999999999999999999999999999999999999999999 888888 89998 44
No 45
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.88 E-value=1.3e-22 Score=218.61 Aligned_cols=161 Identities=29% Similarity=0.260 Sum_probs=122.7
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
+.|.|+||+|+..|+.+++..|++.++..+.....|.|+||.|... +...+++.++++|++++.+ +..|+||||+|+
T Consensus 472 ~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~-~~v~~~~~l~~~ga~v~~~--~~r~~TpLh~A~ 548 (1143)
T KOG4177|consen 472 KQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADE-DTVKVAKILLEHGANVDLR--TGRGYTPLHVAV 548 (1143)
T ss_pred cccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhh-hhHHHHHHHhhcCCceehh--cccccchHHHHH
Confidence 3455555665555665555555555555555555555666666555 5666666666667777776 788888888888
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV 164 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L 164 (487)
.+|+.++|++||++|+|++++++.|+||||.|+..|+.+|+++|+++|+++| ..|.+|.|||+ .|...++.++++.|
T Consensus 549 ~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vn--a~d~~g~TpL~-iA~~lg~~~~~k~l 625 (1143)
T KOG4177|consen 549 HYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVN--AADLDGFTPLH-IAVRLGYLSVVKLL 625 (1143)
T ss_pred hcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCC--cccccCcchhH-HHHHhcccchhhHH
Confidence 8888888888888888888888888888888888888888888888888888 88888888888 88888888888888
Q ss_pred hcCCCCC
Q 040660 165 LPTGSRN 171 (487)
Q Consensus 165 l~~g~~~ 171 (487)
+..+...
T Consensus 626 ~~~~~~~ 632 (1143)
T KOG4177|consen 626 KVVTATP 632 (1143)
T ss_pred HhccCcc
Confidence 8888773
No 46
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=99.88 E-value=6.8e-23 Score=178.50 Aligned_cols=156 Identities=24% Similarity=0.227 Sum_probs=142.8
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
--+++++++++...+++.+..|.+. .+|..|..|+|||+||+.+ |++++|++||+.|+++++. .+...++|++|+
T Consensus 127 ~~p~s~~slsVhql~L~~~~~~~~n--~VN~~De~GfTpLiWAaa~-G~i~vV~fLL~~GAdp~~l--gk~resALsLAt 201 (296)
T KOG0502|consen 127 LMPWSPLSLSVHQLHLDVVDLLVNN--KVNACDEFGFTPLIWAAAK-GHIPVVQFLLNSGADPDAL--GKYRESALSLAT 201 (296)
T ss_pred cccCChhhHHHHHHHHHHHHHHhhc--cccCccccCchHhHHHHhc-CchHHHHHHHHcCCChhhh--hhhhhhhHhHHh
Confidence 3467999999999998888777654 6888999999999999999 9999999999999999998 899999999999
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV 164 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L 164 (487)
..|..++|++||.++.|+|..|-+|-|||-||++-+|.+||+.|++.|++++ ..+..|++++. .|...++. +++.+
T Consensus 202 ~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t--~e~dsGy~~md-lAValGyr-~Vqqv 277 (296)
T KOG0502|consen 202 RGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT--QEDDSGYWIMD-LAVALGYR-IVQQV 277 (296)
T ss_pred cCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc--cccccCCcHHH-HHHHhhhH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999 99999999999 88888877 66666
Q ss_pred hcCCC
Q 040660 165 LPTGS 169 (487)
Q Consensus 165 l~~g~ 169 (487)
++.-+
T Consensus 278 ie~h~ 282 (296)
T KOG0502|consen 278 IEKHA 282 (296)
T ss_pred HHHHH
Confidence 64433
No 47
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.87 E-value=2.9e-22 Score=176.24 Aligned_cols=129 Identities=22% Similarity=0.196 Sum_probs=104.7
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCC--C-----CCccCCCCChHHHHHHhCCCcH---HHHHHHHHcCCCccccCC
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGA--G-----LEWIDKEGKTPLIAACMNPGLY---DVAKTLIELGAKVDAYRP 72 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~--~-----~~~~d~~G~TpL~~A~~~~g~~---~~v~~Ll~~ga~~~~~~~ 72 (487)
.|.+|.||||+|++.|+. +.+++..+. + ++.+|..|.||||+|+.. |+. +++++|++.|++++.+
T Consensus 13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~-~~~~~~e~v~~Ll~~gadin~~-- 87 (154)
T PHA02736 13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNP-DKADPQEKLKLLMEWGADINGK-- 87 (154)
T ss_pred cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeeccc-CchhHHHHHHHHHHcCCCcccc--
Confidence 467899999999999984 233322221 1 335688899999999988 776 4688899999999987
Q ss_pred C-CCCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660 73 G-RHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 73 d-~~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 136 (487)
| ..|.||||+|+..|+.+++++|+. .|++++.+|..|+||||+|+..|+.+++++|+++|++.+
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 6 489999999999999999999997 489999999999999999999999999999999988754
No 48
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=99.87 E-value=3.2e-22 Score=215.64 Aligned_cols=180 Identities=24% Similarity=0.221 Sum_probs=153.7
Q ss_pred CCCchHHHHHHHHcC-CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYG-NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g-~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
++.|.|+||+|+..| ..++...+++.|+++|..-..|.||||+|+.. |+.++++.|++.++..+.. .+.|.|+||.
T Consensus 437 ~~lG~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~-Gh~~~~~llle~~~~~~~~--~~~~l~~lhl 513 (1143)
T KOG4177|consen 437 AKLGYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQE-GHTEVVQLLLEGGANDNLD--AKKGLTPLHL 513 (1143)
T ss_pred hhcCCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhcc-CCchHHHHhhhcCCccCcc--chhccchhhh
Confidence 456778888888877 77777777777888887777888888888888 8888888888877666665 6678888888
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|...+...+++.++++|++++.++..|+||||.|+.+|+.++|++|+++|++++ .+++.|+|||| .|+..++.+|+.
T Consensus 514 a~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~--ak~~~G~TPLH-~Aa~~G~~~i~~ 590 (1143)
T KOG4177|consen 514 AADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN--AKDKLGYTPLH-QAAQQGHNDIAE 590 (1143)
T ss_pred hhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc--ccCCCCCChhh-HHHHcChHHHHH
Confidence 888888888888888899999999999999999999999999999999999999 99999999999 888899999999
Q ss_pred HhhcCCCCCCCCCCccchhcccccccc
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDA 189 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+|+++|++++..+..+...+..+...+
T Consensus 591 LLlk~GA~vna~d~~g~TpL~iA~~lg 617 (1143)
T KOG4177|consen 591 LLLKHGASVNAADLDGFTPLHIAVRLG 617 (1143)
T ss_pred HHHHcCCCCCcccccCcchhHHHHHhc
Confidence 999999999999987777776666533
No 49
>PHA02917 ankyrin-like protein; Provisional
Probab=99.87 E-value=1.4e-21 Score=207.99 Aligned_cols=161 Identities=16% Similarity=0.025 Sum_probs=135.1
Q ss_pred CCCCchHHHHHHHHcCCHH----HHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 3 LQQSKEELLYQQVNYGNVE----GIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
.+.+|.||||+|+..|+.+ +++.|++.+...+..+. .+++|+|+.. ++.++|++|+++|+++|.+ |.+|+|
T Consensus 64 ~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~-~~~e~vk~Ll~~Gadin~~--d~~g~T 138 (661)
T PHA02917 64 KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKN-VDVDLIKVLVEHGFDLSVK--CENHRS 138 (661)
T ss_pred cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhc-CCHHHHHHHHHcCCCCCcc--CCCCcc
Confidence 3678999999999999854 56788887554555442 3777888888 9999999999999999998 999999
Q ss_pred HHHHHH--HhCCHHHHHHHHHcCCCcccccC---CC-----------CCHHHHHHH-----------cCCHHHHHHHHhC
Q 040660 79 PLHHAA--KRGLERTVKLLLSYGANALVLND---DC-----------QTPLEVARA-----------KGFTNVVRAIENH 131 (487)
Q Consensus 79 pLh~Aa--~~g~~~~v~~Ll~~ga~~~~~d~---~g-----------~TpL~~A~~-----------~g~~~~v~~Ll~~ 131 (487)
|||+|+ ..|+.++|++|+++|++++.+|. .| .||||+|+. .++.++|++|+++
T Consensus 139 ~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~ 218 (661)
T PHA02917 139 VIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINH 218 (661)
T ss_pred HHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHC
Confidence 999654 57899999999999999987654 34 599999986 5689999999999
Q ss_pred CCcccccccccCCCCHHHHHhhhcCCH--HHHHHhhcCCCCCC
Q 040660 132 ICIFSGWLRELYGPGFLELLAPQLLSR--KVWVAVLPTGSRNP 172 (487)
Q Consensus 132 ga~~~~~~~d~~G~t~L~~~a~~~~~~--~~~~~Ll~~g~~~~ 172 (487)
|++++ .+|.+|.|||| +|...++. +++++|+. |++..
T Consensus 219 Gadvn--~~d~~G~TpLh-~A~~~g~~~~eivk~Li~-g~d~~ 257 (661)
T PHA02917 219 GIKPS--SIDKNYCTALQ-YYIKSSHIDIDIVKLLMK-GIDNT 257 (661)
T ss_pred CCCcc--cCCCCCCcHHH-HHHHcCCCcHHHHHHHHh-CCccc
Confidence 99999 99999999999 77777764 79999975 77553
No 50
>PHA02741 hypothetical protein; Provisional
Probab=99.87 E-value=1.4e-21 Score=174.41 Aligned_cols=133 Identities=15% Similarity=0.109 Sum_probs=120.9
Q ss_pred CCccCCCCChHHHHHHhCCCcHHHHHHHHH------cCCCccccCCCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCc
Q 040660 33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIE------LGAKVDAYRPGRHGGTPLHHAAKRGL----ERTVKLLLSYGANA 102 (487)
Q Consensus 33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~------~ga~~~~~~~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~ga~~ 102 (487)
++.+|..|.|+||+|+.. |+.+++++|+. .|++++.+ |..|.||||+|+..|+ .+++++|++.|+++
T Consensus 14 ~~~~~~~g~t~Lh~Aa~~-g~~~~v~~l~~~~~~~~~ga~in~~--d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi 90 (169)
T PHA02741 14 IAEKNSEGENFFHEAARC-GCFDIIARFTPFIRGDCHAAALNAT--DDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI 90 (169)
T ss_pred hhccccCCCCHHHHHHHc-CCHHHHHHHHHHhccchhhhhhhcc--CCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC
Confidence 345788999999999999 99999999864 36888887 8999999999999999 58999999999999
Q ss_pred ccccC-CCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660 103 LVLND-DCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 103 ~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~ 171 (487)
+.+|. +|+||||+|+..++.+++++|+. .|++++ ..|..|.|||| .|...++.+++++|+..++..
T Consensus 91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~--~~n~~g~tpL~-~A~~~~~~~iv~~L~~~~~~~ 158 (169)
T PHA02741 91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLH--FCNADNKSPFE-LAIDNEDVAMMQILREIVATS 158 (169)
T ss_pred CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--cCCCCCCCHHH-HHHHCCCHHHHHHHHHHHHHh
Confidence 99985 99999999999999999999997 599998 99999999999 899999999999999876553
No 51
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.86 E-value=4.1e-21 Score=161.49 Aligned_cols=143 Identities=23% Similarity=0.260 Sum_probs=126.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
...+.+|+..+....|+.||+..++ +|.+|.+|+||||-|+.+ |+.+||+.|+..|++++.+ ...|+||||-||+.
T Consensus 64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn-~h~div~~ll~~gAn~~a~--T~~GWTPLhSAckW 140 (228)
T KOG0512|consen 64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYN-GHLDIVHELLLSGANKEAK--TNEGWTPLHSACKW 140 (228)
T ss_pred HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhc-CchHHHHHHHHccCCcccc--cccCccchhhhhcc
Confidence 3567899999999999999999776 899999999999999999 9999999999999999998 99999999999999
Q ss_pred CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH-HHHHHHH-hCCCcccccccccCCCCHHHHHhhhcC
Q 040660 87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT-NVVRAIE-NHICIFSGWLRELYGPGFLELLAPQLL 156 (487)
Q Consensus 87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll-~~ga~~~~~~~d~~G~t~L~~~a~~~~ 156 (487)
++.+++.+||.+|+|||+..+..+||||+|+...+. ..+++|+ ..+.... .++..+.||++ +|.+.+
T Consensus 141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg--~~nn~eeta~~-iARRT~ 209 (228)
T KOG0512|consen 141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPG--LKNNLEETAFD-IARRTS 209 (228)
T ss_pred cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChh--hhcCccchHHH-HHHHhh
Confidence 999999999999999999999999999999987665 4555554 4445554 78889999999 776554
No 52
>PHA02730 ankyrin-like protein; Provisional
Probab=99.86 E-value=9.4e-21 Score=197.11 Aligned_cols=156 Identities=13% Similarity=0.133 Sum_probs=135.7
Q ss_pred HHHHHHHcC---CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc----HHHHHHHHHcCC--CccccCCCCCCCcHH
Q 040660 10 LLYQQVNYG---NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL----YDVAKTLIELGA--KVDAYRPGRHGGTPL 80 (487)
Q Consensus 10 ~L~~Aa~~g---~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~----~~~v~~Ll~~ga--~~~~~~~d~~g~TpL 80 (487)
.||.-...+ +.+++++||++|+++|.. ..|.||||+|+.. ++ .+++++||++|+ +++.+ |..|.|||
T Consensus 346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~-nnn~i~~eIvelLIs~Ga~~dIN~k--d~~G~T~L 421 (672)
T PHA02730 346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVN-NNNIVDVNVVRFIVENNGHMAINHV--SNNGRLCM 421 (672)
T ss_pred HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHH-cCCcchHHHHHHHHHcCCCcccccc--ccCCCchH
Confidence 666667756 589999999999999985 7999999999988 54 899999999998 58877 88999999
Q ss_pred HH---HHHhC---------CHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccccc-CCCCH
Q 040660 81 HH---AAKRG---------LERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLREL-YGPGF 147 (487)
Q Consensus 81 h~---Aa~~g---------~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~ 147 (487)
|. |...+ ..+++++|+.+|+|++.+|..|+||||+|+..++.+++++|+++|++++ .+|. .|.||
T Consensus 422 h~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN--~~d~~~g~Ta 499 (672)
T PHA02730 422 YGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVN--TTSRSIINTA 499 (672)
T ss_pred hHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCC--CCCCcCCcCH
Confidence 94 33232 2357999999999999999999999999999999999999999999999 8886 59999
Q ss_pred HHHHhhh--cCCHHHHHHhhcCCCCCC
Q 040660 148 LELLAPQ--LLSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 148 L~~~a~~--~~~~~~~~~Ll~~g~~~~ 172 (487)
|| .|+. .++.+++++|+++|++..
T Consensus 500 L~-~Aa~~~~~~~eIv~~LLs~ga~i~ 525 (672)
T PHA02730 500 IQ-KSSYRRENKTKLVDLLLSYHPTLE 525 (672)
T ss_pred HH-HHHHhhcCcHHHHHHHHHcCCCHH
Confidence 99 5554 478999999999999864
No 53
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=99.84 E-value=3.8e-21 Score=179.37 Aligned_cols=174 Identities=20% Similarity=0.216 Sum_probs=147.8
Q ss_pred CCHHHHHHHHHc----CC-----CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC-CCccccCCCCCCCcHHHHHHHh-
Q 040660 18 GNVEGIKALCRD----GA-----GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGRHGGTPLHHAAKR- 86 (487)
Q Consensus 18 g~~~~v~~Ll~~----g~-----~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpLh~Aa~~- 86 (487)
-+.+.|+..|.. ++ -+|+-|.+|+|+|||++.+ +++++|+.||..| +++|.. ++-|+||+|+|+..
T Consensus 237 a~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSH-aNF~VV~~LLDSgvC~VD~q--NrAGYtpiMLaALA~ 313 (452)
T KOG0514|consen 237 SDPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSH-ANFDVVSILLDSGVCDVDQQ--NRAGYTPVMLAALAK 313 (452)
T ss_pred CCHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecc-cchHHHHHHhccCccccccc--ccccccHHHHHHHHh
Confidence 456777655432 22 2788999999999999999 9999999999998 899998 99999999999864
Q ss_pred ----CCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 87 ----GLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 87 ----g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
.+.++|..|...| |||++- ..|+|+||+|+.+|+.++|+.||..|+++| .+|.+|.|+|+ .|+..+++||+
T Consensus 314 lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN--iQDdDGSTALM-CA~EHGhkEiv 389 (452)
T KOG0514|consen 314 LKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN--IQDDDGSTALM-CAAEHGHKEIV 389 (452)
T ss_pred hcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc--cccCCccHHHh-hhhhhChHHHH
Confidence 3567899988776 777765 579999999999999999999999999999 99999999999 99999999999
Q ss_pred HHhhcC-CCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 162 VAVLPT-GSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 162 ~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
++|+.. +.+....+..+..++..++..+....-..|+
T Consensus 390 klLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlY 427 (452)
T KOG0514|consen 390 KLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLY 427 (452)
T ss_pred HHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHH
Confidence 998865 6677778888888888888866666555444
No 54
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=3.4e-21 Score=188.74 Aligned_cols=171 Identities=26% Similarity=0.311 Sum_probs=130.1
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCH
Q 040660 10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE 89 (487)
Q Consensus 10 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~ 89 (487)
.+..|+..|+++-|+.||..|++++..+.+|.|+||-+|.. .+.+||++|+++|++||.. |..|+||||.|+..|+.
T Consensus 43 ~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id-~~~e~v~~l~e~ga~Vn~~--d~e~wtPlhaaascg~~ 119 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACID-DNLEMVKFLVENGANVNAQ--DNEGWTPLHAAASCGYL 119 (527)
T ss_pred HHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhc-ccHHHHHHHHHhcCCcccc--ccccCCcchhhcccccH
Confidence 35566677777777777777777777777777777777777 7777777777777777776 77777777777777777
Q ss_pred HHHHHHHHcCCC-----------------------------------------------------------cccccCCCC
Q 040660 90 RTVKLLLSYGAN-----------------------------------------------------------ALVLNDDCQ 110 (487)
Q Consensus 90 ~~v~~Ll~~ga~-----------------------------------------------------------~~~~d~~g~ 110 (487)
.++++|+.+|++ .++.+..|.
T Consensus 120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~ 199 (527)
T KOG0505|consen 120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA 199 (527)
T ss_pred HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence 777777776443 223344467
Q ss_pred CHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660 111 TPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL 186 (487)
Q Consensus 111 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 186 (487)
|.||.|+.+|..++.++|+++|.+++ .+|.+|+|||| +|+..+..+..++|+.+|++.+.....++..+-...
T Consensus 200 T~lHvAaa~Gy~e~~~lLl~ag~~~~--~~D~dgWtPlH-AAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d 272 (527)
T KOG0505|consen 200 TALHVAAANGYTEVAALLLQAGYSVN--IKDYDGWTPLH-AAAHWGQEDACELLVEHGADMDAKTKMGETPLDVAD 272 (527)
T ss_pred hHHHHHHhhhHHHHHHHHHHhccCcc--cccccCCCccc-HHHHhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence 88888888888888888888888888 88888888888 888888888888888888888777655555544433
No 55
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.84 E-value=6.3e-21 Score=192.96 Aligned_cols=169 Identities=26% Similarity=0.200 Sum_probs=155.3
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
|.+|.|+||.|+.+|+.+++++|+++.+-++..|..|.+|||+|++. |+.+++++|+.++..+|+. ...|.||||.|
T Consensus 46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~-g~~e~vkmll~q~d~~na~--~~e~~tplhla 122 (854)
T KOG0507|consen 46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWN-GNLEIVKMLLLQTDILNAV--NIENETPLHLA 122 (854)
T ss_pred CccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhc-CcchHHHHHHhcccCCCcc--cccCcCccchh
Confidence 66899999999999999999999999999999999999999999999 9999999999999999998 89999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc------ccccccCCCCHHHHHhhhcCC
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS------GWLRELYGPGFLELLAPQLLS 157 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~------~~~~d~~G~t~L~~~a~~~~~ 157 (487)
++.||.++|.+|+.+|+|+..+|+.+.|+|.+|++.|..++|++|+.....+. ...++..+.++|| +|+.+++
T Consensus 123 aqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plH-laakngh 201 (854)
T KOG0507|consen 123 AQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLH-LAAKNGH 201 (854)
T ss_pred hhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcc-hhhhcch
Confidence 99999999999999999999999999999999999999999999997722111 1255677899999 9999999
Q ss_pred HHHHHHhhcCCCCCCCCCC
Q 040660 158 RKVWVAVLPTGSRNPTKPF 176 (487)
Q Consensus 158 ~~~~~~Ll~~g~~~~~~~~ 176 (487)
.++++.|+..|.+++....
T Consensus 202 ~~~~~~ll~ag~din~~t~ 220 (854)
T KOG0507|consen 202 VECMQALLEAGFDINYTTE 220 (854)
T ss_pred HHHHHHHHhcCCCcccccc
Confidence 9999999999999987764
No 56
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=9.9e-21 Score=185.52 Aligned_cols=145 Identities=29% Similarity=0.317 Sum_probs=136.7
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR----------- 71 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~----------- 71 (487)
...+|.|+||.++...+.++|++|+++|++||..|..|+||||.|+.- |+..++++||.+|+++...+
T Consensus 69 ~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc-g~~~i~~~li~~gA~~~avNsdg~~P~dl~e 147 (527)
T KOG0505|consen 69 CNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC-GYLNIVEYLIQHGANLLAVNSDGNMPYDLAE 147 (527)
T ss_pred cCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc-ccHHHHHHHHHhhhhhhhccCCCCCcccccc
Confidence 356899999999999999999999999999999999999999999999 99999999999998866552
Q ss_pred ----------------------------------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccc
Q 040660 72 ----------------------------------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVL 105 (487)
Q Consensus 72 ----------------------------------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~ 105 (487)
++..|.|.||.|+..|..++.++|+++|.+++++
T Consensus 148 ~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~ 227 (527)
T KOG0505|consen 148 DEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIK 227 (527)
T ss_pred CcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccc
Confidence 3555999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHH
Q 040660 106 NDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLEL 150 (487)
Q Consensus 106 d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~ 150 (487)
|.+||||||.|+.+|+.+++++|+++|++++ .....|.|||.+
T Consensus 228 D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d--~~t~~g~~p~dv 270 (527)
T KOG0505|consen 228 DYDGWTPLHAAAHWGQEDACELLVEHGADMD--AKTKMGETPLDV 270 (527)
T ss_pred cccCCCcccHHHHhhhHhHHHHHHHhhcccc--hhhhcCCCCccc
Confidence 9999999999999999999999999999999 999999999994
No 57
>PHA02736 Viral ankyrin protein; Provisional
Probab=99.84 E-value=8.9e-21 Score=166.71 Aligned_cols=132 Identities=22% Similarity=0.154 Sum_probs=112.9
Q ss_pred CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC--C-----ccccCCCCCCCcHHHHHHHhCCH---HHHHHHHHcCCCc
Q 040660 33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA--K-----VDAYRPGRHGGTPLHHAAKRGLE---RTVKLLLSYGANA 102 (487)
Q Consensus 33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga--~-----~~~~~~d~~g~TpLh~Aa~~g~~---~~v~~Ll~~ga~~ 102 (487)
.+.+|..|.||||+|+.. |+ ++.+|+..+. + ++.+ |..|.||||+|+..|+. +++++|++.|+++
T Consensus 10 ~~~~d~~g~tpLh~A~~~-g~--~~~l~~~~~~~~~~~~~~~~~~--d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi 84 (154)
T PHA02736 10 ASEPDIEGENILHYLCRN-GG--VTDLLAFKNAISDENRYLVLEY--NRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI 84 (154)
T ss_pred HHhcCCCCCCHHHHHHHh-CC--HHHHHHHHHHhcchhHHHHHHh--cCCCCEEEEeecccCchhHHHHHHHHHHcCCCc
Confidence 456788999999999999 87 3444443332 2 2233 88999999999999987 4689999999999
Q ss_pred cccc-CCCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660 103 LVLN-DDCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 103 ~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~ 172 (487)
+.+| ..|+||||+|+..|+.+++++|+. .|++++ .+|..|.|||| +|...++.+++++|+..|++.+
T Consensus 85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n--~~~~~g~tpL~-~A~~~~~~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME--ILNYAFKTPYY-VACERHDAKMMNILRAKGAQCK 153 (154)
T ss_pred cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc--cccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence 9998 599999999999999999999998 499998 99999999999 8889999999999999998753
No 58
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.83 E-value=4.9e-21 Score=173.31 Aligned_cols=155 Identities=25% Similarity=0.285 Sum_probs=134.5
Q ss_pred HHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHH
Q 040660 15 VNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVK 93 (487)
Q Consensus 15 a~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~ 93 (487)
|+.|+.--|++-|+. ..|+|.-|..|++||||||+. |+..+++.||..|+.+|.. +.-..||||+|+..||.++|+
T Consensus 8 cregna~qvrlwld~tehdln~gddhgfsplhwaake-gh~aivemll~rgarvn~t--nmgddtplhlaaahghrdivq 84 (448)
T KOG0195|consen 8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKE-GHVAIVEMLLSRGARVNST--NMGDDTPLHLAAAHGHRDIVQ 84 (448)
T ss_pred hhcCCeEEEEEEecCcccccccccccCcchhhhhhhc-ccHHHHHHHHhcccccccc--cCCCCcchhhhhhcccHHHHH
Confidence 677777667766654 778999999999999999999 9999999999999999997 777889999999999999999
Q ss_pred HHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCC
Q 040660 94 LLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPT 173 (487)
Q Consensus 94 ~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~ 173 (487)
.||+..+|+|+.|..|+||||||+..|...+.+-|+..|+.++ ..+++|.|||. -|.-.-...+.++.-.+|...+.
T Consensus 85 kll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~--icnk~g~tpld-kakp~l~~~l~e~aek~gq~~nr 161 (448)
T KOG0195|consen 85 KLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN--ICNKKGMTPLD-KAKPMLKNTLLEIAEKHGQSPNR 161 (448)
T ss_pred HHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee--ecccCCCCchh-hhchHHHHHHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999999999999999 99999999999 55443344445555566776654
Q ss_pred CC
Q 040660 174 KP 175 (487)
Q Consensus 174 ~~ 175 (487)
.+
T Consensus 162 ip 163 (448)
T KOG0195|consen 162 IP 163 (448)
T ss_pred cc
Confidence 44
No 59
>PHA02792 ankyrin-like protein; Provisional
Probab=99.83 E-value=1.4e-19 Score=186.53 Aligned_cols=179 Identities=12% Similarity=0.064 Sum_probs=149.8
Q ss_pred CCCchHHHHHHHHcC-------CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCC--cHHHHHHHHHcCC---------
Q 040660 4 QQSKEELLYQQVNYG-------NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPG--LYDVAKTLIELGA--------- 65 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g-------~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g--~~~~v~~Ll~~ga--------- 65 (487)
|+.|.||||+|+..+ +.++++.||++|++++.+|..|.||||+|+.+ . ..|++++|+..--
T Consensus 172 ~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~-~~i~~ei~~~L~~~~~~~~~~~~~l 250 (631)
T PHA02792 172 DRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDK-CDIKREIFDALFDSNYSGNELMNIL 250 (631)
T ss_pred CCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHc-ccchHHHHHHHHhccccccchHhHH
Confidence 566999999999999 89999999999999999999999999999998 6 5677777764210
Q ss_pred -------------Ccccc--C-----------------------------------------------------------
Q 040660 66 -------------KVDAY--R----------------------------------------------------------- 71 (487)
Q Consensus 66 -------------~~~~~--~----------------------------------------------------------- 71 (487)
++|.. +
T Consensus 251 ~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~ 330 (631)
T PHA02792 251 SNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDE 330 (631)
T ss_pred HHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHC
Confidence 01100 0
Q ss_pred -C---CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCC--CCHHHHHHHcCCH---HHHHHHHhCCCccccccccc
Q 040660 72 -P---GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDC--QTPLEVARAKGFT---NVVRAIENHICIFSGWLREL 142 (487)
Q Consensus 72 -~---d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g--~TpL~~A~~~g~~---~~v~~Ll~~ga~~~~~~~d~ 142 (487)
. ...+...+|.||..|+.++|++|+++|||++.+|.+| .||||+|...... +++++|+++|++++ .+|.
T Consensus 331 Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN--~kD~ 408 (631)
T PHA02792 331 GATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDIN--KIDK 408 (631)
T ss_pred CCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccc--cccc
Confidence 0 1235677999999999999999999999999999875 6999998776654 46899999999999 9999
Q ss_pred CCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660 143 YGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL 186 (487)
Q Consensus 143 ~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 186 (487)
.|.|||| .|+..++.+++++|+++|++.+.++..+..++..+.
T Consensus 409 ~G~TPLh-~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~ 451 (631)
T PHA02792 409 HGRSILY-YCIESHSVSLVEWLIDNGADINITTKYGSTCIGICV 451 (631)
T ss_pred cCcchHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 9999999 888999999999999999999988877777666554
No 60
>PHA02884 ankyrin repeat protein; Provisional
Probab=99.82 E-value=1.2e-19 Score=173.81 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=114.5
Q ss_pred CCccCCCCChHH-HHHHhCCCcHHHHHHHHHcCCCccccCC--CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccc-cCC
Q 040660 33 LEWIDKEGKTPL-IAACMNPGLYDVAKTLIELGAKVDAYRP--GRHGGTPLHHAAKRGLERTVKLLLSYGANALVL-NDD 108 (487)
Q Consensus 33 ~~~~d~~G~TpL-~~A~~~~g~~~~v~~Ll~~ga~~~~~~~--d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~-d~~ 108 (487)
+..+|..|+|++ |.|+.. |+.+++++|+++|++++.++. +..|.||||+|+..|+.+++++|+++|+|++.+ +..
T Consensus 25 ~~~~d~~~~~~lL~~A~~~-~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~ 103 (300)
T PHA02884 25 IKKKNKICIANILYSSIKF-HYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEA 103 (300)
T ss_pred hhccCcCCCCHHHHHHHHc-CCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCC
Confidence 445788888655 555555 999999999999999998632 468999999999999999999999999999986 468
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 109 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
|.||||+|+..++.+++++|+++|++++ .+|..|.|||| .|...++.+++.++...+
T Consensus 104 g~TpLh~Aa~~~~~eivklLL~~GAdin--~kd~~G~TpL~-~A~~~~~~~~~~~~~~~~ 160 (300)
T PHA02884 104 KITPLYISVLHGCLKCLEILLSYGADIN--IQTNDMVTPIE-LALMICNNFLAFMICDNE 160 (300)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHhCChhHHHHhcCCc
Confidence 9999999999999999999999999999 99999999999 787778878776665433
No 61
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.81 E-value=1.6e-19 Score=197.90 Aligned_cols=141 Identities=23% Similarity=0.276 Sum_probs=79.8
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHH-HHHhCCCcHHHHHHHHHcCC-----------------
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRD--GAGLEWIDKEGKTPLI-AACMNPGLYDVAKTLIELGA----------------- 65 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~G~TpL~-~A~~~~g~~~~v~~Ll~~ga----------------- 65 (487)
.++..|+.|++.|+.+.|+.+++. +.++|..|..|+|||| .|+.. ++.+++++|+++|+
T Consensus 16 ~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~-~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~~ 94 (743)
T TIGR00870 16 DEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIEN-ENLELTELLLNLSCRGAVGDTLLHAISLEYV 94 (743)
T ss_pred HHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhc-ChHHHHHHHHhCCCCCCcChHHHHHHHhccH
Confidence 345666666666666666666666 5666666666666666 44444 66666666666654
Q ss_pred ---------------C------cccc--CCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc--------------CC
Q 040660 66 ---------------K------VDAY--RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN--------------DD 108 (487)
Q Consensus 66 ---------------~------~~~~--~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d--------------~~ 108 (487)
+ ++.. .....|.||||+|+..|+.++|++|+++|++++.++ ..
T Consensus 95 ~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~ 174 (743)
T TIGR00870 95 DAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYH 174 (743)
T ss_pred HHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccc
Confidence 0 0000 001235566666666666666666666555555432 13
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHH
Q 040660 109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLE 149 (487)
Q Consensus 109 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~ 149 (487)
|.||||+|+..|+.+++++|+++|++++ .+|..|+||||
T Consensus 175 g~tpL~~Aa~~~~~~iv~lLl~~gadin--~~d~~g~T~Lh 213 (743)
T TIGR00870 175 GESPLNAAACLGSPSIVALLSEDPADIL--TADSLGNTLLH 213 (743)
T ss_pred cccHHHHHHHhCCHHHHHHHhcCCcchh--hHhhhhhHHHH
Confidence 5556666666666666666666665555 55555566665
No 62
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=99.80 E-value=1.1e-19 Score=184.03 Aligned_cols=174 Identities=21% Similarity=0.108 Sum_probs=156.5
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
|..|.+|||+|++.|+.++|+.||.++..+|..+-+|.||||.|+++ ||.+++.+||.+|+|.-++ +..+.|+|-+|
T Consensus 79 d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqh-gh~dvv~~Ll~~~adp~i~--nns~~t~ldlA 155 (854)
T KOG0507|consen 79 DTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQH-GHLEVVFYLLKKNADPFIR--NNSKETVLDLA 155 (854)
T ss_pred hccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhh-cchHHHHHHHhcCCCcccc--CcccccHHHHH
Confidence 56789999999999999999999999988999999999999999999 9999999999999999998 99999999999
Q ss_pred HHhCCHHHHHHHHHcCCC--------cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660 84 AKRGLERTVKLLLSYGAN--------ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL 155 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~--------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~ 155 (487)
++.|..++|+.|+..... ...++-.+-+|||+|+++||.++++.|++.|.+++ ...+.| |+|| -|+..
T Consensus 156 ~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din--~~t~~g-talh-eaalc 231 (854)
T KOG0507|consen 156 SRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDIN--YTTEDG-TALH-EAALC 231 (854)
T ss_pred HHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcc--cccccc-hhhh-hHhhc
Confidence 999999999999987322 22345577899999999999999999999999999 777777 9999 89999
Q ss_pred CCHHHHHHhhcCCCCCCCCCCccchhccc
Q 040660 156 LSRKVWVAVLPTGSRNPTKPFKLELAIYP 184 (487)
Q Consensus 156 ~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~ 184 (487)
+..+++.+|+..|.+...++.+..+++..
T Consensus 232 gk~evvr~ll~~gin~h~~n~~~qtaldi 260 (854)
T KOG0507|consen 232 GKAEVVRFLLEIGINTHIKNQHGQTALDI 260 (854)
T ss_pred CcchhhhHHHhhccccccccccchHHHHH
Confidence 99999999999999988888666655443
No 63
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.79 E-value=1e-18 Score=191.57 Aligned_cols=145 Identities=15% Similarity=0.082 Sum_probs=121.6
Q ss_pred CCCChHHHHHHhCCCcHHHHHHHHHc--CCCccccCCCCCCCcHHH-HHHHhCCHHHHHHHHHcCCC-------------
Q 040660 38 KEGKTPLIAACMNPGLYDVAKTLIEL--GAKVDAYRPGRHGGTPLH-HAAKRGLERTVKLLLSYGAN------------- 101 (487)
Q Consensus 38 ~~G~TpL~~A~~~~g~~~~v~~Ll~~--ga~~~~~~~d~~g~TpLh-~Aa~~g~~~~v~~Ll~~ga~------------- 101 (487)
..+...|+.|+.. |+.+.++.+++. +.++|.. |..|.|||| .|+..++.+++++|++.|+.
T Consensus 15 ~~~~~~~l~A~~~-g~~~~v~~lL~~~~~~~in~~--d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~ 91 (743)
T TIGR00870 15 SDEEKAFLPAAER-GDLASVYRDLEEPKKLNINCP--DRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISL 91 (743)
T ss_pred CHHHHHHHHHHHc-CCHHHHHHHhccccccCCCCc--CccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHh
Confidence 4567999999999 999999999999 8888887 899999999 88888899999999988730
Q ss_pred ---------------cc--------------cccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-----------
Q 040660 102 ---------------AL--------------VLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE----------- 141 (487)
Q Consensus 102 ---------------~~--------------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d----------- 141 (487)
.. ..+..|.||||+|+.+|+.++|++|+++|++++ .++
T Consensus 92 ~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~--~~~~~~~~~~~~~~ 169 (743)
T TIGR00870 92 EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVP--ARACGDFFVKSQGV 169 (743)
T ss_pred ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCC--cCcCCchhhcCCCC
Confidence 00 012358999999999999999999999999988 432
Q ss_pred ---cCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccc
Q 040660 142 ---LYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLD 188 (487)
Q Consensus 142 ---~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~ 188 (487)
..|.|||| .|+..++.+++++|+++|++.+.++..+...++.+...
T Consensus 170 ~~~~~g~tpL~-~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~ 218 (743)
T TIGR00870 170 DSFYHGESPLN-AAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVME 218 (743)
T ss_pred CcccccccHHH-HHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence 36899999 88899999999999999999888887666666655543
No 64
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=99.79 E-value=2.6e-19 Score=162.17 Aligned_cols=130 Identities=27% Similarity=0.309 Sum_probs=118.1
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
|..|.+|||||++.|+..+|+.||..|+.+|..+....||||+|+.+ ||.++|+.||+..+|+|+. +..|.||||||
T Consensus 31 ddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaah-ghrdivqkll~~kadvnav--nehgntplhya 107 (448)
T KOG0195|consen 31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAH-GHRDIVQKLLSRKADVNAV--NEHGNTPLHYA 107 (448)
T ss_pred cccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhc-ccHHHHHHHHHHhcccchh--hccCCCchhhh
Confidence 56688999999999999999999999999999999999999999999 9999999999999999998 99999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 136 (487)
|-.|...+.+-|+.+|+.+++.|+.|.|||..|--.-..-+.++-.++|..++
T Consensus 108 cfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN 160 (448)
T ss_pred hhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999998754444445555556776665
No 65
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.78 E-value=1.4e-18 Score=137.66 Aligned_cols=89 Identities=38% Similarity=0.507 Sum_probs=61.9
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHH
Q 040660 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLER 90 (487)
Q Consensus 11 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~ 90 (487)
||+|++.|+.+++++|++.+.+++. |.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+
T Consensus 1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAEN-GNLEIVKLLLENGADINSQ--DKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHT-TTHHHHHHHHHTTTCTT-B--STTSSBHHHHHHHTTHHH
T ss_pred CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHc-CCHHHHHHHHHhccccccc--CCCCCCHHHHHHHcCCHH
Confidence 5777777777777777777666655 66777777777 7777777777777777766 677777777777777777
Q ss_pred HHHHHHHcCCCccccc
Q 040660 91 TVKLLLSYGANALVLN 106 (487)
Q Consensus 91 ~v~~Ll~~ga~~~~~d 106 (487)
++++|+++|++++.+|
T Consensus 74 ~~~~Ll~~g~~~~~~n 89 (89)
T PF12796_consen 74 IVKLLLEHGADVNIRN 89 (89)
T ss_dssp HHHHHHHTTT-TTSS-
T ss_pred HHHHHHHcCCCCCCcC
Confidence 7777777777776654
No 66
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=99.78 E-value=1.8e-18 Score=145.62 Aligned_cols=140 Identities=24% Similarity=0.077 Sum_probs=116.3
Q ss_pred hHHHHHHhCCCcHHHHHHHHHcCCC-ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC
Q 040660 42 TPLIAACMNPGLYDVAKTLIELGAK-VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120 (487)
Q Consensus 42 TpL~~A~~~~g~~~~v~~Ll~~ga~-~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g 120 (487)
--+.+|+.. +.+..|+.||+..++ +|.+ |.+|+||||-|+.+|+.+||+.|+..||+++++...||||||-|+...
T Consensus 65 rl~lwaae~-nrl~eV~~lL~e~an~vNtr--D~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWn 141 (228)
T KOG0512|consen 65 RLLLWAAEK-NRLTEVQRLLSEKANHVNTR--DEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWN 141 (228)
T ss_pred HHHHHHHhh-ccHHHHHHHHHhcccccccc--ccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhccc
Confidence 346789999 889999999988765 7777 999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcC-CCCCCCCCCccchhccccc
Q 040660 121 FTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPT-GSRNPTKPFKLELAIYPSL 186 (487)
Q Consensus 121 ~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~ 186 (487)
+.+++-+|+++|++++ .......||||+.|...+....+.+|+.. +.....+....++++..+-
T Consensus 142 N~~va~~LLqhgaDVn--A~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR 206 (228)
T KOG0512|consen 142 NFEVAGRLLQHGADVN--AQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR 206 (228)
T ss_pred chhHHHHHHhccCccc--ccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH
Confidence 9999999999999999 88888999999555555666667776643 4444444444555554443
No 67
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.76 E-value=3.4e-18 Score=175.56 Aligned_cols=160 Identities=23% Similarity=0.190 Sum_probs=141.8
Q ss_pred CCchHHHHHHHH---cCCHHHHHHHHHcCCC-CCc----cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----
Q 040660 5 QSKEELLYQQVN---YGNVEGIKALCRDGAG-LEW----IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR----- 71 (487)
Q Consensus 5 ~~g~t~L~~Aa~---~g~~~~v~~Ll~~g~~-~~~----~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~----- 71 (487)
..|+|.||.|.. .++.++++.||+.-.. +|. -...|.||||+|+.+ .+.++|++|++.|||++++.
T Consensus 141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~-~~~~~V~lLl~~gADV~aRa~G~FF 219 (782)
T KOG3676|consen 141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVN-RDAELVRLLLAAGADVHARACGAFF 219 (782)
T ss_pred chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHh-ccHHHHHHHHHcCCchhhHhhcccc
Confidence 469999999997 4667999999986332 111 235799999999999 99999999999999999883
Q ss_pred -C---------------CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc-
Q 040660 72 -P---------------GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI- 134 (487)
Q Consensus 72 -~---------------d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~- 134 (487)
+ -..|..||.+||..++.+++++|+++|||++++|.+|+|.||..+.+...++..+++++|++
T Consensus 220 ~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~ 299 (782)
T KOG3676|consen 220 CPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANA 299 (782)
T ss_pred CcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 1 13488999999999999999999999999999999999999999999999999999999999
Q ss_pred -ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 135 -FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 135 -~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
.. .+|+.|.|||. +|+..+..++.+.+++..
T Consensus 300 l~~--v~N~qgLTPLt-LAaklGk~emf~~ile~~ 331 (782)
T KOG3676|consen 300 LEH--VRNNQGLTPLT-LAAKLGKKEMFQHILERR 331 (782)
T ss_pred ccc--ccccCCCChHH-HHHHhhhHHHHHHHHHhh
Confidence 66 99999999999 999999999999999884
No 68
>PHA02792 ankyrin-like protein; Provisional
Probab=99.76 E-value=1.1e-17 Score=172.50 Aligned_cols=156 Identities=16% Similarity=0.113 Sum_probs=132.4
Q ss_pred HHHHHHHHcC--CHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCC--CCcHHHHHH
Q 040660 9 ELLYQQVNYG--NVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH--GGTPLHHAA 84 (487)
Q Consensus 9 t~L~~Aa~~g--~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~--g~TpLh~Aa 84 (487)
-.||.=.+.+ +.+++++|+++|++++ + ..+...++.|+.. |+.+++++|+++|++++.+ |.+ +.||||+|+
T Consensus 308 ~~l~~Yl~~~~v~ieiIK~LId~Ga~~~-r-~~~~n~~~~Aa~~-gn~eIVelLIs~GADIN~k--D~~g~~~TpLh~A~ 382 (631)
T PHA02792 308 DLLSEYVSYHTVYINVIKCMIDEGATLY-R-FKHINKYFQKFDN-RDPKVVEYILKNGNVVVED--DDNIINIMPLFPTL 382 (631)
T ss_pred HHHHHHHhcCCccHHHHHHHHHCCCccc-c-CCcchHHHHHHHc-CCHHHHHHHHHcCCchhhh--cCCCCChhHHHHHH
Confidence 3566666666 7899999999999975 2 2356779999999 9999999999999999988 555 569999987
Q ss_pred HhCCH---HHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh-------
Q 040660 85 KRGLE---RTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ------- 154 (487)
Q Consensus 85 ~~g~~---~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~------- 154 (487)
..... +++++|+++|+|++.+|..|+||||+|+..++.+++++|+++|++++ .+|..|.|||+ .|..
T Consensus 383 ~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN--~kD~~G~TpL~-~A~~~~~~~~~ 459 (631)
T PHA02792 383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADIN--ITTKYGSTCIG-ICVILAHACIP 459 (631)
T ss_pred HhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHHHhcccH
Confidence 76654 46899999999999999999999999999999999999999999999 99999999999 5543
Q ss_pred ---cCCHHHHHHhhcCCCCCC
Q 040660 155 ---LLSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 155 ---~~~~~~~~~Ll~~g~~~~ 172 (487)
....+++++|+++|.+..
T Consensus 460 ~i~~~~~~il~lLLs~~p~i~ 480 (631)
T PHA02792 460 EIAELYIKILEIILSKLPTIE 480 (631)
T ss_pred HHHHHHHHHHHHHHhcCCChh
Confidence 223567999999997764
No 69
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.76 E-value=1.7e-17 Score=139.41 Aligned_cols=124 Identities=36% Similarity=0.519 Sum_probs=103.8
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|.|+||+|+..|+.++++.|++++.+.+..+..|.||||+|+.. ++.+++++|++.|++++.. +..|.||+|+
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~--~~~~~~~l~~ 79 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKN-GHLEIVKLLLEKGADVNAR--DKDGNTPLHL 79 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCCHHHH
Confidence 456788888888888888888888888888778888888888888888 8888888888888877776 7788888888
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll 129 (487)
|+..++.+++++|+..+.+++..|..|.|||++|...++.+++++|+
T Consensus 80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 88888888888888888888888888888888888888888888774
No 70
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=99.76 E-value=5.9e-18 Score=134.14 Aligned_cols=89 Identities=34% Similarity=0.437 Sum_probs=81.4
Q ss_pred HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHH
Q 040660 44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123 (487)
Q Consensus 44 L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~ 123 (487)
||+|++. |+++++++|++.+.+++. |.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.+
T Consensus 1 L~~A~~~-~~~~~~~~ll~~~~~~~~------~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 1 LHIAAQN-GNLEILKFLLEKGADINL------GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHHHHHT-TTHHHHHHHHHTTSTTTS------SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred CHHHHHc-CCHHHHHHHHHCcCCCCC------CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence 7999999 999999999999877753 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccccccc
Q 040660 124 VVRAIENHICIFSGWLRE 141 (487)
Q Consensus 124 ~v~~Ll~~ga~~~~~~~d 141 (487)
++++|+++|++++ .+|
T Consensus 74 ~~~~Ll~~g~~~~--~~n 89 (89)
T PF12796_consen 74 IVKLLLEHGADVN--IRN 89 (89)
T ss_dssp HHHHHHHTTT-TT--SS-
T ss_pred HHHHHHHcCCCCC--CcC
Confidence 9999999999987 543
No 71
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=99.73 E-value=1.1e-16 Score=134.46 Aligned_cols=125 Identities=38% Similarity=0.449 Sum_probs=116.8
Q ss_pred ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHH
Q 040660 35 WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE 114 (487)
Q Consensus 35 ~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~ 114 (487)
.+|..|.||||+|+.. ++.+++++|++.+.+.+.. +..|.||||+|+..+..+++++|++.|++++..+..|.||+|
T Consensus 2 ~~~~~g~t~l~~a~~~-~~~~~i~~li~~~~~~~~~--~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~ 78 (126)
T cd00204 2 ARDEDGRTPLHLAASN-GHLEVVKLLLENGADVNAK--DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLH 78 (126)
T ss_pred CcCcCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 4567899999999999 9999999999999998776 899999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 115 VARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
+|+..++.+++++|++++.+++ ..+..|.|+++ .+...+..+++++|+
T Consensus 79 ~a~~~~~~~~~~~L~~~~~~~~--~~~~~~~~~l~-~~~~~~~~~~~~~Ll 126 (126)
T cd00204 79 LAARNGNLDVVKLLLKHGADVN--ARDKDGRTPLH-LAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHcCcHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHhcCCHHHHHHhC
Confidence 9999999999999999998888 88899999999 788888999988874
No 72
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.72 E-value=8.1e-18 Score=175.26 Aligned_cols=166 Identities=30% Similarity=0.320 Sum_probs=157.1
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+-+|+|-.|+..||.|+|++|+..|++++.+|..|++||.+|+.. ||..+|+.|+++.++++.+. |+.+.|+|-+||.
T Consensus 756 n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaata-gh~tvV~~llk~ha~veaQs-drtkdt~lSlacs 833 (2131)
T KOG4369|consen 756 NIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATA-GHITVVQDLLKAHADVEAQS-DRTKDTMLSLACS 833 (2131)
T ss_pred cccccccccccCccHHHHHHHHHhcccccccccccchhhhhhccc-CchHHHHHHHhhhhhhhhhc-ccccCceEEEecC
Confidence 457899999999999999999999999999999999999999999 99999999999999999884 9999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
.|..++|++||..|++-..++...+|||.+|..-|.+++|.+|+.+|..++.....+.|-.||+ +|..+++.+..+.|+
T Consensus 834 ggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLm-latmngh~~at~~ll 912 (2131)
T KOG4369|consen 834 GGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLM-LATMNGHQAATLSLL 912 (2131)
T ss_pred CCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhh-hhhhccccHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998885566688999999 999999999999999
Q ss_pred cCCCCCCCC
Q 040660 166 PTGSRNPTK 174 (487)
Q Consensus 166 ~~g~~~~~~ 174 (487)
+.|.+++..
T Consensus 913 ~~gsdiNaq 921 (2131)
T KOG4369|consen 913 QPGSDINAQ 921 (2131)
T ss_pred cccchhccc
Confidence 999997643
No 73
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.67 E-value=2e-16 Score=119.23 Aligned_cols=101 Identities=27% Similarity=0.277 Sum_probs=67.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH
Q 040660 43 PLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT 122 (487)
Q Consensus 43 pL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~ 122 (487)
-++|++.+ |.++-|+..+..|-++|- -..|++|||||+..|+.+++++|+..|++++.+|+.|-|||.-|+..||.
T Consensus 5 ~~~W~vkN-G~~DeVk~~v~~g~nVn~---~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~ 80 (117)
T KOG4214|consen 5 SVAWNVKN-GEIDEVKQSVNEGLNVNE---IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR 80 (117)
T ss_pred hHhhhhcc-CcHHHHHHHHHccccHHH---HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence 35566666 666666666666666664 34667777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhCCCcccccccccCCCCHHH
Q 040660 123 NVVRAIENHICIFSGWLRELYGPGFLE 149 (487)
Q Consensus 123 ~~v~~Ll~~ga~~~~~~~d~~G~t~L~ 149 (487)
++|++|+++|++-. .+-.+|.+.+.
T Consensus 81 ~cVklLL~~GAdrt--~~~PdG~~~~e 105 (117)
T KOG4214|consen 81 DCVKLLLQNGADRT--IHAPDGTALIE 105 (117)
T ss_pred HHHHHHHHcCcccc--eeCCCchhHHh
Confidence 77777777777655 55566665555
No 74
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.65 E-value=1.1e-15 Score=142.37 Aligned_cols=130 Identities=32% Similarity=0.348 Sum_probs=91.1
Q ss_pred CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC-----HHHHHHHHHcCC---Cccc
Q 040660 33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL-----ERTVKLLLSYGA---NALV 104 (487)
Q Consensus 33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~-----~~~v~~Ll~~ga---~~~~ 104 (487)
....+..+.+++|+++.. +..+++++|+..|++++.+ |..|.||||+|+..|+ .+++++|++.|+ +.+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~--~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~ 142 (235)
T COG0666 66 LAARDLDGRLPLHSAASK-GDDKIVKLLLASGADVNAK--DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL 142 (235)
T ss_pred cccCCccccCHHHHHHHc-CcHHHHHHHHHcCCCcccc--cCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence 334555667777777777 6667777777777777665 6777777777777777 777777777777 4445
Q ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 105 LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 105 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
+|..|+||||+|+..|+.+++++|++.|++++ .++..|.|+++ .+...+..+++..++..+
T Consensus 143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 143 RDEDGNTPLHWAALNGDADIVELLLEAGADPN--SRNSYGVTALD-PAAKNGRIELVKLLLDKG 203 (235)
T ss_pred cCCCCCchhHHHHHcCchHHHHHHHhcCCCCc--ccccCCCcchh-hhcccchHHHHHHHHhcC
Confidence 57777777777777777777777777777776 66777777777 677777777777777655
No 75
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=99.64 E-value=1.5e-15 Score=114.58 Aligned_cols=104 Identities=29% Similarity=0.395 Sum_probs=95.2
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g 87 (487)
+.-++|++++|.++-|+.....|.++|.. ..|++|||||+-. |+.+++++|+..|++++.+ |+.|-|||.-|+..|
T Consensus 3 d~~~~W~vkNG~~DeVk~~v~~g~nVn~~-~ggR~plhyAAD~-GQl~ilefli~iGA~i~~k--DKygITPLLsAvwEG 78 (117)
T KOG4214|consen 3 DMSVAWNVKNGEIDEVKQSVNEGLNVNEI-YGGRTPLHYAADY-GQLSILEFLISIGANIQDK--DKYGITPLLSAVWEG 78 (117)
T ss_pred chhHhhhhccCcHHHHHHHHHccccHHHH-hCCcccchHhhhc-chHHHHHHHHHhccccCCc--cccCCcHHHHHHHHh
Confidence 35678999999999999999999888755 3899999999999 9999999999999999987 999999999999999
Q ss_pred CHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660 88 LERTVKLLLSYGANALVLNDDCQTPLEV 115 (487)
Q Consensus 88 ~~~~v~~Ll~~ga~~~~~d~~g~TpL~~ 115 (487)
|.++|++||..|+|-..+..+|.+.+..
T Consensus 79 H~~cVklLL~~GAdrt~~~PdG~~~~ea 106 (117)
T KOG4214|consen 79 HRDCVKLLLQNGADRTIHAPDGTALIEA 106 (117)
T ss_pred hHHHHHHHHHcCcccceeCCCchhHHhh
Confidence 9999999999999988888889776654
No 76
>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]
Probab=99.64 E-value=2.6e-16 Score=164.24 Aligned_cols=169 Identities=20% Similarity=0.202 Sum_probs=135.3
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
|..|+|+|-+|+..|..++|++||..|++-..++-..+|||.+|... |.+++|++|+.+|+.+|.+-..+.|-.||++|
T Consensus 821 drtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sg-gy~~iI~~llS~GseInSrtgSklgisPLmla 899 (2131)
T KOG4369|consen 821 DRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSG-GYTKIIHALLSSGSEINSRTGSKLGISPLMLA 899 (2131)
T ss_pred ccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCc-chHHHHHHHhhcccccccccccccCcchhhhh
Confidence 56677777777777777777777777777777777777888777777 77788888888887777765566777888888
Q ss_pred HHhCCHHHHHHHHHcCCCcccc-cCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVL-NDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~-d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
...||.+.++.||+.|-|+|+. ..+-+|+|-+|+..|..++|.+||.+.+++. .+-+.|.|||+ -++..+..++-.
T Consensus 900 tmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anve--hRaktgltplm-e~AsgGyvdvg~ 976 (2131)
T KOG4369|consen 900 TMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVE--HRAKTGLTPLM-EMASGGYVDVGN 976 (2131)
T ss_pred hhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhh--hhcccCCcccc-hhhcCCccccch
Confidence 8888888888888888777763 3466788888888888888888888888887 88899999999 899999999999
Q ss_pred HhhcCCCCCCCCCC
Q 040660 163 AVLPTGSRNPTKPF 176 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~ 176 (487)
+|+..|++.+..+.
T Consensus 977 ~li~~gad~nasPv 990 (2131)
T KOG4369|consen 977 LLIAAGADTNASPV 990 (2131)
T ss_pred hhhhcccccccCCC
Confidence 99999999876553
No 77
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=99.63 E-value=1.2e-15 Score=157.09 Aligned_cols=127 Identities=24% Similarity=0.249 Sum_probs=118.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc---------C--------------CCCChHHHHHHhCCCcHHHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWI---------D--------------KEGKTPLIAACMNPGLYDVAKT 59 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~---------d--------------~~G~TpL~~A~~~~g~~~~v~~ 59 (487)
-...|.|+||+|+.+.+.++|++||+.|||++.+ | ..|..||.+||.. ++.|++++
T Consensus 180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~-nq~eivrl 258 (782)
T KOG3676|consen 180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACT-NQPEIVRL 258 (782)
T ss_pred HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHc-CCHHHHHH
Confidence 3567999999999999999999999999998763 1 2478999999999 99999999
Q ss_pred HHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--cccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660 60 LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN--ALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132 (487)
Q Consensus 60 Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 132 (487)
|+++|||++++ |.+|+|.||..+..-..++..++|++|++ ...+|+.|.|||.+|++.|+.++.+.+++..
T Consensus 259 Ll~~gAd~~aq--DS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~~ 331 (782)
T KOG3676|consen 259 LLAHGADPNAQ--DSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILERR 331 (782)
T ss_pred HHhcCCCCCcc--ccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHhh
Confidence 99999999998 99999999999999889999999999999 8899999999999999999999999999983
No 78
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.63 E-value=2.3e-15 Score=136.65 Aligned_cols=124 Identities=28% Similarity=0.328 Sum_probs=116.0
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
-..+|..++-+|+.+.+..||+---.+|.+|..|+++|..|+.+ |+.+++++||++|+|+|.. .+..++||||+||..
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAayk-Gnl~~v~lll~~gaDvN~~-qhg~~YTpLmFAALS 89 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYK-GNLTLVELLLELGADVNDK-QHGTLYTPLMFAALS 89 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhc-CcHHHHHHHHHhCCCcCcc-cccccccHHHHHHHc
Confidence 45889999999999999999998666999999999999999999 9999999999999999986 588899999999999
Q ss_pred CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660 87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132 (487)
Q Consensus 87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 132 (487)
|+.++.++|++.|+.+...|.-|+|+-.+|+.-||.++|..+-++-
T Consensus 90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~ 135 (396)
T KOG1710|consen 90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHI 135 (396)
T ss_pred CCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccc
Confidence 9999999999999999999999999999999999999999886553
No 79
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=99.59 E-value=2.4e-14 Score=133.26 Aligned_cols=126 Identities=33% Similarity=0.373 Sum_probs=119.1
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc-----HHHHHHHHHcCC---CccccCCCCC
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL-----YDVAKTLIELGA---KVDAYRPGRH 75 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~-----~~~v~~Ll~~ga---~~~~~~~d~~ 75 (487)
+..+.+++|+++..++.+++++|+..|++++.+|..|.||||+|+.. ++ .+++++||+.|+ ..+.+ |..
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~-~~~~~~~~~~~~~ll~~g~~~~~~~~~--~~~ 146 (235)
T COG0666 70 DLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALN-GNPPEGNIEVAKLLLEAGADLDVNNLR--DED 146 (235)
T ss_pred CccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhc-CCcccchHHHHHHHHHcCCCCCCcccc--CCC
Confidence 34578999999999999999999999999999999999999999999 98 999999999999 55554 999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132 (487)
Q Consensus 76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 132 (487)
|.||||+|+..|+.+++++|++.|++++.++..|.|+|++|+..++.++++.|++.+
T Consensus 147 g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 147 GNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999987
No 80
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.54 E-value=3e-14 Score=153.04 Aligned_cols=106 Identities=33% Similarity=0.435 Sum_probs=98.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660 9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL 88 (487)
Q Consensus 9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~ 88 (487)
..||.|+..|+.+.|+.|++.|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+..|+
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~-g~~eiv~~LL~~Gadvn~~--d~~G~TpLh~A~~~g~ 160 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACAN-GHVQVVRVLLEFGADPTLL--DKDGKTPLELAEENGF 160 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHCCc
Confidence 458899999999999999999999999999999999999999 9999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHc-------CCCcccccCCCCCHHHHHH
Q 040660 89 ERTVKLLLSY-------GANALVLNDDCQTPLEVAR 117 (487)
Q Consensus 89 ~~~v~~Ll~~-------ga~~~~~d~~g~TpL~~A~ 117 (487)
.+++++|+++ |++++..+..|.+++..+.
T Consensus 161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS 196 (664)
T ss_pred HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence 9999999998 8888888888888877554
No 81
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.54 E-value=2.9e-14 Score=153.18 Aligned_cols=103 Identities=30% Similarity=0.399 Sum_probs=96.2
Q ss_pred hHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC
Q 040660 42 TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF 121 (487)
Q Consensus 42 TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~ 121 (487)
+.||.|+.. |+.+++++|++.|+++|.+ |..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.+|+
T Consensus 84 ~~L~~aa~~-G~~~~vk~LL~~Gadin~~--d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~ 160 (664)
T PTZ00322 84 VELCQLAAS-GDAVGARILLTGGADPNCR--DYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF 160 (664)
T ss_pred HHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence 358899999 9999999999999999998 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC-------CCcccccccccCCCCHHH
Q 040660 122 TNVVRAIENH-------ICIFSGWLRELYGPGFLE 149 (487)
Q Consensus 122 ~~~v~~Ll~~-------ga~~~~~~~d~~G~t~L~ 149 (487)
.+++++|+++ |++.+ ..+..|.+++.
T Consensus 161 ~~iv~~Ll~~~~~~~~~ga~~~--~~~~~g~~~~~ 193 (664)
T PTZ00322 161 REVVQLLSRHSQCHFELGANAK--PDSFTGKPPSL 193 (664)
T ss_pred HHHHHHHHhCCCcccccCCCCC--ccccCCCCccc
Confidence 9999999999 78777 77777777766
No 82
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=8.3e-16 Score=102.21 Aligned_cols=53 Identities=40% Similarity=0.901 Sum_probs=49.5
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccceeEeee
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~y~ 486 (487)
.+|.||+|.+.+.|++.|||+++|++|..++++. ...||+||++|..+||.|.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY~ 61 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTYR 61 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhhc
Confidence 5899999999999999999999999999998874 6689999999999999985
No 83
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.52 E-value=4e-14 Score=138.20 Aligned_cols=115 Identities=19% Similarity=0.116 Sum_probs=72.0
Q ss_pred HHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHH
Q 040660 47 ACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVR 126 (487)
Q Consensus 47 A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~ 126 (487)
|+.. |.+|+|+..+..--|+..- +..|-|+||-|+..||.+||+|||+.|+++|+.|.+||||||+|+..+++.+++
T Consensus 557 aaLe-GEldlVq~~i~ev~DpSqp--NdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ck 633 (752)
T KOG0515|consen 557 AALE-GELDLVQRIIYEVTDPSQP--NDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCK 633 (752)
T ss_pred hhhc-chHHHHHHHHHhhcCCCCC--CccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHH
Confidence 5555 6667776666655555543 666777777777777777777777777777777777777777777777777777
Q ss_pred HHHhCCCcccccccccCCCCHHHHHh--hhcCCHHHHHHhhc
Q 040660 127 AIENHICIFSGWLRELYGPGFLELLA--PQLLSRKVWVAVLP 166 (487)
Q Consensus 127 ~Ll~~ga~~~~~~~d~~G~t~L~~~a--~~~~~~~~~~~Ll~ 166 (487)
.|++.|+-+.. ..=.++.|+.. -+ ...++..+.++|..
T Consensus 634 qLVe~GaavfA-sTlSDmeTa~e-KCee~eeGY~~CsqyL~~ 673 (752)
T KOG0515|consen 634 QLVESGAAVFA-STLSDMETAAE-KCEEMEEGYDQCSQYLYG 673 (752)
T ss_pred HHHhccceEEe-eecccccchhh-hcchhhhhHHHHHHHHHH
Confidence 77777765541 22244556665 23 23445556666653
No 84
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.49 E-value=2.9e-14 Score=101.86 Aligned_cols=55 Identities=47% Similarity=0.664 Sum_probs=24.2
Q ss_pred HHHcC-CCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHH
Q 040660 60 LIELG-AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116 (487)
Q Consensus 60 Ll~~g-a~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A 116 (487)
||++| ++++.+ |..|.||||+|+..|+.++|++|++.|+|++.+|.+|+||||+|
T Consensus 1 LL~~~~~~~n~~--d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQ--DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT-----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred CCccCcCCCcCc--CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence 45555 666665 66777777777777777777777777777777777777777765
No 85
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.4e-13 Score=134.47 Aligned_cols=118 Identities=28% Similarity=0.360 Sum_probs=106.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660 9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL 88 (487)
Q Consensus 9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~ 88 (487)
-.|.-|+..|.+++|+..+..=-|+...|..|.|+||-|+.. ||.+||+|||+.|+|+|.. |.+||||||.||..++
T Consensus 552 aLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCa-ghyeIVkFLi~~ganVNa~--DSdGWTPLHCAASCNn 628 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICA-GHYEIVKFLIEFGANVNAA--DSDGWTPLHCAASCNN 628 (752)
T ss_pred HHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhc-chhHHHHHHHhcCCcccCc--cCCCCchhhhhhhcCc
Confidence 456779999999999999998888999999999999999999 9999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHcCCCccccc-CCCCCHHHHHH--HcCCHHHHHHHH
Q 040660 89 ERTVKLLLSYGANALVLN-DDCQTPLEVAR--AKGFTNVVRAIE 129 (487)
Q Consensus 89 ~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~--~~g~~~~v~~Ll 129 (487)
+.+++.|++.|+-|.+.. .++.|+..-+- +.|..+|.+||.
T Consensus 629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~ 672 (752)
T KOG0515|consen 629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLY 672 (752)
T ss_pred hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHH
Confidence 999999999999887744 67889877654 467889999995
No 86
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.46 E-value=1.6e-13 Score=97.39 Aligned_cols=54 Identities=41% Similarity=0.569 Sum_probs=32.2
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHH
Q 040660 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIE 129 (487)
Q Consensus 76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll 129 (487)
|+|+||+|++.|+.+++++|++.|+|++.+|.+|+||||+|+.+|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 456666666666666666666666666666666666666666666666666664
No 87
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=99.43 E-value=1.2e-13 Score=98.72 Aligned_cols=55 Identities=40% Similarity=0.519 Sum_probs=33.4
Q ss_pred HHHcC-CCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 26 LCRDG-AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 26 Ll~~g-~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
||++| ++++.+|..|+||||+||.. |+.+++++|++.|++++.+ |..|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~-g~~~~v~~Ll~~g~d~~~~--d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARY-GHSEVVRLLLQNGADPNAK--DKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHH-T-HHHHHHHHHCT--TT-----TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHc-CcHHHHHHHHHCcCCCCCC--cCCCCCHHHhC
Confidence 67887 89999999999999999999 9999999999999999998 99999999997
No 88
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=99.43 E-value=8.4e-13 Score=120.20 Aligned_cols=122 Identities=24% Similarity=0.210 Sum_probs=111.2
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccc-ccCCCCCHHHHHHH
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALV-LNDDCQTPLEVARA 118 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~-~d~~g~TpL~~A~~ 118 (487)
-..+|.-++-+ |..+-...||.---++|.+ |..|+++|..|+..|+.++|++||+.|+|+|. ++..++||||+|+.
T Consensus 12 ~~~~Lle~i~K-ndt~~a~~LLs~vr~vn~~--D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL 88 (396)
T KOG1710|consen 12 PKSPLLEAIDK-NDTEAALALLSTVRQVNQR--DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL 88 (396)
T ss_pred hhhHHHHHHcc-CcHHHHHHHHHHhhhhhcc--CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence 35789999988 9999999999886778888 99999999999999999999999999999987 56789999999999
Q ss_pred cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcC
Q 040660 119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPT 167 (487)
Q Consensus 119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~ 167 (487)
.|+.++.++|++.|+... ..|.-|+|+-. .|+..|+.+++.++-.+
T Consensus 89 SGn~dvcrllldaGa~~~--~vNsvgrTAaq-mAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 89 SGNQDVCRLLLDAGARMY--LVNSVGRTAAQ-MAAFVGHHECVAIINNH 134 (396)
T ss_pred cCCchHHHHHHhccCccc--cccchhhhHHH-HHHHhcchHHHHHHhcc
Confidence 999999999999999998 99999999999 89999999998877543
No 89
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=99.42 E-value=2.8e-13 Score=96.14 Aligned_cols=54 Identities=46% Similarity=0.645 Sum_probs=25.3
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHH
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL 96 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll 96 (487)
|.||||+|+.. |+.+++++|+++|.+++.+ |.+|.||||+|+..|+.+++++||
T Consensus 1 g~t~lh~A~~~-g~~~~~~~Ll~~~~din~~--d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARS-GNLEIVKLLLEHGADINAQ--DEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHT-T-HHHHHHHHHTTSGTT-B---TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHh-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHHccCHHHHHHHC
Confidence 44555555555 5555555555555555554 455555555555555555555543
No 90
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=99.31 E-value=1.1e-12 Score=91.18 Aligned_cols=48 Identities=35% Similarity=0.917 Sum_probs=42.2
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
..|.||++.+.+++++||||.++|..|+.++......||+||++|+++
T Consensus 3 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V 50 (50)
T PF13920_consen 3 EECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV 50 (50)
T ss_dssp SB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred CCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence 589999999999999999999559999999988888999999999864
No 91
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.9e-12 Score=117.64 Aligned_cols=51 Identities=39% Similarity=0.998 Sum_probs=48.8
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeeeC
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYAV 487 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~v 487 (487)
..+|.||||.+++.+|++|||++.|+.|.++|. .||+||+.|.+++|||.|
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkrm~----eCPICRqyi~rvvrif~~ 350 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKRMN----ECPICRQYIVRVVRIFRV 350 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccccc----cCchHHHHHHHHHhhhcC
Confidence 579999999999999999999999999999998 499999999999999986
No 92
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.2e-11 Score=116.94 Aligned_cols=56 Identities=29% Similarity=0.858 Sum_probs=51.6
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
++..+|+||+...++.+++||+|+++|..|++.+.-+...||+||++|...+.||.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ll~i~~ 343 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEELLEIYV 343 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHhhheecc
Confidence 44579999999999999999999999999999999777889999999999998874
No 93
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=4.5e-11 Score=106.41 Aligned_cols=56 Identities=36% Similarity=0.785 Sum_probs=48.8
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc---CCcccccccccc--ceeEeee
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK---KWGCPVCRANIS--QVIRLYA 486 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~--~~~~~y~ 486 (487)
.....+|.||+|..+++|++.|||.| |+.|+.+|... +..||+|+..|+ +++.||-
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLF-CWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLF-CWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccce-ehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 34558999999999999999999999 99999999865 346999999986 6899984
No 94
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-10 Score=106.18 Aligned_cols=50 Identities=38% Similarity=0.900 Sum_probs=45.4
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEe
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRL 484 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~ 484 (487)
..|.+|+|...++..+||||.| |+.|+..|...+..||+||..+. +++-+
T Consensus 240 ~kC~LCLe~~~~pSaTpCGHiF-CWsCI~~w~~ek~eCPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 240 RKCSLCLENRSNPSATPCGHIF-CWSCILEWCSEKAECPLCREKFQPSKVICL 291 (293)
T ss_pred CceEEEecCCCCCCcCcCcchH-HHHHHHHHHccccCCCcccccCCCcceeee
Confidence 6899999999999999999999 99999999999889999999986 44443
No 95
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.01 E-value=4.1e-10 Score=98.74 Aligned_cols=54 Identities=30% Similarity=0.784 Sum_probs=46.0
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhcc----------------CCcccccccccc--ceeEee
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK----------------KWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~----------------~~~CP~Cr~~i~--~~~~~y 485 (487)
.+..+|.||++...++++++|||.| |+.|+..|... ...||+||..|. .+++||
T Consensus 16 ~~~~~CpICld~~~dPVvT~CGH~F-C~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 16 GGDFDCNICLDQVRDPVVTLCGHLF-CWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred CCccCCccCCCcCCCcEEcCCCchh-HHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 4457999999999999999999999 99999998531 347999999997 477777
No 96
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.95 E-value=2.7e-09 Score=104.12 Aligned_cols=98 Identities=29% Similarity=0.434 Sum_probs=87.1
Q ss_pred CccCCCCChH------HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccC
Q 040660 34 EWIDKEGKTP------LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND 107 (487)
Q Consensus 34 ~~~d~~G~Tp------L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~ 107 (487)
-.+|.+|-|. ||-.++. |+.++.-.||..|+++|..++ ..|.||||.|++.|+..-+++|+-+|||+++.|.
T Consensus 121 ~~rDdD~~~~~~LsrQLhasvRt-~nlet~LRll~lGA~~N~~hp-ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~ 198 (669)
T KOG0818|consen 121 PCRDDDSVTAKDLSKQLHSSVRT-GNLETCLRLLSLGAQANFFHP-EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS 198 (669)
T ss_pred CCCCcchhhHHHHHHHHHHHhhc-ccHHHHHHHHHcccccCCCCc-ccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence 3466666654 7888888 999999999999999999863 5799999999999999999999999999999999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCC
Q 040660 108 DCQTPLEVARAKGFTNVVRAIENHIC 133 (487)
Q Consensus 108 ~g~TpL~~A~~~g~~~~v~~Ll~~ga 133 (487)
+|.||+.+|...||-++.+.|++...
T Consensus 199 ~GmtP~~~AR~~gH~~laeRl~e~~y 224 (669)
T KOG0818|consen 199 SGMTPVDYARQGGHHELAERLVEIQY 224 (669)
T ss_pred CCCcHHHHHHhcCchHHHHHHHHHHH
Confidence 99999999999999999999886543
No 97
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=3.6e-10 Score=96.12 Aligned_cols=52 Identities=38% Similarity=0.880 Sum_probs=45.2
Q ss_pred ccccccccccCCceE--EcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660 433 TSSCVICLDAPVEGA--CVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y 485 (487)
...|+|||+....-+ -..|||.| |..|++.......+||+||+.|+ ++++||
T Consensus 131 ~~~CPiCl~~~sek~~vsTkCGHvF-C~~Cik~alk~~~~CP~C~kkIt~k~~~rI~ 186 (187)
T KOG0320|consen 131 TYKCPICLDSVSEKVPVSTKCGHVF-CSQCIKDALKNTNKCPTCRKKITHKQFHRIY 186 (187)
T ss_pred ccCCCceecchhhccccccccchhH-HHHHHHHHHHhCCCCCCcccccchhhheecc
Confidence 378999999775554 47999999 99999999988889999999886 688888
No 98
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.94 E-value=9.2e-10 Score=106.85 Aligned_cols=97 Identities=22% Similarity=0.244 Sum_probs=87.5
Q ss_pred cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHH-cCCCcccccCCCCCHHH
Q 040660 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLS-YGANALVLNDDCQTPLE 114 (487)
Q Consensus 36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpL~ 114 (487)
++.++.-.++||+.. |.+..++.+.-.|.|++.+ |.+.+|+||+||..|+.+++++||+ .+.+++.+|.+|+|||.
T Consensus 502 ~~~~~~i~~~~aa~~-GD~~alrRf~l~g~D~~~~--DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlD 578 (622)
T KOG0506|consen 502 RENDTVINVMYAAKN-GDLSALRRFALQGMDLETK--DYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLD 578 (622)
T ss_pred ccccchhhhhhhhhc-CCHHHHHHHHHhccccccc--ccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcch
Confidence 345677889999999 9999999999999999998 9999999999999999999999997 47899999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCcc
Q 040660 115 VARAKGFTNVVRAIENHICIF 135 (487)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~ga~~ 135 (487)
-|...+|.+++++|.+.....
T Consensus 579 dA~~F~h~~v~k~L~~~~~~y 599 (622)
T KOG0506|consen 579 DAKHFKHKEVVKLLEEAQYPY 599 (622)
T ss_pred HhHhcCcHHHHHHHHHHhccc
Confidence 999999999999998776543
No 99
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.92 E-value=8.9e-10 Score=113.41 Aligned_cols=75 Identities=21% Similarity=0.231 Sum_probs=56.3
Q ss_pred CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHH
Q 040660 73 GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND-DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLE 149 (487)
Q Consensus 73 d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~ 149 (487)
|..|+|+||+|+..|..+++++||++|+|++.+|. .|+||||-|+.+|+++++-+|+.+|+.+. .+|+.|..||+
T Consensus 49 D~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~--i~Dkeglsplq 124 (1267)
T KOG0783|consen 49 DRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLR--IKDKEGLSPLQ 124 (1267)
T ss_pred HhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceE--EecccCCCHHH
Confidence 67777777777777777777777777777777774 57777777777777777777777777776 77777777777
No 100
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.86 E-value=9.7e-09 Score=101.69 Aligned_cols=119 Identities=21% Similarity=0.255 Sum_probs=94.2
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC--ccccCCCCCCCcHHHHHHHhCC
Q 040660 11 LYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK--VDAYRPGRHGGTPLHHAAKRGL 88 (487)
Q Consensus 11 L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~--~~~~~~d~~g~TpLh~Aa~~g~ 88 (487)
|..|+..+++-.+..+-..|.++-.++.+-.+.||||+.. |+-++|++||.+|.. ++.. |..|.|+||-|+..++
T Consensus 870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~t-g~~eivkyildh~p~elld~~--de~get~lhkaa~~~~ 946 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKT-GNGEIVKYILDHGPSELLDMA--DETGETALHKAACQRN 946 (1004)
T ss_pred HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhc-CChHHHHHHHhcCCHHHHHHH--hhhhhHHHHHHHHhcc
Confidence 4566777776666666666778777888888888888888 888888888888754 4444 7788888888888888
Q ss_pred HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660 89 ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132 (487)
Q Consensus 89 ~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 132 (487)
..+.++|++.|+.+-..|..|.||-.-|-..|..++..||..+.
T Consensus 947 r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 947 RAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred hHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence 88888888888888888888888888888888888888887553
No 101
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.85 E-value=1.6e-09 Score=70.80 Aligned_cols=38 Identities=42% Similarity=1.001 Sum_probs=33.5
Q ss_pred cccccccCCce-EEcCCCCccchHhhHHHHhccCCccccc
Q 040660 436 CVICLDAPVEG-ACVPCGHMAGCMSCLNEVKAKKWGCPVC 474 (487)
Q Consensus 436 C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~C 474 (487)
|+||++...++ ++++|||.| |+.|+.++...+.+||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~f-C~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSF-CKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEE-EHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCch-hHHHHHHHHHCcCCCcCC
Confidence 89999999999 689999999 999999998888899998
No 102
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=8.1e-10 Score=104.73 Aligned_cols=53 Identities=40% Similarity=0.911 Sum_probs=48.4
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
......|+||.+.+.+.+++||||+++|..|.+.+.. ||+||+.|...+++|+
T Consensus 302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~~----CPvCR~rI~~~~k~y~ 354 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLPQ----CPVCRQRIRLVRKRYR 354 (355)
T ss_pred cCCCCceEEecCCccceeeecCCcEEEchHHHhhCCC----CchhHHHHHHHHHHhc
Confidence 4455799999999999999999999999999998875 9999999999999986
No 103
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.83 E-value=2.7e-09 Score=97.99 Aligned_cols=51 Identities=33% Similarity=0.809 Sum_probs=43.7
Q ss_pred cccccccccCCc--------eEEcCCCCccchHhhHHHHhccCCccccccccccceeEee
Q 040660 434 SSCVICLDAPVE--------GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485 (487)
Q Consensus 434 ~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y 485 (487)
.+|+||++...+ +++.+|||.| |..|+.+|...+..||+||..+..+++..
T Consensus 175 ~eC~ICle~~~~~~~~~~~~~vl~~C~H~F-C~~CI~~Wl~~~~tCPlCR~~~~~v~~~r 233 (238)
T PHA02929 175 KECAICMEKVYDKEIKNMYFGILSNCNHVF-CIECIDIWKKEKNTCPVCRTPFISVIKSR 233 (238)
T ss_pred CCCccCCcccccCccccccceecCCCCCcc-cHHHHHHHHhcCCCCCCCCCEeeEEeeee
Confidence 589999997543 3567899999 99999999988889999999999887654
No 104
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.82 E-value=2.4e-09 Score=110.28 Aligned_cols=95 Identities=23% Similarity=0.255 Sum_probs=83.3
Q ss_pred HHHHHHHc-CCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 040660 22 GIKALCRD-GAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99 (487)
Q Consensus 22 ~v~~Ll~~-g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g 99 (487)
-++-++.+ +.+ .|++|..|+|+||+++.. +..+++++||.+|++++.+| -..|+||||-|..+|+++++-+||.+|
T Consensus 32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~-~k~~~l~wLlqhGidv~vqD-~ESG~taLHRaiyyG~idca~lLL~~g 109 (1267)
T KOG0783|consen 32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSE-NKNSFLRWLLQHGIDVFVQD-EESGYTALHRAIYYGNIDCASLLLSKG 109 (1267)
T ss_pred HHHHHHHHhhhhhhhHHHhhccceeeeeecc-chhHHHHHHHhcCceeeecc-ccccchHhhHhhhhchHHHHHHHHhcC
Confidence 34444443 333 688999999999999999 99999999999999999985 467999999999999999999999999
Q ss_pred CCcccccCCCCCHHHHHHH
Q 040660 100 ANALVLNDDCQTPLEVARA 118 (487)
Q Consensus 100 a~~~~~d~~g~TpL~~A~~ 118 (487)
+.+.++|++|..||..-.+
T Consensus 110 ~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 110 RSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred CceEEecccCCCHHHHHhh
Confidence 9999999999999997765
No 105
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=98.82 E-value=1.5e-08 Score=98.94 Aligned_cols=88 Identities=28% Similarity=0.317 Sum_probs=81.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
..-||..++.|+.+..-.||..|+++|+.+ ..|.||||.|++. |+..-+++|+-+|+|++.. |.+|+||+.||-..
T Consensus 134 srQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~-Gq~~Q~ElL~vYGAD~~a~--d~~GmtP~~~AR~~ 210 (669)
T KOG0818|consen 134 SKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKA-GQILQAELLAVYGADPGAQ--DSSGMTPVDYARQG 210 (669)
T ss_pred HHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhc-cchhhhhHHhhccCCCCCC--CCCCCcHHHHHHhc
Confidence 356999999999999999999999999988 4799999999999 9999999999999999998 99999999999999
Q ss_pred CCHHHHHHHHHc
Q 040660 87 GLERTVKLLLSY 98 (487)
Q Consensus 87 g~~~~v~~Ll~~ 98 (487)
||-++.+-|++.
T Consensus 211 gH~~laeRl~e~ 222 (669)
T KOG0818|consen 211 GHHELAERLVEI 222 (669)
T ss_pred CchHHHHHHHHH
Confidence 999988887763
No 106
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=98.81 E-value=4.9e-09 Score=101.94 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=85.2
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpLh~ 82 (487)
+.++-..+++|++.|++..++.+.-.|.|++.+|.+.+|+||.|+.. |+++++++||+. +.+++.+ |.+|+|||--
T Consensus 503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaE-G~v~v~kfl~~~~kv~~~~k--DRw~rtPlDd 579 (622)
T KOG0506|consen 503 ENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAE-GHVEVVKFLLNACKVDPDPK--DRWGRTPLDD 579 (622)
T ss_pred cccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeeccc-CceeHHHHHHHHHcCCCChh--hccCCCcchH
Confidence 34566789999999999999999999999999999999999999999 999999999976 6788887 9999999999
Q ss_pred HHHhCCHHHHHHHHHc
Q 040660 83 AAKRGLERTVKLLLSY 98 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ 98 (487)
|...+|.+++++|-+.
T Consensus 580 A~~F~h~~v~k~L~~~ 595 (622)
T KOG0506|consen 580 AKHFKHKEVVKLLEEA 595 (622)
T ss_pred hHhcCcHHHHHHHHHH
Confidence 9999999999999875
No 107
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.81 E-value=1.2e-08 Score=101.56 Aligned_cols=92 Identities=25% Similarity=0.308 Sum_probs=67.8
Q ss_pred HHHHHhCCCcHHHHHHHHHcCCC--ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC
Q 040660 44 LIAACMNPGLYDVAKTLIELGAK--VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF 121 (487)
Q Consensus 44 L~~A~~~~g~~~~v~~Ll~~ga~--~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~ 121 (487)
|.-|+.. ..+..+-+||.+|.. +|....+.+|+|+||+||+.|++.+.++|+-+|+|+.++|.+|+|+|.||...|.
T Consensus 628 Ll~A~~~-~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s 706 (749)
T KOG0705|consen 628 LLRAVAA-EDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS 706 (749)
T ss_pred HHHHHHH-HHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence 4445555 666777777777743 3333346667888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhCCCccc
Q 040660 122 TNVVRAIENHICIFS 136 (487)
Q Consensus 122 ~~~v~~Ll~~ga~~~ 136 (487)
-+|+.+|+.+|+-..
T Consensus 707 qec~d~llq~gcp~e 721 (749)
T KOG0705|consen 707 QECIDVLLQYGCPDE 721 (749)
T ss_pred HHHHHHHHHcCCCcc
Confidence 888888888886543
No 108
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.79 E-value=2.1e-09 Score=72.41 Aligned_cols=40 Identities=40% Similarity=0.885 Sum_probs=35.0
Q ss_pred ccccccccC---CceEEcCCCCccchHhhHHHHhccCCcccccc
Q 040660 435 SCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCR 475 (487)
Q Consensus 435 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr 475 (487)
+|.||++.. ..++.++|||.| |..|+..|.+.+..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVF-HRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEE-EHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCee-CHHHHHHHHHhCCcCCccC
Confidence 699999876 467778999999 9999999999888999997
No 109
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.78 E-value=4.3e-09 Score=69.57 Aligned_cols=38 Identities=42% Similarity=1.037 Sum_probs=30.6
Q ss_pred cccccccCCceEEcCCCCccchHhhHHHHhccC----Cccccc
Q 040660 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK----WGCPVC 474 (487)
Q Consensus 436 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~----~~CP~C 474 (487)
|+||++.+.+++.++|||.| |..|+.+++... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~F-C~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSF-CRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEE-EHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHH-HHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999 999999998763 259987
No 110
>PF13606 Ank_3: Ankyrin repeat
Probab=98.74 E-value=1.3e-08 Score=62.06 Aligned_cols=28 Identities=50% Similarity=0.619 Sum_probs=12.9
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCcc
Q 040660 76 GGTPLHHAAKRGLERTVKLLLSYGANAL 103 (487)
Q Consensus 76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~ 103 (487)
|+||||+|++.|+.++|++||++|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence 4444444444444444444444444443
No 111
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.73 E-value=1.7e-08 Score=63.35 Aligned_cols=31 Identities=52% Similarity=0.680 Sum_probs=17.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCCccccc
Q 040660 76 GGTPLHHAAKRGLERTVKLLLSYGANALVLN 106 (487)
Q Consensus 76 g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d 106 (487)
|.||||+|+..|+.+++++||++|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence 5555555555555555555555555555544
No 112
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=98.69 E-value=6.7e-08 Score=95.86 Aligned_cols=119 Identities=18% Similarity=0.095 Sum_probs=101.5
Q ss_pred HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC--cccccCCCCCHHHHHHHcCC
Q 040660 44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN--ALVLNDDCQTPLEVARAKGF 121 (487)
Q Consensus 44 L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~--~~~~d~~g~TpL~~A~~~g~ 121 (487)
|..|+.. +.+--++.+-..|.++-.+ +.+..+-||||++.|+.++|++||++|.. +++.|..|.|+||-|+..++
T Consensus 870 il~av~~-~D~~klqE~h~~gg~ll~~--~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~ 946 (1004)
T KOG0782|consen 870 ILRAVLS-SDLMKLQETHLNGGSLLIQ--GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRN 946 (1004)
T ss_pred HHHHHHh-ccHHHHHHHHhcCCceEee--CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcc
Confidence 3445555 5444444455678888887 88899999999999999999999999964 67788999999999999999
Q ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 122 TNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 122 ~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
..+..+|++.|+.+. ..|..|.||-. -|.+.+..++..+|-.+.
T Consensus 947 r~vc~~lvdagasl~--ktd~kg~tp~e-raqqa~d~dlaayle~rq 990 (1004)
T KOG0782|consen 947 RAVCQLLVDAGASLR--KTDSKGKTPQE-RAQQAGDPDLAAYLESRQ 990 (1004)
T ss_pred hHHHHHHHhcchhhe--ecccCCCChHH-HHHhcCCchHHHHHhhhh
Confidence 999999999999998 89999999999 899999999999887543
No 113
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=98.66 E-value=6e-08 Score=96.56 Aligned_cols=90 Identities=28% Similarity=0.351 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCC--C--ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 9 ELLYQQVNYGNVEGIKALCRDGAGL--E--WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 9 t~L~~Aa~~g~~~~v~~Ll~~g~~~--~--~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
.-|.-|+...++..+.+||.+|... | .-+.+|.|+||+||.. |++.+.++||-+|+|+.++ |.+|+|+|.||-
T Consensus 626 qqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~-gnVvl~QLLiWyg~dv~~r--da~g~t~l~yar 702 (749)
T KOG0705|consen 626 QQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARK-GNVVLAQLLIWYGVDVMAR--DAHGRTALFYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhh-cchhHHHHHHHhCccceec--ccCCchhhhhHh
Confidence 3467788889999999999998653 2 2345789999999999 9999999999999999998 999999999999
Q ss_pred HhCCHHHHHHHHHcCCC
Q 040660 85 KRGLERTVKLLLSYGAN 101 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~ 101 (487)
+.|..+++..||.+|+-
T Consensus 703 ~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCP 719 (749)
T ss_pred hcccHHHHHHHHHcCCC
Confidence 99999999999999864
No 114
>PF13606 Ank_3: Ankyrin repeat
Probab=98.65 E-value=3.1e-08 Score=60.39 Aligned_cols=28 Identities=46% Similarity=0.680 Sum_probs=17.5
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCcc
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKVD 68 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~ 68 (487)
|+||||+||.. |+.+++++||++|+|+|
T Consensus 2 G~T~Lh~A~~~-g~~e~v~~Ll~~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASN-GNIEIVKYLLEHGADVN 29 (30)
T ss_pred CCCHHHHHHHh-CCHHHHHHHHHcCCCCC
Confidence 56666666666 66666666666666654
No 115
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.62 E-value=9.2e-08 Score=94.84 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=52.1
Q ss_pred HHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660 10 LLYQQVNYGNVEGIKALCRD--GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87 (487)
Q Consensus 10 ~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g 87 (487)
+||+++...+.+-...++.. +..++.+|..|.||||+|+.. |+.+.++.|+.+|+++..+ ++.|+++||-|+..|
T Consensus 23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~L-g~~~~a~~Ll~a~Adv~~k--N~~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRL-GHVEAARILLSAGADVSIK--NNEGWSPLHEAVSTG 99 (560)
T ss_pred ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHh-cCHHHHHHHHhcCCCcccc--ccccccHHHHHHHcC
Confidence 36666666555544443322 334566666666666666666 6666666666666666665 666666666666666
Q ss_pred CHHHHHHHHH
Q 040660 88 LERTVKLLLS 97 (487)
Q Consensus 88 ~~~~v~~Ll~ 97 (487)
+.+++..+|.
T Consensus 100 ~~q~i~~vlr 109 (560)
T KOG0522|consen 100 NEQIITEVLR 109 (560)
T ss_pred CHHHHHHHHH
Confidence 6666655554
No 116
>PHA02926 zinc finger-like protein; Provisional
Probab=98.58 E-value=2.4e-08 Score=88.37 Aligned_cols=50 Identities=26% Similarity=0.724 Sum_probs=39.7
Q ss_pred cccccccccccCC---------ceEEcCCCCccchHhhHHHHhccC------Ccccccccccccee
Q 040660 432 ATSSCVICLDAPV---------EGACVPCGHMAGCMSCLNEVKAKK------WGCPVCRANISQVI 482 (487)
Q Consensus 432 ~~~~C~iC~~~~~---------~~~~~pCgH~~~C~~C~~~~~~~~------~~CP~Cr~~i~~~~ 482 (487)
.+.+|.||+|... -.++.+|+|.| |..|+..|...+ ..||+||..+..++
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsF-Cl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~ 233 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIF-CITCINIWHRTRRETGASDNCPICRTRFRNIT 233 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchH-HHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence 3468999998742 25667999999 999999998742 35999999988654
No 117
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=98.58 E-value=7.9e-08 Score=60.29 Aligned_cols=31 Identities=39% Similarity=0.591 Sum_probs=19.7
Q ss_pred CCChHHHHHHhCCCcHHHHHHHHHcCCCcccc
Q 040660 39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAY 70 (487)
Q Consensus 39 ~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~ 70 (487)
+|+||||+|+.. |+.+++++||++|++++.+
T Consensus 1 dG~TpLh~A~~~-~~~~~v~~Ll~~ga~~~~~ 31 (33)
T PF00023_consen 1 DGNTPLHYAAQR-GHPDIVKLLLKHGADINAR 31 (33)
T ss_dssp TSBBHHHHHHHT-TCHHHHHHHHHTTSCTTCB
T ss_pred CcccHHHHHHHH-HHHHHHHHHHHCcCCCCCC
Confidence 356666666666 6666666666666666654
No 118
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.56 E-value=2.5e-07 Score=96.97 Aligned_cols=121 Identities=18% Similarity=0.107 Sum_probs=100.7
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcC----CCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDG----AGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g----~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.+...+..|+++|+.-.|+..++.. .++|.+|.-|+++|++|+.+ .+.|++++|++++..+ ..+|-
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~n-enle~~eLLl~~~~~~---------gdALL 93 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDN-ENLELQELLLDTSSEE---------GDALL 93 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceeccccc-ccHHHHHHHhcCcccc---------chHHH
Confidence 3455677899999999999999863 45788999999999999999 9999999999986544 34899
Q ss_pred HHHHhCCHHHHHHHHHcCCCcc----------cccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660 82 HAAKRGLERTVKLLLSYGANAL----------VLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~----------~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 136 (487)
+|+..|..++|++|+.+-.... ..-..+-|||++||..++.||+++|+++|+.+.
T Consensus 94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 9999999999999998643321 122356799999999999999999999999876
No 119
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.55 E-value=5e-08 Score=65.53 Aligned_cols=41 Identities=37% Similarity=0.937 Sum_probs=35.0
Q ss_pred ccccccccC---CceEEcCCCCccchHhhHHHHhccCCccccccc
Q 040660 435 SCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRA 476 (487)
Q Consensus 435 ~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~ 476 (487)
.|.||++.+ ..+.+++|||.| |..|+..+......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~-C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIF-CEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHH-HHHHHHhhcCCCCCCcCCCC
Confidence 489999887 467789999999 99999999855568999985
No 120
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.55 E-value=1.7e-07 Score=93.01 Aligned_cols=87 Identities=28% Similarity=0.394 Sum_probs=72.8
Q ss_pred hHHHHHHhCCCcHHH-HHHHHHc-CCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHc
Q 040660 42 TPLIAACMNPGLYDV-AKTLIEL-GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119 (487)
Q Consensus 42 TpL~~A~~~~g~~~~-v~~Ll~~-ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~ 119 (487)
-|||+++.. ...+- .+.|+.. ...++.+ |..|.||||+|+..|+.+.++.|+..|+++..+|++||+|||.|+..
T Consensus 22 ~~lh~~~~~-~~~~sl~~el~~~~~~~id~~--D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~ 98 (560)
T KOG0522|consen 22 KPLHWAVVT-TDSDSLEQELLAKVSLVIDRR--DPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVST 98 (560)
T ss_pred cccchhhhc-cchhhHHHHHhhhhhceeccc--cCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHc
Confidence 459999988 55544 4444333 4556666 89999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhC
Q 040660 120 GFTNVVRAIENH 131 (487)
Q Consensus 120 g~~~~v~~Ll~~ 131 (487)
|+.+++..++.+
T Consensus 99 g~~q~i~~vlr~ 110 (560)
T KOG0522|consen 99 GNEQIITEVLRH 110 (560)
T ss_pred CCHHHHHHHHHH
Confidence 999888777755
No 121
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.51 E-value=7e-08 Score=63.89 Aligned_cols=38 Identities=37% Similarity=0.932 Sum_probs=34.5
Q ss_pred cccccccCCceE-EcCCCCccchHhhHHHHhc--cCCccccc
Q 040660 436 CVICLDAPVEGA-CVPCGHMAGCMSCLNEVKA--KKWGCPVC 474 (487)
Q Consensus 436 C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~--~~~~CP~C 474 (487)
|.||++...+++ +++|||.| |..|+.++.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~f-C~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSF-CRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEE-EHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcc-hHHHHHHHHHhcCCccCCcC
Confidence 889999999999 89999999 9999999987 35589998
No 122
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.44 E-value=1.2e-07 Score=63.89 Aligned_cols=43 Identities=42% Similarity=0.970 Sum_probs=35.6
Q ss_pred ccccccccCCceEEc-CCCCccchHhhHHHHhcc-CCccccccccc
Q 040660 435 SCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAK-KWGCPVCRANI 478 (487)
Q Consensus 435 ~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i 478 (487)
.|.||++.....+.+ +|||.| |..|+..+... ...||+||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVF-CRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChh-cHHHHHHHHHhCcCCCCCCCCcC
Confidence 499999998555555 599999 99999999876 66899999754
No 123
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.43 E-value=1.7e-07 Score=68.60 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=43.9
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEe
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRL 484 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~ 484 (487)
..|+||.+...+++.++|||.| |..|+..+......||+|+.++. .++++
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~-~~~~i~~~~~~~~~cP~~~~~~~~~~l~~~ 53 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTY-ERRAIEKWLLSHGTDPVTGQPLTHEDLIPN 53 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEE-eHHHHHHHHHHCCCCCCCcCCCChhhceeC
Confidence 4699999999999999999999 99999999887778999999984 34444
No 124
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.9e-08 Score=87.01 Aligned_cols=46 Identities=43% Similarity=1.071 Sum_probs=40.1
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHH-HhccCC-cccccccccc
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNE-VKAKKW-GCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~~~~~-~CP~Cr~~i~ 479 (487)
.+.|.||++.+..++.++|||.| |+.|+-. |..++. .||+||+.+.
T Consensus 215 d~kC~lC~e~~~~ps~t~CgHlF-C~~Cl~~~~t~~k~~~CplCRak~~ 262 (271)
T COG5574 215 DYKCFLCLEEPEVPSCTPCGHLF-CLSCLLISWTKKKYEFCPLCRAKVY 262 (271)
T ss_pred ccceeeeecccCCcccccccchh-hHHHHHHHHHhhccccCchhhhhcc
Confidence 37899999999999999999999 9999999 555544 4999999774
No 125
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.40 E-value=1.4e-07 Score=93.15 Aligned_cols=50 Identities=28% Similarity=0.588 Sum_probs=44.4
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
.+....|.||++.+.++++++|||.| |..|+..+......||+||..+..
T Consensus 23 Le~~l~C~IC~d~~~~PvitpCgH~F-Cs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 23 LDTSLRCHICKDFFDVPVLTSCSHTF-CSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred cccccCCCcCchhhhCccCCCCCCch-hHHHHHHHHhCCCCCCCCCCcccc
Confidence 34557999999999999999999999 999999998877789999998753
No 126
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.33 E-value=6.1e-07 Score=96.64 Aligned_cols=100 Identities=23% Similarity=0.170 Sum_probs=70.1
Q ss_pred HcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc
Q 040660 62 ELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE 141 (487)
Q Consensus 62 ~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d 141 (487)
..++++|....-..|.|+||.|+..|..-++++|++.|+++|..|..|+||||.+...|+...+.+|+++|++.+ ..+
T Consensus 642 ~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~--a~~ 719 (785)
T KOG0521|consen 642 AHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN--AFD 719 (785)
T ss_pred cchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc--ccC
Confidence 344444443224557778888888888888888888888888888888888888888888888888888888777 777
Q ss_pred cCCCCHHHHHhhhcCCHHHHHHh
Q 040660 142 LYGPGFLELLAPQLLSRKVWVAV 164 (487)
Q Consensus 142 ~~G~t~L~~~a~~~~~~~~~~~L 164 (487)
..|.++|+ +|....+.+++-++
T Consensus 720 ~~~~~~l~-~a~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 720 PDGKLPLD-IAMEAANADIVLLL 741 (785)
T ss_pred ccCcchhh-HHhhhccccHHHHH
Confidence 77888887 55433555544443
No 127
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.32 E-value=4.3e-07 Score=59.01 Aligned_cols=38 Identities=37% Similarity=0.974 Sum_probs=33.9
Q ss_pred cccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccc
Q 040660 436 CVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVC 474 (487)
Q Consensus 436 C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~C 474 (487)
|.||++.....+.++|||.| |..|+..+.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~-c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTF-CRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChH-HHHHHHHHHHhCcCCCCCC
Confidence 78999999999999999999 9999999876 45579987
No 128
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.31 E-value=3.3e-07 Score=60.51 Aligned_cols=30 Identities=37% Similarity=0.934 Sum_probs=21.2
Q ss_pred cccccccCCc----eEEcCCCCccchHhhHHHHhcc
Q 040660 436 CVICLDAPVE----GACVPCGHMAGCMSCLNEVKAK 467 (487)
Q Consensus 436 C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~ 467 (487)
|+||++ +.+ ++.++|||.| |..|+++|...
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~-c~~cl~~l~~~ 34 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVF-CKDCLQKLSKK 34 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EE-EHHHHHHHHHH
T ss_pred CCcccc-ccCCCCCCEEEeCccHH-HHHHHHHHHhc
Confidence 899999 777 8999999999 99999999874
No 129
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.29 E-value=1.8e-06 Score=74.76 Aligned_cols=68 Identities=24% Similarity=0.231 Sum_probs=46.7
Q ss_pred CCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 65 AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 65 a~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
.++|.+ |..|+|+||.|+..|..+.+.+|+.+| +++...|..|.+++.+|-+.|+.++|..|.+.-.+
T Consensus 3 ~~in~r--D~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 3 GNINAR--DAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCccch--hhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 456665 667777777777777777777777777 66677777777777777777777777777666444
No 130
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=98.28 E-value=8.1e-07 Score=95.72 Aligned_cols=98 Identities=30% Similarity=0.410 Sum_probs=86.4
Q ss_pred cCCCCCccC--CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc
Q 040660 29 DGAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106 (487)
Q Consensus 29 ~g~~~~~~d--~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d 106 (487)
+++++|+.+ ..|.|+||.|+.. |..-++++|++.|+++|.+ |..|+||||.+...|+...+.+|+++|++.++.+
T Consensus 643 ~~~~~n~~~~~~~~~s~lh~a~~~-~~~~~~e~ll~~ga~vn~~--d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~ 719 (785)
T KOG0521|consen 643 HGCCENWPVVLCIGCSLLHVAVGT-GDSGAVELLLQNGADVNAL--DSKGRTPLHHATASGHTSIACLLLKRGADPNAFD 719 (785)
T ss_pred chhhhccchhhhcccchhhhhhcc-chHHHHHHHHhcCCcchhh--hccCCCcchhhhhhcccchhhhhccccccccccC
Confidence 455555533 4689999999999 9999999999999999998 9999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHcCCHHHHHHHH
Q 040660 107 DDCQTPLEVARAKGFTNVVRAIE 129 (487)
Q Consensus 107 ~~g~TpL~~A~~~g~~~~v~~Ll 129 (487)
.+|.++|++|....+.+++-+|.
T Consensus 720 ~~~~~~l~~a~~~~~~d~~~l~~ 742 (785)
T KOG0521|consen 720 PDGKLPLDIAMEAANADIVLLLR 742 (785)
T ss_pred ccCcchhhHHhhhccccHHHHHh
Confidence 99999999998877777766554
No 131
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.28 E-value=7e-07 Score=95.58 Aligned_cols=122 Identities=26% Similarity=0.260 Sum_probs=66.7
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHH-HcCCCccccCCCCCCCcHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpLh~A 83 (487)
.|++.||+++..++.-+++.+++. |......|.+|.-.+|+++. ++++.+-+|+ -.|..++++ |..|+||||||
T Consensus 573 r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~--lg~ewA~ll~~~~~~ai~i~--D~~G~tpL~wA 648 (975)
T KOG0520|consen 573 RDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA--LGYEWAFLPISADGVAIDIR--DRNGWTPLHWA 648 (975)
T ss_pred cchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh--cCCceeEEEEeecccccccc--cCCCCcccchH
Confidence 355666666666666666666654 44444555555555665333 3344444333 345555555 66666666666
Q ss_pred HHhCCHHHHHHHHHcCCCccc------ccCCCCCHHHHHHHcCCHHHHHHHHhC
Q 040660 84 AKRGLERTVKLLLSYGANALV------LNDDCQTPLEVARAKGFTNVVRAIENH 131 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~------~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 131 (487)
+.+|+..++..|++.|++... ..-.|.|+-.+|..+|+..+.-+|-+.
T Consensus 649 a~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 649 AFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred hhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 666666666666655543322 222455666666666666655555443
No 132
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=4.4e-07 Score=90.11 Aligned_cols=53 Identities=28% Similarity=0.773 Sum_probs=44.6
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHHhccC-----Cccccccccccc--eeEeee
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK-----WGCPVCRANISQ--VIRLYA 486 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-----~~CP~Cr~~i~~--~~~~y~ 486 (487)
...|+||++.+.-++.+.|||.| |..|+-+.+... ..||+||..|.- +..+|.
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiF-C~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIF-CGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCcee-eHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 46899999999999999999999 999999976643 379999999975 655553
No 133
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.22 E-value=4.3e-06 Score=79.71 Aligned_cols=75 Identities=27% Similarity=0.326 Sum_probs=53.7
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
.--|..|++.|+++.|+.|++.|.++|.+|.....||.+|+.- ||.++|++|+++||-..-- ..+|... ||++.+
T Consensus 37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLc-GHe~vvklLLenGAiC~rd--tf~G~RC-~YgaLn 111 (516)
T KOG0511|consen 37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLC-GHEDVVKLLLENGAICSRD--TFDGDRC-HYGALN 111 (516)
T ss_pred hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHc-CcHHHHHHHHHcCCccccc--ccCcchh-hhhhhh
Confidence 3457788888888888888888888888888888888888888 8888888888888754431 3344443 555554
No 134
>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]
Probab=98.22 E-value=2.9e-06 Score=73.58 Aligned_cols=74 Identities=22% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC-CCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc
Q 040660 30 GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN 106 (487)
Q Consensus 30 g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d 106 (487)
+.++|.+|..|+|+||.|+.. |..+.+.+|+.+| +.+... |..|.+++.+|-+.|+.++|+.|.+...+-...+
T Consensus 2 e~~in~rD~fgWTalmcaa~e-g~~eavsyllgrg~a~vgv~--d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~ 76 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAME-GSNEAVSYLLGRGVAFVGVT--DESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM 76 (223)
T ss_pred CCCccchhhhcchHHHHHhhh-cchhHHHHHhccCccccccc--ccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence 467899999999999999999 9999999999999 888887 9999999999999999999999998755443333
No 135
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.21 E-value=4.6e-07 Score=82.85 Aligned_cols=49 Identities=29% Similarity=0.558 Sum_probs=44.5
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
+.-..|-||-+....++.++|||.| |..|+++.....+.||+||.+...
T Consensus 23 Ds~lrC~IC~~~i~ip~~TtCgHtF-CslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 23 DSMLRCRICDCRISIPCETTCGHTF-CSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred hhHHHhhhhhheeecceecccccch-hHHHHHHHhcCCCCCccccccHHh
Confidence 4447899999999999999999999 999999999988999999988753
No 136
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.19 E-value=4.6e-07 Score=84.64 Aligned_cols=49 Identities=27% Similarity=0.618 Sum_probs=45.0
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
+....|-||+|-+..++++||+|.| |..|++......+.||.|+.+++.
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtf-CSlCIR~~L~~~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTF-CSLCIRKFLSYKPQCPTCCVTVTE 69 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchH-HHHHHHHHhccCCCCCceecccch
Confidence 4457899999999999999999999 999999999999999999998863
No 137
>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=98.12 E-value=8.6e-06 Score=85.70 Aligned_cols=126 Identities=21% Similarity=0.161 Sum_probs=101.5
Q ss_pred CCCChHHHHHHhCCCcHHHHHHHHHcCC----CccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHH
Q 040660 38 KEGKTPLIAACMNPGLYDVAKTLIELGA----KVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPL 113 (487)
Q Consensus 38 ~~G~TpL~~A~~~~g~~~~v~~Ll~~ga----~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL 113 (487)
..+.--...|+.. |+.-.|+..++... ++|.+ |.-|+++|++|..+.+.+++++|++++.+. ..+|
T Consensus 23 ~~~e~~fL~a~E~-gd~~~V~k~l~~~~~~~lninc~--d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdAL 92 (822)
T KOG3609|consen 23 NEGEKGFLLAHEN-GDVPLVAKALEYKAVSKLNINCR--DPLGRLALHIAIDNENLELQELLLDTSSEE-------GDAL 92 (822)
T ss_pred chhhHHHHHHHHc-CChHHHHHHHHhccccccchhcc--ChHhhhceecccccccHHHHHHHhcCcccc-------chHH
Confidence 3445557789999 99999988887543 45555 999999999999999999999999987654 4589
Q ss_pred HHHHHcCCHHHHHHHHhCCCccccc--------ccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCC
Q 040660 114 EVARAKGFTNVVRAIENHICIFSGW--------LRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTK 174 (487)
Q Consensus 114 ~~A~~~g~~~~v~~Ll~~ga~~~~~--------~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~ 174 (487)
.+|+..|.+++|++|+.+-....+. ..=..+.|||. +|+..++.||+++|+.+|+.+...
T Consensus 93 L~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli-LAAh~NnyEil~~Ll~kg~~i~~P 160 (822)
T KOG3609|consen 93 LLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM-LAAHLNNFEILQCLLTRGHCIPIP 160 (822)
T ss_pred HHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH-HHHHhcchHHHHHHHHcCCCCCCC
Confidence 9999999999999999886543210 11135789999 999999999999999999987543
No 138
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=98.10 E-value=1.1e-05 Score=76.91 Aligned_cols=85 Identities=29% Similarity=0.298 Sum_probs=68.5
Q ss_pred ChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcC
Q 040660 41 KTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKG 120 (487)
Q Consensus 41 ~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g 120 (487)
+--|.+||+. |..+.|+.|++.|.++|.+ |.....||.+|+..||.++|++||+.||-...-.-+|... |+++.+.
T Consensus 37 f~elceacR~-GD~d~v~~LVetgvnVN~v--D~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd 112 (516)
T KOG0511|consen 37 FGELCEACRA-GDVDRVRYLVETGVNVNAV--DRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND 112 (516)
T ss_pred hHHHHHHhhc-ccHHHHHHHHHhCCCcchh--hcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH
Confidence 4558899999 9999999999999999998 9999999999999999999999999998665444566655 4444433
Q ss_pred CHHHHHHHHhC
Q 040660 121 FTNVVRAIENH 131 (487)
Q Consensus 121 ~~~~v~~Ll~~ 131 (487)
.|-++|+.+
T Consensus 113 --~IR~mllsy 121 (516)
T KOG0511|consen 113 --RIRRMLLSY 121 (516)
T ss_pred --HHHHHHHHH
Confidence 344455544
No 139
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.10 E-value=2.6e-06 Score=63.97 Aligned_cols=40 Identities=30% Similarity=0.798 Sum_probs=33.0
Q ss_pred ccccccccC-------------CceEEcCCCCccchHhhHHHHhccCCcccccc
Q 040660 435 SCVICLDAP-------------VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCR 475 (487)
Q Consensus 435 ~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr 475 (487)
.|.||++.. ...+..+|||.| ...|+.+|......||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIF-HFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEE-EHHHHHHHHTTSSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCE-EHHHHHHHHhcCCcCCCCC
Confidence 599999876 333456999999 9999999998888999998
No 140
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.08 E-value=4.8e-06 Score=89.36 Aligned_cols=130 Identities=14% Similarity=-0.037 Sum_probs=103.1
Q ss_pred CCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHHHHHHHhCCHHHHHHHH-HcCCCcccccCCCC
Q 040660 33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLL-SYGANALVLNDDCQ 110 (487)
Q Consensus 33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll-~~ga~~~~~d~~g~ 110 (487)
.......|+|.||+++.. +..-.++.+++- |...... |.+|...+|+ |..++.+++-+|+ -.|..++.+|..||
T Consensus 567 ~~~~~~r~~lllhL~a~~-lyawLie~~~e~~~~~~~el--d~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~ 642 (975)
T KOG0520|consen 567 SSSVNFRDMLLLHLLAEL-LYAWLIEKVIEWAGSGDLEL--DRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGW 642 (975)
T ss_pred cccCCCcchHHHHHHHHH-hHHHHHHHHhcccccCchhh--cccCCChhhH-hhhcCCceeEEEEeecccccccccCCCC
Confidence 344556799999999999 998899999886 6555555 7888889999 5556666655555 46788999999999
Q ss_pred CHHHHHHHcCCHHHHHHHHhCCCccc----ccccccCCCCHHHHHhhhcCCHHHHHHhhcC
Q 040660 111 TPLEVARAKGFTNVVRAIENHICIFS----GWLRELYGPGFLELLAPQLLSRKVWVAVLPT 167 (487)
Q Consensus 111 TpL~~A~~~g~~~~v~~Ll~~ga~~~----~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~ 167 (487)
||||||+.+|+..++..|+..|++.. .....-.|.|+-. ++...++..+..+|-+.
T Consensus 643 tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~-la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 643 TPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAAD-LARANGHKGIAGYLSEK 702 (975)
T ss_pred cccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhh-hhhcccccchHHHHhhh
Confidence 99999999999999999998887643 1133356889998 88888888888887655
No 141
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.97 E-value=1.6e-06 Score=90.54 Aligned_cols=52 Identities=25% Similarity=0.626 Sum_probs=45.3
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHHhc-cCCcccccccccc--ceeEee
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~--~~~~~y 485 (487)
-..|++|.+++.++++..|||.| |+.|+..... +..+||.|...|. .+.+||
T Consensus 643 ~LkCs~Cn~R~Kd~vI~kC~H~F-C~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~ 697 (698)
T KOG0978|consen 643 LLKCSVCNTRWKDAVITKCGHVF-CEECVQTRYETRQRKCPKCNAAFGANDVHRIH 697 (698)
T ss_pred ceeCCCccCchhhHHHHhcchHH-HHHHHHHHHHHhcCCCCCCCCCCCcccccccC
Confidence 36899999999999999999999 9999998644 3458999999995 688887
No 142
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=97.95 E-value=7.6e-06 Score=61.54 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=39.1
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 480 (487)
+...|+||.+...++|.+||||.| +..|+.+|... ...||+|++++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~ty-er~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTY-ERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEE-EHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEE-cHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 347899999999999999999999 99999999988 6789999999874
No 143
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.6e-06 Score=79.06 Aligned_cols=46 Identities=30% Similarity=0.875 Sum_probs=38.7
Q ss_pred cccccccccccC-------------CceEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660 432 ATSSCVICLDAP-------------VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 432 ~~~~C~iC~~~~-------------~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
+++.|.||||.. ..+.-+||||.+ ...|++.|..+...||+||.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHil-Hl~CLknW~ERqQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHIL-HLHCLKNWLERQQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCccccccccee-eHHHHHHHHHhccCCCcccCcc
Confidence 346899999972 223568999999 9999999999888999999995
No 144
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.92 E-value=4.5e-06 Score=77.10 Aligned_cols=48 Identities=29% Similarity=0.642 Sum_probs=39.3
Q ss_pred CcccccccccccC---CceEEcCCCCccchHhhHHHHhc-cCCcccccccccc
Q 040660 431 DATSSCVICLDAP---VEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~ 479 (487)
+...+|.|||+.+ ...+.+||.|.| ...|+.+|.. -+.+||+||.+|-
T Consensus 321 ~~GveCaICms~fiK~d~~~vlPC~H~F-H~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 321 DKGVECAICMSNFIKNDRLRVLPCDHRF-HVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCCceEEEEhhhhcccceEEEeccCcee-chhHHHHHHhhhcccCCccCCCCC
Confidence 3447999999865 335678999999 9999999987 4668999999874
No 145
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.7e-06 Score=77.19 Aligned_cols=47 Identities=28% Similarity=0.580 Sum_probs=41.0
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccce
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQV 481 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~ 481 (487)
.+|.||+....-++.++|+|.| |+.|++..-.. +..|++||.+|..-
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkF-CyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKF-CYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchh-hhhhhcchhhcCCCCCceecCCCCcc
Confidence 5899999999999999999999 99999986554 44699999999864
No 146
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.7e-06 Score=75.63 Aligned_cols=48 Identities=25% Similarity=0.630 Sum_probs=42.9
Q ss_pred ccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 435 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
.|..|.++...++++||.|.++|..|...+. .||+|+.++...+.+|.
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~~~----~CPiC~~~~~s~~~v~~ 207 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDESLR----ICPICRSPKTSSVEVNF 207 (207)
T ss_pred cceecCcCCceEEeecccceEecccccccCc----cCCCCcChhhceeeccC
Confidence 3999999999999999999999999988744 49999999998888773
No 147
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.80 E-value=8e-06 Score=78.07 Aligned_cols=47 Identities=34% Similarity=0.805 Sum_probs=42.4
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhcc--CCccccccccccce
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANISQV 481 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~~ 481 (487)
..|.||-|..+++...||||.. |..|+..|... ...||.||-.|...
T Consensus 370 eLCKICaendKdvkIEPCGHLl-Ct~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLL-CTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhccCCCcccccccchH-HHHHHHhhcccCCCCCCCceeeEeccc
Confidence 6899999999999999999999 99999999854 34799999999864
No 148
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=1.5e-05 Score=76.86 Aligned_cols=46 Identities=30% Similarity=0.798 Sum_probs=38.5
Q ss_pred cccccccccCCce---EEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660 434 SSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 480 (487)
..|.||+|.+... ..+||.|.| ...|+..|..+.+ .||+|++.|.+
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~F-H~~CIDpWL~~~r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKF-HVNCIDPWLTQTRTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCch-hhccchhhHhhcCccCCCCCCcCCC
Confidence 5899999977543 358999999 9999999998865 59999998754
No 149
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.8e-05 Score=74.65 Aligned_cols=49 Identities=24% Similarity=0.723 Sum_probs=43.5
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
++..|+||+..+.+++|.||+|.- |+.|+.+..-+.+.|=.|+..|..+
T Consensus 421 Ed~lCpICyA~pi~Avf~PC~H~S-C~~CI~qHlmN~k~CFfCktTv~~~ 469 (489)
T KOG4692|consen 421 EDNLCPICYAGPINAVFAPCSHRS-CYGCITQHLMNCKRCFFCKTTVIDV 469 (489)
T ss_pred ccccCcceecccchhhccCCCCch-HHHHHHHHHhcCCeeeEecceeeeh
Confidence 457999999999999999999999 9999999877777899998887643
No 150
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=2.3e-05 Score=77.44 Aligned_cols=46 Identities=37% Similarity=0.807 Sum_probs=39.6
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRA 476 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~ 476 (487)
..+...|.||++.+..++++||||.| |..|+..++...-.||.||.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~-c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNF-CRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred ccccccChhhHHHhhcCccccccchH-hHHHHHHhcCCCcCCcccCC
Confidence 34557999999999999999999999 99999998863337999994
No 151
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=3.3e-05 Score=76.65 Aligned_cols=49 Identities=29% Similarity=0.786 Sum_probs=44.7
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..+.+|+||+.....++.+||||.| |..|+.+...++..||.||.++.+
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~-c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSF-CLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccc-cHHHHHHHhccCCCCccccccccc
Confidence 4558999999999999999999999 999999988888899999998875
No 152
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.41 E-value=2.8e-05 Score=55.03 Aligned_cols=44 Identities=34% Similarity=0.788 Sum_probs=24.0
Q ss_pred ccccccccccCCceEE-cCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 433 TSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
...|.+|.+....+|. ..|.|.| |..|+..-.. ..||+|+.+..
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~f-Cs~Ci~~~~~--~~CPvC~~Paw 51 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIF-CSSCIRDCIG--SECPVCHTPAW 51 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B--TTTGGGGTT--TB-SSS--B-S
T ss_pred hcCCcHHHHHhcCCceeccCccHH-HHHHhHHhcC--CCCCCcCChHH
Confidence 3689999999999985 6999999 9999977433 25999998873
No 153
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=5.8e-05 Score=79.67 Aligned_cols=46 Identities=33% Similarity=0.770 Sum_probs=41.0
Q ss_pred cccccccccccCCc-----eEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660 432 ATSSCVICLDAPVE-----GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 432 ~~~~C~iC~~~~~~-----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
....|.||+|.... +..+||||.| |..|++.|.++...||.||..+
T Consensus 290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hif-h~~CL~~W~er~qtCP~CR~~~ 340 (543)
T KOG0802|consen 290 SDELCIICLEELHSGHNITPKRLPCGHIF-HDSCLRSWFERQQTCPTCRTVL 340 (543)
T ss_pred cCCeeeeechhhccccccccceeecccch-HHHHHHHHHHHhCcCCcchhhh
Confidence 34689999998888 6889999999 9999999999888999999944
No 154
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.36 E-value=0.00016 Score=54.83 Aligned_cols=46 Identities=26% Similarity=0.431 Sum_probs=33.9
Q ss_pred ccccccccccCC-------------ceEEcCCCCccchHhhHHHHhcc---CCcccccccccc
Q 040660 433 TSSCVICLDAPV-------------EGACVPCGHMAGCMSCLNEVKAK---KWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~-------------~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~ 479 (487)
+..|.||+..+. ..+.-.|+|.| ...|+.+|... +..||+||++..
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~F-H~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNF-HMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCceeeccCccHH-HHHHHHHHHccccCCCCCCCcCCeee
Confidence 346777765432 33445899999 99999999875 458999999764
No 155
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.33 E-value=0.00017 Score=67.91 Aligned_cols=52 Identities=33% Similarity=0.828 Sum_probs=42.7
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc--CCcccccccccccee
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANISQVI 482 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~~~ 482 (487)
.++...|.||-+...-...+||+|.. |--|+-++... .+.||+||..-..++
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~-CH~Ca~RlRALY~~K~C~~CrTE~e~V~ 111 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQI-CHACAVRLRALYMQKGCPLCRTETEAVV 111 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchH-HHHHHHHHHHHHhccCCCccccccceEE
Confidence 44557999999998888889999999 99999987543 558999998876553
No 156
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.28 E-value=0.00011 Score=71.36 Aligned_cols=51 Identities=29% Similarity=0.690 Sum_probs=41.8
Q ss_pred CcccccccccccCCceE-----E---cCCCCccchHhhHHHHh--cc-----CCcccccccccccee
Q 040660 431 DATSSCVICLDAPVEGA-----C---VPCGHMAGCMSCLNEVK--AK-----KWGCPVCRANISQVI 482 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~-----~---~pCgH~~~C~~C~~~~~--~~-----~~~CP~Cr~~i~~~~ 482 (487)
..+.+|.||++.....+ + .+|-|.| |..|+..|. .+ .+.||.||.....++
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~-Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~ 224 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSF-CLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN 224 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhh-hhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence 34579999999887776 5 6799999 999999998 44 458999999887654
No 157
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=97.27 E-value=9.6e-05 Score=50.61 Aligned_cols=43 Identities=33% Similarity=0.890 Sum_probs=36.3
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
..|..|.......+++||||.+ |..|-..... ..||+|.++|.
T Consensus 8 ~~~~~~~~~~~~~~~~pCgH~I-~~~~f~~~rY--ngCPfC~~~~~ 50 (55)
T PF14447_consen 8 QPCVFCGFVGTKGTVLPCGHLI-CDNCFPGERY--NGCPFCGTPFE 50 (55)
T ss_pred eeEEEcccccccccccccccee-eccccChhhc--cCCCCCCCccc
Confidence 5799999998888999999999 9999666543 36999999886
No 158
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.21 E-value=0.00018 Score=62.46 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=43.9
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI 482 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~ 482 (487)
.-...|.||..-...++...|||.| |..|+.+-.+....|-+|.+.....+
T Consensus 194 ~IPF~C~iCKkdy~spvvt~CGH~F-C~~Cai~~y~kg~~C~~Cgk~t~G~f 244 (259)
T COG5152 194 KIPFLCGICKKDYESPVVTECGHSF-CSLCAIRKYQKGDECGVCGKATYGRF 244 (259)
T ss_pred CCceeehhchhhccchhhhhcchhH-HHHHHHHHhccCCcceecchhhccce
Confidence 3457999999999999999999999 99999887777778999988765543
No 159
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.01 E-value=8.2e-05 Score=70.65 Aligned_cols=50 Identities=26% Similarity=0.591 Sum_probs=40.2
Q ss_pred CcccccccccccCCceEEc-CCCCccchHhhHHHHhcc-CCccccccccccce
Q 040660 431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAK-KWGCPVCRANISQV 481 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~ 481 (487)
.....|.||++.......+ -|+|+| |+.|+..-.+. ...||.||+.....
T Consensus 41 ~~~v~c~icl~llk~tmttkeClhrf-c~~ci~~a~r~gn~ecptcRk~l~Sk 92 (381)
T KOG0311|consen 41 DIQVICPICLSLLKKTMTTKECLHRF-CFDCIWKALRSGNNECPTCRKKLVSK 92 (381)
T ss_pred hhhhccHHHHHHHHhhcccHHHHHHH-HHHHHHHHHHhcCCCCchHHhhcccc
Confidence 3457999999988766654 799999 99999886554 55899999987643
No 160
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.94 E-value=0.0016 Score=64.83 Aligned_cols=65 Identities=23% Similarity=0.168 Sum_probs=52.9
Q ss_pred cHHHHHHHHHcCCCccccC----CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHH
Q 040660 53 LYDVAKTLIELGAKVDAYR----PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVAR 117 (487)
Q Consensus 53 ~~~~v~~Ll~~ga~~~~~~----~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~ 117 (487)
-.+.+++|.+++.+.|... .+..-.|+||||+..|..++|.+||+.|+|+..+|..|+||.+++.
T Consensus 403 ~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 403 EPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred chhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence 3567888888887765431 2455678999999999999999999999999999999999998877
No 161
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.00034 Score=65.01 Aligned_cols=49 Identities=24% Similarity=0.457 Sum_probs=43.8
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI 482 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~ 482 (487)
...|-||..-+.++|...|||.| |..|+..-.++...|.+|.+.+..++
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~f-c~~ca~~~~qk~~~c~vC~~~t~g~~ 289 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYF-CEVCALKPYQKGEKCYVCSQQTHGSF 289 (313)
T ss_pred CccccccccccccchhhcCCcee-ehhhhccccccCCcceeccccccccc
Confidence 36799999999999999999999 99999887777778999999887654
No 162
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.00073 Score=62.12 Aligned_cols=46 Identities=26% Similarity=0.858 Sum_probs=37.7
Q ss_pred ccccccccccCCceEEc-CCCCccchHhhHHHHhc--cCCcccccccccc
Q 040660 433 TSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKA--KKWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~--~~~~CP~Cr~~i~ 479 (487)
..+|++|-+.+..+... +|||.+ |+.|+..-.. .+-.||.|...+.
T Consensus 239 ~~~C~~Cg~~PtiP~~~~~C~Hiy-CY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 239 DTECPVCGEPPTIPHVIGKCGHIY-CYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred CceeeccCCCCCCCeeecccccee-ehhhhhhhhcchhhcccCccCCCCc
Confidence 36899999999999876 699999 9999887543 2347999988776
No 163
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.80 E-value=0.0022 Score=37.38 Aligned_cols=23 Identities=57% Similarity=0.700 Sum_probs=9.4
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcC
Q 040660 77 GTPLHHAAKRGLERTVKLLLSYG 99 (487)
Q Consensus 77 ~TpLh~Aa~~g~~~~v~~Ll~~g 99 (487)
.|+||+|+..++.+++++|++.|
T Consensus 3 ~~~l~~~~~~~~~~~~~~ll~~~ 25 (30)
T smart00248 3 RTPLHLAAENGNLEVVKLLLDKG 25 (30)
T ss_pred CCHHHHHHHcCCHHHHHHHHHcC
Confidence 34444444444444444444433
No 164
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.62 E-value=0.0011 Score=63.17 Aligned_cols=30 Identities=30% Similarity=0.832 Sum_probs=25.6
Q ss_pred CCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660 450 PCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ 480 (487)
Q Consensus 450 pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 480 (487)
+|||.| |..|+.+++.. ...||.|+..+..
T Consensus 25 ~CGH~~-C~sCv~~l~~~~~~~CP~C~~~lrk 55 (309)
T TIGR00570 25 VCGHTL-CESCVDLLFVRGSGSCPECDTPLRK 55 (309)
T ss_pred CCCCcc-cHHHHHHHhcCCCCCCCCCCCccch
Confidence 799999 99999998755 4479999998864
No 165
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=96.58 E-value=0.0039 Score=36.28 Aligned_cols=27 Identities=44% Similarity=0.697 Sum_probs=14.1
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCc
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKV 67 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~ 67 (487)
|.|+||+|+.. ++.++++.|++.+.++
T Consensus 2 ~~~~l~~~~~~-~~~~~~~~ll~~~~~~ 28 (30)
T smart00248 2 GRTPLHLAAEN-GNLEVVKLLLDKGADI 28 (30)
T ss_pred CCCHHHHHHHc-CCHHHHHHHHHcCCCC
Confidence 44555555555 5555555555554433
No 166
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.0011 Score=65.67 Aligned_cols=48 Identities=31% Similarity=0.638 Sum_probs=37.4
Q ss_pred CcccccccccccC-----------------CceEEcCCCCccchHhhHHHHhccC-Ccccccccccc
Q 040660 431 DATSSCVICLDAP-----------------VEGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~-----------------~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~ 479 (487)
.....|+|||... ++-.+.||.|.| ...|+.+|.... -.||+||.++.
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hif-H~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIF-HRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHH-HHHHHHHHHhhhcccCCccCCCCC
Confidence 3447899999622 234557999999 999999999854 48999999874
No 167
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=96.32 E-value=0.0075 Score=60.19 Aligned_cols=71 Identities=21% Similarity=0.190 Sum_probs=57.4
Q ss_pred HHHHHHHHHcCCCCCc------cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHH
Q 040660 20 VEGIKALCRDGAGLEW------IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVK 93 (487)
Q Consensus 20 ~~~v~~Ll~~g~~~~~------~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~ 93 (487)
...|++|.+++.+.|. .+..--|+||||+.. |..++|.+||+.|+|+.++ |..|.||..++. +.++-.
T Consensus 404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~q-g~~k~v~~~Leeg~Dp~~k--d~~Grtpy~ls~---nkdVk~ 477 (591)
T KOG2505|consen 404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQ-GARKCVKYFLEEGCDPSTK--DGAGRTPYSLSA---NKDVKS 477 (591)
T ss_pred hhHHHHHHhcCCcccccccccccccccchHHHHHHhc-chHHHHHHHHHhcCCchhc--ccCCCCcccccc---cHHHHH
Confidence 6778888888776543 344456999999999 9999999999999999998 999999999987 455544
Q ss_pred HHH
Q 040660 94 LLL 96 (487)
Q Consensus 94 ~Ll 96 (487)
.++
T Consensus 478 ~F~ 480 (591)
T KOG2505|consen 478 IFI 480 (591)
T ss_pred HHH
Confidence 444
No 168
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=96.18 E-value=0.0024 Score=61.30 Aligned_cols=45 Identities=33% Similarity=0.848 Sum_probs=38.0
Q ss_pred cccccccccccCCceEEcCC--CCccchHhhHHHHhccCCccccccccccce
Q 040660 432 ATSSCVICLDAPVEGACVPC--GHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pC--gH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
+-.+|+||++....+++ .| ||.. |..|-.++.. +||.||.+|..+
T Consensus 47 ~lleCPvC~~~l~~Pi~-QC~nGHla-CssC~~~~~~---~CP~Cr~~~g~~ 93 (299)
T KOG3002|consen 47 DLLDCPVCFNPLSPPIF-QCDNGHLA-CSSCRTKVSN---KCPTCRLPIGNI 93 (299)
T ss_pred hhccCchhhccCcccce-ecCCCcEe-hhhhhhhhcc---cCCccccccccH
Confidence 44789999999988876 56 7999 9999987766 799999999854
No 169
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.05 E-value=0.0024 Score=64.40 Aligned_cols=50 Identities=34% Similarity=0.758 Sum_probs=44.2
Q ss_pred CcccccccccccCCceEE-cCCCCccchHhhHHHHhccCCccccccccccce
Q 040660 431 DATSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
++...|.+|+....+++. +.|||.| |..|+..+.+....||.|+..+...
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~f-C~~C~~~~~~~~~~cp~~~~~~~~~ 69 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRF-CAGCLLESLSNHQKCPVCRQELTQA 69 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcc-cccccchhhccCcCCcccccccchh
Confidence 455789999999999998 4999999 9999999998888999999887654
No 170
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=95.99 E-value=0.0045 Score=41.59 Aligned_cols=42 Identities=24% Similarity=0.670 Sum_probs=20.4
Q ss_pred cccccccC--CceEEc--CCCCccchHhhHHHHhc-cCCccccccccc
Q 040660 436 CVICLDAP--VEGACV--PCGHMAGCMSCLNEVKA-KKWGCPVCRANI 478 (487)
Q Consensus 436 C~iC~~~~--~~~~~~--pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i 478 (487)
|++|.+.. .+..+. +||+.+ |..|-.++.. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~I-C~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQI-CRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcH-HHHHHHHHHhccCCCCCCCCCCC
Confidence 55666544 222333 678888 9999999986 477999999874
No 171
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=95.94 E-value=0.0019 Score=67.35 Aligned_cols=50 Identities=24% Similarity=0.423 Sum_probs=40.8
Q ss_pred cccccccccCCceEE---cCCCCccchHhhHHHHhccCCccccccccccceeEe
Q 040660 434 SSCVICLDAPVEGAC---VPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRL 484 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~ 484 (487)
..|.+|+....+... .+|+|.| |..|+..|.+....||+||..+.+++.+
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~F-C~~Ci~sWsR~aqTCPiDR~EF~~v~V~ 176 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYF-CEECVGSWSRCAQTCPVDRGEFGEVKVL 176 (1134)
T ss_pred hhhhHHHHHHHHHhhcccccccccc-HHHHhhhhhhhcccCchhhhhhheeeee
Confidence 579999876544433 5999999 9999999998877899999999877644
No 172
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=95.86 E-value=0.0079 Score=51.01 Aligned_cols=51 Identities=29% Similarity=0.842 Sum_probs=36.8
Q ss_pred cccccccccCCceEEcCCC-Cccch-----------HhhHHHHhcc-------------------------------CCc
Q 040660 434 SSCVICLDAPVEGACVPCG-HMAGC-----------MSCLNEVKAK-------------------------------KWG 470 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCg-H~~~C-----------~~C~~~~~~~-------------------------------~~~ 470 (487)
..|+||||.|-++|+|-|- |.-.| ..|+.+.++. +..
T Consensus 3 ~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 82 (162)
T PF07800_consen 3 VTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPELA 82 (162)
T ss_pred ccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccccccc
Confidence 4799999999999998765 33323 4577766431 225
Q ss_pred cccccccccceeEe
Q 040660 471 CPVCRANISQVIRL 484 (487)
Q Consensus 471 CP~Cr~~i~~~~~~ 484 (487)
||+||..|...+.+
T Consensus 83 CPLCRG~V~GWtvv 96 (162)
T PF07800_consen 83 CPLCRGEVKGWTVV 96 (162)
T ss_pred CccccCceeceEEc
Confidence 99999999877654
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.81 E-value=0.0049 Score=58.20 Aligned_cols=48 Identities=27% Similarity=0.711 Sum_probs=36.1
Q ss_pred CcccccccccccC----CceEEcCCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660 431 DATSSCVICLDAP----VEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
+++..|+.|++.. .+..--|||..+ |..|...++.. .+.||.||+..+
T Consensus 12 deed~cplcie~mditdknf~pc~cgy~i-c~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 12 DEEDYCPLCIEPMDITDKNFFPCPCGYQI-CQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred cccccCcccccccccccCCcccCCcccHH-HHHHHHHHHhhccCCChHhhhhcc
Confidence 4445699999854 222224788888 99999998775 668999999875
No 174
>PF04641 Rtf2: Rtf2 RING-finger
Probab=95.73 E-value=0.011 Score=56.38 Aligned_cols=52 Identities=27% Similarity=0.443 Sum_probs=40.4
Q ss_pred CcccccccccccC----CceEEcCCCCccchHhhHHHHhccCCccccccccccc--eeEe
Q 040660 431 DATSSCVICLDAP----VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ--VIRL 484 (487)
Q Consensus 431 ~~~~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~--~~~~ 484 (487)
.....|+|+.... .-+++.||||.| +..++..+. ....||+|-.++.. +|.|
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~-s~~alke~k-~~~~Cp~c~~~f~~~DiI~L 168 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVF-SEKALKELK-KSKKCPVCGKPFTEEDIIPL 168 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEe-eHHHHHhhc-ccccccccCCccccCCEEEe
Confidence 4558999998655 344456999999 999999996 45579999999873 5554
No 175
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.0065 Score=55.73 Aligned_cols=46 Identities=22% Similarity=0.475 Sum_probs=35.9
Q ss_pred ccccccccccCCc----------eEEcCCCCccchHhhHHHHhcc--CCcccccccccc
Q 040660 433 TSSCVICLDAPVE----------GACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~----------~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 479 (487)
...|.||-...-. ..-+.|+|.| ...|++-|..- +..||.|++.|+
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvF-HEfCIrGWcivGKkqtCPYCKekVd 281 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVF-HEFCIRGWCIVGKKQTCPYCKEKVD 281 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccch-HHHhhhhheeecCCCCCchHHHHhh
Confidence 3589999765432 3347999999 99999999764 457999998875
No 176
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.47 E-value=0.068 Score=48.26 Aligned_cols=115 Identities=16% Similarity=0.070 Sum_probs=80.4
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC----CCccccCCCCCCCcHHHHHHH
Q 040660 10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG----AKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 10 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g----a~~~~~~~d~~g~TpLh~Aa~ 85 (487)
.|--|+..-+++.+..++...- +-.++|-++..+ +..+++-+|+..- .|+-. -..+..-+-|+..
T Consensus 156 sledAV~AsN~~~i~~~VtdKk-------dA~~Am~~si~~-~K~dva~~lls~f~ft~~dv~~---~~~~~ydieY~LS 224 (284)
T PF06128_consen 156 SLEDAVKASNYEEISNLVTDKK-------DAHQAMWLSIGN-AKEDVALYLLSKFNFTKQDVAS---MEKELYDIEYLLS 224 (284)
T ss_pred cHHHHHhhcCHHHHHHHhcchH-------HHHHHHHHHhcc-cHHHHHHHHHhhcceecchhhh---cCcchhhHHHHHh
Confidence 3556777777777666654321 235788888887 8888888888651 22222 1224445566554
Q ss_pred h--CCHHHHHHHHHcC-CCccc---ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Q 040660 86 R--GLERTVKLLLSYG-ANALV---LNDDCQTPLEVARAKGFTNVVRAIENHICIF 135 (487)
Q Consensus 86 ~--g~~~~v~~Ll~~g-a~~~~---~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~ 135 (487)
. .+..+++.+|++| +++|. +-+.|.|.|.-|..+++.+++.+|+++||-.
T Consensus 225 ~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 225 EHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred hcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence 3 3567899999999 67765 4568999999999999999999999999853
No 177
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=0.0099 Score=53.81 Aligned_cols=48 Identities=19% Similarity=0.341 Sum_probs=40.9
Q ss_pred cccccccccccCCce----EEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 432 ATSSCVICLDAPVEG----ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~----~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
....|+||.+...+. ++-||||.+ |++|.+++......||+|-.+...
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv-~~ecvEklir~D~v~pv~d~plkd 271 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVV-TKECVEKLIRKDMVDPVTDKPLKD 271 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEe-eHHHHHHhccccccccCCCCcCcc
Confidence 458999999977654 346999999 999999999888899999998863
No 178
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=95.40 E-value=0.013 Score=40.04 Aligned_cols=40 Identities=25% Similarity=0.618 Sum_probs=31.4
Q ss_pred ccccccc--cCCceEEcCCC-----CccchHhhHHHHhccC--Ccccccc
Q 040660 435 SCVICLD--APVEGACVPCG-----HMAGCMSCLNEVKAKK--WGCPVCR 475 (487)
Q Consensus 435 ~C~iC~~--~~~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr 475 (487)
.|.||++ ...++...||. |.+ -..|+.+|...+ ..||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~v-H~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYV-HQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHH-HHHHHHHHHHHcCCCcCCCCC
Confidence 3889996 55677778996 556 999999998654 3799995
No 179
>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC. The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].
Probab=95.40 E-value=0.12 Score=46.74 Aligned_cols=116 Identities=15% Similarity=0.048 Sum_probs=72.0
Q ss_pred HHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc----CCCCCHHHHHHH-
Q 040660 44 LIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN----DDCQTPLEVARA- 118 (487)
Q Consensus 44 L~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d----~~g~TpL~~A~~- 118 (487)
|--|+.. .+++-+.-++... ..-.++|-+|...+..+++-+|+..- +....| ..+.--+.++..
T Consensus 157 ledAV~A-sN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~ 225 (284)
T PF06128_consen 157 LEDAVKA-SNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSE 225 (284)
T ss_pred HHHHHhh-cCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhh
Confidence 4456666 6666666665432 23446788888777788888887631 111111 112223444443
Q ss_pred -cCCHHHHHHHHhCC-Cccccc-ccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660 119 -KGFTNVVRAIENHI-CIFSGW-LRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 119 -~g~~~~v~~Ll~~g-a~~~~~-~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~ 171 (487)
.....++++.+++| ++++.. .+-..|.|.|. -|...++.|++.+|+.+|+..
T Consensus 226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLD-NA~Ky~~~emi~~Llk~GA~~ 280 (284)
T PF06128_consen 226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLD-NAMKYKNSEMIAFLLKYGAIS 280 (284)
T ss_pred cCCcHHHHHHHHhccccccchhhhccCCcchHHH-hHHhcCcHHHHHHHHHcCccc
Confidence 23567888888888 444432 33367888888 888888888888888888854
No 180
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=95.24 E-value=0.014 Score=38.50 Aligned_cols=47 Identities=23% Similarity=0.549 Sum_probs=27.2
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI 482 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~ 482 (487)
.-|.-|+-....- +.|.--+.|..|+..|...+..||+|..++...+
T Consensus 3 ~nCKsCWf~~k~L--i~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtki 49 (50)
T PF03854_consen 3 YNCKSCWFANKGL--IKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTKI 49 (50)
T ss_dssp ----SS-S--SSE--EE-SS-EEEHHHHHHT-SSSSEETTTTEE----S
T ss_pred ccChhhhhcCCCe--eeecchhHHHHHHHHHhccccCCCcccCcCcccc
Confidence 4688898776654 5688444599999999999889999999876544
No 181
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.011 Score=56.07 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=41.7
Q ss_pred ccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccc--cceeEee
Q 040660 433 TSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANI--SQVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i--~~~~~~y 485 (487)
...|+||+....++..+ --|..| |+.|+-....+.+.||+-..++ +..+|+|
T Consensus 300 ~~~CpvClk~r~Nptvl~vSGyVf-CY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 300 REVCPVCLKKRQNPTVLEVSGYVF-CYPCIFSYVVNYGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred cccChhHHhccCCCceEEecceEE-eHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence 35899999988777654 459988 9999999888888999976665 4677776
No 182
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.11 E-value=0.013 Score=57.92 Aligned_cols=42 Identities=31% Similarity=0.668 Sum_probs=33.2
Q ss_pred cccccccccCCceE----EcCCCCccchHhhHHHHhccCCccccccccc
Q 040660 434 SSCVICLDAPVEGA----CVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 434 ~~C~iC~~~~~~~~----~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
..|+||+|+.-.-+ -+.|.|.| --.|+.+|+.. .||+||-.-
T Consensus 176 PTCpVCLERMD~s~~gi~t~~c~Hsf-h~~cl~~w~~~--scpvcR~~q 221 (493)
T KOG0804|consen 176 PTCPVCLERMDSSTTGILTILCNHSF-HCSCLMKWWDS--SCPVCRYCQ 221 (493)
T ss_pred CCcchhHhhcCccccceeeeeccccc-chHHHhhcccC--cChhhhhhc
Confidence 47999999874433 36999999 88899999875 599998543
No 183
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.06 E-value=0.012 Score=48.13 Aligned_cols=46 Identities=26% Similarity=0.615 Sum_probs=39.2
Q ss_pred cccccccccCCceEEc----CCCCccchHhhHHHHhcc---CCccccccccccc
Q 040660 434 SSCVICLDAPVEGACV----PCGHMAGCMSCLNEVKAK---KWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~----pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~~ 480 (487)
.+|.||.|...+.-|+ =||-.. |..|-..+|+. .+.||+|+..+..
T Consensus 81 YeCnIC~etS~ee~FLKPneCCgY~i-Cn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 81 YECNICKETSAEERFLKPNECCGYSI-CNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred eeccCcccccchhhcCCcccccchHH-HHHHHHHHHHHcccCCCCCcccccccc
Confidence 7999999998888886 599888 99998887764 6689999998864
No 184
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=94.99 E-value=0.0056 Score=58.18 Aligned_cols=53 Identities=23% Similarity=0.503 Sum_probs=44.3
Q ss_pred ccccccccccCCceEE-cCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 433 TSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
...|.+|..-..++.. .-|-|.| |..|+.+.......||.|...|.+...+.+
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTF-CkSCivk~l~~~~~CP~C~i~ih~t~pl~n 68 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTF-CKSCIVKYLEESKYCPTCDIVIHKTHPLLN 68 (331)
T ss_pred ceehhhccceeecchhHHHHHHHH-HHHHHHHHHHHhccCCccceeccCcccccc
Confidence 3689999998888775 4799999 999999988777899999999988765443
No 185
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=0.18 Score=46.88 Aligned_cols=30 Identities=27% Similarity=0.678 Sum_probs=27.2
Q ss_pred cccccccccCCceEEcCCC----CccchHhhHHHH
Q 040660 434 SSCVICLDAPVEGACVPCG----HMAGCMSCLNEV 464 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~ 464 (487)
..|.+|.|+..+..|+.|- |.| |+.|.+.-
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKF-CFPCSRes 302 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKF-CFPCSRES 302 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccce-ecccCHHH
Confidence 5899999999999999995 999 99998774
No 186
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=94.81 E-value=0.024 Score=53.09 Aligned_cols=45 Identities=27% Similarity=0.747 Sum_probs=30.5
Q ss_pred ccccccccccCCceE--EcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660 433 TSSCVICLDAPVEGA--CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~--~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
..-|.-| |.+.... ++||.|.| |.+|+..-.. +.||.|-..|.++
T Consensus 90 VHfCd~C-d~PI~IYGRmIPCkHvF-Cl~CAr~~~d--K~Cp~C~d~VqrI 136 (389)
T KOG2932|consen 90 VHFCDRC-DFPIAIYGRMIPCKHVF-CLECARSDSD--KICPLCDDRVQRI 136 (389)
T ss_pred eEeeccc-CCcceeeecccccchhh-hhhhhhcCcc--ccCcCcccHHHHH
Confidence 3456666 4433322 47999999 9999877542 3699998777544
No 187
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.78 E-value=0.013 Score=62.87 Aligned_cols=44 Identities=32% Similarity=0.690 Sum_probs=38.0
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhcc--CCcccccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 479 (487)
..|.+|++ ...++.++|||.+ |.+|....... ...||+||..+.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~-c~~c~~~~i~~~~~~~~~~cr~~l~ 500 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDF-CVECLKKSIQQSENAPCPLCRNVLK 500 (674)
T ss_pred cccccccc-cccceeecccchH-HHHHHHhccccccCCCCcHHHHHHH
Confidence 68999999 8888899999999 99999987654 336999998875
No 188
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=94.74 E-value=0.011 Score=59.11 Aligned_cols=48 Identities=27% Similarity=0.636 Sum_probs=39.2
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhc-----cCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-----KKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-----~~~~CP~Cr~~i~ 479 (487)
.+..+|.+|-|...+.+...|.|.| |..|+..... ....||.|.....
T Consensus 534 k~~~~C~lc~d~aed~i~s~ChH~F-CrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 534 KGEVECGLCHDPAEDYIESSCHHKF-CRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred cCceeecccCChhhhhHhhhhhHHH-HHHHHHHHHHhhhcccCCCCcccccccc
Confidence 4457999999999999999999999 9999977543 2347999987653
No 189
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=94.09 E-value=0.044 Score=38.70 Aligned_cols=40 Identities=23% Similarity=0.374 Sum_probs=28.7
Q ss_pred ccccccccccCCceEE-cCCCCccchHhhHHHHhcc--CCcccc
Q 040660 433 TSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAK--KWGCPV 473 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~--~~~CP~ 473 (487)
...|+|.+..+.++|. ..|||.| ..+.+..+... ...||+
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~f-ek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTF-EKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EE-EHHHHHHHCTTTS-EE-SC
T ss_pred ccCCCCcCChhhCCcCcCCCCCee-cHHHHHHHHHhcCCCCCCC
Confidence 3689999999999987 5999999 99999998843 447998
No 190
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.80 E-value=0.028 Score=60.28 Aligned_cols=49 Identities=27% Similarity=0.642 Sum_probs=36.8
Q ss_pred CcccccccccccC-------CceEEcCCCCccchHhhHHHHhcc--CCccccccccccc
Q 040660 431 DATSSCVICLDAP-------VEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~-------~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~~ 480 (487)
+...+|.||+... ..-.+-.|.|-| ...|+-+|-.. +..||+||..|+.
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKF-H~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKF-HTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhh-hHHHHHHHHHhcCCCCCCcccccccc
Confidence 3457999999632 233345799999 99999999876 3479999988763
No 191
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=93.76 E-value=0.23 Score=43.59 Aligned_cols=138 Identities=20% Similarity=0.114 Sum_probs=88.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660 9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL 88 (487)
Q Consensus 9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~ 88 (487)
=.|..|+..+.+.+++.+-+...+- -...++..-.||+. .+.|+|+|+- -++... +-.+-+-.|....+
T Consensus 48 CLl~HAVk~nmL~ILqkyke~L~~~---~~~~q~LFElAC~~-qkydiV~WI~---qnL~i~----~~~~iFdIA~~~kD 116 (192)
T PF03158_consen 48 CLLYHAVKYNMLSILQKYKEDLENE---RYLNQELFELACEE-QKYDIVKWIG---QNLHIY----NPEDIFDIAFAKKD 116 (192)
T ss_pred HHHHHHHHcCcHHHHHHHHHHhhcc---hhHHHHHHHHHHHH-ccccHHHHHh---hccCCC----Cchhhhhhhhhccc
Confidence 3567788999999988876653221 13456778899999 8899999993 333332 22345666777766
Q ss_pred HHHH----HHHHHcCCCcccccC--CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 89 ERTV----KLLLSYGANALVLND--DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 89 ~~~v----~~Ll~~ga~~~~~d~--~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
.++. .+++++...-.-.|. --..-|.+|+..|-...|.-.+++|.+++ . ++|. .|+..++.+++.
T Consensus 117 lsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~a~~kgll~F~letlkygg~~~--~------~vls-~Av~ynhRkIL~ 187 (192)
T PF03158_consen 117 LSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEKAAAKGLLPFVLETLKYGGNVD--I------IVLS-QAVKYNHRKILD 187 (192)
T ss_pred hhHHHHHHHHHHhhcccccccCHHHHHHHHHHHHHHCCCHHHHHHHHHcCCccc--H------HHHH-HHHHhhHHHHHH
Confidence 6542 223333211100000 01134678888888888888888888876 2 6777 788888888888
Q ss_pred Hhhc
Q 040660 163 AVLP 166 (487)
Q Consensus 163 ~Ll~ 166 (487)
+++.
T Consensus 188 yfi~ 191 (192)
T PF03158_consen 188 YFIR 191 (192)
T ss_pred Hhhc
Confidence 7764
No 192
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=93.67 E-value=0.02 Score=42.49 Aligned_cols=45 Identities=31% Similarity=0.634 Sum_probs=22.1
Q ss_pred cccccccccCC------ceEEc--CCCCccchHhhHHHHhcc-----------CCcccccccccc
Q 040660 434 SSCVICLDAPV------EGACV--PCGHMAGCMSCLNEVKAK-----------KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~------~~~~~--pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~ 479 (487)
.+|.||++..- +.+.- .|++.| ...|+..|... .+.||.|+.+|.
T Consensus 3 ~~C~IC~~~~~~~~~~p~~~C~n~~C~~~f-H~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 3 LECGICYSYRLDDGEIPDVVCPNPSCGKKF-HLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp -S-SSS--SS-TT-----B--S-TT----B--SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCcCCcEecCCCCcCceEcCCcccCCHH-HHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 57999997543 12222 788888 99999999542 125999999885
No 193
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.66 E-value=0.058 Score=39.91 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCCCccchHhhHHHHhccCCcccccccccc
Q 040660 450 PCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 450 pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
-|.|.| -.-|+.+|...+..||+||+...
T Consensus 53 ~CnHaF-H~HCI~rWL~Tk~~CPld~q~w~ 81 (88)
T COG5194 53 VCNHAF-HDHCIYRWLDTKGVCPLDRQTWV 81 (88)
T ss_pred ecchHH-HHHHHHHHHhhCCCCCCCCceeE
Confidence 699999 99999999998889999998754
No 194
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.63 E-value=0.036 Score=54.23 Aligned_cols=31 Identities=32% Similarity=0.850 Sum_probs=26.0
Q ss_pred ccccccccccCCc---eEEcCCCCccchHhhHHHH
Q 040660 433 TSSCVICLDAPVE---GACVPCGHMAGCMSCLNEV 464 (487)
Q Consensus 433 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~ 464 (487)
...|.||++...- ..++||+|.| |..|+...
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~-Ck~C~kdY 217 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVF-CKSCLKDY 217 (445)
T ss_pred cccceeeehhhcCcceeeecccchHH-HHHHHHHH
Confidence 4789999997754 5678999999 99998874
No 195
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=92.70 E-value=0.082 Score=43.92 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=27.5
Q ss_pred ccccccccccCCc---eEEcCCC------CccchHhhHHHHhcc
Q 040660 433 TSSCVICLDAPVE---GACVPCG------HMAGCMSCLNEVKAK 467 (487)
Q Consensus 433 ~~~C~iC~~~~~~---~~~~pCg------H~~~C~~C~~~~~~~ 467 (487)
..+|.||+++..+ ++.++|| |+| |..|.++|.+.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmf-c~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMF-CADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHH-HHHHHHHHHhh
Confidence 3689999998766 5567898 777 99999999543
No 196
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=91.87 E-value=0.16 Score=47.97 Aligned_cols=52 Identities=6% Similarity=-0.127 Sum_probs=42.5
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEe
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRL 484 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~ 484 (487)
....+|.+|-+.....+..+|+|+..|.+|+. ..-.+.||+|..-+...++|
T Consensus 341 ~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~~~~~~i 392 (394)
T KOG2113|consen 341 MSSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHNDHTLVPI 392 (394)
T ss_pred hhhcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccceeeeec
Confidence 45579999999999999999999999999998 33456899997765555555
No 197
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=91.81 E-value=0.09 Score=58.88 Aligned_cols=50 Identities=28% Similarity=0.874 Sum_probs=38.3
Q ss_pred CcccccccccccC---CceEEcCCCCccchHhhHHHHhccCC----------ccccccccccce
Q 040660 431 DATSSCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKW----------GCPVCRANISQV 481 (487)
Q Consensus 431 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~----------~CP~Cr~~i~~~ 481 (487)
+.+..|+||+... ...+.+-|+|+| ...|.+++..+++ .||+|..+|..+
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiF-HlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIF-HLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccch-hHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 3346899999644 344568999999 9999999876543 499999998743
No 198
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=91.69 E-value=0.059 Score=48.66 Aligned_cols=46 Identities=24% Similarity=0.609 Sum_probs=33.7
Q ss_pred cccccccccc-cC--CceEEc--C-CCCccchHhhHHHHhccCC-ccc--cccccc
Q 040660 432 ATSSCVICLD-AP--VEGACV--P-CGHMAGCMSCLNEVKAKKW-GCP--VCRANI 478 (487)
Q Consensus 432 ~~~~C~iC~~-~~--~~~~~~--p-CgH~~~C~~C~~~~~~~~~-~CP--~Cr~~i 478 (487)
....|+||.. +. .+..++ | |-|.. |..|..++....+ .|| .|.+-.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrm-CESCvdRIFs~GpAqCP~~gC~kIL 63 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRM-CESCVDRIFSRGPAQCPYKGCGKIL 63 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHH-HHHHHHHHhcCCCCCCCCccHHHHH
Confidence 3468999984 22 344443 6 99999 9999999987755 799 886543
No 199
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=91.01 E-value=0.24 Score=48.84 Aligned_cols=28 Identities=39% Similarity=0.905 Sum_probs=20.2
Q ss_pred CCCccchHhhHHHHhc-------------cCCcccccccccc
Q 040660 451 CGHMAGCMSCLNEVKA-------------KKWGCPVCRANIS 479 (487)
Q Consensus 451 CgH~~~C~~C~~~~~~-------------~~~~CP~Cr~~i~ 479 (487)
|+-+. |.+|+-+|.. .+..||.||+.++
T Consensus 311 CRPmW-C~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC 351 (358)
T PF10272_consen 311 CRPMW-CLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC 351 (358)
T ss_pred ccchH-HHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence 33444 9999998832 2447999999876
No 200
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=90.95 E-value=0.067 Score=52.33 Aligned_cols=53 Identities=25% Similarity=0.570 Sum_probs=0.0
Q ss_pred ccccccccc-------------------cCCceEEcCCCCccchHhhHHHHhcc---------CCccccccccccc---e
Q 040660 433 TSSCVICLD-------------------APVEGACVPCGHMAGCMSCLNEVKAK---------KWGCPVCRANISQ---V 481 (487)
Q Consensus 433 ~~~C~iC~~-------------------~~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~~---~ 481 (487)
..+|++|+. .+.+.+|.||||++ =...++-|.+- ...||.|-.++.. +
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~-SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g~~g~ 406 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVC-SEKTAKYWSQIPLPHGTHAFHAACPFCATPLDGEQGY 406 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeeccccccc-chhhhhhhhcCCCCCCcccccccCCcccCcccCCCCc
Confidence 579999985 23455678999997 77777777542 2369999999973 6
Q ss_pred eEeee
Q 040660 482 IRLYA 486 (487)
Q Consensus 482 ~~~y~ 486 (487)
+|+++
T Consensus 407 vrLiF 411 (416)
T PF04710_consen 407 VRLIF 411 (416)
T ss_dssp -----
T ss_pred eEEEE
Confidence 77765
No 201
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=90.61 E-value=0.13 Score=48.06 Aligned_cols=42 Identities=24% Similarity=0.604 Sum_probs=34.8
Q ss_pred cccccccccCCceEEc-CCCCccchHhhHHHHhc-cCCccccccc
Q 040660 434 SSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKA-KKWGCPVCRA 476 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~-~~~~CP~Cr~ 476 (487)
..|+.|....++++-+ -|+|.| |.+|+...+. ...+||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~f-c~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTF-CDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchH-HHHHHhhhhhhccccCCCccc
Confidence 6899999988888877 578999 9999997544 3458999976
No 202
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=89.23 E-value=0.85 Score=34.34 Aligned_cols=48 Identities=23% Similarity=0.113 Sum_probs=31.6
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL 63 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ 63 (487)
...|..|+..|+.|+++.+++.+ .++ ...|..|+.. .+.+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~-H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKS-HNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHH-hhHHHHHHHHHh
Confidence 34567777777777777777654 221 3457777777 777777777765
No 203
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=88.59 E-value=0.54 Score=44.47 Aligned_cols=47 Identities=23% Similarity=0.576 Sum_probs=30.9
Q ss_pred ccccccccccc-------------------CCceEEcCCCCccchHhhHHHHhcc---------CCcccccccccc
Q 040660 432 ATSSCVICLDA-------------------PVEGACVPCGHMAGCMSCLNEVKAK---------KWGCPVCRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~-------------------~~~~~~~pCgH~~~C~~C~~~~~~~---------~~~CP~Cr~~i~ 479 (487)
.+.+|++|+.. +.+-.|-||||++ -..=..-|.+- ...||+|-..+.
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~-sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVC-SEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCccccc-chhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 45799999863 2334457999985 44444445431 336999988875
No 204
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=88.55 E-value=0.24 Score=38.65 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=25.0
Q ss_pred CCCCccchHhhHHHHhccCCcccccccc
Q 040660 450 PCGHMAGCMSCLNEVKAKKWGCPVCRAN 477 (487)
Q Consensus 450 pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 477 (487)
-|.|.| -+-|+.+|.+.+..||+|.+.
T Consensus 80 ~CNHaF-H~hCisrWlktr~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAF-HFHCISRWLKTRNVCPLDNKE 106 (114)
T ss_pred ecchHH-HHHHHHHHHhhcCcCCCcCcc
Confidence 799999 999999999999999999775
No 205
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.68 E-value=0.39 Score=47.15 Aligned_cols=53 Identities=21% Similarity=0.452 Sum_probs=38.5
Q ss_pred cccccccccc---CCceEEcCCCCccchHhhHHHHhccC---Ccccccccccc--ceeEeee
Q 040660 433 TSSCVICLDA---PVEGACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS--QVIRLYA 486 (487)
Q Consensus 433 ~~~C~iC~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~--~~~~~y~ 486 (487)
...|+|=.+. .-.|+.+.|||.. |..-+.++.+.. -+||+|-.... ...+||+
T Consensus 334 vF~CPVlKeqtsdeNPPm~L~CGHVI-SkdAlnrLS~ng~~sfKCPYCP~e~~~~~~kql~F 394 (394)
T KOG2817|consen 334 VFICPVLKEQTSDENPPMMLICGHVI-SKDALNRLSKNGSQSFKCPYCPVEQLASDTKQLYF 394 (394)
T ss_pred eeecccchhhccCCCCCeeeecccee-cHHHHHHHhhCCCeeeeCCCCCcccCHHhcccccC
Confidence 3688884431 2346678999999 999999998763 38999976653 5667764
No 206
>PHA02862 5L protein; Provisional
Probab=86.50 E-value=0.67 Score=38.83 Aligned_cols=45 Identities=24% Similarity=0.441 Sum_probs=34.4
Q ss_pred cccccccccCCceEEcCCCC----ccchHhhHHHHhcc--CCcccccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGH----MAGCMSCLNEVKAK--KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH----~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 479 (487)
..|-||++...+. .-||.. .++..+|+.+|... +..|++|+.+..
T Consensus 3 diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 3 DICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 4799999986554 478885 34589999999865 337999998764
No 207
>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].
Probab=86.44 E-value=1.2 Score=33.57 Aligned_cols=46 Identities=15% Similarity=0.054 Sum_probs=22.5
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC
Q 040660 79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 131 (487)
-|.+|+..|+.|+++.+++.+ .++ ...|..|+...+.+++++|++.
T Consensus 9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence 345555555555555555432 111 2345555555555555555543
No 208
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=86.30 E-value=0.69 Score=39.58 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=34.8
Q ss_pred cccccccccccCCceEEcCCCCc----cchHhhHHHHhccC--Ccccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHM----AGCMSCLNEVKAKK--WGCPVCRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~~--~~CP~Cr~~i~ 479 (487)
.+..|-||++.... ...||... ++..+|+++|...+ ..|++|+.+..
T Consensus 7 ~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~ 59 (162)
T PHA02825 7 MDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN 59 (162)
T ss_pred CCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence 34689999988653 34688752 34889999998763 37999998774
No 209
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=0.31 Score=35.81 Aligned_cols=29 Identities=24% Similarity=0.512 Sum_probs=23.7
Q ss_pred CCCCccchHhhHHHHhcc---CCcccccccccc
Q 040660 450 PCGHMAGCMSCLNEVKAK---KWGCPVCRANIS 479 (487)
Q Consensus 450 pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~ 479 (487)
-|.|.| -.-|+.+|... ...||+||+...
T Consensus 50 ~C~h~f-h~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAF-HAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHH-HHHHHHHHhcCccccccCCcchheeE
Confidence 699999 99999998754 347999998653
No 210
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=84.00 E-value=0.41 Score=38.68 Aligned_cols=31 Identities=26% Similarity=0.745 Sum_probs=24.1
Q ss_pred cccccccccccCCceEE--cCCCCccchHhhHHH
Q 040660 432 ATSSCVICLDAPVEGAC--VPCGHMAGCMSCLNE 463 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~--~pCgH~~~C~~C~~~ 463 (487)
+...|.+|.....+.+| .||||.+ .+.|+.+
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~-H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVV-HYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEE-ecccccC
Confidence 34579999988766554 5999999 9999753
No 211
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.43 E-value=0.38 Score=46.87 Aligned_cols=46 Identities=28% Similarity=0.658 Sum_probs=35.0
Q ss_pred cccccccccc----CCceEEcCCCCccchHhhHHHHhccC--Ccccccccccc
Q 040660 433 TSSCVICLDA----PVEGACVPCGHMAGCMSCLNEVKAKK--WGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~----~~~~~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 479 (487)
..-|..|-+. +.+---+||.|.| ...|+..+..++ ..||-||+-+.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIf-H~rCl~e~L~~n~~rsCP~CrklrS 416 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIF-HLRCLQEILENNGTRSCPNCRKLRS 416 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHH-HHHHHHHHHHhCCCCCCccHHHHHh
Confidence 3579999874 3444458999999 999999987653 37999996554
No 212
>PHA03096 p28-like protein; Provisional
Probab=83.24 E-value=0.68 Score=44.37 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=31.0
Q ss_pred cccccccccCCc--------eEEcCCCCccchHhhHHHHhcc------CCccccccccc
Q 040660 434 SSCVICLDAPVE--------GACVPCGHMAGCMSCLNEVKAK------KWGCPVCRANI 478 (487)
Q Consensus 434 ~~C~iC~~~~~~--------~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i 478 (487)
..|.||++.... ..+-.|-|.| |..|+..|... .+.||.|+..+
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~f-c~~ci~~wr~~~~~~e~~~~c~~~~~~~ 236 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEF-NIFCIKIWMTESLYKETEPENRRLNTVI 236 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHH-HHHHHHHHHHhhhhcccCccccchhhHH
Confidence 479999986532 3345899999 99999998764 22466665544
No 213
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=83.19 E-value=0.29 Score=46.26 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=40.0
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhcc-CCcccccccccccee
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVI 482 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~ 482 (487)
..|.+|++.......++|+|.++|..|+...+.+ ...|++|...+.+..
T Consensus 137 i~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ra~ 186 (394)
T KOG2113|consen 137 IKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVTRAG 186 (394)
T ss_pred cchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhhhhh
Confidence 6899999999999999999999999998887554 335999976655443
No 214
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=81.11 E-value=0.95 Score=44.03 Aligned_cols=33 Identities=27% Similarity=0.737 Sum_probs=26.8
Q ss_pred ceEEcCCCCccchHhhHHHHhccC-Cccccccccc
Q 040660 445 EGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANI 478 (487)
Q Consensus 445 ~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i 478 (487)
.+..+.|||.+ |..|+..+.... ..||.||.+.
T Consensus 21 ~p~~l~c~h~~-c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 21 IPRVLKCGHTI-CQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CCcccccCcee-hHhHHHHHhcCceeeccCCCCcc
Confidence 34446699999 999999998764 3799999984
No 215
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=79.30 E-value=0.87 Score=49.00 Aligned_cols=48 Identities=23% Similarity=0.639 Sum_probs=35.7
Q ss_pred CcccccccccccCCceEE----cCCCCccchHhhHHHHhcc-------CCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGAC----VPCGHMAGCMSCLNEVKAK-------KWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~----~pCgH~~~C~~C~~~~~~~-------~~~CP~Cr~~i~ 479 (487)
....+|.||+++.....- -.|-|+| -..|++.|.++ .|.||.|+..-.
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVF-Hl~CI~~WArs~ek~~~~~WrCP~Cqsv~~ 247 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVF-HLNCIKKWARSSEKTGQDGWRCPACQSVSK 247 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhh-hHHHHHHHHHHhhhccCccccCCcccchhc
Confidence 345899999997644332 3688999 99999999653 468999985433
No 216
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=78.31 E-value=0.81 Score=43.07 Aligned_cols=45 Identities=33% Similarity=0.696 Sum_probs=31.4
Q ss_pred cccccccccCCc---eEEcCCCCccchHhhHHHHhc------------------c-----CCcccccccccc
Q 040660 434 SSCVICLDAPVE---GACVPCGHMAGCMSCLNEVKA------------------K-----KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~------------------~-----~~~CP~Cr~~i~ 479 (487)
.-|+||+--+.+ ...++|-|.+ .+.|+.+..+ + ...||+||..|.
T Consensus 116 gqCvICLygfa~~~~ft~T~C~Hy~-H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~ 186 (368)
T KOG4445|consen 116 GQCVICLYGFASSPAFTVTACDHYM-HFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK 186 (368)
T ss_pred CceEEEEEeecCCCceeeehhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence 468888865543 3457999988 8888766421 1 225999999885
No 217
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=78.03 E-value=0.62 Score=49.42 Aligned_cols=47 Identities=28% Similarity=0.644 Sum_probs=38.6
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHHhcc---CCccccccccccc
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK---KWGCPVCRANISQ 480 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~~ 480 (487)
..+|.||.....+++.+.|.|.| |..|....... ...||+|+..+.+
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~-l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIF-LKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeeccchhhhhHHH-HhhhhhceeeccCccccchhhhhhhhh
Confidence 36899999999999999999999 99998876543 3379999976653
No 218
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=77.13 E-value=1.4 Score=30.17 Aligned_cols=43 Identities=21% Similarity=0.592 Sum_probs=20.7
Q ss_pred cccccccccCCceEE-cCCCCccchHhhHHHHh----ccCCcccccccc
Q 040660 434 SSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVK----AKKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~----~~~~~CP~Cr~~ 477 (487)
..|++...+...++- ..|.|.- |++=..-+. ...+.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~-CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQ-CFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS---EEHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccc-eECHHHHHHHhhccCCeECcCCcCc
Confidence 469999988888774 6899998 765433332 235689999864
No 219
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.66 E-value=1 Score=46.78 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=28.8
Q ss_pred cccccccccC----CceEEcCCCCccchHhhHHHHhccCCccc
Q 040660 434 SSCVICLDAP----VEGACVPCGHMAGCMSCLNEVKAKKWGCP 472 (487)
Q Consensus 434 ~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP 472 (487)
..|.||+..+ ..++++-|||.. |..|++.+-.. .||
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghti-c~~c~~~lyn~--scp 51 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTI-CGHCVQLLYNA--SCP 51 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchH-HHHHHHhHhhc--cCC
Confidence 5799996543 567788999999 99999998765 477
No 220
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=74.99 E-value=2.4 Score=45.43 Aligned_cols=52 Identities=25% Similarity=0.424 Sum_probs=39.3
Q ss_pred cccccccc--ccCCceEEcCCCCc----cchHhhHHHHhcc--CCccccccccccceeEee
Q 040660 433 TSSCVICL--DAPVEGACVPCGHM----AGCMSCLNEVKAK--KWGCPVCRANISQVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~--~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CP~Cr~~i~~~~~~y 485 (487)
...|.||. +.+-++.+-||.+. ++..+|+..|... ..+|-+|..++. +.+||
T Consensus 12 ~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~-Fk~IY 71 (1175)
T COG5183 12 KRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK-FKDIY 71 (1175)
T ss_pred chhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee-eeeec
Confidence 36899988 46778889999864 4588999999765 447999988764 44555
No 221
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=74.47 E-value=2 Score=42.10 Aligned_cols=31 Identities=32% Similarity=0.786 Sum_probs=23.6
Q ss_pred CceEEc-CCCCccchHhhHHHHhccC---Ccccccc
Q 040660 444 VEGACV-PCGHMAGCMSCLNEVKAKK---WGCPVCR 475 (487)
Q Consensus 444 ~~~~~~-pCgH~~~C~~C~~~~~~~~---~~CP~Cr 475 (487)
.+..-+ .|||.| -..|+.+|...- ..||+|+
T Consensus 18 ~~l~~i~~cGhif-h~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 18 HELGPIGTCGHIF-HTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cccccccchhhHH-HHHHHHHHHccCCccCCCCcee
Confidence 333334 499999 999999997652 3799998
No 222
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=74.00 E-value=1 Score=43.75 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=26.1
Q ss_pred ccccccccccCCceEEcCC---C--CccchHhhHHHHhccCCccccccccccceeEee
Q 040660 433 TSSCVICLDAPVEGACVPC---G--HMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pC---g--H~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y 485 (487)
...|+||-..+.-.++..= | |.+ |..|...|......||.|-..-...+..|
T Consensus 172 ~g~CPvCGs~P~~s~l~~~~~~G~R~L~-Cs~C~t~W~~~R~~Cp~Cg~~~~~~l~~~ 228 (290)
T PF04216_consen 172 RGYCPVCGSPPVLSVLRGGEREGKRYLH-CSLCGTEWRFVRIKCPYCGNTDHEKLEYF 228 (290)
T ss_dssp -SS-TTT---EEEEEEE------EEEEE-ETTT--EEE--TTS-TTT---SS-EEE--
T ss_pred CCcCCCCCCcCceEEEecCCCCccEEEE-cCCCCCeeeecCCCCcCCCCCCCcceeeE
Confidence 3689999998887777654 3 455 99999999888889999977655544443
No 223
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=72.22 E-value=2.4 Score=40.89 Aligned_cols=46 Identities=28% Similarity=0.665 Sum_probs=35.1
Q ss_pred cccccccccC----CceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 434 SSCVICLDAP----VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..|+||.+-. ....-.||++.. |..|...+......||.||++...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~-~l~~~~t~~~~~~~~~~~rk~~~~ 299 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRL-CLFCHKTISDGDGRCPGCRKPYER 299 (327)
T ss_pred CCCCCCCCcccccccccccccccccc-hhhhhhcccccCCCCCccCCcccc
Confidence 3688888733 222234788986 999999999888899999987753
No 224
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=71.56 E-value=1.9 Score=41.72 Aligned_cols=44 Identities=23% Similarity=0.466 Sum_probs=33.2
Q ss_pred ccccccccccCCceEEc---CCCCcc-chHhhHHHHhccCCccccccc
Q 040660 433 TSSCVICLDAPVEGACV---PCGHMA-GCMSCLNEVKAKKWGCPVCRA 476 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~---pCgH~~-~C~~C~~~~~~~~~~CP~Cr~ 476 (487)
...|+||-..+.-.++. .=|+++ .|..|...|...+.+||.|..
T Consensus 187 ~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 187 RQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 46899999988655442 234333 299999999888889999976
No 225
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=67.77 E-value=3 Score=28.10 Aligned_cols=39 Identities=31% Similarity=0.633 Sum_probs=24.0
Q ss_pred cccccccCCc--eEEcCCCCc----cchHhhHHHHhcc--CCccccc
Q 040660 436 CVICLDAPVE--GACVPCGHM----AGCMSCLNEVKAK--KWGCPVC 474 (487)
Q Consensus 436 C~iC~~~~~~--~~~~pCgH~----~~C~~C~~~~~~~--~~~CP~C 474 (487)
|-||++...+ ....||+-. ++-..|+.+|... +..|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 6788876433 456788832 3578899999764 4478887
No 226
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.18 E-value=1.5 Score=47.21 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=32.5
Q ss_pred cccccccccCCceE-EcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 434 SSCVICLDAPVEGA-CVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..|..|.-...-|+ ...|||.| ...|.. .+..+||-|+.....
T Consensus 841 skCs~C~~~LdlP~VhF~CgHsy-HqhC~e---~~~~~CP~C~~e~~~ 884 (933)
T KOG2114|consen 841 SKCSACEGTLDLPFVHFLCGHSY-HQHCLE---DKEDKCPKCLPELRG 884 (933)
T ss_pred eeecccCCccccceeeeecccHH-HHHhhc---cCcccCCccchhhhh
Confidence 48999986654444 46899999 999998 444589999885543
No 227
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=67.02 E-value=2 Score=41.55 Aligned_cols=45 Identities=22% Similarity=0.471 Sum_probs=33.7
Q ss_pred ccccccccccCCceEEcC----CCCcc-chHhhHHHHhccCCcccccccc
Q 040660 433 TSSCVICLDAPVEGACVP----CGHMA-GCMSCLNEVKAKKWGCPVCRAN 477 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~p----CgH~~-~C~~C~~~~~~~~~~CP~Cr~~ 477 (487)
...|+||-..+.-.++.. =|+++ .|..|...|...+.+||.|...
T Consensus 184 ~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 184 RTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred CCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCCC
Confidence 358999999886554432 34333 2999999998888899999764
No 228
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=66.63 E-value=1.5 Score=49.56 Aligned_cols=44 Identities=32% Similarity=0.686 Sum_probs=37.0
Q ss_pred cccccccccCC-ceEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660 434 SSCVICLDAPV-EGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 434 ~~C~iC~~~~~-~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
..|.||.|... -....-|||.+ |..|...|...+..||.|...+
T Consensus 1154 ~~c~ic~dil~~~~~I~~cgh~~-c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1154 FVCEICLDILRNQGGIAGCGHEP-CCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred cchHHHHHHHHhcCCeeeechhH-hhhHHHHHHHHhccCcchhhhh
Confidence 48999999776 44556899999 9999999999888999997543
No 229
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.25 E-value=3.5 Score=38.78 Aligned_cols=28 Identities=36% Similarity=0.841 Sum_probs=21.9
Q ss_pred CCCccchHhhHHHHhc-------------cCCcccccccccc
Q 040660 451 CGHMAGCMSCLNEVKA-------------KKWGCPVCRANIS 479 (487)
Q Consensus 451 CgH~~~C~~C~~~~~~-------------~~~~CP~Cr~~i~ 479 (487)
|+-+. |.+|+.+|-. ++..||.||+.++
T Consensus 325 crp~w-c~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fc 365 (381)
T KOG3899|consen 325 CRPLW-CRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFC 365 (381)
T ss_pred cccHH-HHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceE
Confidence 66777 9999988742 3457999999876
No 230
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=63.52 E-value=2.3 Score=40.34 Aligned_cols=45 Identities=24% Similarity=0.722 Sum_probs=35.1
Q ss_pred cccccccc----cCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 434 SSCVICLD----APVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~----~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..|+||.+ ....+..++|||.- -..|.+......-.||+|.+ +..
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~-h~~cf~e~~~~~y~CP~C~~-~~d 207 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYM-HSRCFEEMICEGYTCPICSK-PGD 207 (276)
T ss_pred CCCchhHHHhccccccCCccCcccch-HHHHHHHHhccCCCCCcccc-hHH
Confidence 45999986 34666678999988 68999988766668999988 543
No 231
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=61.88 E-value=9.1 Score=25.19 Aligned_cols=38 Identities=21% Similarity=0.576 Sum_probs=20.4
Q ss_pred cccccccCCceEEcC---CCCccchHhhHHHHhccCC--ccccc
Q 040660 436 CVICLDAPVEGACVP---CGHMAGCMSCLNEVKAKKW--GCPVC 474 (487)
Q Consensus 436 C~iC~~~~~~~~~~p---CgH~~~C~~C~~~~~~~~~--~CP~C 474 (487)
|.+|.+.....+.=+ |+=.+ -..|+....+... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~-H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRL-HDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE--HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchH-HHHHHHHHHhcCCCCCCcCC
Confidence 567777665555433 66566 8889999876644 69987
No 232
>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses. These proteins may be involved in promoting survival of infected macrophages [].
Probab=60.64 E-value=17 Score=32.18 Aligned_cols=113 Identities=18% Similarity=0.106 Sum_probs=75.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHH----HHHHHcCCCccccCCCCCCCcHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVA----KTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v----~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
..++.+-.||+..+.|+|+++-+ ++...+ -.+-.-.|... .++++. ++++.+...-...+++.--.--|.
T Consensus 75 ~~q~LFElAC~~qkydiV~WI~q---nL~i~~--~~~iFdIA~~~-kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~ 148 (192)
T PF03158_consen 75 LNQELFELACEEQKYDIVKWIGQ---NLHIYN--PEDIFDIAFAK-KDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLE 148 (192)
T ss_pred HHHHHHHHHHHHccccHHHHHhh---ccCCCC--chhhhhhhhhc-cchhHHHHHHHHHHhhcccccccCHHHHHHHHHH
Confidence 35678889999999999999833 332221 23445666666 666543 233444222211100111113478
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN 130 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~ 130 (487)
+|+..|....|-..+++|.+++.. +|-.|+.++|..++.+++.
T Consensus 149 ~a~~kgll~F~letlkygg~~~~~------vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 149 KAAAKGLLPFVLETLKYGGNVDII------VLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHCCCHHHHHHHHHcCCcccHH------HHHHHHHhhHHHHHHHhhc
Confidence 999999999999999999998854 7899999999999998874
No 233
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.10 E-value=6 Score=36.62 Aligned_cols=50 Identities=26% Similarity=0.592 Sum_probs=34.7
Q ss_pred CcccccccccccCCceE----EcCCC-----CccchHhhHHHHhccC--------Cccccccccccce
Q 040660 431 DATSSCVICLDAPVEGA----CVPCG-----HMAGCMSCLNEVKAKK--------WGCPVCRANISQV 481 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~----~~pCg-----H~~~C~~C~~~~~~~~--------~~CP~Cr~~i~~~ 481 (487)
+.++.|-||+....+-. +-||. |.+ ...|+.+|-.++ ..||.|+.....+
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWV-HqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv 84 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWV-HQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIV 84 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHH-HHHHHHHHHhHHhcCCCCceeechhhcchheee
Confidence 44578999997665543 34887 444 889999996531 2599998876543
No 234
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.88 E-value=6.7 Score=37.41 Aligned_cols=50 Identities=22% Similarity=0.578 Sum_probs=34.7
Q ss_pred ccccc----ccccCCceEEcCCCCccchHhhHHHHhccC---Cccccccccc--cceeEee
Q 040660 434 SSCVI----CLDAPVEGACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANI--SQVIRLY 485 (487)
Q Consensus 434 ~~C~i----C~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i--~~~~~~y 485 (487)
..|+| |-+. -.++.+.|||.. -.+-+.++.+.. -+||+|-..- ..++|+|
T Consensus 337 FiCPVlKe~~t~E-NpP~ml~CgHVI-skeal~~LS~nG~~~FKCPYCP~~~~~~~~~rvr 395 (396)
T COG5109 337 FICPVLKELCTDE-NPPVMLECGHVI-SKEALSVLSQNGVLSFKCPYCPEMSKYENILRVR 395 (396)
T ss_pred eeccccHhhhccc-CCCeeeecccee-eHHHHHHHhhcCcEEeeCCCCCcchhhhhhhccc
Confidence 57877 4333 346678999999 888888887653 3799995533 2456665
No 235
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=55.83 E-value=7.6 Score=33.75 Aligned_cols=48 Identities=29% Similarity=0.690 Sum_probs=34.1
Q ss_pred CcccccccccccCCceE-----E--cCCCCccchHhhHHHHhcc-----------CCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGA-----C--VPCGHMAGCMSCLNEVKAK-----------KWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~-----~--~pCgH~~~C~~C~~~~~~~-----------~~~CP~Cr~~i~ 479 (487)
++...|-||+.-.-+.. + ..||.-| ..-|+..|.+. -..||+|-.+|.
T Consensus 163 d~~~~cgicyayqldGTipDqtCdN~qCgkpF-HqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 163 DELGACGICYAYQLDGTIPDQTCDNIQCGKPF-HQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred hhhhcccceeeeecCCccccccccccccCCcH-HHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 44467999986433322 2 5899888 88999998752 126999999986
No 236
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=55.41 E-value=15 Score=39.62 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=22.6
Q ss_pred CCCCccchHhhHHHHhcc------CCccccccccccc
Q 040660 450 PCGHMAGCMSCLNEVKAK------KWGCPVCRANISQ 480 (487)
Q Consensus 450 pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~~ 480 (487)
.|+|.+ |..|+..|..+ ...|++|..-|..
T Consensus 120 ~~~~~~-CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~s 155 (1134)
T KOG0825|consen 120 THVENQ-CPNCLKSCNDQLEESEKHTAHYFCEECVGS 155 (1134)
T ss_pred hhhhhh-hhHHHHHHHHHhhccccccccccHHHHhhh
Confidence 499999 99999998654 2258888765543
No 237
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.62 E-value=9.4 Score=35.32 Aligned_cols=45 Identities=27% Similarity=0.299 Sum_probs=33.3
Q ss_pred cccccccc----ccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 433 TSSCVICL----DAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 433 ~~~C~iC~----~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
...|+|-. +..+-.++.+|||.| -..-++++.. ..|++|.+.+..
T Consensus 111 ~fiCPvtgleMng~~~F~~l~~CGcV~-SerAlKeika--s~C~~C~a~y~~ 159 (293)
T KOG3113|consen 111 RFICPVTGLEMNGKYRFCALRCCGCVF-SERALKEIKA--SVCHVCGAAYQE 159 (293)
T ss_pred eeecccccceecceEEEEEEeccceec-cHHHHHHhhh--ccccccCCcccc
Confidence 36788843 344556667999999 8888888764 369999998863
No 238
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=54.49 E-value=7.7 Score=37.46 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=11.7
Q ss_pred CCcccccccccccCCc
Q 040660 430 KDATSSCVICLDAPVE 445 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~ 445 (487)
++....|+||-|+..-
T Consensus 12 edl~ElCPVCGDkVSG 27 (475)
T KOG4218|consen 12 EDLGELCPVCGDKVSG 27 (475)
T ss_pred cccccccccccCcccc
Confidence 4455689999998654
No 239
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=53.84 E-value=5.6 Score=27.59 Aligned_cols=12 Identities=33% Similarity=0.844 Sum_probs=6.3
Q ss_pred CCcccccccccc
Q 040660 468 KWGCPVCRANIS 479 (487)
Q Consensus 468 ~~~CP~Cr~~i~ 479 (487)
...||+|.++++
T Consensus 20 ~~~CPlC~r~l~ 31 (54)
T PF04423_consen 20 KGCCPLCGRPLD 31 (54)
T ss_dssp SEE-TTT--EE-
T ss_pred CCcCCCCCCCCC
Confidence 447999999886
No 240
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=51.74 E-value=6.1 Score=24.30 Aligned_cols=16 Identities=38% Similarity=0.933 Sum_probs=11.4
Q ss_pred CCccccccccccceeE
Q 040660 468 KWGCPVCRANISQVIR 483 (487)
Q Consensus 468 ~~~CP~Cr~~i~~~~~ 483 (487)
...||+|..+-..|.+
T Consensus 17 ~~~CP~Cg~~~~~F~~ 32 (33)
T cd00350 17 PWVCPVCGAPKDKFEK 32 (33)
T ss_pred CCcCcCCCCcHHHcEE
Confidence 3479999887666654
No 241
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=51.70 E-value=5.1 Score=40.46 Aligned_cols=31 Identities=29% Similarity=0.792 Sum_probs=21.9
Q ss_pred ccccccc-ccCCc---eEEcCCCCccchHhhHHHHh
Q 040660 434 SSCVICL-DAPVE---GACVPCGHMAGCMSCLNEVK 465 (487)
Q Consensus 434 ~~C~iC~-~~~~~---~~~~pCgH~~~C~~C~~~~~ 465 (487)
..|.||+ +.+.. ....-|+|.| |..|..+..
T Consensus 147 ~~C~iC~~e~~~~~~~f~~~~C~H~f-C~~C~k~~i 181 (384)
T KOG1812|consen 147 EECGICFVEDPEAEDMFSVLKCGHRF-CKDCVKQHI 181 (384)
T ss_pred ccCccCccccccHhhhHHHhcccchh-hhHHhHHHh
Confidence 5899999 33222 1135799999 999988753
No 242
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=51.69 E-value=7.7 Score=33.16 Aligned_cols=25 Identities=24% Similarity=0.555 Sum_probs=20.9
Q ss_pred CccchHhhHHHHhccCCccccccccccce
Q 040660 453 HMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 453 H~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
+.| |..|....-. .||-|..+|...
T Consensus 28 ~~f-C~kCG~~tI~---~Cp~C~~~IrG~ 52 (158)
T PF10083_consen 28 EKF-CSKCGAKTIT---SCPNCSTPIRGD 52 (158)
T ss_pred HHH-HHHhhHHHHH---HCcCCCCCCCCc
Confidence 567 9999988766 699999999854
No 243
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=49.47 E-value=3.2 Score=23.27 Aligned_cols=22 Identities=27% Similarity=0.693 Sum_probs=13.8
Q ss_pred hHhhHHHHhccCCccccccccc
Q 040660 457 CMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 457 C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
|..|...+......||.|..+|
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred CcccCCCCCCcCcchhhhCCcC
Confidence 5666666655555688776653
No 244
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=48.27 E-value=44 Score=36.24 Aligned_cols=30 Identities=30% Similarity=0.715 Sum_probs=23.2
Q ss_pred cccccccccCCc---------eEEcCCCCccchHhhHHHH
Q 040660 434 SSCVICLDAPVE---------GACVPCGHMAGCMSCLNEV 464 (487)
Q Consensus 434 ~~C~iC~~~~~~---------~~~~pCgH~~~C~~C~~~~ 464 (487)
..|..|...+.. --+-.||..| |..|....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVF-C~~CSSnR 499 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRL-CVFCITKR 499 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCcccc-CccccCCc
Confidence 579999988842 2356899999 99998654
No 245
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.85 E-value=6.4 Score=32.51 Aligned_cols=43 Identities=30% Similarity=0.739 Sum_probs=24.1
Q ss_pred ccccccccccCCceEEcCCCCcc------chHhhHHHHhcc----CCccccccccc
Q 040660 433 TSSCVICLDAPVEGACVPCGHMA------GCMSCLNEVKAK----KWGCPVCRANI 478 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~------~C~~C~~~~~~~----~~~CP~Cr~~i 478 (487)
...|.||... -..--|||.+ +|..|.-++..+ .+.|-+||+..
T Consensus 65 datC~IC~KT---KFADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q 117 (169)
T KOG3799|consen 65 DATCGICHKT---KFADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQ 117 (169)
T ss_pred Ccchhhhhhc---ccccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHH
Confidence 3589999853 2223588873 144444443322 22588887654
No 246
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.28 E-value=9.3 Score=37.90 Aligned_cols=33 Identities=27% Similarity=0.702 Sum_probs=26.1
Q ss_pred eEEcCCCCccchHhhHHHHhcc--CCcccccccccc
Q 040660 446 GACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANIS 479 (487)
Q Consensus 446 ~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 479 (487)
.+.+.|||.| =..|+++|..+ ...||.|...-+
T Consensus 22 ~vsl~cghlF-gs~cie~wl~k~~~~~cp~c~~kat 56 (463)
T KOG1645|consen 22 IVSLQCGHLF-GSQCIEKWLGKKTKMQCPLCSGKAT 56 (463)
T ss_pred Eeeecccccc-cHHHHHHHHhhhhhhhCcccCChhH
Confidence 4457899999 99999999854 337999976654
No 247
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.04 E-value=13 Score=38.38 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=27.2
Q ss_pred ccccccccccCCc-eEEcCCCCccchHhhHHHHh
Q 040660 433 TSSCVICLDAPVE-GACVPCGHMAGCMSCLNEVK 465 (487)
Q Consensus 433 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~ 465 (487)
...|-||.+.... .+.+.|||.| |..|.....
T Consensus 70 ~~~c~ic~~~~~~~~~~~~c~H~~-c~~cw~~yl 102 (444)
T KOG1815|consen 70 DVQCGICVESYDGEIIGLGCGHPF-CPPCWTGYL 102 (444)
T ss_pred cccCCcccCCCcchhhhcCCCcHH-HHHHHHHHh
Confidence 3589999999885 7778999999 999988843
No 248
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=42.68 E-value=13 Score=35.51 Aligned_cols=42 Identities=21% Similarity=0.510 Sum_probs=23.6
Q ss_pred cCCceEEcCCCCccch--HhhHHHHhccCCccccccccccceeEe
Q 040660 442 APVEGACVPCGHMAGC--MSCLNEVKAKKWGCPVCRANISQVIRL 484 (487)
Q Consensus 442 ~~~~~~~~pCgH~~~C--~~C~~~~~~~~~~CP~Cr~~i~~~~~~ 484 (487)
..+.-|.+.|||.-.- +.|-+.--.+..+||+||.. ..++.+
T Consensus 313 ~~QP~vYl~CGHV~G~H~WG~~e~~g~~~r~CPmC~~~-gp~V~L 356 (429)
T KOG3842|consen 313 EKQPWVYLNCGHVHGYHNWGVRENTGQRERECPMCRVV-GPYVPL 356 (429)
T ss_pred ccCCeEEEeccccccccccccccccCcccCcCCeeeee-cceeee
Confidence 3455677899987532 22222222235589999874 335544
No 249
>PLN02189 cellulose synthase
Probab=41.75 E-value=16 Score=41.18 Aligned_cols=45 Identities=24% Similarity=0.599 Sum_probs=31.5
Q ss_pred cccccccccC----CceEEcCCC---CccchHhhHHHHhcc-CCcccccccccc
Q 040660 434 SSCVICLDAP----VEGACVPCG---HMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~----~~~~~~pCg---H~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
..|.||-|.. ..-.|+.|. --. |..|.+.-.+. +..||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpv-Cr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPV-CRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCcc-ccchhhhhhhcCCccCcccCCchh
Confidence 5899999863 333456554 334 99999765443 557999998776
No 250
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=21 Score=32.94 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=27.7
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHH
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEV 464 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~ 464 (487)
-.-|..|+....++|+.|=||.| |.+|+-..
T Consensus 43 FdcCsLtLqPc~dPvit~~Gylf-drEaILe~ 73 (303)
T KOG3039|consen 43 FDCCSLTLQPCRDPVITPDGYLF-DREAILEY 73 (303)
T ss_pred cceeeeecccccCCccCCCCeee-eHHHHHHH
Confidence 36799999999999999999999 99998763
No 251
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=39.39 E-value=4.7 Score=33.22 Aligned_cols=44 Identities=30% Similarity=0.662 Sum_probs=29.8
Q ss_pred ccccccccccC-----CceEEcCCCCccchHhhHHHHh-ccCCcccccccc
Q 040660 433 TSSCVICLDAP-----VEGACVPCGHMAGCMSCLNEVK-AKKWGCPVCRAN 477 (487)
Q Consensus 433 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~-~~~~~CP~Cr~~ 477 (487)
...|.+|...+ ...++.-|+|.+ |..|..... ...+.|-+|.+.
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~V-C~~C~~~~~~~~~WlC~vC~k~ 103 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRV-CKKCGVYSKKEPIWLCKVCQKQ 103 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEE-ETTSEEETSSSCCEEEHHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccc-cCccCCcCCCCCCEEChhhHHH
Confidence 35899998643 446678899999 999977632 224579999763
No 252
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=38.79 E-value=2.3 Score=44.26 Aligned_cols=112 Identities=14% Similarity=-0.094 Sum_probs=59.9
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCC----------CcH--------HHHHHHHHcCCC
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNP----------GLY--------DVAKTLIELGAK 66 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~----------g~~--------~~v~~Ll~~ga~ 66 (487)
..+.++++++...|....++........ .....++.+++++.. +.. +....|+....+
T Consensus 53 s~~~~~~~l~~~~g~~~~~~~a~~fDv~----~~g~~~~gl~~aml~a~~~~~~P~~~a~~~~~~~~~~~~~~ll~~~~~ 128 (503)
T KOG0513|consen 53 SLAYLELRLQNIDGDPSAARLADYFDVS----IAGTNTGGLITAMLFAPNDCGRPRFGATDILWKFNLEKAPKLLEKFDD 128 (503)
T ss_pred hhcccHHHHHhccCChHhhHhhhccCce----eeccCCchhhhhhhhccccccCccccccchhhhhhhcCCCcccccccc
Confidence 3466778888888888766655443321 222223333322210 111 222223333333
Q ss_pred ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH
Q 040660 67 VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT 122 (487)
Q Consensus 67 ~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~ 122 (487)
.+.. -.+..++++........+++..++..+..-...+.+|.|+||.+...++.
T Consensus 129 ~~~~--~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~g~t~L~~tl~~~~~ 182 (503)
T KOG0513|consen 129 PNFI--KGDLNLALRILVSGDKYSGAEVLLTKYEIADAREVLGNTKLHLTLTKENL 182 (503)
T ss_pred cccc--ccccccceeeeecCccccceeecccccccchhhhhcCCceeeeeccCCCc
Confidence 3321 23455667776666666776666665555555666777888877776665
No 253
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=37.89 E-value=1.7e+02 Score=30.03 Aligned_cols=26 Identities=27% Similarity=0.726 Sum_probs=17.9
Q ss_pred ccccccccccCCceEEcCCCCcc--chHhhHHHH
Q 040660 433 TSSCVICLDAPVEGACVPCGHMA--GCMSCLNEV 464 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~--~C~~C~~~~ 464 (487)
+..|.||-|+. -|.|.- +|..|---.
T Consensus 269 e~~CAVCgDnA------aCqHYGvRTCEGCKGFF 296 (605)
T KOG4217|consen 269 EGLCAVCGDNA------ACQHYGVRTCEGCKGFF 296 (605)
T ss_pred cceeeecCChH------HhhhcCccccccchHHH
Confidence 57899999873 377753 388884433
No 254
>KOG4451 consensus Uncharacterized conserved protein (tumor-associated antigen HCA127 in humans) [Function unknown]
Probab=37.76 E-value=18 Score=32.80 Aligned_cols=23 Identities=30% Similarity=0.852 Sum_probs=19.9
Q ss_pred hHhhHHHHhccCCcccccccccc
Q 040660 457 CMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 457 C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
|..|-.++.+.-+.||+|+..-.
T Consensus 252 ClsChqqIHRNAPiCPlCKaKsR 274 (286)
T KOG4451|consen 252 CLSCHQQIHRNAPICPLCKAKSR 274 (286)
T ss_pred HHHHHHHHhcCCCCCcchhhccc
Confidence 99999999998889999987543
No 255
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=37.64 E-value=27 Score=26.15 Aligned_cols=46 Identities=24% Similarity=0.564 Sum_probs=17.6
Q ss_pred cccccccccC----CceEEc---CCCCccchHhhHHHHhc-cCCccccccccccc
Q 040660 434 SSCVICLDAP----VEGACV---PCGHMAGCMSCLNEVKA-KKWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~----~~~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 480 (487)
..|.||-|.. .--+|+ -|+--+ |..|.+-=.+ ....||.|+.....
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPv-Cr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPV-CRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS------HHHHHHHHHTS-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCcc-chhHHHHHhhcCcccccccCCCccc
Confidence 5899998743 122344 444444 9999776433 35579999977653
No 256
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=36.58 E-value=1.8e+02 Score=31.94 Aligned_cols=8 Identities=25% Similarity=0.447 Sum_probs=3.3
Q ss_pred cCCCCCCC
Q 040660 202 LEEPKFQH 209 (487)
Q Consensus 202 ~~~~~~~~ 209 (487)
..+|+|..
T Consensus 441 ~~DPdf~y 448 (1102)
T KOG1924|consen 441 GMDPDFKY 448 (1102)
T ss_pred CCCCCcch
Confidence 33444443
No 257
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=36.36 E-value=4.3 Score=29.76 Aligned_cols=42 Identities=24% Similarity=0.559 Sum_probs=20.6
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
..|+.|.......- ||.. |..|...... ...||-|.+++..+
T Consensus 2 ~~CP~C~~~L~~~~----~~~~-C~~C~~~~~~-~a~CPdC~~~Le~L 43 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYH-CEACQKDYKK-EAFCPDCGQPLEVL 43 (70)
T ss_dssp -B-SSS-SBEEEET----TEEE-ETTT--EEEE-EEE-TTT-SB-EEE
T ss_pred CcCCCCCCccEEeC----CEEE-Ccccccccee-cccCCCcccHHHHH
Confidence 36888876532221 5655 8888776543 33688888877643
No 258
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=36.21 E-value=12 Score=37.17 Aligned_cols=34 Identities=24% Similarity=0.566 Sum_probs=0.0
Q ss_pred CceEEcCCCCccchHhhHHHHh--ccCCcccccccc
Q 040660 444 VEGACVPCGHMAGCMSCLNEVK--AKKWGCPVCRAN 477 (487)
Q Consensus 444 ~~~~~~pCgH~~~C~~C~~~~~--~~~~~CP~Cr~~ 477 (487)
+.-|++.|||...-..=..+-. .....||+||+.
T Consensus 302 qP~VYl~CGHVhG~h~Wg~~~~~~~~~r~CPlCr~~ 337 (416)
T PF04710_consen 302 QPWVYLNCGHVHGYHNWGQDSDRDPRSRTCPLCRQV 337 (416)
T ss_dssp ------------------------------------
T ss_pred CceeeccccceeeecccccccccccccccCCCcccc
Confidence 4456789999873221111001 013479999874
No 259
>PF10217 DUF2039: Uncharacterized conserved protein (DUF2039); InterPro: IPR019351 This entry is a region of approximately 100 residues containing three pairs of cysteine residues. The region is conserved from plants to humans but its function is unknown.
Probab=35.75 E-value=9.5 Score=29.67 Aligned_cols=35 Identities=31% Similarity=0.708 Sum_probs=24.5
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 477 (487)
..|..|.+.-..-+ -|.. |..|+..... |+-|.++
T Consensus 56 ~kC~~C~qktVk~A----Yh~i-C~~Ca~~~~v----CaKC~k~ 90 (92)
T PF10217_consen 56 KKCNKCQQKTVKHA----YHVI-CDPCAKELKV----CAKCGKP 90 (92)
T ss_pred ccccccccchHHHH----HHHH-HHHHHHhhcc----CcccCCC
Confidence 46666665543332 3777 9999999875 9999764
No 260
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=35.73 E-value=16 Score=22.64 Aligned_cols=14 Identities=29% Similarity=0.726 Sum_probs=10.5
Q ss_pred ccccccccccceeE
Q 040660 470 GCPVCRANISQVIR 483 (487)
Q Consensus 470 ~CP~Cr~~i~~~~~ 483 (487)
.||+|..+-..|.+
T Consensus 20 ~CP~Cg~~~~~F~~ 33 (34)
T cd00729 20 KCPICGAPKEKFEE 33 (34)
T ss_pred cCcCCCCchHHcEE
Confidence 69999887666554
No 261
>KOG3836 consensus HLH transcription factor EBF/Olf-1 and related DNA binding proteins [Transcription]
Probab=35.28 E-value=9.6 Score=39.95 Aligned_cols=48 Identities=31% Similarity=0.374 Sum_probs=26.8
Q ss_pred CcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q 040660 52 GLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101 (487)
Q Consensus 52 g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~ 101 (487)
+....+-.|++.++.++.. |..|.+|+|+++..|..++.+.++....+
T Consensus 407 ~~ss~v~~lik~~~~~~~~--d~f~~~p~~~~~~sgdp~~~~~~~~~~~~ 454 (605)
T KOG3836|consen 407 NSSSLVFTLIKKGAHPNDD--DKFGFTPLHIPQISGDPRIIQLLLNCKVA 454 (605)
T ss_pred CCccceeeeecccCccchh--cccccccccccCCCCCHHHhhhhhhhhhh
Confidence 3334444455555555554 56666666666666666666666554433
No 262
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=34.89 E-value=22 Score=32.99 Aligned_cols=25 Identities=32% Similarity=0.773 Sum_probs=21.0
Q ss_pred ccchHhhHHHHhccCCccccccccc
Q 040660 454 MAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 454 ~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
+=.|..|-.++-++-+-||+|...-
T Consensus 194 MK~C~sC~qqIHRNAPiCPlCK~Ks 218 (230)
T PF10146_consen 194 MKTCQSCHQQIHRNAPICPLCKAKS 218 (230)
T ss_pred cchhHhHHHHHhcCCCCCccccccc
Confidence 4459999999999888999997654
No 263
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=34.40 E-value=32 Score=31.27 Aligned_cols=45 Identities=29% Similarity=0.642 Sum_probs=32.8
Q ss_pred cccccccccC--CceEEcCCCCccchHhhHHHHhcc--------CCcccccccccc
Q 040660 434 SSCVICLDAP--VEGACVPCGHMAGCMSCLNEVKAK--------KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~~~~--------~~~CP~Cr~~i~ 479 (487)
..|..|-... .+.+-+-|-|.| -+.|...+..+ .-.||.|.++|-
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlf-HW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLF-HWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred CCCceeCCccccCcceeehhhhhH-HHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 4577776533 455567899999 99999887543 126999998874
No 264
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=33.22 E-value=31 Score=23.68 Aligned_cols=26 Identities=23% Similarity=0.648 Sum_probs=15.5
Q ss_pred cCCCCccchHhhHHHHhccCCcccccc
Q 040660 449 VPCGHMAGCMSCLNEVKAKKWGCPVCR 475 (487)
Q Consensus 449 ~pCgH~~~C~~C~~~~~~~~~~CP~Cr 475 (487)
-.|++.| |.+|-.-+-..--.||.|.
T Consensus 25 ~~C~~~F-C~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHF-CIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp TTTT--B--HHHHHTTTTTS-SSSTT-
T ss_pred CCCCCcc-ccCcChhhhccccCCcCCC
Confidence 3788888 9999766554434699984
No 265
>KOG1595 consensus CCCH-type Zn-finger protein [General function prediction only]
Probab=31.19 E-value=8.8 Score=39.54 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=39.1
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHH---cCCHHHHHHHHhCCCcccccccccCCCCHH
Q 040660 75 HGGTPLHHAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARA---KGFTNVVRAIENHICIFSGWLRELYGPGFL 148 (487)
Q Consensus 75 ~g~TpLh~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~---~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L 148 (487)
+.+|+|++|+..|..+++.+++..+ .+++-.-.+|.. |.++. .|.++.+..|..+++..+ ..|..|.-+.
T Consensus 57 ~qR~~~~v~~~~Gs~~~~~~i~~~~~~e~~~~C~~~~~--~C~~~g~s~~~~e~~~hL~~~k~~~~--~tda~g~~~~ 130 (528)
T KOG1595|consen 57 NQRRRRPVARRDGSFNYSPDIYCTKYDEVTGICPDGDE--HCAVLGRSVGDTERTYHLRYYKTLPC--VTDARGNCVK 130 (528)
T ss_pred ccccccchhhhcCccccccceeecchhhccccCCCCcc--cchhcccccCCcceeEeccccccccC--ccccCCCccc
Confidence 3456677777777766666666544 445544445555 44433 234556666666666665 5555554443
No 266
>PF10764 Gin: Inhibitor of sigma-G Gin; InterPro: IPR019700 Gin allows sigma-F to delay late forespore transcription by preventing sigma-G to take over before the cell has reached a critical stage of development. Gin is also known as CsfB [].
Probab=30.52 E-value=38 Score=22.66 Aligned_cols=31 Identities=29% Similarity=0.725 Sum_probs=24.0
Q ss_pred ccccccccCCceEEcCCCCccchHhhHHHHhcc
Q 040660 435 SCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK 467 (487)
Q Consensus 435 ~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~ 467 (487)
.|.||-....+...+ .|+.. |..|-..+.+.
T Consensus 1 ~CiiC~~~~~~GI~I-~~~fI-C~~CE~~iv~~ 31 (46)
T PF10764_consen 1 KCIICGKEKEEGIHI-YGKFI-CSDCEKEIVNT 31 (46)
T ss_pred CeEeCCCcCCCCEEE-ECeEe-hHHHHHHhccC
Confidence 389999888887654 67655 99999888653
No 267
>PLN02436 cellulose synthase A
Probab=29.28 E-value=34 Score=38.81 Aligned_cols=45 Identities=24% Similarity=0.631 Sum_probs=30.7
Q ss_pred cccccccccC----CceEEcCC---CCccchHhhHHHHhcc-CCcccccccccc
Q 040660 434 SSCVICLDAP----VEGACVPC---GHMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~----~~~~~~pC---gH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
..|.||-|.. .--.|+-| +--+ |..|.+.-.+. +..||.|++...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpv-Cr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPV-CRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCcc-ccchhhhhhhcCCccCcccCCchh
Confidence 5899999864 12234544 4445 99999765443 557999998776
No 268
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=28.68 E-value=13 Score=21.46 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=11.3
Q ss_pred hHhhHHHHhccCCcccccccc
Q 040660 457 CMSCLNEVKAKKWGCPVCRAN 477 (487)
Q Consensus 457 C~~C~~~~~~~~~~CP~Cr~~ 477 (487)
|..|...+......||.|-++
T Consensus 5 Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 5 CPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CcccCCcCCcccccChhhCCC
Confidence 555555444444457777554
No 269
>COG4306 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.42 E-value=28 Score=28.45 Aligned_cols=21 Identities=33% Similarity=0.877 Sum_probs=16.3
Q ss_pred hHhhHHHHhccCCccccccccccc
Q 040660 457 CMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 457 C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
|..|...-.. .||+|..+|..
T Consensus 31 cskcgeati~---qcp~csasirg 51 (160)
T COG4306 31 CSKCGEATIT---QCPICSASIRG 51 (160)
T ss_pred HhhhchHHHh---cCCccCCcccc
Confidence 9999776443 49999999975
No 270
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=28.18 E-value=50 Score=26.53 Aligned_cols=42 Identities=26% Similarity=0.718 Sum_probs=25.2
Q ss_pred cccccccccCCceEE--------cCC---CCccchHhhHHHHh---------ccCCccccccc
Q 040660 434 SSCVICLDAPVEGAC--------VPC---GHMAGCMSCLNEVK---------AKKWGCPVCRA 476 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~--------~pC---gH~~~C~~C~~~~~---------~~~~~CP~Cr~ 476 (487)
..|-.|+.+..+... ..| .=.| |..|+...- ...+.||.||.
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~f-C~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKF-CGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCccee-hHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 357777765443331 234 4445 999965532 23568999986
No 271
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=27.75 E-value=32 Score=23.80 Aligned_cols=23 Identities=30% Similarity=0.622 Sum_probs=13.1
Q ss_pred CCCCccchHhhHHHHhccCCccccc
Q 040660 450 PCGHMAGCMSCLNEVKAKKWGCPVC 474 (487)
Q Consensus 450 pCgH~~~C~~C~~~~~~~~~~CP~C 474 (487)
-|||.+-..-.... .....||.|
T Consensus 33 ~Cgh~w~~~v~~R~--~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDRT--RRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhhc--cCCCCCCCC
Confidence 57787744433222 234479988
No 272
>PF01671 ASFV_360: African swine fever virus multigene family 360 protein; InterPro: IPR002595 The multigene family 360 protein are found within the African swine fever virus (ASFV) genome which consist of dsDNA and has similar structural features to the poxviruses []. The biological function of this family is not known [], although Q65137 from SWISSPROT is a major structural protein [].; GO: 0042330 taxis
Probab=27.72 E-value=1.2e+02 Score=27.60 Aligned_cols=103 Identities=14% Similarity=-0.017 Sum_probs=54.8
Q ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc-HHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC-CH
Q 040660 12 YQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL-YDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG-LE 89 (487)
Q Consensus 12 ~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~-~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g-~~ 89 (487)
-.|++.+-.+.++++-++-..++. =-|..|... ++ .|+-+.--+...++|.- --+.+||... +.
T Consensus 90 ~~Av~ynL~~AI~Yfyq~y~hl~~------WRL~CaL~f-NnvfdlHe~y~~eki~mdin-------eMM~lAC~~d~N~ 155 (215)
T PF01671_consen 90 AIAVQYNLKEAIQYFYQKYPHLND------WRLICALYF-NNVFDLHEIYNKEKIRMDIN-------EMMRLACMYDNNF 155 (215)
T ss_pred HHHHHhhhHHHHHHHHHhccchhh------HHHHHHHHh-CCHHHHHHHHHHhhcCCCHH-------HHHHHHHcCCCCc
Confidence 357788888888888877544431 115566666 44 34444444444444331 2356666443 34
Q ss_pred HHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Q 040660 90 RTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIF 135 (487)
Q Consensus 90 ~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~ 135 (487)
-.+-+-..-|||+|. ++...+.+.+..-+=+=++-||+.
T Consensus 156 ltIYYCf~LGAdIN~-------AM~~si~~~n~~N~fFCIDLGAna 194 (215)
T PF01671_consen 156 LTIYYCFALGADINQ-------AMLTSIQNYNIGNMFFCIDLGANA 194 (215)
T ss_pred hHHHHHHHhcccHHH-------HHHHHHHhcccccEEeeeccCCCh
Confidence 444444455666652 455555555554444445555553
No 273
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=27.06 E-value=22 Score=30.48 Aligned_cols=23 Identities=39% Similarity=0.703 Sum_probs=14.6
Q ss_pred CcccccccccccCC---ceEEcCCCC
Q 040660 431 DATSSCVICLDAPV---EGACVPCGH 453 (487)
Q Consensus 431 ~~~~~C~iC~~~~~---~~~~~pCgH 453 (487)
+...+|+||+|... ..+-+||-.
T Consensus 175 ddkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 175 DDKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred ccCCcEEEEhhhccCCCceeccceEE
Confidence 44579999998653 233467753
No 274
>KOG4846 consensus Nuclear receptor [Signal transduction mechanisms]
Probab=26.75 E-value=2e+02 Score=29.03 Aligned_cols=14 Identities=36% Similarity=0.589 Sum_probs=10.3
Q ss_pred cccccccccccCCc
Q 040660 432 ATSSCVICLDAPVE 445 (487)
Q Consensus 432 ~~~~C~iC~~~~~~ 445 (487)
....|.||-|...-
T Consensus 131 ~~~lCkVCgDkASG 144 (538)
T KOG4846|consen 131 AISLCKVCGDKASG 144 (538)
T ss_pred eeEeehhhcccccc
Confidence 34689999987543
No 275
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.00 E-value=72 Score=33.98 Aligned_cols=44 Identities=25% Similarity=0.701 Sum_probs=32.0
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
+....|.+|++.. .....+|-|.. |..+...++. .||.|+..+.
T Consensus 477 ~~~~~~~~~~~~~-~~~~~~~~~~~-~l~~~~~~~~---~~pl~~~~~~ 520 (543)
T KOG0802|consen 477 EPNDVCAICYQEM-SARITPCSHAL-CLRKWLYVQE---VCPLCHTYMK 520 (543)
T ss_pred cccCcchHHHHHH-Hhccccccchh-HHHhhhhhcc---ccCCCchhhh
Confidence 4457899999887 55556887776 7776666554 6999988664
No 276
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=25.78 E-value=55 Score=30.02 Aligned_cols=40 Identities=33% Similarity=0.319 Sum_probs=33.5
Q ss_pred HHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC
Q 040660 26 LCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK 66 (487)
Q Consensus 26 Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~ 66 (487)
|++.|+..|..|....|+=.+|.+. ++.+.-+.|++.|+.
T Consensus 1 lle~ga~wn~id~~n~t~gd~a~er-n~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 1 LLEYGAGWNFIDYENKTVGDLALER-NQSRLYRRLVEAGVP 40 (271)
T ss_pred CcccCCCccccChhhCCchHHHHHc-cHHHHHHHHHHcCCc
Confidence 4677888888888888888888888 888888888888764
No 277
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=25.23 E-value=29 Score=23.70 Aligned_cols=14 Identities=36% Similarity=0.674 Sum_probs=8.6
Q ss_pred ccccccccccceeE
Q 040660 470 GCPVCRANISQVIR 483 (487)
Q Consensus 470 ~CP~Cr~~i~~~~~ 483 (487)
.||+|..+-.+|.+
T Consensus 36 ~CP~C~a~K~~F~~ 49 (50)
T cd00730 36 VCPVCGAGKDDFEP 49 (50)
T ss_pred CCCCCCCcHHHcEe
Confidence 57777666555544
No 278
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=24.21 E-value=47 Score=22.84 Aligned_cols=20 Identities=25% Similarity=0.772 Sum_probs=13.8
Q ss_pred hHhhHHHHhcc------CCccccccc
Q 040660 457 CMSCLNEVKAK------KWGCPVCRA 476 (487)
Q Consensus 457 C~~C~~~~~~~------~~~CP~Cr~ 476 (487)
|..|-+-+... +.+||-|..
T Consensus 7 C~~CnKlLa~a~~~~yle~KCPrCK~ 32 (60)
T COG4416 7 CAKCNKLLAEAEGQAYLEKKCPRCKE 32 (60)
T ss_pred hHHHhHHHHhcccceeeeecCCccce
Confidence 77787766543 447999954
No 279
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=24.20 E-value=35 Score=32.99 Aligned_cols=41 Identities=22% Similarity=0.678 Sum_probs=28.5
Q ss_pred cccccccccCCce---EEcCCCCccchHhhHHHHhccCCcccccc
Q 040660 434 SSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKWGCPVCR 475 (487)
Q Consensus 434 ~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr 475 (487)
..|-.|.+..... .+-.|.|.| |..|-.-+-..--.||.|.
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~F-CldCDv~iHesLh~CpgCe 374 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVF-CLDCDVFIHESLHNCPGCE 374 (378)
T ss_pred cceeeeccccCCCCcEEchhcccee-eccchHHHHhhhhcCCCcC
Confidence 3599996544333 334788999 9999766654433699996
No 280
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.61 E-value=37 Score=37.45 Aligned_cols=30 Identities=30% Similarity=0.476 Sum_probs=22.7
Q ss_pred cccccccccCCc--eEEcCCCCccchHhhHHHH
Q 040660 434 SSCVICLDAPVE--GACVPCGHMAGCMSCLNEV 464 (487)
Q Consensus 434 ~~C~iC~~~~~~--~~~~pCgH~~~C~~C~~~~ 464 (487)
..|-+|.-.... -++.||||.| ...|+.+.
T Consensus 818 d~C~~C~~~ll~~pF~vf~CgH~F-H~~Cl~~~ 849 (911)
T KOG2034|consen 818 DSCDHCGRPLLIKPFYVFPCGHCF-HRDCLIRH 849 (911)
T ss_pred cchHHhcchhhcCcceeeeccchH-HHHHHHHH
Confidence 589999865533 3335999999 99998775
No 281
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=23.49 E-value=63 Score=29.67 Aligned_cols=40 Identities=25% Similarity=0.220 Sum_probs=33.9
Q ss_pred HHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC
Q 040660 60 LIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN 101 (487)
Q Consensus 60 Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~ 101 (487)
|++.|+.-|.. |....|+=-+|.+.|+.++.+.|++.|+.
T Consensus 1 lle~ga~wn~i--d~~n~t~gd~a~ern~~rly~~lv~~gv~ 40 (271)
T KOG1709|consen 1 LLEYGAGWNFI--DYENKTVGDLALERNQSRLYRRLVEAGVP 40 (271)
T ss_pred CcccCCCcccc--ChhhCCchHHHHHccHHHHHHHHHHcCCc
Confidence 46778888887 88888999999999999999999988865
No 282
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=23.07 E-value=84 Score=16.42 Aligned_cols=15 Identities=33% Similarity=0.497 Sum_probs=12.5
Q ss_pred hhHHHHHHhhhhhhh
Q 040660 290 EDLELAMAINASIQT 304 (487)
Q Consensus 290 ~~~~~~~~~~~s~~~ 304 (487)
+|.+++.|+..|++.
T Consensus 3 Ed~~L~~Al~~S~~e 17 (18)
T PF02809_consen 3 EDEDLQRALEMSLEE 17 (18)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhcc
Confidence 678899999999874
No 283
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=22.99 E-value=18 Score=21.98 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=11.7
Q ss_pred CccchHhhHHHHhcc----CCccccccc
Q 040660 453 HMAGCMSCLNEVKAK----KWGCPVCRA 476 (487)
Q Consensus 453 H~~~C~~C~~~~~~~----~~~CP~Cr~ 476 (487)
|.| |..|...+... ...||-|..
T Consensus 3 ~rf-C~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 3 HRF-CGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp TSB--TTT--BEEE-SSSS-EEESSSS-
T ss_pred Ccc-cCcCCccccCCCCcCEeECCCCcC
Confidence 677 88887776443 225888865
No 284
>PRK01343 zinc-binding protein; Provisional
Probab=22.64 E-value=36 Score=23.95 Aligned_cols=10 Identities=30% Similarity=0.816 Sum_probs=6.6
Q ss_pred cccccccccc
Q 040660 470 GCPVCRANIS 479 (487)
Q Consensus 470 ~CP~Cr~~i~ 479 (487)
.||+|++++.
T Consensus 11 ~CP~C~k~~~ 20 (57)
T PRK01343 11 PCPECGKPST 20 (57)
T ss_pred cCCCCCCcCc
Confidence 5777777654
No 285
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=22.51 E-value=34 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.597 Sum_probs=20.9
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhcc--CCcccccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK--KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 479 (487)
..|++|.+. -+..-+ +.-|...-... ...||+|...+.
T Consensus 3 f~CP~C~~~-~~~~~L-------~~H~~~~H~~~~~~v~CPiC~~~~~ 42 (54)
T PF05605_consen 3 FTCPYCGKG-FSESSL-------VEHCEDEHRSESKNVVCPICSSRVT 42 (54)
T ss_pred cCCCCCCCc-cCHHHH-------HHHHHhHCcCCCCCccCCCchhhhh
Confidence 578888873 332221 44444443322 336999987544
No 286
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.22 E-value=60 Score=26.36 Aligned_cols=41 Identities=24% Similarity=0.556 Sum_probs=28.5
Q ss_pred cccccccccCCce--------------EEcCCCCccchHhhHHHHhccCCcccccc
Q 040660 434 SSCVICLDAPVEG--------------ACVPCGHMAGCMSCLNEVKAKKWGCPVCR 475 (487)
Q Consensus 434 ~~C~iC~~~~~~~--------------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr 475 (487)
..|..|...+... ..-.|.+.| |.+|-.-+-..-..||.|.
T Consensus 56 ~~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 56 RFCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVF-CVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CcccCcCCCCCCcccccccccccccceeCCCCCCcc-ccccchhhhhhccCCcCCC
Confidence 4588888755432 245788988 9999666654434699995
No 287
>KOG0513 consensus Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=21.46 E-value=2.8 Score=43.57 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=57.1
Q ss_pred CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHH
Q 040660 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116 (487)
Q Consensus 37 d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A 116 (487)
-....++++..+.. ...+++..++..+..-+.+ +..|.|+||.+...++. +..++ ..|-.+.+|+++.
T Consensus 133 ~~~~~~~~~~~~s~-~~~~~~~~~l~~~~~~~~~--~~~g~t~L~~tl~~~~~--~~~i~-------~ldl~~~~P~lf~ 200 (503)
T KOG0513|consen 133 KGDLNLALRILVSG-DKYSGAEVLLTKYEIADAR--EVLGNTKLHLTLTKENL--LVVIP-------CLDLKSLTPNLFS 200 (503)
T ss_pred ccccccceeeeecC-ccccceeecccccccchhh--hhcCCceeeeeccCCCc--ceEEE-------eeccCcCCceeee
Confidence 34567888888877 7778887777766555554 77899999999988877 22222 3444557888877
Q ss_pred HHcCCHHHHHHHHhCCCccc
Q 040660 117 RAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 117 ~~~g~~~~v~~Ll~~ga~~~ 136 (487)
+..+...-+-.++.+++...
T Consensus 201 ~~~~~~~~~v~~~~~~~~~~ 220 (503)
T KOG0513|consen 201 IYDALGTKIVPLLDFKAIDI 220 (503)
T ss_pred eeccccccchhhhhhhhhhh
Confidence 76655542233344444443
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=21.41 E-value=1.4e+02 Score=30.84 Aligned_cols=107 Identities=13% Similarity=0.066 Sum_probs=50.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHH-HHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHh
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLI-AACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKR 86 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~-~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~ 86 (487)
++-+-+|.+.|+++.+..+.+.--+. .-+.-|- .|... |++++++.-..+..|.+. -+.+....
T Consensus 322 ~~rFeLAl~lg~L~~A~~~a~~~~~~-----~~W~~Lg~~AL~~-g~~~lAe~c~~k~~d~~~---------L~lLy~~~ 386 (443)
T PF04053_consen 322 DHRFELALQLGNLDIALEIAKELDDP-----EKWKQLGDEALRQ-GNIELAEECYQKAKDFSG---------LLLLYSST 386 (443)
T ss_dssp HHHHHHHHHCT-HHHHHHHCCCCSTH-----HHHHHHHHHHHHT-TBHHHHHHHHHHCT-HHH---------HHHHHHHC
T ss_pred HHHhHHHHhcCCHHHHHHHHHhcCcH-----HHHHHHHHHHHHc-CCHHHHHHHHHhhcCccc---------cHHHHHHh
Confidence 45555666666666665554332111 1112222 23334 777777766666544432 24555666
Q ss_pred CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH-HHHHHHHhCCC
Q 040660 87 GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT-NVVRAIENHIC 133 (487)
Q Consensus 87 g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll~~ga 133 (487)
|+.+-++.|.+.- ....+-+.+++.+...|.. +++++|++.|-
T Consensus 387 g~~~~L~kl~~~a----~~~~~~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 387 GDREKLSKLAKIA----EERGDINIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp T-HHHHHHHHHHH----HHTT-HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHH----HHccCHHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 6666666665321 0111123355555555554 56677665553
No 289
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=21.24 E-value=48 Score=33.53 Aligned_cols=40 Identities=25% Similarity=0.528 Sum_probs=25.9
Q ss_pred cccccccccC-----CceEEcCCCCccchHhhHHHHhccCCccccc
Q 040660 434 SSCVICLDAP-----VEGACVPCGHMAGCMSCLNEVKAKKWGCPVC 474 (487)
Q Consensus 434 ~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~C 474 (487)
..|+.|.-.. .+.+.-.|||.| |+.|...|......|.-|
T Consensus 307 r~CpkC~~~ie~~~GCnhm~CrC~~~f-cy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 307 RQCPKCKFMIELSEGCNHMTCRCGHQF-CYMCGGDWKTHNGECYEC 351 (384)
T ss_pred CcCcccceeeeecCCcceEEeeccccc-hhhcCcchhhCCccccCc
Confidence 4677776432 333434599999 999998887655445433
No 290
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=20.23 E-value=71 Score=21.32 Aligned_cols=22 Identities=27% Similarity=0.788 Sum_probs=15.6
Q ss_pred cccccccCCceEEcCCCCccchH
Q 040660 436 CVICLDAPVEGACVPCGHMAGCM 458 (487)
Q Consensus 436 C~iC~~~~~~~~~~pCgH~~~C~ 458 (487)
|..|......-+.+.|+|.+ |.
T Consensus 2 C~~C~~~~~l~~CL~C~~~~-c~ 23 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVG-CG 23 (50)
T ss_pred cccCCCcCCeEEecCCCCcc-cC
Confidence 77777655555677899988 63
Done!