Query 040660
Match_columns 487
No_of_seqs 436 out of 4359
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 17:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040660.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040660hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 2.6E-35 8.9E-40 262.1 20.2 159 9-173 6-164 (169)
2 1oy3_D Transcription factor in 100.0 1.5E-32 5.2E-37 264.0 18.2 210 3-218 5-267 (282)
3 1yyh_A HN1;, notch 1, ankyrin 100.0 5.1E-32 1.7E-36 257.1 19.0 190 3-198 53-243 (253)
4 2f8y_A Notch homolog 1, transl 100.0 2.2E-31 7.6E-36 247.2 21.9 192 4-201 22-214 (223)
5 3aji_A 26S proteasome non-ATPa 100.0 2E-31 6.7E-36 248.9 20.6 187 3-195 36-222 (231)
6 3d9h_A CDNA FLJ77766, highly s 100.0 3E-31 1E-35 256.6 22.5 205 2-214 54-260 (285)
7 2xai_A ASB-9, ankyrin repeat a 100.0 1.9E-31 6.5E-36 254.4 20.5 204 6-217 2-207 (261)
8 2y1l_E Darpin-8.4; hydrolase-i 100.0 3E-31 1E-35 235.9 20.0 159 4-168 11-169 (169)
9 3b7b_A Euchromatic histone-lys 100.0 3.1E-31 1.1E-35 248.5 21.2 191 3-199 7-198 (237)
10 1oy3_D Transcription factor in 100.0 1.8E-31 6.3E-36 256.4 18.7 178 3-186 41-266 (282)
11 2rfm_A Putative ankyrin repeat 100.0 1.1E-31 3.6E-36 243.8 15.6 160 3-168 31-190 (192)
12 1k1a_A B-cell lymphoma 3-encod 100.0 8.2E-31 2.8E-35 246.0 21.7 206 3-214 5-221 (241)
13 2rfa_A Transient receptor pote 100.0 4.3E-31 1.5E-35 246.9 19.6 188 6-199 2-218 (232)
14 1yyh_A HN1;, notch 1, ankyrin 100.0 1.1E-31 3.8E-36 254.7 15.5 206 3-214 6-228 (253)
15 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.3E-31 1.1E-35 233.4 16.9 159 5-170 3-162 (162)
16 3v31_A Ankyrin repeat family A 100.0 3.7E-31 1.3E-35 234.5 16.5 160 6-171 2-161 (167)
17 2xai_A ASB-9, ankyrin repeat a 100.0 1.1E-30 3.7E-35 249.2 20.7 179 3-189 32-210 (261)
18 1k1a_A B-cell lymphoma 3-encod 100.0 1E-30 3.5E-35 245.4 19.9 188 3-196 42-234 (241)
19 1s70_B 130 kDa myosin-binding 100.0 2.4E-30 8.2E-35 251.2 22.6 183 3-191 36-278 (299)
20 4b93_B Ankyrin repeat domain-c 100.0 3.7E-31 1.3E-35 253.6 16.5 181 3-189 48-229 (269)
21 2dzn_A Probable 26S proteasome 100.0 1.8E-30 6.2E-35 241.7 20.7 206 7-216 2-215 (228)
22 2dzn_A Probable 26S proteasome 100.0 1.9E-30 6.3E-35 241.7 20.3 181 3-189 32-219 (228)
23 3twr_A Tankyrase-2; ankyrin re 100.0 8.4E-31 2.9E-35 231.8 16.9 159 4-169 5-164 (165)
24 3b7b_A Euchromatic histone-lys 100.0 2.6E-30 8.8E-35 242.3 21.2 190 3-198 40-230 (237)
25 3ljn_A Hypothetical protein; a 100.0 6.3E-31 2.1E-35 263.0 17.7 192 3-198 16-264 (364)
26 1ikn_D Protein (I-kappa-B-alph 100.0 2.6E-31 9E-36 249.2 13.8 192 3-200 4-206 (236)
27 3f6q_A Integrin-linked protein 100.0 1.1E-30 3.7E-35 234.5 16.9 166 5-176 3-169 (179)
28 3v30_A DNA-binding protein rfx 100.0 5.3E-31 1.8E-35 234.7 14.4 163 7-175 2-165 (172)
29 1awc_B Protein (GA binding pro 100.0 2.9E-30 1E-34 225.5 18.4 152 6-164 1-152 (153)
30 3d9h_A CDNA FLJ77766, highly s 100.0 5.1E-30 1.7E-34 247.9 21.6 186 3-198 88-273 (285)
31 3hra_A Ankyrin repeat family p 100.0 3.6E-30 1.2E-34 235.0 18.7 189 4-198 2-198 (201)
32 3hra_A Ankyrin repeat family p 100.0 5.4E-30 1.9E-34 233.8 19.7 160 3-168 35-201 (201)
33 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-30 3.9E-35 244.9 15.3 164 3-172 41-211 (236)
34 4gpm_A Engineered protein OR26 100.0 3.9E-30 1.3E-34 228.6 16.3 131 3-136 33-163 (169)
35 2rfa_A Transient receptor pote 100.0 2.4E-30 8.3E-35 241.8 15.8 169 3-173 33-225 (232)
36 4b93_B Ankyrin repeat domain-c 100.0 3.2E-30 1.1E-34 247.1 17.0 209 3-216 7-225 (269)
37 3utm_A Tankyrase-1; tankyrase, 100.0 1.6E-29 5.3E-34 250.5 21.9 192 3-200 54-302 (351)
38 2f8y_A Notch homolog 1, transl 100.0 1.3E-29 4.6E-34 235.1 20.0 164 3-172 54-218 (223)
39 3aji_A 26S proteasome non-ATPa 100.0 1.4E-29 4.7E-34 236.4 19.6 191 4-200 3-194 (231)
40 1bd8_A P19INK4D CDK4/6 inhibit 100.0 1.6E-29 5.4E-34 221.3 18.2 153 7-167 2-155 (156)
41 3kea_A K1L; tropism, ANK repea 100.0 1.9E-30 6.5E-35 250.9 13.0 189 3-200 27-217 (285)
42 1n11_A Ankyrin; clathrin, BAND 100.0 2E-29 6.9E-34 258.3 21.1 208 3-216 10-219 (437)
43 1wdy_A 2-5A-dependent ribonucl 100.0 3.3E-29 1.1E-33 240.6 21.0 206 6-217 4-227 (285)
44 2etb_A Transient receptor pote 100.0 2E-30 6.8E-35 246.3 11.9 163 3-171 39-247 (256)
45 4hbd_A KN motif and ankyrin re 100.0 7.6E-30 2.6E-34 245.5 15.6 161 3-169 107-274 (276)
46 2fo1_E LIN-12 protein; beta-ba 100.0 1.2E-29 4.1E-34 254.8 17.1 191 3-199 162-367 (373)
47 1wdy_A 2-5A-dependent ribonucl 100.0 5.9E-29 2E-33 238.8 20.7 190 4-199 36-240 (285)
48 2etb_A Transient receptor pote 100.0 6.6E-30 2.3E-34 242.7 13.2 191 6-199 1-242 (256)
49 2pnn_A Transient receptor pote 100.0 5.1E-30 1.7E-34 246.0 11.8 164 4-171 51-259 (273)
50 3jxi_A Vanilloid receptor-rela 100.0 6.4E-30 2.2E-34 243.3 12.0 164 4-171 43-251 (260)
51 1n11_A Ankyrin; clathrin, BAND 100.0 8.3E-29 2.8E-33 253.7 20.4 176 6-187 211-386 (437)
52 3utm_A Tankyrase-1; tankyrase, 100.0 8.7E-29 3E-33 245.1 19.6 180 3-186 87-321 (351)
53 2fo1_E LIN-12 protein; beta-ba 100.0 6E-30 2.1E-34 257.0 11.2 191 5-199 123-334 (373)
54 2pnn_A Transient receptor pote 100.0 9.9E-30 3.4E-34 244.0 11.8 202 3-207 9-262 (273)
55 4g8k_A 2-5A-dependent ribonucl 100.0 1.4E-28 4.7E-33 243.4 20.2 190 6-198 24-259 (337)
56 3eu9_A Huntingtin-interacting 100.0 2.7E-28 9.4E-33 228.2 21.0 195 2-200 4-199 (240)
57 3ljn_A Hypothetical protein; a 100.0 4.3E-29 1.5E-33 249.7 15.9 160 6-171 83-270 (364)
58 1ycs_B 53BP2, P53BP2; ankyrin 100.0 1.1E-29 3.7E-34 239.1 10.4 164 5-175 3-169 (239)
59 3kea_A K1L; tropism, ANK repea 100.0 3.2E-29 1.1E-33 242.3 14.0 181 5-199 60-242 (285)
60 1bi7_B P16INK4A, MTS1, multipl 100.0 3.2E-29 1.1E-33 219.7 10.7 141 3-149 8-149 (156)
61 3jxi_A Vanilloid receptor-rela 100.0 4.6E-29 1.6E-33 237.3 12.0 193 3-199 1-246 (260)
62 3eu9_A Huntingtin-interacting 100.0 6.3E-28 2.2E-32 225.7 17.9 192 3-200 38-232 (240)
63 1s70_B 130 kDa myosin-binding 100.0 8.2E-28 2.8E-32 233.3 16.8 159 3-166 69-285 (299)
64 2vge_A RELA-associated inhibit 100.0 5.2E-29 1.8E-33 232.8 7.0 175 3-186 17-196 (229)
65 1d9s_A Cyclin-dependent kinase 100.0 3.6E-28 1.2E-32 207.9 11.5 127 4-134 9-136 (136)
66 3v30_A DNA-binding protein rfx 100.0 8.1E-28 2.8E-32 214.0 14.1 140 3-147 32-171 (172)
67 4g8k_A 2-5A-dependent ribonucl 99.9 5.1E-27 1.7E-31 232.1 20.7 186 3-199 121-322 (337)
68 2jab_A H10-2-G3; HER2, darpin, 99.9 2.5E-27 8.7E-32 202.5 15.7 126 4-132 11-136 (136)
69 1sw6_A Regulatory protein SWI6 99.9 7.3E-28 2.5E-32 237.4 13.3 170 3-186 127-324 (327)
70 1d9s_A Cyclin-dependent kinase 99.9 1.5E-27 5.3E-32 203.9 10.9 134 30-170 2-136 (136)
71 3t8k_A Uncharacterized protein 99.9 2.6E-28 9E-33 220.4 6.4 156 7-170 6-179 (186)
72 1n0r_A 4ANK, 4 ankyrin repeats 99.9 8.4E-27 2.9E-31 195.6 15.1 126 6-134 1-126 (126)
73 4hbd_A KN motif and ankyrin re 99.9 1.1E-27 3.7E-32 230.4 10.2 187 7-199 76-271 (276)
74 1ihb_A P18-INK4C(INK6), cyclin 99.9 2E-26 6.7E-31 202.7 13.8 128 3-134 34-162 (162)
75 2y1l_E Darpin-8.4; hydrolase-i 99.9 5.1E-26 1.8E-30 201.9 16.3 127 3-132 43-169 (169)
76 2rfm_A Putative ankyrin repeat 99.9 3.3E-26 1.1E-30 207.4 14.4 161 32-198 27-187 (192)
77 3f6q_A Integrin-linked protein 99.9 2.3E-26 7.8E-31 206.1 12.8 136 3-143 35-170 (179)
78 3twr_A Tankyrase-2; ankyrin re 99.9 3.9E-26 1.3E-30 201.6 12.9 127 3-133 38-164 (165)
79 1awc_B Protein (GA binding pro 99.9 8.6E-26 2.9E-30 197.0 14.8 123 3-128 30-152 (153)
80 2vge_A RELA-associated inhibit 99.9 2.2E-26 7.4E-31 215.0 9.9 191 23-220 1-199 (229)
81 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.4E-26 8.2E-31 216.1 9.7 148 4-157 34-193 (239)
82 3c5r_A BARD-1, BRCA1-associate 99.9 5.6E-26 1.9E-30 194.3 10.5 132 30-168 1-132 (137)
83 3c5r_A BARD-1, BRCA1-associate 99.9 1.8E-26 6.3E-31 197.3 7.4 128 3-133 6-133 (137)
84 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.7E-25 9.3E-30 194.2 14.5 124 3-131 32-155 (156)
85 3v31_A Ankyrin repeat family A 99.9 5.5E-25 1.9E-29 194.6 15.8 154 39-198 2-155 (167)
86 3aaa_C Myotrophin, protein V-1 99.9 1.4E-25 4.8E-30 188.1 11.2 113 3-118 3-115 (123)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 3.6E-25 1.2E-29 189.1 13.6 127 36-168 10-136 (136)
88 1bi7_B P16INK4A, MTS1, multipl 99.9 9.4E-26 3.2E-30 197.5 10.2 140 33-179 5-145 (156)
89 3deo_A Signal recognition part 99.9 1.4E-25 4.6E-30 202.0 11.3 140 4-167 41-181 (183)
90 3ehr_A Osteoclast-stimulating 99.9 5.8E-26 2E-30 210.8 8.8 135 4-143 70-205 (222)
91 1n0r_A 4ANK, 4 ankyrin repeats 99.9 9.7E-25 3.3E-29 182.9 14.8 126 39-170 1-126 (126)
92 3t8k_A Uncharacterized protein 99.9 2.6E-26 9E-31 207.2 5.5 129 5-136 36-181 (186)
93 1sw6_A Regulatory protein SWI6 99.9 1.7E-25 5.8E-30 220.5 10.7 194 9-216 99-323 (327)
94 3ui2_A Signal recognition part 99.9 4.7E-25 1.6E-29 208.0 12.1 143 4-170 42-185 (244)
95 2b0o_E UPLC1; arfgap, structur 99.9 1.2E-24 4E-29 211.7 13.3 140 7-157 151-298 (301)
96 3aaa_C Myotrophin, protein V-1 99.9 5.6E-24 1.9E-28 178.3 11.4 111 37-153 4-114 (123)
97 3jue_A Arfgap with coiled-coil 99.9 1E-23 3.4E-28 210.1 15.1 144 6-153 198-345 (368)
98 3lvq_E ARF-GAP with SH3 domain 99.9 1.6E-23 5.6E-28 218.0 15.7 127 7-136 132-267 (497)
99 2aja_A Ankyrin repeat family p 99.9 8.9E-26 3.1E-30 225.6 -1.6 157 4-174 89-254 (376)
100 3ehr_A Osteoclast-stimulating 99.9 4.3E-24 1.5E-28 198.2 8.2 134 36-175 69-203 (222)
101 1dcq_A PYK2-associated protein 99.9 1.4E-22 4.6E-27 194.9 15.8 125 8-134 131-263 (278)
102 3deo_A Signal recognition part 99.9 5.3E-25 1.8E-29 198.1 -2.2 137 14-157 7-155 (183)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.9 2.7E-22 9.3E-27 159.3 12.1 91 40-133 2-92 (93)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 3.7E-22 1.3E-26 158.4 11.6 93 6-101 1-93 (93)
105 1dcq_A PYK2-associated protein 99.9 2.6E-21 8.8E-26 185.9 18.2 167 2-172 61-265 (278)
106 2l6b_A NR1C; ankyrin, consensu 99.9 2E-22 6.9E-27 166.6 7.6 107 36-147 5-111 (115)
107 2l6b_A NR1C; ankyrin, consensu 99.9 3.2E-22 1.1E-26 165.3 8.0 109 2-113 4-112 (115)
108 2b0o_E UPLC1; arfgap, structur 99.9 7.3E-21 2.5E-25 184.9 16.3 127 40-172 151-286 (301)
109 3lvq_E ARF-GAP with SH3 domain 99.8 6E-21 2.1E-25 198.6 14.3 135 40-178 132-273 (497)
110 3ui2_A Signal recognition part 99.8 2.7E-21 9.4E-26 182.1 10.0 134 10-153 18-152 (244)
111 3jue_A Arfgap with coiled-coil 99.8 5.5E-21 1.9E-25 190.3 12.5 132 36-170 195-326 (368)
112 2aja_A Ankyrin repeat family p 99.8 5.2E-22 1.8E-26 198.4 3.9 171 8-197 66-244 (376)
113 2zgd_A 3 repeat synthetic anky 99.8 4.9E-19 1.7E-23 145.1 11.7 91 35-128 19-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 4.4E-19 1.5E-23 145.3 10.2 90 3-95 20-109 (110)
115 2vje_A E3 ubiquitin-protein li 99.5 1.2E-14 4.1E-19 105.8 3.4 55 432-486 7-63 (64)
116 2vje_B MDM4 protein; proto-onc 99.5 1.6E-14 5.6E-19 104.7 3.7 55 432-486 6-62 (63)
117 2ea5_A Cell growth regulator w 99.4 7.3E-14 2.5E-18 102.7 4.1 53 430-486 12-64 (68)
118 2yho_A E3 ubiquitin-protein li 99.2 1.5E-12 5.1E-17 98.8 2.2 51 432-486 17-67 (79)
119 2d8t_A Dactylidin, ring finger 99.2 1.1E-11 3.9E-16 92.2 4.8 49 431-480 13-61 (71)
120 4ic3_A E3 ubiquitin-protein li 99.2 4.5E-12 1.5E-16 95.1 2.2 52 431-486 22-73 (74)
121 2ecg_A Baculoviral IAP repeat- 99.2 4.4E-12 1.5E-16 95.5 1.1 50 432-486 24-74 (75)
122 2csy_A Zinc finger protein 183 99.2 2.7E-11 9.2E-16 92.7 5.6 51 430-481 12-62 (81)
123 2ecn_A Ring finger protein 141 99.2 1.4E-11 4.7E-16 91.5 3.6 54 431-486 13-66 (70)
124 2djb_A Polycomb group ring fin 99.1 3.4E-11 1.2E-15 89.9 4.7 51 430-481 12-63 (72)
125 3ng2_A RNF4, snurf, ring finge 99.1 1.3E-11 4.5E-16 91.9 2.0 54 431-485 8-70 (71)
126 2ea6_A Ring finger protein 4; 99.1 2.7E-11 9.2E-16 89.6 3.5 49 431-480 13-68 (69)
127 2ysl_A Tripartite motif-contai 99.1 1E-10 3.6E-15 87.5 6.1 50 430-480 17-69 (73)
128 2xeu_A Ring finger protein 4; 99.1 3E-11 1E-15 87.9 2.5 52 434-486 4-64 (64)
129 2yur_A Retinoblastoma-binding 99.1 7.5E-11 2.6E-15 88.5 4.5 50 429-479 11-63 (74)
130 1chc_A Equine herpes virus-1 r 99.1 4.5E-11 1.5E-15 88.2 2.9 52 433-485 5-57 (68)
131 2ecy_A TNF receptor-associated 99.1 1E-10 3.6E-15 85.6 4.2 49 431-480 13-62 (66)
132 4ayc_A E3 ubiquitin-protein li 99.0 6E-11 2E-15 100.7 3.3 49 433-482 53-101 (138)
133 1x4j_A Ring finger protein 38; 99.0 8.7E-11 3E-15 88.4 3.8 49 431-480 21-72 (75)
134 2kiz_A E3 ubiquitin-protein li 99.0 1.5E-10 5.1E-15 85.6 4.9 51 431-482 12-65 (69)
135 2ecw_A Tripartite motif-contai 99.0 2.6E-10 8.7E-15 88.1 5.9 49 430-479 16-70 (85)
136 2ect_A Ring finger protein 126 99.0 1.3E-10 4.3E-15 88.3 4.0 50 430-480 12-64 (78)
137 2ep4_A Ring finger protein 24; 99.0 1.2E-10 4.1E-15 87.4 3.3 54 430-484 12-68 (74)
138 2ct2_A Tripartite motif protei 99.0 2.9E-10 9.8E-15 88.5 5.1 49 430-479 12-67 (88)
139 2ecm_A Ring finger and CHY zin 99.0 1.8E-10 6E-15 81.0 3.3 46 433-479 5-54 (55)
140 2ecv_A Tripartite motif-contai 99.0 2.2E-10 7.7E-15 88.4 3.9 49 430-479 16-70 (85)
141 1iym_A EL5; ring-H2 finger, ub 99.0 2.3E-10 7.9E-15 80.4 3.3 47 432-479 4-54 (55)
142 2egp_A Tripartite motif-contai 99.0 1.3E-10 4.3E-15 88.5 2.1 49 430-479 9-64 (79)
143 1t1h_A Gspef-atpub14, armadill 99.0 3.4E-10 1.2E-14 85.9 4.4 48 431-479 6-54 (78)
144 2l0b_A E3 ubiquitin-protein li 99.0 3.2E-10 1.1E-14 88.7 4.0 49 431-480 38-89 (91)
145 2ysj_A Tripartite motif-contai 99.0 8E-10 2.7E-14 80.0 5.6 44 430-474 17-63 (63)
146 1e4u_A Transcriptional repress 98.9 3.4E-10 1.2E-14 85.3 3.4 54 431-485 9-67 (78)
147 3ztg_A E3 ubiquitin-protein li 98.9 4.9E-10 1.7E-14 87.9 4.3 49 430-479 10-61 (92)
148 3lrq_A E3 ubiquitin-protein li 98.9 4.1E-10 1.4E-14 89.7 3.0 48 431-479 20-69 (100)
149 2ecj_A Tripartite motif-contai 98.9 1E-09 3.5E-14 78.0 4.5 44 430-474 12-58 (58)
150 1g25_A CDK-activating kinase a 98.9 6.9E-10 2.4E-14 80.9 3.4 46 433-479 3-54 (65)
151 1bor_A Transcription factor PM 98.9 2.1E-10 7.3E-15 80.8 -0.0 45 431-479 4-48 (56)
152 2y43_A E3 ubiquitin-protein li 98.9 8.9E-10 3.1E-14 87.7 3.1 49 431-480 20-69 (99)
153 3fl2_A E3 ubiquitin-protein li 98.9 9.2E-10 3.1E-14 91.5 3.3 48 432-480 51-99 (124)
154 2ckl_A Polycomb group ring fin 98.8 1.5E-09 5E-14 87.9 4.1 49 431-480 13-62 (108)
155 2kr4_A Ubiquitin conjugation f 98.8 2.5E-09 8.7E-14 82.2 5.0 48 431-479 12-59 (85)
156 1wgm_A Ubiquitin conjugation f 98.8 5.4E-09 1.9E-13 82.5 6.2 48 431-479 20-68 (98)
157 3l11_A E3 ubiquitin-protein li 98.8 9.7E-10 3.3E-14 90.1 1.9 49 431-480 13-62 (115)
158 2y1n_A E3 ubiquitin-protein li 98.8 2E-09 6.8E-14 105.1 4.1 50 434-484 333-383 (389)
159 1z6u_A NP95-like ring finger p 98.8 1.9E-09 6.4E-14 92.4 3.2 48 432-480 77-125 (150)
160 2kre_A Ubiquitin conjugation f 98.8 1E-08 3.6E-13 81.2 7.1 48 431-479 27-74 (100)
161 3t6p_A Baculoviral IAP repeat- 98.8 1.4E-09 4.6E-14 105.8 1.8 51 432-486 294-344 (345)
162 3hct_A TNF receptor-associated 98.8 4E-09 1.4E-13 86.7 4.2 50 430-480 15-65 (118)
163 2ckl_B Ubiquitin ligase protei 98.7 3.1E-09 1.1E-13 93.0 3.0 48 431-479 52-101 (165)
164 1v87_A Deltex protein 2; ring- 98.7 4.4E-09 1.5E-13 86.0 3.6 46 434-480 26-94 (114)
165 1jm7_A BRCA1, breast cancer ty 98.7 2.4E-09 8E-14 87.3 1.8 47 432-479 20-69 (112)
166 3knv_A TNF receptor-associated 98.7 5E-09 1.7E-13 88.7 2.8 48 430-478 28-76 (141)
167 2ecl_A Ring-box protein 2; RNF 98.7 8.1E-09 2.8E-13 78.6 3.5 45 434-479 16-75 (81)
168 4ap4_A E3 ubiquitin ligase RNF 98.7 6.9E-09 2.4E-13 87.2 3.2 52 433-485 7-67 (133)
169 1rmd_A RAG1; V(D)J recombinati 98.7 6.8E-09 2.3E-13 85.1 3.0 48 432-480 22-70 (116)
170 4ap4_A E3 ubiquitin ligase RNF 98.6 9.4E-09 3.2E-13 86.4 2.8 53 432-485 71-132 (133)
171 1jm7_B BARD1, BRCA1-associated 98.6 9.9E-09 3.4E-13 84.2 0.8 46 431-479 20-66 (117)
172 3dpl_R Ring-box protein 1; ubi 98.5 5.8E-08 2E-12 77.5 3.8 46 433-479 37-100 (106)
173 2c2l_A CHIP, carboxy terminus 98.5 7.2E-08 2.5E-12 91.9 3.9 47 432-479 207-254 (281)
174 3hcs_A TNF receptor-associated 98.4 8.5E-08 2.9E-12 84.2 3.4 50 430-480 15-65 (170)
175 2yu4_A E3 SUMO-protein ligase 98.4 7.9E-08 2.7E-12 75.3 2.8 45 432-477 6-59 (94)
176 2f42_A STIP1 homology and U-bo 98.4 1.3E-07 4.3E-12 82.6 4.2 49 431-480 104-153 (179)
177 4a0k_B E3 ubiquitin-protein li 98.3 1.1E-07 3.9E-12 76.9 0.2 45 434-479 49-111 (117)
178 2d8s_A Cellular modulator of i 98.2 8.1E-07 2.8E-11 67.0 2.8 48 432-480 14-70 (80)
179 2bay_A PRE-mRNA splicing facto 98.1 1.1E-06 3.7E-11 62.5 2.6 51 434-485 4-57 (61)
180 3htk_C E3 SUMO-protein ligase 98.1 1.4E-06 4.7E-11 79.8 3.8 47 432-479 180-231 (267)
181 1wim_A KIAA0161 protein; ring 97.9 2.8E-06 9.7E-11 66.4 2.3 44 433-477 5-61 (94)
182 2ct0_A Non-SMC element 1 homol 97.7 5.8E-05 2E-09 55.5 5.5 49 431-480 13-64 (74)
183 3vk6_A E3 ubiquitin-protein li 97.7 4.1E-05 1.4E-09 58.6 4.4 49 435-484 3-53 (101)
184 1vyx_A ORF K3, K3RING; zinc-bi 97.4 9.5E-05 3.3E-09 52.1 2.9 48 431-479 4-58 (60)
185 3k1l_B Fancl; UBC, ring, RWD, 97.2 7.4E-05 2.5E-09 70.7 1.1 49 431-480 306-373 (381)
186 2ko5_A Ring finger protein Z; 96.5 0.00098 3.4E-08 49.9 2.1 48 433-483 28-76 (99)
187 2cs3_A Protein C14ORF4, MY039 93.6 0.043 1.5E-06 39.6 2.8 32 433-465 15-50 (93)
188 3nw0_A Non-structural maintena 92.4 0.099 3.4E-06 47.7 4.2 46 433-479 180-228 (238)
189 2jun_A Midline-1; B-BOX, TRIM, 91.6 0.074 2.5E-06 41.4 2.0 30 434-464 4-36 (101)
190 2fiy_A Protein FDHE homolog; F 70.9 0.71 2.4E-05 43.6 -0.6 44 434-477 183-231 (309)
191 3ql9_A Transcriptional regulat 69.7 3.8 0.00013 33.1 3.6 47 431-478 55-112 (129)
192 3m62_A Ubiquitin conjugation f 64.9 5.6 0.00019 43.2 4.8 50 430-480 888-938 (968)
193 2lri_C Autoimmune regulator; Z 64.5 4.8 0.00016 28.3 2.9 43 434-477 13-59 (66)
194 3i2d_A E3 SUMO-protein ligase 62.7 3.6 0.00012 39.6 2.5 45 434-479 250-299 (371)
195 2lbm_A Transcriptional regulat 59.3 8 0.00027 31.8 3.7 46 431-477 61-117 (142)
196 4fo9_A E3 SUMO-protein ligase 58.2 4.7 0.00016 38.6 2.5 45 434-479 216-265 (360)
197 1weo_A Cellulose synthase, cat 58.0 8.1 0.00028 28.6 3.1 45 434-479 17-69 (93)
198 1zbd_B Rabphilin-3A; G protein 56.9 1 3.5E-05 36.9 -2.1 43 434-477 56-107 (134)
199 1wil_A KIAA1045 protein; ring 55.3 15 0.00053 26.9 4.1 42 432-475 14-74 (89)
200 2yql_A PHD finger protein 21A; 54.3 2.5 8.6E-05 28.6 -0.1 45 431-476 7-55 (56)
201 2zet_C Melanophilin; complex, 51.3 2 6.9E-05 36.0 -1.2 44 433-477 68-117 (153)
202 2d8v_A Zinc finger FYVE domain 50.5 9.1 0.00031 26.6 2.2 33 431-465 6-39 (67)
203 1mm2_A MI2-beta; PHD, zinc fin 49.3 4.5 0.00015 27.9 0.5 47 431-478 7-57 (61)
204 1z60_A TFIIH basal transcripti 48.8 9 0.00031 26.2 2.0 40 434-474 16-58 (59)
205 2l5u_A Chromodomain-helicase-D 46.7 10 0.00034 26.1 2.0 46 431-477 9-58 (61)
206 3mkq_B Coatomer subunit alpha; 46.2 73 0.0025 27.1 7.8 132 4-165 5-138 (177)
207 2csz_A Synaptotagmin-like prot 40.5 3.1 0.00011 30.0 -1.4 47 431-478 23-74 (76)
208 3u5n_A E3 ubiquitin-protein li 38.5 6 0.0002 34.9 -0.3 47 431-478 5-55 (207)
209 2e6r_A Jumonji/ARID domain-con 37.3 7.5 0.00026 29.3 0.1 46 431-477 14-66 (92)
210 3zrh_A Ubiquitin thioesterase 36.3 56 0.0019 31.7 6.0 49 13-62 28-90 (454)
211 1weu_A Inhibitor of growth fam 35.4 54 0.0019 24.5 4.6 44 432-478 35-86 (91)
212 2k16_A Transcription initiatio 34.8 13 0.00043 26.7 1.0 51 430-481 15-72 (75)
213 1fp0_A KAP-1 corepressor; PHD 31.6 17 0.00057 27.1 1.2 46 431-477 23-72 (88)
214 2l43_A N-teminal domain from h 31.1 27 0.00091 26.0 2.3 48 431-479 23-77 (88)
215 2yt5_A Metal-response element- 30.1 12 0.00041 26.0 0.2 46 432-478 5-62 (66)
216 2pv0_B DNA (cytosine-5)-methyl 29.6 44 0.0015 32.3 4.1 47 431-478 91-149 (386)
217 1xwh_A Autoimmune regulator; P 29.0 11 0.00038 26.3 -0.1 46 432-478 7-56 (66)
218 1wev_A Riken cDNA 1110020M19; 28.3 4.9 0.00017 30.1 -2.3 48 432-480 15-75 (88)
219 2a20_A Regulating synaptic mem 28.3 4.8 0.00016 27.3 -2.0 43 431-477 7-60 (62)
220 1gp8_A Protein (scaffolding pr 28.1 39 0.0014 20.6 2.2 19 10-28 16-34 (40)
221 3a1b_A DNA (cytosine-5)-methyl 27.7 47 0.0016 27.6 3.4 47 431-478 77-135 (159)
222 3pwf_A Rubrerythrin; non heme 24.3 37 0.0012 28.7 2.3 15 470-484 155-169 (170)
223 1z2q_A LM5-1; membrane protein 23.7 76 0.0026 23.1 3.7 31 432-463 20-54 (84)
224 1m3v_A FLIN4, fusion of the LI 23.4 38 0.0013 26.6 2.1 46 434-480 33-81 (122)
225 1wfk_A Zinc finger, FYVE domai 23.4 38 0.0013 25.1 2.0 30 433-463 9-42 (88)
226 2gmg_A Hypothetical protein PF 23.2 18 0.0006 27.9 0.0 28 445-478 67-94 (105)
227 4rxn_A Rubredoxin; electron tr 23.0 35 0.0012 22.8 1.5 17 468-484 36-52 (54)
228 1joc_A EEA1, early endosomal a 22.9 32 0.0011 27.4 1.6 30 434-464 70-103 (125)
229 1yk4_A Rubredoxin, RD; electro 22.4 42 0.0014 22.2 1.8 16 469-484 36-51 (52)
230 2lv9_A Histone-lysine N-methyl 22.2 20 0.0007 27.2 0.2 42 434-477 29-76 (98)
231 2kdx_A HYPA, hydrogenase/ureas 22.1 27 0.00094 27.5 1.0 32 443-481 71-103 (119)
232 3t7l_A Zinc finger FYVE domain 21.7 39 0.0013 25.1 1.7 46 433-479 20-75 (90)
233 1y02_A CARP2, FYVE-ring finger 21.5 13 0.00046 29.5 -1.0 43 434-477 20-66 (120)
234 2puy_A PHD finger protein 21A; 20.6 14 0.00049 25.1 -0.9 44 434-478 6-53 (60)
235 1wen_A Inhibitor of growth fam 20.5 87 0.003 22.0 3.3 44 432-479 15-67 (71)
236 2kn9_A Rubredoxin; metalloprot 20.3 45 0.0015 24.3 1.7 17 468-484 60-76 (81)
237 3c5k_A HD6, histone deacetylas 20.1 46 0.0016 25.8 1.9 23 434-457 25-47 (109)
238 2yw8_A RUN and FYVE domain-con 20.1 46 0.0016 24.2 1.8 46 433-479 19-74 (82)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=2.6e-35 Score=262.09 Aligned_cols=159 Identities=33% Similarity=0.426 Sum_probs=150.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCC
Q 040660 9 ELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGL 88 (487)
Q Consensus 9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~ 88 (487)
+.|+.||+.|+.++|+.||++|+++|.+|..|+||||+|+.. ++.+++++|++.|++++.+ |..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence 579999999999999999999999999999999999999999 9999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 89 ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 89 ~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+++|
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999 99999999999 999999999999999999
Q ss_pred CCCCC
Q 040660 169 SRNPT 173 (487)
Q Consensus 169 ~~~~~ 173 (487)
++++.
T Consensus 160 A~ie~ 164 (169)
T 4gpm_A 160 GWLEH 164 (169)
T ss_dssp -----
T ss_pred CCcCC
Confidence 99754
No 2
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.5e-32 Score=264.04 Aligned_cols=210 Identities=22% Similarity=0.173 Sum_probs=182.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG---LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTP 79 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp 79 (487)
.|++|+||||+|++.|+.++|++|+++|++ ++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tp 81 (282)
T 1oy3_D 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGHTA 81 (282)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSCCH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 588999999999999999999999999988 888999999999999999 9999999999999999998 8999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCC-----------------------------------------------cccccCCCCCH
Q 040660 80 LHHAAKRGLERTVKLLLSYGAN-----------------------------------------------ALVLNDDCQTP 112 (487)
Q Consensus 80 Lh~Aa~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~Tp 112 (487)
||+|+..|+.+++++|+++|++ ++.+|..|+||
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~ 161 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP 161 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCH
Confidence 9999999999999999998755 77889999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCccccccccc-CCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccch
Q 040660 113 LEVARAKGFTNVVRAIENHICIFSGWLREL-YGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARP 191 (487)
Q Consensus 113 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
||+|+..|+.++|++|+++|++++ ..+. .|.|||| +|+..++.+++++|+.+|++.+.++..+..+++.+...+..
T Consensus 162 L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~ 238 (282)
T 1oy3_D 162 LHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNP 238 (282)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCc
Confidence 999999999999999999999998 7774 5999999 89999999999999999999999998899999999888888
Q ss_pred HHHHHHH--hcccCCCCCCCCCCceeeec
Q 040660 192 RMVIALW--KANLEEPKFQHSDPSVTIVD 218 (487)
Q Consensus 192 ~~~~~l~--~~~~~~~~~~~~~~~~~i~~ 218 (487)
..+..|. ++.+...+..+.+|+.....
T Consensus 239 ~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~ 267 (282)
T 1oy3_D 239 ILARLLRAHGAPEPEDGGDKLSPCSSSGS 267 (282)
T ss_dssp HHHHHHHHTTCCCCCCC------------
T ss_pred HHHHHHHHcCCCcCcCCCcccccccccCC
Confidence 8888776 45566666677777765553
No 3
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.1e-32 Score=257.13 Aligned_cols=190 Identities=21% Similarity=0.119 Sum_probs=180.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC-CccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpLh 81 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|+ +++.. |..|.||||
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~ 129 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLI 129 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHHH
Confidence 378899999999999999999999999999999999999999999999 99999999999997 88887 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~v 206 (253)
T 1yyh_A 130 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETA 206 (253)
T ss_dssp HHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999 89999999999
Q ss_pred HHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
++|+++|++.+.++..+..++..+...+....+..+.
T Consensus 207 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999999988888888888888777777554
No 4
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.98 E-value=2.2e-31 Score=247.17 Aligned_cols=192 Identities=21% Similarity=0.125 Sum_probs=181.4
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC-CccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpLh~ 82 (487)
|.+|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.++ +++.. +..|.||||+
T Consensus 22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~~ 98 (223)
T 2f8y_A 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLIL 98 (223)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CTTCCCHHHH
T ss_pred CCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCCCcHHHH
Confidence 68899999999999999999999999999999999999999999999 99999999999987 88887 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 99 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 175 (223)
T 2f8y_A 99 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETAK 175 (223)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHHH
T ss_pred HHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999 899999999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHHHHHhcc
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKAN 201 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (487)
+|+++|++.+..+..+..++..+...+....+..|....
T Consensus 176 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g 214 (223)
T 2f8y_A 176 VLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYN 214 (223)
T ss_dssp HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcC
Confidence 999999999988888888888888888888887766533
No 5
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.98 E-value=2e-31 Score=248.91 Aligned_cols=187 Identities=22% Similarity=0.168 Sum_probs=162.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 112 (231)
T 3aji_A 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTPLHY 112 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 467888999999999999999999999999998899999999999999 8899999999999998887 8889999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.++++
T Consensus 113 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 189 (231)
T 3aji_A 113 AASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVEEAK 189 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999888 88889999999 888888999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHH
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVI 195 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (487)
+|+++|++.+.++..+..+++.+........+.
T Consensus 190 ~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~ 222 (231)
T 3aji_A 190 FLVTQGASIYIENKEEKTPLQVAKGGLGLILKR 222 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHH
Confidence 999999988888777777777766544444443
No 6
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.98 E-value=3e-31 Score=256.55 Aligned_cols=205 Identities=20% Similarity=0.192 Sum_probs=183.8
Q ss_pred CCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 2 GLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
+.|.+|+||||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||
T Consensus 54 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~t~L~ 130 (285)
T 3d9h_A 54 GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTPLF 130 (285)
T ss_dssp SSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCCCHHH
T ss_pred CCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCCHHH
Confidence 4578899999999999999999999999999999999999999999999 9999999999999999998 999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
+|+..|+.+++++|++.|++++..+ +|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~~~v 206 (285)
T 3d9h_A 131 NACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACV 206 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHH
T ss_pred HHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHHHH
Confidence 9999999999999999999998654 59999999999999999999999999999 99999999999 99999999999
Q ss_pred HHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCce
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSV 214 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 214 (487)
++|++.|++.+. +..+..+++.+...+....+..|... .++..+..+.+++.
T Consensus 207 ~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~ 260 (285)
T 3d9h_A 207 KKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE 260 (285)
T ss_dssp HHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred HHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence 999999999875 55778888888888888888777643 33334444444444
No 7
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.98 E-value=1.9e-31 Score=254.43 Aligned_cols=204 Identities=20% Similarity=0.199 Sum_probs=178.8
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHH
Confidence 589999999999999999999999999999999999999999999 9999999999999999988 8999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
.|+.+++++|+++|++++. +.+|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACVKKLL 154 (261)
T ss_dssp HTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--cCCCCCCCHHH-HHHHhCCHHHHHHHH
Confidence 9999999999999999885 4569999999999999999999999999999 89999999999 899999999999999
Q ss_pred cCCCCCCCCCCccchhccccccccchHHHHHHHh--cccCCCCCCCCCCceeee
Q 040660 166 PTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK--ANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 166 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~i~ 217 (487)
+.|++.+. +..+..+++.+...+....+..|.. +.++..+..+.+|+.+..
T Consensus 155 ~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpl~~A~ 207 (261)
T 2xai_A 155 ESGADVNQ-GKGQDSPLHAVARTASEELACLLMDFGADTQAKNAEGKRPVELVP 207 (261)
T ss_dssp HHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCGGGGSC
T ss_pred HcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCChhhhcc
Confidence 99999875 5577778888777777777776653 444555556666665544
No 8
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.98 E-value=3e-31 Score=235.87 Aligned_cols=159 Identities=23% Similarity=0.303 Sum_probs=152.4
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
...+.++|++|++.|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence 34678999999999999999999999999999999999999999999 9999999999999999998 89999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA 163 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~ 163 (487)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.+++++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAEI 164 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999 8999999999999
Q ss_pred hhcCC
Q 040660 164 VLPTG 168 (487)
Q Consensus 164 Ll~~g 168 (487)
|++.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 99876
No 9
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.98 E-value=3.1e-31 Score=248.53 Aligned_cols=191 Identities=23% Similarity=0.227 Sum_probs=182.0
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|++|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+.. |+.+++++|++.|++++.+ +..|.||||+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 83 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGSTCLHL 83 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSCCHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCCcHHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999999999988 8999999999
Q ss_pred HHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 83 AAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
|+..|+.+++++|++.| .+++..|..|+||||+|+..|+.+++++|+++|++++ .++..|.|||| .|...++.+++
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~~ 160 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSGCVDIA 160 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCCCHHHH
Confidence 99999999999999999 8999999999999999999999999999999999999 99999999999 89999999999
Q ss_pred HHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
++|++.|++.+..+..+..+++.+...+....+..|..
T Consensus 161 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 198 (237)
T 3b7b_A 161 EILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLS 198 (237)
T ss_dssp HHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHH
Confidence 99999999999988888888888888888888887764
No 10
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=1.8e-31 Score=256.43 Aligned_cols=178 Identities=21% Similarity=0.138 Sum_probs=158.8
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC----------------
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK---------------- 66 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~---------------- 66 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.. |+.+++++|+++|++
T Consensus 41 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~ 119 (282)
T 1oy3_D 41 QNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQSQDC 119 (282)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC-----------
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhccccc
Confidence 467899999999999999999999999999999999999999999999 999999999998865
Q ss_pred -------------------------------ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCC-CCCHHH
Q 040660 67 -------------------------------VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD-CQTPLE 114 (487)
Q Consensus 67 -------------------------------~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~-g~TpL~ 114 (487)
++.+ |..|.||||+|+..|+.++|++|+++|++++..+.. |+||||
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~ 197 (282)
T 1oy3_D 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLH 197 (282)
T ss_dssp ------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHH
T ss_pred CcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHH
Confidence 5555 889999999999999999999999999999999864 999999
Q ss_pred HHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660 115 VARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL 186 (487)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 186 (487)
+|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+++|++.+.++..+...+..+.
T Consensus 198 ~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~ 266 (282)
T 1oy3_D 198 LAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266 (282)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC-----------
T ss_pred HHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccC
Confidence 9999999999999999999999 99999999999 999999999999999999999888866665555443
No 11
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.97 E-value=1.1e-31 Score=243.81 Aligned_cols=160 Identities=26% Similarity=0.217 Sum_probs=155.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+
T Consensus 31 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 107 (192)
T 2rfm_A 31 RDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKTPLMW 107 (192)
T ss_dssp CCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence 478899999999999999999999999999999999999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.++++
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~v~ 184 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQEVIK 184 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999 999999999999
Q ss_pred HhhcCC
Q 040660 163 AVLPTG 168 (487)
Q Consensus 163 ~Ll~~g 168 (487)
+|++.|
T Consensus 185 ~Ll~~~ 190 (192)
T 2rfm_A 185 IFTEVR 190 (192)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 998754
No 12
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=8.2e-31 Score=246.04 Aligned_cols=206 Identities=21% Similarity=0.187 Sum_probs=184.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCR----DGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
.|++|+|+||+|++.|+.++|++|++ .|.+++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.|
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t 81 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHGQT 81 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCCCC
Confidence 58899999999999999999999997 7899999999999999999999 9999999999999999998 899999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCC----CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHhh
Q 040660 79 PLHHAAKRGLERTVKLLLSYGA----NALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLAP 153 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga----~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a~ 153 (487)
|||+|+..|+.+++++|++.++ +++..|..|+||||+|+..|+.+++++|+++|++++ ..+ ..|.|||| +|+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~A~ 158 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-HAV 158 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-HHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-HHH
Confidence 9999999999999999999987 889999999999999999999999999999999998 777 88999999 899
Q ss_pred hcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCce
Q 040660 154 QLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSV 214 (487)
Q Consensus 154 ~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 214 (487)
..++.+++++|+++|++.+..+..+..+++.+...+....+..|... .++..+..+.+|+.
T Consensus 159 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~ 221 (241)
T 1k1a_A 159 ENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM 221 (241)
T ss_dssp HTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence 99999999999999999999888888888888888888888777643 33333344444444
No 13
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=4.3e-31 Score=246.93 Aligned_cols=188 Identities=18% Similarity=0.136 Sum_probs=172.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCc-----cccCCCCCCCcH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV-----DAYRPGRHGGTP 79 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~-----~~~~~d~~g~Tp 79 (487)
.|+||||+|++.|+.++|+.|++. |++++.+|..|+||||+|+.. |+.+++++|++.|+++ +.. |..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence 489999999999999999999998 999999999999999999999 9999999999999987 444 7899999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCcccccC-------------CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCC
Q 040660 80 LHHAAKRGLERTVKLLLSYGANALVLND-------------DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPG 146 (487)
Q Consensus 80 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t 146 (487)
||+|+..|+.+++++|+++|++++..+. .|+||||+|+..|+.++|++|+++|++++ .+|..|.|
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t 156 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT 156 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence 9999999999999999999999998876 79999999999999999999999999999 99999999
Q ss_pred HHHHHhhhcCCHHHH----HHhhcCCCCC------CCCCCccchhccccccccchHHHHHHHh
Q 040660 147 FLELLAPQLLSRKVW----VAVLPTGSRN------PTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 147 ~L~~~a~~~~~~~~~----~~Ll~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
||| +|+..++.+++ ++|+..|++. +.++..+..+++.+...+....+..|..
T Consensus 157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~ 218 (232)
T 2rfa_A 157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218 (232)
T ss_dssp HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999 89999999888 9999999987 3666677788888887777777776654
No 14
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=1.1e-31 Score=254.73 Aligned_cols=206 Identities=20% Similarity=0.180 Sum_probs=155.9
Q ss_pred CCCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCcc
Q 040660 3 LQQSKEELLYQQVNYG-------------NVEGIKALCRDGAGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVD 68 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g-------------~~~~v~~Ll~~g~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~ 68 (487)
.|++|+||||+|+..| +.+++++|++.|++++. .|..|.||||+|+.. |+.+++++|+++|++++
T Consensus 6 ~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~ 84 (253)
T 1yyh_A 6 RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEASADAN 84 (253)
T ss_dssp ----------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTT
T ss_pred CCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCC
Confidence 4788999999999987 89999999999999865 589999999999999 99999999999999999
Q ss_pred ccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCC-CcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH
Q 040660 69 AYRPGRHGGTPLHHAAKRGLERTVKLLLSYGA-NALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF 147 (487)
Q Consensus 69 ~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga-~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~ 147 (487)
.+ |..|.||||+|+..|+.+++++|++.|+ +++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.||
T Consensus 85 ~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~~g~t~ 160 (253)
T 1yyh_A 85 IQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDDLGKSA 160 (253)
T ss_dssp CC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCTTSCBH
T ss_pred CC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCCCCCCH
Confidence 98 9999999999999999999999999997 899999999999999999999999999999999999 999999999
Q ss_pred HHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCce
Q 040660 148 LELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSV 214 (487)
Q Consensus 148 L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~ 214 (487)
|| +|+..++.+++++|+++|++.+.++..+..+++.+...+....+..|... .++..+..+.+|+.
T Consensus 161 L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 228 (253)
T 1yyh_A 161 LH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD 228 (253)
T ss_dssp HH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred HH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence 99 89999999999999999999999998889999988888888888777643 33333334444443
No 15
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=3.3e-31 Score=233.38 Aligned_cols=159 Identities=23% Similarity=0.302 Sum_probs=150.4
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
+...|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++.+ |..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence 467899999999999999999999999999999999999999877 8899999999999999998 999999999999
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc-ccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI-FSGWLRELYGPGFLELLAPQLLSRKVWVA 163 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~-~~~~~~d~~G~t~L~~~a~~~~~~~~~~~ 163 (487)
..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|++ ++ .+|..|.|||| +|...++.+++++
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL 155 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 57 89999999999 9999999999999
Q ss_pred hhcCCCC
Q 040660 164 VLPTGSR 170 (487)
Q Consensus 164 Ll~~g~~ 170 (487)
|+++|++
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999985
No 16
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=3.7e-31 Score=234.55 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=154.8
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+|.|+||+|+..|+.++|++|++.|.+++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence 578999999999999999999999999999999999999999999 9999999999999999998 8999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999 999999999999999
Q ss_pred cCCCCC
Q 040660 166 PTGSRN 171 (487)
Q Consensus 166 ~~g~~~ 171 (487)
+++.+.
T Consensus 156 ~~~~~~ 161 (167)
T 3v31_A 156 SHLLKL 161 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 17
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=249.19 Aligned_cols=179 Identities=21% Similarity=0.251 Sum_probs=169.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++. +..|.||||+
T Consensus 32 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~ 107 (261)
T 2xai_A 32 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQP---ESDLASPIHE 107 (261)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSC---SCTTCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCC---CCCCCCHHHH
Confidence 467899999999999999999999999999999999999999999999 999999999999999986 5679999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ . +..|.|||| +|+..++.++++
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~Lh-~A~~~~~~~~v~ 183 (261)
T 2xai_A 108 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLH-AVARTASEELAC 183 (261)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--C-CBTTBCHHH-HHHHHTCHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--C-CCCCCChHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 4 889999999 899999999999
Q ss_pred HhhcCCCCCCCCCCccchhcccccccc
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDA 189 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+|+++|++.+.++..+..++..+....
T Consensus 184 ~Ll~~gad~~~~d~~g~tpl~~A~~~~ 210 (261)
T 2xai_A 184 LLMDFGADTQAKNAEGKRPVELVPPES 210 (261)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSCTTC
T ss_pred HHHHcCCCCCCcCCCCCChhhhccccc
Confidence 999999999999988888888877533
No 18
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=1e-30 Score=245.44 Aligned_cols=188 Identities=19% Similarity=0.175 Sum_probs=175.6
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC----CccccCCCCCCCc
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA----KVDAYRPGRHGGT 78 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga----~~~~~~~d~~g~T 78 (487)
.|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|++.++ +++.. |..|.|
T Consensus 42 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~--~~~g~t 118 (241)
T 1k1a_A 42 YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR--NYDGLT 118 (241)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC--CTTSCC
T ss_pred ccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc--CcCCCc
Confidence 467799999999999999999999999999999999999999999999 99999999999987 77777 899999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660 79 PLHHAAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS 157 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~ 157 (487)
|||+|+..|+.+++++|++.|++++..+ ..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++
T Consensus 119 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~ 195 (241)
T 1k1a_A 119 ALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-SASGRGL 195 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCC
Confidence 9999999999999999999999999999 899999999999999999999999999999 99999999999 8999999
Q ss_pred HHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHH
Q 040660 158 RKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIA 196 (487)
Q Consensus 158 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (487)
.+++++|+++|++.+.++..+..+++.+...+....+..
T Consensus 196 ~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~ 234 (241)
T 1k1a_A 196 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRG 234 (241)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC
T ss_pred HHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhh
Confidence 999999999999999888888888888876655555543
No 19
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=2.4e-30 Score=251.22 Aligned_cols=183 Identities=23% Similarity=0.267 Sum_probs=160.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
++.+|.|+||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~ 112 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA 112 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence 355789999999999999999999999999999999999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccC-------------------------------------------------------
Q 040660 83 AAKRGLERTVKLLLSYGANALVLND------------------------------------------------------- 107 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~------------------------------------------------------- 107 (487)
|+..|+.++|++|+++|++++..|.
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999999887664
Q ss_pred -----CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhc
Q 040660 108 -----DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAI 182 (487)
Q Consensus 108 -----~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~ 182 (487)
.|.||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..++
T Consensus 193 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l 269 (299)
T 1s70_B 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAF 269 (299)
T ss_dssp CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTT
T ss_pred hhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence 45677778888888888888888888887 78888888888 78888888888888888888877777777777
Q ss_pred cccccccch
Q 040660 183 YPSLLDARP 191 (487)
Q Consensus 183 ~~~~~~~~~ 191 (487)
..+......
T Consensus 270 ~~A~~~~~~ 278 (299)
T 1s70_B 270 DVADEDILG 278 (299)
T ss_dssp TSCCSGGGH
T ss_pred HHHHHHHHH
Confidence 776554333
No 20
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.7e-31 Score=253.57 Aligned_cols=181 Identities=21% Similarity=0.181 Sum_probs=148.9
Q ss_pred CCCCchHHHHHHHHcCCH-HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNV-EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~-~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.|..|.|+||+|+..++. .++++|++.|+++|.+|.+|+||||+|+.. |+.+++++|++.|++++.+ +..|.||||
T Consensus 48 ~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t~l~ 124 (269)
T 4b93_B 48 ADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAVPLH 124 (269)
T ss_dssp ---------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCCHHH
T ss_pred cCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCCccc
Confidence 356788999999988876 478999999999999999999999999999 9999999999999999998 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
+|+..++.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++ .++..|.|||| +|+..++.+++
T Consensus 125 ~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~~~v 201 (269)
T 4b93_B 125 LACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHVFVV 201 (269)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHHHH
T ss_pred cccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999 99999999999
Q ss_pred HHhhcCCCCCCCCCCccchhcccccccc
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLLDA 189 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~ 189 (487)
++|+++|++.+.++..+.+++..+.+.+
T Consensus 202 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 202 ELLLLHGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence 9999999999999988888888776543
No 21
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=1.8e-30 Score=241.72 Aligned_cols=206 Identities=17% Similarity=0.110 Sum_probs=172.3
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-CCCCCCcHHHHHH
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAGLE-WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR-PGRHGGTPLHHAA 84 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~-~d~~g~TpLh~Aa 84 (487)
|+||||+|++.|+.++|+.|++.+.++. .+|..|.||||+|+.. |+.+++++|++.|++++... .|..|.||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 6789999999999999999999987754 4888999999999999 99999999999994444332 3788999999999
Q ss_pred HhCCHHHHHHHHHcC--CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 85 KRGLERTVKLLLSYG--ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~g--a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
..|+.+++++|+++| ++++..|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 157 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE 157 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence 999999999999998 8888899999999999999999999999999999988 88999999999 888899999999
Q ss_pred HhhcCC-CCCCCCCCccchhccccccccchHHHHHHH---hcccCCCCCCCCCCceee
Q 040660 163 AVLPTG-SRNPTKPFKLELAIYPSLLDARPRMVIALW---KANLEEPKFQHSDPSVTI 216 (487)
Q Consensus 163 ~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~i 216 (487)
+|++.| ++.+.++..+..+++.+...+....+..|. +..++..+..+.+++.+.
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A 215 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA 215 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGC
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHH
Confidence 999999 888888888888888888877777777776 334444444455555433
No 22
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=1.9e-30 Score=241.66 Aligned_cols=181 Identities=20% Similarity=0.122 Sum_probs=169.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcC--CCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcC--CCccccCCCCCCC
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDG--AGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELG--AKVDAYRPGRHGG 77 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g--a~~~~~~~d~~g~ 77 (487)
.|..|.||||+|+..|+.+++++|+++| .+++. .|..|.||||+|+.. |+.+++++|+++| ++++.. |..|.
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g~ 108 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQGV 108 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTCC
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCCC
Confidence 5788999999999999999999999999 55555 788999999999999 9999999999999 788877 89999
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC-CcccccccccCCCCHHHHHhhhcC
Q 040660 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI-CIFSGWLRELYGPGFLELLAPQLL 156 (487)
Q Consensus 78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~G~t~L~~~a~~~~ 156 (487)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|...+
T Consensus 109 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~~ 185 (228)
T 2dzn_A 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAEG 185 (228)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred CHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999 9998 99999999999 999999
Q ss_pred CHHHHHHhh-cCCCCCCCCCCccchhcccccccc
Q 040660 157 SRKVWVAVL-PTGSRNPTKPFKLELAIYPSLLDA 189 (487)
Q Consensus 157 ~~~~~~~Ll-~~g~~~~~~~~~~~~~~~~~~~~~ 189 (487)
+.+++++|+ ..|++.+..+..+..++..+....
T Consensus 186 ~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 186 HGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp CHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred CHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 999999999 899999998888888887776543
No 23
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=8.4e-31 Score=231.76 Aligned_cols=159 Identities=25% Similarity=0.254 Sum_probs=149.6
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
+++|.|+||+|++.|+.++|+.|++. +.+++..+..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 81 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLHN 81 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHHH
Confidence 67899999999999999999999985 677888899999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|.. ++.++++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~~ 157 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQD 157 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999 7666 8899999
Q ss_pred HhhcCCC
Q 040660 163 AVLPTGS 169 (487)
Q Consensus 163 ~Ll~~g~ 169 (487)
+|+.+|+
T Consensus 158 ~L~~~gA 164 (165)
T 3twr_A 158 LLRGDAA 164 (165)
T ss_dssp HHHTC--
T ss_pred HHhhccc
Confidence 9999886
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=2.6e-30 Score=242.29 Aligned_cols=190 Identities=22% Similarity=0.239 Sum_probs=178.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC-CCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG-AKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g-a~~~~~~~d~~g~TpLh 81 (487)
.+..|.||||+|+..|+.++|++|+++|++++.++..|.||||+|+.. |+.+++++|++.| .+++.. |..|.||||
T Consensus 40 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g~t~L~ 116 (237)
T 3b7b_A 40 CSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDGGWTPMI 116 (237)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTTSCCHHH
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCCCCCHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999998 888887 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ ..|..|.|||| +|...++.+++
T Consensus 117 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v 193 (237)
T 3b7b_A 117 WATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARENRYDCV 193 (237)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHhHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999 89999999999
Q ss_pred HHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 162 VAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
++|+++|++.+.++..+..+++.+...+....++.+.
T Consensus 194 ~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~ 230 (237)
T 3b7b_A 194 VLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS 230 (237)
T ss_dssp HHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888888766665544443
No 25
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=6.3e-31 Score=263.05 Aligned_cols=192 Identities=19% Similarity=0.205 Sum_probs=126.6
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR----------- 71 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~----------- 71 (487)
.|.+|.|+||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..+
T Consensus 16 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~ 94 (364)
T 3ljn_A 16 SDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHSLWHGQKPIHLAVMA 94 (364)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCCCBTTBCHHHHHHHT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCccccCCCCHHHHHHHc
Confidence 477899999999999999999999999999999999999999999999 99999999999998766410
Q ss_pred ---------------------------------------CCCCCCcHHHHHHHhC--CHHHHHHHHHcCCCcccccCCCC
Q 040660 72 ---------------------------------------PGRHGGTPLHHAAKRG--LERTVKLLLSYGANALVLNDDCQ 110 (487)
Q Consensus 72 ---------------------------------------~d~~g~TpLh~Aa~~g--~~~~v~~Ll~~ga~~~~~d~~g~ 110 (487)
.|..|.||||+|+..| +.++|++|+++|++++.+|..|+
T Consensus 95 g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~ 174 (364)
T 3ljn_A 95 NKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADE 174 (364)
T ss_dssp TCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSC
T ss_pred CCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCC
Confidence 1334555555555555 55555555555555555555555
Q ss_pred CHHHHHHHcCCHHHHHHHHhCCCc-----ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcccc
Q 040660 111 TPLEVARAKGFTNVVRAIENHICI-----FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPS 185 (487)
Q Consensus 111 TpL~~A~~~g~~~~v~~Ll~~ga~-----~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~ 185 (487)
||||+|+..|+.++|++|+++|++ ++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..+++.+
T Consensus 175 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A 251 (364)
T 3ljn_A 175 TPLMRAMEFRNREALDLMMDTVPSKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLS 251 (364)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhccccccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 555555555555555555555554 44 45555555555 45555555555555555555555554555555555
Q ss_pred ccccchHHHHHHH
Q 040660 186 LLDARPRMVIALW 198 (487)
Q Consensus 186 ~~~~~~~~~~~l~ 198 (487)
...+....+..|.
T Consensus 252 ~~~g~~~~v~~Ll 264 (364)
T 3ljn_A 252 VRAAMVLLTKELL 264 (364)
T ss_dssp HHTCCHHHHHHHH
T ss_pred HHhChHHHHHHHH
Confidence 4444444444443
No 26
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.6e-31 Score=249.23 Aligned_cols=192 Identities=19% Similarity=0.176 Sum_probs=169.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGA----GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
.|++|+||||+|+..|+.+++++|++.+. +++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.|
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t 80 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRGNT 80 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTCCC
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCC
Confidence 57889999999999999999999988754 6899999999999999999 9999999999999999987 889999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCC------cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccccc-CCCCHHHHH
Q 040660 79 PLHHAAKRGLERTVKLLLSYGAN------ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLREL-YGPGFLELL 151 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga~------~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~ 151 (487)
|||+|+..|+.+++++|++.|++ ++..|..|+||||+|+..|+.++|++|+++|++++ .++. .|.|||| +
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~ 157 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH-L 157 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-H
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH-H
Confidence 99999999999999999999876 57788899999999999999999999999999998 8887 8999999 8
Q ss_pred hhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660 152 APQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA 200 (487)
Q Consensus 152 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (487)
|+..++.+++++|+++|++.+..+..+..+++.+...+....+..|...
T Consensus 158 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 206 (236)
T 1ikn_D 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL 206 (236)
T ss_dssp HHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHc
Confidence 8899999999999999999998888888888888888888888877643
No 27
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.1e-30 Score=234.45 Aligned_cols=166 Identities=25% Similarity=0.322 Sum_probs=156.5
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
.++.++||.|+..|+.++|++|++. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence 4678999999999999999999998 678999999999999999999 9999999999999999998 89999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVA 163 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~ 163 (487)
+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||+ +|...++.+++++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER 156 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999 9999999999999
Q ss_pred hhcCCCCCCCCCC
Q 040660 164 VLPTGSRNPTKPF 176 (487)
Q Consensus 164 Ll~~g~~~~~~~~ 176 (487)
|+..|++.+..+.
T Consensus 157 L~~~g~~~~~~~~ 169 (179)
T 3f6q_A 157 AEKMGQNLNRIPY 169 (179)
T ss_dssp HHHTTCCCSCBCC
T ss_pred HHHhhcCcccCCc
Confidence 9999999876663
No 28
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=5.3e-31 Score=234.69 Aligned_cols=163 Identities=23% Similarity=0.195 Sum_probs=154.2
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+.|+||+|+..|+.++++.|++.+.+ ++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence 46899999999999999999999877 899999999999999999 9999999999999999998 8999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE 155 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 99999999999 999999999999999
Q ss_pred cCCCCCCCCC
Q 040660 166 PTGSRNPTKP 175 (487)
Q Consensus 166 ~~g~~~~~~~ 175 (487)
++|++....+
T Consensus 156 ~~~~~~~~~~ 165 (172)
T 3v30_A 156 NHILKLFQSN 165 (172)
T ss_dssp HHHHHHSCC-
T ss_pred HHHHHHhccc
Confidence 9988765444
No 29
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=2.9e-30 Score=225.46 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=146.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+..|+||+|++.|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+.
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 76 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAAS 76 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHH
Confidence 45799999999999999999999999887 588999999999999 9999999999999999998 8999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAV 164 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~L 164 (487)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.+++++|
T Consensus 77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L 152 (153)
T 1awc_B 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL 152 (153)
T ss_dssp HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999 99999999999 99999999999987
No 30
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=5.1e-30 Score=247.89 Aligned_cols=186 Identities=20% Similarity=0.237 Sum_probs=172.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|++++. +..|.||||+
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~---~~~g~t~L~~ 163 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQP---ESDLASPIHE 163 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSC---SCTTSCHHHH
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCC---CCCCCCHHHH
Confidence 367899999999999999999999999999999999999999999999 999999999999999986 4569999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++|++|+++|++++ . +..|.|||| +|+..++.++++
T Consensus 164 A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~-~~~g~t~L~-~A~~~~~~~~v~ 239 (285)
T 3d9h_A 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLH-AVVRTASEELAC 239 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--C-CBTTBCHHH-HHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--C-CCCCCCHHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999997 3 889999999 999999999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
+|+++|++.+.++..+..++..+... ...+..|.
T Consensus 240 ~Ll~~gad~~~~d~~g~t~l~~A~~~--~~~~~~Ll 273 (285)
T 3d9h_A 240 LLMDFGADTQAKNAEGKRPVELVPPE--SPLAQLFL 273 (285)
T ss_dssp HHHHTTCCTTCCCTTSCCGGGGSCTT--SHHHHHHH
T ss_pred HHHHCCCCCCCcCCCCCCHHHHhcCc--cHHHHHHH
Confidence 99999999999998888888887743 34444444
No 31
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.6e-30 Score=234.97 Aligned_cols=189 Identities=19% Similarity=0.184 Sum_probs=172.5
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
+..+.|+||+|+..|+.+.|+.|+..+. +++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 4678899999999999999999999865 8999999999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHH-HcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC-CcccccccccCCCCHHHHHhhhcCC---
Q 040660 83 AAKRGLERTVKLLL-SYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI-CIFSGWLRELYGPGFLELLAPQLLS--- 157 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll-~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~G~t~L~~~a~~~~~--- 157 (487)
|+..|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|...+.
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~ 155 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ 155 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence 99999999999999 566799999999999999999999999999999999 8888 99999999999 7777776
Q ss_pred --HHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 158 --RKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 158 --~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
.+++++|+++|++.+.++..+..++..+...+....+..|.
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 89999999999999999888888888888877777777654
No 32
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=5.4e-30 Score=233.81 Aligned_cols=160 Identities=21% Similarity=0.210 Sum_probs=153.7
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHH-HcCCCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLI-ELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll-~~ga~~~~~~~d~~g~TpLh 81 (487)
.|.+|.||||+|++.|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++.. |..|.||||
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g~t~L~ 111 (201)
T 3hra_A 35 VDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYGGNALI 111 (201)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTSCCSHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCCCcHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999 566789987 899999999
Q ss_pred HHHHhCCHHHHHHHHHcC-CCcccccCCCCCHHHHHHHcCC-----HHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660 82 HAAKRGLERTVKLLLSYG-ANALVLNDDCQTPLEVARAKGF-----TNVVRAIENHICIFSGWLRELYGPGFLELLAPQL 155 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~~g~-----~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~ 155 (487)
+|+..|+.+++++|++.| ++++.+|..|+||||+|+..+. .+++++|+++|++++ .+|..|.|||| +|...
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~ 188 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-YANQK 188 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHc
Confidence 999999999999999999 9999999999999999999998 999999999999999 99999999999 99999
Q ss_pred CCHHHHHHhhcCC
Q 040660 156 LSRKVWVAVLPTG 168 (487)
Q Consensus 156 ~~~~~~~~Ll~~g 168 (487)
++.+++++|+++|
T Consensus 189 ~~~~~~~~Ll~~G 201 (201)
T 3hra_A 189 GYTEISKILAQYN 201 (201)
T ss_dssp TCHHHHHHHHTCC
T ss_pred CCHhHHHHHHhcC
Confidence 9999999999886
No 33
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.1e-30 Score=244.86 Aligned_cols=164 Identities=23% Similarity=0.157 Sum_probs=156.0
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCC------ccccCCCCCC
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAK------VDAYRPGRHG 76 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~------~~~~~~d~~g 76 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|++ ++.. +..|
T Consensus 41 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~--~~~g 117 (236)
T 1ikn_D 41 QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT--NYNG 117 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC--CTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc--CCCC
Confidence 467799999999999999999999999999999999999999999999 999999999999976 4454 8899
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCcccccC-CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhc
Q 040660 77 GTPLHHAAKRGLERTVKLLLSYGANALVLND-DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQL 155 (487)
Q Consensus 77 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~ 155 (487)
.||||+|+..|+.+++++|+++|++++.++. .|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|...
T Consensus 118 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~ 194 (236)
T 1ikn_D 118 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-LTWGR 194 (236)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-GCTTS
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-HHHcc
Confidence 9999999999999999999999999999998 99999999999999999999999999999 99999999999 99999
Q ss_pred CCHHHHHHhhcCCCCCC
Q 040660 156 LSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 156 ~~~~~~~~Ll~~g~~~~ 172 (487)
++.+++++|+++|++..
T Consensus 195 ~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 195 PSTRIQQQLGQLTLENL 211 (236)
T ss_dssp SCHHHHHHHHTTSCGGG
T ss_pred CchHHHHHHHHcchhhh
Confidence 99999999999999753
No 34
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.9e-30 Score=228.63 Aligned_cols=131 Identities=37% Similarity=0.512 Sum_probs=123.9
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.. |+.+++++|+++|+++|.+ |.+|+||||+
T Consensus 33 ~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~G~TpLh~ 109 (169)
T 4gpm_A 33 SDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHH 109 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCCCCHHHH
Confidence 478899999999999999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 136 (487)
|+..|+.++|++|+++|++++.+|.+|+||||+|+.+|+.++|++|+++|++++
T Consensus 110 A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 110 AAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 999999999999999999999999999999999999999999999999999986
No 35
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=2.4e-30 Score=241.76 Aligned_cols=169 Identities=21% Similarity=0.120 Sum_probs=154.0
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCC-----CccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCC-----
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGL-----EWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRP----- 72 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-----~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~----- 72 (487)
.|..|+||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+.. |+.+++++|+++|++++..+.
T Consensus 33 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~~~~~ 111 (232)
T 2rfa_A 33 RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN-QNVNLVRALLARGASVSARATGSVFH 111 (232)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCCSGGGS
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc-CCHHHHHHHHhCCCCCCcccCCccee
Confidence 4678999999999999999999999999886 67788999999999999 999999999999999998721
Q ss_pred ------CCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHH----HHHHhCCCcccc----c
Q 040660 73 ------GRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVV----RAIENHICIFSG----W 138 (487)
Q Consensus 73 ------d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v----~~Ll~~ga~~~~----~ 138 (487)
|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++ ++|+++|++... .
T Consensus 112 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~ 191 (232)
T 2rfa_A 112 YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191 (232)
T ss_dssp CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGG
T ss_pred ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhc
Confidence 23799999999999999999999999999999999999999999999999988 999999998721 1
Q ss_pred ccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCC
Q 040660 139 LRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPT 173 (487)
Q Consensus 139 ~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~ 173 (487)
.+|..|.|||| +|+..++.+++++|+++|.....
T Consensus 192 ~~~~~g~tpl~-~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 192 VPNNQGLTPFK-LAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHC--
T ss_pred cCCCCCCCHHH-HHHHcCCHHHHHHHHhcCccchh
Confidence 78999999999 99999999999999999887643
No 36
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=3.2e-30 Score=247.08 Aligned_cols=209 Identities=22% Similarity=0.170 Sum_probs=161.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCC
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAG--------LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGR 74 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--------~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~ 74 (487)
-|+.+.++|+.||+.|+.++|++||+.|++ ++..|..|.||||+|+..++...++++|++.|+++|.+ |.
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~--d~ 84 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT--SQ 84 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC--CT
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc--CC
Confidence 366788999999999999999999998875 56678889999999998833346899999999999998 99
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh
Q 040660 75 HGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ 154 (487)
Q Consensus 75 ~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~ 154 (487)
+|+||||+|+..|+.++|++|++.|++++.++.+|.||||+|+..++.+++++|+++|++++ .+|..|.|||| +|+.
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A~~ 161 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YACS 161 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HHHH
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999 8999
Q ss_pred cCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh--cccCCCCCCCCCCceee
Q 040660 155 LLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK--ANLEEPKFQHSDPSVTI 216 (487)
Q Consensus 155 ~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~i 216 (487)
.++.+++++|+++|++++..+..+..+++.+...+....+..|.. +.++..+..+.+|+.+.
T Consensus 162 ~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 162 GGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp TTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGS
T ss_pred CCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 999999999999999999999899999999988888888887764 34555555666666544
No 37
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=1.6e-29 Score=250.50 Aligned_cols=192 Identities=24% Similarity=0.232 Sum_probs=171.9
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g~t~L~~ 130 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQFTPLHE 130 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence 467789999999999999999999999999999999999999999999 9999999999999999987 8899999999
Q ss_pred HHHhCCHHHHHHHHHcCCCccccc------------------------------------------------------CC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLN------------------------------------------------------DD 108 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d------------------------------------------------------~~ 108 (487)
|+..|+.+++++|+++|++++..+ ..
T Consensus 131 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 210 (351)
T 3utm_A 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQS 210 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTT
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCC
Confidence 999999999999999999887654 45
Q ss_pred CCCHHHHHHHc---CCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhcccc
Q 040660 109 CQTPLEVARAK---GFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPS 185 (487)
Q Consensus 109 g~TpL~~A~~~---g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~ 185 (487)
|.||||+|+.. +..+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..+++.+
T Consensus 211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A 287 (351)
T 3utm_A 211 HETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRA 287 (351)
T ss_dssp CCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence 67889999988 45789999999999998 89999999999 89999999999999999999998888888888888
Q ss_pred ccccchHHHHHHHhc
Q 040660 186 LLDARPRMVIALWKA 200 (487)
Q Consensus 186 ~~~~~~~~~~~l~~~ 200 (487)
...+....+..|...
T Consensus 288 ~~~~~~~~v~~Ll~~ 302 (351)
T 3utm_A 288 ALAGHLQTCRLLLSY 302 (351)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHcCcHHHHHHHHHc
Confidence 888888888777643
No 38
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=1.3e-29 Score=235.13 Aligned_cols=164 Identities=21% Similarity=0.194 Sum_probs=158.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.|..|.||||+|+..|+.+++++|++++. +++.++..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||
T Consensus 54 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~ 130 (223)
T 2f8y_A 54 QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDLGKSALH 130 (223)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTSCBHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCCCCcHHH
Confidence 46789999999999999999999999987 8999999999999999999 9999999999999999998 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|.|||+ +|...++.+++
T Consensus 131 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~ 207 (223)
T 2f8y_A 131 WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQERMHHDIV 207 (223)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHhcchHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999 99999999999
Q ss_pred HHhhcCCCCCC
Q 040660 162 VAVLPTGSRNP 172 (487)
Q Consensus 162 ~~Ll~~g~~~~ 172 (487)
++|+++|+...
T Consensus 208 ~~L~~~g~~~~ 218 (223)
T 2f8y_A 208 RLLDEYNLVRS 218 (223)
T ss_dssp HHHHHTTCSSC
T ss_pred HHHHHcCCCcc
Confidence 99999999753
No 39
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=1.4e-29 Score=236.37 Aligned_cols=191 Identities=19% Similarity=0.193 Sum_probs=178.2
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAG-LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
+..+.++||+|++.|+.+.++.|++.+.. ++.+|..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 79 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI 79 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence 34578999999999999999999988644 778899999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| .|+..++.++++
T Consensus 80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 156 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH 156 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 99999999999 899999999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA 200 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (487)
+|+..|++.+.++..+..+++.+...+....+..|...
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 194 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ 194 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence 99999999999888888888888888888888777643
No 40
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=1.6e-29 Score=221.25 Aligned_cols=153 Identities=25% Similarity=0.307 Sum_probs=147.1
Q ss_pred chHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 7 KEELLYQQVNYGNVEGIKALCRD-GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+.|+||+|+..|+.++++.|++. +.+++.+|..|.||||+ +.. |+.+++++|+++|++++.+ |..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHHH
Confidence 67999999999999999999999 45899999999999999 888 9999999999999999998 8999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
.|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++ .+|..|.|||| +|...++.+++++|+
T Consensus 78 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDILQ 153 (156)
T ss_dssp TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 8988 99999999999 999999999999998
Q ss_pred cC
Q 040660 166 PT 167 (487)
Q Consensus 166 ~~ 167 (487)
++
T Consensus 154 ~~ 155 (156)
T 1bd8_A 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 64
No 41
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=1.9e-30 Score=250.87 Aligned_cols=189 Identities=17% Similarity=0.096 Sum_probs=170.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|.||||+|+..|+.++|++|+++|++++.+| |.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 27 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~t~L~~ 101 (285)
T 3kea_A 27 ADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKGNTALYY 101 (285)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCcHHHH
Confidence 47889999999999999999999999999998874 89999999999 9999999999999999997 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCC-CCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDC-QTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g-~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
|+..|+.+++++|+++|++++.+|..| .||||+|+..|+.+++++|+++|++.. .. ..|.|||| +|+..++.+++
T Consensus 102 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~-~~g~t~L~-~A~~~g~~~~v 177 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DL-AILLSCIH-ITIKNGHVDMM 177 (285)
T ss_dssp HHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CC-STHHHHHH-HHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cc-cCCccHHH-HHHHcChHHHH
Confidence 999999999999999999999999999 799999999999999999999998763 11 38899999 89999999999
Q ss_pred HHhhcCCCCCCCCCCccchh-ccccccccchHHHHHHHhc
Q 040660 162 VAVLPTGSRNPTKPFKLELA-IYPSLLDARPRMVIALWKA 200 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ 200 (487)
++|+++|++.+.++..+... ++.+...+....+..|...
T Consensus 178 ~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~ 217 (285)
T 3kea_A 178 ILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY 217 (285)
T ss_dssp HHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred HHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence 99999999998888777775 7777777777777766543
No 42
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=2e-29 Score=258.33 Aligned_cols=208 Identities=24% Similarity=0.201 Sum_probs=180.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.+.+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 86 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDDQTPLHC 86 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCCCCHHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999999999988 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.++|++|+++|++++..|..|+||||+|+..|+.++|++|++++++.+ ..+..|.|||| +|+..++.++++
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~ 163 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYGKVRVAE 163 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 88899999999 899999999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc--ccCCCCCCCCCCceee
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA--NLEEPKFQHSDPSVTI 216 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~i 216 (487)
+|+++|++.+..+..+...++.+...+....+..|... ....+...+.+++...
T Consensus 164 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 219 (437)
T 1n11_A 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219 (437)
T ss_dssp HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHH
T ss_pred HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence 99999999888887777788888777777777766543 3333444455554433
No 43
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.97 E-value=3.3e-29 Score=240.58 Aligned_cols=206 Identities=22% Similarity=0.200 Sum_probs=139.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWI-DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
+|+|+||+|++.|+.++|++|++.|++++.. +..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHH
Confidence 4677777777777777777777777777766 56677777777777 7777777777777777766 677777777777
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccccccc----------ccCCCCHHHHHhhh
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLR----------ELYGPGFLELLAPQ 154 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~----------d~~G~t~L~~~a~~ 154 (487)
..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++ .. +..|.|||| .|..
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~~ 157 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAAE 157 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHHH
Confidence 7777777777777777777777777777777777777777777777777766 44 566777777 6667
Q ss_pred cCCHHHHHHhhcC-CCCCCCCCCccchhccccccccc----hHHHHHHH--hcccCCCCCCCCCCceeee
Q 040660 155 LLSRKVWVAVLPT-GSRNPTKPFKLELAIYPSLLDAR----PRMVIALW--KANLEEPKFQHSDPSVTIV 217 (487)
Q Consensus 155 ~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~--~~~~~~~~~~~~~~~~~i~ 217 (487)
.++.+++++|++. |.+.+..+..+...++.+..... ...+..|. +..++..+..+.+++....
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence 7777777777765 77666666555555555554333 33333333 2334444455556655444
No 44
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=2e-30 Score=246.33 Aligned_cols=163 Identities=18% Similarity=0.073 Sum_probs=152.5
Q ss_pred CCCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCcc-----------CCCCChHHHHHHhCCCcHHHHHHHHHcCCCcc
Q 040660 3 LQQSKEELLYQQVNY---GNVEGIKALCRDGAGLEWI-----------DKEGKTPLIAACMNPGLYDVAKTLIELGAKVD 68 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~-----------d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~ 68 (487)
.|..|+||||+|+.. |+.++|++|++.|++++.. |..|.||||+|+.. |+.+++++|+++|++++
T Consensus 39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~ 117 (256)
T 2etb_A 39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKLLVENGADVH 117 (256)
T ss_dssp BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTT
T ss_pred CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHHHHHHcCCCCC
Confidence 478899999999999 9999999999998877633 47899999999999 99999999999999999
Q ss_pred ccCCCCC-------------CCcHHHHHHHhCCHHHHHHHHH---cCCCcccccCCCCCHHHHHHH--cCCHH-------
Q 040660 69 AYRPGRH-------------GGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARA--KGFTN------- 123 (487)
Q Consensus 69 ~~~~d~~-------------g~TpLh~Aa~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpL~~A~~--~g~~~------- 123 (487)
.+ |.. |.||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+. .++.+
T Consensus 118 ~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 118 LR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp CC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred cc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 98 665 9999999999999999999999 999999999999999999999 88988
Q ss_pred HHHHHHhCCCcc-------cccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660 124 VVRAIENHICIF-------SGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 124 ~v~~Ll~~ga~~-------~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~ 171 (487)
+|++|+++|+++ + .+|..|.|||| +|+..++.+++++|+++|...
T Consensus 196 iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 196 MYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999 7 89999999999 999999999999999988764
No 45
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=7.6e-30 Score=245.49 Aligned_cols=161 Identities=20% Similarity=0.228 Sum_probs=153.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHH-----hCCCcHHHHHHHHHcCCCccccCCCCCC
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGA-GLEWIDKEGKTPLIAAC-----MNPGLYDVAKTLIELGAKVDAYRPGRHG 76 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpL~~A~-----~~~g~~~~v~~Ll~~ga~~~~~~~d~~g 76 (487)
.|.+|+||||+|+..|+.++|++|++.|+ +++.+|..|.||||+|+ .. ++.+++++|++.|.+++.. |..|
T Consensus 107 ~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 183 (276)
T 4hbd_A 107 ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--SQAG 183 (276)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--TTTC
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--CCCC
Confidence 47889999999999999999999999998 99999999999999999 55 8899999999999988887 8899
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHh-CCCcccccccccCCCCHHHHHhhhc
Q 040660 77 GTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIEN-HICIFSGWLRELYGPGFLELLAPQL 155 (487)
Q Consensus 77 ~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~ 155 (487)
.||||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|++ +|++++ .+|..|.|||| +|...
T Consensus 184 ~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A~~~ 260 (276)
T 4hbd_A 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VALDA 260 (276)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HHHHc
Confidence 999999999999999999999999999999999999999999999999999999 899999 99999999999 99999
Q ss_pred CCHHHHHHhhcCCC
Q 040660 156 LSRKVWVAVLPTGS 169 (487)
Q Consensus 156 ~~~~~~~~Ll~~g~ 169 (487)
++.+++++|++++.
T Consensus 261 g~~~iv~~Ll~~~~ 274 (276)
T 4hbd_A 261 GQSEIASMLYSRMN 274 (276)
T ss_dssp TCHHHHHHHHHHCC
T ss_pred CCHHHHHHHHhccC
Confidence 99999999997653
No 46
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=1.2e-29 Score=254.80 Aligned_cols=191 Identities=16% Similarity=0.094 Sum_probs=178.9
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcC---CCccccCCCCCCCcH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELG---AKVDAYRPGRHGGTP 79 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~g---a~~~~~~~d~~g~Tp 79 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++++ ++++.. |..|.||
T Consensus 162 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~--d~~g~t~ 238 (373)
T 2fo1_E 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL--DRNGMTA 238 (373)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--CTTSCCH
T ss_pred CCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--CCCCCCH
Confidence 467899999999999999999999999999999999999999999999 9999999999998 799987 9999999
Q ss_pred HHHHHHhC---CHHHHHHHHHcCCCccc--------ccCCCCCHHHHHHHcCCHHHHHHHHhCC-CcccccccccCCCCH
Q 040660 80 LHHAAKRG---LERTVKLLLSYGANALV--------LNDDCQTPLEVARAKGFTNVVRAIENHI-CIFSGWLRELYGPGF 147 (487)
Q Consensus 80 Lh~Aa~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~TpL~~A~~~g~~~~v~~Ll~~g-a~~~~~~~d~~G~t~ 147 (487)
||+|+..| +.+++++|++.|++++. .|..|+||||+|+..|+.++|++|++++ ++++ .+|..|.||
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~d~~g~Tp 316 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQDEDGKTP 316 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCCTTCCCH
T ss_pred HHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--CcCCCCCCH
Confidence 99999998 89999999999999886 6779999999999999999999999886 9998 999999999
Q ss_pred HHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 148 LELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 148 L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
|| +|+..++.+++++|+++|++.+.++..+..++..+...+....+..|..
T Consensus 317 L~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 317 IM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp HH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHT
T ss_pred HH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99 8999999999999999999999999888888888888888887776654
No 47
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=5.9e-29 Score=238.77 Aligned_cols=190 Identities=21% Similarity=0.191 Sum_probs=179.5
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|
T Consensus 36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 112 (285)
T 1wdy_A 36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFYGFTAFMEA 112 (285)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTCCBHHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CcccCCHHHHH
Confidence 66789999999999999999999999999999999999999999999 9999999999999999998 99999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccc----------cCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccccccccCCCCHHHHHh
Q 040660 84 AKRGLERTVKLLLSYGANALVL----------NDDCQTPLEVARAKGFTNVVRAIENH-ICIFSGWLRELYGPGFLELLA 152 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~G~t~L~~~a 152 (487)
+..|+.+++++|++.|++++.. +..|.||||+|+..|+.+++++|+++ |++++ ..|..|.|||| .|
T Consensus 113 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t~l~-~a 189 (285)
T 1wdy_A 113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRNALI-HA 189 (285)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCCHHH-HH
T ss_pred HHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCCHHH-HH
Confidence 9999999999999999999987 78899999999999999999999998 99999 99999999999 77
Q ss_pred hhcCC----HHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 153 PQLLS----RKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 153 ~~~~~----~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
...+. .+++++|+++|++.+.++..+..+++.+...+....+..|..
T Consensus 190 ~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 190 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 77777 899999999999999988888889998888888888887765
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=6.6e-30 Score=242.71 Aligned_cols=191 Identities=18% Similarity=0.171 Sum_probs=169.7
Q ss_pred CchHHHHHHHHcCCHH----HHHHHHHcCCCCCc----cCCCCChHHHHHHhC--CCcHHHHHHHHHcCCCcccc-----
Q 040660 6 SKEELLYQQVNYGNVE----GIKALCRDGAGLEW----IDKEGKTPLIAACMN--PGLYDVAKTLIELGAKVDAY----- 70 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~----~d~~G~TpL~~A~~~--~g~~~~v~~Ll~~ga~~~~~----- 70 (487)
.|+|+||+|++.|+.+ ++++|++.|++++. +|..|.||||+|+.. .|+.+++++|++.|++++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~ 80 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN 80 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence 3899999999999997 66777779999998 899999999999975 37789999999999887633
Q ss_pred ----CCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCC-------------CCCHHHHHHHcCCHHHHHHHHh---
Q 040660 71 ----RPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD-------------CQTPLEVARAKGFTNVVRAIEN--- 130 (487)
Q Consensus 71 ----~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~TpL~~A~~~g~~~~v~~Ll~--- 130 (487)
+.|..|.||||+|+..|+.+++++|+++|++++.+|.. |+||||+|+..|+.++|++|++
T Consensus 81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 12578999999999999999999999999999999986 9999999999999999999999
Q ss_pred CCCcccccccccCCCCHHHHHhhh--cCCHH-------HHHHhhcCCCCC-------CCCCCccchhccccccccchHHH
Q 040660 131 HICIFSGWLRELYGPGFLELLAPQ--LLSRK-------VWVAVLPTGSRN-------PTKPFKLELAIYPSLLDARPRMV 194 (487)
Q Consensus 131 ~ga~~~~~~~d~~G~t~L~~~a~~--~~~~~-------~~~~Ll~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 194 (487)
+|++++ .+|..|.|||| +|+. .++.+ ++++|+++|++. +.++..+..+++.+...+....+
T Consensus 161 ~ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v 237 (256)
T 2etb_A 161 QPASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIF 237 (256)
T ss_dssp CCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHH
T ss_pred cCCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHH
Confidence 999999 99999999999 6766 77887 999999999998 77888888888888887777777
Q ss_pred HHHHh
Q 040660 195 IALWK 199 (487)
Q Consensus 195 ~~l~~ 199 (487)
..|..
T Consensus 238 ~~Ll~ 242 (256)
T 2etb_A 238 RHILQ 242 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 76653
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=5.1e-30 Score=245.97 Aligned_cols=164 Identities=21% Similarity=0.098 Sum_probs=150.8
Q ss_pred CCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------Cc----cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccc
Q 040660 4 QQSKEELLYQQVNY---GNVEGIKALCRDGAGL-------EW----IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69 (487)
Q Consensus 4 d~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-------~~----~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~ 69 (487)
|..|+||||+|+.. |+.++|++|+++|+++ +. +|..|.||||+|+.. |+.+++++|+++|++++.
T Consensus 51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~~~ 129 (273)
T 2pnn_A 51 PETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADVQA 129 (273)
T ss_dssp TTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred CcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCcCc
Confidence 67899999999987 9999999999998652 22 567899999999999 999999999999999999
Q ss_pred cCCCC--------------CCCcHHHHHHHhCCHHHHHHHHH---cCCCcccccCCCCCHHHHHHHcCC---------HH
Q 040660 70 YRPGR--------------HGGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARAKGF---------TN 123 (487)
Q Consensus 70 ~~~d~--------------~g~TpLh~Aa~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpL~~A~~~g~---------~~ 123 (487)
+ +. .|.||||+|+..|+.++|++|++ .|++++.+|.+|+||||+|+..|+ .+
T Consensus 130 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~ 207 (273)
T 2pnn_A 130 A--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207 (273)
T ss_dssp C--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred c--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHH
Confidence 8 55 79999999999999999999999 999999999999999999999998 89
Q ss_pred HHHHHHhCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660 124 VVRAIENHICIFSG-----WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 124 ~v~~Ll~~ga~~~~-----~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~ 171 (487)
++++|+++|++++. ..+|..|.|||| +|+..++.+++++|+++|+..
T Consensus 208 ~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~d 259 (273)
T 2pnn_A 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIHE 259 (273)
T ss_dssp HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC-
T ss_pred HHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCCC
Confidence 99999999999862 258999999999 999999999999999999953
No 50
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=6.4e-30 Score=243.26 Aligned_cols=164 Identities=18% Similarity=0.093 Sum_probs=150.6
Q ss_pred CCCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccc
Q 040660 4 QQSKEELLYQQV---NYGNVEGIKALCRDGAG-----------LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDA 69 (487)
Q Consensus 4 d~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~-----------~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~ 69 (487)
|..|+||||+|+ +.|+.++|++|++.|++ ++..|..|.||||+|+.. |+.+++++|+++|++++.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCc
Confidence 477999999999 77999999999998744 445566899999999999 999999999999999999
Q ss_pred cCCC--------------CCCCcHHHHHHHhCCHHHHHHHHH---cCCCcccccCCCCCHHHHHHHcCC---------HH
Q 040660 70 YRPG--------------RHGGTPLHHAAKRGLERTVKLLLS---YGANALVLNDDCQTPLEVARAKGF---------TN 123 (487)
Q Consensus 70 ~~~d--------------~~g~TpLh~Aa~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpL~~A~~~g~---------~~ 123 (487)
+ + ..|.||||+|+..|+.++|++|++ +|++++.+|..|+||||+|+..++ .+
T Consensus 122 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 199 (260)
T 3jxi_A 122 Q--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199 (260)
T ss_dssp C--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred c--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence 7 6 689999999999999999999999 999999999999999999999888 79
Q ss_pred HHHHHHhCCCcccc-----cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660 124 VVRAIENHICIFSG-----WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 124 ~v~~Ll~~ga~~~~-----~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~ 171 (487)
++++|+++|++++. ..+|..|.|||| +|+..++.+++++|+++|...
T Consensus 200 ~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCc
Confidence 99999999999831 279999999999 999999999999999998865
No 51
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=8.3e-29 Score=253.75 Aligned_cols=176 Identities=20% Similarity=0.163 Sum_probs=87.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 211 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~ 287 (437)
T 1n11_A 211 NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQE-GHAEMVALLLSKQANGNLG--NKSGLTPLHLVAQ 287 (437)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHC-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHH
Confidence 344444444444444444444444444444444444555555444 4445555555544444444 4445555555555
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhh
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVL 165 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll 165 (487)
.|+.+++++|+++|++++.+|..|+||||+|+.+|+.++|++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 288 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~L~-~A~~~g~~~iv~~Ll 364 (437)
T 1n11_A 288 EGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN--AKTKLGYSPLH-QAAQQGHTDIVTLLL 364 (437)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC--CCCCCCCCHHH-HHHHCChHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555544 44555555555 444445555555555
Q ss_pred cCCCCCCCCCCccchhcccccc
Q 040660 166 PTGSRNPTKPFKLELAIYPSLL 187 (487)
Q Consensus 166 ~~g~~~~~~~~~~~~~~~~~~~ 187 (487)
++|++.+..+..+..++..+..
T Consensus 365 ~~ga~~~~~~~~g~t~l~~A~~ 386 (437)
T 1n11_A 365 KNGASPNEVSSDGTTPLAIAKR 386 (437)
T ss_dssp HTTCCSCCCCSSSCCHHHHHHH
T ss_pred HCcCCCCCCCCCCCCHHHHHHH
Confidence 5555544444444444444333
No 52
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.96 E-value=8.7e-29 Score=245.12 Aligned_cols=180 Identities=23% Similarity=0.204 Sum_probs=166.5
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR----------- 71 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~----------- 71 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..+
T Consensus 87 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~ 165 (351)
T 3utm_A 87 KDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASK-NRVEVCSLLLSHGADPTLVNCHGKSAVDMAP 165 (351)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCS
T ss_pred cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCccccCCCCcchHHHh
Confidence 467899999999999999999999999999999999999999999999 99999999999999987641
Q ss_pred -----------------------------------------CCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccC
Q 040660 72 -----------------------------------------PGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLND 107 (487)
Q Consensus 72 -----------------------------------------~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~ 107 (487)
.+..|.||||+|+.. +..+++++|++.|++++.+|.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~ 245 (351)
T 3utm_A 166 TPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNK 245 (351)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCT
T ss_pred hhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCC
Confidence 135678999999999 558999999999999999999
Q ss_pred CCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660 108 DCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL 186 (487)
Q Consensus 108 ~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 186 (487)
.|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..++..+.
T Consensus 246 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n--~~d~~g~t~L~-~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 246 DFMTPLHVAAERAHNDVMEVLHKHGAKMN--ALDSLGQTALH-RAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence 99999999999999999999999999999 99999999999 899999999999999999999888877777666553
No 53
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=6e-30 Score=257.01 Aligned_cols=191 Identities=16% Similarity=0.142 Sum_probs=176.0
Q ss_pred CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCC
Q 040660 5 QSKEELLYQQVNYGNVEGIKALC--------RDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG 76 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll--------~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g 76 (487)
..|+||||+|+..|+.++|++|+ +.|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 123 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~~~~~--~~~g 199 (373)
T 2fo1_E 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPTIY--NKSE 199 (373)
T ss_dssp SSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTC
T ss_pred cCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCCCCCccc--CCCC
Confidence 68999999999999998887776 78999999999999999999999 9999999999999999998 8999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcC---CCcccccCCCCCHHHHHHHcC---CHHHHHHHHhCCCcccc------cccccCC
Q 040660 77 GTPLHHAAKRGLERTVKLLLSYG---ANALVLNDDCQTPLEVARAKG---FTNVVRAIENHICIFSG------WLRELYG 144 (487)
Q Consensus 77 ~TpLh~Aa~~g~~~~v~~Ll~~g---a~~~~~d~~g~TpL~~A~~~g---~~~~v~~Ll~~ga~~~~------~~~d~~G 144 (487)
.||||+|+..|+.+++++|++.+ ++++..|..|+||||+|+..+ +.+++++|+++|++++. ...|..|
T Consensus 200 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g 279 (373)
T 2fo1_E 200 RSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKG 279 (373)
T ss_dssp CCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCC
T ss_pred CCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccC
Confidence 99999999999999999999988 899999999999999999998 89999999999999872 1256789
Q ss_pred CCHHHHHhhhcCCHHHHHHhhcCC-CCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 145 PGFLELLAPQLLSRKVWVAVLPTG-SRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 145 ~t~L~~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
.|||| +|+..++.+++++|+..+ ++.+..+..+..+++.+...+....+..|..
T Consensus 280 ~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 334 (373)
T 2fo1_E 280 RTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334 (373)
T ss_dssp CCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 99999 899999999999999876 8999888888899998888888888887764
No 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=9.9e-30 Score=243.96 Aligned_cols=202 Identities=19% Similarity=0.221 Sum_probs=171.2
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHH----cCCCCC----ccCCCCChHHHHHHhC--CCcHHHHHHHHHcCCCc-----
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCR----DGAGLE----WIDKEGKTPLIAACMN--PGLYDVAKTLIELGAKV----- 67 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~----~~d~~G~TpL~~A~~~--~g~~~~v~~Ll~~ga~~----- 67 (487)
.|..|+|+||+|++.|+.++|+.|++ .+++++ ..|..|+||||+|+.. .|+.+++++|+++|+++
T Consensus 9 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 9 PRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp --CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 57889999999999999999998887 466665 4588999999999963 38899999999998653
Q ss_pred --cc--cCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccC--------------CCCCHHHHHHHcCCHHHHHHHH
Q 040660 68 --DA--YRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLND--------------DCQTPLEVARAKGFTNVVRAIE 129 (487)
Q Consensus 68 --~~--~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~TpL~~A~~~g~~~~v~~Ll 129 (487)
+. .+.|..|.||||+|+..|+.++|++|+++|++++.++. .|+||||+|+..|+.++|++|+
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 168 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHH
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 22 22367899999999999999999999999999999997 7999999999999999999999
Q ss_pred h---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhcCCCCCC-------CCCCccchhccccccccc
Q 040660 130 N---HICIFSGWLRELYGPGFLELLAPQLLS---------RKVWVAVLPTGSRNP-------TKPFKLELAIYPSLLDAR 190 (487)
Q Consensus 130 ~---~ga~~~~~~~d~~G~t~L~~~a~~~~~---------~~~~~~Ll~~g~~~~-------~~~~~~~~~~~~~~~~~~ 190 (487)
+ +|++++ .+|..|.|||| +|+..++ .+++++|+.+|++.+ .++..+..+++.+...+.
T Consensus 169 ~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~ 245 (273)
T 2pnn_A 169 QNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGK 245 (273)
T ss_dssp HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred hcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhCh
Confidence 9 999999 99999999999 7777666 799999999999886 367788888888888888
Q ss_pred hHHHHHHHhcccCCCCC
Q 040660 191 PRMVIALWKANLEEPKF 207 (487)
Q Consensus 191 ~~~~~~l~~~~~~~~~~ 207 (487)
...+..|......+|..
T Consensus 246 ~~iv~~Ll~~ga~dp~~ 262 (273)
T 2pnn_A 246 IGVLAYILQREIHEPEC 262 (273)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred HHHHHHHHHCCCCCchh
Confidence 88888877665544443
No 55
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.96 E-value=1.4e-28 Score=243.39 Aligned_cols=190 Identities=20% Similarity=0.174 Sum_probs=147.9
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-------------
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDK-EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR------------- 71 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~------------- 71 (487)
+|+|+||.||+.|++++|++||++|+++|.++. .|+||||+|+.. |+.++|++||++|++++.++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence 478999999999999999999999999999876 599999999999 99999999999998876541
Q ss_pred ------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccc----------cCCCCCHHHHHHHcCCHH
Q 040660 72 ------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALVL----------NDDCQTPLEVARAKGFTN 123 (487)
Q Consensus 72 ------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpL~~A~~~g~~~ 123 (487)
.|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~ 182 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence 2567778888888888888888888888776643 345778888888888888
Q ss_pred HHHHHHh-CCCcccccccccCCCCHHHHHhhhcC---CHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 124 VVRAIEN-HICIFSGWLRELYGPGFLELLAPQLL---SRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 124 ~v~~Ll~-~ga~~~~~~~d~~G~t~L~~~a~~~~---~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
+|++|++ .|++++ .+|..|.|+|+.++.... ..+++++|+++|++.+.++..+...++.....+....+..|.
T Consensus 183 ~v~~LL~~~gad~n--~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll 259 (337)
T 4g8k_A 183 VLKILLDEMGADVN--ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLL 259 (337)
T ss_dssp HHHHHHHHSCCCTT--CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhccCCCcC--ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHH
Confidence 8888874 577777 777888888873332222 245677788888887777766777777666666666666554
No 56
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=2.7e-28 Score=228.18 Aligned_cols=195 Identities=23% Similarity=0.206 Sum_probs=176.8
Q ss_pred CCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 2 GLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.+|..|.|+||+|++.|+.+++++|++.|++++.+|..|.||||+|+.. |+.+++++|++.|++++... +..|.||||
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L~ 81 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTPLH 81 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCHHH
T ss_pred ccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCChhH
Confidence 4688999999999999999999999999999999999999999999999 99999999999999998762 566999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||||+++......+++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~ 159 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLMWAAYRTHSVDPT 159 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHHHHHCCSSTTH
T ss_pred HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHHHHHHhCChHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999444456668999
Q ss_pred HHhhcCCCCCCCCCC-ccchhccccccccchHHHHHHHhc
Q 040660 162 VAVLPTGSRNPTKPF-KLELAIYPSLLDARPRMVIALWKA 200 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 200 (487)
++|+..|.+.+..+. .+..+++.+...+....+..|...
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 199 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA 199 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 999999999887775 667777777777777777776643
No 57
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=4.3e-29 Score=249.70 Aligned_cols=160 Identities=17% Similarity=0.082 Sum_probs=141.1
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc----CCCCCc-----------------cCCCCChHHHHHHhCCC--cHHHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRD----GAGLEW-----------------IDKEGKTPLIAACMNPG--LYDVAKTLIE 62 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~----g~~~~~-----------------~d~~G~TpL~~A~~~~g--~~~~v~~Ll~ 62 (487)
+|.||||+|+..|+.++|++|+++ |++++. +|..|.||||+|+.. | +.+++++|++
T Consensus 83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~~~v~~Ll~ 161 (364)
T 3ljn_A 83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGL-GPEYLEMIKILVQ 161 (364)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHS-CGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHc-CCchHHHHHHHHH
Confidence 444555555555555555555554 444444 788999999999999 9 9999999999
Q ss_pred cCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCC-----cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc
Q 040660 63 LGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGAN-----ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSG 137 (487)
Q Consensus 63 ~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~-----~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~ 137 (487)
+|++++.+ |..|.||||+|+..|+.++|++|+++|++ ++.+|..|+||||+|+..|+.++|++|+++|++++
T Consensus 162 ~ga~~~~~--d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~- 238 (364)
T 3ljn_A 162 LGASPTAK--DKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVN- 238 (364)
T ss_dssp HTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTT-
T ss_pred cCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 99999998 99999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred cccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCC
Q 040660 138 WLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRN 171 (487)
Q Consensus 138 ~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~ 171 (487)
.+|..|.|||| +|+..++.+++++|+++|++.
T Consensus 239 -~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~~~~~ 270 (364)
T 3ljn_A 239 -MEDNEHTVPLY-LSVRAAMVLLTKELLQKTDVF 270 (364)
T ss_dssp -CCCTTSCCHHH-HHHHTCCHHHHHHHHHHSCHH
T ss_pred -CCCCCCCCHHH-HHHHhChHHHHHHHHHcCCch
Confidence 99999999999 999999999999999998875
No 58
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=1.1e-29 Score=239.09 Aligned_cols=164 Identities=14% Similarity=0.062 Sum_probs=123.8
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAA 84 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa 84 (487)
..|.||||.|++.|+.++++.||++|++++.. ..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNAV 78 (239)
T ss_dssp -----------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHH
Confidence 46999999999999999999999999999864 7899999999999 9999999999999999998 999999999999
Q ss_pred HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCC-CHHHHHh--hhcCCHHHH
Q 040660 85 KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGP-GFLELLA--PQLLSRKVW 161 (487)
Q Consensus 85 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~-t~L~~~a--~~~~~~~~~ 161 (487)
..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++|++++ .++..|. |||| +| ...++.+++
T Consensus 79 ~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQCS 155 (239)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHHH
Confidence 9999999999999999999999999999999999999999999999999999 8888777 9999 77 678899999
Q ss_pred HHhhcCCCCCCCCC
Q 040660 162 VAVLPTGSRNPTKP 175 (487)
Q Consensus 162 ~~Ll~~g~~~~~~~ 175 (487)
++|+..|++.+..+
T Consensus 156 ~~Ll~~~a~~~~~~ 169 (239)
T 1ycs_B 156 QFLYGVQEKMGIMN 169 (239)
T ss_dssp HHHHHHHHHTTTTG
T ss_pred HHHHHhhhcccccc
Confidence 99999999886654
No 59
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=3.2e-29 Score=242.29 Aligned_cols=181 Identities=15% Similarity=0.099 Sum_probs=164.2
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCC-CcHHHHH
Q 040660 5 QSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHG-GTPLHHA 83 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g-~TpLh~A 83 (487)
.+|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..| .||||+|
T Consensus 60 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~~t~L~~A 136 (285)
T 3kea_A 60 LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHA 136 (285)
T ss_dssp CTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGGGSHHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHH
Confidence 3689999999999999999999999999999999999999999999 9999999999999999998 8889 7999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH-HHHHhhhcCCHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF-LELLAPQLLSRKVWV 162 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~-L~~~a~~~~~~~~~~ 162 (487)
+..|+.+++++|+++|+++... ..|+||||+|+..|+.++|++|+++|++++ .+|..|.|| || +|...++.++++
T Consensus 137 ~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~~~~~~v~ 212 (285)
T 3kea_A 137 VMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDIEMLQ 212 (285)
T ss_dssp HHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHcCCHHHHH
Confidence 9999999999999999886322 289999999999999999999999999999 999999998 99 899999999999
Q ss_pred HhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 163 AVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 163 ~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
+|+++|++.+..+. .+...+...++..|..
T Consensus 213 ~Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~ 242 (285)
T 3kea_A 213 ALFKYDINIYSANL-------ENVLLDDAEIAKMIIE 242 (285)
T ss_dssp HHTTSCBCSTTTTG-------GGGTTTCHHHHHHHHH
T ss_pred HHHHcCCCCCCCCh-------hhhhcCCHHHHHHHHH
Confidence 99999999987772 2333556666666653
No 60
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.96 E-value=3.2e-29 Score=219.69 Aligned_cols=141 Identities=23% Similarity=0.233 Sum_probs=121.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCc-HHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGT-PLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~T-pLh 81 (487)
.++.|.|+||+|++.|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+ |..|.| |||
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttpL~ 83 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRPVH 83 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHH
Confidence 3678999999999999999999999999999999999999999985 7 9999999999999999998 999999 999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLE 149 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~ 149 (487)
+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++ .++..|.|+.+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~ 149 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE 149 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999987
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=4.6e-29 Score=237.33 Aligned_cols=193 Identities=18% Similarity=0.176 Sum_probs=166.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHH----HcCCCCCccC----CCCChHHHHHH---hCCCcHHHHHHHHHcCCC-----
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALC----RDGAGLEWID----KEGKTPLIAAC---MNPGLYDVAKTLIELGAK----- 66 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d----~~G~TpL~~A~---~~~g~~~~v~~Ll~~ga~----- 66 (487)
++..++|+||.|++.|+.+.|+.|+ +.|++++..+ ..|.||||+|+ .. |+.+++++|++.|++
T Consensus 1 ~~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchH
Confidence 3677999999999999999655555 4899998776 67999999999 67 999999999998854
Q ss_pred ----ccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccccc--------------CCCCCHHHHHHHcCCHHHHHHH
Q 040660 67 ----VDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLN--------------DDCQTPLEVARAKGFTNVVRAI 128 (487)
Q Consensus 67 ----~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~TpL~~A~~~g~~~~v~~L 128 (487)
.+....|..|+||||+|+..|+.++|++|+++|++++.+| ..|+||||+|+..|+.++|++|
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 2222226689999999999999999999999999999998 6899999999999999999999
Q ss_pred Hh---CCCcccccccccCCCCHHHHHhhhcCC---------HHHHHHhhcCCCCC-------CCCCCccchhcccccccc
Q 040660 129 EN---HICIFSGWLRELYGPGFLELLAPQLLS---------RKVWVAVLPTGSRN-------PTKPFKLELAIYPSLLDA 189 (487)
Q Consensus 129 l~---~ga~~~~~~~d~~G~t~L~~~a~~~~~---------~~~~~~Ll~~g~~~-------~~~~~~~~~~~~~~~~~~ 189 (487)
++ +|++++ .+|..|.|||| +|+..++ .+++++|+.+|++. +..+..+..+++.+...+
T Consensus 160 l~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 160 TENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp HHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HhccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcC
Confidence 99 999999 99999999999 7766555 69999999999987 567778888888888877
Q ss_pred chHHHHHHHh
Q 040660 190 RPRMVIALWK 199 (487)
Q Consensus 190 ~~~~~~~l~~ 199 (487)
....+..|..
T Consensus 237 ~~~~v~~Ll~ 246 (260)
T 3jxi_A 237 KIGIFQHIIR 246 (260)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 7777776654
No 62
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=6.3e-28 Score=225.71 Aligned_cols=192 Identities=20% Similarity=0.169 Sum_probs=177.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
.+..|.|+||+|+..|+.++|++|+++|++++..+ ..|.||||+|+.. |+.+++++|++.|++++.. |..|.||||
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~ 114 (240)
T 3eu9_A 38 PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGEGCSCIH 114 (240)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHH
Confidence 46789999999999999999999999999987655 4599999999999 9999999999999999988 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCC-HHHHHHHHhCCCccccccccc-CCCCHHHHHhhhcCCHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGF-TNVVRAIENHICIFSGWLREL-YGPGFLELLAPQLLSRK 159 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~-~~~v~~Ll~~ga~~~~~~~d~-~G~t~L~~~a~~~~~~~ 159 (487)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..++ .+++++|+++|++++ ..+. .|.|||| +|+..++.+
T Consensus 115 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~~~~~~~ 191 (240)
T 3eu9_A 115 LAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAVLAGNTT 191 (240)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHHHHTCHH
T ss_pred HHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHHHcCCHH
Confidence 9999999999999999999999999999999999997776 899999999999998 7786 8999999 999999999
Q ss_pred HHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHhc
Q 040660 160 VWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWKA 200 (487)
Q Consensus 160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (487)
++++|+++|++.+..+..+..++..+...+...++..|...
T Consensus 192 ~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 192 VISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 99999999999998888888888888888888888876643
No 63
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=8.2e-28 Score=233.32 Aligned_cols=159 Identities=28% Similarity=0.331 Sum_probs=143.6
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccC-----------
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYR----------- 71 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~----------- 71 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++..+
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 147 (299)
T 1s70_B 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAVNSEGDTPLDIAE 147 (299)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence 467899999999999999999999999999999999999999999999 99999999999999987652
Q ss_pred -----------------------------------------------CCCCCCcHHHHHHHhCCHHHHHHHHHcCCCccc
Q 040660 72 -----------------------------------------------PGRHGGTPLHHAAKRGLERTVKLLLSYGANALV 104 (487)
Q Consensus 72 -----------------------------------------------~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~ 104 (487)
.+..|.||||+|+..|+.+++++|++.|++++.
T Consensus 148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~ 227 (299)
T 1s70_B 148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227 (299)
T ss_dssp SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred hcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC
Confidence 124688999999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhc
Q 040660 105 LNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLP 166 (487)
Q Consensus 105 ~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~ 166 (487)
+|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|... ..+.+..|+.
T Consensus 228 ~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~t~l~-~A~~~-~~~~l~~l~~ 285 (299)
T 1s70_B 228 KDYDGWTPLHAAAHWGKEEACRILVENLCDME--AVNKVGQTAFD-VADED-ILGYLEELQK 285 (299)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTTT-SCCSG-GGHHHHHHHH
T ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHH-HHHHHHHHHH
Confidence 99999999999999999999999999999999 99999999999 77553 3444444443
No 64
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=5.2e-29 Score=232.84 Aligned_cols=175 Identities=19% Similarity=0.132 Sum_probs=148.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.+.++.|+||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+
T Consensus 17 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tpLh~ 93 (229)
T 2vge_A 17 ARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTPLHC 93 (229)
T ss_dssp TTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred cccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHH
Confidence 356788999999999999999999999999999999999999999999 9999999999999999988 8899999999
Q ss_pred HHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHH--HHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVA--RAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRK 159 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~ 159 (487)
|+..|+.+++++|++.|++++.++ .+|+||||+| +..|+.+++++|+++|++++ .+|..|.|+++ .+....
T Consensus 94 A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~--- 167 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF--- 167 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS---
T ss_pred HHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc---
Confidence 999999999999999999999986 5999999999 99999999999999999998 88888989988 333332
Q ss_pred HHHHhhcCCCC--CCCCCCccchhccccc
Q 040660 160 VWVAVLPTGSR--NPTKPFKLELAIYPSL 186 (487)
Q Consensus 160 ~~~~Ll~~g~~--~~~~~~~~~~~~~~~~ 186 (487)
..++|+..|++ .+.++..+..+++.+.
T Consensus 168 ~~~~ll~~ga~~~~~~~d~~G~TpL~~A~ 196 (229)
T 2vge_A 168 GDELSFREGESVTVLRRDGPEETDWWWAA 196 (229)
T ss_dssp TTBCCBCTTCEEEEEESSCTTCSSEEEEE
T ss_pred ccccCccccccccccccCCCcccHHHHHH
Confidence 23567777776 3444444444444444
No 65
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=3.6e-28 Score=207.87 Aligned_cols=127 Identities=24% Similarity=0.324 Sum_probs=79.6
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCC-CCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRH-GGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~-g~TpLh~ 82 (487)
|..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+ |.. |.||||+
T Consensus 9 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g~t~L~~ 84 (136)
T 1d9s_A 9 GGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATLTRPVHD 84 (136)
T ss_dssp CCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTTBCHHHH
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCCCCHHHH
Confidence 4556666666666666666666666666666666666666666665 5566666666666666655 555 6666666
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++|++
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 6666666666666666666666666666666666666666666666666553
No 66
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=8.1e-28 Score=213.99 Aligned_cols=140 Identities=28% Similarity=0.368 Sum_probs=129.6
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 108 (172)
T 3v30_A 32 PDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTPLLY 108 (172)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGF 147 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~ 147 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++. ..+..|.||
T Consensus 109 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p 171 (172)
T 3v30_A 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP 171 (172)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999988 788888776
No 67
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.95 E-value=5.1e-27 Score=232.09 Aligned_cols=186 Identities=25% Similarity=0.280 Sum_probs=163.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc----------CCCCChHHHHHHhCCCcHHHHHHHHH-cCCCccccC
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWI----------DKEGKTPLIAACMNPGLYDVAKTLIE-LGAKVDAYR 71 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~----------d~~G~TpL~~A~~~~g~~~~v~~Ll~-~ga~~~~~~ 71 (487)
.|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||+|+.. |+.++|++||+ .|++++.+
T Consensus 121 ~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~-g~~~~v~~LL~~~gad~n~~- 198 (337)
T 4g8k_A 121 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK-GHVEVLKILLDEMGADVNAC- 198 (337)
T ss_dssp BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH-TCHHHHHHHHHHSCCCTTCC-
T ss_pred hccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC-CCHHHHHHHHhccCCCcCcc-
Confidence 4678999999999999999999999999988754 45689999999999 99999999995 59999998
Q ss_pred CCCCCCcHHHHHHHhCC----HHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC-CCcccccccccCCCC
Q 040660 72 PGRHGGTPLHHAAKRGL----ERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH-ICIFSGWLRELYGPG 146 (487)
Q Consensus 72 ~d~~g~TpLh~Aa~~g~----~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~-ga~~~~~~~d~~G~t 146 (487)
|..|.|+||+++..+. ..++++|+++|++++.+|..|+||||+|+..|+.++|++|+++ |++++ .+|..|.|
T Consensus 199 -d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn--~~d~~G~T 275 (337)
T 4g8k_A 199 -DNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN--DTDSDGKT 275 (337)
T ss_dssp -CTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT--CBCTTSCB
T ss_pred -CCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc--CcCCCCCC
Confidence 9999999999887654 4688999999999999999999999999999999999999985 78998 99999999
Q ss_pred HHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 147 FLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 147 ~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
||| +|+..++.+++++|+++|++++.++ .++.+...+...++..|..
T Consensus 276 pL~-~A~~~g~~~iv~~Ll~~GAd~n~~~-----~L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 276 ALL-LAVELKLKKIAELLCKRGASTDCGD-----LVMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHH-HHHHTTCHHHHHHHHTTSCSSTTCC-----HHHHHHHTTCHHHHHHHHH
T ss_pred HHH-HHHHcCCHHHHHHHHHCCCCCCCCC-----HHHHHHHcCCHHHHHHHHH
Confidence 999 8999999999999999999987665 4455555666667766654
No 68
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.95 E-value=2.5e-27 Score=202.55 Aligned_cols=126 Identities=25% Similarity=0.337 Sum_probs=120.5
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
...+.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence 45688999999999999999999999999999999999999999999 9999999999999999998 89999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 132 (487)
+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999876
No 69
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=7.3e-28 Score=237.41 Aligned_cols=170 Identities=16% Similarity=0.106 Sum_probs=122.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc---HHHHHHHHHcC-CCccccCCCCCCCc
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL---YDVAKTLIELG-AKVDAYRPGRHGGT 78 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~---~~~v~~Ll~~g-a~~~~~~~d~~g~T 78 (487)
.|..|+||||+|+..|+.++|++||++|++++.+|..|+||||+|+.. |+ .++++.|++.+ ++++.+ |..|+|
T Consensus 127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~--d~~g~t 203 (327)
T 1sw6_A 127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE--DSMNRT 203 (327)
T ss_dssp CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE--CTTCCC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC--CCCCCC
Confidence 356777777777777777777777777777777777777777777777 66 56666666665 567766 777777
Q ss_pred HHHHHHH----hCCHHHHHHHHHc--------------------CCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 79 PLHHAAK----RGLERTVKLLLSY--------------------GANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 79 pLh~Aa~----~g~~~~v~~Ll~~--------------------ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
|||+|+. .|+.+++++|++. |++++.+|..|+||||+|+. +++|+++ +
T Consensus 204 pLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~ 275 (327)
T 1sw6_A 204 ILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M 275 (327)
T ss_dssp HHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T
T ss_pred HHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C
Confidence 7777777 7777777777765 67777777777777777764 6777776 4
Q ss_pred ccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccc
Q 040660 135 FSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSL 186 (487)
Q Consensus 135 ~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~ 186 (487)
++ .+|..|+|||| +|+..++.+++++|+++|++.+.++..+..+++.+.
T Consensus 276 ~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 324 (327)
T 1sw6_A 276 LN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324 (327)
T ss_dssp TT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred CC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 55 88999999999 899999999999999999999888877777766554
No 70
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=1.5e-27 Score=203.90 Aligned_cols=134 Identities=19% Similarity=0.294 Sum_probs=129.6
Q ss_pred CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCC-
Q 040660 30 GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDD- 108 (487)
Q Consensus 30 g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~- 108 (487)
+++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 578999999999999999999 9999999999999999998 8999999999999 9999999999999999999999
Q ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660 109 CQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR 170 (487)
Q Consensus 109 g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~ 170 (487)
|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.+++++|+++|++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999 99999999999 89999999999999998875
No 71
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=2.6e-28 Score=220.38 Aligned_cols=156 Identities=15% Similarity=0.091 Sum_probs=141.2
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHhCCCcH----HHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAGLEWID-KEGKTPLIAACMNPGLY----DVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpL~~A~~~~g~~----~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
+.++|+.|++.|+.+.++.++..+. +.++ ..|+||||+|+.. |+. +++++||++|+++|.+ |..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHHH
Confidence 4578999999999999999998864 4556 7899999999999 764 5999999999999998 999999999
Q ss_pred HHHHhCC------HHHHHHHHHcCCCcccccCCCC-CHHHHHHHcC-----CHHHHHHHHh-CCCcccccccccCCCCHH
Q 040660 82 HAAKRGL------ERTVKLLLSYGANALVLNDDCQ-TPLEVARAKG-----FTNVVRAIEN-HICIFSGWLRELYGPGFL 148 (487)
Q Consensus 82 ~Aa~~g~------~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~d~~G~t~L 148 (487)
+|+..|+ .+++++|+++|++++.+|..|+ ||||+|+..+ +.+++++|++ +|++++ .+|..|.|||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~TpL 158 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTAL 158 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCHH
Confidence 9999997 6889999999999999999999 9999999954 4579999999 999999 9999999999
Q ss_pred HHHhhhcCCHHHHHHhhcCCCC
Q 040660 149 ELLAPQLLSRKVWVAVLPTGSR 170 (487)
Q Consensus 149 ~~~a~~~~~~~~~~~Ll~~g~~ 170 (487)
| +|...++.+++++|......
T Consensus 159 ~-~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 159 E-FVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp H-HHHTTTCHHHHHHHHHHHHH
T ss_pred H-HHHHcCCHHHHHHHHHHHHH
Confidence 9 99999999999999866543
No 72
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=8.4e-27 Score=195.61 Aligned_cols=126 Identities=37% Similarity=0.490 Sum_probs=122.1
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+|+|+||+|++.|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|++.|++++.+ |..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence 589999999999999999999999999999999999999999999 9999999999999999988 8999999999999
Q ss_pred hCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 86 RGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999985
No 73
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=1.1e-27 Score=230.45 Aligned_cols=187 Identities=18% Similarity=0.156 Sum_probs=173.4
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCC-CccccCCCCCCCcHHHHH
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAG--LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGA-KVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga-~~~~~~~d~~g~TpLh~A 83 (487)
..+++|.|+..|+.+.++.|++.+.+ +|.+|..|+||||+|+.. |+.+++++|++.|+ +++.. |..|.||||+|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~a 152 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIMLT 152 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHHHG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHHHH
Confidence 45677889999999999999988766 899999999999999999 99999999999998 99988 99999999999
Q ss_pred H-----HhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCH
Q 040660 84 A-----KRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSR 158 (487)
Q Consensus 84 a-----~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~ 158 (487)
+ ..++.+++++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|+..++.
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~~ 229 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGHK 229 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCCH
Confidence 9 6789999999999999999999999999999999999999999999999999 99999999999 89999999
Q ss_pred HHHHHhhc-CCCCCCCCCCccchhccccccccchHHHHHHHh
Q 040660 159 KVWVAVLP-TGSRNPTKPFKLELAIYPSLLDARPRMVIALWK 199 (487)
Q Consensus 159 ~~~~~Ll~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (487)
+++++|+. .|++.+.++..+..++..+...+....+..|..
T Consensus 230 ~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 271 (276)
T 4hbd_A 230 EIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYS 271 (276)
T ss_dssp HHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999 899999999888889888888777777776653
No 74
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=2e-26 Score=202.72 Aligned_cols=128 Identities=28% Similarity=0.285 Sum_probs=122.4
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|+||||+|+. |+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 34 ~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 109 (162)
T 1ihb_A 34 QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNEGNLPLHL 109 (162)
T ss_dssp CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHH
Confidence 46789999999999 999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCC-cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 83 AAKRGLERTVKLLLSYGAN-ALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 110 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999999999998 699999999999999999999999999999985
No 75
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=5.1e-26 Score=201.92 Aligned_cols=127 Identities=27% Similarity=0.357 Sum_probs=122.9
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 43 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~ 119 (169)
T 2y1l_E 43 EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNAN--DMEGHTPLHL 119 (169)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHI 132 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 132 (487)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|
T Consensus 120 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999876
No 76
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=3.3e-26 Score=207.43 Aligned_cols=161 Identities=22% Similarity=0.204 Sum_probs=150.4
Q ss_pred CCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCC
Q 040660 32 GLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT 111 (487)
Q Consensus 32 ~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~T 111 (487)
.+|.+|..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+..|+.+++++|++.|++++.+|..|+|
T Consensus 27 ~~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t 103 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKT 103 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCC
T ss_pred HHhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Confidence 3577899999999999999 9999999999999999988 899999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccch
Q 040660 112 PLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARP 191 (487)
Q Consensus 112 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~ 191 (487)
|||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+.++..+..++..+...+..
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 180 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQ 180 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcH
Confidence 9999999999999999999999999 99999999999 89999999999999999999998888888888887777777
Q ss_pred HHHHHHH
Q 040660 192 RMVIALW 198 (487)
Q Consensus 192 ~~~~~l~ 198 (487)
..+..|.
T Consensus 181 ~~v~~Ll 187 (192)
T 2rfm_A 181 EVIKIFT 187 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766554
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=2.3e-26 Score=206.14 Aligned_cols=136 Identities=21% Similarity=0.229 Sum_probs=130.2
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 35 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~ 111 (179)
T 3f6q_A 35 GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAV--NEHGNVPLHY 111 (179)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHH
Confidence 467899999999999999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELY 143 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~ 143 (487)
|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++ ..+..
T Consensus 112 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~--~~~~~ 170 (179)
T 3f6q_A 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN--RIPYK 170 (179)
T ss_dssp HHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS--CBCCC
T ss_pred HHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc--cCCcc
Confidence 999999999999999999999999999999999999999999999999999988 44433
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.93 E-value=3.9e-26 Score=201.64 Aligned_cols=127 Identities=32% Similarity=0.450 Sum_probs=120.8
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 114 (165)
T 3twr_A 38 IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSY-GHYEVAELLVKHGAVVNVA--DLWKFTPLHE 114 (165)
T ss_dssp TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred cccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHc-CcHHHHHHHHhCCCCCCCc--CCCCCCHHHH
Confidence 456788999999999999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga 133 (487)
|+..|+.+++++|+++|++++.+|.+|+||||+|+. |+.+++++|+++|+
T Consensus 115 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 999999999999999999999999999999999876 99999999999986
No 79
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=8.6e-26 Score=196.97 Aligned_cols=123 Identities=24% Similarity=0.366 Sum_probs=119.8
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 106 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE-GHANIVEVLLKHGADVNAK--DMLKMTALHW 106 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-ChHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 467799999999999999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAI 128 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~L 128 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|
T Consensus 107 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999999999999999999999999999999987
No 80
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.93 E-value=2.2e-26 Score=215.04 Aligned_cols=191 Identities=13% Similarity=0.014 Sum_probs=150.1
Q ss_pred HHHHHHcCCCCCccC---CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 040660 23 IKALCRDGAGLEWID---KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYG 99 (487)
Q Consensus 23 v~~Ll~~g~~~~~~d---~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~g 99 (487)
|+.||++|++++..+ ..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+++++|++.|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 578899998876554 4677899999999 9999999999999999998 999999999999999999999999999
Q ss_pred CCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccc-cCCCCHHHHHh--hhcCCHHHHHHhhcCCCCCCCCCC
Q 040660 100 ANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRE-LYGPGFLELLA--PQLLSRKVWVAVLPTGSRNPTKPF 176 (487)
Q Consensus 100 a~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d-~~G~t~L~~~a--~~~~~~~~~~~Ll~~g~~~~~~~~ 176 (487)
++++.+|..|+||||+|+..|+.++|++|+++|++++ .++ ..|.|||| +| ...++.+++++|++.|++.+..+.
T Consensus 78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~ 154 (229)
T 2vge_A 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS 154 (229)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence 9999999999999999999999999999999999998 776 69999999 88 899999999999999999988876
Q ss_pred ccchhccccccccchHHHHHHHhcc--cCCCCCCCCCCceeeecCC
Q 040660 177 KLELAIYPSLLDARPRMVIALWKAN--LEEPKFQHSDPSVTIVDNS 220 (487)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~i~~~~ 220 (487)
.+..+++........+.++ ..... +...+..+.+++.......
T Consensus 155 ~~~~~l~~~~~~~~~~~ll-~~ga~~~~~~~d~~G~TpL~~A~~~g 199 (229)
T 2vge_A 155 GAVYALWDYSAEFGDELSF-REGESVTVLRRDGPEETDWWWAALHG 199 (229)
T ss_dssp GEEEESSCBCCSSTTBCCB-CTTCEEEEEESSCTTCSSEEEEEETT
T ss_pred CchHHHHHHhhccccccCc-cccccccccccCCCcccHHHHHHHcC
Confidence 6655555433222211111 11222 4445566777777666444
No 81
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=2.4e-26 Score=216.14 Aligned_cols=148 Identities=20% Similarity=0.205 Sum_probs=133.7
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHA 83 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~A 83 (487)
+..|.|+||+|+..|+.++|++||+.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|
T Consensus 34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A 110 (239)
T 1ycs_B 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA 110 (239)
T ss_dssp ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence 45689999999999999999999999999999999999999999999 9999999999999999998 99999999999
Q ss_pred HHhCCHHHHHHHHHcCCCcccccCCCC-CHHHHH--HHcCCHHHHHHHHhCCCccccccc---------ccCCCCHHHHH
Q 040660 84 AKRGLERTVKLLLSYGANALVLNDDCQ-TPLEVA--RAKGFTNVVRAIENHICIFSGWLR---------ELYGPGFLELL 151 (487)
Q Consensus 84 a~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpL~~A--~~~g~~~~v~~Ll~~ga~~~~~~~---------d~~G~t~L~~~ 151 (487)
+..|+.+++++|+++|++++.+|..|. ||||+| +..|+.+++++|+++|++++ .. +..+.++++ +
T Consensus 111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L 187 (239)
T 1ycs_B 111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L 187 (239)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence 999999999999999999999998887 999999 88999999999999999877 44 556777777 5
Q ss_pred hhhcCC
Q 040660 152 APQLLS 157 (487)
Q Consensus 152 a~~~~~ 157 (487)
+...+.
T Consensus 188 a~~~G~ 193 (239)
T 1ycs_B 188 PMKEGD 193 (239)
T ss_dssp CBCSSC
T ss_pred cccCCC
Confidence 544443
No 82
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=5.6e-26 Score=194.28 Aligned_cols=132 Identities=20% Similarity=0.248 Sum_probs=89.7
Q ss_pred CCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCC
Q 040660 30 GAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDC 109 (487)
Q Consensus 30 g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g 109 (487)
|+|+ .+|..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 76 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence 4555 5667777777777777 7777777777777777766 6677777777777777777777777777777777777
Q ss_pred CCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 110 QTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 110 ~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...+..+++.+|...+
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC----
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhccccc
Confidence 777777777777777777777777776 67777777777 666666666666555443
No 83
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=1.8e-26 Score=197.32 Aligned_cols=128 Identities=30% Similarity=0.404 Sum_probs=119.6
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|+|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~ 82 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLHD 82 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHHH
Confidence 478899999999999999999999999999999999999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHIC 133 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga 133 (487)
|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|.+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 999999999999999999999999999999999999999999988877654
No 84
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.7e-25 Score=194.18 Aligned_cols=124 Identities=27% Similarity=0.397 Sum_probs=120.3
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 32 ~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 107 (156)
T 1bd8_A 32 LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTGALPIHL 107 (156)
T ss_dssp CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHH
Confidence 46789999999 999999999999999999999999999999999999 9999999999999999998 8999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENH 131 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ 131 (487)
|+..|+.+++++|++. ++++.+|.+|+||||+|+..|+.+++++|+++
T Consensus 108 A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 108 AVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp HHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred HHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999 99999999999999999999999999999975
No 85
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=5.5e-25 Score=194.60 Aligned_cols=154 Identities=19% Similarity=0.133 Sum_probs=144.5
Q ss_pred CCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH
Q 040660 39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118 (487)
Q Consensus 39 ~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~ 118 (487)
.|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+..|+.+++++|++.|++++..|..|+||||+|+.
T Consensus 2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 588999999999 9999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHH
Q 040660 119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALW 198 (487)
Q Consensus 119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 198 (487)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++.+..+..+..++..+...+....+..|.
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999 99999999999 899999999999999999999888888888888887777777766554
No 86
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=1.4e-25 Score=188.11 Aligned_cols=113 Identities=27% Similarity=0.350 Sum_probs=100.0
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
++..|+|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~ 79 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLS 79 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence 456788999999999999999999999999999999999999999999 9999999999999999987 8899999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~ 118 (487)
|+..|+.+++++|+++|++++.+|.+|+||||+|..
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence 999999999999999999999999999999999843
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=3.6e-25 Score=189.10 Aligned_cols=127 Identities=21% Similarity=0.229 Sum_probs=120.4
Q ss_pred cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115 (487)
Q Consensus 36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~ 115 (487)
....|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+
T Consensus 10 ~~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred ccccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 345688999999999 9999999999999999998 8999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCC
Q 040660 116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTG 168 (487)
Q Consensus 116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g 168 (487)
|+..|+.+++++|+++|++++ .+|..|.|||| +|...++.+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999 99999999999 899999999999999876
No 88
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=9.4e-26 Score=197.53 Aligned_cols=140 Identities=21% Similarity=0.218 Sum_probs=120.9
Q ss_pred CCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCC-
Q 040660 33 LEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQT- 111 (487)
Q Consensus 33 ~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~T- 111 (487)
.+..+..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+ .|+.+++++|+++|++++.+|..|+|
T Consensus 5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR 80 (156)
T ss_dssp -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 345678899999999999 9999999999999999998 899999999986 99999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccc
Q 040660 112 PLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLE 179 (487)
Q Consensus 112 pL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~ 179 (487)
|||+|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+++|++.+.++..+.
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~ 145 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARI 145 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC-----------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcC
Confidence 9999999999999999999999999 99999999999 89999999999999999999877664433
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.92 E-value=1.4e-25 Score=202.00 Aligned_cols=140 Identities=22% Similarity=0.209 Sum_probs=129.5
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCC-CCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG-RHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~TpLh~ 82 (487)
+.+|+||||+|++.|+.++++.|++ |++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ | ..|+||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHR--DMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCCHHHH
Confidence 4578999999999999999999999 999999999999999999999 9999999999999999988 6 889999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.+++++|+++|++++.+|.+|+||||+|+..++ ...+.++|+ +++..+..++++
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------~~~~~~~l~-~a~~~~~~~i~~ 176 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQ-FGRRIGLEKVIN 176 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-------------------TCCCCSHHH-HHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-------------------CcccccHHH-HHHHcCHHHHHH
Confidence 999999999999999999999999999999999987432 234679999 899999999999
Q ss_pred HhhcC
Q 040660 163 AVLPT 167 (487)
Q Consensus 163 ~Ll~~ 167 (487)
+|.++
T Consensus 177 ~L~~~ 181 (183)
T 3deo_A 177 VLEGQ 181 (183)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99764
No 90
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.92 E-value=5.8e-26 Score=210.85 Aligned_cols=135 Identities=23% Similarity=0.341 Sum_probs=110.3
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHc-CCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIEL-GAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~-ga~~~~~~~d~~g~TpLh~ 82 (487)
+.+|.|+||+|+..|+.++|++|++.|++++.+|..|.||||+|+.. |+.+++++|++. |++++.+ |..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCCHHHH
Confidence 45678999999999999999999999999999999999999999999 999999999998 8999987 8899999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELY 143 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~ 143 (487)
|+..|+.+++++|+++|++++.+|.+|+||||+|+..++.++++.|+++++... ..+..
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~--~~~~~ 205 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT--LSNAE 205 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh--ccchh
Confidence 999999999999999999999999999999999999999999999999988876 55543
No 91
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=9.7e-25 Score=182.92 Aligned_cols=126 Identities=35% Similarity=0.450 Sum_probs=122.3
Q ss_pred CCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHH
Q 040660 39 EGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARA 118 (487)
Q Consensus 39 ~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~ 118 (487)
+|+||||+|+.. |+.+++++|+++|++++.. |..|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+.
T Consensus 1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 589999999999 9999999999999999988 8999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660 119 KGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR 170 (487)
Q Consensus 119 ~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~ 170 (487)
.|+.+++++|+++|++++ .+|..|.|||+ +|...++.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999 99999999999 89999999999999999875
No 92
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=2.6e-26 Score=207.24 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=119.5
Q ss_pred CCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHhCCCc------HHHHHHHHHcCCCccccCCCC
Q 040660 5 QSKEELLYQQVNYGNV----EGIKALCRDGAGLEWIDKEGKTPLIAACMNPGL------YDVAKTLIELGAKVDAYRPGR 74 (487)
Q Consensus 5 ~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~------~~~v~~Ll~~ga~~~~~~~d~ 74 (487)
..|+||||+|+..|+. +++++||++|+++|.+|..|+||||+|+.. ++ .+++++||++|+++|.+ |.
T Consensus 36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin~~--d~ 112 (186)
T 3t8k_A 36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADITAL--YK 112 (186)
T ss_dssp HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSSSC--BG
T ss_pred cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCCcc--CC
Confidence 5699999999999985 599999999999999999999999999998 65 68999999999999998 99
Q ss_pred CCC-cHHHHHHHhC-----CHHHHHHHHH-cCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660 75 HGG-TPLHHAAKRG-----LERTVKLLLS-YGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 75 ~g~-TpLh~Aa~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 136 (487)
.|. ||||+|+..+ +.+++++|++ +|+|++.+|..|+||||+|+..|+.++|++|+++..+.+
T Consensus 113 ~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 113 PYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp GGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred CcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999 9999999944 4679999999 999999999999999999999999999999998876665
No 93
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.92 E-value=1.7e-25 Score=220.46 Aligned_cols=194 Identities=14% Similarity=-0.018 Sum_probs=154.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhC
Q 040660 9 ELLYQQVNYGNVEGIKALCRDGAGLEW-IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRG 87 (487)
Q Consensus 9 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g 87 (487)
+.+|+|+..+..+++++|++.|+++|. +|..|+||||+|+.. |+.++|++||++|++++.+ |..|+||||+|+..|
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV 175 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence 345788888889999999999999999 899999999999999 9999999999999999998 999999999999999
Q ss_pred C---HHHHHHHHHcC-CCcccccCCCCCHHHHHHH----cCCHHHHHHHHhC--------------------CCcccccc
Q 040660 88 L---ERTVKLLLSYG-ANALVLNDDCQTPLEVARA----KGFTNVVRAIENH--------------------ICIFSGWL 139 (487)
Q Consensus 88 ~---~~~v~~Ll~~g-a~~~~~d~~g~TpL~~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~~ 139 (487)
+ .++++.|++.+ ++++.+|..|+||||+|+. .|+.+++++|++. |++++ .
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~ 253 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D 253 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence 8 78888899887 7899999999999999999 9999999999988 78888 8
Q ss_pred cccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCccchhccccccccchHHHHHHHh--cccCCCCCCCCCCceee
Q 040660 140 RELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIALWK--ANLEEPKFQHSDPSVTI 216 (487)
Q Consensus 140 ~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~i 216 (487)
++..|.|||| .|.. +++|+.+ +.+.++..+..+++.+...+....+..|.. +.++..+..+.+|+.+.
T Consensus 254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323 (327)
T ss_dssp ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGT
T ss_pred ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence 9999999999 5553 7888887 466677788888888888888888877764 44555556666666543
No 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=4.7e-25 Score=207.99 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=132.0
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCC-CCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPG-RHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d-~~g~TpLh~ 82 (487)
+.+|.||||+|++.|+.++|+.||+ |+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+ | ..|.||||+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~~g~t~L~~ 117 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHR--DMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CSSSCCCHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcC--CCCCCCCHHHH
Confidence 3478999999999999999999999 999999999999999999999 9999999999999999988 6 889999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWV 162 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~ 162 (487)
|+..|+.++|++|+++|++++.+|..|+||||+|+.. .....+.|||+ +|+..++.++++
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv~ 177 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVIN 177 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHHH
Confidence 9999999999999999999999999999999999852 23356789999 899999999999
Q ss_pred HhhcCCCC
Q 040660 163 AVLPTGSR 170 (487)
Q Consensus 163 ~Ll~~g~~ 170 (487)
+|+..+.+
T Consensus 178 ~L~~~~~~ 185 (244)
T 3ui2_A 178 VLEGQVFE 185 (244)
T ss_dssp HHHHHHEE
T ss_pred HHHHhccc
Confidence 99976544
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=211.72 Aligned_cols=140 Identities=19% Similarity=0.158 Sum_probs=125.1
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCCCCc
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAGLEW------IDKEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRHGGT 78 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~------~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~T 78 (487)
..++|+.|+..|+.+.|+.|++.|++++. .|..|.||||+|+..+ |+.+++++||++|+++|.+ |..|.|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCCCC
Confidence 45889999999999999999999999998 6899999999999852 7899999999999999998 899999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660 79 PLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS 157 (487)
Q Consensus 79 pLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~ 157 (487)
|||+|+..|+.++|++||++|++++.+|.+|+||||+|+..|+.+++++|+++|++ .|.|||| +|+..++
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCC
Confidence 99999999999999999999999999999999999999999999999999998875 4789999 6766554
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=5.6e-24 Score=178.28 Aligned_cols=111 Identities=23% Similarity=0.220 Sum_probs=105.0
Q ss_pred CCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHH
Q 040660 37 DKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVA 116 (487)
Q Consensus 37 d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A 116 (487)
+..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence 56789999999999 9999999999999999998 89999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660 117 RAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP 153 (487)
Q Consensus 117 ~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~ 153 (487)
+..|+.++|++|+++|++++ .+|..|.|||| +|.
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~ 114 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATD 114 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCC
T ss_pred HHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhC
Confidence 99999999999999999999 99999999999 663
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=1e-23 Score=210.06 Aligned_cols=144 Identities=21% Similarity=0.302 Sum_probs=120.7
Q ss_pred CchHHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 6 SKEELLYQQVNY-GNVEGIKALCRDGAGLEWID--KEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 6 ~g~t~L~~Aa~~-g~~~~v~~Ll~~g~~~~~~d--~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.+.|+||+|+.. |+.++|++||++|+++|..+ ..|.||||+|+.. |+.+++++||++|+++|.+ |..|.||||+
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~TpLh~ 274 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGPLHH 274 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 456899999999 99999999999999999998 8999999999999 9999999999999999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc-ccccccCCCCHHHHHhh
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS-GWLRELYGPGFLELLAP 153 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~~d~~G~t~L~~~a~ 153 (487)
|+..|+.+++++||++|++++.+|.+|+||||+|+..|+.++|++|+..+.... ....+..+.|+|+ ++.
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~ 345 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFR 345 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHH
Confidence 999999999999999999999999999999999999999999999998874422 1145567788888 443
No 98
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.90 E-value=1.6e-23 Score=218.02 Aligned_cols=127 Identities=20% Similarity=0.199 Sum_probs=119.8
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCChHHHHHHh---CCCcHHHHHHHHHcCCCccccCCCCCCC
Q 040660 7 KEELLYQQVNYGNVEGIKALCRDGAGLEWI------DKEGKTPLIAACM---NPGLYDVAKTLIELGAKVDAYRPGRHGG 77 (487)
Q Consensus 7 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------d~~G~TpL~~A~~---~~g~~~~v~~Ll~~ga~~~~~~~d~~g~ 77 (487)
..+.||.|+..|+.+.|+.||+.|+++|.. |..|.||||+||. . |+.+++++||++|+++|.+ |..|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~-g~~~~v~~Ll~~ga~vn~~--d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ-ASLPLVDFIIQNGGHLDAK--AADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCT-TTHHHHHHHHHHSCCTTCC--CSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhccc-ccHHHHHHHHHcCCCCCcc--CCCCC
Confidence 457899999999999999999999999987 8899999999976 7 9999999999999999998 99999
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCccc
Q 040660 78 TPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFS 136 (487)
Q Consensus 78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~ 136 (487)
||||+|+..|+.++|++||++|++++.+|.+|+||||+|+..|+.+++++|+++|++++
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999987
No 99
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=8.9e-26 Score=225.65 Aligned_cols=157 Identities=15% Similarity=0.069 Sum_probs=134.2
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCc---cccCCCCCCC
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGL---EWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKV---DAYRPGRHGG 77 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~---~~~~~d~~g~ 77 (487)
+.+++||||+|++.|+.++|++|+++|+.. +..+..|.||||+|+.. |+.++|++|+++|+++ +.. +.+ .
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~-~ 164 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN-Y 164 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH-H
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC-C
Confidence 345789999999999999999999998732 24456788999999999 9999999999999862 332 222 9
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCCccc--ccCCCCCHHHHHH-HcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhh
Q 040660 78 TPLHHAAKRGLERTVKLLLSYGANALV--LNDDCQTPLEVAR-AKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQ 154 (487)
Q Consensus 78 TpLh~Aa~~g~~~~v~~Ll~~ga~~~~--~d~~g~TpL~~A~-~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~ 154 (487)
||||+|+..|+.++|++|+++|++++. .|..|+||||+|+ .+|+.++|++|+++|++ |.|||| .|+.
T Consensus 165 TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~-~Aa~ 234 (376)
T 2aja_A 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEI-HEFE 234 (376)
T ss_dssp HHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHH-CTTT
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHH-HHHH
Confidence 999999999999999999999999988 8999999999999 99999999999998743 679999 9999
Q ss_pred cCCHHHHHHhhcCCCCCCCC
Q 040660 155 LLSRKVWVAVLPTGSRNPTK 174 (487)
Q Consensus 155 ~~~~~~~~~Ll~~g~~~~~~ 174 (487)
.++.+++++|+++|++.+..
T Consensus 235 ~g~~evv~lL~~~ga~~~~~ 254 (376)
T 2aja_A 235 YGEKYVNPFIARHVNRLKEM 254 (376)
T ss_dssp TTTTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcccccc
Confidence 99999999999998876443
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=4.3e-24 Score=198.20 Aligned_cols=134 Identities=17% Similarity=0.167 Sum_probs=117.0
Q ss_pred cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHc-CCCcccccCCCCCHHH
Q 040660 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSY-GANALVLNDDCQTPLE 114 (487)
Q Consensus 36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpL~ 114 (487)
.+..|.||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+..|+.++|++|++. |++++.+|..|+||||
T Consensus 69 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred ccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 456789999999999 9999999999999999988 89999999999999999999999999 9999999999999999
Q ss_pred HHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCC
Q 040660 115 VARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKP 175 (487)
Q Consensus 115 ~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~ 175 (487)
+|+..|+.++|++|+++|++++ .+|..|.|||| +|...+..++++.|+..|+.....+
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence 9999999999999999999999 99999999999 8999999999999999999875443
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.89 E-value=1.4e-22 Score=194.85 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=89.4
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCC------CccCCCCChHHHHHHhCC--CcHHHHHHHHHcCCCccccCCCCCCCcH
Q 040660 8 EELLYQQVNYGNVEGIKALCRDGAGL------EWIDKEGKTPLIAACMNP--GLYDVAKTLIELGAKVDAYRPGRHGGTP 79 (487)
Q Consensus 8 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~------~~~d~~G~TpL~~A~~~~--g~~~~v~~Ll~~ga~~~~~~~d~~g~Tp 79 (487)
.++|+.|+..|+.+.++.+++.|+++ +..|..|.||||+|+..+ |+.+++++|+++|+++|.+ |..|.||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence 35677777777777777777777763 333666777777777763 4667777777777777766 6777777
Q ss_pred HHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHHHHHHHHhCCCc
Q 040660 80 LHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTNVVRAIENHICI 134 (487)
Q Consensus 80 Lh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~ 134 (487)
||+|+..|+.++|++|+++|++++.+|.+|+||||+|+..|+.++|++|+++|++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777777777777777777777777777777777777777777777777777664
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=5.3e-25 Score=198.12 Aligned_cols=137 Identities=24% Similarity=0.193 Sum_probs=118.4
Q ss_pred HHHcCCHHHHHHHHHcCCC--CC---------ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 14 QVNYGNVEGIKALCRDGAG--LE---------WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 14 Aa~~g~~~~v~~Ll~~g~~--~~---------~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
|++.|..+.+++|++.+.. .. ..+..|.||||+|+.. |+.+++++|++ |++++.+ |..|+||||+
T Consensus 7 aa~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~ 82 (183)
T 3deo_A 7 GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLF 82 (183)
T ss_dssp EEEEETTTEEEEEEEETTCCCCEEEEGGGSCHHHHHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHH
T ss_pred HHHhcCCchhHHHHHHhCCCCccccchhcccccCCCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHH
Confidence 3455566666666654322 11 1356899999999999 99999999999 9999998 9999999999
Q ss_pred HHHhCCHHHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCC
Q 040660 83 AAKRGLERTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLS 157 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~ 157 (487)
|+..|+.+++++|+++|++++.+| .+|+||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|...++
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~ 155 (183)
T 3deo_A 83 VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILK 155 (183)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhcc
Confidence 999999999999999999999998 899999999999999999999999999999 99999999999 6655433
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.88 E-value=2.7e-22 Score=159.25 Aligned_cols=91 Identities=41% Similarity=0.574 Sum_probs=59.4
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHc
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAK 119 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~ 119 (487)
|+||||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..
T Consensus 2 g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 2 GRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN 78 (93)
T ss_dssp -CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred CCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence 56666666666 6666666666666666665 66666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHhCCC
Q 040660 120 GFTNVVRAIENHIC 133 (487)
Q Consensus 120 g~~~~v~~Ll~~ga 133 (487)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 66666666666665
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=3.7e-22 Score=158.44 Aligned_cols=93 Identities=42% Similarity=0.552 Sum_probs=89.1
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHH
Q 040660 6 SKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAK 85 (487)
Q Consensus 6 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~ 85 (487)
+|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHH
Confidence 589999999999999999999999999999999999999999999 9999999999999999998 9999999999999
Q ss_pred hCCHHHHHHHHHcCCC
Q 040660 86 RGLERTVKLLLSYGAN 101 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~ 101 (487)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999975
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=2.6e-21 Score=185.93 Aligned_cols=167 Identities=13% Similarity=-0.034 Sum_probs=141.9
Q ss_pred CCCCCchHHHHHHHHcCCHHHHHHHHHcCC-----CCCc--------------------------cCCCCChHHHHHHhC
Q 040660 2 GLQQSKEELLYQQVNYGNVEGIKALCRDGA-----GLEW--------------------------IDKEGKTPLIAACMN 50 (487)
Q Consensus 2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-----~~~~--------------------------~d~~G~TpL~~A~~~ 50 (487)
.+|.-+.+.|+++...|+..+.+++...-. .++. .+....++|+.|+..
T Consensus 61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 478888999999999999776665542211 0000 011134789999999
Q ss_pred CCcHHHHHHHHHcCCCcccc----CCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCHH
Q 040660 51 PGLYDVAKTLIELGAKVDAY----RPGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFTN 123 (487)
Q Consensus 51 ~g~~~~v~~Ll~~ga~~~~~----~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~~ 123 (487)
|+.+.++.|++.|++++.. ..|..|.||||+|+.. |+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus 141 -~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~ 219 (278)
T 1dcq_A 141 -RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAE 219 (278)
T ss_dssp -TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred -cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHH
Confidence 9999999999999995522 2378899999999999 8999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660 124 VVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 124 ~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~ 172 (487)
+|++|+++|++++ .+|..|.|||| +|...++.+++++|+++|++..
T Consensus 220 ~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~ 265 (278)
T 1dcq_A 220 CLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGRF 265 (278)
T ss_dssp HHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCC
Confidence 9999999999999 99999999999 8999999999999999999753
No 106
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=2e-22 Score=166.57 Aligned_cols=107 Identities=35% Similarity=0.471 Sum_probs=63.5
Q ss_pred cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115 (487)
Q Consensus 36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~ 115 (487)
+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus 5 ~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence 455566666666666 5666666666666665555 5556666666666666666666666666666666666666666
Q ss_pred HHHcCCHHHHHHHHhCCCcccccccccCCCCH
Q 040660 116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGF 147 (487)
Q Consensus 116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~ 147 (487)
|+..|+.+++++|+++|++++ .++..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVN--ARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHH--HHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCC--cCCcccccc
Confidence 666666666666666666655 555555554
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=3.2e-22 Score=165.32 Aligned_cols=109 Identities=31% Similarity=0.367 Sum_probs=103.1
Q ss_pred CCCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHH
Q 040660 2 GLQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLH 81 (487)
Q Consensus 2 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh 81 (487)
-.|++|+|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHH
Confidence 4688999999999999999999999999999999999999999999999 9999999999999999998 899999999
Q ss_pred HHHHhCCHHHHHHHHHcCCCcccccCCCCCHH
Q 040660 82 HAAKRGLERTVKLLLSYGANALVLNDDCQTPL 113 (487)
Q Consensus 82 ~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL 113 (487)
+|+..|+.+++++|+++|++++.++..|.||-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence 99999999999999999999999999999873
No 108
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=184.85 Aligned_cols=127 Identities=13% Similarity=0.029 Sum_probs=120.3
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCccc------cCCCCCCCcHHHHHHHh---CCHHHHHHHHHcCCCcccccCCCC
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDA------YRPGRHGGTPLHHAAKR---GLERTVKLLLSYGANALVLNDDCQ 110 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~------~~~d~~g~TpLh~Aa~~---g~~~~v~~Ll~~ga~~~~~d~~g~ 110 (487)
+.++|+.|+.. |+.+.++.|++.|++++. . |..|.||||+|+.. |+.+++++|+++|++++.+|.+|+
T Consensus 151 ~~~~L~~A~~~-g~~~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred hHHHHhhhhhc-cCHHHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34679999999 999999999999999987 4 88999999999997 899999999999999999999999
Q ss_pred CHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCC
Q 040660 111 TPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNP 172 (487)
Q Consensus 111 TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~ 172 (487)
||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+.+|++..
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~~g 286 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGTF 286 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999 99999999999 8999999999999999998754
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.84 E-value=6e-21 Score=198.62 Aligned_cols=135 Identities=13% Similarity=0.057 Sum_probs=119.3
Q ss_pred CChHHHHHHhCCCcHHHHHHHHHcCCCcccc----CCCCCCCcHHHHHHH---hCCHHHHHHHHHcCCCcccccCCCCCH
Q 040660 40 GKTPLIAACMNPGLYDVAKTLIELGAKVDAY----RPGRHGGTPLHHAAK---RGLERTVKLLLSYGANALVLNDDCQTP 112 (487)
Q Consensus 40 G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~----~~d~~g~TpLh~Aa~---~g~~~~v~~Ll~~ga~~~~~d~~g~Tp 112 (487)
..+.||.|+.. |+.++++.||+.|+++|.. +.|..|.||||+|+. .|+.++|++||++|+++|.+|.+|+||
T Consensus 132 ~~~~L~~A~~~-g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHH-TCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred cHHHHHHHHhc-cCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 34789999999 9999999999999999864 237789999999976 999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCCCCCCCCcc
Q 040660 113 LEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSRNPTKPFKL 178 (487)
Q Consensus 113 L~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~ 178 (487)
||+|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+++|++.+..+++.
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~ga~~~~~~~h~ 273 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGTFAFPLHV 273 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCS--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTCC---------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCCCCCccee
Confidence 999999999999999999999999 99999999999 8999999999999999999987766443
No 110
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.84 E-value=2.7e-21 Score=182.14 Aligned_cols=134 Identities=24% Similarity=0.173 Sum_probs=114.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCH
Q 040660 10 LLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLE 89 (487)
Q Consensus 10 ~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~ 89 (487)
++++++..|+.+.+..+...+.+ .+..|.||||+|+.. |+.+++++|++ |++++.+ |..|.||||+|+..|+.
T Consensus 18 ~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~g~~ 90 (244)
T 3ui2_A 18 EYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSD 90 (244)
T ss_dssp EEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHHHHTCH
T ss_pred HHHHHHHcCCCcccccccccccc---cccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHHHCCCH
Confidence 33334444444444333333222 346799999999999 99999999999 9999998 89999999999999999
Q ss_pred HHHHHHHHcCCCccccc-CCCCCHHHHHHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhh
Q 040660 90 RTVKLLLSYGANALVLN-DDCQTPLEVARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAP 153 (487)
Q Consensus 90 ~~v~~Ll~~ga~~~~~d-~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~ 153 (487)
++|++|+++|++++.+| ..|+||||+|+..|+.++|++|+++|++++ .+|..|.|||| +|.
T Consensus 91 ~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~ 152 (244)
T 3ui2_A 91 KCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAR 152 (244)
T ss_dssp HHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHH
T ss_pred HHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHH
Confidence 99999999999999998 889999999999999999999999999999 99999999999 554
No 111
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=5.5e-21 Score=190.28 Aligned_cols=132 Identities=20% Similarity=0.160 Sum_probs=121.3
Q ss_pred cCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHHH
Q 040660 36 IDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLEV 115 (487)
Q Consensus 36 ~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~ 115 (487)
.+..+.|+||+|+...|+++++++||++|++++..+.+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34456789999998768999999999999999998333899999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHHHHhhcCCCC
Q 040660 116 ARAKGFTNVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVWVAVLPTGSR 170 (487)
Q Consensus 116 A~~~g~~~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~~~Ll~~g~~ 170 (487)
|+..|+.++|++|+++|++++ .+|..|.|||| +|...++.+++++|+..+..
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred HHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence 999999999999999999999 99999999999 99999999999999987754
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.84 E-value=5.2e-22 Score=198.35 Aligned_cols=171 Identities=12% Similarity=0.005 Sum_probs=136.7
Q ss_pred hHHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCcccc-CCCCCCCcHHHHHHH
Q 040660 8 EELLYQQVN-YGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAY-RPGRHGGTPLHHAAK 85 (487)
Q Consensus 8 ~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~-~~d~~g~TpLh~Aa~ 85 (487)
.+.|++|.. .++.+++++|+++|.+. .||||+|+.. |+.+++++|++.|+..... ..+..|.||||+|+.
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~ 137 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 137 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHH
Confidence 457788776 57889999999887654 4999999999 9999999999999832111 115568899999999
Q ss_pred hCCHHHHHHHHHcCCC---cccccCCCCCHHHHHHHcCCHHHHHHHHhCCCcccccc--cccCCCCHHHHHhh-hcCCHH
Q 040660 86 RGLERTVKLLLSYGAN---ALVLNDDCQTPLEVARAKGFTNVVRAIENHICIFSGWL--RELYGPGFLELLAP-QLLSRK 159 (487)
Q Consensus 86 ~g~~~~v~~Ll~~ga~---~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~ga~~~~~~--~d~~G~t~L~~~a~-~~~~~~ 159 (487)
.|+.++|++|+++|++ .+..+.+ +||||+|+..|+.++|++|+++|++++ . .|..|.|||| +|+ ..++.+
T Consensus 138 ~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~~e 213 (376)
T 2aja_A 138 NGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGHHN 213 (376)
T ss_dssp TTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCCHH
T ss_pred cCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCCHH
Confidence 9999999999999986 2333333 999999999999999999999999987 6 8889999999 888 999999
Q ss_pred HHHHhhcCCCCCCCCCCccchhccccccccchHHHHHH
Q 040660 160 VWVAVLPTGSRNPTKPFKLELAIYPSLLDARPRMVIAL 197 (487)
Q Consensus 160 ~~~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 197 (487)
++++|++.|+. +..++..+...+....+..|
T Consensus 214 iv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL 244 (376)
T 2aja_A 214 VINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFI 244 (376)
T ss_dssp HHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHH
T ss_pred HHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHH
Confidence 99999998753 45556666555555555444
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=4.9e-19 Score=145.08 Aligned_cols=91 Identities=29% Similarity=0.414 Sum_probs=61.3
Q ss_pred ccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHHHHHhCCHHHHHHHHHcCCCcccccCCCCCHHH
Q 040660 35 WIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHHAAKRGLERTVKLLLSYGANALVLNDDCQTPLE 114 (487)
Q Consensus 35 ~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~ 114 (487)
..|.+|.|+||+|+.. |+.+++++|++.|++++.+ |..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus 19 ~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD 95 (110)
T ss_dssp ---CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred ccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence 3456666777777766 6667777777777666665 666777777777777777777777777777667777777777
Q ss_pred HHHHcCCHHHHHHH
Q 040660 115 VARAKGFTNVVRAI 128 (487)
Q Consensus 115 ~A~~~g~~~~v~~L 128 (487)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 77777777776665
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.78 E-value=4.4e-19 Score=145.35 Aligned_cols=90 Identities=30% Similarity=0.434 Sum_probs=81.1
Q ss_pred CCCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 3 LQQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGKTPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 3 ~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
.|.+|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl~~ 96 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAFDI 96 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHHHH
Confidence 578899999999999999999999999999999999999999999999 9999999999999999987 8899999999
Q ss_pred HHHhCCHHHHHHH
Q 040660 83 AAKRGLERTVKLL 95 (487)
Q Consensus 83 Aa~~g~~~~v~~L 95 (487)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999886
No 115
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.48 E-value=1.2e-14 Score=105.79 Aligned_cols=55 Identities=36% Similarity=0.848 Sum_probs=50.5
Q ss_pred cccccccccccCCceEEc--CCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 432 ATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
+..+|+||++.+.+++++ ||||.++|..|+.+|+.....||+||++|.+++++|.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 63 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYF 63 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEEC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeec
Confidence 446899999999999988 9999966999999999877789999999999999995
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.47 E-value=1.6e-14 Score=104.68 Aligned_cols=55 Identities=27% Similarity=0.782 Sum_probs=49.9
Q ss_pred cccccccccccCCceEEc--CCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 432 ATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
...+|.||++.+.+++++ ||||.++|..|+.+++.....||+||++|..++++|.
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~ 62 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI 62 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence 346899999999999887 9999966999999999777789999999999999996
No 117
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=7.3e-14 Score=102.72 Aligned_cols=53 Identities=26% Similarity=0.743 Sum_probs=47.0
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
.++...|.||++.+.+++++||||..+|..|+..+. .||+||++|..+++||.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence 344578999999999999999999955999999764 59999999999999984
No 118
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.25 E-value=1.5e-12 Score=98.83 Aligned_cols=51 Identities=31% Similarity=0.922 Sum_probs=46.3
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
+...|.||++.+.+++++||||.++|..|+..++ .||+||++|..++++|.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEe
Confidence 3468999999999999999999955999999886 59999999999999985
No 119
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=92.24 Aligned_cols=49 Identities=29% Similarity=0.695 Sum_probs=44.2
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
.+...|.||++.+.+++.++|||.| |..|+.+|......||+||+.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3446899999999999999999999 999999998877899999999863
No 120
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.19 E-value=4.5e-12 Score=95.10 Aligned_cols=52 Identities=31% Similarity=0.782 Sum_probs=46.3
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
.+...|.||++.+.+++++||||..+|..|+.+|. .||+||++|.+++++|.
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 73 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILM 73 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEee
Confidence 34578999999999999999999933999999984 69999999999999984
No 121
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=4.4e-12 Score=95.49 Aligned_cols=50 Identities=32% Similarity=0.852 Sum_probs=45.3
Q ss_pred cccccccccccCCceEEcCCCCc-cchHhhHHHHhccCCccccccccccceeEeee
Q 040660 432 ATSSCVICLDAPVEGACVPCGHM-AGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~-~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
+...|+||++.+.+++++||||. | |..|+.++. .||+||++|...+++|.
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~-C~~C~~~~~----~CP~Cr~~i~~~~~i~~ 74 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVT-CKQCAEAVD----KCPMCYTVITFKQKIFM 74 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCB-CHHHHHHCS----BCTTTCCBCCCCCBCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHH-HHHHhhCCC----CCccCCceecCcEEEec
Confidence 45689999999999999999999 6 999998764 59999999999999984
No 122
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=2.7e-11 Score=92.73 Aligned_cols=51 Identities=24% Similarity=0.457 Sum_probs=45.4
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccce
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
.+....|.||++.+.+++.++|||.| |..|+.+|......||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 12 EEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred CCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCcccccc
Confidence 34557899999999999999999999 9999999988778999999998643
No 123
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.4e-11 Score=91.54 Aligned_cols=54 Identities=24% Similarity=0.747 Sum_probs=47.2
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
.+...|.||++.+.+ +.+||||.| |..|+.+|......||+||+.+.....+|.
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~ 66 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESSG 66 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence 445789999999999 889999999 999999998878899999999987766653
No 124
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.4e-11 Score=89.87 Aligned_cols=51 Identities=24% Similarity=0.482 Sum_probs=45.2
Q ss_pred CCcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccccce
Q 040660 430 KDATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQV 481 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 481 (487)
.++...|.||++.+.+++.+ +|||.| |..|+.+|......||+||+.+...
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 12 LTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred cCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 45567999999999999887 999999 9999999987777899999998754
No 125
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.12 E-value=1.3e-11 Score=91.91 Aligned_cols=54 Identities=35% Similarity=0.775 Sum_probs=46.7
Q ss_pred CcccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660 431 DATSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y 485 (487)
++...|.||++...++ +.++|||.| |..|+.+|......||+||+.+. .++++|
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 3446899999988776 889999999 99999999888889999999997 566776
No 126
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.7e-11 Score=89.64 Aligned_cols=49 Identities=37% Similarity=0.808 Sum_probs=43.0
Q ss_pred CcccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
.+...|.||++.+.++ +.++|||.| |..|+..|......||+||+.|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 4457899999988776 889999999 999999998877899999998864
No 127
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=1e-10 Score=87.49 Aligned_cols=50 Identities=26% Similarity=0.789 Sum_probs=43.4
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhc---cCCccccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA---KKWGCPVCRANISQ 480 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~~ 480 (487)
..+...|.||++.+.+++.++|||.| |..|+..|.. ....||+||+.+..
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 34557999999999999999999999 9999999986 34589999999863
No 128
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.09 E-value=3e-11 Score=87.94 Aligned_cols=52 Identities=35% Similarity=0.777 Sum_probs=45.9
Q ss_pred cccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEeee
Q 040660 434 SSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLYA 486 (487)
Q Consensus 434 ~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y~ 486 (487)
..|.||++...++ +.++|||.| |..|+.+|...+..||+||+.+. .++++|.
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 5899999988765 788999999 99999999888889999999997 6788773
No 129
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.08 E-value=7.5e-11 Score=88.48 Aligned_cols=50 Identities=26% Similarity=0.662 Sum_probs=43.6
Q ss_pred CCCcccccccccccCCceEEcC-CCCccchHhhHHHHhccC--Ccccccccccc
Q 040660 429 DKDATSSCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKK--WGCPVCRANIS 479 (487)
Q Consensus 429 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 479 (487)
+..+...|.||++.+.+++.++ |||.| |..|+.+|.... ..||+||+.+.
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 11 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp CSCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred cCCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 3455689999999999999999 99999 999999998754 58999999764
No 130
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.07 E-value=4.5e-11 Score=88.16 Aligned_cols=52 Identities=27% Similarity=0.733 Sum_probs=45.7
Q ss_pred ccccccccccCCce-EEcCCCCccchHhhHHHHhccCCccccccccccceeEee
Q 040660 433 TSSCVICLDAPVEG-ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y 485 (487)
...|.||++...++ +.++|||.| |..|+.+|...+..||+||+.+..+++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 35899999999885 789999999 99999999887789999999998776554
No 131
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=1e-10 Score=85.60 Aligned_cols=49 Identities=22% Similarity=0.529 Sum_probs=43.1
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 480 (487)
.+...|.||++...+++.++|||.| |..|+.+|.. ....||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4457999999999999999999999 9999999984 45589999999864
No 132
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.05 E-value=6e-11 Score=100.66 Aligned_cols=49 Identities=33% Similarity=0.787 Sum_probs=44.6
Q ss_pred ccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660 433 TSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI 482 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~ 482 (487)
...|+||++.+.+++.+||||.| |..|+..|...+..||+||++|....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 45799999999999999999999 99999999988889999999997543
No 133
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=8.7e-11 Score=88.42 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=41.8
Q ss_pred CcccccccccccCCce---EEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
.+...|.||++.+... +.+||||.| |..|+.+|...+..||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 3456899999877655 778999999 999999998888899999998864
No 134
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=1.5e-10 Score=85.57 Aligned_cols=51 Identities=27% Similarity=0.675 Sum_probs=43.1
Q ss_pred CcccccccccccC---CceEEcCCCCccchHhhHHHHhccCCcccccccccccee
Q 040660 431 DATSSCVICLDAP---VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVI 482 (487)
Q Consensus 431 ~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~ 482 (487)
+....|.||++.. ..++.++|||.| |..|+..|......||+||..|...+
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 65 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQL 65 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcC
Confidence 4456899998866 456789999999 99999999888889999999987644
No 135
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.03 E-value=2.6e-10 Score=88.07 Aligned_cols=49 Identities=31% Similarity=0.661 Sum_probs=43.5
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc------CCcccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK------KWGCPVCRANIS 479 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~ 479 (487)
..+...|.||++.+.+++.++|||.| |..|+..|... ...||+||+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 16 IKEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CCTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred CccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 34457899999999999999999999 99999998776 568999999986
No 136
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.03 E-value=1.3e-10 Score=88.28 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=41.6
Q ss_pred CCcccccccccccCCc---eEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 430 KDATSSCVICLDAPVE---GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..+...|.||++.+.. ...++|||.| |..|+.+|......||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 3445789999887643 3567999999 999999999888899999999874
No 137
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=87.39 Aligned_cols=54 Identities=24% Similarity=0.522 Sum_probs=43.7
Q ss_pred CCcccccccccccCCce---EEcCCCCccchHhhHHHHhccCCccccccccccceeEe
Q 040660 430 KDATSSCVICLDAPVEG---ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRL 484 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~ 484 (487)
.+....|.||++.+... +.++|||.| |..|+.+|......||+||++|..+.++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence 34456899999987543 445999999 9999999998888999999999876543
No 138
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=2.9e-10 Score=88.46 Aligned_cols=49 Identities=29% Similarity=0.680 Sum_probs=42.7
Q ss_pred CCcccccccccccCCc----eEEcCCCCccchHhhHHHHhccC---Ccccccccccc
Q 040660 430 KDATSSCVICLDAPVE----GACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS 479 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~ 479 (487)
..+...|.||++.+.+ ++.++|||.| |..|+.+|.... ..||+||+.+.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3455789999999988 9999999999 999999998764 68999999875
No 139
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.99 E-value=1.8e-10 Score=81.01 Aligned_cols=46 Identities=33% Similarity=0.832 Sum_probs=40.7
Q ss_pred ccccccccccCCc----eEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 433 TSSCVICLDAPVE----GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
...|.||++...+ ++.++|||.| |..|+.+|......||+||+.|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 3589999998755 7889999999 99999999887789999999875
No 140
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=2.2e-10 Score=88.38 Aligned_cols=49 Identities=33% Similarity=0.772 Sum_probs=43.3
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc------CCcccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK------KWGCPVCRANIS 479 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~ 479 (487)
..+...|.||++.+.+++.++|||.| |..|+..|... ...||+||+.+.
T Consensus 16 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 16 VKEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred ccCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 34457899999999999999999999 99999998765 568999999987
No 141
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.98 E-value=2.3e-10 Score=80.41 Aligned_cols=47 Identities=26% Similarity=0.676 Sum_probs=40.8
Q ss_pred cccccccccccCCc---eEEcC-CCCccchHhhHHHHhccCCcccccccccc
Q 040660 432 ATSSCVICLDAPVE---GACVP-CGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
+..+|.||++...+ ++.++ |||.| |..|+.+|...+..||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 34689999998877 67777 99999 99999999988889999998763
No 142
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.97 E-value=1.3e-10 Score=88.50 Aligned_cols=49 Identities=33% Similarity=0.754 Sum_probs=43.1
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhcc-------CCcccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-------KWGCPVCRANIS 479 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP~Cr~~i~ 479 (487)
..+...|.||++.+.+++.++|||.| |..|+.+|... ...||+||+.+.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34557899999999999999999999 99999998775 458999999985
No 143
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.97 E-value=3.4e-10 Score=85.86 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=43.6
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
.+...|+||++...+++.++|||.| |..|+.+|... ...||+||+++.
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCC
Confidence 4457899999999999999999999 99999999876 668999999986
No 144
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.96 E-value=3.2e-10 Score=88.70 Aligned_cols=49 Identities=29% Similarity=0.585 Sum_probs=42.6
Q ss_pred CcccccccccccCCc---eEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVE---GACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
++...|.||++.+.. ++.+||||.| |..|+..|...+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 344689999988776 7778999999 999999999888899999998864
No 145
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=8e-10 Score=79.99 Aligned_cols=44 Identities=30% Similarity=0.832 Sum_probs=38.6
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhc---cCCccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA---KKWGCPVC 474 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~C 474 (487)
..+...|.||++.+.+++.++|||.| |..|+.+|.. ....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 34557899999999999999999999 9999999987 34579998
No 146
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.95 E-value=3.4e-10 Score=85.27 Aligned_cols=54 Identities=22% Similarity=0.635 Sum_probs=41.9
Q ss_pred CcccccccccccC--CceEEcC--CCCccchHhhHHHHhcc-CCccccccccccceeEee
Q 040660 431 DATSSCVICLDAP--VEGACVP--CGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRLY 485 (487)
Q Consensus 431 ~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~y 485 (487)
++...|+||++.. .+.+++| |||.| |..|+.+++.. ...||+||+++.....+|
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred ccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 4457899999976 3456666 99999 99999998754 458999999997644333
No 147
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.94 E-value=4.9e-10 Score=87.91 Aligned_cols=49 Identities=27% Similarity=0.680 Sum_probs=42.6
Q ss_pred CCcccccccccccCCceEEcC-CCCccchHhhHHHHhccC--Ccccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKK--WGCPVCRANIS 479 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 479 (487)
..+...|+||++.+.+++.++ |||.| |..|+..|.... ..||+||+.+.
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 445679999999999999999 99999 999999997543 48999999973
No 148
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.91 E-value=4.1e-10 Score=89.71 Aligned_cols=48 Identities=25% Similarity=0.699 Sum_probs=43.5
Q ss_pred CcccccccccccCCceEE-cCCCCccchHhhHHHHhccC-Ccccccccccc
Q 040660 431 DATSSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVKAKK-WGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~ 479 (487)
.+...|.||++.+.+++. ++|||.| |..|+.+|.... ..||+||.++.
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 20 AEVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence 345789999999999999 9999999 999999998876 58999999985
No 149
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.90 E-value=1e-09 Score=77.96 Aligned_cols=44 Identities=32% Similarity=0.836 Sum_probs=37.9
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhc---cCCccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA---KKWGCPVC 474 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~C 474 (487)
..+...|.||++...+++.++|||.| |..|+.+|.. ....||+|
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 12 LQVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp SCCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred cccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 34457899999999999999999999 9999999943 45589998
No 150
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.89 E-value=6.9e-10 Score=80.88 Aligned_cols=46 Identities=24% Similarity=0.583 Sum_probs=37.9
Q ss_pred ccccccccc-cCCce----EEcCCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660 433 TSSCVICLD-APVEG----ACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
+..|+||++ ...++ +.++|||.| |..|+.+|..+ ...||+||+++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCccc
Confidence 358999999 55555 568999999 99999999554 457999999996
No 151
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.87 E-value=2.1e-10 Score=80.77 Aligned_cols=45 Identities=27% Similarity=0.589 Sum_probs=39.0
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
.+...|.||++.+.+++.+||||.| |..|+..+ ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence 4457899999999999999999999 99998774 337999999886
No 152
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.86 E-value=8.9e-10 Score=87.68 Aligned_cols=49 Identities=24% Similarity=0.601 Sum_probs=44.1
Q ss_pred CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
.+...|.||++...+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus 20 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 20 DDLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 3457899999999999988 999999 999999999887899999999873
No 153
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.86 E-value=9.2e-10 Score=91.51 Aligned_cols=48 Identities=25% Similarity=0.667 Sum_probs=42.6
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 480 (487)
+...|+||++.+.+++.++|||.| |..|+..|..... .||+||+.+..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 446899999999999999999999 9999999987543 89999999965
No 154
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.84 E-value=1.5e-09 Score=87.89 Aligned_cols=49 Identities=20% Similarity=0.600 Sum_probs=44.4
Q ss_pred CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
.+...|.||++.+.+++.+ +|||.| |..|+..|......||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 4457899999999999997 999999 999999999887899999999874
No 155
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.84 E-value=2.5e-09 Score=82.18 Aligned_cols=48 Identities=10% Similarity=-0.025 Sum_probs=44.2
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
.+...|+||++...++|.++|||.| |..|+..|+.....||+||+++.
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLT 59 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCC
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCC
Confidence 4558999999999999999999999 99999999987779999999886
No 156
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.81 E-value=5.4e-09 Score=82.50 Aligned_cols=48 Identities=10% Similarity=-0.028 Sum_probs=44.3
Q ss_pred CcccccccccccCCceEEcCCC-CccchHhhHHHHhccCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCG-HMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
.+...|+||++...++|.++|| |.| |..|+.+|+.....||+||+++.
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~ 68 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLT 68 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCC
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCC
Confidence 4568999999999999999999 999 99999999987778999999986
No 157
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.81 E-value=9.7e-10 Score=90.09 Aligned_cols=49 Identities=33% Similarity=0.805 Sum_probs=43.3
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 480 (487)
.+...|.||++...+++.++|||.| |..|+.+|... ...||+||+.+..
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 4457899999999999999999999 99999999866 5589999998863
No 158
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.80 E-value=2e-09 Score=105.07 Aligned_cols=50 Identities=34% Similarity=0.822 Sum_probs=45.2
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhc-cCCccccccccccceeEe
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRANISQVIRL 484 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~~~~~ 484 (487)
..|+||++...+++.+||||.| |..|+..|.. ....||+||+++.....+
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 6899999999999999999999 9999999987 567899999999876554
No 159
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=1.9e-09 Score=92.44 Aligned_cols=48 Identities=27% Similarity=0.645 Sum_probs=43.0
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 480 (487)
+...|.||++.+.+++.++|||.| |..|+..|..... .||+||..+..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence 446899999999999999999999 9999999987644 79999999874
No 160
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.79 E-value=1e-08 Score=81.17 Aligned_cols=48 Identities=10% Similarity=0.000 Sum_probs=44.4
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
.+...|+||++...++|.++|||.| |..|+.+|+.....||+||.++.
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~ 74 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLT 74 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCC
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCC
Confidence 4568999999999999999999999 99999999987779999999986
No 161
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.77 E-value=1.4e-09 Score=105.82 Aligned_cols=51 Identities=31% Similarity=0.911 Sum_probs=45.6
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccCCccccccccccceeEeee
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQVIRLYA 486 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~~y~ 486 (487)
+...|+||++.+.+++++||||.++|..|+..+. .||+||.+|..++++|.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~ 344 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFL 344 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC-
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeec
Confidence 4478999999999999999999944999999884 59999999999999984
No 162
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.77 E-value=4e-09 Score=86.73 Aligned_cols=50 Identities=30% Similarity=0.589 Sum_probs=44.0
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQ 480 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 480 (487)
..+...|+||++...+++.++|||.| |..|+..|..... .||+||.++..
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 34557999999999999999999999 9999999987644 89999999874
No 163
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.74 E-value=3.1e-09 Score=93.00 Aligned_cols=48 Identities=27% Similarity=0.615 Sum_probs=43.0
Q ss_pred CcccccccccccCCceEEc-CCCCccchHhhHHHHhcc-CCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
.+...|+||++.+.+++.+ +|||.| |..|+..|... ...||+||..+.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence 4457999999999999987 999999 99999999886 668999999985
No 164
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.74 E-value=4.4e-09 Score=86.01 Aligned_cols=46 Identities=22% Similarity=0.624 Sum_probs=38.2
Q ss_pred cccccccccCCceE------------------EcCCCCccchHhhHHHHh-----ccCCccccccccccc
Q 040660 434 SSCVICLDAPVEGA------------------CVPCGHMAGCMSCLNEVK-----AKKWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~~~~~------------------~~pCgH~~~C~~C~~~~~-----~~~~~CP~Cr~~i~~ 480 (487)
..|.||++.+..+. +++|||.| |..|+..|. .....||+||+.+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 58999999875533 78999999 999999998 345589999998853
No 165
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=2.4e-09 Score=87.32 Aligned_cols=47 Identities=30% Similarity=0.745 Sum_probs=41.8
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccC---Ccccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK---WGCPVCRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~ 479 (487)
+...|.||++.+.+++.++|||.| |..|+..|.... ..||+||..+.
T Consensus 20 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 20 KILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HHTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 346899999999999999999999 999999998754 37999999886
No 166
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.69 E-value=5e-09 Score=88.71 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=42.5
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccCC-ccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANI 478 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i 478 (487)
.++...|+||++.+.+++.++|||.| |..|+.+|..... .||+||.++
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CCcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 34567999999999999999999999 9999999987554 899999975
No 167
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=8.1e-09 Score=78.64 Aligned_cols=45 Identities=20% Similarity=0.514 Sum_probs=37.6
Q ss_pred cccccccccCCc--------------eEEc-CCCCccchHhhHHHHhccCCcccccccccc
Q 040660 434 SSCVICLDAPVE--------------GACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
..|.||++...+ .+.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus 16 ~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 16 DTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp SCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence 468888887755 3444 599999 99999999988889999999875
No 168
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.68 E-value=6.9e-09 Score=87.23 Aligned_cols=52 Identities=37% Similarity=0.798 Sum_probs=45.1
Q ss_pred ccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660 433 TSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 433 ~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y 485 (487)
...|.||++...++ +.++|||.| |..|+.+|...+..||+||+.+. .+.++|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 7 TVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred CCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence 46899999998887 889999999 99999999988889999999997 344444
No 169
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.68 E-value=6.8e-09 Score=85.13 Aligned_cols=48 Identities=25% Similarity=0.496 Sum_probs=43.3
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhcc-CCccccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 480 (487)
+...|+||++.+.+++.++|||.| |..|+.+|... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 457899999999999999999999 99999999876 5689999999863
No 170
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.64 E-value=9.4e-09 Score=86.40 Aligned_cols=53 Identities=36% Similarity=0.786 Sum_probs=46.5
Q ss_pred cccccccccccCCce-------EEcCCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660 432 ATSSCVICLDAPVEG-------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y 485 (487)
+...|.||++...++ +.++|||.| |..|+.+|......||+||..+. +++++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 346899999988765 888999999 99999999988889999999996 578887
No 171
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.56 E-value=9.9e-09 Score=84.23 Aligned_cols=46 Identities=28% Similarity=0.739 Sum_probs=41.3
Q ss_pred CcccccccccccCCceEEc-CCCCccchHhhHHHHhccCCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
.+...|+||++.+.+++.+ +|||.| |..|+..|.. ..||+||..+.
T Consensus 20 ~~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 20 EKLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HHTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred hhCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence 3457899999999999999 999999 9999999976 57999999985
No 172
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.51 E-value=5.8e-08 Score=77.55 Aligned_cols=46 Identities=20% Similarity=0.438 Sum_probs=38.8
Q ss_pred ccccccccccCCce------------------EEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 433 TSSCVICLDAPVEG------------------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
...|.||++.+... +.++|+|.| +..|+..|...+..||+||+.+.
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 35799999876543 557999999 99999999988889999999864
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.46 E-value=7.2e-08 Score=91.94 Aligned_cols=47 Identities=17% Similarity=0.078 Sum_probs=42.1
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHHHhccCC-cccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~ 479 (487)
....|+||++...++|.+||||.| |..|+.+|+.... .||+||.++.
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCc
Confidence 347899999999999999999999 9999999987644 4999999986
No 174
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.43 E-value=8.5e-08 Score=84.22 Aligned_cols=50 Identities=30% Similarity=0.610 Sum_probs=43.9
Q ss_pred CCcccccccccccCCceEEcCCCCccchHhhHHHHhccC-Cccccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANISQ 480 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~ 480 (487)
.++...|+||++.+.+++.++|||.| |..|+.+|.... ..||+||..+..
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 45568999999999999999999999 999999997653 489999999864
No 175
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=7.9e-08 Score=75.35 Aligned_cols=45 Identities=18% Similarity=0.328 Sum_probs=39.3
Q ss_pred cccccccccccCCceEEcC-CCCccchHhhHHHHhccC------Ccccc--cccc
Q 040660 432 ATSSCVICLDAPVEGACVP-CGHMAGCMSCLNEVKAKK------WGCPV--CRAN 477 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~CP~--Cr~~ 477 (487)
+...|+||++.+.++|.++ |||.| |..|+..|+... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4478999999999999996 99999 999999998653 48999 9855
No 176
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.42 E-value=1.3e-07 Score=82.61 Aligned_cols=49 Identities=18% Similarity=0.101 Sum_probs=43.2
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHhccC-Cccccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVKAKK-WGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~ 480 (487)
.+...|+||++...++|.+||||.| |..|+..|+... ..||+||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 4558999999999999999999999 999999998763 369999998863
No 177
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.27 E-value=1.1e-07 Score=76.88 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=0.0
Q ss_pred cccccccccCCce------------------EEcCCCCccchHhhHHHHhccCCcccccccccc
Q 040660 434 SSCVICLDAPVEG------------------ACVPCGHMAGCMSCLNEVKAKKWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 479 (487)
..|.||++.+.+. +.++|+|.| |..|+.+|...+..||+||+++.
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 5899999887542 235999999 99999999988889999999853
No 178
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=8.1e-07 Score=66.95 Aligned_cols=48 Identities=21% Similarity=0.487 Sum_probs=38.8
Q ss_pred cccccccccccC--CceEEcCCC-----CccchHhhHHHHhccC--Cccccccccccc
Q 040660 432 ATSSCVICLDAP--VEGACVPCG-----HMAGCMSCLNEVKAKK--WGCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr~~i~~ 480 (487)
+...|.||++.. .+.+++||. |.| ...|+.+|...+ ..||+||..+.-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 346899999755 456678996 999 999999998764 489999998863
No 179
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.12 E-value=1.1e-06 Score=62.52 Aligned_cols=51 Identities=14% Similarity=0.178 Sum_probs=45.0
Q ss_pred cccccccccCCceEEc-CCCCccchHhhHHHHhccCCcccccccccc--ceeEee
Q 040660 434 SSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKKWGCPVCRANIS--QVIRLY 485 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~~~~y 485 (487)
..|+||++...++|.. +|||.| |..|+.+|......||++++++. .+++++
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 5899999999999999 999999 99999999877678999999985 455554
No 180
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.4e-06 Score=79.80 Aligned_cols=47 Identities=17% Similarity=0.281 Sum_probs=41.1
Q ss_pred cccccccccccCCceEEc-CCCCccchHhhHHHHhccC--Ccccc--cccccc
Q 040660 432 ATSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKK--WGCPV--CRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~CP~--Cr~~i~ 479 (487)
....|+||++.+.++|.. .|||.| |..|+.+++... ..||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 347899999999999974 999999 999999998753 47999 999875
No 181
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.95 E-value=2.8e-06 Score=66.42 Aligned_cols=44 Identities=25% Similarity=0.606 Sum_probs=34.9
Q ss_pred ccccccccccCCceEEc---CCCCccchHhhHHHHhcc--------CCcccc--cccc
Q 040660 433 TSSCVICLDAPVEGACV---PCGHMAGCMSCLNEVKAK--------KWGCPV--CRAN 477 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~---pCgH~~~C~~C~~~~~~~--------~~~CP~--Cr~~ 477 (487)
...|.||++.......+ +|||.| |..|+...+.. ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 46899999987665443 799999 99999887542 237999 9988
No 182
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.69 E-value=5.8e-05 Score=55.48 Aligned_cols=49 Identities=27% Similarity=0.634 Sum_probs=39.7
Q ss_pred CcccccccccccCCceE-EcCCCCccchHhhHHHHhccC--Cccccccccccc
Q 040660 431 DATSSCVICLDAPVEGA-CVPCGHMAGCMSCLNEVKAKK--WGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~~ 480 (487)
+...+|.||++...... +..|+|.| -..|+.+|.+.+ ..||+||.....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 44478999999876444 34899999 999999998776 689999998753
No 183
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.66 E-value=4.1e-05 Score=58.58 Aligned_cols=49 Identities=24% Similarity=0.514 Sum_probs=35.9
Q ss_pred ccccccccCCc-eEEcCCCCccchHhhHHHHhcc-CCccccccccccceeEe
Q 040660 435 SCVICLDAPVE-GACVPCGHMAGCMSCLNEVKAK-KWGCPVCRANISQVIRL 484 (487)
Q Consensus 435 ~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~~~~ 484 (487)
-|.+|--.... ...+||.|.| |+.|+..+..+ .+.||.|+.+|..+-++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 46677433222 2357999999 99999998644 56899999999877553
No 184
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.37 E-value=9.5e-05 Score=52.10 Aligned_cols=48 Identities=21% Similarity=0.432 Sum_probs=37.4
Q ss_pred CcccccccccccCCceEEcCCCC-----ccchHhhHHHHhcc--CCcccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGH-----MAGCMSCLNEVKAK--KWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH-----~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 479 (487)
++...|.||++...+..+.||.+ .| -..|+.+|... +..||+|+..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~-H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENV-HRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSC-CHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhh-HHHHHHHHHHhCCCCccCCCCCeee
Confidence 34468999998776666789764 45 99999999764 458999998764
No 185
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=97.21 E-value=7.4e-05 Score=70.73 Aligned_cols=49 Identities=27% Similarity=0.594 Sum_probs=37.6
Q ss_pred CcccccccccccCCc------eEE--cCCCCccchHhhHHHHhccC-----------Cccccccccccc
Q 040660 431 DATSSCVICLDAPVE------GAC--VPCGHMAGCMSCLNEVKAKK-----------WGCPVCRANISQ 480 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~ 480 (487)
+...+|.||++...+ .++ .+|||.| ...|+.+|.+.. +.||+||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 445789999986654 122 3799999 999999997641 469999999863
No 186
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=96.53 E-value=0.00098 Score=49.92 Aligned_cols=48 Identities=25% Similarity=0.627 Sum_probs=39.5
Q ss_pred ccccccccccCCceEEcCCC-CccchHhhHHHHhccCCccccccccccceeE
Q 040660 433 TSSCVICLDAPVEGACVPCG-HMAGCMSCLNEVKAKKWGCPVCRANISQVIR 483 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~~~~~ 483 (487)
..-|..||-....- +.|. |.+ |..|+..|.+.+..||+|..++-..++
T Consensus 28 ~~nCKsCWf~~k~L--V~C~dHYL-Cl~CLtlmL~~SdrCpIC~~pLPtkl~ 76 (99)
T 2ko5_A 28 PQFCKSCWFENKGL--VECNNHYL-CLNCLTLLLSVSNRCPICKMPLPTKLR 76 (99)
T ss_dssp CCCCCSSCSCCSSE--EECSSCEE-EHHHHHHTCSSSSEETTTTEECCCCSC
T ss_pred cccChhhccccCCe--eeecchhh-HHHHHHHHHhhccCCcccCCcCCccee
Confidence 36899999887754 4577 666 999999999998899999998876554
No 187
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=93.62 E-value=0.043 Score=39.64 Aligned_cols=32 Identities=28% Similarity=0.627 Sum_probs=27.9
Q ss_pred ccccccccccCCceEEcCCC----CccchHhhHHHHh
Q 040660 433 TSSCVICLDAPVEGACVPCG----HMAGCMSCLNEVK 465 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~ 465 (487)
...|.+|.++..+.-|+.|- |.| |+.|.+...
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sI 50 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI 50 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred eeEeecchhhhccCceeeCCCccCCee-eccccHHHH
Confidence 36899999999999999885 999 999988753
No 188
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.43 E-value=0.099 Score=47.70 Aligned_cols=46 Identities=22% Similarity=0.546 Sum_probs=36.6
Q ss_pred ccccccccccCCceEEc-CCCCccchHhhHHHHhccC--Ccccccccccc
Q 040660 433 TSSCVICLDAPVEGACV-PCGHMAGCMSCLNEVKAKK--WGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 479 (487)
...|.||.+.......- .|+|.| ...|+.++.+.. ..||.|+....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 36899999977655543 499999 999999997653 48999998765
No 189
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=91.59 E-value=0.074 Score=41.41 Aligned_cols=30 Identities=23% Similarity=0.544 Sum_probs=24.7
Q ss_pred ccccccccc-CCceEE--cCCCCccchHhhHHHH
Q 040660 434 SSCVICLDA-PVEGAC--VPCGHMAGCMSCLNEV 464 (487)
Q Consensus 434 ~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~ 464 (487)
..|.||.+. +..++. +.|+|.| |..|+..+
T Consensus 4 ~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~ 36 (101)
T 2jun_A 4 VLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT 36 (101)
T ss_dssp CBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred CCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence 579999974 455555 8999999 99999983
No 190
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=70.89 E-value=0.71 Score=43.64 Aligned_cols=44 Identities=23% Similarity=0.494 Sum_probs=34.3
Q ss_pred cccccccccCCceEEc----CCCCcc-chHhhHHHHhccCCcccccccc
Q 040660 434 SSCVICLDAPVEGACV----PCGHMA-GCMSCLNEVKAKKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~----pCgH~~-~C~~C~~~~~~~~~~CP~Cr~~ 477 (487)
..|+||-..+.-.++. .=|+++ .|..|...|.....+||.|...
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 5899999988777654 245422 3999999998888899999875
No 191
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=69.70 E-value=3.8 Score=33.12 Aligned_cols=47 Identities=19% Similarity=0.559 Sum_probs=32.8
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHH-----------hccCCccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEV-----------KAKKWGCPVCRANI 478 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----------~~~~~~CP~Cr~~i 478 (487)
.....|.||.+.-.-.-.-.|-..| |..|+.+. ....+.|+.|+..-
T Consensus 55 g~~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~p 112 (129)
T 3ql9_A 55 GMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPEP 112 (129)
T ss_dssp SCBSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGG
T ss_pred CCCCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCHH
Confidence 3445799999875444445777888 99999864 12357899997643
No 192
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=64.88 E-value=5.6 Score=43.20 Aligned_cols=50 Identities=8% Similarity=-0.059 Sum_probs=44.2
Q ss_pred CCcccccccccccCCceEEcCCCC-ccchHhhHHHHhccCCccccccccccc
Q 040660 430 KDATSSCVICLDAPVEGACVPCGH-MAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~~pCgH-~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..+...|+|-++...++|.+|.|| .+ =..++.+|......||+-|+++..
T Consensus 888 iP~~F~cPIs~~lM~DPVilpsG~~Ty-dR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 888 VPDEFLDPLMYTIMKDPVILPASKMNI-DRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp SCGGGBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CcHHhCCcchhhHHhCCeEcCCCCEEE-CHHHHHHHHhcCCCCCCCCCCCCc
Confidence 456789999999999999999985 56 999999999887899999999863
No 193
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=64.51 E-value=4.8 Score=28.30 Aligned_cols=43 Identities=19% Similarity=0.446 Sum_probs=30.5
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHHHhc----cCCcccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNEVKA----KKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~ 477 (487)
..|.||.+.-.-...--|...| ...|+..-.. ..+.|+.|...
T Consensus 13 ~~C~vC~~~~~ll~Cd~C~~~~-H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDGTDVLRCTHCAAAF-HWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCCTTCEECSSSCCEE-CHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCCCeEEECCCCCCce-ecccCCCccCcCCCCCEECccccCC
Confidence 5799999876544445788777 9999864332 35689999764
No 194
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=62.67 E-value=3.6 Score=39.57 Aligned_cols=45 Identities=27% Similarity=0.683 Sum_probs=33.3
Q ss_pred cccccccccCCceE-EcCCCCccchHhhHHHHh----ccCCcccccccccc
Q 040660 434 SSCVICLDAPVEGA-CVPCGHMAGCMSCLNEVK----AKKWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~----~~~~~CP~Cr~~i~ 479 (487)
..|++-+.+...++ ...|.|.- |++-..-+. ...+.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCcccC
Confidence 68999888887777 46899997 776643332 23678999998774
No 195
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=59.31 E-value=8 Score=31.78 Aligned_cols=46 Identities=20% Similarity=0.566 Sum_probs=34.3
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHh-----------ccCCcccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVK-----------AKKWGCPVCRAN 477 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CP~Cr~~ 477 (487)
.....|.||.+.-.-...-.|--.| |..|+.... ...+.||.|+..
T Consensus 61 g~~d~C~vC~~GG~LlcCD~Cpr~F-h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 61 GMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp SCBCSCSSSCCCSSEEECSSSCCEE-EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred CCCCeecccCCCCcEEeCCCCCCee-eHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 3456899999877655556888888 999998532 236689999853
No 196
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=58.23 E-value=4.7 Score=38.60 Aligned_cols=45 Identities=22% Similarity=0.513 Sum_probs=33.9
Q ss_pred cccccccccCCceEE-cCCCCccchHhhHHHHh----ccCCcccccccccc
Q 040660 434 SSCVICLDAPVEGAC-VPCGHMAGCMSCLNEVK----AKKWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~----~~~~~CP~Cr~~i~ 479 (487)
..|++-+.+...++- ..|.|.- |+.-..-+. ...+.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 579998888877774 6899997 776654442 23678999999875
No 197
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=58.02 E-value=8.1 Score=28.62 Aligned_cols=45 Identities=29% Similarity=0.654 Sum_probs=31.3
Q ss_pred cccccccccC----CceEEcC---CCCccchHhhHHHHhcc-CCcccccccccc
Q 040660 434 SSCVICLDAP----VEGACVP---CGHMAGCMSCLNEVKAK-KWGCPVCRANIS 479 (487)
Q Consensus 434 ~~C~iC~~~~----~~~~~~p---CgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 479 (487)
..|.||-|.. .--+|+- |+--+ |..|.+--... +..||.|.....
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChh-hHHHHHHHHhccCccccccCCccc
Confidence 5899999863 1113444 45444 99999886654 558999998775
No 198
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=56.90 E-value=1 Score=36.88 Aligned_cols=43 Identities=23% Similarity=0.706 Sum_probs=31.7
Q ss_pred cccccccccC-----CceEEcCCCCccchHhhHHHHhc----cCCcccccccc
Q 040660 434 SSCVICLDAP-----VEGACVPCGHMAGCMSCLNEVKA----KKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~ 477 (487)
..|.+|...+ ...++.-|.|.+ |..|...... ..+.|-+|++.
T Consensus 56 ~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 56 NRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred ccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 5799999876 334567899999 9999776532 24579999764
No 199
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=55.30 E-value=15 Score=26.86 Aligned_cols=42 Identities=24% Similarity=0.636 Sum_probs=28.0
Q ss_pred cccccccccccCCceEEcCCC---CccchHhhHHHHh----------------ccCCcccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCG---HMAGCMSCLNEVK----------------AKKWGCPVCR 475 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCg---H~~~C~~C~~~~~----------------~~~~~CP~Cr 475 (487)
.+..|.||-.-.... ++||+ -.| -..|++++- ...+.|+.|.
T Consensus 14 ~D~~C~VC~~~t~~~-l~pCRvC~Rvf-H~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 14 NDEMCDVCEVWTAES-LFPCRVCTRVF-HDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CSCCCTTTCCCCSSC-CSSCSSSSSCC-CHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCcccCccccccccc-eeccccccccc-cHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 446899997444333 45554 566 899999971 1245799994
No 200
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=54.30 E-value=2.5 Score=28.59 Aligned_cols=45 Identities=22% Similarity=0.662 Sum_probs=27.2
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHH----HhccCCccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNE----VKAKKWGCPVCRA 476 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~~~~~~~CP~Cr~ 476 (487)
.....|.||.+.-.-...--|...| ...|+.. +-...+.||.|+.
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~~-H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCSSCCEECSSSSCEE-CSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCCCeEEEcCCCCcce-ECccCCCCcCCCCCCceEChhhhC
Confidence 3446899999864433334666555 6667653 2223557999864
No 201
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=51.32 E-value=2 Score=35.95 Aligned_cols=44 Identities=25% Similarity=0.733 Sum_probs=31.7
Q ss_pred ccccccccccC-----CceEEcCCCCccchHhhHHHHhc-cCCcccccccc
Q 040660 433 TSSCVICLDAP-----VEGACVPCGHMAGCMSCLNEVKA-KKWGCPVCRAN 477 (487)
Q Consensus 433 ~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~ 477 (487)
...|.+|...+ .-.++.-|.|.+ |..|...... ..+.|-+|++.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 46899999863 455667899999 9999843322 24579999764
No 202
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=50.47 E-value=9.1 Score=26.60 Aligned_cols=33 Identities=27% Similarity=0.733 Sum_probs=25.3
Q ss_pred CcccccccccccCCceEEcCC-CCccchHhhHHHHh
Q 040660 431 DATSSCVICLDAPVEGACVPC-GHMAGCMSCLNEVK 465 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~~ 465 (487)
++..-|+||.+- ...-++-| |-.| |..|-..+-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~H 39 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLY-CARCFREGH 39 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHHT
T ss_pred cCCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHHc
Confidence 344689999987 55667899 6666 999988875
No 203
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=49.26 E-value=4.5 Score=27.91 Aligned_cols=47 Identities=26% Similarity=0.620 Sum_probs=28.1
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHH----HhccCCccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNE----VKAKKWGCPVCRANI 478 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~~~~~~~CP~Cr~~i 478 (487)
.....|.||.+.-.-...-.|...| ...|+.. +-...+.||.|+...
T Consensus 7 ~~~~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 7 HHMEFCRVCKDGGELLCCDTCPSSY-HIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp SSCSSCTTTCCCSSCBCCSSSCCCB-CSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred CCCCcCCCCCCCCCEEEcCCCCHHH-cccccCCCcCcCCCCccCChhhcCch
Confidence 3446799998754333333565555 6667653 222356799997653
No 204
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=48.76 E-value=9 Score=26.21 Aligned_cols=40 Identities=25% Similarity=0.619 Sum_probs=29.4
Q ss_pred cccccccccCCceE---EcCCCCccchHhhHHHHhccCCccccc
Q 040660 434 SSCVICLDAPVEGA---CVPCGHMAGCMSCLNEVKAKKWGCPVC 474 (487)
Q Consensus 434 ~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~~~~~~~CP~C 474 (487)
..|-.|.....+.. .-.|++.| |.+|-.-+-..--.||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 35999988775544 35788989 999977665544479988
No 205
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=46.67 E-value=10 Score=26.06 Aligned_cols=46 Identities=28% Similarity=0.667 Sum_probs=29.3
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHHh----ccCCcccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEVK----AKKWGCPVCRAN 477 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~~~~~CP~Cr~~ 477 (487)
+....|.||.+.-.-...--|--.| ...|+..-. ...+.||.|+..
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAY-HMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEE-EHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhh-hhhccCCCCCCCCCCceECcccccc
Confidence 3346899998754333334666666 888877522 235689999763
No 206
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=46.16 E-value=73 Score=27.07 Aligned_cols=132 Identities=12% Similarity=-0.009 Sum_probs=84.1
Q ss_pred CCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCC-hHHHHHHhCCCcHHHHHHHHHcCCCccccCCCCCCCcHHHH
Q 040660 4 QQSKEELLYQQVNYGNVEGIKALCRDGAGLEWIDKEGK-TPLIAACMNPGLYDVAKTLIELGAKVDAYRPGRHGGTPLHH 82 (487)
Q Consensus 4 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~-TpL~~A~~~~g~~~~v~~Ll~~ga~~~~~~~d~~g~TpLh~ 82 (487)
-.+.++-|-.|...|++++...+.+.. + +..-+ ..=..|... |++++++.-..+-.|+.. .+.+
T Consensus 5 ~~D~~~rF~LAL~lg~l~~A~e~a~~l---~--~~~~Wk~Lg~~AL~~-gn~~lAe~cy~~~~D~~~---------L~~L 69 (177)
T 3mkq_B 5 VQDPHIRFDLALEYGNLDAALDEAKKL---N--DSITWERLIQEALAQ-GNASLAEMIYQTQHSFDK---------LSFL 69 (177)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHH---C--CHHHHHHHHHHHHHT-TCHHHHHHHHHHTTCHHH---------HHHH
T ss_pred cCChHHHHHHHHhcCCHHHHHHHHHHh---C--CHHHHHHHHHHHHHc-CChHHHHHHHHHhCCHHH---------HHHH
Confidence 456678899999999999998877642 1 11112 222345555 999999998887666553 3555
Q ss_pred HHHhCCHHHHHHHHHcCCCcccccCCCCCHHHHHHHcCCH-HHHHHHHhCCCcccccccccCCCCHHHHHhhhcCCHHHH
Q 040660 83 AAKRGLERTVKLLLSYGANALVLNDDCQTPLEVARAKGFT-NVVRAIENHICIFSGWLRELYGPGFLELLAPQLLSRKVW 161 (487)
Q Consensus 83 Aa~~g~~~~v~~Ll~~ga~~~~~d~~g~TpL~~A~~~g~~-~~v~~Ll~~ga~~~~~~~d~~G~t~L~~~a~~~~~~~~~ 161 (487)
....|+.+-++.|.+. -....+-..+.+.+...|.+ +++++|.+.|--.. +.. .|..++..++.
T Consensus 70 y~~tg~~e~L~kla~i----A~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e----------A~~-~A~t~g~~~~a 134 (177)
T 3mkq_B 70 YLVTGDVNKLSKMQNI----AQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL----------AYA-VAKANGDEAAA 134 (177)
T ss_dssp HHHHTCHHHHHHHHHH----HHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH----------HHH-HHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHH----HHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH----------HHH-HHHHcCcHHHH
Confidence 5667888777766432 11223344577778778876 68888877664322 233 55667777776
Q ss_pred HHhh
Q 040660 162 VAVL 165 (487)
Q Consensus 162 ~~Ll 165 (487)
+.++
T Consensus 135 ~~~~ 138 (177)
T 3mkq_B 135 SAFL 138 (177)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 207
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.50 E-value=3.1 Score=30.02 Aligned_cols=47 Identities=23% Similarity=0.710 Sum_probs=33.5
Q ss_pred CcccccccccccC-----CceEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660 431 DATSSCVICLDAP-----VEGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 431 ~~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
.....|..|.+.+ .-.+.--|.|.+ |..|-.......+.|-+|-+..
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rV-C~~Crv~~~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLV-CRDCRIQESNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEEC-CTTSEEECSTTCEEEHHHHSSC
T ss_pred CCccchhhhCccccccccCCCcCcccChhh-cccccccCCCCCEEEeeCchhh
Confidence 4457899999865 445567899999 9999655444456798886643
No 208
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=38.49 E-value=6 Score=34.90 Aligned_cols=47 Identities=19% Similarity=0.504 Sum_probs=28.7
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHH----HhccCCccccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNE----VKAKKWGCPVCRANI 478 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~~~~~~~CP~Cr~~i 478 (487)
.....|.||.+.-.-..+-.|...| ...|... +....+.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g~ll~Cd~C~~~~-H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGGDLLCCEKCPKVF-HLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCEEEEECSSSSCEE-CTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCceEEcCCCCCcc-CCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3446799998664433334666555 6777643 222356899998643
No 209
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.32 E-value=7.5 Score=29.33 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=26.4
Q ss_pred CcccccccccccCC---ceEEcCCCCccchHhhHHH----HhccCCcccccccc
Q 040660 431 DATSSCVICLDAPV---EGACVPCGHMAGCMSCLNE----VKAKKWGCPVCRAN 477 (487)
Q Consensus 431 ~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~~~~~CP~Cr~~ 477 (487)
.+...|.||..... -...--|...| ...|+.. +-...+.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~-H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNY-HIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEE-CSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchh-ccccCCCCcccCCCCCcCCccCcCc
Confidence 34457999987643 22223566444 5556542 22235579999764
No 210
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=36.35 E-value=56 Score=31.67 Aligned_cols=49 Identities=20% Similarity=0.161 Sum_probs=32.3
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCcc------------C--CCCChHHHHHHhCCCcHHHHHHHHH
Q 040660 13 QQVNYGNVEGIKALCRDGAGLEWI------------D--KEGKTPLIAACMNPGLYDVAKTLIE 62 (487)
Q Consensus 13 ~Aa~~g~~~~v~~Ll~~g~~~~~~------------d--~~G~TpL~~A~~~~g~~~~v~~Ll~ 62 (487)
+.+..|+...|+..|..|.+++.+ + .-|.|.+|+|++. .+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~-~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRF-QRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhh-hhhhHHHHhhh
Confidence 345679999999999998886532 1 1255666666666 55556555554
No 211
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=35.35 E-value=54 Score=24.49 Aligned_cols=44 Identities=20% Similarity=0.634 Sum_probs=24.1
Q ss_pred cccccccccccCCceEEc---C--CC-CccchHhhHHHHh--ccCCccccccccc
Q 040660 432 ATSSCVICLDAPVEGACV---P--CG-HMAGCMSCLNEVK--AKKWGCPVCRANI 478 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~---p--Cg-H~~~C~~C~~~~~--~~~~~CP~Cr~~i 478 (487)
+..-| ||....-. .++ . |. ..| ...|+..-. ..++.||.|+..-
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~Wf-H~~CVgl~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWF-HFACVGLTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCC-CSTTTTCSSCCCSSCCCTTTCCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCE-ecccCCcCcCCCCCEECcCccCcC
Confidence 34456 99875432 233 3 44 344 667765211 1255799997654
No 212
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=34.76 E-value=13 Score=26.67 Aligned_cols=51 Identities=20% Similarity=0.417 Sum_probs=31.0
Q ss_pred CCcccccccccccCCceEE---cCCCCccchHhhHHHHhc----cCCccccccccccce
Q 040660 430 KDATSSCVICLDAPVEGAC---VPCGHMAGCMSCLNEVKA----KKWGCPVCRANISQV 481 (487)
Q Consensus 430 ~~~~~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~~~ 481 (487)
..+...|.||........+ -.|.-.| -..|+..-.. ..+.||.|+..+.+.
T Consensus 15 ~~~~~~C~~C~~~~~~~~mi~CD~C~~wf-H~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 15 GNQIWICPGCNKPDDGSPMIGCDDCDDWY-HWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp SCEEECBTTTTBCCSSCCEEECSSSSSEE-EHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCCCcCCCCCCCCCCCCCEEEcCCCCccc-ccccCCCCccCCCCCCEEChhccCchhhc
Confidence 3445679999865432222 3566555 7788654322 245799998876543
No 213
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.62 E-value=17 Score=27.13 Aligned_cols=46 Identities=20% Similarity=0.599 Sum_probs=27.5
Q ss_pred CcccccccccccCCceEEcCCCCccchHhhHHHH----hccCCcccccccc
Q 040660 431 DATSSCVICLDAPVEGACVPCGHMAGCMSCLNEV----KAKKWGCPVCRAN 477 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~~~~~CP~Cr~~ 477 (487)
+....|.||.+.-.-...--|--.| -..|+..- -...+.||.|+..
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~f-H~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCF-HLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEE-CTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCce-ecccCCCCCCCCcCCCcCCccccCC
Confidence 4446899999765433334555444 56665332 2235679999753
No 214
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=31.05 E-value=27 Score=25.97 Aligned_cols=48 Identities=21% Similarity=0.540 Sum_probs=28.3
Q ss_pred CcccccccccccC--CceEE---cCCCCccchHhhHHH--HhccCCcccccccccc
Q 040660 431 DATSSCVICLDAP--VEGAC---VPCGHMAGCMSCLNE--VKAKKWGCPVCRANIS 479 (487)
Q Consensus 431 ~~~~~C~iC~~~~--~~~~~---~pCgH~~~C~~C~~~--~~~~~~~CP~Cr~~i~ 479 (487)
++...|.||.+.. ..-.+ --|.-.| -..|... +-...+.||.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~f-H~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAV-HQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCC-CHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchh-hcccCCCCccCCCceECccccCccc
Confidence 3446899999764 11122 3555444 6667653 2234668999976543
No 215
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=30.09 E-value=12 Score=25.99 Aligned_cols=46 Identities=24% Similarity=0.568 Sum_probs=27.2
Q ss_pred cccccccccccC-----CceEEcCCCCccchHhhHHH------H-hccCCccccccccc
Q 040660 432 ATSSCVICLDAP-----VEGACVPCGHMAGCMSCLNE------V-KAKKWGCPVCRANI 478 (487)
Q Consensus 432 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~------~-~~~~~~CP~Cr~~i 478 (487)
+...|.||.... .-...-.|.-.| ...|... + ....+.|+.|....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~-H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGY-HQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEE-ETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHH-HhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 446899998762 222223666555 6666543 2 23467899997654
No 216
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=29.58 E-value=44 Score=32.26 Aligned_cols=47 Identities=23% Similarity=0.645 Sum_probs=34.0
Q ss_pred CcccccccccccCCceEEc--CCCCccchHhhHHHHhc----------cCCccccccccc
Q 040660 431 DATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKA----------KKWGCPVCRANI 478 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~----------~~~~CP~Cr~~i 478 (487)
....-|.+|-+.-.-..+- .|...| |..|+.++.. ..+.|=+|....
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~F-C~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCY-CFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEE-CHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcch-HHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3446899999876544444 788888 9999998752 256899997654
No 217
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=28.96 E-value=11 Score=26.28 Aligned_cols=46 Identities=22% Similarity=0.632 Sum_probs=28.2
Q ss_pred cccccccccccCCceEEcCCCCccchHhhHHH----HhccCCccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVPCGHMAGCMSCLNE----VKAKKWGCPVCRANI 478 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~~~~~~~CP~Cr~~i 478 (487)
....|.||.+.-.-...--|.-.| ...|+.. +....+.||.|...-
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~ppl~~~P~g~W~C~~C~~~~ 56 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAF-HLACLSPPLREIPSGTWRCSSCLQAT 56 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEE-CTTTSSSCCSSCCSSCCCCHHHHHTC
T ss_pred CCCCCccCCCCCCEEEcCCCChhh-cccccCCCcCcCCCCCeECccccCcc
Confidence 345899999765433334666555 6667653 222356799997644
No 218
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=28.30 E-value=4.9 Score=30.10 Aligned_cols=48 Identities=19% Similarity=0.504 Sum_probs=29.4
Q ss_pred cccccccccccCC---ceEE--cCCCCccchHhhHHH--------HhccCCccccccccccc
Q 040660 432 ATSSCVICLDAPV---EGAC--VPCGHMAGCMSCLNE--------VKAKKWGCPVCRANISQ 480 (487)
Q Consensus 432 ~~~~C~iC~~~~~---~~~~--~pCgH~~~C~~C~~~--------~~~~~~~CP~Cr~~i~~ 480 (487)
....|.||..... +.++ --|...| ...|... +....+.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~y-H~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLY-HQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEE-ETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeE-cCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 3468999997632 2222 3666555 6677543 23346789999776543
No 219
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=28.27 E-value=4.8 Score=27.26 Aligned_cols=43 Identities=30% Similarity=0.788 Sum_probs=23.3
Q ss_pred Cccccccccccc-CCceEEcCCCCcc------chHhhHHHHhcc----CCcccccccc
Q 040660 431 DATSSCVICLDA-PVEGACVPCGHMA------GCMSCLNEVKAK----KWGCPVCRAN 477 (487)
Q Consensus 431 ~~~~~C~iC~~~-~~~~~~~pCgH~~------~C~~C~~~~~~~----~~~CP~Cr~~ 477 (487)
++...|.||+.. +.+ -|||.+ +|..|.-++..+ .+.|-+||+.
T Consensus 7 ~d~~~C~iC~KTKFAD----G~Gh~C~yCk~r~CaRCGg~v~lr~~k~~WvC~lC~k~ 60 (62)
T 2a20_A 7 GDAPTCGICHKTKFAD----GCGHNCSYCQTKFCARCGGRVSLRSNKVMWVCNLCRKQ 60 (62)
T ss_dssp SCCCCCSSSSCSCCCS----SCCEEBTTTCCEECTTSEEEEESSTTCEEEEEHHHHHH
T ss_pred CCcchhhhhccceecc----CCCccccccCCeeecccCCEeeecCCeEEEEehhhhhc
Confidence 344689999853 233 466652 155554444322 2247777653
No 220
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=28.07 E-value=39 Score=20.59 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=14.1
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 040660 10 LLYQQVNYGNVEGIKALCR 28 (487)
Q Consensus 10 ~L~~Aa~~g~~~~v~~Ll~ 28 (487)
-+..|+..|+++.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4667888888888877743
No 221
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=27.65 E-value=47 Score=27.65 Aligned_cols=47 Identities=23% Similarity=0.609 Sum_probs=31.1
Q ss_pred CcccccccccccCCceEEc--CCCCccchHhhHHHHhc----------cCCccccccccc
Q 040660 431 DATSSCVICLDAPVEGACV--PCGHMAGCMSCLNEVKA----------KKWGCPVCRANI 478 (487)
Q Consensus 431 ~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~----------~~~~CP~Cr~~i 478 (487)
....-|.||-+.-.-...- .|-..| |..|+.++.. ..+.|=+|....
T Consensus 77 G~~~yC~wC~~Gg~l~~Cdn~~C~r~F-C~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 77 GYQSYCTICCGGREVLMCGNNNCCRCF-CVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp SSBSSCTTTSCCSEEEECSSTTTCCEE-EHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred CCcceeeEecCCCeEEeeCCCCCCCch-hHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 3446899998764222222 466777 9999988743 245798887644
No 222
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=24.25 E-value=37 Score=28.75 Aligned_cols=15 Identities=33% Similarity=0.740 Sum_probs=11.7
Q ss_pred ccccccccccceeEe
Q 040660 470 GCPVCRANISQVIRL 484 (487)
Q Consensus 470 ~CP~Cr~~i~~~~~~ 484 (487)
.||+|..+-..|.++
T Consensus 155 ~CP~Cg~~~~~F~~~ 169 (170)
T 3pwf_A 155 YCPVCGAPKEKFVVF 169 (170)
T ss_dssp BCTTTCCBGGGCEEE
T ss_pred CCCCCCCCHHHceec
Confidence 799999887766654
No 223
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=23.74 E-value=76 Score=23.09 Aligned_cols=31 Identities=23% Similarity=0.522 Sum_probs=23.0
Q ss_pred cccccccccccCC----ceEEcCCCCccchHhhHHH
Q 040660 432 ATSSCVICLDAPV----EGACVPCGHMAGCMSCLNE 463 (487)
Q Consensus 432 ~~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~ 463 (487)
+...|.+|...+. .--.-.||+.| |..|...
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~-C~~Cs~~ 54 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVL-CGDCSRH 54 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEE-CTGGGCC
T ss_pred CCCCCcCcCCccccchhcccccCCCcEE-ChHHhCC
Confidence 3458999988763 23346899999 9999765
No 224
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=23.45 E-value=38 Score=26.62 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=33.0
Q ss_pred cccccccccCC---ceEEcCCCCccchHhhHHHHhccCCccccccccccc
Q 040660 434 SSCVICLDAPV---EGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANISQ 480 (487)
Q Consensus 434 ~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 480 (487)
..|..|..... ...+..=|..+ |..|..++...+..|-.|.++|..
T Consensus 33 F~C~~C~~~L~~~~~~~~~~~g~~y-C~~cy~~~f~~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 33 LKCSSCQAQLGDIGTSSYTKSGMIL-CRNDYIRLFGNSGAGGSGGHMGSG 81 (122)
T ss_dssp HCCSSSCCCTTTSEECCEEETTEEE-CHHHHHHHHCCCCSSSCSSCCSCC
T ss_pred CCcCCCCCcccccCCeEEEECCeee-cHHHHHHHcCCCCccccCCCCcCc
Confidence 56777776664 23344566666 999998876544479999999974
No 225
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=23.38 E-value=38 Score=25.09 Aligned_cols=30 Identities=30% Similarity=0.573 Sum_probs=22.0
Q ss_pred ccccccccccCCc----eEEcCCCCccchHhhHHH
Q 040660 433 TSSCVICLDAPVE----GACVPCGHMAGCMSCLNE 463 (487)
Q Consensus 433 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~ 463 (487)
...|.+|...+.- --.-.||+.| |..|...
T Consensus 9 ~~~C~~C~~~F~~~~RrHHCR~CG~vf-C~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKEYGCKNCGRAF-CNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSSSCEEECSSSCCEE-ETTTSCE
T ss_pred CCCCcCcCCcccCccccccCCCCCCEE-ChhHcCC
Confidence 3579999886542 2345899999 9999754
No 226
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=23.21 E-value=18 Score=27.87 Aligned_cols=28 Identities=25% Similarity=0.644 Sum_probs=16.9
Q ss_pred ceEEcCCCCccchHhhHHHHhccCCccccccccc
Q 040660 445 EGACVPCGHMAGCMSCLNEVKAKKWGCPVCRANI 478 (487)
Q Consensus 445 ~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 478 (487)
.+.+..||+.| + ..+ .....||.|+..-
T Consensus 67 p~~C~~CG~~F-~----~~~-~kPsrCP~CkSe~ 94 (105)
T 2gmg_A 67 PAQCRKCGFVF-K----AEI-NIPSRCPKCKSEW 94 (105)
T ss_dssp CCBBTTTCCBC-C----CCS-SCCSSCSSSCCCC
T ss_pred CcChhhCcCee-c----ccC-CCCCCCcCCCCCc
Confidence 34456899988 2 111 1234799998754
No 227
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=23.05 E-value=35 Score=22.77 Aligned_cols=17 Identities=24% Similarity=0.843 Sum_probs=11.9
Q ss_pred CCccccccccccceeEe
Q 040660 468 KWGCPVCRANISQVIRL 484 (487)
Q Consensus 468 ~~~CP~Cr~~i~~~~~~ 484 (487)
.+.||+|...-.+|.++
T Consensus 36 dw~CP~Cg~~K~~F~~~ 52 (54)
T 4rxn_A 36 DWVCPLCGVGKDEFEEV 52 (54)
T ss_dssp TCBCTTTCCBGGGEEEC
T ss_pred CCcCcCCCCcHHHceEc
Confidence 34699998877666653
No 228
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=22.90 E-value=32 Score=27.40 Aligned_cols=30 Identities=23% Similarity=0.672 Sum_probs=22.4
Q ss_pred cccccccccCCc----eEEcCCCCccchHhhHHHH
Q 040660 434 SSCVICLDAPVE----GACVPCGHMAGCMSCLNEV 464 (487)
Q Consensus 434 ~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~ 464 (487)
..|.+|...+.- -.+-.||+.| |..|....
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf-C~~Cs~~~ 103 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF-CAECSAKN 103 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCEE
T ss_pred CCCcCcCCccccccccccCCCCCeEE-ChHHhCCc
Confidence 579999887642 2345899999 99997653
No 229
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=22.42 E-value=42 Score=22.16 Aligned_cols=16 Identities=44% Similarity=1.051 Sum_probs=11.3
Q ss_pred CccccccccccceeEe
Q 040660 469 WGCPVCRANISQVIRL 484 (487)
Q Consensus 469 ~~CP~Cr~~i~~~~~~ 484 (487)
+.||+|...-..|.++
T Consensus 36 w~CP~Cg~~K~~F~~~ 51 (52)
T 1yk4_A 36 WVCPLCGAPKSEFERI 51 (52)
T ss_dssp CBCTTTCCBGGGEEEE
T ss_pred CcCCCCCCCHHHcEEC
Confidence 3688888877666653
No 230
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=22.17 E-value=20 Score=27.20 Aligned_cols=42 Identities=19% Similarity=0.553 Sum_probs=22.2
Q ss_pred cccccccccCCceEEc---CCCCccchHhhHHHHhc---cCCcccccccc
Q 040660 434 SSCVICLDAPVEGACV---PCGHMAGCMSCLNEVKA---KKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~---pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~ 477 (487)
..| ||........++ .|.-.| -..|+..-.. ..+.||.|+..
T Consensus 29 vrC-iC~~~~~~~~mi~Cd~C~~w~-H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 29 TRC-ICGFTHDDGYMICCDKCSVWQ-HIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp CCC-TTSCCSCSSCEEEBTTTCBEE-ETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred EEe-ECCCccCCCcEEEcCCCCCcC-cCcCCCCCccCCCCCEECCCCcCC
Confidence 456 786544333333 555444 5556533211 24579999753
No 231
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=22.07 E-value=27 Score=27.48 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=19.6
Q ss_pred CCceEEcCCCCccchHhhHHHHhccCC-ccccccccccce
Q 040660 443 PVEGACVPCGHMAGCMSCLNEVKAKKW-GCPVCRANISQV 481 (487)
Q Consensus 443 ~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~~ 481 (487)
+....+..|||.| .+..... .||.|..+...+
T Consensus 71 p~~~~C~~CG~~~-------e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 71 KVELECKDCSHVF-------KPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CCEEECSSSSCEE-------CSCCSTTCCCSSSSSCCCEE
T ss_pred cceEEcCCCCCEE-------eCCCCCCCcCccccCCCcEE
Confidence 3444456788877 2223345 699998875544
No 232
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=21.66 E-value=39 Score=25.13 Aligned_cols=46 Identities=28% Similarity=0.600 Sum_probs=30.2
Q ss_pred ccccccccccCC----ceEEcCCCCccchHhhHHHHhc------cCCcccccccccc
Q 040660 433 TSSCVICLDAPV----EGACVPCGHMAGCMSCLNEVKA------KKWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~ 479 (487)
...|.+|...+. .-..-.||+.| |..|...... ....|-.|...+.
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~-C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 75 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVF-CGVCCNRKCKLQYLEKEARVCVVCYETIS 75 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCEEEEETTTTEEEEECHHHHHHHH
T ss_pred CCcCcCCCCcccchhhCccccCCCCEE-CCcccCCeeecCCCCCCCeECHHHHHHHH
Confidence 357999987653 33456899999 9999765321 1224777765554
No 233
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.48 E-value=13 Score=29.46 Aligned_cols=43 Identities=26% Similarity=0.595 Sum_probs=27.5
Q ss_pred cccccccccCC----ceEEcCCCCccchHhhHHHHhccCCcccccccc
Q 040660 434 SSCVICLDAPV----EGACVPCGHMAGCMSCLNEVKAKKWGCPVCRAN 477 (487)
Q Consensus 434 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 477 (487)
..|..|...+. .-.+-.||..| |..|..........|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if-C~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF-CMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE-CGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCee-CHHHhCCCCCCceECHHHHHH
Confidence 47999987663 23346899999 999965433223357777553
No 234
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=20.59 E-value=14 Score=25.11 Aligned_cols=44 Identities=23% Similarity=0.697 Sum_probs=26.5
Q ss_pred cccccccccCCceEEcCCCCccchHhhHHH-H---hccCCccccccccc
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGCMSCLNE-V---KAKKWGCPVCRANI 478 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~---~~~~~~CP~Cr~~i 478 (487)
..|.||.+.-.-...--|.-.| ...|+.. + ....+.||.|+...
T Consensus 6 ~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 6 DFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp SSCTTTCCCSSCEECSSSSCEE-CGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCcCCCCCCcEEEcCCCCcCE-ECCcCCCCcCCCCCCceEChhccChh
Confidence 5799998764433334666555 6667653 1 22355799997644
No 235
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=20.52 E-value=87 Score=22.03 Aligned_cols=44 Identities=20% Similarity=0.675 Sum_probs=25.2
Q ss_pred cccccccccccCCceEEcC-----CC-CccchHhhHHHHhc---cCCcccccccccc
Q 040660 432 ATSSCVICLDAPVEGACVP-----CG-HMAGCMSCLNEVKA---KKWGCPVCRANIS 479 (487)
Q Consensus 432 ~~~~C~iC~~~~~~~~~~p-----Cg-H~~~C~~C~~~~~~---~~~~CP~Cr~~i~ 479 (487)
+..-| ||....-. .++- |. ..| ...|+. +.. ..+.||.|+..-.
T Consensus 15 ~~~~C-~C~~~~~g-~MI~CD~~~C~~~wf-H~~Cvg-l~~~p~g~w~Cp~C~~~~~ 67 (71)
T 1wen_A 15 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWF-HFACVG-LTTKPRGKWFCPRCSQESG 67 (71)
T ss_dssp SCCCS-TTCCCSCS-SEECCSCSSCSCCCE-ETTTTT-CSSCCSSCCCCTTTSSCSS
T ss_pred CCCEE-ECCCCCCC-CEeEeeCCCCCCccE-ecccCC-cCcCCCCCEECCCCCcccc
Confidence 34556 89875332 2333 54 355 777766 322 2457999987543
No 236
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.27 E-value=45 Score=24.31 Aligned_cols=17 Identities=35% Similarity=0.831 Sum_probs=13.0
Q ss_pred CCccccccccccceeEe
Q 040660 468 KWGCPVCRANISQVIRL 484 (487)
Q Consensus 468 ~~~CP~Cr~~i~~~~~~ 484 (487)
.+.||+|..+-..|.++
T Consensus 60 dW~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 60 DWSCPDCGAAKSDFEMV 76 (81)
T ss_dssp TCCCTTTCCCGGGEEEE
T ss_pred CCcCCCCCCCHHHcEEc
Confidence 34699999988777664
No 237
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.11 E-value=46 Score=25.79 Aligned_cols=23 Identities=22% Similarity=0.573 Sum_probs=20.0
Q ss_pred cccccccccCCceEEcCCCCccch
Q 040660 434 SSCVICLDAPVEGACVPCGHMAGC 457 (487)
Q Consensus 434 ~~C~iC~~~~~~~~~~pCgH~~~C 457 (487)
..|..|......-+++-|||.. |
T Consensus 25 ~~C~~C~~~~~~W~CL~CG~vg-C 47 (109)
T 3c5k_A 25 QPCGDCGTIQENWVCLSCYQVY-C 47 (109)
T ss_dssp CCCTTTCCCSSEEEETTTCCEE-E
T ss_pred CcCccccCCCCeeeeeecCccc-c
Confidence 4799999887777889999998 7
No 238
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=20.07 E-value=46 Score=24.18 Aligned_cols=46 Identities=24% Similarity=0.546 Sum_probs=29.0
Q ss_pred ccccccccccCCc----eEEcCCCCccchHhhHHHHhc------cCCcccccccccc
Q 040660 433 TSSCVICLDAPVE----GACVPCGHMAGCMSCLNEVKA------KKWGCPVCRANIS 479 (487)
Q Consensus 433 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~------~~~~CP~Cr~~i~ 479 (487)
...|.+|...+.- --.-.||..| |..|...... ....|-.|...+.
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~-C~~Cs~~~~~l~~~~~~~RVC~~C~~~l~ 74 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIF-CNTCSSNELALPSYPKPVRVCDSCHTLLL 74 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEE-CSGGGCEEECCTTCSSCEEECHHHHHHTT
T ss_pred CCcccCcCCcccCccccccCCCCCCEE-ChHHhCCeeecCCCCCcCEECHHHHHHHH
Confidence 3579999887642 2345899999 9999765321 1114666655443
Done!