BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040661
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2WMF|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
           Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
           ( Sp4gh98) In Its Native Form
          Length = 581

 Score = 26.9 bits (58), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1   YHANLWHSFKTKPLHTSIGIDALRRKFWFQGI 32
           YH NL  + K  P+    G D++   FW  G+
Sbjct: 203 YHKNLVLATKNTPIRDDAGTDSIVSGFWLSGL 234


>pdb|2WMG|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
           Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
           ( Sp4gh98) In Complex With The Lewisy Pentasaccharide
           Blood Group Antigen
          Length = 581

 Score = 26.9 bits (58), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1   YHANLWHSFKTKPLHTSIGIDALRRKFWFQGI 32
           YH NL  + K  P+    G D++   FW  G+
Sbjct: 203 YHKNLVLATKNTPIRDDAGTDSIVSGFWLSGL 234


>pdb|2WMH|A Chain A, Crystal Structure Of The Catalytic Module Of A Family 98
           Glycoside Hydrolase From Streptococcus Pneumoniae Tigr4
           In Complex With The H-Disaccharide Blood Group Antigen
          Length = 581

 Score = 26.9 bits (58), Expect = 7.5,   Method: Compositional matrix adjust.
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1   YHANLWHSFKTKPLHTSIGIDALRRKFWFQGI 32
           YH NL  + K  P+    G D++   FW  G+
Sbjct: 203 YHKNLVLATKNTPIRDDAGTDSIVSGFWLSGL 234


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.138    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,138,433
Number of Sequences: 62578
Number of extensions: 166082
Number of successful extensions: 320
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 4
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.5 bits)