BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040661
         (207 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P44023|Y594_HAEIN Uncharacterized protein HI_0594 OS=Haemophilus influenzae (strain
           ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0594 PE=4 SV=1
          Length = 509

 Score = 32.7 bits (73), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 31/163 (19%)

Query: 68  MGALMNNAYKGSHIFNSAIFGSQSG---------RIFALKYGSASIFLLVSFFCSSVALG 118
           + A M  A+   + F+  I  + +G         R   L  G+  +   + ++C  +   
Sbjct: 209 LAASMGTAFSTINPFSVVIASNAAGIQFTEGIGFRALGLVLGATCVIAYLYWYCKKIK-- 266

Query: 119 FLTDANFMVNACGDDQFSYRAHTQSIFERGFTLAFIGNRSL-----CMSFPMLLW--MFG 171
              D +F  +   DD+  +R      F+   T+ F   R L     C+SFP+++W  M G
Sbjct: 267 --ADPSF--SYTYDDREEFRQRYMKNFDPNTTIPFSARRKLILTLFCISFPIMIWGVMVG 322

Query: 172 P--LPVALAS-------VALVWGLYELDFAGKSTRRESNLVSV 205
               P   AS       +  + GL E D     T   S LV V
Sbjct: 323 GWWFPQMAASFLAITIIIMFISGLSEKDIMESFTEGASELVGV 365


>sp|Q9WDG5|CAPSD_PMMV2 Capsid protein OS=Pepper mild mottle virus (strain P2) GN=CP PE=2
           SV=3
          Length = 157

 Score = 32.3 bits (72), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 5/66 (7%)

Query: 36  DDKKGMLAVQSLRN-----TLMATILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQ 90
           D +  ++ V++ +N     TL AT+      + I  ++  +MN   +G+ ++N A+F S 
Sbjct: 89  DTRNRIIEVENPQNPTTAETLDATMRVDDATVAIRASISPIMNELVRGTGMYNQALFESA 148

Query: 91  SGRIFA 96
           SG  +A
Sbjct: 149 SGLTWA 154


>sp|Q83482|CAPSD_TOMKO Capsid protein OS=Tomato mosaic virus (strain Korean) GN=CP PE=3
           SV=3
          Length = 157

 Score = 31.2 bits (69), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 36  DDKKGMLAVQSLRN-----TLMATILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQ 90
           D +  ++ V++ +N     TL AT       + I  ++  LMN   +G+ ++N A+F S 
Sbjct: 89  DTRNRIIEVENPQNPTTAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESA 148

Query: 91  SGRIFA 96
           SG  +A
Sbjct: 149 SGLTWA 154


>sp|P69510|CAPSD_PMMVS Capsid protein OS=Pepper mild mottle virus (strain Spain) GN=CP
           PE=3 SV=2
          Length = 157

 Score = 30.8 bits (68), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 36  DDKKGMLAVQSLRN-----TLMATILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQ 90
           D +  ++ V++ +N     TL AT       + I  ++  LMN   +G+ ++N A+F S 
Sbjct: 89  DTRNRIIEVENPQNPTTAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESA 148

Query: 91  SGRIFA 96
           SG  +A
Sbjct: 149 SGLTWA 154


>sp|P69509|CAPSD_PMMVJ Capsid protein OS=Pepper mild mottle virus (strain Japan) GN=CP
           PE=2 SV=2
          Length = 157

 Score = 30.8 bits (68), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)

Query: 36  DDKKGMLAVQSLRN-----TLMATILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQ 90
           D +  ++ V++ +N     TL AT       + I  ++  LMN   +G+ ++N A+F S 
Sbjct: 89  DTRNRIIEVENPQNPTTAETLDATRRVDDATVAIRASISNLMNELVRGTGMYNQALFESA 148

Query: 91  SGRIFA 96
           SG  +A
Sbjct: 149 SGLTWA 154


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.327    0.138    0.421 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,703,639
Number of Sequences: 539616
Number of extensions: 2425556
Number of successful extensions: 5776
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 5775
Number of HSP's gapped (non-prelim): 8
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 58 (26.9 bits)