Query 040661
Match_columns 207
No_of_seqs 107 out of 273
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 10:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040661.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040661hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04654 DUF599: Protein of un 100.0 2.6E-65 5.7E-70 435.3 19.5 191 1-195 14-212 (216)
2 COG3821 Predicted membrane pro 100.0 4.2E-51 9.1E-56 340.2 16.4 177 16-194 33-219 (234)
3 COG3462 Predicted membrane pro 48.2 18 0.0004 28.1 2.7 44 147-191 30-73 (117)
4 PF11808 DUF3329: Domain of un 43.1 69 0.0015 23.4 5.0 29 159-187 15-43 (90)
5 PF07578 LAB_N: Lipid A Biosyn 30.4 47 0.001 23.9 2.3 28 162-192 27-54 (72)
6 PRK10278 hypothetical protein; 28.6 3E+02 0.0065 21.8 7.0 32 92-123 72-109 (130)
7 PF08566 Pam17: Mitochondrial 28.5 38 0.00082 28.4 1.8 14 161-174 85-98 (173)
8 PF11755 DUF3311: Protein of u 27.6 90 0.002 21.7 3.3 32 159-192 24-55 (66)
9 TIGR02106 cyd_oper_ybgT cyd op 26.7 1.4E+02 0.003 17.9 3.5 20 165-186 3-22 (30)
10 PF10658 DUF2484: Protein of u 26.5 1.7E+02 0.0038 21.3 4.7 39 150-188 26-67 (77)
11 PRK10747 putative protoheme IX 25.3 3E+02 0.0065 25.0 7.3 60 95-160 37-96 (398)
12 cd01223 PH_Vav Vav pleckstrin 25.0 36 0.00078 26.6 1.0 33 2-34 77-109 (116)
13 COG3952 Predicted membrane pro 24.3 80 0.0017 24.5 2.7 28 162-192 55-82 (113)
14 COG4818 Predicted membrane pro 22.7 1.6E+02 0.0035 22.5 4.0 34 162-195 54-87 (105)
15 PF14017 DUF4233: Protein of u 22.0 1.3E+02 0.0027 23.1 3.5 38 164-201 69-106 (107)
16 PRK14406 membrane protein; Pro 21.6 2.6E+02 0.0057 23.7 5.7 17 63-79 77-93 (199)
17 PF10617 DUF2474: Protein of u 21.2 2.1E+02 0.0045 18.3 3.7 24 166-189 8-31 (40)
No 1
>PF04654 DUF599: Protein of unknown function, DUF599; InterPro: IPR006747 This family includes several uncharacterised proteins.
Probab=100.00 E-value=2.6e-65 Score=435.33 Aligned_cols=191 Identities=28% Similarity=0.443 Sum_probs=182.6
Q ss_pred CeeeehhhhccCCCccHhhHHhhhHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q 040661 1 YHANLWHSFKTKPLHTSIGIDALRRKFWFQGIKEGDDKKGMLAVQSLRNTLMATILTAQIAILITLAMGALMNNAYKGSH 80 (207)
Q Consensus 1 YH~~l~~~~~~~p~~t~~~~~~~~R~~Wv~~m~~r~~~~~ilavqtLrn~~~~~tf~ASTsill~~gl~all~~~~~~~~ 80 (207)
||.|+.++.|++| |+++.|++.|++||++|++|| ++|+|+|+|||++|++||||||||++++|++++++++|+..+
T Consensus 14 Y~~~l~~~~~~~p--t~~~~~~~~R~~W~~~m~~r~--~~ildvq~Lrn~~~~~tffASTailli~g~~all~~~~~~~~ 89 (216)
T PF04654_consen 14 YHLYLERRVRRRP--TLSGIMNQYRRAWMRQMMDRK--NRILDVQTLRNLIMSATFFASTAILLIGGLLALLGSTDKLSS 89 (216)
T ss_pred HHHHHhhhccCCC--hHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHhh
Confidence 8999999999999 889999999999999999877 699999999999999999999999999999999999999988
Q ss_pred ccccccccCC-cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCCCCc-------cchHHHHHHHHHHhHhhh
Q 040661 81 IFNSAIFGSQ-SGRIFALKYGSASIFLLVSFFCSSVALGFLTDANFMVNACGDDQ-------FSYRAHTQSIFERGFTLA 152 (207)
Q Consensus 81 ~~~~~~~~~~-~~~~~~lK~~~ll~~f~~aFf~f~~s~R~~n~~~~li~~p~~~~-------~~~~~~~a~~l~ra~~~f 152 (207)
+.++.+++++ ++..||+|++++++||++|||||+||+||||||+||||+||+++ +.+++++++++++|+++|
T Consensus 90 ~~~~~~~~~~~s~~~~~lK~l~ll~~f~~aFf~f~~s~R~~n~~~~li~~~p~~~~~~~~~~~~~~~~~a~~~~~a~~~f 169 (216)
T PF04654_consen 90 VASDLPFGGSASRFLFELKLLLLLVIFLYAFFKFTWSIRQYNHASFLIGAPPEPPEGDEAEREAFAEYAARVLNRAGNFF 169 (216)
T ss_pred HHhhCCcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccchhhhHHHHHHHHHHHHHHHHH
Confidence 8889888887 77799999999999999999999999999999999999988522 588999999999999999
Q ss_pred hhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhcCcc
Q 040661 153 FIGNRSLCMSFPMLLWMFGPLPVALASVALVWGLYELDFAGKS 195 (207)
Q Consensus 153 n~GlRa~Yfal~ll~W~~gP~~~~~~t~~~V~vLy~~df~S~~ 195 (207)
|.|+|+|||++|+++|++||++++++|+++|.+||+|||.|+-
T Consensus 170 n~GlRa~yfal~~l~W~~gP~~~~~~t~~vv~~L~~rdf~S~~ 212 (216)
T PF04654_consen 170 NRGLRAYYFALPLLLWFFGPWALIAATVLVVAVLYRRDFRSRA 212 (216)
T ss_pred HhhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 9999999999999999999999999999999999999999874
No 2
>COG3821 Predicted membrane protein [Function unknown]
Probab=100.00 E-value=4.2e-51 Score=340.22 Aligned_cols=177 Identities=15% Similarity=0.164 Sum_probs=166.4
Q ss_pred cHhhHHhhhHHHHHHHHhccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCcc-hh
Q 040661 16 TSIGIDALRRKFWFQGIKEGDDKKGMLAVQSLRNTLMATILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQSG-RI 94 (207)
Q Consensus 16 t~~~~~~~~R~~Wv~~m~~r~~~~~ilavqtLrn~~~~~tf~ASTsill~~gl~all~~~~~~~~~~~~~~~~~~~~-~~ 94 (207)
++...|+.+||+||++|..|| .+|+|.|++++++++++|||||++++++|+++++|++|++.++++|.|+...++ ..
T Consensus 33 sL~t~m~~~R~~Wmr~~l~Rd--iriiDtqii~glq~gtaFFASstlialgg~falLgatD~v~~v~~dLp~v~~~sr~a 110 (234)
T COG3821 33 SLNTAMNEIRRRWMRNMLVRD--IRIIDTQIIGGLQNGTAFFASSTLIALGGCFALLGATDRVLSVLSDLPFVAKASRTA 110 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhHhccchHHHHhhHHHHHHHHHHHcCchhHHHHHcCCchhcccCchH
Confidence 889999999999999999999 699999999999999999999999999999999999999999999988887755 49
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhcc-CCCCc--------cchHHHHHHHHHHhHhhhhhhHHHHHHHHHH
Q 040661 95 FALKYGSASIFLLVSFFCSSVALGFLTDANFMVNA-CGDDQ--------FSYRAHTQSIFERGFTLAFIGNRSLCMSFPM 165 (207)
Q Consensus 95 ~~lK~~~ll~~f~~aFf~f~~s~R~~n~~~~li~~-p~~~~--------~~~~~~~a~~l~ra~~~fn~GlRa~Yfal~l 165 (207)
+|+|++++.++|.|+||+|.||+||||||+++||+ |...+ +..++++++++..|+++||.|+|+|||++++
T Consensus 111 felKv~~l~~~f~ysffkFgWs~RlfNyc~iliGa~PM~~~~~~~~~~ae~aaerai~mn~lAak~FN~GlRa~ffsig~ 190 (234)
T COG3821 111 FELKVGGLTVLFAYSFFKFGWSYRLFNYCSILIGAIPMWADNAVDAEAAERAAERAIRMNILAAKHFNAGLRAYFFSIGY 190 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999985 44322 5677888999999999999999999999999
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHhcCc
Q 040661 166 LLWMFGPLPVALASVALVWGLYELDFAGK 194 (207)
Q Consensus 166 l~W~~gP~~~~~~t~~~V~vLy~~df~S~ 194 (207)
+.||++|++++++|++++.+|+||||+|+
T Consensus 191 lgWfi~p~vFm~~T~~vilvL~rRqf~S~ 219 (234)
T COG3821 191 LGWFISPYVFMLSTLGVILVLLRRQFFSE 219 (234)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999995
No 3
>COG3462 Predicted membrane protein [Function unknown]
Probab=48.21 E-value=18 Score=28.14 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=29.7
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Q 040661 147 RGFTLAFIGNRSLCMSFPMLLWMFGPLPVALASVALVWGLYELDF 191 (207)
Q Consensus 147 ra~~~fn~GlRa~Yfal~ll~W~~gP~~~~~~t~~~V~vLy~~df 191 (207)
-++.+|+.|.|+.--+ -+-.|++-|+.-+++-+.+|..+|+.--
T Consensus 30 ~gg~~y~~gy~gm~GG-~yGm~lImpI~~~vvli~lvvfm~~~~g 73 (117)
T COG3462 30 HGGAFYPGGYRGMMGG-LYGMWLIMPIFWAVVLIFLVVFMFYILG 73 (117)
T ss_pred ccCcccCCCccccccc-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777776543222 2346999999988888888887776544
No 4
>PF11808 DUF3329: Domain of unknown function (DUF3329); InterPro: IPR021766 This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=43.12 E-value=69 Score=23.44 Aligned_cols=29 Identities=28% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Q 040661 159 LCMSFPMLLWMFGPLPVALASVALVWGLY 187 (207)
Q Consensus 159 ~Yfal~ll~W~~gP~~~~~~t~~~V~vLy 187 (207)
++....++.|++|+++..++..+++.+.+
T Consensus 15 ~~l~~~lvG~~~g~~~~~l~~~l~~~l~w 43 (90)
T PF11808_consen 15 LLLAAALVGWLFGHLWWALLLGLLLYLFW 43 (90)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45667788899999876666544444444
No 5
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=30.39 E-value=47 Score=23.87 Aligned_cols=28 Identities=14% Similarity=0.415 Sum_probs=23.2
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhc
Q 040661 162 SFPMLLWMFGPLPVALASVALVWGLYELDFA 192 (207)
Q Consensus 162 al~ll~W~~gP~~~~~~t~~~V~vLy~~df~ 192 (207)
.+|...|.++ +..+.++.+..++|.|.+
T Consensus 27 v~P~~FW~lS---l~Gs~lll~Y~i~r~DpV 54 (72)
T PF07578_consen 27 VVPVAFWYLS---LIGSLLLLIYAIIRKDPV 54 (72)
T ss_pred CCcHHHHHHH---HHHHHHHHHHHHHHcChH
Confidence 3688999987 567788889999999975
No 6
>PRK10278 hypothetical protein; Provisional
Probab=28.59 E-value=3e+02 Score=21.82 Aligned_cols=32 Identities=19% Similarity=0.310 Sum_probs=26.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHH------HHHHHHhhhH
Q 040661 92 GRIFALKYGSASIFLLVSFFCS------SVALGFLTDA 123 (207)
Q Consensus 92 ~~~~~lK~~~ll~~f~~aFf~f------~~s~R~~n~~ 123 (207)
..+..-|++++++..+.+++.+ +...|...+.
T Consensus 72 ~~WLt~Kl~~lv~YI~lg~~Al~~k~~~~~~~R~~af~ 109 (130)
T PRK10278 72 GQWLTEKLFGVIIYIVLGFIALDYRRMRSQQARFIAFP 109 (130)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHH
Confidence 4678899999999999999988 5667776555
No 7
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=28.50 E-value=38 Score=28.36 Aligned_cols=14 Identities=29% Similarity=0.650 Sum_probs=11.9
Q ss_pred HHHHHHHHhHhhHH
Q 040661 161 MSFPMLLWMFGPLP 174 (207)
Q Consensus 161 fal~ll~W~~gP~~ 174 (207)
++...+.|++||..
T Consensus 85 ~a~g~lG~L~GP~~ 98 (173)
T PF08566_consen 85 LACGALGWLVGPSL 98 (173)
T ss_pred HHHHHHHHHhcchH
Confidence 56788999999985
No 8
>PF11755 DUF3311: Protein of unknown function (DUF3311); InterPro: IPR021741 This is a family of short bacterial proteins of unknwon function.
Probab=27.64 E-value=90 Score=21.69 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhc
Q 040661 159 LCMSFPMLLWMFGPLPVALASVALVWGLYELDFA 192 (207)
Q Consensus 159 ~Yfal~ll~W~~gP~~~~~~t~~~V~vLy~~df~ 192 (207)
.-+++|.+.|..-- .++.|.+...+.|+.|..
T Consensus 24 ~v~G~Pff~~w~~~--wv~lts~~~~~~y~l~~~ 55 (66)
T PF11755_consen 24 TVFGMPFFYWWQLA--WVVLTSVCMAIVYRLDED 55 (66)
T ss_pred cccCcHHHHHHHHH--HHHHHHHHHHHHHHhccc
Confidence 45778888887643 344555666777887544
No 9
>TIGR02106 cyd_oper_ybgT cyd operon protein YbgT. This model describes a very small (as short as 33 amino acids) protein of unknown function, essentially always found in an operon with CydAB, subunits of the cytochrome d terminal oxidase. It begins with an aromatic motif MWYFXW and appears to contain a membrane-spanning helix. This protein appears to be restricted to the Proteobacteria and exist in a single copy only. We suggest it may be a membrane subunit of the terminal oxidase. The family is named after the E. coli member YbgT. This model excludes the apparently related protein YccB.
Probab=26.72 E-value=1.4e+02 Score=17.92 Aligned_cols=20 Identities=15% Similarity=0.534 Sum_probs=11.0
Q ss_pred HHHHhHhhHHHHHHHHHHHHHH
Q 040661 165 MLLWMFGPLPVALASVALVWGL 186 (207)
Q Consensus 165 ll~W~~gP~~~~~~t~~~V~vL 186 (207)
+++|++|-.. +++..++-.+
T Consensus 3 YfaWilG~~l--A~~~~v~~a~ 22 (30)
T TIGR02106 3 YFAWILGTLL--ACAFGVLNAM 22 (30)
T ss_pred hHHHHHHHHH--HHHHHHHHHH
Confidence 4689999443 3444444333
No 10
>PF10658 DUF2484: Protein of unknown function (DUF2484); InterPro: IPR018919 A role of this family in UDP-N-acetylenolpyruvoylglucosamine reductase, as MurB, could not be confirmed.
Probab=26.50 E-value=1.7e+02 Score=21.26 Aligned_cols=39 Identities=21% Similarity=0.068 Sum_probs=30.4
Q ss_pred hhhhhhHHHHHHHHHHHHHh---HhhHHHHHHHHHHHHHHHH
Q 040661 150 TLAFIGNRSLCMSFPMLLWM---FGPLPVALASVALVWGLYE 188 (207)
Q Consensus 150 ~~fn~GlRa~Yfal~ll~W~---~gP~~~~~~t~~~V~vLy~ 188 (207)
++|..|.=-.-.++|++.|. .||++.+++-.+.+.+|.+
T Consensus 26 ~hw~~a~~Lia~g~pLlg~v~~~~Gp~~gl~~L~ag~S~lRw 67 (77)
T PF10658_consen 26 NHWRPAYVLIAAGIPLLGWVTYQNGPWWGLLVLAAGMSMLRW 67 (77)
T ss_pred hcchhHHHHHHHHhhHhhhhHhhhChHHHHHHHHHHHHHHHh
Confidence 56666666777889998876 6999988888888777754
No 11
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=25.34 E-value=3e+02 Score=25.05 Aligned_cols=60 Identities=7% Similarity=-0.110 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCCCCccchHHHHHHHHHHhHhhhhhhHHHHH
Q 040661 95 FALKYGSASIFLLVSFFCSSVALGFLTDANFMVNACGDDQFSYRAHTQSIFERGFTLAFIGNRSLC 160 (207)
Q Consensus 95 ~~lK~~~ll~~f~~aFf~f~~s~R~~n~~~~li~~p~~~~~~~~~~~a~~l~ra~~~fn~GlRa~Y 160 (207)
+|.-+...++.++..|+-+....| .+..+++.|.. ...-...+--++|-..+..|++++.
T Consensus 37 ie~sl~~~~~~~~~~~~~~~~~~~---~~~~~~~~p~~---~~~~~~~rr~~~~~~~~~~gl~a~~ 96 (398)
T PRK10747 37 IETSVTGLAIILILAMVVLFAIEW---LLRRIFRTGAR---TRGWFVGRKRRRARKQTEQALLKLA 96 (398)
T ss_pred EEehHHHHHHHHHHHHHHHHHHHH---HHHHHHhcchh---hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333343444444444444333333 24455667652 2222333456677778888888776
No 12
>cd01223 PH_Vav Vav pleckstrin homology (PH) domain. Vav pleckstrin homology (PH) domain. Vav acts as a guanosine nucleotide exchange factor(GEF) for Rho/Rac proteins. Mammalian Vav proteins consist of a calponin homology (CH) domain, an acidic region, a rho-GEF (DH)domain, a PH domain, a Zinc finger region and an SH2 domain, flanked by two SH3 domains. In invertebrates such as Drosophila and C.elegans, Vav is missing the N-terminal SH3 domain . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=24.99 E-value=36 Score=26.63 Aligned_cols=33 Identities=15% Similarity=0.021 Sum_probs=24.4
Q ss_pred eeeehhhhccCCCccHhhHHhhhHHHHHHHHhc
Q 040661 2 HANLWHSFKTKPLHTSIGIDALRRKFWFQGIKE 34 (207)
Q Consensus 2 H~~l~~~~~~~p~~t~~~~~~~~R~~Wv~~m~~ 34 (207)
|.|++......+..|...-+...|..||+++..
T Consensus 77 ~~f~L~~~~~~~~~~f~~Ktee~K~kWm~al~~ 109 (116)
T cd01223 77 YGFYLAHKQGKTGFTFYFKTEHLRKKWLKALEM 109 (116)
T ss_pred EEEEEEecCCCccEEEEeCCHHHHHHHHHHHHH
Confidence 444454444457778888899999999998765
No 13
>COG3952 Predicted membrane protein [Function unknown]
Probab=24.35 E-value=80 Score=24.50 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=18.9
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhc
Q 040661 162 SFPMLLWMFGPLPVALASVALVWGLYELDFA 192 (207)
Q Consensus 162 al~ll~W~~gP~~~~~~t~~~V~vLy~~df~ 192 (207)
.+|.+.|.++ ++.+.+.++..+.+.|-.
T Consensus 55 v~P~~FW~~s---llGg~l~L~Yfi~~~DpV 82 (113)
T COG3952 55 VIPVLFWYFS---LLGGLLLLSYFIRRQDPV 82 (113)
T ss_pred cchHHHHHHH---HHhhHHHHHHHHHhcchH
Confidence 3678888877 455666677777776653
No 14
>COG4818 Predicted membrane protein [Function unknown]
Probab=22.65 E-value=1.6e+02 Score=22.53 Aligned_cols=34 Identities=15% Similarity=0.203 Sum_probs=26.3
Q ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHhcCcc
Q 040661 162 SFPMLLWMFGPLPVALASVALVWGLYELDFAGKS 195 (207)
Q Consensus 162 al~ll~W~~gP~~~~~~t~~~V~vLy~~df~S~~ 195 (207)
.+|...|++.+...+.+-++.....|.--..++|
T Consensus 54 ~iP~Ig~lls~~v~l~a~iLwlv~mykAyrGe~f 87 (105)
T COG4818 54 FIPYIGWLLSGLVGLAAFILWLVCMYKAYRGERF 87 (105)
T ss_pred HhhhhHHHHHhHHHHHHHHHHHHHHHHHHcCCee
Confidence 4788899999999988877777777766555544
No 15
>PF14017 DUF4233: Protein of unknown function (DUF4233)
Probab=21.98 E-value=1.3e+02 Score=23.11 Aligned_cols=38 Identities=13% Similarity=0.081 Sum_probs=28.7
Q ss_pred HHHHHhHhhHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 040661 164 PMLLWMFGPLPVALASVALVWGLYELDFAGKSTRRESN 201 (207)
Q Consensus 164 ~ll~W~~gP~~~~~~t~~~V~vLy~~df~S~~~~~~~~ 201 (207)
.++.++++|..+++.-+-.....|-.-...+.+|++++
T Consensus 69 ~i~~g~v~p~m~vvG~iF~~~W~~~l~lg~~i~~~~~~ 106 (107)
T PF14017_consen 69 LIAGGFVHPAMFVVGVIFAAVWWYALYLGRRIDRRMAR 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67788999999888887777777766666666776653
No 16
>PRK14406 membrane protein; Provisional
Probab=21.60 E-value=2.6e+02 Score=23.71 Aligned_cols=17 Identities=12% Similarity=0.171 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhccccc
Q 040661 63 LITLAMGALMNNAYKGS 79 (207)
Q Consensus 63 ll~~gl~all~~~~~~~ 79 (207)
..+.|+.+++|...+..
T Consensus 77 ~~l~~laavlGH~fPi~ 93 (199)
T PRK14406 77 MLMAGAMAVFGHCYSIF 93 (199)
T ss_pred HHHHHHHHHHccCChHH
Confidence 35678888988888753
No 17
>PF10617 DUF2474: Protein of unknown function (DUF2474); InterPro: IPR018895 This family of short proteins has no known function.
Probab=21.20 E-value=2.1e+02 Score=18.30 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=19.6
Q ss_pred HHHhHhhHHHHHHHHHHHHHHHHH
Q 040661 166 LLWMFGPLPVALASVALVWGLYEL 189 (207)
Q Consensus 166 l~W~~gP~~~~~~t~~~V~vLy~~ 189 (207)
++||++=|..-+.++.+|..+.|.
T Consensus 8 l~W~v~iW~~SV~aL~~va~~~Rl 31 (40)
T PF10617_consen 8 LGWFVLIWAASVLALGVVAMLFRL 31 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 679999888888888888887765
Done!