Query 040661
Match_columns 207
No_of_seqs 107 out of 273
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 17:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040661.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040661hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2knc_A Integrin alpha-IIB; tra 14.7 1.6E+02 0.0054 19.0 3.2 16 179-194 26-41 (54)
2 2l8s_A Integrin alpha-1; trans 13.1 1.5E+02 0.005 19.2 2.7 16 179-194 23-38 (54)
3 2k1a_A Integrin alpha-IIB; sin 10.9 2E+02 0.0067 17.5 2.6 14 180-193 25-38 (42)
4 3h3g_B Parathyroid hormone-rel 10.8 1.3E+02 0.0043 16.4 1.5 16 20-35 4-19 (24)
5 2k1k_A Ephrin type-A receptor 10.1 1.9E+02 0.0064 17.1 2.3 20 170-189 18-37 (38)
6 1et1_A Parathyroid hormone; he 9.3 1.7E+02 0.0059 17.2 1.8 15 21-35 16-30 (34)
7 1bwx_A Parathyroid hormone; pe 8.8 1.3E+02 0.0043 18.3 1.1 13 23-35 18-30 (39)
8 1kf6_C Fumarate reductase 15 k 7.7 6.3E+02 0.022 19.0 4.9 64 53-120 31-94 (130)
9 2yiu_B Cytochrome C1, heme pro 5.0 7.3E+02 0.025 20.8 4.4 27 174-200 235-261 (263)
10 2qjy_B Cytochrome C1; cytochro 4.9 6.3E+02 0.022 21.3 3.9 30 174-203 234-263 (269)
No 1
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=14.72 E-value=1.6e+02 Score=19.03 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCc
Q 040661 179 SVALVWGLYELDFAGK 194 (207)
Q Consensus 179 t~~~V~vLy~~df~S~ 194 (207)
-.+++.+||+..|..+
T Consensus 26 L~li~~~LwK~GFFkR 41 (54)
T 2knc_A 26 LTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHcCcccC
Confidence 3467889999998753
No 2
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=13.10 E-value=1.5e+02 Score=19.22 Aligned_cols=16 Identities=19% Similarity=0.495 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCc
Q 040661 179 SVALVWGLYELDFAGK 194 (207)
Q Consensus 179 t~~~V~vLy~~df~S~ 194 (207)
-.+++.+||+..|..+
T Consensus 23 L~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 23 LMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCcccC
Confidence 3467889999999853
No 3
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=10.91 E-value=2e+02 Score=17.54 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHhcC
Q 040661 180 VALVWGLYELDFAG 193 (207)
Q Consensus 180 ~~~V~vLy~~df~S 193 (207)
.+++.+||+..|..
T Consensus 25 ~li~~~LwK~GFFk 38 (42)
T 2k1a_A 25 TILVLAMWKVGFFK 38 (42)
T ss_dssp HHHHHHHHHTTTTC
T ss_pred HHHHHHHHHcCccc
Confidence 45778899988873
No 4
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=10.82 E-value=1.3e+02 Score=16.40 Aligned_cols=16 Identities=31% Similarity=0.688 Sum_probs=12.3
Q ss_pred HHhhhHHHHHHHHhcc
Q 040661 20 IDALRRKFWFQGIKEG 35 (207)
Q Consensus 20 ~~~~~R~~Wv~~m~~r 35 (207)
+..-.|+-|.+++|++
T Consensus 4 ~Q~~rRr~wL~~ll~~ 19 (24)
T 3h3g_B 4 IQDLRRRFFLHHLIAE 19 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3445799999999874
No 5
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=10.06 E-value=1.9e+02 Score=17.11 Aligned_cols=20 Identities=20% Similarity=0.016 Sum_probs=9.6
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 040661 170 FGPLPVALASVALVWGLYEL 189 (207)
Q Consensus 170 ~gP~~~~~~t~~~V~vLy~~ 189 (207)
+|++..++...++++.+|||
T Consensus 18 vG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 18 FGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHeec
Confidence 44554444444445555543
No 6
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=9.26 E-value=1.7e+02 Score=17.16 Aligned_cols=15 Identities=13% Similarity=0.441 Sum_probs=11.4
Q ss_pred HhhhHHHHHHHHhcc
Q 040661 21 DALRRKFWFQGIKEG 35 (207)
Q Consensus 21 ~~~~R~~Wv~~m~~r 35 (207)
....|+.|.+..+++
T Consensus 16 q~~~R~~WLq~~l~~ 30 (34)
T 1et1_A 16 NSMERVEWLRKKLQD 30 (34)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 445799999988763
No 7
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=8.76 E-value=1.3e+02 Score=18.31 Aligned_cols=13 Identities=15% Similarity=0.424 Sum_probs=10.6
Q ss_pred hhHHHHHHHHhcc
Q 040661 23 LRRKFWFQGIKEG 35 (207)
Q Consensus 23 ~~R~~Wv~~m~~r 35 (207)
..|+.|.+..+++
T Consensus 18 ~~R~~WLq~~L~~ 30 (39)
T 1bwx_A 18 MERVEWLRKKLQD 30 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4699999988874
No 8
>1kf6_C Fumarate reductase 15 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_C* 1l0v_C* 2b76_C* 3cir_C* 3p4p_C* 3p4q_C* 3p4r_C* 3p4s_C*
Probab=7.72 E-value=6.3e+02 Score=19.04 Aligned_cols=64 Identities=16% Similarity=0.035 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040661 53 ATILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQSGRIFALKYGSASIFLLVSFFCSSVALGFL 120 (207)
Q Consensus 53 ~~tf~ASTsill~~gl~all~~~~~~~~~~~~~~~~~~~~~~~~lK~~~ll~~f~~aFf~f~~s~R~~ 120 (207)
++-+.+=-|+.++-|++++-+..+.-... ..| -+++..+.+.++.|+..++.+.--|..+=+-.
T Consensus 31 T~v~~~wf~l~Ll~Gl~~L~~G~~aw~~f---v~f-l~nPivvilniiaLaa~L~Ha~TwF~l~Pka~ 94 (130)
T 1kf6_C 31 TAVPAVWFSIELIFGLFALKNGPEAWAGF---VDF-LQNPVIVIINLITLAAALLHTKTWFELAPKAA 94 (130)
T ss_dssp THHHHHHHHHHHHHHHHHHHTHHHHHHHH---HHH-HTSSHHHHHHHHHHHHHHHHHHHHHHHGGGGC
T ss_pred hHHHHHHHHHHHHHHHHHHhcChHHHHHH---HHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHcchhh
Confidence 35566777899999999987754431111 112 25667889999999999999887777654433
No 9
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=5.04 E-value=7.3e+02 Score=20.83 Aligned_cols=27 Identities=11% Similarity=-0.022 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccccc
Q 040661 174 PVALASVALVWGLYELDFAGKSTRRES 200 (207)
Q Consensus 174 ~~~~~t~~~V~vLy~~df~S~~~~~~~ 200 (207)
.+++..+.++..+++|+..++...+++
T Consensus 235 l~fL~il~~l~y~~kr~~W~~vk~~~~ 261 (263)
T 2yiu_B 235 VIFLIVLAALLYLTNKKLWQPIKHPRK 261 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 344555566667778888888766554
No 10
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=4.94 E-value=6.3e+02 Score=21.30 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccc
Q 040661 174 PVALASVALVWGLYELDFAGKSTRRESNLV 203 (207)
Q Consensus 174 ~~~~~t~~~V~vLy~~df~S~~~~~~~~~~ 203 (207)
.++++.+.++..+++|+.-++...+++-+|
T Consensus 234 l~fL~il~~l~y~~kr~~W~~vk~~~~~~~ 263 (269)
T 2qjy_B 234 VMFLTVLSVLLYLTNKRLWAGVKGKKKTNV 263 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHhhhccccceecc
Confidence 445555566666778888877766655443
Done!