Query 040661
Match_columns 207
No_of_seqs 107 out of 273
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 17:03:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040661.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040661hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1txda2 b.55.1.1 (A:1020-1133) 19.0 10 0.00073 25.6 -0.3 32 3-34 78-110 (114)
2 d1jb0i_ f.23.17.1 (I:) Subunit 13.2 38 0.0028 18.9 1.3 15 164-178 8-22 (38)
3 d2dfka2 b.55.1.1 (A:240-401) R 7.9 39 0.0028 23.6 -0.1 20 15-34 111-130 (162)
4 d1kf6c_ f.21.2.2 (C:) Fumarate 7.5 3.1E+02 0.023 18.9 4.9 61 54-118 32-92 (130)
5 d2axtj1 f.23.32.1 (J:7-40) Pho 6.7 2.1E+02 0.015 15.3 3.4 12 167-178 4-15 (34)
6 d1wi1a_ b.55.1.1 (A:) Calcium- 5.2 1.2E+02 0.0088 19.2 1.4 19 16-34 89-107 (126)
7 d1kyqa2 e.37.1.1 (A:151-273) B 4.8 1.4E+02 0.01 20.5 1.5 15 22-36 67-81 (123)
8 d1st6a6 a.24.9.1 (A:647-718) V 4.3 2.7E+02 0.02 17.2 2.6 24 10-33 37-61 (72)
9 d2p0ta1 a.290.1.1 (A:22-169) U 4.3 1.7E+02 0.013 20.5 1.8 31 25-55 84-122 (148)
10 d1qqga1 b.55.1.2 (A:12-114) In 4.2 1.6E+02 0.012 17.8 1.4 19 16-34 83-101 (103)
No 1
>d1txda2 b.55.1.1 (A:1020-1133) Rho guanine nucleotide exchange factor 12 {Human (Homo sapiens), gamma isoform [TaxId: 9606]}
Probab=18.98 E-value=10 Score=25.62 Aligned_cols=32 Identities=6% Similarity=-0.016 Sum_probs=21.6
Q ss_pred eeehhhhccCCCc-cHhhHHhhhHHHHHHHHhc
Q 040661 3 ANLWHSFKTKPLH-TSIGIDALRRKFWFQGIKE 34 (207)
Q Consensus 3 ~~l~~~~~~~p~~-t~~~~~~~~R~~Wv~~m~~ 34 (207)
.|+.+...+.+.. ++..-....|+.||+++-+
T Consensus 78 ~fli~~~~~~~~~y~l~A~s~~eK~~W~~~I~~ 110 (114)
T d1txda2 78 LFVISMSDNGAQIYELVAQTVSEKTVWQDLICR 110 (114)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEecCCCceEEEEEcCCHHHHHHHHHHHHH
Confidence 3455444444333 7778888999999998764
No 2
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=13.20 E-value=38 Score=18.86 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=8.1
Q ss_pred HHHHHhHhhHHHHHH
Q 040661 164 PMLLWMFGPLPVALA 178 (207)
Q Consensus 164 ~ll~W~~gP~~~~~~ 178 (207)
.++-|++-|+.-.+.
T Consensus 8 syLPwI~iPvv~wl~ 22 (38)
T d1jb0i_ 8 SFLPWIFIPVVCWLM 22 (38)
T ss_dssp TTHHHHHHHHHHTHH
T ss_pred HhcchhHHHHHHHHH
Confidence 345566666654443
No 3
>d2dfka2 b.55.1.1 (A:240-401) Rho guanine nucleotide exchange factor 9, Collybistin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=7.85 E-value=39 Score=23.62 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=16.5
Q ss_pred ccHhhHHhhhHHHHHHHHhc
Q 040661 15 HTSIGIDALRRKFWFQGIKE 34 (207)
Q Consensus 15 ~t~~~~~~~~R~~Wv~~m~~ 34 (207)
.++..-....|..||+++.+
T Consensus 111 ~~~~A~s~~eK~~W~~~l~~ 130 (162)
T d2dfka2 111 HLFFAKKLEEKIRWLRAFRE 130 (162)
T ss_dssp EEEECSSHHHHHHHHHHHHH
T ss_pred EEEEeCCHHHHHHHHHHHHH
Confidence 36677788999999998875
No 4
>d1kf6c_ f.21.2.2 (C:) Fumarate reductase subunit FrdC {Escherichia coli [TaxId: 562]}
Probab=7.51 E-value=3.1e+02 Score=18.95 Aligned_cols=61 Identities=16% Similarity=0.053 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccccccccccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040661 54 TILTAQIAILITLAMGALMNNAYKGSHIFNSAIFGSQSGRIFALKYGSASIFLLVSFFCSSVALG 118 (207)
Q Consensus 54 ~tf~ASTsill~~gl~all~~~~~~~~~~~~~~~~~~~~~~~~lK~~~ll~~f~~aFf~f~~s~R 118 (207)
+-+.+=-++.++-|++++....+.-... ..| -+++..+-+.++.|+..+..+.--|.++=+
T Consensus 32 ~v~~~~f~lvLl~Gl~~L~~g~~aw~~f---v~f-lqnP~vv~lniiaLaa~L~Ha~TwF~l~Pk 92 (130)
T d1kf6c_ 32 AVPAVWFSIELIFGLFALKNGPEAWAGF---VDF-LQNPVIVIINLITLAAALLHTKTWFELAPK 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHH---HHH-HTSSHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4556667889999999997776652211 112 256678889999999999988887776544
No 5
>d2axtj1 f.23.32.1 (J:7-40) Photosystem II reaction center protein J, PsbJ {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=6.67 E-value=2.1e+02 Score=15.27 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=8.3
Q ss_pred HHhHhhHHHHHH
Q 040661 167 LWMFGPLPVALA 178 (207)
Q Consensus 167 ~W~~gP~~~~~~ 178 (207)
+|+++.+.-+.+
T Consensus 4 LWlv~tv~G~~v 15 (34)
T d2axtj1 4 LWIVATVAGMGV 15 (34)
T ss_dssp HHHHHHHHHHHH
T ss_pred EEEeeehhhhhh
Confidence 688887775544
No 6
>d1wi1a_ b.55.1.1 (A:) Calcium-dependent activator protein for secretion, CAPS {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.18 E-value=1.2e+02 Score=19.18 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.4
Q ss_pred cHhhHHhhhHHHHHHHHhc
Q 040661 16 TSIGIDALRRKFWFQGIKE 34 (207)
Q Consensus 16 t~~~~~~~~R~~Wv~~m~~ 34 (207)
.+.+-..+.|.+||+.+.+
T Consensus 89 ~f~A~s~~e~~~Wv~al~~ 107 (126)
T d1wi1a_ 89 IFASDDEQDRILWVQAMYR 107 (126)
T ss_dssp EEECSSHHHHHHHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHH
Confidence 5567788999999998864
No 7
>d1kyqa2 e.37.1.1 (A:151-273) Bifunctional dehydrogenase/ferrochelatase Met8p, dimerisation and C-terminal domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.82 E-value=1.4e+02 Score=20.46 Aligned_cols=15 Identities=13% Similarity=0.007 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHhccC
Q 040661 22 ALRRKFWFQGIKEGD 36 (207)
Q Consensus 22 ~~~R~~Wv~~m~~r~ 36 (207)
...|..|++++.+--
T Consensus 67 ~~~Rm~W~~qi~e~~ 81 (123)
T d1kyqa2 67 VKYRMDWARRCTDLF 81 (123)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHH
Confidence 357999999988643
No 8
>d1st6a6 a.24.9.1 (A:647-718) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=4.30 E-value=2.7e+02 Score=17.17 Aligned_cols=24 Identities=8% Similarity=0.212 Sum_probs=17.6
Q ss_pred ccCCCc-cHhhHHhhhHHHHHHHHh
Q 040661 10 KTKPLH-TSIGIDALRRKFWFQGIK 33 (207)
Q Consensus 10 ~~~p~~-t~~~~~~~~R~~Wv~~m~ 33 (207)
..+|.. ...--+...|++|.+++-
T Consensus 37 ~~~P~sK~a~En~e~~~~~W~~~v~ 61 (72)
T d1st6a6 37 LRNPGNQAAYEHFETMKNQWIDNVE 61 (72)
T ss_dssp TTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHHHHHH
Confidence 356765 556677889999988764
No 9
>d2p0ta1 a.290.1.1 (A:22-169) Uncharacterized protein PSPTO4464 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=4.29 E-value=1.7e+02 Score=20.46 Aligned_cols=31 Identities=23% Similarity=0.291 Sum_probs=22.1
Q ss_pred HHHHHHHHhccCCc--c------chhHHHHHHHHHHHHH
Q 040661 25 RKFWFQGIKEGDDK--K------GMLAVQSLRNTLMATI 55 (207)
Q Consensus 25 R~~Wv~~m~~r~~~--~------~ilavqtLrn~~~~~t 55 (207)
=+.|-++++..++. + .-.|.|.||++++.+.
T Consensus 84 lE~wRdrLi~~~~~al~e~~~~~P~~DrQ~LRqLiR~A~ 122 (148)
T d2p0ta1 84 LERWRDRLIAGDDADLEKFVIEYPDADRQQLRSLIRQAQ 122 (148)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHCcchHHHHHHHHHHHHH
Confidence 46799999976531 0 2468999999998753
No 10
>d1qqga1 b.55.1.2 (A:12-114) Insulin receptor substrate 1, IRS-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.20 E-value=1.6e+02 Score=17.79 Aligned_cols=19 Identities=11% Similarity=0.326 Sum_probs=13.6
Q ss_pred cHhhHHhhhHHHHHHHHhc
Q 040661 16 TSIGIDALRRKFWFQGIKE 34 (207)
Q Consensus 16 t~~~~~~~~R~~Wv~~m~~ 34 (207)
.+..-..+.|++|++.+-+
T Consensus 83 ~l~A~s~~e~~~Wi~al~~ 101 (103)
T d1qqga1 83 AIAADSEAEQDSWYQALLQ 101 (103)
T ss_dssp EEECSSHHHHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHHHh
Confidence 3445567889999997753
Done!