Query 040662
Match_columns 365
No_of_seqs 207 out of 1681
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 10:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040662.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040662hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03215 ascorbic acid mannose 100.0 6.4E-36 1.4E-40 273.1 26.5 277 15-322 2-353 (373)
2 TIGR01640 F_box_assoc_1 F-box 99.8 1.6E-19 3.4E-24 159.7 18.3 206 98-316 1-229 (230)
3 PHA02713 hypothetical protein; 99.3 6.4E-10 1.4E-14 110.4 20.9 234 70-324 275-542 (557)
4 KOG4441 Proteins containing BT 99.0 1.7E-08 3.7E-13 100.1 19.3 234 70-324 304-555 (571)
5 PF03478 DUF295: Protein of un 99.0 1.1E-09 2.3E-14 73.0 4.8 43 272-314 1-54 (54)
6 PF12937 F-box-like: F-box-lik 98.9 2.3E-09 5E-14 69.4 3.6 38 17-54 1-38 (47)
7 PHA02790 Kelch-like protein; P 98.8 4.1E-07 8.8E-12 89.1 19.5 185 70-275 290-477 (480)
8 PHA03098 kelch-like protein; P 98.8 8.1E-07 1.8E-11 88.4 21.1 208 101-322 293-518 (534)
9 PHA02713 hypothetical protein; 98.8 4.2E-07 9.1E-12 90.5 18.5 192 70-278 323-543 (557)
10 PHA02790 Kelch-like protein; P 98.7 1.9E-06 4E-11 84.5 19.5 196 101-320 270-475 (480)
11 PHA03098 kelch-like protein; P 98.7 1.9E-06 4.1E-11 85.8 19.8 197 69-280 313-523 (534)
12 KOG4441 Proteins containing BT 98.7 9.7E-07 2.1E-11 87.8 17.2 193 70-278 352-556 (571)
13 PF08268 FBA_3: F-box associat 98.6 1.8E-07 3.9E-12 74.7 8.6 78 198-277 1-89 (129)
14 PF00646 F-box: F-box domain; 98.6 1.4E-08 3.1E-13 66.0 1.1 39 16-54 2-40 (48)
15 PLN02153 epithiospecifier prot 98.6 2.4E-05 5.2E-10 73.3 23.2 211 98-323 28-292 (341)
16 smart00256 FBOX A Receptor for 98.5 6.3E-08 1.4E-12 60.5 2.8 35 20-54 1-35 (41)
17 PLN02193 nitrile-specifier pro 98.5 2.8E-05 6.1E-10 76.0 21.2 244 70-323 140-418 (470)
18 PLN02153 epithiospecifier prot 98.5 4.5E-05 9.7E-10 71.5 21.7 198 69-279 52-295 (341)
19 TIGR03547 muta_rot_YjhT mutatr 98.5 7.2E-05 1.6E-09 70.2 23.0 168 100-280 15-239 (346)
20 PLN02193 nitrile-specifier pro 98.4 4.8E-05 1E-09 74.4 19.4 199 69-280 195-422 (470)
21 PRK14131 N-acetylneuraminic ac 98.3 0.00015 3.2E-09 69.0 20.8 191 99-304 35-287 (376)
22 TIGR03548 mutarot_permut cycli 98.3 9.6E-05 2.1E-09 68.7 18.6 151 121-279 39-205 (323)
23 TIGR03548 mutarot_permut cycli 98.2 0.00016 3.5E-09 67.2 18.1 171 70-254 91-312 (323)
24 PF07734 FBA_1: F-box associat 98.0 2.7E-05 5.9E-10 64.9 8.7 80 198-279 1-94 (164)
25 TIGR03547 muta_rot_YjhT mutatr 97.9 0.0025 5.4E-08 59.8 20.7 218 70-304 32-329 (346)
26 PRK14131 N-acetylneuraminic ac 97.3 0.016 3.5E-07 55.1 17.3 193 70-273 109-373 (376)
27 KOG2120 SCF ubiquitin ligase, 97.1 0.00027 5.9E-09 62.8 2.6 39 16-54 97-135 (419)
28 KOG1230 Protein containing rep 95.8 0.13 2.9E-06 47.9 11.0 114 197-323 80-223 (521)
29 COG4257 Vgb Streptogramin lyas 95.7 0.29 6.4E-06 43.4 12.3 122 96-234 193-318 (353)
30 KOG4693 Uncharacterized conser 95.7 0.071 1.5E-06 46.8 8.4 166 102-277 88-285 (392)
31 KOG0379 Kelch repeat-containin 95.6 0.4 8.7E-06 47.1 14.7 150 121-279 139-312 (482)
32 KOG4693 Uncharacterized conser 95.5 0.43 9.2E-06 42.1 12.5 151 120-275 43-231 (392)
33 KOG0379 Kelch repeat-containin 94.0 1.5 3.2E-05 43.2 13.8 150 122-279 89-260 (482)
34 KOG1230 Protein containing rep 93.7 1.5 3.2E-05 41.3 12.1 108 170-277 97-224 (521)
35 KOG0281 Beta-TrCP (transducin 92.3 0.099 2.2E-06 47.5 2.5 37 18-54 76-116 (499)
36 PF07646 Kelch_2: Kelch motif; 92.2 0.28 6.1E-06 31.4 3.9 39 241-279 7-49 (49)
37 KOG2997 F-box protein FBX9 [Ge 91.8 0.089 1.9E-06 47.4 1.6 37 18-54 108-149 (366)
38 PF13964 Kelch_6: Kelch motif 90.4 0.54 1.2E-05 30.1 3.9 40 240-279 6-47 (50)
39 PF01344 Kelch_1: Kelch motif; 89.5 0.99 2.2E-05 28.3 4.6 41 239-279 5-47 (47)
40 PF13964 Kelch_6: Kelch motif 82.7 4.1 9E-05 25.9 4.9 39 100-140 9-47 (50)
41 KOG4341 F-box protein containi 82.0 1.2 2.6E-05 42.0 2.9 40 14-54 70-109 (483)
42 PF13360 PQQ_2: PQQ-like domai 80.8 36 0.00077 29.3 19.7 207 69-319 5-234 (238)
43 PF06433 Me-amine-dh_H: Methyl 80.7 49 0.0011 30.8 13.3 118 195-320 186-325 (342)
44 PF13570 PQQ_3: PQQ-like domai 80.2 3.7 8E-05 24.8 3.8 25 195-221 14-39 (40)
45 KOG2502 Tub family proteins [G 78.7 1.2 2.6E-05 40.9 1.7 40 15-54 43-90 (355)
46 PF07646 Kelch_2: Kelch motif; 77.6 7.4 0.00016 24.6 4.8 34 195-230 4-47 (49)
47 KOG0274 Cdc4 and related F-box 75.7 1.1 2.3E-05 44.7 0.6 38 17-54 108-145 (537)
48 PF01344 Kelch_1: Kelch motif; 75.2 5.7 0.00012 24.6 3.8 33 195-229 4-44 (47)
49 PF07893 DUF1668: Protein of u 74.9 69 0.0015 30.0 12.4 117 97-228 71-214 (342)
50 PF13418 Kelch_4: Galactose ox 74.4 3.9 8.5E-05 25.8 2.9 35 245-279 12-48 (49)
51 PF13859 BNR_3: BNR repeat-lik 70.1 18 0.00038 33.4 7.1 61 218-279 154-217 (310)
52 smart00564 PQQ beta-propeller 70.1 10 0.00023 21.3 3.8 24 198-223 2-26 (33)
53 TIGR03032 conserved hypothetic 65.5 59 0.0013 29.9 9.2 55 195-255 205-261 (335)
54 PRK11138 outer membrane biogen 64.9 1.3E+02 0.0028 28.5 14.9 30 196-227 250-282 (394)
55 smart00612 Kelch Kelch domain. 63.8 11 0.00023 23.0 3.2 19 170-188 14-32 (47)
56 TIGR01640 F_box_assoc_1 F-box 62.0 94 0.002 26.8 10.0 111 200-320 3-131 (230)
57 PF13415 Kelch_3: Galactose ox 60.4 11 0.00024 23.8 2.8 34 246-279 2-38 (49)
58 PF13013 F-box-like_2: F-box-l 60.4 8.9 0.00019 29.3 2.7 29 17-45 22-50 (109)
59 PF02897 Peptidase_S9_N: Proly 59.7 1.6E+02 0.0035 28.0 20.5 143 171-323 252-412 (414)
60 PF14870 PSII_BNR: Photosynthe 59.3 1.5E+02 0.0032 27.3 12.2 98 173-278 168-271 (302)
61 KOG0294 WD40 repeat-containing 59.1 1.5E+02 0.0032 27.3 12.1 133 121-270 149-285 (362)
62 PF08450 SGL: SMP-30/Gluconola 56.6 1.3E+02 0.0029 26.1 13.9 92 171-268 22-123 (246)
63 TIGR03300 assembly_YfgL outer 54.8 1.9E+02 0.004 27.1 18.0 98 102-227 65-171 (377)
64 COG3055 Uncharacterized protei 54.6 64 0.0014 30.1 7.5 18 171-188 113-130 (381)
65 PF09372 PRANC: PRANC domain; 53.6 10 0.00022 28.2 2.0 25 15-39 70-94 (97)
66 PF07762 DUF1618: Protein of u 53.2 1.1E+02 0.0023 23.9 8.3 70 210-279 2-97 (131)
67 PF10282 Lactonase: Lactonase, 52.8 2E+02 0.0042 26.8 17.8 156 101-276 154-332 (345)
68 PTZ00334 trans-sialidase; Prov 51.2 50 0.0011 34.4 7.0 56 218-274 292-348 (780)
69 KOG0289 mRNA splicing factor [ 49.9 2.5E+02 0.0053 27.1 11.3 81 195-282 392-476 (506)
70 PRK11138 outer membrane biogen 48.8 2.4E+02 0.0052 26.7 12.2 23 102-133 256-278 (394)
71 PF10282 Lactonase: Lactonase, 42.4 2.8E+02 0.0062 25.7 11.6 88 177-267 21-118 (345)
72 TIGR03300 assembly_YfgL outer 41.1 3E+02 0.0066 25.7 16.0 49 172-227 252-305 (377)
73 COG2706 3-carboxymuconate cycl 40.8 3.1E+02 0.0067 25.6 14.8 128 195-325 42-185 (346)
74 COG4946 Uncharacterized protei 38.0 4E+02 0.0087 26.2 19.8 136 121-271 287-434 (668)
75 COG3055 Uncharacterized protei 35.4 2E+02 0.0043 27.0 7.6 81 197-278 41-131 (381)
76 PF01011 PQQ: PQQ enzyme repea 34.4 72 0.0016 18.8 3.3 19 203-223 1-20 (38)
77 PF03055 RPE65: Retinal pigmen 34.3 2.8E+02 0.0061 27.3 9.3 73 195-269 123-204 (486)
78 PF14870 PSII_BNR: Photosynthe 33.4 2.7E+02 0.0058 25.6 8.3 92 178-276 44-140 (302)
79 KOG0321 WD40 repeat-containing 33.4 1.7E+02 0.0036 29.7 7.1 62 203-267 65-131 (720)
80 PF02191 OLF: Olfactomedin-lik 33.0 3.5E+02 0.0077 24.0 10.3 74 195-269 71-157 (250)
81 PF07893 DUF1668: Protein of u 32.9 4.1E+02 0.0089 24.8 11.2 120 201-327 75-219 (342)
82 COG4257 Vgb Streptogramin lyas 32.5 3.9E+02 0.0084 24.4 17.3 211 72-319 88-309 (353)
83 cd00260 Sialidase Sialidases o 31.5 1.7E+02 0.0037 27.1 7.0 62 219-280 180-243 (351)
84 PF03178 CPSF_A: CPSF A subuni 30.0 4.3E+02 0.0093 24.1 15.7 147 121-276 2-167 (321)
85 COG4946 Uncharacterized protei 29.5 5.6E+02 0.012 25.2 15.4 139 67-228 287-438 (668)
86 PF08450 SGL: SMP-30/Gluconola 29.5 3.7E+02 0.0081 23.2 21.0 198 70-303 25-244 (246)
87 PLN02772 guanylate kinase 28.7 3E+02 0.0065 26.4 7.9 70 195-268 27-108 (398)
88 PLN00033 photosystem II stabil 28.3 5.4E+02 0.012 24.7 10.6 89 180-277 269-365 (398)
89 PRK13684 Ycf48-like protein; P 27.8 4.7E+02 0.01 24.3 9.2 56 175-232 111-171 (334)
90 smart00284 OLF Olfactomedin-li 27.4 4.5E+02 0.0098 23.5 9.9 74 195-269 76-162 (255)
91 PF05528 Coronavirus_5: Corona 26.7 38 0.00083 23.3 1.2 12 315-326 33-44 (82)
92 PHA00407 phage lambda Rz1-like 26.2 35 0.00077 23.9 1.0 29 25-53 9-37 (84)
93 KOG3926 F-box proteins [Amino 26.2 58 0.0013 29.1 2.5 31 14-44 199-230 (332)
94 PRK04792 tolB translocation pr 26.1 6.1E+02 0.013 24.6 18.7 165 121-304 242-412 (448)
95 PLN02969 9-cis-epoxycarotenoid 25.8 2.8E+02 0.0061 28.3 7.7 25 196-222 182-207 (610)
96 PF12768 Rax2: Cortical protei 25.4 5.1E+02 0.011 23.5 10.5 106 170-280 15-135 (281)
97 TIGR03075 PQQ_enz_alc_DH PQQ-d 24.8 2.6E+02 0.0056 27.9 7.2 30 196-227 63-95 (527)
98 PF09910 DUF2139: Uncharacteri 23.7 5.8E+02 0.013 23.5 9.7 66 210-276 74-147 (339)
99 PF13919 ASXH: Asx homology do 21.2 63 0.0014 25.8 1.7 43 13-55 40-102 (138)
100 PLN00033 photosystem II stabil 20.8 7.5E+02 0.016 23.7 15.1 91 178-275 117-214 (398)
101 KOG0293 WD40 repeat-containing 20.2 7.9E+02 0.017 23.7 13.3 176 121-320 291-486 (519)
102 PRK11028 6-phosphogluconolacto 20.2 6.6E+02 0.014 22.8 16.8 94 171-268 12-112 (330)
103 PLN02258 9-cis-epoxycarotenoid 20.1 6.4E+02 0.014 25.7 8.9 73 195-269 240-321 (590)
No 1
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=100.00 E-value=6.4e-36 Score=273.06 Aligned_cols=277 Identities=17% Similarity=0.234 Sum_probs=185.8
Q ss_pred CCCCCChHHHHHHHHhcCCh-hhhhhhhhcchhhHHhhccC-----CCCCceEEEee---CC-----ceEEEcC----CC
Q 040662 15 GSWSDLPLEIINSIVSRLYV-VYQIRFRAVCKRWRAADIQS-----RDKFPWLMGYN---SH-----SCYLYDP----CH 76 (365)
Q Consensus 15 ~~w~~LP~Dll~~Il~rLp~-~~l~r~r~VCk~Wrs~~~~~-----~~~~P~ll~~~---~~-----~~~~~~~----~~ 76 (365)
++|++||+|||..|..|||. .|++|||+|||+||+++... .++.||+++.+ .. +|.+-.+ +.
T Consensus 2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~ 81 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVGKKNPFRTRPLILFNPINPSETLTDDRSYISRPGAFLSR 81 (373)
T ss_pred CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccccccCCcccccccccCcccCCCCccccccccccccceeee
Confidence 57999999999999999986 89999999999999998863 14557776543 10 0100000 00
Q ss_pred CceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc----ccce---e-EEE
Q 040662 77 KQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR----EFSI---A-KAT 148 (365)
Q Consensus 77 ~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~----~~~~---~-~~~ 148 (365)
...+++++ + .++++|||+-.++.. ..+.+.|.||+++..+.+|+.. ++.+ . ...
T Consensus 82 ~~~~r~~~-----~-------~~~~~~WLik~~~~~------~~~~~~Ll~PLsr~~~~~~~~~lnll~f~v~ei~~~y~ 143 (373)
T PLN03215 82 AAFFRVTL-----S-------SSPSKGWLIKSDMDV------NSGRFHLLNPLSRLPLRHSSESVDLLEFTVSEIREAYQ 143 (373)
T ss_pred eEEEEeec-----C-------CCCCCCcEEEEeccc------cCCccEecCccccCccCCCCccceeeeeEEEEccceEE
Confidence 01222221 1 135699999987651 2468999999999999888731 1111 0 001
Q ss_pred E-ecCC------------------CCC-CeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEE
Q 040662 149 F-SATP------------------ISP-DCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCS 208 (365)
Q Consensus 149 l-s~~p------------------~s~-~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~ 208 (365)
+ .... .++ ++.|++... ...+++++ +++|+.++.. ...+.|+++++|+||+
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~----~g~l~~w~--~~~Wt~l~~~--~~~~~DIi~~kGkfYA- 214 (373)
T PLN03215 144 VLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGR----DGKINYWD--GNVLKALKQM--GYHFSDIIVHKGQTYA- 214 (373)
T ss_pred EEecccccccccceeEEEEEEeecCCCcceEEEEEee----cCcEeeec--CCeeeEccCC--CceeeEEEEECCEEEE-
Confidence 1 1110 000 122221111 12344454 5899999742 3458999999999999
Q ss_pred ecCCCcEEE-EEecCCceeeeec----CC--CceeceeEEEEeCCcEEEEEEEcC---------------CCceEEEEee
Q 040662 209 FFSLEAIVA-YNVASQNLEILPY----PP--SILFMYKYLTEYDGSLLIFGKVVD---------------GSGYRVFTFN 266 (365)
Q Consensus 209 ~l~~~g~i~-~d~~~~~~~~i~~----p~--~~~~~~~~Lve~~G~L~lV~~~~~---------------~~~~~V~~ld 266 (365)
++..|.+. +|.+.+. +.+.. .+ .......||||+.|+|+||.+... ...++||++|
T Consensus 215 -vD~~G~l~~i~~~l~i-~~v~~~i~~~~~~g~~~~~~yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD 292 (373)
T PLN03215 215 -LDSIGIVYWINSDLEF-SRFGTSLDENITDGCWTGDRRFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFD 292 (373)
T ss_pred -EcCCCeEEEEecCCce-eeecceecccccCCcccCceeEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEc
Confidence 99999998 8854321 11111 11 112246899999999999998631 1469999999
Q ss_pred CCCCCeEEeccCCCeEEEeccCC------CCC-CCCCCeEEEeeeCCCceEEEEcCceeeeec
Q 040662 267 RSQMDWFEIESLDDRVLFTGASC------LWV-PVEKGSAFANTVHWFGRYSYIRDVCREFIR 322 (365)
Q Consensus 267 ~~~~~W~~v~~lg~~~lfvg~~~------~~~-~~~~n~IYf~~~~~~~~~vy~l~~~~~~~~ 322 (365)
.+.++|+++++|||+++|+|.++ .++ |+++|||||+++ +...||+|++|+..+.
T Consensus 293 ~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd--~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 293 DELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED--TMPKVFKLDNGNGSSI 353 (373)
T ss_pred CCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC--CcceEEECCCCCccce
Confidence 99999999999999999999873 455 789999999984 4567999999886654
No 2
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=99.84 E-value=1.6e-19 Score=159.68 Aligned_cols=206 Identities=17% Similarity=0.262 Sum_probs=139.3
Q ss_pred EEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCccc---c-eeEEEEecCCCCCCeEEEEEeC--CCcCeE
Q 040662 98 LDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREF---S-IAKATFSATPISPDCVVFVTWV--GIMEIS 171 (365)
Q Consensus 98 ~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~---~-~~~~~ls~~p~s~~~~v~v~~~--~~~~~~ 171 (365)
+|+|+||||+... ..++|+||+||+++.||+.... . ....+|++++.+++|+|+.... .+....
T Consensus 1 ~~sCnGLlc~~~~----------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~ 70 (230)
T TIGR01640 1 VVPCDGLICFSYG----------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQS 70 (230)
T ss_pred CcccceEEEEecC----------CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCc
Confidence 4789999988754 3799999999999999876321 1 1246789999888999984322 111346
Q ss_pred EEEEEecCCCceEEeeeeCC-ccceeeEEEECCEEEEEecCCCc------EEE-EEecCCcee-eeecCCCce--eceeE
Q 040662 172 CISICRPGDTTWTELRFQDN-YRYVKNLVCADGFLYCSFFSLEA------IVA-YNVASQNLE-ILPYPPSIL--FMYKY 240 (365)
Q Consensus 172 ~~~~~~~g~~~W~~~~~~~~-~~~~~~~v~~~G~lY~~~l~~~g------~i~-~d~~~~~~~-~i~~p~~~~--~~~~~ 240 (365)
.+++|++++++|+.+..+.. .......|++||.+|| +...+ .|+ ||+++++|+ .++.|.... .....
T Consensus 71 ~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw--~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~ 148 (230)
T TIGR01640 71 EHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYY--LAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS 148 (230)
T ss_pred cEEEEEeCCCCccccccCCCCccccCCeEEECCEEEE--EEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceE
Confidence 78999999999999874211 1122348999999988 86421 577 999999999 577665321 23467
Q ss_pred EEEeCCcEEEEEEEcCCCceEEEEeeCC-CCCeEEeccCCCeEEEeccCC-CCC-C-CCCCeEEEeeeCCCc--eEEEEc
Q 040662 241 LTEYDGSLLIFGKVVDGSGYRVFTFNRS-QMDWFEIESLDDRVLFTGASC-LWV-P-VEKGSAFANTVHWFG--RYSYIR 314 (365)
Q Consensus 241 Lve~~G~L~lV~~~~~~~~~~V~~ld~~-~~~W~~v~~lg~~~lfvg~~~-~~~-~-~~~n~IYf~~~~~~~--~~vy~l 314 (365)
|++.+|+|+++........++||.|++. .++|++..+++...+. +... ... + ..++.|++......+ ...|+.
T Consensus 149 L~~~~G~L~~v~~~~~~~~~~IWvl~d~~~~~W~k~~~i~~~~~~-~~~~~~~~~~~~~~g~I~~~~~~~~~~~~~~y~~ 227 (230)
T TIGR01640 149 LINYKGKLAVLKQKKDTNNFDLWVLNDAGKQEWSKLFTVPIPPLP-DLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNV 227 (230)
T ss_pred EEEECCEEEEEEecCCCCcEEEEEECCCCCCceeEEEEEcCcchh-hhhhheeEeEEeeCCEEEEEeCCCCceEEEEEec
Confidence 8999999999987654456999999864 4679998888632111 1000 001 2 256777776542222 346665
Q ss_pred Cc
Q 040662 315 DV 316 (365)
Q Consensus 315 ~~ 316 (365)
++
T Consensus 228 ~~ 229 (230)
T TIGR01640 228 GE 229 (230)
T ss_pred cC
Confidence 54
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.26 E-value=6.4e-10 Score=110.40 Aligned_cols=234 Identities=11% Similarity=0.056 Sum_probs=148.9
Q ss_pred EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce--eE
Q 040662 70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI--AK 146 (365)
Q Consensus 70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~--~~ 146 (365)
..||+..++|..+. + |........+..+|-|++..+... .......+..+||.++.|..+|+++..+. ..
T Consensus 275 ~~yd~~~~~W~~l~~m-----p~~r~~~~~a~l~~~IYviGG~~~--~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~ 347 (557)
T PHA02713 275 LVYNINTMEYSVISTI-----PNHIINYASAIVDNEIIIAGGYNF--NNPSLNKVYKINIENKIHVELPPMIKNRCRFSL 347 (557)
T ss_pred EEEeCCCCeEEECCCC-----CccccceEEEEECCEEEEEcCCCC--CCCccceEEEEECCCCeEeeCCCCcchhhceeE
Confidence 57999999999875 4 432222234455888887765310 01123568899999999999999843221 12
Q ss_pred EEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC------------
Q 040662 147 ATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE------------ 213 (365)
Q Consensus 147 ~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~------------ 213 (365)
+++ ++.+.++... +......++.|++.+++|+.++..........++.++|++|+ ++-.
T Consensus 348 ~~~------~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYv--iGG~~~~~~~~~~~~~ 419 (557)
T PHA02713 348 AVI------DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYI--IGGRTEHIDYTSVHHM 419 (557)
T ss_pred EEE------CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEE--EeCCCccccccccccc
Confidence 222 2333333221 111245789999999999998753222234466788999999 7531
Q ss_pred ------------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCC--ceEEEEeeCCC-CCeEEecc
Q 040662 214 ------------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGS--GYRVFTFNRSQ-MDWFEIES 277 (365)
Q Consensus 214 ------------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~--~~~V~~ld~~~-~~W~~v~~ 277 (365)
..+. ||+.+++|+.++ |++......-++..+|+|++++...+.. .-.|.+.|.++ .+|+.+..
T Consensus 420 ~~~~~~~~~~~~~~ve~YDP~td~W~~v~-~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~ 498 (557)
T PHA02713 420 NSIDMEEDTHSSNKVIRYDTVNNIWETLP-NFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT 498 (557)
T ss_pred ccccccccccccceEEEECCCCCeEeecC-CCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc
Confidence 2366 999999998776 3332223445677899999997653221 12477888888 79999999
Q ss_pred CCCeEEEeccCCCCCCCCCCeEEEeeeCCC--ceEEEEcCceeeeeccc
Q 040662 278 LDDRVLFTGASCLWVPVEKGSAFANTVHWF--GRYSYIRDVCREFIRKP 324 (365)
Q Consensus 278 lg~~~lfvg~~~~~~~~~~n~IYf~~~~~~--~~~vy~l~~~~~~~~~~ 324 (365)
|+..-...| ....+|+||.+...+. ....||.++++|+..+.
T Consensus 499 m~~~r~~~~-----~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 499 TESRLSALH-----TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred cCcccccce-----eEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 985332222 1247899999874221 13589999988886544
No 4
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.04 E-value=1.7e-08 Score=100.13 Aligned_cols=234 Identities=14% Similarity=0.103 Sum_probs=153.5
Q ss_pred EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccce--eE
Q 040662 70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSI--AK 146 (365)
Q Consensus 70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~--~~ 146 (365)
..|||..+.|..+. + |.-+....++..+|.|+...+.+. .......+..+||.+++|..+|++...+. ..
T Consensus 304 e~yd~~~~~w~~~a~m-----~~~r~~~~~~~~~~~lYv~GG~~~--~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v 376 (571)
T KOG4441|consen 304 ECYDPKTNEWSSLAPM-----PSPRCRVGVAVLNGKLYVVGGYDS--GSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGV 376 (571)
T ss_pred EEecCCcCcEeecCCC-----CcccccccEEEECCEEEEEccccC--CCcccceEEEecCCCCceeccCCccCcccccee
Confidence 68999999888764 4 432223334556888888877631 11124678999999999999999843321 22
Q ss_pred EEEecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCC----C---cEEE-
Q 040662 147 ATFSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL----E---AIVA- 217 (365)
Q Consensus 147 ~~ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~----~---g~i~- 217 (365)
+.+ .+.+.+|.. .+......++.|++.++.|+.............++.++|++|+ +.- . ..+.
T Consensus 377 ~~l------~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi--~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 377 AVL------DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYI--IGGGDGSSNCLNSVEC 448 (571)
T ss_pred EEE------CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEE--EcCcCCCccccceEEE
Confidence 222 234444433 2223556899999999999999854333456688899999999 764 1 2466
Q ss_pred EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC-CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCC
Q 040662 218 YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG-SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEK 296 (365)
Q Consensus 218 ~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~-~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~ 296 (365)
||+.+++|+.++ |+.......-+...+|.|+.|+...+. .--.|-..|.++.+|..+..|....-=+| .-..+
T Consensus 449 YDP~t~~W~~~~-~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g-----~~~~~ 522 (571)
T KOG4441|consen 449 YDPETNTWTLIA-PMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG-----VVVLG 522 (571)
T ss_pred EcCCCCceeecC-CcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc-----EEEEC
Confidence 999999998876 333222233356679999999877542 22337778889999999987763211001 12478
Q ss_pred CeEEEeeeCCCc-----eEEEEcCceeeeeccc
Q 040662 297 GSAFANTVHWFG-----RYSYIRDVCREFIRKP 324 (365)
Q Consensus 297 n~IYf~~~~~~~-----~~vy~l~~~~~~~~~~ 324 (365)
|.||.....+.. ..+|+.++++|.....
T Consensus 523 ~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 523 GKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred CEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 889988642211 2599999999886543
No 5
>PF03478 DUF295: Protein of unknown function (DUF295); InterPro: IPR005174 This family of proteins are found in plants. The function of the proteins is unknown.
Probab=98.96 E-value=1.1e-09 Score=73.05 Aligned_cols=43 Identities=26% Similarity=0.336 Sum_probs=35.2
Q ss_pred eEEeccCCCeEEEeccCC------CCC-CCCCCeEEEeee----CCCceEEEEc
Q 040662 272 WFEIESLDDRVLFTGASC------LWV-PVEKGSAFANTV----HWFGRYSYIR 314 (365)
Q Consensus 272 W~~v~~lg~~~lfvg~~~------~~~-~~~~n~IYf~~~----~~~~~~vy~l 314 (365)
|+++++|||++||||.++ .++ ++++|||||.++ ..+..++|||
T Consensus 1 W~~v~~lGd~alFlg~~~~~~~~a~~~~g~~~n~IYf~~~~~~~~~~~~~Vy~m 54 (54)
T PF03478_consen 1 WVEVKSLGDRALFLGRNCSFSVSASDFPGLKGNCIYFLDDSSDESDRDIGVYNM 54 (54)
T ss_pred CcCccccCCEEEEEeCCccEEEECCCCCCccCCEEEEecCCCCCCCCCEEEEeC
Confidence 999999999999999874 446 789999999987 1344578886
No 6
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.86 E-value=2.3e-09 Score=69.41 Aligned_cols=38 Identities=37% Similarity=0.529 Sum_probs=33.9
Q ss_pred CCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
|..||+||+.+|+..|+..|++++..|||+|+.++.++
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh
Confidence 68999999999999999999999999999999998764
No 7
>PHA02790 Kelch-like protein; Provisional
Probab=98.82 E-value=4.1e-07 Score=89.11 Aligned_cols=185 Identities=11% Similarity=0.019 Sum_probs=117.5
Q ss_pred EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEE
Q 040662 70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAT 148 (365)
Q Consensus 70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ 148 (365)
..|||.+++|..++ + |..+......+.+|.|++..+.. ....+..+||.+++|..+|+++......++
T Consensus 290 ~~Ydp~~~~W~~~~~m-----~~~r~~~~~v~~~~~iYviGG~~------~~~sve~ydp~~n~W~~~~~l~~~r~~~~~ 358 (480)
T PHA02790 290 IAVNYISNNWIPIPPM-----NSPRLYASGVPANNKLYVVGGLP------NPTSVERWFHGDAAWVNMPSLLKPRCNPAV 358 (480)
T ss_pred EEEECCCCEEEECCCC-----CchhhcceEEEECCEEEEECCcC------CCCceEEEECCCCeEEECCCCCCCCcccEE
Confidence 56899999998875 3 32222222345689988887642 124577889999999999998433222111
Q ss_pred EecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCCcEEE-EEecCCceee
Q 040662 149 FSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVA-YNVASQNLEI 227 (365)
Q Consensus 149 ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~~~~ 227 (365)
... ++.+.++.... .....++.|++.++.|+..+....-.....++.++|++|+ +. |.+. ||+.+++|+.
T Consensus 359 ~~~----~g~IYviGG~~-~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv--~G--G~~e~ydp~~~~W~~ 429 (480)
T PHA02790 359 ASI----NNVIYVIGGHS-ETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFL--VG--RNAEFYCESSNTWTL 429 (480)
T ss_pred EEE----CCEEEEecCcC-CCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEE--EC--CceEEecCCCCcEeE
Confidence 111 12333332211 1224678999999999998753222234466789999999 77 5566 9999999998
Q ss_pred eecCCCceeceeEEEEeCCcEEEEEEEcCCC-ceEEEEeeCCCCCeEEe
Q 040662 228 LPYPPSILFMYKYLTEYDGSLLIFGKVVDGS-GYRVFTFNRSQMDWFEI 275 (365)
Q Consensus 228 i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~-~~~V~~ld~~~~~W~~v 275 (365)
++. ++......-++..+|++++++...... .-.|...|.++.+|.-.
T Consensus 430 ~~~-m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 430 IDD-PIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred cCC-CCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 763 222223345667799999998754221 23466677788999754
No 8
>PHA03098 kelch-like protein; Provisional
Probab=98.80 E-value=8.1e-07 Score=88.44 Aligned_cols=208 Identities=13% Similarity=0.106 Sum_probs=125.7
Q ss_pred cCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCC-CcCeEEEEEEecC
Q 040662 101 KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVG-IMEISCISICRPG 179 (365)
Q Consensus 101 ~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~-~~~~~~~~~~~~g 179 (365)
.++-|++..+... .+.....++.+||.|++|.++|+++.......+... ++.+.++.... ......++.|++.
T Consensus 293 ~~~~lyv~GG~~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~v~~yd~~ 366 (534)
T PHA03098 293 LNNVIYFIGGMNK--NNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF----NNRIYVIGGIYNSISLNTVESWKPG 366 (534)
T ss_pred ECCEEEEECCCcC--CCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE----CCEEEEEeCCCCCEecceEEEEcCC
Confidence 3666666655321 111234789999999999999987422221111111 23333332221 1134568899999
Q ss_pred CCceEEeeeeCCccceeeEEEECCEEEEEecCC---C----cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEE
Q 040662 180 DTTWTELRFQDNYRYVKNLVCADGFLYCSFFSL---E----AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIF 251 (365)
Q Consensus 180 ~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~---~----g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV 251 (365)
+++|+..+..........++.++|++|+ ++- . ..+. ||+.+++|+.++..| ........+..+|+++++
T Consensus 367 ~~~W~~~~~lp~~r~~~~~~~~~~~iYv--~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p-~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 367 ESKWREEPPLIFPRYNPCVVNVNNLIYV--IGGISKNDELLKTVECFSLNTNKWSKGSPLP-ISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CCceeeCCCcCcCCccceEEEECCEEEE--ECCcCCCCcccceEEEEeCCCCeeeecCCCC-ccccCceEEEECCEEEEE
Confidence 9999987642212234456778999999 753 1 2466 999999998776322 212223345568999988
Q ss_pred EEEcCCC----ceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeeeCC-----CceEEEEcCceeeeec
Q 040662 252 GKVVDGS----GYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHW-----FGRYSYIRDVCREFIR 322 (365)
Q Consensus 252 ~~~~~~~----~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~~~-----~~~~vy~l~~~~~~~~ 322 (365)
+...... .-.++..|..+.+|.++..++... + + . .....+|.||...... ....+||.++++|...
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r-~-~-~--~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR-I-N-A--SLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCccc-c-c-c--eEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 7653211 224888999999999998775310 0 0 0 0112478888876421 1236899999988865
No 9
>PHA02713 hypothetical protein; Provisional
Probab=98.78 E-value=4.2e-07 Score=90.47 Aligned_cols=192 Identities=11% Similarity=0.001 Sum_probs=120.7
Q ss_pred EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEE
Q 040662 70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAT 148 (365)
Q Consensus 70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ 148 (365)
..|||..++|..++ + |..+.....++.+|-|++..+..+ ......+..+||.|++|..+|+++.......+
T Consensus 323 ~~Yd~~~n~W~~~~~m-----~~~R~~~~~~~~~g~IYviGG~~~---~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~ 394 (557)
T PHA02713 323 YKINIENKIHVELPPM-----IKNRCRFSLAVIDDTIYAIGGQNG---TNVERTIECYTMGDDKWKMLPDMPIALSSYGM 394 (557)
T ss_pred EEEECCCCeEeeCCCC-----cchhhceeEEEECCEEEEECCcCC---CCCCceEEEEECCCCeEEECCCCCcccccccE
Confidence 56898888887664 3 322222334566888888876421 11134688999999999999987432221111
Q ss_pred EecCCCCCCeEEEEEeCCC-------------------cCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEe
Q 040662 149 FSATPISPDCVVFVTWVGI-------------------MEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSF 209 (365)
Q Consensus 149 ls~~p~s~~~~v~v~~~~~-------------------~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~ 209 (365)
... ++.+.++..... .....++.|++.++.|+.++..........++.++|++|+
T Consensus 395 ~~~----~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv-- 468 (557)
T PHA02713 395 CVL----DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYV-- 468 (557)
T ss_pred EEE----CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEE--
Confidence 111 233333322110 0134688999999999988753222234567899999999
Q ss_pred cCCC-------cEEE-EEecC-CceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEeccC
Q 040662 210 FSLE-------AIVA-YNVAS-QNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESL 278 (365)
Q Consensus 210 l~~~-------g~i~-~d~~~-~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~l 278 (365)
+.-. ..+. ||+.+ ++|+.++ +.+.......++..+|+|++++...+.. .|-..|..+.+|..+..-
T Consensus 469 ~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~-~m~~~r~~~~~~~~~~~iyv~Gg~~~~~--~~e~yd~~~~~W~~~~~~ 543 (557)
T PHA02713 469 VCDIKDEKNVKTCIFRYNTNTYNGWELIT-TTESRLSALHTILHDNTIMMLHCYESYM--LQDTFNVYTYEWNHICHQ 543 (557)
T ss_pred EeCCCCCCccceeEEEecCCCCCCeeEcc-ccCcccccceeEEECCEEEEEeeeccee--ehhhcCcccccccchhhh
Confidence 8531 1355 99998 7999776 3333334456677899999998865322 344556688999988753
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=98.69 E-value=1.9e-06 Score=84.47 Aligned_cols=196 Identities=9% Similarity=0.034 Sum_probs=119.4
Q ss_pred cCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCC
Q 040662 101 KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGD 180 (365)
Q Consensus 101 ~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~ 180 (365)
.++-|++..+... ......+..+||.+++|..+|+++........... ++.+.++.... ....++.|++.+
T Consensus 270 ~~~~lyviGG~~~---~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~--~~~sve~ydp~~ 340 (480)
T PHA02790 270 VGEVVYLIGGWMN---NEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLP--NPTSVERWFHGD 340 (480)
T ss_pred ECCEEEEEcCCCC---CCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcC--CCCceEEEECCC
Confidence 4566666654311 11234577899999999999988433211111111 23444433221 224578999999
Q ss_pred CceEEeeeeCCccceeeEEEECCEEEEEecCCC----cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEc
Q 040662 181 TTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE----AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVV 255 (365)
Q Consensus 181 ~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~----g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~ 255 (365)
++|+.++..........++.++|++|+ +.-. ..+. ||+.+++|+.++.++ ........+..+|+|++++.
T Consensus 341 n~W~~~~~l~~~r~~~~~~~~~g~IYv--iGG~~~~~~~ve~ydp~~~~W~~~~~m~-~~r~~~~~~~~~~~IYv~GG-- 415 (480)
T PHA02790 341 AAWVNMPSLLKPRCNPAVASINNVIYV--IGGHSETDTTTEYLLPNHDQWQFGPSTY-YPHYKSCALVFGRRLFLVGR-- 415 (480)
T ss_pred CeEEECCCCCCCCcccEEEEECCEEEE--ecCcCCCCccEEEEeCCCCEEEeCCCCC-CccccceEEEECCEEEEECC--
Confidence 999988753222234567889999999 8541 2355 999999998865332 21222345567899999873
Q ss_pred CCCceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeeeCCC-----ceEEEEcCceeee
Q 040662 256 DGSGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWF-----GRYSYIRDVCREF 320 (365)
Q Consensus 256 ~~~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~~~~-----~~~vy~l~~~~~~ 320 (365)
..++| |.++.+|+.+.+|...--..| ....+|.||....... ...+||.++++|.
T Consensus 416 ---~~e~y--dp~~~~W~~~~~m~~~r~~~~-----~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~ 475 (480)
T PHA02790 416 ---NAEFY--CESSNTWTLIDDPIYPRDNPE-----LIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWN 475 (480)
T ss_pred ---ceEEe--cCCCCcEeEcCCCCCCccccE-----EEEECCEEEEECCcCCCcccceEEEEECCCCeEE
Confidence 23444 557889999998863111111 1246788998864211 1258888888876
No 11
>PHA03098 kelch-like protein; Provisional
Probab=98.69 E-value=1.9e-06 Score=85.84 Aligned_cols=197 Identities=10% Similarity=0.039 Sum_probs=120.9
Q ss_pred eEEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE
Q 040662 69 CYLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA 147 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~ 147 (365)
...||+.+++|..++ + |..+......+.+|-|++..+.. .+.....+..+||.|++|..+|+++.......
T Consensus 313 v~~yd~~~~~W~~~~~~-----~~~R~~~~~~~~~~~lyv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~ 384 (534)
T PHA03098 313 VVSYDTKTKSWNKVPEL-----IYPRKNPGVTVFNNRIYVIGGIY---NSISLNTVESWKPGESKWREEPPLIFPRYNPC 384 (534)
T ss_pred EEEEeCCCCeeeECCCC-----CcccccceEEEECCEEEEEeCCC---CCEecceEEEEcCCCCceeeCCCcCcCCccce
Confidence 357899999997764 3 32222222334577777776542 11123568899999999999988743322221
Q ss_pred EEecCCCCCCeEEEEEeC--CCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC---------cEE
Q 040662 148 TFSATPISPDCVVFVTWV--GIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE---------AIV 216 (365)
Q Consensus 148 ~ls~~p~s~~~~v~v~~~--~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~---------g~i 216 (365)
+... ++.+.++... .......++.|++.+++|+.++..........++.++|++|+ ++-. ..+
T Consensus 385 ~~~~----~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~v 458 (534)
T PHA03098 385 VVNV----NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYV--IGGISYIDNIKVYNIV 458 (534)
T ss_pred EEEE----CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEE--ECCccCCCCCcccceE
Confidence 1111 2333333221 111235788999999999988742212234467888999999 7531 136
Q ss_pred E-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCC-ceEEEEeeCCCCCeEEeccCCC
Q 040662 217 A-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGS-GYRVFTFNRSQMDWFEIESLDD 280 (365)
Q Consensus 217 ~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~-~~~V~~ld~~~~~W~~v~~lg~ 280 (365)
. ||+.+++|+.++..+. ......++..+|+|++++...... .-.|+..|.++++|..+..++.
T Consensus 459 ~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 523 (534)
T PHA03098 459 ESYNPVTNKWTELSSLNF-PRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPK 523 (534)
T ss_pred EEecCCCCceeeCCCCCc-ccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcc
Confidence 6 9999999998763221 112233455689999887654221 3358888888999999887654
No 12
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=98.68 E-value=9.7e-07 Score=87.77 Aligned_cols=193 Identities=13% Similarity=0.140 Sum_probs=125.7
Q ss_pred EEEcCCCCceEEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEE
Q 040662 70 YLYDPCHKQKYTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKAT 148 (365)
Q Consensus 70 ~~~~~~~~~~~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ 148 (365)
..|||..++|..++ + +.-+...=+++.+|.|+...+..+ ......+-.++|.|.+|-..+++.......
T Consensus 352 e~YD~~~~~W~~~a~M-----~~~R~~~~v~~l~g~iYavGG~dg---~~~l~svE~YDp~~~~W~~va~m~~~r~~~-- 421 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPM-----NTKRSDFGVAVLDGKLYAVGGFDG---EKSLNSVECYDPVTNKWTPVAPMLTRRSGH-- 421 (571)
T ss_pred EEecCCCCceeccCCc-----cCccccceeEEECCEEEEEecccc---ccccccEEEecCCCCcccccCCCCcceeee--
Confidence 67899988888753 2 111111225677999999877631 111346889999999999998874322221
Q ss_pred EecCCCCCCeEEEEEeCCCc-CeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCC-c-----EEE-EEe
Q 040662 149 FSATPISPDCVVFVTWVGIM-EISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLE-A-----IVA-YNV 220 (365)
Q Consensus 149 ls~~p~s~~~~v~v~~~~~~-~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~-g-----~i~-~d~ 220 (365)
+.....+..+++-...+.. ....++.|+|.+++|+.++.....+....++..||++|+ +.-. | .+- ||+
T Consensus 422 -gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYv--vGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 422 -GVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYV--VGGFDGTSALSSVERYDP 498 (571)
T ss_pred -EEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEE--ECCccCCCccceEEEEcC
Confidence 1111112222221112222 457899999999999999864333345568999999999 8642 2 355 999
Q ss_pred cCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC---CceEEEEeeCCCCCeEEeccC
Q 040662 221 ASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG---SGYRVFTFNRSQMDWFEIESL 278 (365)
Q Consensus 221 ~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~---~~~~V~~ld~~~~~W~~v~~l 278 (365)
.+++|+.+. ++........++..+|+|++|...... ..++.| |.++.+|.+...+
T Consensus 499 ~~~~W~~v~-~m~~~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~y--dp~~d~W~~~~~~ 556 (571)
T KOG4441|consen 499 ETNQWTMVA-PMTSPRSAVGVVVLGGKLYAVGGFDGNNNLNTVECY--DPETDTWTEVTEP 556 (571)
T ss_pred CCCceeEcc-cCccccccccEEEECCEEEEEecccCccccceeEEc--CCCCCceeeCCCc
Confidence 999999885 333223455667789999999886432 345555 8889999998873
No 13
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.63 E-value=1.8e-07 Score=74.69 Aligned_cols=78 Identities=19% Similarity=0.456 Sum_probs=61.6
Q ss_pred EEEECCEEEEEecCCC-----cEEE-EEecCCceeeeecC--CCceeceeEEEEeCCcEEEEEEEcCC--CceEEEEeeC
Q 040662 198 LVCADGFLYCSFFSLE-----AIVA-YNVASQNLEILPYP--PSILFMYKYLTEYDGSLLIFGKVVDG--SGYRVFTFNR 267 (365)
Q Consensus 198 ~v~~~G~lY~~~l~~~-----g~i~-~d~~~~~~~~i~~p--~~~~~~~~~Lve~~G~L~lV~~~~~~--~~~~V~~ld~ 267 (365)
+++.||.+|+ +... ..|+ ||+.+++|+.++.| +........|++.+|+|+++...... ..++||.|+.
T Consensus 1 gicinGvly~--~a~~~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD 78 (129)
T PF08268_consen 1 GICINGVLYW--LAWSEDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLED 78 (129)
T ss_pred CEEECcEEEe--EEEECCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeec
Confidence 3689999988 8653 5677 99999999999987 33345678899999999998877532 3699999986
Q ss_pred C-CCCeEEecc
Q 040662 268 S-QMDWFEIES 277 (365)
Q Consensus 268 ~-~~~W~~v~~ 277 (365)
. +++|++...
T Consensus 79 ~~k~~Wsk~~~ 89 (129)
T PF08268_consen 79 YEKQEWSKKHI 89 (129)
T ss_pred cccceEEEEEE
Confidence 4 578998754
No 14
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.59 E-value=1.4e-08 Score=66.01 Aligned_cols=39 Identities=38% Similarity=0.490 Sum_probs=33.2
Q ss_pred CCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 16 SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 16 ~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
.|.+||+|++.+|+.+|+..++++++.|||+|++++.+.
T Consensus 2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC
Confidence 367899999999999999999999999999999998764
No 15
>PLN02153 epithiospecifier protein
Probab=98.59 E-value=2.4e-05 Score=73.30 Aligned_cols=211 Identities=14% Similarity=0.054 Sum_probs=123.1
Q ss_pred EEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccc------eeEEEEecCCCCCCeEEEEEeC-CCcCe
Q 040662 98 LDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFS------IAKATFSATPISPDCVVFVTWV-GIMEI 170 (365)
Q Consensus 98 ~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~------~~~~~ls~~p~s~~~~v~v~~~-~~~~~ 170 (365)
+...++-|++....... .......++++|+.+.+|..+|++.... ...+++ ++.+.++... +....
T Consensus 28 ~~~~~~~iyv~GG~~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~------~~~iyv~GG~~~~~~~ 100 (341)
T PLN02153 28 IAVVGDKLYSFGGELKP-NEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV------GTKLYIFGGRDEKREF 100 (341)
T ss_pred EEEECCEEEEECCccCC-CCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE------CCEEEEECCCCCCCcc
Confidence 33457777776553100 0111357999999999999887652111 111111 2333333221 11123
Q ss_pred EEEEEEecCCCceEEeeeeC-----CccceeeEEEECCEEEEEecCCC------------cEEE-EEecCCceeeeecCC
Q 040662 171 SCISICRPGDTTWTELRFQD-----NYRYVKNLVCADGFLYCSFFSLE------------AIVA-YNVASQNLEILPYPP 232 (365)
Q Consensus 171 ~~~~~~~~g~~~W~~~~~~~-----~~~~~~~~v~~~G~lY~~~l~~~------------g~i~-~d~~~~~~~~i~~p~ 232 (365)
..+++|++.+++|+.++... .......++..++++|+ +.-. ..+. ||+.+++|+.++.+.
T Consensus 101 ~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 101 SDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYV--FGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred CcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEE--ECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 46889999999999886421 11234566788999999 7421 1356 999999999776431
Q ss_pred --CceeceeEEEEeCCcEEEEEEEcC---------CCceEEEEeeCCCCCeEEeccCCC----eEEEeccCCCCCCCCCC
Q 040662 233 --SILFMYKYLTEYDGSLLIFGKVVD---------GSGYRVFTFNRSQMDWFEIESLDD----RVLFTGASCLWVPVEKG 297 (365)
Q Consensus 233 --~~~~~~~~Lve~~G~L~lV~~~~~---------~~~~~V~~ld~~~~~W~~v~~lg~----~~lfvg~~~~~~~~~~n 297 (365)
+......-++..+|+++++..... ...-.|+.+|.++.+|+++..+|. +... ..-..++
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~------~~~~~~~ 252 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVF------AHAVVGK 252 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCccee------eeEEECC
Confidence 111122234557899998864320 012358888888999999986542 1110 0113567
Q ss_pred eEEEeeeC--------------CCceEEEEcCceeeeecc
Q 040662 298 SAFANTVH--------------WFGRYSYIRDVCREFIRK 323 (365)
Q Consensus 298 ~IYf~~~~--------------~~~~~vy~l~~~~~~~~~ 323 (365)
+||..... .+...+||+++.+|....
T Consensus 253 ~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~ 292 (341)
T PLN02153 253 YIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG 292 (341)
T ss_pred EEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence 77776531 012468999999988654
No 16
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.53 E-value=6.3e-08 Score=60.53 Aligned_cols=35 Identities=37% Similarity=0.560 Sum_probs=33.3
Q ss_pred ChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 20 LPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 20 LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
||+|++.+|+.+|+..|+++++.|||+|+.++.++
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999999999999999999999998765
No 17
>PLN02193 nitrile-specifier protein
Probab=98.48 E-value=2.8e-05 Score=76.03 Aligned_cols=244 Identities=11% Similarity=0.029 Sum_probs=134.0
Q ss_pred EEEcCCC----CceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccc--
Q 040662 70 YLYDPCH----KQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFS-- 143 (365)
Q Consensus 70 ~~~~~~~----~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~-- 143 (365)
.+++|.+ .+|..+... ...|..+........++-|++....... .......++++|+.|.+|..+|+....+
T Consensus 140 y~~~~~~~~~~~~W~~~~~~-~~~P~pR~~h~~~~~~~~iyv~GG~~~~-~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~ 217 (470)
T PLN02193 140 YISLPSTPKLLGKWIKVEQK-GEGPGLRCSHGIAQVGNKIYSFGGEFTP-NQPIDKHLYVFDLETRTWSISPATGDVPHL 217 (470)
T ss_pred EEecCCChhhhceEEEcccC-CCCCCCccccEEEEECCEEEEECCcCCC-CCCeeCcEEEEECCCCEEEeCCCCCCCCCC
Confidence 3446544 578766420 0013222222233345666666543100 0011246899999999999876531111
Q ss_pred --eeEEEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeC---CccceeeEEEECCEEEEEecCCC----
Q 040662 144 --IAKATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQD---NYRYVKNLVCADGFLYCSFFSLE---- 213 (365)
Q Consensus 144 --~~~~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~---~~~~~~~~v~~~G~lY~~~l~~~---- 213 (365)
....+... ++.+.++... .......+..|++.+++|+.+.... .-.....++.+++++|+ +.-.
T Consensus 218 ~~~~~~~v~~----~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv--~GG~~~~~ 291 (470)
T PLN02193 218 SCLGVRMVSI----GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYV--FGGVSATA 291 (470)
T ss_pred cccceEEEEE----CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEE--ECCCCCCC
Confidence 11111111 2233332211 1113457889999999999986421 11234566778999999 7531
Q ss_pred --cEEE-EEecCCceeeeecCC--CceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEeccCCCeEEEeccC
Q 040662 214 --AIVA-YNVASQNLEILPYPP--SILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDDRVLFTGAS 288 (365)
Q Consensus 214 --g~i~-~d~~~~~~~~i~~p~--~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~ 288 (365)
..+. ||+.+.+|+.++.+. +......-++..+|+++++........-.||.+|..+.+|.++..+|..-. .+.
T Consensus 292 ~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~--~R~ 369 (470)
T PLN02193 292 RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPS--ERS 369 (470)
T ss_pred CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCC--Ccc
Confidence 2356 999999998776432 111222344556899998876432223468888989999999987753110 000
Q ss_pred CCCCCCCCCeEEEeeeCC--------------CceEEEEcCceeeeecc
Q 040662 289 CLWVPVEKGSAFANTVHW--------------FGRYSYIRDVCREFIRK 323 (365)
Q Consensus 289 ~~~~~~~~n~IYf~~~~~--------------~~~~vy~l~~~~~~~~~ 323 (365)
+...-..+|.||+..... +...+||+++.+|....
T Consensus 370 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 370 VFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred eeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 000012466777664321 12469999999998653
No 18
>PLN02153 epithiospecifier protein
Probab=98.47 E-value=4.5e-05 Score=71.48 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=115.4
Q ss_pred eEEEcCCCCceEEEecCCCCCCCCCC-CeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcc-----c
Q 040662 69 CYLYDPCHKQKYTVFNSDKNRTTLLG-ARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWRE-----F 142 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~l~~~~~P~~~~-~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~-----~ 142 (365)
...||+...+|..++... ..|.... .....+.++-|++...... ......++++||.|++|..++++.. .
T Consensus 52 ~~~yd~~~~~W~~~~~~~-~~p~~~~~~~~~~~~~~~iyv~GG~~~---~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~ 127 (341)
T PLN02153 52 LYVFDFNTHTWSIAPANG-DVPRISCLGVRMVAVGTKLYIFGGRDE---KREFSDFYSYDTVKNEWTFLTKLDEEGGPEA 127 (341)
T ss_pred EEEEECCCCEEEEcCccC-CCCCCccCceEEEEECCEEEEECCCCC---CCccCcEEEEECCCCEEEEeccCCCCCCCCC
Confidence 467899999998764210 0122111 1123345777777755311 1123578999999999998876511 1
Q ss_pred ce-eEEEEecCCCCCCeEEEEEeCCC-------cCeEEEEEEecCCCceEEeeeeC---CccceeeEEEECCEEEEEecC
Q 040662 143 SI-AKATFSATPISPDCVVFVTWVGI-------MEISCISICRPGDTTWTELRFQD---NYRYVKNLVCADGFLYCSFFS 211 (365)
Q Consensus 143 ~~-~~~~ls~~p~s~~~~v~v~~~~~-------~~~~~~~~~~~g~~~W~~~~~~~---~~~~~~~~v~~~G~lY~~~l~ 211 (365)
+. ..++. . ++.+.++..... .....+.+|++.+++|+.++.+. .......++.++|++|+ +.
T Consensus 128 R~~~~~~~-~----~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv--~G 200 (341)
T PLN02153 128 RTFHSMAS-D----ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWV--VY 200 (341)
T ss_pred ceeeEEEE-E----CCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEE--Ee
Confidence 11 11111 1 123222211110 01246789999999999987532 11223456778999998 63
Q ss_pred C--------------CcEEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcC---------C-CceEE
Q 040662 212 L--------------EAIVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVD---------G-SGYRV 262 (365)
Q Consensus 212 ~--------------~g~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~---------~-~~~~V 262 (365)
- ...+. ||+.+.+|+.++. |.++ ...-.+..+++|+++..... . ..-.|
T Consensus 201 G~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v 278 (341)
T PLN02153 201 GFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSAR--SVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEG 278 (341)
T ss_pred ccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCc--ceeeeEEECCEEEEECcccCCccccccccccccccE
Confidence 1 12466 9999999998753 2222 22233456789999876421 0 12279
Q ss_pred EEeeCCCCCeEEeccCC
Q 040662 263 FTFNRSQMDWFEIESLD 279 (365)
Q Consensus 263 ~~ld~~~~~W~~v~~lg 279 (365)
|.+|.++++|+++...+
T Consensus 279 ~~~d~~~~~W~~~~~~~ 295 (341)
T PLN02153 279 YALDTETLVWEKLGECG 295 (341)
T ss_pred EEEEcCccEEEeccCCC
Confidence 99999999999987543
No 19
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=98.47 E-value=7.2e-05 Score=70.22 Aligned_cols=168 Identities=10% Similarity=0.082 Sum_probs=99.0
Q ss_pred ccCCeEEEeccccccCCCCccccEEEEcC--CCCCeeeCCCCcc-cceeEEEEecCCCCCCeEEEEEeCCC-------cC
Q 040662 100 SKHGWVLFEGEKNVNSGGRKCSPLFFYSP--FADQIINLPAWRE-FSIAKATFSATPISPDCVVFVTWVGI-------ME 169 (365)
Q Consensus 100 s~~G~l~~~~~~~~~~~~~~~~~~~l~NP--~T~~~~~LP~~~~-~~~~~~~ls~~p~s~~~~v~v~~~~~-------~~ 169 (365)
..++-|++..... ...++.+|+ .+++|..+|+++. .+........ ++.+.++..... ..
T Consensus 15 ~~~~~vyv~GG~~-------~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~----~~~iYv~GG~~~~~~~~~~~~ 83 (346)
T TIGR03547 15 IIGDKVYVGLGSA-------GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAI----DGKLYVFGGIGKANSEGSPQV 83 (346)
T ss_pred EECCEEEEEcccc-------CCeeEEEECCCCCCCceECCCCCCCCcccceEEEE----CCEEEEEeCCCCCCCCCccee
Confidence 4467777765431 245777774 6788999998742 2221111111 123333222110 01
Q ss_pred eEEEEEEecCCCceEEeeeeCCccc-eeeEE-EECCEEEEEecCCC----------------------------------
Q 040662 170 ISCISICRPGDTTWTELRFQDNYRY-VKNLV-CADGFLYCSFFSLE---------------------------------- 213 (365)
Q Consensus 170 ~~~~~~~~~g~~~W~~~~~~~~~~~-~~~~v-~~~G~lY~~~l~~~---------------------------------- 213 (365)
...++.|++.+++|+.++.+..... ....+ .++|++|+ +.-.
T Consensus 84 ~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYv--iGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (346)
T TIGR03547 84 FDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYF--TGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPP 161 (346)
T ss_pred cccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEE--EcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCCh
Confidence 3468899999999999873211111 22233 68999999 7531
Q ss_pred ------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC----CceEEEEeeCCCCCeEEeccCCC
Q 040662 214 ------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG----SGYRVFTFNRSQMDWFEIESLDD 280 (365)
Q Consensus 214 ------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~----~~~~V~~ld~~~~~W~~v~~lg~ 280 (365)
..+. ||+.+++|+.++..+.......-++..+|+|+++...... ..+.+|.+|.++.+|.++..|+.
T Consensus 162 ~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~ 239 (346)
T TIGR03547 162 EDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP 239 (346)
T ss_pred hHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence 2466 9999999998764332112334456678999999865321 22344555556779999998863
No 20
>PLN02193 nitrile-specifier protein
Probab=98.35 E-value=4.8e-05 Score=74.40 Aligned_cols=199 Identities=11% Similarity=0.133 Sum_probs=118.6
Q ss_pred eEEEcCCCCceEEEecCCCCCCCCCC-CeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc---ccce
Q 040662 69 CYLYDPCHKQKYTVFNSDKNRTTLLG-ARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR---EFSI 144 (365)
Q Consensus 69 ~~~~~~~~~~~~~~~l~~~~~P~~~~-~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~---~~~~ 144 (365)
...||+.+.+|..++... ..|..+. .......++-|++..... .......++.+||.|++|..++++. ..+.
T Consensus 195 v~~yD~~~~~W~~~~~~g-~~P~~~~~~~~~v~~~~~lYvfGG~~---~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~ 270 (470)
T PLN02193 195 LYVFDLETRTWSISPATG-DVPHLSCLGVRMVSIGSTLYVFGGRD---ASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRS 270 (470)
T ss_pred EEEEECCCCEEEeCCCCC-CCCCCcccceEEEEECCEEEEECCCC---CCCCCccEEEEECCCCEEEEcCcCCCCCCCcc
Confidence 356899888998654210 0132211 112334577777765532 1112467999999999999987652 1111
Q ss_pred -eEEEEecCCCCCCeEEEEEeC-CCcCeEEEEEEecCCCceEEeeeeCCc---cceeeEEEECCEEEEEecCC-----Cc
Q 040662 145 -AKATFSATPISPDCVVFVTWV-GIMEISCISICRPGDTTWTELRFQDNY---RYVKNLVCADGFLYCSFFSL-----EA 214 (365)
Q Consensus 145 -~~~~ls~~p~s~~~~v~v~~~-~~~~~~~~~~~~~g~~~W~~~~~~~~~---~~~~~~v~~~G~lY~~~l~~-----~g 214 (365)
..++. . ++.++++... .......+..|++.+++|+.++.+... .....++.++|++|+ +.- ..
T Consensus 271 ~h~~~~-~----~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyv--iGG~~g~~~~ 343 (470)
T PLN02193 271 FHSMAA-D----EENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWV--VYGFNGCEVD 343 (470)
T ss_pred ceEEEE-E----CCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEE--EECCCCCccC
Confidence 11111 1 2233332211 112345688999999999988753211 223456778999998 642 13
Q ss_pred EEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcCC--------Cce--EEEEeeCCCCCeEEeccCC
Q 040662 215 IVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVDG--------SGY--RVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 215 ~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~~--------~~~--~V~~ld~~~~~W~~v~~lg 279 (365)
.+. ||+.+.+|+.++. |.++ ...-.+..+++|+++...... ..+ .+|.+|..+.+|.++..++
T Consensus 344 dv~~yD~~t~~W~~~~~~g~~P~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~ 421 (470)
T PLN02193 344 DVHYYDPVQDKWTQVETFGVRPSER--SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFG 421 (470)
T ss_pred ceEEEECCCCEEEEeccCCCCCCCc--ceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCC
Confidence 466 9999999998753 2232 222334568888888765310 112 5999999999999998776
Q ss_pred C
Q 040662 280 D 280 (365)
Q Consensus 280 ~ 280 (365)
.
T Consensus 422 ~ 422 (470)
T PLN02193 422 E 422 (470)
T ss_pred C
Confidence 3
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=98.30 E-value=0.00015 Score=68.96 Aligned_cols=191 Identities=9% Similarity=0.035 Sum_probs=107.0
Q ss_pred EccCCeEEEeccccccCCCCccccEEEEcCC--CCCeeeCCCCcc-cce--eEEEEecCCCCCCeEEEEEeCCC------
Q 040662 99 DSKHGWVLFEGEKNVNSGGRKCSPLFFYSPF--ADQIINLPAWRE-FSI--AKATFSATPISPDCVVFVTWVGI------ 167 (365)
Q Consensus 99 ~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~--T~~~~~LP~~~~-~~~--~~~~ls~~p~s~~~~v~v~~~~~------ 167 (365)
...++-|++..... ...++.+++. +++|..+|+++. ... ..+.+ ++.+.++.....
T Consensus 35 ~~~~~~iyv~gG~~-------~~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~------~~~IYV~GG~~~~~~~~~ 101 (376)
T PRK14131 35 AIDNNTVYVGLGSA-------GTSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFI------DGKLYVFGGIGKTNSEGS 101 (376)
T ss_pred EEECCEEEEEeCCC-------CCeEEEEECCCCCCCeEECCcCCCCCcccceEEEE------CCEEEEEcCCCCCCCCCc
Confidence 34466766654431 2356777765 578999887632 121 11111 123333221110
Q ss_pred -cCeEEEEEEecCCCceEEeeeeCCcc-ceeeEEE-ECCEEEEEecCCC-------------------------------
Q 040662 168 -MEISCISICRPGDTTWTELRFQDNYR-YVKNLVC-ADGFLYCSFFSLE------------------------------- 213 (365)
Q Consensus 168 -~~~~~~~~~~~g~~~W~~~~~~~~~~-~~~~~v~-~~G~lY~~~l~~~------------------------------- 213 (365)
.....+..|++.+++|+.++.+.... ....++. .+|++|+ +.-.
T Consensus 102 ~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv--~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~ 179 (376)
T PRK14131 102 PQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYI--TGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFD 179 (376)
T ss_pred eeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEE--ECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhc
Confidence 01246788999999999987421111 1223333 7999999 7531
Q ss_pred ---------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcC----CCceEEEEeeCCCCCeEEeccCC
Q 040662 214 ---------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVD----GSGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 214 ---------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~----~~~~~V~~ld~~~~~W~~v~~lg 279 (365)
..+. ||+.+++|+.+...|........++..+++|+++..... ...+.++++|.++.+|.++..|+
T Consensus 180 ~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p 259 (376)
T PRK14131 180 KKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLP 259 (376)
T ss_pred CChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCC
Confidence 2466 999999999876433212233445667899999886431 12344456666778999999886
Q ss_pred C-eEEEeccCCCCC--CCCCCeEEEeee
Q 040662 280 D-RVLFTGASCLWV--PVEKGSAFANTV 304 (365)
Q Consensus 280 ~-~~lfvg~~~~~~--~~~~n~IYf~~~ 304 (365)
. +.-........+ ...+|+||+...
T Consensus 260 ~~~~~~~~~~~~~~~a~~~~~~iyv~GG 287 (376)
T PRK14131 260 PAPGGSSQEGVAGAFAGYSNGVLLVAGG 287 (376)
T ss_pred CCCcCCcCCccceEeceeECCEEEEeec
Confidence 4 211111000001 236778888753
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.27 E-value=9.6e-05 Score=68.69 Aligned_cols=151 Identities=10% Similarity=0.074 Sum_probs=88.4
Q ss_pred ccEEEE-cCCCC-CeeeCCCCcccc-eeEEEEecCCCCCCeEEEEEeCC-CcCeEEEEEEecCCCce----EEeeeeCCc
Q 040662 121 SPLFFY-SPFAD-QIINLPAWREFS-IAKATFSATPISPDCVVFVTWVG-IMEISCISICRPGDTTW----TELRFQDNY 192 (365)
Q Consensus 121 ~~~~l~-NP~T~-~~~~LP~~~~~~-~~~~~ls~~p~s~~~~v~v~~~~-~~~~~~~~~~~~g~~~W----~~~~~~~~~ 192 (365)
..++++ +|... +|..+++++... +..+ .+. ++.+.++.... ......+..|+..++.| +.++.....
T Consensus 39 ~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~-~~~----~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~ 113 (323)
T TIGR03548 39 KGIYIAKDENSNLKWVKDGQLPYEAAYGAS-VSV----ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT 113 (323)
T ss_pred eeeEEEecCCCceeEEEcccCCccccceEE-EEE----CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC
Confidence 357766 45433 688877663322 2211 111 23444432211 11345677888888887 343321111
Q ss_pred cceeeEEEECCEEEEEecCCC------cEEE-EEecCCceeeeec-CCCceeceeEEEEeCCcEEEEEEEcCCCceEEEE
Q 040662 193 RYVKNLVCADGFLYCSFFSLE------AIVA-YNVASQNLEILPY-PPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFT 264 (365)
Q Consensus 193 ~~~~~~v~~~G~lY~~~l~~~------g~i~-~d~~~~~~~~i~~-p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ 264 (365)
.....++.++|++|+ +.-. ..+. ||+.+++|+.++. |... ......+..+|+|+++..........++.
T Consensus 114 ~~~~~~~~~~~~iYv--~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~ 190 (323)
T TIGR03548 114 FENGSACYKDGTLYV--GGGNRNGKPSNKSYLFNLETQEWFELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYK 190 (323)
T ss_pred ccCceEEEECCEEEE--EeCcCCCccCceEEEEcCCCCCeeECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEE
Confidence 123466788999999 7531 2466 9999999998763 3211 22334456789999987643222345788
Q ss_pred eeCCCCCeEEeccCC
Q 040662 265 FNRSQMDWFEIESLD 279 (365)
Q Consensus 265 ld~~~~~W~~v~~lg 279 (365)
.|.++.+|.++..+.
T Consensus 191 yd~~~~~W~~~~~~~ 205 (323)
T TIGR03548 191 YSPKKNQWQKVADPT 205 (323)
T ss_pred EecCCCeeEECCCCC
Confidence 898899999998763
No 23
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=98.19 E-value=0.00016 Score=67.20 Aligned_cols=171 Identities=10% Similarity=0.091 Sum_probs=98.1
Q ss_pred EEEcCCCCce----EEEe-cCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcc-cc
Q 040662 70 YLYDPCHKQK----YTVF-NSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWRE-FS 143 (365)
Q Consensus 70 ~~~~~~~~~~----~~~~-l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~-~~ 143 (365)
..||+.+.+| ..++ + |...........+|-|++..... .+.....+..+||.|++|..+|+++. .+
T Consensus 91 ~~~d~~~~~w~~~~~~~~~l-----p~~~~~~~~~~~~~~iYv~GG~~---~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 91 YRITLDESKEELICETIGNL-----PFTFENGSACYKDGTLYVGGGNR---NGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred EEEEEcCCceeeeeeEcCCC-----CcCccCceEEEECCEEEEEeCcC---CCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 4577777776 3322 2 32222222334578887775531 11124579999999999999987632 22
Q ss_pred eeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeC--Ccc----ceeeEEEECCEEEEEecCCC----
Q 040662 144 IAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQD--NYR----YVKNLVCADGFLYCSFFSLE---- 213 (365)
Q Consensus 144 ~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~--~~~----~~~~~v~~~G~lY~~~l~~~---- 213 (365)
...++... ++.+.++..........+..|++.+++|+.++... ..+ ....+++.+|++|+ +.-.
T Consensus 163 ~~~~~~~~----~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv--~GG~~~~~ 236 (323)
T TIGR03548 163 VQPVCVKL----QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLC--IGGFNKDV 236 (323)
T ss_pred CcceEEEE----CCEEEEEcCCCCccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEE--ECCcCHHH
Confidence 21111111 22333322211112235679999999999987421 111 12334566899998 7531
Q ss_pred ----------------------------------cEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEE
Q 040662 214 ----------------------------------AIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKV 254 (365)
Q Consensus 214 ----------------------------------g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~ 254 (365)
..+. ||+.+++|+.++..+.......-++..+|+|+++...
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~ 312 (323)
T TIGR03548 237 YNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGE 312 (323)
T ss_pred HHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEECCEEEEEecc
Confidence 2467 9999999998873221122344567789999998864
No 24
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=98.03 E-value=2.7e-05 Score=64.86 Aligned_cols=80 Identities=14% Similarity=0.261 Sum_probs=57.5
Q ss_pred EEEECCEEEEEecCCC--c----EEE-EEecCCce-eeeecCCCce--eceeEEE-EeCCcEEEEEEEcCCCceEEEEee
Q 040662 198 LVCADGFLYCSFFSLE--A----IVA-YNVASQNL-EILPYPPSIL--FMYKYLT-EYDGSLLIFGKVVDGSGYRVFTFN 266 (365)
Q Consensus 198 ~v~~~G~lY~~~l~~~--g----~i~-~d~~~~~~-~~i~~p~~~~--~~~~~Lv-e~~G~L~lV~~~~~~~~~~V~~ld 266 (365)
.|++||.+|| ++.. + .|+ ||+.+++| +.++.|.... .....|. ..+|+|+++........++||.|+
T Consensus 1 gV~vnG~~hW--~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~~~~~~~IWvm~ 78 (164)
T PF07734_consen 1 GVFVNGALHW--LAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCDETSKIEIWVMK 78 (164)
T ss_pred CEEECCEEEe--eEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEeccCCccEEEEEEe
Confidence 3899999977 8752 1 577 99999999 6777665432 2334553 346789998765545579999999
Q ss_pred CC---CCCeEEeccCC
Q 040662 267 RS---QMDWFEIESLD 279 (365)
Q Consensus 267 ~~---~~~W~~v~~lg 279 (365)
+. ..+|+|+-+++
T Consensus 79 ~~~~~~~SWtK~~~i~ 94 (164)
T PF07734_consen 79 KYGYGKESWTKLFTID 94 (164)
T ss_pred eeccCcceEEEEEEEe
Confidence 52 56899988765
No 25
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=97.92 E-value=0.0025 Score=59.81 Aligned_cols=218 Identities=15% Similarity=0.080 Sum_probs=118.4
Q ss_pred EEEcC--CCCceEEEe-cCCCCCCCC-CCCeEEEccCCeEEEeccccccC-CC--CccccEEEEcCCCCCeeeCCC-Ccc
Q 040662 70 YLYDP--CHKQKYTVF-NSDKNRTTL-LGARPLDSKHGWVLFEGEKNVNS-GG--RKCSPLFFYSPFADQIINLPA-WRE 141 (365)
Q Consensus 70 ~~~~~--~~~~~~~~~-l~~~~~P~~-~~~~~~~s~~G~l~~~~~~~~~~-~~--~~~~~~~l~NP~T~~~~~LP~-~~~ 141 (365)
..||+ ..++|..+. + |.. +....+.+.+|-|++........ .+ .....+..+||.++.|..++. .+.
T Consensus 32 ~~~d~~~~~~~W~~l~~~-----p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~ 106 (346)
T TIGR03547 32 YKLDLKKPSKGWQKIADF-----PGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPV 106 (346)
T ss_pred EEEECCCCCCCceECCCC-----CCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCC
Confidence 45664 456787664 3 421 21222445588888876642100 00 013468899999999999863 211
Q ss_pred cceeEEEEecCCCCCCeEEEEEeCCCc-----------------------------------CeEEEEEEecCCCceEEe
Q 040662 142 FSIAKATFSATPISPDCVVFVTWVGIM-----------------------------------EISCISICRPGDTTWTEL 186 (365)
Q Consensus 142 ~~~~~~~ls~~p~s~~~~v~v~~~~~~-----------------------------------~~~~~~~~~~g~~~W~~~ 186 (365)
.....++... .+..+.++...... ....++.|++.+++|+.+
T Consensus 107 ~~~~~~~~~~---~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 107 GLLGASGFSL---HNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL 183 (346)
T ss_pred cccceeEEEE---eCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence 1111111100 01232222111000 014689999999999998
Q ss_pred eeeCC-ccceeeEEEECCEEEEEecCCC-------cEEE-EEe--cCCceeeeecC-CCce-----eceeEEEEeCCcEE
Q 040662 187 RFQDN-YRYVKNLVCADGFLYCSFFSLE-------AIVA-YNV--ASQNLEILPYP-PSIL-----FMYKYLTEYDGSLL 249 (365)
Q Consensus 187 ~~~~~-~~~~~~~v~~~G~lY~~~l~~~-------g~i~-~d~--~~~~~~~i~~p-~~~~-----~~~~~Lve~~G~L~ 249 (365)
+.... ......++.++|++|+ +.-. ..+. ||+ +..+|+.++.. .+.. ......+..+|+|+
T Consensus 184 ~~~p~~~r~~~~~~~~~~~iyv--~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iy 261 (346)
T TIGR03547 184 GENPFLGTAGSAIVHKGNKLLL--INGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLL 261 (346)
T ss_pred ccCCCCcCCCceEEEECCEEEE--EeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEE
Confidence 74321 1234467788999999 7421 1233 554 55589876532 2211 11233566799999
Q ss_pred EEEEEcCC--------------------CceEEEEeeCCCCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeee
Q 040662 250 IFGKVVDG--------------------SGYRVFTFNRSQMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTV 304 (365)
Q Consensus 250 lV~~~~~~--------------------~~~~V~~ld~~~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~ 304 (365)
++...... ..+++|.. ++.+|+++..|+...-..+ .-..+|.||++..
T Consensus 262 v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~--~~~~W~~~~~lp~~~~~~~-----~~~~~~~iyv~GG 329 (346)
T TIGR03547 262 VAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL--DNGKWSKVGKLPQGLAYGV-----SVSWNNGVLLIGG 329 (346)
T ss_pred EeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe--cCCcccccCCCCCCceeeE-----EEEcCCEEEEEec
Confidence 98764210 13455554 5679999998874221111 0136899998864
No 26
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=97.34 E-value=0.016 Score=55.07 Aligned_cols=193 Identities=14% Similarity=0.133 Sum_probs=102.1
Q ss_pred EEEcCCCCceEEEecCCCCCCCCC-CCeEEEccCCeEEEeccccccC-CC------------------------------
Q 040662 70 YLYDPCHKQKYTVFNSDKNRTTLL-GARPLDSKHGWVLFEGEKNVNS-GG------------------------------ 117 (365)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~~~P~~~-~~~~~~s~~G~l~~~~~~~~~~-~~------------------------------ 117 (365)
..||+..++|..+.... |... ++..+...+|-|++........ .+
T Consensus 109 ~~YD~~~n~W~~~~~~~---p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~ 185 (376)
T PRK14131 109 YKYDPKTNSWQKLDTRS---PVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDY 185 (376)
T ss_pred EEEeCCCCEEEeCCCCC---CCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhc
Confidence 56899999998875210 2211 2222222578888776542100 00
Q ss_pred CccccEEEEcCCCCCeeeCCCCcccc-eeEEEEecCCCCCCeEEEEEeC--CCcCeEEE--EEEecCCCceEEeee-eCC
Q 040662 118 RKCSPLFFYSPFADQIINLPAWREFS-IAKATFSATPISPDCVVFVTWV--GIMEISCI--SICRPGDTTWTELRF-QDN 191 (365)
Q Consensus 118 ~~~~~~~l~NP~T~~~~~LP~~~~~~-~~~~~ls~~p~s~~~~v~v~~~--~~~~~~~~--~~~~~g~~~W~~~~~-~~~ 191 (365)
.....+.++||.|++|..+++++... ....+... ++.+.++... .......+ ..+++.++.|..++. |..
T Consensus 186 ~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~----~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~ 261 (376)
T PRK14131 186 FFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIK----GNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPA 261 (376)
T ss_pred CcCceEEEEECCCCeeeECCcCCCCCCCcceEEEE----CCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCC
Confidence 00246899999999999988763211 11111111 2233333221 10011122 234678899998874 211
Q ss_pred c----c-c-e-eeEEEECCEEEEEecCCC-----------------------cEEE-EEecCCceeeeec-CCCceecee
Q 040662 192 Y----R-Y-V-KNLVCADGFLYCSFFSLE-----------------------AIVA-YNVASQNLEILPY-PPSILFMYK 239 (365)
Q Consensus 192 ~----~-~-~-~~~v~~~G~lY~~~l~~~-----------------------g~i~-~d~~~~~~~~i~~-p~~~~~~~~ 239 (365)
. + . . ...+..+|++|+ +.-. -.+. ||+.+++|+.+.. |.+. ...
T Consensus 262 ~~~~~~~~~~~~~a~~~~~~iyv--~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r--~~~ 337 (376)
T PRK14131 262 PGGSSQEGVAGAFAGYSNGVLLV--AGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL--AYG 337 (376)
T ss_pred CcCCcCCccceEeceeECCEEEE--eeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCc--cce
Confidence 0 0 0 1 124678999998 6421 0133 8999999987653 2232 223
Q ss_pred EEEEeCCcEEEEEEEcCC--CceEEEEeeCCCCCeE
Q 040662 240 YLTEYDGSLLIFGKVVDG--SGYRVFTFNRSQMDWF 273 (365)
Q Consensus 240 ~Lve~~G~L~lV~~~~~~--~~~~V~~ld~~~~~W~ 273 (365)
..+..+|+|+++...... ..-.|+.++.+.+.++
T Consensus 338 ~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~ 373 (376)
T PRK14131 338 VSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLT 373 (376)
T ss_pred EEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEE
Confidence 356779999999875321 2235655554444544
No 27
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.14 E-value=0.00027 Score=62.83 Aligned_cols=39 Identities=33% Similarity=0.517 Sum_probs=37.0
Q ss_pred CCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 16 SWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 16 ~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
.|-.||+||++.|++.|+.+++++...|||+|+.+.++.
T Consensus 97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de 135 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE 135 (419)
T ss_pred CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc
Confidence 599999999999999999999999999999999998774
No 28
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=95.78 E-value=0.13 Score=47.95 Aligned_cols=114 Identities=18% Similarity=0.230 Sum_probs=69.4
Q ss_pred eEEEECCEEEEEecCC---CcEEE-EEecCCceeeeec---CCCceeceeEEEEe-CCcEEEEEEEcCC-------CceE
Q 040662 197 NLVCADGFLYCSFFSL---EAIVA-YNVASQNLEILPY---PPSILFMYKYLTEY-DGSLLIFGKVVDG-------SGYR 261 (365)
Q Consensus 197 ~~v~~~G~lY~~~l~~---~g~i~-~d~~~~~~~~i~~---p~~~~~~~~~Lve~-~G~L~lV~~~~~~-------~~~~ 261 (365)
..+.++|-||- -.. ++.+. ||....+|+.+.. |+|+ +....|+. .|.|+|.+.-... -.-.
T Consensus 80 ELilfGGEf~n--gqkT~vYndLy~Yn~k~~eWkk~~spn~P~pR--sshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD 155 (521)
T KOG1230|consen 80 ELILFGGEFYN--GQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPR--SSHQAVAVPSNILWLFGGEFASPNQEQFHHYKD 155 (521)
T ss_pred eeEEecceeec--ceeEEEeeeeeEEeccccceeEeccCCCcCCC--ccceeEEeccCeEEEeccccCCcchhhhhhhhh
Confidence 34455555554 211 34566 8999999987643 3343 33333433 4677776643211 2346
Q ss_pred EEEeeCCCCCeEEeccCCC-------e--------EEEeccCCCCCCCCCCeEEEeeeCCCceEEEEcCceeeeecc
Q 040662 262 VFTFNRSQMDWFEIESLDD-------R--------VLFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREFIRK 323 (365)
Q Consensus 262 V~~ld~~~~~W~~v~~lg~-------~--------~lfvg~~~~~~~~~~n~IYf~~~~~~~~~vy~l~~~~~~~~~ 323 (365)
.|.+|..+++|+++..=|+ | .||-|.+ ...++.|||.+ ..+|||++-+|.-.+
T Consensus 156 ~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFh----d~nr~y~YyND-----vy~FdLdtykW~Kle 223 (521)
T KOG1230|consen 156 LWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFH----DSNRDYIYYND-----VYAFDLDTYKWSKLE 223 (521)
T ss_pred eeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEccee----cCCCceEEeee-----eEEEeccceeeeecc
Confidence 8999999999999985442 1 1222211 23677788865 689999999887544
No 29
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=95.70 E-value=0.29 Score=43.39 Aligned_cols=122 Identities=14% Similarity=0.225 Sum_probs=77.7
Q ss_pred eEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEE
Q 040662 96 RPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISI 175 (365)
Q Consensus 96 ~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~ 175 (365)
-++..-+|=|.++.-. .+.+..+||+++.--.+|+........-...+||. -.+.++.. ....++.
T Consensus 193 Gi~atpdGsvwyasla--------gnaiaridp~~~~aev~p~P~~~~~gsRriwsdpi---g~~wittw---g~g~l~r 258 (353)
T COG4257 193 GICATPDGSVWYASLA--------GNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPI---GRAWITTW---GTGSLHR 258 (353)
T ss_pred ceEECCCCcEEEEecc--------ccceEEcccccCCcceecCCCcccccccccccCcc---CcEEEecc---CCceeeE
Confidence 4556667877777554 36788999999977677766332221122334443 22333332 3467889
Q ss_pred EecCCCceEEeeeeCCccceeeEEEE--CCEEEEEecCC-CcEEE-EEecCCceeeeecCCCc
Q 040662 176 CRPGDTTWTELRFQDNYRYVKNLVCA--DGFLYCSFFSL-EAIVA-YNVASQNLEILPYPPSI 234 (365)
Q Consensus 176 ~~~g~~~W~~~~~~~~~~~~~~~v~~--~G~lY~~~l~~-~g~i~-~d~~~~~~~~i~~p~~~ 234 (365)
|++.+.+|.+.+.|..-....+ +++ .|+++. -+- .|.|+ ||+.+.+|++++.|.+.
T Consensus 259 fdPs~~sW~eypLPgs~arpys-~rVD~~grVW~--sea~agai~rfdpeta~ftv~p~pr~n 318 (353)
T COG4257 259 FDPSVTSWIEYPLPGSKARPYS-MRVDRHGRVWL--SEADAGAIGRFDPETARFTVLPIPRPN 318 (353)
T ss_pred eCcccccceeeeCCCCCCCcce-eeeccCCcEEe--eccccCceeecCcccceEEEecCCCCC
Confidence 9999999999987642222222 333 466654 333 47899 99999999999887664
No 30
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.68 E-value=0.071 Score=46.84 Aligned_cols=166 Identities=15% Similarity=0.220 Sum_probs=96.1
Q ss_pred CCeEEEeccccccCCCCccccEEEEcCCCCCeee------CCCCcccceeEEEEecCCCCCCeEEEEEeCC--CcCeEEE
Q 040662 102 HGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIIN------LPAWREFSIAKATFSATPISPDCVVFVTWVG--IMEISCI 173 (365)
Q Consensus 102 ~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~------LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~--~~~~~~~ 173 (365)
.+-+++-...+ .+....+.++-++|-|.+|.+ +|..++ ...+++++. ..| ++-.+.. +.....+
T Consensus 88 ~d~~yvWGGRN--D~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRD-GHsAcV~gn----~My-iFGGye~~a~~FS~d~ 159 (392)
T KOG4693|consen 88 QDKAYVWGGRN--DDEGACNLLYEFDPETNVWKKPEVEGFVPGARD-GHSACVWGN----QMY-IFGGYEEDAQRFSQDT 159 (392)
T ss_pred cceEEEEcCcc--CcccccceeeeeccccccccccceeeecCCccC-CceeeEECc----EEE-EecChHHHHHhhhccc
Confidence 45555554432 222245678899999999864 344322 122222211 011 1101111 1123567
Q ss_pred EEEecCCCceEEeee---eCCccceeeEEEECCEEEEEecCC---------------CcEEE-EEecCCceeeeec-CC-
Q 040662 174 SICRPGDTTWTELRF---QDNYRYVKNLVCADGFLYCSFFSL---------------EAIVA-YNVASQNLEILPY-PP- 232 (365)
Q Consensus 174 ~~~~~g~~~W~~~~~---~~~~~~~~~~v~~~G~lY~~~l~~---------------~g~i~-~d~~~~~~~~i~~-p~- 232 (365)
+..+..+-.|+.+.. |.....+...+..+|.+|. +.- ...|+ +|+.++.|..-+. +.
T Consensus 160 h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYi--FGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~ 237 (392)
T KOG4693|consen 160 HVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYI--FGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMK 237 (392)
T ss_pred eeEeccceeeeehhccCCCchhhhhhhhhhccceEEE--eccccccCCCccchhhhhcceeEEEeccccccccCCCCCcC
Confidence 788888899998874 3333345566677888887 531 12577 9999999964322 11
Q ss_pred CceeceeEEEEeCCcEEEEEEEcCC--C-ceEEEEeeCCCCCeEEecc
Q 040662 233 SILFMYKYLTEYDGSLLIFGKVVDG--S-GYRVFTFNRSQMDWFEIES 277 (365)
Q Consensus 233 ~~~~~~~~Lve~~G~L~lV~~~~~~--~-~~~V~~ld~~~~~W~~v~~ 277 (365)
|.+......-..+|++++...+... . --++|.+|..+..|..++-
T Consensus 238 P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~ 285 (392)
T KOG4693|consen 238 PGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISV 285 (392)
T ss_pred CCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeec
Confidence 3333333344579999998877532 2 3459999999999999874
No 31
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=95.62 E-value=0.4 Score=47.13 Aligned_cols=150 Identities=21% Similarity=0.234 Sum_probs=92.8
Q ss_pred ccEEEEcCCCCCeeeCCCCccc----ceeEEEEecCCCCCCeEEEEEeCCC-c-CeEEEEEEecCCCceEEeeeeCC--c
Q 040662 121 SPLFFYSPFADQIINLPAWREF----SIAKATFSATPISPDCVVFVTWVGI-M-EISCISICRPGDTTWTELRFQDN--Y 192 (365)
Q Consensus 121 ~~~~l~NP~T~~~~~LP~~~~~----~~~~~~ls~~p~s~~~~v~v~~~~~-~-~~~~~~~~~~g~~~W~~~~~~~~--~ 192 (365)
..++.+|+.|++|..+.+..+. ..+.++.. ++++++....+. . ....+++|+..+..|..+..... .
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~-----g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~ 213 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVV-----GTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPS 213 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEE-----CCEEEEECCccCcccceeeeeeeccccccceecccCCCCCC
Confidence 4799999999999877554221 11222211 234444222111 1 35678999999999999985322 2
Q ss_pred -cceeeEEEECCEEEEEecCC-C------cEEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcCC--
Q 040662 193 -RYVKNLVCADGFLYCSFFSL-E------AIVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVDG-- 257 (365)
Q Consensus 193 -~~~~~~v~~~G~lY~~~l~~-~------g~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~~-- 257 (365)
.....++.+++++++ +.- . +.+. +|+.+..|..+.. |.++ ....++..+..++++......
T Consensus 214 pR~gH~~~~~~~~~~v--~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R--~~h~~~~~~~~~~l~gG~~~~~~ 289 (482)
T KOG0379|consen 214 PRYGHAMVVVGNKLLV--FGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR--SGHSLTVSGDHLLLFGGGTDPKQ 289 (482)
T ss_pred CCCCceEEEECCeEEE--EeccccCCceecceEeeecccceeeeccccCCCCCCc--ceeeeEEECCEEEEEcCCccccc
Confidence 245677788888877 432 1 2466 8998888874331 2232 333344445556666655432
Q ss_pred -CceEEEEeeCCCCCeEEeccCC
Q 040662 258 -SGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 258 -~~~~V~~ld~~~~~W~~v~~lg 279 (365)
.--++|.++.++..|.++...+
T Consensus 290 ~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 290 EPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ccccccccccccccceeeeeccc
Confidence 3457899998889999999887
No 32
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=95.49 E-value=0.43 Score=42.12 Aligned_cols=151 Identities=13% Similarity=0.140 Sum_probs=88.4
Q ss_pred cccEEEEcCCCCCeeeCCCCc-c----cceeEEEEecCCCCCCeEEE-----EEeCCC---c-CeEEEEEEecCCCceEE
Q 040662 120 CSPLFFYSPFADQIINLPAWR-E----FSIAKATFSATPISPDCVVF-----VTWVGI---M-EISCISICRPGDTTWTE 185 (365)
Q Consensus 120 ~~~~~l~NP~T~~~~~LP~~~-~----~~~~~~~ls~~p~s~~~~v~-----v~~~~~---~-~~~~~~~~~~g~~~W~~ 185 (365)
+-+++++|..+-+|..+||-- . ..+..+-+ . .-++-+|. ..+.+. . ....+.-|++.++.|..
T Consensus 43 piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPy--q-RYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~ 119 (392)
T KOG4693|consen 43 PIDVHVLNAENYRWTKMPPGITKATIESPYPAVPY--Q-RYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKK 119 (392)
T ss_pred cceeEEeeccceeEEecCcccccccccCCCCccch--h-hcCceEEEEcceEEEEcCccCcccccceeeeeccccccccc
Confidence 467999999999999999830 0 01110000 0 01122222 122221 1 23345678999999998
Q ss_pred eeeeCC---ccceeeEEEECCEEEEEecCC--------CcEEE-EEecCCceeeeec--CCCceeceeEEEEeCCcEEEE
Q 040662 186 LRFQDN---YRYVKNLVCADGFLYCSFFSL--------EAIVA-YNVASQNLEILPY--PPSILFMYKYLTEYDGSLLIF 251 (365)
Q Consensus 186 ~~~~~~---~~~~~~~v~~~G~lY~~~l~~--------~g~i~-~d~~~~~~~~i~~--p~~~~~~~~~Lve~~G~L~lV 251 (365)
...... .....+.++.+..+|. +.- +..+. +|+++.+|+.+.. .|+++....--+..+|..++.
T Consensus 120 p~v~G~vPgaRDGHsAcV~gn~Myi--FGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiF 197 (392)
T KOG4693|consen 120 PEVEGFVPGARDGHSACVWGNQMYI--FGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIF 197 (392)
T ss_pred cceeeecCCccCCceeeEECcEEEE--ecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEe
Confidence 764311 2234566778888888 642 23577 9999999998864 234322212223345777777
Q ss_pred EEEcCC----------CceEEEEeeCCCCCeEEe
Q 040662 252 GKVVDG----------SGYRVFTFNRSQMDWFEI 275 (365)
Q Consensus 252 ~~~~~~----------~~~~V~~ld~~~~~W~~v 275 (365)
....+. -.-.|..||..++.|.+-
T Consensus 198 GGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~ 231 (392)
T KOG4693|consen 198 GGRSDESGPFHSIHEQYCDTIMALDLATGAWTRT 231 (392)
T ss_pred ccccccCCCccchhhhhcceeEEEeccccccccC
Confidence 655431 234577788888999875
No 33
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=93.97 E-value=1.5 Score=43.20 Aligned_cols=150 Identities=13% Similarity=0.083 Sum_probs=88.9
Q ss_pred cEEEEcCCCCCeeeCCCCcccc-----eeEEEEecCCCCCCeEEEEEeCC--CcCeEEEEEEecCCCceEEeeeeCC---
Q 040662 122 PLFFYSPFADQIINLPAWREFS-----IAKATFSATPISPDCVVFVTWVG--IMEISCISICRPGDTTWTELRFQDN--- 191 (365)
Q Consensus 122 ~~~l~NP~T~~~~~LP~~~~~~-----~~~~~ls~~p~s~~~~v~v~~~~--~~~~~~~~~~~~g~~~W~~~~~~~~--- 191 (365)
.++++|--+..|......-..+ ...+++ ++..+++.... ......++.|+..+..|+.+..-..
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~------~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~ 162 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAV------GDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPP 162 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEE------CCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCC
Confidence 4999999997776543321111 111111 12333322111 1124578999999999999874211
Q ss_pred ccceeeEEEECCEEEEEecCC-------CcEEE-EEecCCceeeeecC--CCceeceeEEEEeCCcEEEEEEEcCC--Cc
Q 040662 192 YRYVKNLVCADGFLYCSFFSL-------EAIVA-YNVASQNLEILPYP--PSILFMYKYLTEYDGSLLIFGKVVDG--SG 259 (365)
Q Consensus 192 ~~~~~~~v~~~G~lY~~~l~~-------~g~i~-~d~~~~~~~~i~~p--~~~~~~~~~Lve~~G~L~lV~~~~~~--~~ 259 (365)
......++.++.++|+ ..- ...+. ||+.+.+|..+... .|......-++..+++++++.....+ .-
T Consensus 163 ~r~~Hs~~~~g~~l~v--fGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l 240 (482)
T KOG0379|consen 163 PRAGHSATVVGTKLVV--FGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYL 240 (482)
T ss_pred CcccceEEEECCEEEE--ECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCcee
Confidence 2235567777888887 642 12466 89999999877542 22212333445557777777655422 33
Q ss_pred eEEEEeeCCCCCeEEeccCC
Q 040662 260 YRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 260 ~~V~~ld~~~~~W~~v~~lg 279 (365)
-.+|.||..+.+|.++...|
T Consensus 241 ~D~~~ldl~~~~W~~~~~~g 260 (482)
T KOG0379|consen 241 NDVHILDLSTWEWKLLPTGG 260 (482)
T ss_pred cceEeeecccceeeeccccC
Confidence 46999999889999766544
No 34
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=93.73 E-value=1.5 Score=41.28 Aligned_cols=108 Identities=14% Similarity=0.233 Sum_probs=71.7
Q ss_pred eEEEEEEecCCCceEEeeeeCC-cc-ceeeEEEE-CCEEEEE---ecCC-------CcEEE-EEecCCceeeeecCC-Cc
Q 040662 170 ISCISICRPGDTTWTELRFQDN-YR-YVKNLVCA-DGFLYCS---FFSL-------EAIVA-YNVASQNLEILPYPP-SI 234 (365)
Q Consensus 170 ~~~~~~~~~g~~~W~~~~~~~~-~~-~~~~~v~~-~G~lY~~---~l~~-------~g~i~-~d~~~~~~~~i~~p~-~~ 234 (365)
...+.+|....++|+.+..|.. .+ ....+|.+ .|.+|.| |.+. +-.+. ||+.+.+|+.+..+- |.
T Consensus 97 YndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS 176 (521)
T KOG1230|consen 97 YNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPS 176 (521)
T ss_pred eeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCC
Confidence 3467789999999999986521 22 23344444 5788771 1121 12355 999999999887642 33
Q ss_pred eeceeEEEEeCCcEEEEEEEcCC-----CceEEEEeeCCCCCeEEecc
Q 040662 235 LFMYKYLTEYDGSLLIFGKVVDG-----SGYRVFTFNRSQMDWFEIES 277 (365)
Q Consensus 235 ~~~~~~Lve~~G~L~lV~~~~~~-----~~~~V~~ld~~~~~W~~v~~ 277 (365)
......+|.+.-+|.+.+...+. -.=.||.+|.++-+|.+++-
T Consensus 177 ~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klep 224 (521)
T KOG1230|consen 177 PRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEP 224 (521)
T ss_pred CCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccC
Confidence 33556678888888888776542 12348888888999999986
No 35
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=92.30 E-value=0.099 Score=47.51 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=34.6
Q ss_pred CCCh----HHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 18 SDLP----LEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 18 ~~LP----~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
..|| ++|.+.||.-|...||..+..|||+|+.+++++
T Consensus 76 ~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg 116 (499)
T KOG0281|consen 76 TALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG 116 (499)
T ss_pred HhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc
Confidence 4589 999999999999999999999999999999876
No 36
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=92.16 E-value=0.28 Score=31.40 Aligned_cols=39 Identities=23% Similarity=0.521 Sum_probs=30.8
Q ss_pred EEEeCCcEEEEEEE--c--CCCceEEEEeeCCCCCeEEeccCC
Q 040662 241 LTEYDGSLLIFGKV--V--DGSGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 241 Lve~~G~L~lV~~~--~--~~~~~~V~~ld~~~~~W~~v~~lg 279 (365)
.+..+++|+++... . ....-.||.+|.++.+|.++..+|
T Consensus 7 ~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 7 AVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred EEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 45568999999877 1 125677999999999999998775
No 37
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.78 E-value=0.089 Score=47.41 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=32.8
Q ss_pred CCChHHHHHHHHhcCC-----hhhhhhhhhcchhhHHhhccC
Q 040662 18 SDLPLEIINSIVSRLY-----VVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 18 ~~LP~Dll~~Il~rLp-----~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
+.||+|||..|+.+.= ..++-++.+|||.|+-++..+
T Consensus 108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~ 149 (366)
T KOG2997|consen 108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP 149 (366)
T ss_pred hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh
Confidence 5699999999999863 489999999999999998775
No 38
>PF13964 Kelch_6: Kelch motif
Probab=90.36 E-value=0.54 Score=30.13 Aligned_cols=40 Identities=13% Similarity=0.281 Sum_probs=31.9
Q ss_pred EEEEeCCcEEEEEEEcC--CCceEEEEeeCCCCCeEEeccCC
Q 040662 240 YLTEYDGSLLIFGKVVD--GSGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 240 ~Lve~~G~L~lV~~~~~--~~~~~V~~ld~~~~~W~~v~~lg 279 (365)
.++..+|+|++++.... ...-.||.+|.++++|+++.+|.
T Consensus 6 s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 6 SAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCC
Confidence 45667899999987654 23467999999999999999886
No 39
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=89.47 E-value=0.99 Score=28.27 Aligned_cols=41 Identities=10% Similarity=0.197 Sum_probs=32.4
Q ss_pred eEEEEeCCcEEEEEEEcC-C-CceEEEEeeCCCCCeEEeccCC
Q 040662 239 KYLTEYDGSLLIFGKVVD-G-SGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 239 ~~Lve~~G~L~lV~~~~~-~-~~~~V~~ld~~~~~W~~v~~lg 279 (365)
.-.+..+++|++++.... . ..-.|+.+|..+++|+++.+|+
T Consensus 5 ~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 5 HAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp EEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 345667999999998765 2 4466999999999999998764
No 40
>PF13964 Kelch_6: Kelch motif
Probab=82.68 E-value=4.1 Score=25.87 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=26.9
Q ss_pred ccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc
Q 040662 100 SKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR 140 (365)
Q Consensus 100 s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~ 140 (365)
+.+|-|++..+.... ......+.++||.|++|.++|+++
T Consensus 9 ~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp 47 (50)
T PF13964_consen 9 VVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMP 47 (50)
T ss_pred EECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCC
Confidence 345666666554210 223578999999999999999874
No 41
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=81.99 E-value=1.2 Score=42.02 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=35.7
Q ss_pred CCCCCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 14 RGSWSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 14 ~~~w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
...| .||.|++..|++.|..+++.|.+.+|+.|.-.+.+-
T Consensus 70 ~~~~-~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 70 SISR-SLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cccc-cCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence 3455 599999999999999999999999999999888764
No 42
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=80.84 E-value=36 Score=29.31 Aligned_cols=207 Identities=13% Similarity=0.106 Sum_probs=104.2
Q ss_pred eEEEcCCCCceE-EEecCCCCCCCCCCCeEEEc-cCCeEEEeccccccCCCCccccEEEEcCCCCCee---eCCCCcccc
Q 040662 69 CYLYDPCHKQKY-TVFNSDKNRTTLLGARPLDS-KHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQII---NLPAWREFS 143 (365)
Q Consensus 69 ~~~~~~~~~~~~-~~~l~~~~~P~~~~~~~~~s-~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~---~LP~~~~~~ 143 (365)
...+|+.+++.. +..+. +...+...... .+|.+++.... +.++.+|+.||+.+ .++.. ..
T Consensus 5 l~~~d~~tG~~~W~~~~~----~~~~~~~~~~~~~~~~v~~~~~~---------~~l~~~d~~tG~~~W~~~~~~~--~~ 69 (238)
T PF13360_consen 5 LSALDPRTGKELWSYDLG----PGIGGPVATAVPDGGRVYVASGD---------GNLYALDAKTGKVLWRFDLPGP--IS 69 (238)
T ss_dssp EEEEETTTTEEEEEEECS----SSCSSEEETEEEETTEEEEEETT---------SEEEEEETTTSEEEEEEECSSC--GG
T ss_pred EEEEECCCCCEEEEEECC----CCCCCccceEEEeCCEEEEEcCC---------CEEEEEECCCCCEEEEeecccc--cc
Confidence 456788776533 33441 22222221133 58888888554 78999999999853 44332 11
Q ss_pred eeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEe--cCCCceEE-eee-e-CCccceeeEEEECCEEEEEecCCCcEEE-
Q 040662 144 IAKATFSATPISPDCVVFVTWVGIMEISCISICR--PGDTTWTE-LRF-Q-DNYRYVKNLVCADGFLYCSFFSLEAIVA- 217 (365)
Q Consensus 144 ~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~--~g~~~W~~-~~~-~-~~~~~~~~~v~~~G~lY~~~l~~~g~i~- 217 (365)
...+ . .++-+++.. .. ..+..++ .|.-.|+. ... + ..........+.++.+|+ ....|.|+
T Consensus 70 ~~~~-~-----~~~~v~v~~-~~----~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~l~~ 136 (238)
T PF13360_consen 70 GAPV-V-----DGGRVYVGT-SD----GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYV--GTSSGKLVA 136 (238)
T ss_dssp SGEE-E-----ETTEEEEEE-TT----SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEE--EETCSEEEE
T ss_pred ceee-e-----ccccccccc-ce----eeeEecccCCcceeeeeccccccccccccccCceEecCEEEE--EeccCcEEE
Confidence 1111 1 122333322 21 1555565 45568985 332 1 111223455556888888 77778888
Q ss_pred EEecCCc--eee-eecCCCce------eceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCC--eEEeccCCCeEE-Ee
Q 040662 218 YNVASQN--LEI-LPYPPSIL------FMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMD--WFEIESLDDRVL-FT 285 (365)
Q Consensus 218 ~d~~~~~--~~~-i~~p~~~~------~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~--W~~v~~lg~~~l-fv 285 (365)
+|+.+.+ |+. +..+.... .....++-.+|.+++.. .. . .+..+|.++.+ |. .. +++..- .
T Consensus 137 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~--g--~~~~~d~~tg~~~w~-~~-~~~~~~~~- 208 (238)
T PF13360_consen 137 LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSS-GD--G--RVVAVDLATGEKLWS-KP-ISGIYSLP- 208 (238)
T ss_dssp EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEEC-CT--S--SEEEEETTTTEEEEE-EC-SS-ECECE-
T ss_pred EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEc-CC--C--eEEEEECCCCCEEEE-ec-CCCccCCc-
Confidence 9988763 543 22222110 01122333356444322 11 1 15666665543 83 33 554211 1
Q ss_pred ccCCCCCCCCCCeEEEeeeCCCceEEEEcCceee
Q 040662 286 GASCLWVPVEKGSAFANTVHWFGRYSYIRDVCRE 319 (365)
Q Consensus 286 g~~~~~~~~~~n~IYf~~~~~~~~~vy~l~~~~~ 319 (365)
...++.||..+ .......+++++|+.
T Consensus 209 -------~~~~~~l~~~~-~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 209 -------SVDGGTLYVTS-SDGRLYALDLKTGKV 234 (238)
T ss_dssp -------ECCCTEEEEEE-TTTEEEEEETTTTEE
T ss_pred -------eeeCCEEEEEe-CCCEEEEEECCCCCE
Confidence 14688888887 344457888888753
No 43
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=80.67 E-value=49 Score=30.81 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=59.7
Q ss_pred eeeEEEE--CCEEEEEecCCCcEEE-EEecCCc------eeeeecCC--Cce-eceeEEEEe---CCcEEEEEEEcC---
Q 040662 195 VKNLVCA--DGFLYCSFFSLEAIVA-YNVASQN------LEILPYPP--SIL-FMYKYLTEY---DGSLLIFGKVVD--- 256 (365)
Q Consensus 195 ~~~~v~~--~G~lY~~~l~~~g~i~-~d~~~~~------~~~i~~p~--~~~-~~~~~Lve~---~G~L~lV~~~~~--- 256 (365)
+.+.++. +|.+|+ ++.+|.|. .|+..+. |+.+..-. ..+ -....++.. .|+|++......
T Consensus 186 f~~~~~~~~~~~~~F--~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gs 263 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYF--VSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGS 263 (342)
T ss_dssp -S--EEETTTTEEEE--EBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-
T ss_pred ccccceECCCCeEEE--EecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCC
Confidence 4555655 468988 99999999 9998764 32221000 011 122334443 478876554321
Q ss_pred --CCceEEEEeeCCCCCeEEeccCCCeE--EEeccCCCCCCCCCCeEEEeeeCCCceEEEEcCceeee
Q 040662 257 --GSGYRVFTFNRSQMDWFEIESLDDRV--LFTGASCLWVPVEKGSAFANTVHWFGRYSYIRDVCREF 320 (365)
Q Consensus 257 --~~~~~V~~ld~~~~~W~~v~~lg~~~--lfvg~~~~~~~~~~n~IYf~~~~~~~~~vy~l~~~~~~ 320 (365)
...-+||.+|.++++=+..-.|+..+ +=|... ..=.+|-.+.......+|+..+++.-
T Consensus 264 HKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd------~~P~L~~~~~~~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 264 HKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQD------DKPLLYALSAGDGTLDVYDAATGKLV 325 (342)
T ss_dssp TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESS------SS-EEEEEETTTTEEEEEETTT--EE
T ss_pred ccCCceEEEEEECCCCeEEEEEeCCCccceEEEccC------CCcEEEEEcCCCCeEEEEeCcCCcEE
Confidence 25789999999776433333343322 222211 22245544433334678888888754
No 44
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=80.19 E-value=3.7 Score=24.76 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=18.5
Q ss_pred eeeEEEECCEEEEEecCCCcEEE-EEec
Q 040662 195 VKNLVCADGFLYCSFFSLEAIVA-YNVA 221 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~~g~i~-~d~~ 221 (365)
...+++.+|++|+ .+.+|.+. ||++
T Consensus 14 ~~~~~v~~g~vyv--~~~dg~l~ald~~ 39 (40)
T PF13570_consen 14 WSSPAVAGGRVYV--GTGDGNLYALDAA 39 (40)
T ss_dssp -S--EECTSEEEE--E-TTSEEEEEETT
T ss_pred CcCCEEECCEEEE--EcCCCEEEEEeCC
Confidence 4566888999999 99999999 9975
No 45
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=78.69 E-value=1.2 Score=40.87 Aligned_cols=40 Identities=23% Similarity=0.550 Sum_probs=35.2
Q ss_pred CCCCCChHHHHHHHHhcCCh--------hhhhhhhhcchhhHHhhccC
Q 040662 15 GSWSDLPLEIINSIVSRLYV--------VYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 15 ~~w~~LP~Dll~~Il~rLp~--------~~l~r~r~VCk~Wrs~~~~~ 54 (365)
..|+.||.++|.+|+.|..- ++.+....||+.||....+.
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhcccc
Confidence 58999999999999999952 36889999999999988775
No 46
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=77.63 E-value=7.4 Score=24.62 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=24.8
Q ss_pred eeeEEEECCEEEEEecCCC---------cEEE-EEecCCceeeeec
Q 040662 195 VKNLVCADGFLYCSFFSLE---------AIVA-YNVASQNLEILPY 230 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~~---------g~i~-~d~~~~~~~~i~~ 230 (365)
...++..++++|+ +.-. ..+. ||+.+.+|+.++.
T Consensus 4 ~hs~~~~~~kiyv--~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 4 GHSAVVLDGKIYV--FGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred ceEEEEECCEEEE--ECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 3466788999998 6432 2466 9999999987764
No 47
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=75.74 E-value=1.1 Score=44.70 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=35.6
Q ss_pred CCCChHHHHHHHHhcCChhhhhhhhhcchhhHHhhccC
Q 040662 17 WSDLPLEIINSIVSRLYVVYQIRFRAVCKRWRAADIQS 54 (365)
Q Consensus 17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk~Wrs~~~~~ 54 (365)
-+.||.++...|+..|+.+++++.++||+.|+.++.+.
T Consensus 108 i~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 108 LSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred hhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc
Confidence 46799999999999999999999999999999998875
No 48
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=75.17 E-value=5.7 Score=24.64 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=25.2
Q ss_pred eeeEEEECCEEEEEecCC-------CcEEE-EEecCCceeeee
Q 040662 195 VKNLVCADGFLYCSFFSL-------EAIVA-YNVASQNLEILP 229 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~-------~g~i~-~d~~~~~~~~i~ 229 (365)
...++.++|++|+ +.- ...+. ||+.+++|+.++
T Consensus 4 ~~~~~~~~~~iyv--~GG~~~~~~~~~~v~~yd~~~~~W~~~~ 44 (47)
T PF01344_consen 4 GHAAVVVGNKIYV--IGGYDGNNQPTNSVEVYDPETNTWEELP 44 (47)
T ss_dssp SEEEEEETTEEEE--EEEBESTSSBEEEEEEEETTTTEEEEEE
T ss_pred cCEEEEECCEEEE--EeeecccCceeeeEEEEeCCCCEEEEcC
Confidence 3467889999999 752 12466 999999998776
No 49
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=74.87 E-value=69 Score=29.97 Aligned_cols=117 Identities=11% Similarity=0.103 Sum_probs=62.3
Q ss_pred EEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCC---cC----
Q 040662 97 PLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGI---ME---- 169 (365)
Q Consensus 97 ~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~---~~---- 169 (365)
+.+..+..|+..+.. ....|+|+-|+....+|.+......-+.++. .++.+++ ..... ..
T Consensus 71 F~al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~V---G~~LY~m-~~~~~~~~~~~~~~ 137 (342)
T PF07893_consen 71 FFALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSV---GDKLYAM-DRSPFPEPAGRPDF 137 (342)
T ss_pred EEEecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEe---CCeEEEe-eccCccccccCccc
Confidence 333456777777665 6799999999999999987432222232322 1222222 11110 00
Q ss_pred -eEEEEEEec--------CCCceEEeeeeCCc--c-c----eeeEEEECCEEEEEecCCCc---EEE-EEecCCceeee
Q 040662 170 -ISCISICRP--------GDTTWTELRFQDNY--R-Y----VKNLVCADGFLYCSFFSLEA---IVA-YNVASQNLEIL 228 (365)
Q Consensus 170 -~~~~~~~~~--------g~~~W~~~~~~~~~--~-~----~~~~v~~~G~lY~~~l~~~g---~i~-~d~~~~~~~~i 228 (365)
..++..|+. .+-+|+.++.|.-. . . +..-++++|.--+ ++..+ -.. ||..+.+|+..
T Consensus 138 ~~FE~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~--vS~~~~~~GTysfDt~~~~W~~~ 214 (342)
T PF07893_consen 138 PCFEALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIF--VSVNGRRWGTYSFDTESHEWRKH 214 (342)
T ss_pred eeEEEeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEE--EEecCCceEEEEEEcCCcceeec
Confidence 122333442 12367777654211 1 0 3333333777633 75543 256 99999999865
No 50
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=74.40 E-value=3.9 Score=25.78 Aligned_cols=35 Identities=20% Similarity=0.426 Sum_probs=20.8
Q ss_pred CCcEEEEEEEcCC--CceEEEEeeCCCCCeEEeccCC
Q 040662 245 DGSLLIFGKVVDG--SGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 245 ~G~L~lV~~~~~~--~~~~V~~ld~~~~~W~~v~~lg 279 (365)
+++|+++...... ..-.+|.+|.++++|+++.+++
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence 5788888766432 3346899999999999996654
No 51
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A.
Probab=70.14 E-value=18 Score=33.40 Aligned_cols=61 Identities=20% Similarity=0.302 Sum_probs=36.8
Q ss_pred EEec-CCceeeeecCCCceeceeEEEEe-CCcEEEEEEEcCCCceEEEEeeCCCCCeEE-eccCC
Q 040662 218 YNVA-SQNLEILPYPPSILFMYKYLTEY-DGSLLIFGKVVDGSGYRVFTFNRSQMDWFE-IESLD 279 (365)
Q Consensus 218 ~d~~-~~~~~~i~~p~~~~~~~~~Lve~-~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~-v~~lg 279 (365)
|-.+ ..+|.+-..-++.++..+.++|. +|+|+|+..+.+ .+-+||+-...+..|.+ +..|.
T Consensus 154 YS~d~g~~W~lskg~s~~gC~~psv~EWe~gkLlM~~~c~~-g~rrVYeS~DmG~tWtea~gtls 217 (310)
T PF13859_consen 154 YSTDDGKTWKLSKGMSPAGCSDPSVVEWEDGKLLMMTACDD-GRRRVYESGDMGTTWTEALGTLS 217 (310)
T ss_dssp EESSTTSS-EE-S----TT-EEEEEEEE-TTEEEEEEE-TT-S---EEEESSTTSS-EE-TTTTT
T ss_pred EECCCccceEeccccCCCCcceEEEEeccCCeeEEEEeccc-ceEEEEEEcccceehhhccCccc
Confidence 5444 45787643333455678899999 899999998863 35689999888889998 44553
No 52
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=70.05 E-value=10 Score=21.33 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEECCEEEEEecCCCcEEE-EEecCC
Q 040662 198 LVCADGFLYCSFFSLEAIVA-YNVASQ 223 (365)
Q Consensus 198 ~v~~~G~lY~~~l~~~g~i~-~d~~~~ 223 (365)
.+..+|.+|+ -+.+|.+. +|..+.
T Consensus 2 ~~~~~~~v~~--~~~~g~l~a~d~~~G 26 (33)
T smart00564 2 VVLSDGTVYV--GSTDGTLYALDAKTG 26 (33)
T ss_pred cEEECCEEEE--EcCCCEEEEEEcccC
Confidence 3566788988 88888888 998664
No 53
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=65.49 E-value=59 Score=29.94 Aligned_cols=55 Identities=9% Similarity=0.157 Sum_probs=37.4
Q ss_pred eeeEEEECCEEEEEecCC-CcEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEc
Q 040662 195 VKNLVCADGFLYCSFFSL-EAIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVV 255 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~-~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~ 255 (365)
..+.-.++|+||+ ++. .|.+. +|+++++++.+..-|.....-.++ |++++|+...
T Consensus 205 PhSPRWhdgrLwv--ldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~----G~llvVgmSk 261 (335)
T TIGR03032 205 PHSPRWYQGKLWL--LNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA----GDFAFVGLSK 261 (335)
T ss_pred CcCCcEeCCeEEE--EECCCCEEEEEcCCCCcEEEEEECCCCCccccee----CCEEEEEecc
Confidence 4567789999999 887 48888 999878887765433211111121 9999888764
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=64.85 E-value=1.3e+02 Score=28.54 Aligned_cols=30 Identities=13% Similarity=0.255 Sum_probs=23.4
Q ss_pred eeEEEECCEEEEEecCCCcEEE-EEecCC--ceee
Q 040662 196 KNLVCADGFLYCSFFSLEAIVA-YNVASQ--NLEI 227 (365)
Q Consensus 196 ~~~v~~~G~lY~~~l~~~g~i~-~d~~~~--~~~~ 227 (365)
...++.+|.+|+ .+..|.+. +|+.+. .|+.
T Consensus 250 ~sP~v~~~~vy~--~~~~g~l~ald~~tG~~~W~~ 282 (394)
T PRK11138 250 TTPVVVGGVVYA--LAYNGNLVALDLRSGQIVWKR 282 (394)
T ss_pred CCcEEECCEEEE--EEcCCeEEEEECCCCCEEEee
Confidence 456778999999 88888888 999765 3653
No 55
>smart00612 Kelch Kelch domain.
Probab=63.78 E-value=11 Score=22.96 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=16.1
Q ss_pred eEEEEEEecCCCceEEeee
Q 040662 170 ISCISICRPGDTTWTELRF 188 (365)
Q Consensus 170 ~~~~~~~~~g~~~W~~~~~ 188 (365)
...++.|++.++.|+..+.
T Consensus 14 ~~~v~~yd~~~~~W~~~~~ 32 (47)
T smart00612 14 LKSVEVYDPETNKWTPLPS 32 (47)
T ss_pred eeeEEEECCCCCeEccCCC
Confidence 4578899999999998874
No 56
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=61.99 E-value=94 Score=26.84 Aligned_cols=111 Identities=17% Similarity=0.093 Sum_probs=58.8
Q ss_pred EECCEEEEEecCCCcEEE-EEecCCceeeeecCCCc---eec-eeEEEE--eCCc--EEEEEEEc---CCCceEEEEeeC
Q 040662 200 CADGFLYCSFFSLEAIVA-YNVASQNLEILPYPPSI---LFM-YKYLTE--YDGS--LLIFGKVV---DGSGYRVFTFNR 267 (365)
Q Consensus 200 ~~~G~lY~~~l~~~g~i~-~d~~~~~~~~i~~p~~~---~~~-~~~Lve--~~G~--L~lV~~~~---~~~~~~V~~ld~ 267 (365)
.|||.++. ... ..+. +||.++.+..++.|+.. ... ...+.- ..++ ++.+.... ....++||.+
T Consensus 3 sCnGLlc~--~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~-- 77 (230)
T TIGR01640 3 PCDGLICF--SYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTL-- 77 (230)
T ss_pred ccceEEEE--ecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEe--
Confidence 57999944 443 4555 99999988888755421 111 111221 1232 22222110 1245677777
Q ss_pred CCCCeEEeccCCCeEEEeccCCCCCC-CCCCeEEEeeeCCC-----ceEEEEcCceeee
Q 040662 268 SQMDWFEIESLDDRVLFTGASCLWVP-VEKGSAFANTVHWF-----GRYSYIRDVCREF 320 (365)
Q Consensus 268 ~~~~W~~v~~lg~~~lfvg~~~~~~~-~~~n~IYf~~~~~~-----~~~vy~l~~~~~~ 320 (365)
.+..|.++........ .. .. + ..++.+|+...... ..-.||+++.++.
T Consensus 78 ~~~~Wr~~~~~~~~~~-~~---~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~ 131 (230)
T TIGR01640 78 GSNSWRTIECSPPHHP-LK---SR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFK 131 (230)
T ss_pred CCCCccccccCCCCcc-cc---CC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEe
Confidence 4568999874332110 00 11 3 25666887754211 2458999988877
No 57
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=60.41 E-value=11 Score=23.77 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=22.7
Q ss_pred CcEEEEEEEc--C-CCceEEEEeeCCCCCeEEeccCC
Q 040662 246 GSLLIFGKVV--D-GSGYRVFTFNRSQMDWFEIESLD 279 (365)
Q Consensus 246 G~L~lV~~~~--~-~~~~~V~~ld~~~~~W~~v~~lg 279 (365)
++++++.... . ...=.+|++|..+.+|+++.+++
T Consensus 2 ~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P 38 (49)
T PF13415_consen 2 NKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLP 38 (49)
T ss_pred CEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCC
Confidence 4455555443 1 12346899999999999997665
No 58
>PF13013 F-box-like_2: F-box-like domain
Probab=60.35 E-value=8.9 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCCChHHHHHHHHhcCChhhhhhhhhcch
Q 040662 17 WSDLPLEIINSIVSRLYVVYQIRFRAVCK 45 (365)
Q Consensus 17 w~~LP~Dll~~Il~rLp~~~l~r~r~VCk 45 (365)
-.+||.||+..|+..-.-++++..-..|+
T Consensus 22 l~DLP~ELl~~I~~~C~~~~l~~l~~~~~ 50 (109)
T PF13013_consen 22 LLDLPWELLQLIFDYCNDPILLALSRTCR 50 (109)
T ss_pred hhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence 56899999999999999877766666665
No 59
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=59.72 E-value=1.6e+02 Score=27.98 Aligned_cols=143 Identities=11% Similarity=0.024 Sum_probs=69.2
Q ss_pred EEEEEEecCC-----CceEEeeeeCCccceeeEEEECCEEEEEecCC----CcEEE-EEecCCc---ee-eeecCCCcee
Q 040662 171 SCISICRPGD-----TTWTELRFQDNYRYVKNLVCADGFLYCSFFSL----EAIVA-YNVASQN---LE-ILPYPPSILF 236 (365)
Q Consensus 171 ~~~~~~~~g~-----~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~----~g~i~-~d~~~~~---~~-~i~~p~~~~~ 236 (365)
..+.+.+..+ ..|+.+..... .....+-..++.||+ ++. .+.|+ ++++... |. ++..+... .
T Consensus 252 s~v~~~d~~~~~~~~~~~~~l~~~~~-~~~~~v~~~~~~~yi--~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~-~ 327 (414)
T PF02897_consen 252 SEVYLLDLDDGGSPDAKPKLLSPRED-GVEYYVDHHGDRLYI--LTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDED-V 327 (414)
T ss_dssp EEEEEEECCCTTTSS-SEEEEEESSS-S-EEEEEEETTEEEE--EE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSS-E
T ss_pred CeEEEEeccccCCCcCCcEEEeCCCC-ceEEEEEccCCEEEE--eeCCCCCCcEEEEecccccccccceeEEcCCCCc-e
Confidence 4555666554 37777764311 123344566899998 775 46888 9987653 54 33322221 1
Q ss_pred ceeEEEEeCCcEEEEEEEcCCCceEEEEeeCC-CCCeEEeccCCCeEEEeccCCCCCCCCCCeEEEeeeCCC---ceEEE
Q 040662 237 MYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRS-QMDWFEIESLDDRVLFTGASCLWVPVEKGSAFANTVHWF---GRYSY 312 (365)
Q Consensus 237 ~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~-~~~W~~v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~~~~---~~~vy 312 (365)
.-..+...++.|++..... ..-+|..++.. +..-.++.-.+...+. +.+ ....+|.++|.-.++. ....|
T Consensus 328 ~l~~~~~~~~~Lvl~~~~~--~~~~l~v~~~~~~~~~~~~~~p~~g~v~-~~~---~~~~~~~~~~~~ss~~~P~~~y~~ 401 (414)
T PF02897_consen 328 SLEDVSLFKDYLVLSYREN--GSSRLRVYDLDDGKESREIPLPEAGSVS-GVS---GDFDSDELRFSYSSFTTPPTVYRY 401 (414)
T ss_dssp EEEEEEEETTEEEEEEEET--TEEEEEEEETT-TEEEEEEESSSSSEEE-EEE---S-TT-SEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEEECCEEEEEEEEC--CccEEEEEECCCCcEEeeecCCcceEEe-ccC---CCCCCCEEEEEEeCCCCCCEEEEE
Confidence 1112222456666655543 33445555544 2222223222222211 111 1246888888764322 23588
Q ss_pred EcCceeeeecc
Q 040662 313 IRDVCREFIRK 323 (365)
Q Consensus 313 ~l~~~~~~~~~ 323 (365)
|+++++....+
T Consensus 402 d~~t~~~~~~k 412 (414)
T PF02897_consen 402 DLATGELTLLK 412 (414)
T ss_dssp ETTTTCEEEEE
T ss_pred ECCCCCEEEEE
Confidence 88888776543
No 60
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=59.27 E-value=1.5e+02 Score=27.31 Aligned_cols=98 Identities=14% Similarity=0.165 Sum_probs=48.4
Q ss_pred EEEEecCCCceEEeeeeCCccceeeEEEE-CCEEEEEecCCCcEEEE-E--ecCCceeeeecCCCceeceeEEEEe--CC
Q 040662 173 ISICRPGDTTWTELRFQDNYRYVKNLVCA-DGFLYCSFFSLEAIVAY-N--VASQNLEILPYPPSILFMYKYLTEY--DG 246 (365)
Q Consensus 173 ~~~~~~g~~~W~~~~~~~~~~~~~~~v~~-~G~lY~~~l~~~g~i~~-d--~~~~~~~~i~~p~~~~~~~~~Lve~--~G 246 (365)
+...++|...|..+.... ......+.|. +|.++. +++.|.|.+ | -+.++|+.-..|.........-++. ++
T Consensus 168 ~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~--~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~ 244 (302)
T PF14870_consen 168 YSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWM--LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN 244 (302)
T ss_dssp EEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEE--EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS
T ss_pred EEEecCCCccceEEccCc-cceehhceecCCCCEEE--EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCC
Confidence 345577888999998753 2356677776 689988 888888874 4 2335786533333221121222222 46
Q ss_pred cEEEEEEEcCCCceEEEEeeCCCCCeEEeccC
Q 040662 247 SLLIFGKVVDGSGYRVFTFNRSQMDWFEIESL 278 (365)
Q Consensus 247 ~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~l 278 (365)
++.++.... .+++-....+.|.+....
T Consensus 245 ~~wa~gg~G-----~l~~S~DgGktW~~~~~~ 271 (302)
T PF14870_consen 245 EIWAVGGSG-----TLLVSTDGGKTWQKDRVG 271 (302)
T ss_dssp -EEEEESTT------EEEESSTTSS-EE-GGG
T ss_pred CEEEEeCCc-----cEEEeCCCCccceECccc
Confidence 777755432 566666678899997653
No 61
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=59.14 E-value=1.5e+02 Score=27.32 Aligned_cols=133 Identities=11% Similarity=0.013 Sum_probs=62.1
Q ss_pred ccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCc-eEEeeeeCCccceeeEE
Q 040662 121 SPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTT-WTELRFQDNYRYVKNLV 199 (365)
Q Consensus 121 ~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~-W~~~~~~~~~~~~~~~v 199 (365)
..+.+||..+|+.-..-++... .-.+...|....|+|.+ . ..+.+|..++.+ -+.+..|. ....+-
T Consensus 149 ~~lr~WNLV~Gr~a~v~~L~~~---at~v~w~~~Gd~F~v~~-~------~~i~i~q~d~A~v~~~i~~~~---r~l~~~ 215 (362)
T KOG0294|consen 149 QVLRTWNLVRGRVAFVLNLKNK---ATLVSWSPQGDHFVVSG-R------NKIDIYQLDNASVFREIENPK---RILCAT 215 (362)
T ss_pred ceeeeehhhcCccceeeccCCc---ceeeEEcCCCCEEEEEe-c------cEEEEEecccHhHhhhhhccc---cceeee
Confidence 4566777777765332222111 11234456544455543 2 367778777543 33333331 122334
Q ss_pred EECC-EEEEEecCCCcEEE-EEecCCc-eeeeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCC
Q 040662 200 CADG-FLYCSFFSLEAIVA-YNVASQN-LEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQM 270 (365)
Q Consensus 200 ~~~G-~lY~~~l~~~g~i~-~d~~~~~-~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~ 270 (365)
+.++ .+.+ -..++.|. +|.++.+ ...+...+- .....+.++-+..=++|.... ...+.||.+|.+++
T Consensus 216 ~l~~~~L~v--G~d~~~i~~~D~ds~~~~~~~~AH~~-RVK~i~~~~~~~~~~lvTaSS-DG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 216 FLDGSELLV--GGDNEWISLKDTDSDTPLTEFLAHEN-RVKDIASYTNPEHEYLVTASS-DGFIKVWDIDMETK 285 (362)
T ss_pred ecCCceEEE--ecCCceEEEeccCCCccceeeecchh-heeeeEEEecCCceEEEEecc-CceEEEEEcccccc
Confidence 4444 3322 22345666 7876532 111111111 122233333333345556655 46899999987654
No 62
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=56.62 E-value=1.3e+02 Score=26.08 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=51.7
Q ss_pred EEEEEEecCCCceEEeeeeCCccceeeEEEE--CCEEEEEecCCCcEEEEEecCCceeeeecCC-C--ceeceeEE-EEe
Q 040662 171 SCISICRPGDTTWTELRFQDNYRYVKNLVCA--DGFLYCSFFSLEAIVAYNVASQNLEILPYPP-S--ILFMYKYL-TEY 244 (365)
Q Consensus 171 ~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~--~G~lY~~~l~~~g~i~~d~~~~~~~~i~~p~-~--~~~~~~~L-ve~ 244 (365)
..+..+++.++.-+.+..+. ...+++. +|.+|+ -...+..++|+.+.+++.+...+ . ......-+ +..
T Consensus 22 ~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v--~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~ 95 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYV--ADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP 95 (246)
T ss_dssp TEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEE--EETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T
T ss_pred CEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEE--EEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC
Confidence 35666777766655555432 3344554 799988 76655544899888776554332 1 11122223 345
Q ss_pred CCcEEEEEEEcCC--Cc--eEEEEeeCC
Q 040662 245 DGSLLIFGKVVDG--SG--YRVFTFNRS 268 (365)
Q Consensus 245 ~G~L~lV~~~~~~--~~--~~V~~ld~~ 268 (365)
+|+|++-...... .. =.||+++..
T Consensus 96 ~G~ly~t~~~~~~~~~~~~g~v~~~~~~ 123 (246)
T PF08450_consen 96 DGNLYVTDSGGGGASGIDPGSVYRIDPD 123 (246)
T ss_dssp TS-EEEEEECCBCTTCGGSEEEEEEETT
T ss_pred CCCEEEEecCCCccccccccceEEECCC
Confidence 7997775544322 11 579999876
No 63
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=54.83 E-value=1.9e+02 Score=27.13 Aligned_cols=98 Identities=12% Similarity=0.101 Sum_probs=54.5
Q ss_pred CCeEEEeccccccCCCCccccEEEEcCCCCCee---eCCCCcccceeEEEEecCCC-CCCeEEEEEeCCCcCeEEEEEEe
Q 040662 102 HGWVLFEGEKNVNSGGRKCSPLFFYSPFADQII---NLPAWREFSIAKATFSATPI-SPDCVVFVTWVGIMEISCISICR 177 (365)
Q Consensus 102 ~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~---~LP~~~~~~~~~~~ls~~p~-s~~~~v~v~~~~~~~~~~~~~~~ 177 (365)
+|.+++.... +.++.+|+.||+.+ .++.. . ...|. .++. +++... ...+..++
T Consensus 65 ~~~v~v~~~~---------g~v~a~d~~tG~~~W~~~~~~~--~-------~~~p~v~~~~-v~v~~~----~g~l~ald 121 (377)
T TIGR03300 65 GGKVYAADAD---------GTVVALDAETGKRLWRVDLDER--L-------SGGVGADGGL-VFVGTE----KGEVIALD 121 (377)
T ss_pred CCEEEEECCC---------CeEEEEEccCCcEeeeecCCCC--c-------ccceEEcCCE-EEEEcC----CCEEEEEE
Confidence 6666666554 57889999999753 34432 1 11121 1222 223221 13455555
Q ss_pred c--CCCceEEeeeeCCccceeeEEEECCEEEEEecCCCcEEE-EEecCC--ceee
Q 040662 178 P--GDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVA-YNVASQ--NLEI 227 (365)
Q Consensus 178 ~--g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~--~~~~ 227 (365)
. |.-.|+.-... ......++.++.+|+ .+..|.+. +|+.+. .|+.
T Consensus 122 ~~tG~~~W~~~~~~---~~~~~p~v~~~~v~v--~~~~g~l~a~d~~tG~~~W~~ 171 (377)
T TIGR03300 122 AEDGKELWRAKLSS---EVLSPPLVANGLVVV--RTNDGRLTALDAATGERLWTY 171 (377)
T ss_pred CCCCcEeeeeccCc---eeecCCEEECCEEEE--ECCCCeEEEEEcCCCceeeEE
Confidence 4 55678754321 123345567888888 77778888 998664 4653
No 64
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.63 E-value=64 Score=30.14 Aligned_cols=18 Identities=17% Similarity=0.342 Sum_probs=15.0
Q ss_pred EEEEEEecCCCceEEeee
Q 040662 171 SCISICRPGDTTWTELRF 188 (365)
Q Consensus 171 ~~~~~~~~g~~~W~~~~~ 188 (365)
..+..|++.+++|..++.
T Consensus 113 nd~Y~y~p~~nsW~kl~t 130 (381)
T COG3055 113 NDAYRYDPSTNSWHKLDT 130 (381)
T ss_pred eeeEEecCCCChhheecc
Confidence 456788999999999885
No 65
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=53.61 E-value=10 Score=28.16 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.4
Q ss_pred CCCCCChHHHHHHHHhcCChhhhhh
Q 040662 15 GSWSDLPLEIINSIVSRLYVVYQIR 39 (365)
Q Consensus 15 ~~w~~LP~Dll~~Il~rLp~~~l~r 39 (365)
..|..||.|+-..||..|.-.|+..
T Consensus 70 ~~w~~LP~EIk~~Il~~L~~~dL~~ 94 (97)
T PF09372_consen 70 NYWNILPIEIKYKILEYLSNKDLKK 94 (97)
T ss_pred CchhhCCHHHHHHHHHcCCHHHHHH
Confidence 6799999999999999999887754
No 66
>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa.
Probab=53.23 E-value=1.1e+02 Score=23.91 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=44.6
Q ss_pred cCC-CcEEEEEecCC--ceeeeecCCCce------------eceeEEEEeCCcEEEEEEEcC--------CCceEEEEee
Q 040662 210 FSL-EAIVAYNVASQ--NLEILPYPPSIL------------FMYKYLTEYDGSLLIFGKVVD--------GSGYRVFTFN 266 (365)
Q Consensus 210 l~~-~g~i~~d~~~~--~~~~i~~p~~~~------------~~~~~Lve~~G~L~lV~~~~~--------~~~~~V~~ld 266 (365)
++. .|.+++|+..+ .++.|+.|.+.. .....+..++|.|-.|..... ...+..|.|.
T Consensus 2 VDl~~GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~ 81 (131)
T PF07762_consen 2 VDLWRGILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYRDVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLK 81 (131)
T ss_pred CcCCCCEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCceEEecCCCEEEEEEecccCCCcccCCcEEEEEEec
Confidence 444 36555787654 567787775320 112334457899999887643 2358899998
Q ss_pred C---CCCCeEEeccCC
Q 040662 267 R---SQMDWFEIESLD 279 (365)
Q Consensus 267 ~---~~~~W~~v~~lg 279 (365)
. ....|++-..+.
T Consensus 82 ~~~~~~~~W~~d~~v~ 97 (131)
T PF07762_consen 82 DPEGSSWEWKKDCEVD 97 (131)
T ss_pred cCCCCCCCEEEeEEEE
Confidence 8 468899866544
No 67
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=52.80 E-value=2e+02 Score=26.79 Aligned_cols=156 Identities=13% Similarity=0.189 Sum_probs=80.3
Q ss_pred cCCeEEEeccccccCCCCccccEEEEcC--CCCCe-----eeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEE
Q 040662 101 KHGWVLFEGEKNVNSGGRKCSPLFFYSP--FADQI-----INLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCI 173 (365)
Q Consensus 101 ~~G~l~~~~~~~~~~~~~~~~~~~l~NP--~T~~~-----~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~ 173 (365)
.+.+|++.+.. ...+++++- -+++. +.+|+-.. -+.+.| .|. +.+..++ .. ....+
T Consensus 154 dg~~v~v~dlG--------~D~v~~~~~~~~~~~l~~~~~~~~~~G~G--PRh~~f--~pd-g~~~Yv~-~e---~s~~v 216 (345)
T PF10282_consen 154 DGRFVYVPDLG--------ADRVYVYDIDDDTGKLTPVDSIKVPPGSG--PRHLAF--SPD-GKYAYVV-NE---LSNTV 216 (345)
T ss_dssp TSSEEEEEETT--------TTEEEEEEE-TTS-TEEEEEEEECSTTSS--EEEEEE---TT-SSEEEEE-ET---TTTEE
T ss_pred CCCEEEEEecC--------CCEEEEEEEeCCCceEEEeeccccccCCC--CcEEEE--cCC-cCEEEEe-cC---CCCcE
Confidence 35667776655 245555544 44333 23444311 133334 342 3444443 32 22345
Q ss_pred EEEec--CCCceEEeeee----CCc---cceeeEEEE-CCEE-EEEecCC-CcEEE-EEecC--CceeeeecCCCceece
Q 040662 174 SICRP--GDTTWTELRFQ----DNY---RYVKNLVCA-DGFL-YCSFFSL-EAIVA-YNVAS--QNLEILPYPPSILFMY 238 (365)
Q Consensus 174 ~~~~~--g~~~W~~~~~~----~~~---~~~~~~v~~-~G~l-Y~~~l~~-~g~i~-~d~~~--~~~~~i~~p~~~~~~~ 238 (365)
.+|+. .++.++.+..- ... .....+++. ||++ |+ -.+ ...|. |+++. ++.+.+..-+-.+...
T Consensus 217 ~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyv--snr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~P 294 (345)
T PF10282_consen 217 SVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYV--SNRGSNSISVFDLDPATGTLTLVQTVPTGGKFP 294 (345)
T ss_dssp EEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEE--EECTTTEEEEEEECTTTTTEEEEEEEEESSSSE
T ss_pred EEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEE--EeccCCEEEEEEEecCCCceEEEEEEeCCCCCc
Confidence 55544 46677766532 111 134566666 6764 55 444 35677 88843 3555544322112222
Q ss_pred eEEEE-eCCcEEEEEEEcCCCceEEEEeeCCCCCeEEec
Q 040662 239 KYLTE-YDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIE 276 (365)
Q Consensus 239 ~~Lve-~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~ 276 (365)
..+.. -+|+.++|.... ...+.||++|.+++.+..+.
T Consensus 295 r~~~~s~~g~~l~Va~~~-s~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 295 RHFAFSPDGRYLYVANQD-SNTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp EEEEE-TTSSEEEEEETT-TTEEEEEEEETTTTEEEEEE
T ss_pred cEEEEeCCCCEEEEEecC-CCeEEEEEEeCCCCcEEEec
Confidence 33333 478888876544 56799999998888888775
No 68
>PTZ00334 trans-sialidase; Provisional
Probab=51.18 E-value=50 Score=34.43 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=39.8
Q ss_pred EEecCCceeeeecCCCceeceeEEEEeC-CcEEEEEEEcCCCceEEEEeeCCCCCeEE
Q 040662 218 YNVASQNLEILPYPPSILFMYKYLTEYD-GSLLIFGKVVDGSGYRVFTFNRSQMDWFE 274 (365)
Q Consensus 218 ~d~~~~~~~~i~~p~~~~~~~~~Lve~~-G~L~lV~~~~~~~~~~V~~ld~~~~~W~~ 274 (365)
|-.++.+|.+-...++.++..+.++|.+ |+|+|+..+.+ .+-+||+-...+..|.+
T Consensus 292 YS~d~g~W~ls~g~s~~gC~~P~I~EWe~gkLlM~t~C~d-G~RrVYES~DmG~tWtE 348 (780)
T PTZ00334 292 YSSATESGNLSKGMSADGCSDPSVVEWKEGKLMMMTACDD-GRRRVYESGDKGDSWTE 348 (780)
T ss_pred EecCCCCeEEcCCCCCCCCCCCEEEEEcCCeEEEEEEeCC-CCEEEEEECCCCCChhh
Confidence 5445557865333334456778899995 99999998863 34589999877788886
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=49.86 E-value=2.5e+02 Score=27.11 Aligned_cols=81 Identities=19% Similarity=0.356 Sum_probs=48.2
Q ss_pred eeeEEEE-CCEEEEEecC-CCcEEE-EEecCC-ceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCC
Q 040662 195 VKNLVCA-DGFLYCSFFS-LEAIVA-YNVASQ-NLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQM 270 (365)
Q Consensus 195 ~~~~v~~-~G~lY~~~l~-~~g~i~-~d~~~~-~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~ 270 (365)
...+.|. ||..-+ .. .++.|. +|+... .+..++.+.... ...+-..-.|..+.+. +..+.||..+..++
T Consensus 392 vk~i~FsENGY~La--t~add~~V~lwDLRKl~n~kt~~l~~~~~-v~s~~fD~SGt~L~~~----g~~l~Vy~~~k~~k 464 (506)
T KOG0289|consen 392 VKAISFSENGYWLA--TAADDGSVKLWDLRKLKNFKTIQLDEKKE-VNSLSFDQSGTYLGIA----GSDLQVYICKKKTK 464 (506)
T ss_pred eeEEEeccCceEEE--EEecCCeEEEEEehhhcccceeecccccc-ceeEEEcCCCCeEEee----cceeEEEEEecccc
Confidence 4566666 454333 33 356677 999753 455555433211 1112222247766655 35789999998899
Q ss_pred CeEEeccCCCeE
Q 040662 271 DWFEIESLDDRV 282 (365)
Q Consensus 271 ~W~~v~~lg~~~ 282 (365)
.|.++..+.++.
T Consensus 465 ~W~~~~~~~~~s 476 (506)
T KOG0289|consen 465 SWTEIKELADHS 476 (506)
T ss_pred cceeeehhhhcc
Confidence 999999877653
No 70
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=48.79 E-value=2.4e+02 Score=26.67 Aligned_cols=23 Identities=22% Similarity=0.056 Sum_probs=17.8
Q ss_pred CCeEEEeccccccCCCCccccEEEEcCCCCCe
Q 040662 102 HGWVLFEGEKNVNSGGRKCSPLFFYSPFADQI 133 (365)
Q Consensus 102 ~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~ 133 (365)
+|.|++.... +.++.+|+.||+.
T Consensus 256 ~~~vy~~~~~---------g~l~ald~~tG~~ 278 (394)
T PRK11138 256 GGVVYALAYN---------GNLVALDLRSGQI 278 (394)
T ss_pred CCEEEEEEcC---------CeEEEEECCCCCE
Confidence 7777777654 6789999999873
No 71
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=42.41 E-value=2.8e+02 Score=25.69 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=44.3
Q ss_pred ecCCCceEEeeeeCCccceeeEEE--ECCEEEEEecCC----CcEEE-EEecCC--ceeeeecCCCceeceeEEEEe-CC
Q 040662 177 RPGDTTWTELRFQDNYRYVKNLVC--ADGFLYCSFFSL----EAIVA-YNVASQ--NLEILPYPPSILFMYKYLTEY-DG 246 (365)
Q Consensus 177 ~~g~~~W~~~~~~~~~~~~~~~v~--~~G~lY~~~l~~----~g~i~-~d~~~~--~~~~i~~p~~~~~~~~~Lve~-~G 246 (365)
+..+++++.+..-.......-+++ -+..||+ .+. .|.|. |+++.+ +.+.+...+..+....++... +|
T Consensus 21 d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~--~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g 98 (345)
T PF10282_consen 21 DEETGTLTLVQTVAEGENPSWLAVSPDGRRLYV--VNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDG 98 (345)
T ss_dssp ETTTTEEEEEEEEEESSSECCEEE-TTSSEEEE--EETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTS
T ss_pred cCCCCCceEeeeecCCCCCceEEEEeCCCEEEE--EEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCC
Confidence 446777777664211122333444 4678999 765 36777 887654 565554322122222344332 45
Q ss_pred cEEEEEEEcCCCceEEEEeeC
Q 040662 247 SLLIFGKVVDGSGYRVFTFNR 267 (365)
Q Consensus 247 ~L~lV~~~~~~~~~~V~~ld~ 267 (365)
+.++|..+. ...+.++.++.
T Consensus 99 ~~l~vany~-~g~v~v~~l~~ 118 (345)
T PF10282_consen 99 RFLYVANYG-GGSVSVFPLDD 118 (345)
T ss_dssp SEEEEEETT-TTEEEEEEECT
T ss_pred CEEEEEEcc-CCeEEEEEccC
Confidence 555544433 33445555543
No 72
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=41.08 E-value=3e+02 Score=25.65 Aligned_cols=49 Identities=12% Similarity=0.117 Sum_probs=31.7
Q ss_pred EEEEEecC--CCceEEeeeeCCccceeeEEEECCEEEEEecCCCcEEE-EEecCC--ceee
Q 040662 172 CISICRPG--DTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVA-YNVASQ--NLEI 227 (365)
Q Consensus 172 ~~~~~~~g--~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~--~~~~ 227 (365)
.+..++.. ...|+.-. ......+..+|.+|+ .+.+|.+. +|..+. .|+.
T Consensus 252 ~l~a~d~~tG~~~W~~~~-----~~~~~p~~~~~~vyv--~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 252 RVAALDLRSGRVLWKRDA-----SSYQGPAVDDNRLYV--TDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEEEECCCCcEEEeecc-----CCccCceEeCCEEEE--ECCCCeEEEEECCCCcEEEcc
Confidence 45555543 44676531 123355678999999 88889998 998764 3543
No 73
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=40.82 E-value=3.1e+02 Score=25.63 Aligned_cols=128 Identities=13% Similarity=0.046 Sum_probs=66.7
Q ss_pred eeeEEEECC--EEEEEecCC---CcEEE-EEec--CCceeeeecCCCceeceeEEEEe-CCcEEEEEEEcCCCceEEEEe
Q 040662 195 VKNLVCADG--FLYCSFFSL---EAIVA-YNVA--SQNLEILPYPPSILFMYKYLTEY-DGSLLIFGKVVDGSGYRVFTF 265 (365)
Q Consensus 195 ~~~~v~~~G--~lY~~~l~~---~g~i~-~d~~--~~~~~~i~~p~~~~~~~~~Lve~-~G~L~lV~~~~~~~~~~V~~l 265 (365)
...+++... .||. +.. .|.|+ |.++ ++..+.+..-...+....|+-.. +|+.+++..+. ...+.|+.+
T Consensus 42 ptyl~~~~~~~~LY~--v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~-~g~v~v~p~ 118 (346)
T COG2706 42 PTYLAVNPDQRHLYV--VNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYH-SGSVSVYPL 118 (346)
T ss_pred CceEEECCCCCEEEE--EEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEcc-CceEEEEEc
Confidence 344455533 5888 754 35566 6554 35676665432222222566554 58877777665 578999999
Q ss_pred eCCCCCeEEeccC---CC--eEEEeccCCCCCCC--CCCeEEEeeeCCCceEEEEcCceeeeecccc
Q 040662 266 NRSQMDWFEIESL---DD--RVLFTGASCLWVPV--EKGSAFANTVHWFGRYSYIRDVCREFIRKPV 325 (365)
Q Consensus 266 d~~~~~W~~v~~l---g~--~~lfvg~~~~~~~~--~~n~IYf~~~~~~~~~vy~l~~~~~~~~~~~ 325 (365)
+.++.-|..+..+ |. +.=--..+|....+ .++.|...+=+-....+|++++|++.+..+-
T Consensus 119 ~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~ 185 (346)
T COG2706 119 QADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPA 185 (346)
T ss_pred ccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccccc
Confidence 8776555544322 21 10000001100123 4445555443322346788888877765443
No 74
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=37.96 E-value=4e+02 Score=26.15 Aligned_cols=136 Identities=13% Similarity=0.157 Sum_probs=61.5
Q ss_pred ccEEEEcCCCCCe----eeCCCCccccee------EEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeC
Q 040662 121 SPLFFYSPFADQI----INLPAWREFSIA------KATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQD 190 (365)
Q Consensus 121 ~~~~l~NP~T~~~----~~LP~~~~~~~~------~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~ 190 (365)
+.++++||.|... +-||-.+.--.. +..=.+++.+++++++|+.+ +..+.++.++-=..+..+.
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG------kaFi~~~~~~~~iqv~~~~ 360 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG------KAFIMRPWDGYSIQVGKKG 360 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC------cEEEECCCCCeeEEcCCCC
Confidence 6899999999865 334543211000 11011345567888887653 4444454443322222221
Q ss_pred CccceeeEEEECCEEEEEecCCCc-EEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCC
Q 040662 191 NYRYVKNLVCADGFLYCSFFSLEA-IVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRS 268 (365)
Q Consensus 191 ~~~~~~~~v~~~G~lY~~~l~~~g-~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~ 268 (365)
.+. +...-..+..+-. -+.+| .+. ||.++.....+..+... ....-|.-+|+-.+|.. ..+++|..|.+
T Consensus 361 ~Vr-Y~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~--I~av~vs~dGK~~vvaN----dr~el~vidid 431 (668)
T COG4946 361 GVR-YRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGN--IEAVKVSPDGKKVVVAN----DRFELWVIDID 431 (668)
T ss_pred ceE-EEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccc--eEEEEEcCCCcEEEEEc----CceEEEEEEec
Confidence 111 1111111222211 33445 566 88877655555433322 11111222455444332 24667777665
Q ss_pred CCC
Q 040662 269 QMD 271 (365)
Q Consensus 269 ~~~ 271 (365)
...
T Consensus 432 ngn 434 (668)
T COG4946 432 NGN 434 (668)
T ss_pred CCC
Confidence 544
No 75
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.44 E-value=2e+02 Score=27.01 Aligned_cols=81 Identities=10% Similarity=0.126 Sum_probs=50.6
Q ss_pred eEEEECCEEEEEecCCCc-EEE-EEecC--CceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC------CceEEEEee
Q 040662 197 NLVCADGFLYCSFFSLEA-IVA-YNVAS--QNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG------SGYRVFTFN 266 (365)
Q Consensus 197 ~~v~~~G~lY~~~l~~~g-~i~-~d~~~--~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~------~~~~V~~ld 266 (365)
..+..+..+|+ -|...| ... +|+.. ..|+.++.=|........-+.++|+|++....... ..-.+|++|
T Consensus 41 ~Ga~ig~~~YV-GLGs~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~ 119 (381)
T COG3055 41 AGALIGDTVYV-GLGSAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYD 119 (381)
T ss_pred ccceecceEEE-EeccCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEec
Confidence 34455567776 244433 333 67654 36887765332222444445579999998866432 234689999
Q ss_pred CCCCCeEEeccC
Q 040662 267 RSQMDWFEIESL 278 (365)
Q Consensus 267 ~~~~~W~~v~~l 278 (365)
....+|.++++.
T Consensus 120 p~~nsW~kl~t~ 131 (381)
T COG3055 120 PSTNSWHKLDTR 131 (381)
T ss_pred CCCChhheeccc
Confidence 999999998765
No 76
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=34.44 E-value=72 Score=18.76 Aligned_cols=19 Identities=11% Similarity=0.203 Sum_probs=12.1
Q ss_pred CEEEEEecCCCcEEE-EEecCC
Q 040662 203 GFLYCSFFSLEAIVA-YNVASQ 223 (365)
Q Consensus 203 G~lY~~~l~~~g~i~-~d~~~~ 223 (365)
|++|+ -+..|.+. +|..++
T Consensus 1 ~~v~~--~~~~g~l~AlD~~TG 20 (38)
T PF01011_consen 1 GRVYV--GTPDGYLYALDAKTG 20 (38)
T ss_dssp TEEEE--ETTTSEEEEEETTTT
T ss_pred CEEEE--eCCCCEEEEEECCCC
Confidence 45666 55567776 777665
No 77
>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection. They are also essential dietary nutrients in animals. Carotenoid oxygenases cleave a variety of carotenoids into a range of biologically important products, including apocarotenoids in plants that function as hormones, pigments, flavours, floral scents and defence compounds, and retinoids in animals that function as vitamins, visual pigments and signalling molecules []. Examples of carotenoid oxygenases include: Beta-carotene-15,15'-monooxygenase (BCDO1; 1.14.99.36 from EC) from animals, which cleaves beta-carotene symmetrically at the central double bond to yield two molecules of retinal []. Beta-carotene-9',10'-dioxygenase (BCDO2) from animals, which cleaves beta-carotene asymmetrically to apo-10'-beta-carotenal and beta-ionone, the latter being converted to retinoic acid. Lycopene is also oxidatively cleaved []. 9-cis-epoxycarotenoid dioxygenase from plants, which cleaves 9-cis xanthophylls to xanthoxin, a precursor of the hormone abscisic acid []. Apocarotenoid-15,15'-oxygenase from bacteria and cyanobacteria, which converts beta-apocarotenals rather than beta-carotene into retinal. This protein has a seven-bladed beta-propeller structure with four hisitidines that hold the iron active centre []. Retinal pigment RPE65 from animals, which in its soluble form binds all-trans retinol, and in its membrane-bound form binds all-trans retinyl esters. RPE65 is important for the production of 11-cis retinal during visual pigment regeneration []. ; PDB: 3NPE_A 2BIX_B 2BIW_A 3KVC_B 3FSN_B.
Probab=34.27 E-value=2.8e+02 Score=27.28 Aligned_cols=73 Identities=14% Similarity=0.128 Sum_probs=43.5
Q ss_pred eeeEEEECCEEEEEecCCCcEEE-EEecCC-ceeeeecC--CC-ceeceeEEEE-eCCcEEEEEEEcCC---CceEEEEe
Q 040662 195 VKNLVCADGFLYCSFFSLEAIVA-YNVASQ-NLEILPYP--PS-ILFMYKYLTE-YDGSLLIFGKVVDG---SGYRVFTF 265 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~-~~~~i~~p--~~-~~~~~~~Lve-~~G~L~lV~~~~~~---~~~~V~~l 265 (365)
-.+++.++|+||+ +...|... +|+.+- |....... .. .......-+. ..|+|+.+...... ..+.+|++
T Consensus 123 Nt~v~~~~g~llA--l~E~g~p~~lDp~TLeT~g~~~~~~~l~~~~~tAHp~~Dp~tg~l~~~~~~~~~~~~~~~~~~~~ 200 (486)
T PF03055_consen 123 NTNVIPHGGRLLA--LWEGGPPYELDPDTLETLGPFDFDGKLPGQPFTAHPKIDPETGELYNFGYSLGPEGSPKLTVYEI 200 (486)
T ss_dssp -SEEEEETTEEEE--E-TTSEEEEEETTTCEEEEEEEGGGTSSTS---S--EEETTTTTEEEEEEECSSTTSEEEEEEEE
T ss_pred eeeeEEECCEEEE--EEcCCCCEEechhHhhhcCcccccccccCcccccCceEcccCCcEEEEEEEeccCCCCcEEEEEE
Confidence 3578899999999 98889888 998653 33222211 11 1111122233 57999998886422 46889999
Q ss_pred eCCC
Q 040662 266 NRSQ 269 (365)
Q Consensus 266 d~~~ 269 (365)
|.+.
T Consensus 201 ~~~g 204 (486)
T PF03055_consen 201 DPDG 204 (486)
T ss_dssp -TTS
T ss_pred cCcc
Confidence 8765
No 78
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=33.43 E-value=2.7e+02 Score=25.62 Aligned_cols=92 Identities=12% Similarity=0.171 Sum_probs=42.6
Q ss_pred cCCCceEEeeeeCCc---cceeeEEEECCEEEEEecCCCcEEE-EEecCCceeeeecCCCceeceeEEEEe-CCcEEEEE
Q 040662 178 PGDTTWTELRFQDNY---RYVKNLVCADGFLYCSFFSLEAIVA-YNVASQNLEILPYPPSILFMYKYLTEY-DGSLLIFG 252 (365)
Q Consensus 178 ~g~~~W~~~~~~~~~---~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~-~G~L~lV~ 252 (365)
-|-.+|.....+... .....+.+.+...|+ +...|.|+ -.=...+|+.++.+.+.......+... ++...++.
T Consensus 44 DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~i--vG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~ 121 (302)
T PF14870_consen 44 DGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWI--VGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAG 121 (302)
T ss_dssp STTSS-EE-----S-----EEEEEEEETTEEEE--EEETTEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEE
T ss_pred CCCccccccccCCCccceeeEEEEEecCCceEE--EcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEc
Confidence 355789988754221 234566667778887 87777665 322446899887543211111222232 44444443
Q ss_pred EEcCCCceEEEEeeCCCCCeEEec
Q 040662 253 KVVDGSGYRVFTFNRSQMDWFEIE 276 (365)
Q Consensus 253 ~~~~~~~~~V~~ld~~~~~W~~v~ 276 (365)
. .=.||+=......|..+.
T Consensus 122 ~-----~G~iy~T~DgG~tW~~~~ 140 (302)
T PF14870_consen 122 D-----RGAIYRTTDGGKTWQAVV 140 (302)
T ss_dssp T-----T--EEEESSTTSSEEEEE
T ss_pred C-----CCcEEEeCCCCCCeeEcc
Confidence 2 235777766667777754
No 79
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.41 E-value=1.7e+02 Score=29.67 Aligned_cols=62 Identities=15% Similarity=0.071 Sum_probs=39.0
Q ss_pred CEEEEEecCCCcEEE-EEecCCceee----eecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeC
Q 040662 203 GFLYCSFFSLEAIVA-YNVASQNLEI----LPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNR 267 (365)
Q Consensus 203 G~lY~~~l~~~g~i~-~d~~~~~~~~----i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~ 267 (365)
-+||. .+..|.|. ||.....++. +-.|+-.......|+=..|+.++|.... +..+++|.++.
T Consensus 65 HiLav--adE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-DsT~r~Wdvk~ 131 (720)
T KOG0321|consen 65 HILAV--ADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-DSTIRPWDVKT 131 (720)
T ss_pred ceEEE--ecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC-Cceeeeeeecc
Confidence 46888 77888777 9987766651 1112221112223333359999999886 56789998864
No 80
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=32.95 E-value=3.5e+02 Score=24.02 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=45.4
Q ss_pred eeeEEEECCEEEEEecCCCcEEE-EEecCCcee-eeecCC-------Cc---eeceeEEEEeCCcEEEEEEEcCCC-ceE
Q 040662 195 VKNLVCADGFLYCSFFSLEAIVA-YNVASQNLE-ILPYPP-------SI---LFMYKYLTEYDGSLLIFGKVVDGS-GYR 261 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~~~-~i~~p~-------~~---~~~~~~Lve~~G~L~lV~~~~~~~-~~~ 261 (365)
....|+.||.||.| -.....|+ ||+.+++.. ....|- +. .....-|..-+..|.++-...+.. .+.
T Consensus 71 GtG~vVYngslYY~-~~~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~iv 149 (250)
T PF02191_consen 71 GTGHVVYNGSLYYN-KYNSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIV 149 (250)
T ss_pred cCCeEEECCcEEEE-ecCCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEE
Confidence 34567799999884 22346788 999887544 222221 11 122334444466788877665443 589
Q ss_pred EEEeeCCC
Q 040662 262 VFTFNRSQ 269 (365)
Q Consensus 262 V~~ld~~~ 269 (365)
|-+||.+.
T Consensus 150 vskld~~t 157 (250)
T PF02191_consen 150 VSKLDPET 157 (250)
T ss_pred EEeeCccc
Confidence 99999764
No 81
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=32.92 E-value=4.1e+02 Score=24.77 Aligned_cols=120 Identities=9% Similarity=0.065 Sum_probs=67.6
Q ss_pred ECCEEEEEecCCCcEEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCC--C------ceEEEEeeC----
Q 040662 201 ADGFLYCSFFSLEAIVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDG--S------GYRVFTFNR---- 267 (365)
Q Consensus 201 ~~G~lY~~~l~~~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~--~------~~~V~~ld~---- 267 (365)
.+.++.+ ++..|.++ ||.++......+.... .......+.-+|+|++....... . .+++...+.
T Consensus 75 ~gskIv~--~d~~~~t~vyDt~t~av~~~P~l~~-pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~ 151 (342)
T PF07893_consen 75 HGSKIVA--VDQSGRTLVYDTDTRAVATGPRLHS-PKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDD 151 (342)
T ss_pred cCCeEEE--EcCCCCeEEEECCCCeEeccCCCCC-CCcceEEEEeCCeEEEeeccCccccccCccceeEEEecccccccc
Confidence 5788877 88877777 9998775543332111 11223445558888887766321 1 666665441
Q ss_pred ----CCCCeEEeccCCCeEEEeccCC------CCCCCC-CCeEEEeeeC-CCceEEEEcCceeeeecccccC
Q 040662 268 ----SQMDWFEIESLDDRVLFTGASC------LWVPVE-KGSAFANTVH-WFGRYSYIRDVCREFIRKPVES 327 (365)
Q Consensus 268 ----~~~~W~~v~~lg~~~lfvg~~~------~~~~~~-~n~IYf~~~~-~~~~~vy~l~~~~~~~~~~~~~ 327 (365)
..-.|..+-.-+ |....- ..+.+. |..|++...+ ..|...||.++++|+..-++.+
T Consensus 152 ~~~~~~w~W~~LP~PP----f~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~L 219 (342)
T PF07893_consen 152 PSPEESWSWRSLPPPP----FVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWML 219 (342)
T ss_pred ccCCCcceEEcCCCCC----ccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceec
Confidence 123566644322 333221 112233 7888875532 1256788888888887766654
No 82
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=32.51 E-value=3.9e+02 Score=24.37 Aligned_cols=211 Identities=14% Similarity=0.080 Sum_probs=104.0
Q ss_pred EcCCCCceEEEecCCCCCCCC-CCC-eEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCcccceeEE-E
Q 040662 72 YDPCHKQKYTVFNSDKNRTTL-LGA-RPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWREFSIAKA-T 148 (365)
Q Consensus 72 ~~~~~~~~~~~~l~~~~~P~~-~~~-~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~~~~~~~~-~ 148 (365)
.||.+++..+.+| +.- +.+ .++|.. |=.-+++.. ..+.=++|-|.+..++|-..+..+... .
T Consensus 88 LdP~tGev~~ypL-----g~Ga~Phgiv~gpd-g~~Witd~~---------~aI~R~dpkt~evt~f~lp~~~a~~nlet 152 (353)
T COG4257 88 LDPATGEVETYPL-----GSGASPHGIVVGPD-GSAWITDTG---------LAIGRLDPKTLEVTRFPLPLEHADANLET 152 (353)
T ss_pred cCCCCCceEEEec-----CCCCCCceEEECCC-CCeeEecCc---------ceeEEecCcccceEEeecccccCCCcccc
Confidence 4888888877777 331 112 334443 444445554 378889999988765544323322111 1
Q ss_pred EecCCCCCCeEEEEEe-CCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEEECCEEEEEecCCCc-EEE-EEecCCce
Q 040662 149 FSATPISPDCVVFVTW-VGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVCADGFLYCSFFSLEA-IVA-YNVASQNL 225 (365)
Q Consensus 149 ls~~p~s~~~~v~v~~-~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~~G~lY~~~l~~~g-~i~-~d~~~~~~ 225 (365)
..+|+ .-.+..+. .+ ... -.++..+.=+..+.|....-+.-++--||.+|. -+..| .|+ +|+....-
T Consensus 153 ~vfD~---~G~lWFt~q~G--~yG---rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwy--aslagnaiaridp~~~~a 222 (353)
T COG4257 153 AVFDP---WGNLWFTGQIG--AYG---RLDPARNVISVFPAPQGGGPYGICATPDGSVWY--ASLAGNAIARIDPFAGHA 222 (353)
T ss_pred eeeCC---CccEEEeeccc--cce---ecCcccCceeeeccCCCCCCcceEECCCCcEEE--EeccccceEEcccccCCc
Confidence 12233 12222211 11 011 112223332333333111112223445899987 66554 567 99877655
Q ss_pred eeeecCCCc-eeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEec--cCC--CeEEEeccCCCCCCCCCCeEE
Q 040662 226 EILPYPPSI-LFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIE--SLD--DRVLFTGASCLWVPVEKGSAF 300 (365)
Q Consensus 226 ~~i~~p~~~-~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~--~lg--~~~lfvg~~~~~~~~~~n~IY 300 (365)
++++.|-.. ...+.--+...|++.+-.. ..-+++++|.....|.+-. ..+ ...+||+ ..+.|.
T Consensus 223 ev~p~P~~~~~gsRriwsdpig~~wittw----g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD--------~~grVW 290 (353)
T COG4257 223 EVVPQPNALKAGSRRIWSDPIGRAWITTW----GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVD--------RHGRVW 290 (353)
T ss_pred ceecCCCcccccccccccCccCcEEEecc----CCceeeEeCcccccceeeeCCCCCCCcceeeec--------cCCcEE
Confidence 566655442 1222333445677766432 2346778887777788754 222 2456766 345666
Q ss_pred EeeeCCCceEEEEcCceee
Q 040662 301 ANTVHWFGRYSYIRDVCRE 319 (365)
Q Consensus 301 f~~~~~~~~~vy~l~~~~~ 319 (365)
+.+..-+...-||.++-++
T Consensus 291 ~sea~agai~rfdpeta~f 309 (353)
T COG4257 291 LSEADAGAIGRFDPETARF 309 (353)
T ss_pred eeccccCceeecCcccceE
Confidence 6553322234455554443
No 83
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases.
Probab=31.48 E-value=1.7e+02 Score=27.09 Aligned_cols=62 Identities=13% Similarity=0.085 Sum_probs=41.0
Q ss_pred EecCCceeeeecCCC-ceeceeEEEEe-CCcEEEEEEEcCCCceEEEEeeCCCCCeEEeccCCC
Q 040662 219 NVASQNLEILPYPPS-ILFMYKYLTEY-DGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLDD 280 (365)
Q Consensus 219 d~~~~~~~~i~~p~~-~~~~~~~Lve~-~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~lg~ 280 (365)
|-...+|+....... .......++|. +|+|+++.+........+++-+..+..|.+......
T Consensus 180 ~D~G~tW~~~~~~~~~~~~~e~~i~el~dG~l~~~~R~~~~~~~~~~~S~D~G~tWs~~~~~~~ 243 (351)
T cd00260 180 DDSGKTWKLGEGVNDAGGCSECSVVELSDGKLYMYTRDNSGGRRPVYESRDMGTTWTEALGTLS 243 (351)
T ss_pred CCCCCCcEECCCCCCCCCCcCCEEEEecCCEEEEEEeeCCCCcEEEEEEcCCCcCcccCcCCcc
Confidence 334468976443333 33455678887 899999888763345667777667789998775543
No 84
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=30.03 E-value=4.3e+02 Score=24.08 Aligned_cols=147 Identities=9% Similarity=0.131 Sum_probs=71.8
Q ss_pred ccEEEEcCCCCCe---eeCCCCcccceeEEEEecCCC---CCCeEEE-EEe--CCC-cCe-EEEEEEecCCC-----ceE
Q 040662 121 SPLFFYSPFADQI---INLPAWREFSIAKATFSATPI---SPDCVVF-VTW--VGI-MEI-SCISICRPGDT-----TWT 184 (365)
Q Consensus 121 ~~~~l~NP~T~~~---~~LP~~~~~~~~~~~ls~~p~---s~~~~v~-v~~--~~~-~~~-~~~~~~~~g~~-----~W~ 184 (365)
+.+.|+||.|.+. +.|++- +.......+..... ...|+|+ ... ..+ ... ..+.+|+.... +.+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~-E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPN-EHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETT-EEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCC-ceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEE
Confidence 4678999998875 456665 44333223332221 1345555 222 111 122 77888887764 444
Q ss_pred EeeeeCCccceeeEEEECCEEEEEecCCCcEEE-EEecCCc-eeeeecC-CCceeceeEEEEeCCcEEEEEEEcCCCceE
Q 040662 185 ELRFQDNYRYVKNLVCADGFLYCSFFSLEAIVA-YNVASQN-LEILPYP-PSILFMYKYLTEYDGSLLIFGKVVDGSGYR 261 (365)
Q Consensus 185 ~~~~~~~~~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~-~~~i~~p-~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~ 261 (365)
.+.....-.....+..++|++. ++....|. +++.... +.....- .+. ....+... |..++|+-. ..++.
T Consensus 81 ~i~~~~~~g~V~ai~~~~~~lv---~~~g~~l~v~~l~~~~~l~~~~~~~~~~--~i~sl~~~-~~~I~vgD~--~~sv~ 152 (321)
T PF03178_consen 81 LIHSTEVKGPVTAICSFNGRLV---VAVGNKLYVYDLDNSKTLLKKAFYDSPF--YITSLSVF-KNYILVGDA--MKSVS 152 (321)
T ss_dssp EEEEEEESS-EEEEEEETTEEE---EEETTEEEEEEEETTSSEEEEEEE-BSS--SEEEEEEE-TTEEEEEES--SSSEE
T ss_pred EEEEEeecCcceEhhhhCCEEE---EeecCEEEEEEccCcccchhhheecceE--EEEEEecc-ccEEEEEEc--ccCEE
Confidence 4432111113556677788853 34445666 8887766 4332211 111 11222222 444444433 25677
Q ss_pred EEEeeCCCCCeEEec
Q 040662 262 VFTFNRSQMDWFEIE 276 (365)
Q Consensus 262 V~~ld~~~~~W~~v~ 276 (365)
+++++.+..+-.++.
T Consensus 153 ~~~~~~~~~~l~~va 167 (321)
T PF03178_consen 153 LLRYDEENNKLILVA 167 (321)
T ss_dssp EEEEETTTE-EEEEE
T ss_pred EEEEEccCCEEEEEE
Confidence 777776444444443
No 85
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=29.48 E-value=5.6e+02 Score=25.23 Aligned_cols=139 Identities=10% Similarity=0.126 Sum_probs=73.3
Q ss_pred CceEEEcCCCCceEEEecCC--CCCCCCCCC-------eEEE-ccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeC
Q 040662 67 HSCYLYDPCHKQKYTVFNSD--KNRTTLLGA-------RPLD-SKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINL 136 (365)
Q Consensus 67 ~~~~~~~~~~~~~~~~~l~~--~~~P~~~~~-------~~~~-s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~L 136 (365)
++..+|||.+.+...+.+.. ...+.++.. .-.+ +.+-.+.+... +..++.||.-+..+++
T Consensus 287 GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR----------GkaFi~~~~~~~~iqv 356 (668)
T COG4946 287 GDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR----------GKAFIMRPWDGYSIQV 356 (668)
T ss_pred CcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec----------CcEEEECCCCCeeEEc
Confidence 56789999988766655321 001211110 1012 23455555544 5799999999999999
Q ss_pred CCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeE-EEECCEEEEEecCC-Cc
Q 040662 137 PAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNL-VCADGFLYCSFFSL-EA 214 (365)
Q Consensus 137 P~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~-v~~~G~lY~~~l~~-~g 214 (365)
+..-...|.+ ++.++ + .+++... ....+.+|+.+++.-+.+..+ ...+..+ +--+|+.-+ +.. ..
T Consensus 357 ~~~~~VrY~r--~~~~~---e-~~vigt~---dgD~l~iyd~~~~e~kr~e~~--lg~I~av~vs~dGK~~v--vaNdr~ 423 (668)
T COG4946 357 GKKGGVRYRR--IQVDP---E-GDVIGTN---DGDKLGIYDKDGGEVKRIEKD--LGNIEAVKVSPDGKKVV--VANDRF 423 (668)
T ss_pred CCCCceEEEE--EccCC---c-ceEEecc---CCceEEEEecCCceEEEeeCC--ccceEEEEEcCCCcEEE--EEcCce
Confidence 9764444443 34444 2 2222221 234778888888776666543 1112222 222555433 333 34
Q ss_pred EEE-EEecCCceeee
Q 040662 215 IVA-YNVASQNLEIL 228 (365)
Q Consensus 215 ~i~-~d~~~~~~~~i 228 (365)
.+. +|+++++-++|
T Consensus 424 el~vididngnv~~i 438 (668)
T COG4946 424 ELWVIDIDNGNVRLI 438 (668)
T ss_pred EEEEEEecCCCeeEe
Confidence 555 66655544433
No 86
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=29.46 E-value=3.7e+02 Score=23.21 Aligned_cols=198 Identities=16% Similarity=0.185 Sum_probs=94.0
Q ss_pred EEEcCCCCceEEEecCCCCCCCCCCCeEEEccCCeEEEeccccccCCCCccccEEEEcCCCCCeeeCCCCc----cc-ce
Q 040662 70 YLYDPCHKQKYTVFNSDKNRTTLLGARPLDSKHGWVLFEGEKNVNSGGRKCSPLFFYSPFADQIINLPAWR----EF-SI 144 (365)
Q Consensus 70 ~~~~~~~~~~~~~~l~~~~~P~~~~~~~~~s~~G~l~~~~~~~~~~~~~~~~~~~l~NP~T~~~~~LP~~~----~~-~~ 144 (365)
.-+++.+++...+.+ |. +....+...+|-++++... ...++||.|++...+-... .. ..
T Consensus 25 ~~~~~~~~~~~~~~~-----~~-~~G~~~~~~~g~l~v~~~~----------~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 25 YRVDPDTGEVEVIDL-----PG-PNGMAFDRPDGRLYVADSG----------GIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp EEEETTTTEEEEEES-----SS-EEEEEEECTTSEEEEEETT----------CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred EEEECCCCeEEEEec-----CC-CceEEEEccCCEEEEEEcC----------ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 345555554444444 33 1122233356877777664 4566699999765443221 11 11
Q ss_pred eEEEEecCCCCCCeEEEEEeCC-CcCe--EEEEEEecCCCceEEeeeeCCccceeeEEEE-CC-EEEEEecCC-CcEEE-
Q 040662 145 AKATFSATPISPDCVVFVTWVG-IMEI--SCISICRPGDTTWTELRFQDNYRYVKNLVCA-DG-FLYCSFFSL-EAIVA- 217 (365)
Q Consensus 145 ~~~~ls~~p~s~~~~v~v~~~~-~~~~--~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~-~G-~lY~~~l~~-~g~i~- 217 (365)
..++ .+|. +...+--.... .... ..+..+++. ++.+.+... +.....+++. +| .||+ .+. .+.|.
T Consensus 89 ND~~--vd~~-G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~--~~~pNGi~~s~dg~~lyv--~ds~~~~i~~ 160 (246)
T PF08450_consen 89 NDVA--VDPD-GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG--LGFPNGIAFSPDGKTLYV--ADSFNGRIWR 160 (246)
T ss_dssp EEEE--E-TT-S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE--ESSEEEEEEETTSSEEEE--EETTTTEEEE
T ss_pred ceEE--EcCC-CCEEEEecCCCccccccccceEEECCC-CeEEEEecC--cccccceEECCcchheee--cccccceeEE
Confidence 2233 3443 33333222111 0111 456666666 555554432 2234455555 45 5776 554 57788
Q ss_pred EEecCCce--e---ee-ecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEeccCC-Ce---EEEecc
Q 040662 218 YNVASQNL--E---IL-PYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIESLD-DR---VLFTGA 287 (365)
Q Consensus 218 ~d~~~~~~--~---~i-~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~lg-~~---~lfvg~ 287 (365)
||++.+.. . .+ ..+...+.-.-..+..+|.|++.... .-+|++++.++..-.++. ++ .+ +-|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~~~~p~G~~~~~i~-~p~~~~t~~~fg-- 233 (246)
T PF08450_consen 161 FDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIVVFDPDGKLLREIE-LPVPRPTNCAFG-- 233 (246)
T ss_dssp EEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEEEEETTSCEEEEEE--SSSSEEEEEEE--
T ss_pred EeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEEEECCCccEEEEEc-CCCCCEEEEEEE--
Confidence 99875432 1 22 22211111223345568998775542 237888887744444443 44 22 2221
Q ss_pred CCCCCCCCCCeEEEee
Q 040662 288 SCLWVPVEKGSAFANT 303 (365)
Q Consensus 288 ~~~~~~~~~n~IYf~~ 303 (365)
|-..+.+|++.
T Consensus 234 -----g~~~~~L~vTt 244 (246)
T PF08450_consen 234 -----GPDGKTLYVTT 244 (246)
T ss_dssp -----STTSSEEEEEE
T ss_pred -----CCCCCEEEEEe
Confidence 23567777764
No 87
>PLN02772 guanylate kinase
Probab=28.72 E-value=3e+02 Score=26.39 Aligned_cols=70 Identities=11% Similarity=0.050 Sum_probs=43.0
Q ss_pred eeeEEEECCEEEEEecCC---Cc----EEE-EEecCCceeeeec----CCCceeceeEEEEeCCcEEEEEEEcCCCceEE
Q 040662 195 VKNLVCADGFLYCSFFSL---EA----IVA-YNVASQNLEILPY----PPSILFMYKYLTEYDGSLLIFGKVVDGSGYRV 262 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~---~g----~i~-~d~~~~~~~~i~~----p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V 262 (365)
....+..++++|+ ..- .+ .+. ||..+.+|..... |+++. .....+--+++|+++.... ...-.+
T Consensus 27 ~~tav~igdk~yv--~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~-GhSa~v~~~~rilv~~~~~-~~~~~~ 102 (398)
T PLN02772 27 RETSVTIGDKTYV--IGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCK-GYSAVVLNKDRILVIKKGS-APDDSI 102 (398)
T ss_pred cceeEEECCEEEE--EcccCCCccccceEEEEECCCCcEecccccCCCCCCCC-cceEEEECCceEEEEeCCC-CCccce
Confidence 4567788999998 652 22 455 9999999975332 33332 2233333478888887654 334567
Q ss_pred EEeeCC
Q 040662 263 FTFNRS 268 (365)
Q Consensus 263 ~~ld~~ 268 (365)
|-|+..
T Consensus 103 w~l~~~ 108 (398)
T PLN02772 103 WFLEVD 108 (398)
T ss_pred EEEEcC
Confidence 777643
No 88
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=28.31 E-value=5.4e+02 Score=24.69 Aligned_cols=89 Identities=11% Similarity=0.020 Sum_probs=51.2
Q ss_pred CCceEEeeeeCCccceeeEEE-ECCEEEEEecCCCcEEE-EEecCCce-----eeeecCCCceeceeEEEE-eCCcEEEE
Q 040662 180 DTTWTELRFQDNYRYVKNLVC-ADGFLYCSFFSLEAIVA-YNVASQNL-----EILPYPPSILFMYKYLTE-YDGSLLIF 251 (365)
Q Consensus 180 ~~~W~~~~~~~~~~~~~~~v~-~~G~lY~~~l~~~g~i~-~d~~~~~~-----~~i~~p~~~~~~~~~Lve-~~G~L~lV 251 (365)
...|..+..+... ....+.+ .+|.++. ++..|.+. -+-...+| ..++.+... ..-..++. .++.++++
T Consensus 269 ~~~W~~~~~~~~~-~l~~v~~~~dg~l~l--~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~-~~l~~v~~~~d~~~~a~ 344 (398)
T PLN00033 269 QPYWQPHNRASAR-RIQNMGWRADGGLWL--LTRGGGLYVSKGTGLTEEDFDFEEADIKSRG-FGILDVGYRSKKEAWAA 344 (398)
T ss_pred CcceEEecCCCcc-ceeeeeEcCCCCEEE--EeCCceEEEecCCCCcccccceeecccCCCC-cceEEEEEcCCCcEEEE
Confidence 3459998876422 2444444 4788888 88888777 43334444 333332111 11122333 36788877
Q ss_pred EEEcCCCceEEEEeeCCCCCeEEecc
Q 040662 252 GKVVDGSGYRVFTFNRSQMDWFEIES 277 (365)
Q Consensus 252 ~~~~~~~~~~V~~ld~~~~~W~~v~~ 277 (365)
.... .|++.....+.|.++.+
T Consensus 345 G~~G-----~v~~s~D~G~tW~~~~~ 365 (398)
T PLN00033 345 GGSG-----ILLRSTDGGKSWKRDKG 365 (398)
T ss_pred ECCC-----cEEEeCCCCcceeEccc
Confidence 7553 56666667789999764
No 89
>PRK13684 Ycf48-like protein; Provisional
Probab=27.80 E-value=4.7e+02 Score=24.26 Aligned_cols=56 Identities=13% Similarity=0.122 Sum_probs=31.6
Q ss_pred EEecCC--CceEEeeeeCCcc-ceeeEEEE-CCEEEEEecCCCcEEE-EEecCCceeeeecCC
Q 040662 175 ICRPGD--TTWTELRFQDNYR-YVKNLVCA-DGFLYCSFFSLEAIVA-YNVASQNLEILPYPP 232 (365)
Q Consensus 175 ~~~~g~--~~W~~~~~~~~~~-~~~~~v~~-~G~lY~~~l~~~g~i~-~d~~~~~~~~i~~p~ 232 (365)
+|++.| .+|+.+..+...+ ....+... ++.+|+ ....|.|+ -+-..++|+.+..+.
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~--~g~~G~i~~S~DgG~tW~~~~~~~ 171 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEM--ATNVGAIYRTTDGGKNWEALVEDA 171 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCCCceEEEEECCCccee--eeccceEEEECCCCCCceeCcCCC
Confidence 666665 5999986432111 11223333 455666 77777776 333456898776544
No 90
>smart00284 OLF Olfactomedin-like domains.
Probab=27.41 E-value=4.5e+02 Score=23.49 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=44.9
Q ss_pred eeeEEEECCEEEEEecCCCcEEE-EEecCCceeeee-cCC-------Cc---eeceeEEEEeCCcEEEEEEEcC-CCceE
Q 040662 195 VKNLVCADGFLYCSFFSLEAIVA-YNVASQNLEILP-YPP-------SI---LFMYKYLTEYDGSLLIFGKVVD-GSGYR 261 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~~~~i~-~p~-------~~---~~~~~~Lve~~G~L~lV~~~~~-~~~~~ 261 (365)
....|+.||.||.| -.....|+ ||+.+++..... .|- +. +....-|..-+..|.+|-.... ...+.
T Consensus 76 GtG~VVYngslYY~-~~~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~iv 154 (255)
T smart00284 76 GTGVVVYNGSLYFN-KFNSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIV 154 (255)
T ss_pred cccEEEECceEEEE-ecCCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEE
Confidence 45668889999984 22235688 999987653222 121 11 1233445555667777766543 35688
Q ss_pred EEEeeCCC
Q 040662 262 VFTFNRSQ 269 (365)
Q Consensus 262 V~~ld~~~ 269 (365)
|-+||..+
T Consensus 155 vSkLnp~t 162 (255)
T smart00284 155 ISKLNPAT 162 (255)
T ss_pred EEeeCccc
Confidence 89998764
No 91
>PF05528 Coronavirus_5: Coronavirus gene 5 protein; InterPro: IPR008458 Infectious bronchitis virus, a member of Coronaviridae family, has a single-stranded positive-sense RNA genome, which is 27 kb in length. Gene 5 contains two (5a and 5b) open reading frames. The function of the 5a and 5b proteins is unknown [].
Probab=26.75 E-value=38 Score=23.33 Aligned_cols=12 Identities=0% Similarity=-0.247 Sum_probs=7.5
Q ss_pred Cceeeeeccccc
Q 040662 315 DVCREFIRKPVE 326 (365)
Q Consensus 315 ~~~~~~~~~~~~ 326 (365)
..|+.+++++|.
T Consensus 33 ~aGqaE~Cp~Ct 44 (82)
T PF05528_consen 33 KAGQAEPCPACT 44 (82)
T ss_pred ccCccccCcchh
Confidence 456666666663
No 92
>PHA00407 phage lambda Rz1-like protein
Probab=26.21 E-value=35 Score=23.86 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=22.9
Q ss_pred HHHHHhcCChhhhhhhhhcchhhHHhhcc
Q 040662 25 INSIVSRLYVVYQIRFRAVCKRWRAADIQ 53 (365)
Q Consensus 25 l~~Il~rLp~~~l~r~r~VCk~Wrs~~~~ 53 (365)
+..|+.....+....++..|++|++++..
T Consensus 9 ~~r~lr~~s~~y~~stkktl~rwkaaLIG 37 (84)
T PHA00407 9 LRRILRLRSMKYRLSTKKTLRRWKAALIG 37 (84)
T ss_pred HHHHHHHHhhcCcchhhhhhHHHHHHHHH
Confidence 44566666678999999999999988653
No 93
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=26.17 E-value=58 Score=29.15 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=25.3
Q ss_pred CCCCCCChHHHHHHHHhcCCh-hhhhhhhhcc
Q 040662 14 RGSWSDLPLEIINSIVSRLYV-VYQIRFRAVC 44 (365)
Q Consensus 14 ~~~w~~LP~Dll~~Il~rLp~-~~l~r~r~VC 44 (365)
.....+||.+++.+|+.|||- .|++...-|=
T Consensus 199 ~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~ 230 (332)
T KOG3926|consen 199 GLTLHDLPLECVLNILLRLSDHRDLESLAQAW 230 (332)
T ss_pred CCCcccchHHHHHHHHHHccCcchHHHHHHhh
Confidence 345789999999999999995 7888777663
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=26.10 E-value=6.1e+02 Score=24.58 Aligned_cols=165 Identities=12% Similarity=0.028 Sum_probs=83.1
Q ss_pred ccEEEEcCCCCCeeeCCCCcccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecCCCceEEeeeeCCccceeeEEE
Q 040662 121 SPLFFYSPFADQIINLPAWREFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPGDTTWTELRFQDNYRYVKNLVC 200 (365)
Q Consensus 121 ~~~~l~NP~T~~~~~LP~~~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~ 200 (365)
..++++|..|++...+...... ... ....|. ++.++++.... ....+.+++..++..+.+.... .......+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~-~~~--~~wSPD-G~~La~~~~~~--g~~~Iy~~dl~tg~~~~lt~~~--~~~~~p~w 313 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGI-NGA--PRFSPD-GKKLALVLSKD--GQPEIYVVDIATKALTRITRHR--AIDTEPSW 313 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCC-cCC--eeECCC-CCEEEEEEeCC--CCeEEEEEECCCCCeEECccCC--CCccceEE
Confidence 5799999999987666544221 112 223443 34555443322 2356777787777766654321 11122333
Q ss_pred E-CCE-EEEEecCC-Cc--EEE-EEecCCceeeeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCeEE
Q 040662 201 A-DGF-LYCSFFSL-EA--IVA-YNVASQNLEILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFE 274 (365)
Q Consensus 201 ~-~G~-lY~~~l~~-~g--~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~ 274 (365)
. ||+ +++ .+. .| .|. +|+++.+.+.+...... .... -..-+|+.+++.... ...++||.+|..+.....
T Consensus 314 SpDG~~I~f--~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~-~~~~-~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 314 HPDGKSLIF--TSERGGKPQIYRVNLASGKVSRLTFEGEQ-NLGG-SITPDGRSMIMVNRT-NGKFNIARQDLETGAMQV 388 (448)
T ss_pred CCCCCEEEE--EECCCCCceEEEEECCCCCEEEEecCCCC-CcCe-eECCCCCEEEEEEec-CCceEEEEEECCCCCeEE
Confidence 2 554 333 332 22 566 78876665544321111 0111 112267665554333 356789999987776665
Q ss_pred eccCCCeEEEeccCCCCCCCCCCeEEEeee
Q 040662 275 IESLDDRVLFTGASCLWVPVEKGSAFANTV 304 (365)
Q Consensus 275 v~~lg~~~lfvg~~~~~~~~~~n~IYf~~~ 304 (365)
+..-+. ... ..+.-.|..|+|...
T Consensus 389 lt~~~~-----d~~-ps~spdG~~I~~~~~ 412 (448)
T PRK04792 389 LTSTRL-----DES-PSVAPNGTMVIYSTT 412 (448)
T ss_pred ccCCCC-----CCC-ceECCCCCEEEEEEe
Confidence 543210 000 112236777888764
No 95
>PLN02969 9-cis-epoxycarotenoid dioxygenase
Probab=25.81 E-value=2.8e+02 Score=28.32 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=20.6
Q ss_pred eeEEEECCEEEEEecCCCcEEE-EEecC
Q 040662 196 KNLVCADGFLYCSFFSLEAIVA-YNVAS 222 (365)
Q Consensus 196 ~~~v~~~G~lY~~~l~~~g~i~-~d~~~ 222 (365)
.++++++|+||+ +...|... +|+.+
T Consensus 182 T~V~~~gg~LlA--l~E~g~P~~lDP~T 207 (610)
T PLN02969 182 TSVLKWGGRLLC--LWEGGEPYEIDSGT 207 (610)
T ss_pred cceeeeCCEEEE--ecCCCCCeEcCcCc
Confidence 477899999999 99888777 88754
No 96
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=25.43 E-value=5.1e+02 Score=23.48 Aligned_cols=106 Identities=14% Similarity=0.180 Sum_probs=58.8
Q ss_pred eEEEEEEecCCCceEEeeeeCCccceeeEEEE-CCEEEE----EecC-CCcEEE-EEecCCceeeeecCC----Cceece
Q 040662 170 ISCISICRPGDTTWTELRFQDNYRYVKNLVCA-DGFLYC----SFFS-LEAIVA-YNVASQNLEILPYPP----SILFMY 238 (365)
Q Consensus 170 ~~~~~~~~~g~~~W~~~~~~~~~~~~~~~v~~-~G~lY~----~~l~-~~g~i~-~d~~~~~~~~i~~p~----~~~~~~ 238 (365)
...+.+|+....+|....... .....++.+. +..+|+ -.-+ ....++ ||..+.+|+.+.... +. ...
T Consensus 15 C~~lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg-pv~ 92 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWSSPGNGI-SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG-PVT 92 (281)
T ss_pred CCEEEEEECCCCEeecCCCCc-eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC-cEE
Confidence 457889999999999987541 1123344433 344444 0033 234677 999999997665421 11 111
Q ss_pred eEEE-EeC-CcEEEEEEEcCCCceEEEEeeCCCCCeEEecc--CCC
Q 040662 239 KYLT-EYD-GSLLIFGKVVDGSGYRVFTFNRSQMDWFEIES--LDD 280 (365)
Q Consensus 239 ~~Lv-e~~-G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~~--lg~ 280 (365)
...+ ..+ ..+.+.... .....-|.+. ++.+|..+.. +++
T Consensus 93 a~~~~~~d~~~~~~aG~~-~~g~~~l~~~--dGs~W~~i~~~~~~~ 135 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRS-ANGSTFLMKY--DGSSWSSIGSDILGS 135 (281)
T ss_pred EEEeeccCCceEEEecee-cCCCceEEEE--cCCceEeccccccCC
Confidence 1111 123 355555554 2334456666 4679999887 454
No 97
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=24.84 E-value=2.6e+02 Score=27.95 Aligned_cols=30 Identities=13% Similarity=0.180 Sum_probs=22.9
Q ss_pred eeEEEECCEEEEEecCCCcEEE-EEecCC--ceee
Q 040662 196 KNLVCADGFLYCSFFSLEAIVA-YNVASQ--NLEI 227 (365)
Q Consensus 196 ~~~v~~~G~lY~~~l~~~g~i~-~d~~~~--~~~~ 227 (365)
...++.+|++|+ .+..+.|. +|..+. .|+.
T Consensus 63 stPvv~~g~vyv--~s~~g~v~AlDa~TGk~lW~~ 95 (527)
T TIGR03075 63 SQPLVVDGVMYV--TTSYSRVYALDAKTGKELWKY 95 (527)
T ss_pred cCCEEECCEEEE--ECCCCcEEEEECCCCceeeEe
Confidence 345778999998 88888888 998764 4764
No 98
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.72 E-value=5.8e+02 Score=23.50 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=37.2
Q ss_pred cCCCcEEE-EEecCCceeeeecC----CCcee-ceeEEE--EeCCcEEEEEEEcCCCceEEEEeeCCCCCeEEec
Q 040662 210 FSLEAIVA-YNVASQNLEILPYP----PSILF-MYKYLT--EYDGSLLIFGKVVDGSGYRVFTFNRSQMDWFEIE 276 (365)
Q Consensus 210 l~~~g~i~-~d~~~~~~~~i~~p----~~~~~-~~~~Lv--e~~G~L~lV~~~~~~~~~~V~~ld~~~~~W~~v~ 276 (365)
..+...|+ +|.++++.+++-.. +..+. .-.-++ ..+++|++..... +..+-||++|..+++=+++.
T Consensus 74 ~NKYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~DG-h~nLGvy~ldr~~g~~~~L~ 147 (339)
T PF09910_consen 74 RNKYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARADG-HANLGVYSLDRRTGKAEKLS 147 (339)
T ss_pred eeccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEecCC-cceeeeEEEcccCCceeecc
Confidence 34456788 88887765544321 11111 111111 2467777755443 67899999998766555544
No 99
>PF13919 ASXH: Asx homology domain
Probab=21.20 E-value=63 Score=25.85 Aligned_cols=43 Identities=23% Similarity=0.375 Sum_probs=33.3
Q ss_pred cCCCCCCChHHHHHHHHhcCChhhhh--------------------hhhhcchhhHHhhccCC
Q 040662 13 ERGSWSDLPLEIINSIVSRLYVVYQI--------------------RFRAVCKRWRAADIQSR 55 (365)
Q Consensus 13 ~~~~w~~LP~Dll~~Il~rLp~~~l~--------------------r~r~VCk~Wrs~~~~~~ 55 (365)
+...|..||.+=-.+||..||..|.. .||..|..|+..+..-+
T Consensus 40 N~~tw~~L~~eeq~eLl~LLP~~D~~~~~~~~~~~~~l~~S~lnn~~F~~a~~~fqe~L~~G~ 102 (138)
T PF13919_consen 40 NPETWSCLPEEEQQELLKLLPEVDRQVGPDPPDDSLPLSESALNNEFFRDACQEFQERLAEGE 102 (138)
T ss_pred CHHHHhcCCHHHHHHHHHhCCCCCcccccCCCcccccCCHHHhcCHHHHHHHHHHHHHHHcCC
Confidence 45679999999999999999975442 37778888887776643
No 100
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=20.84 E-value=7.5e+02 Score=23.72 Aligned_cols=91 Identities=11% Similarity=0.170 Sum_probs=54.8
Q ss_pred cCCCceEEeeeeC----Cc-cceeeEEEECCEEEEEecCCCcEEE-EEecCCceeeeecCCCceeceeEEEEeC-CcEEE
Q 040662 178 PGDTTWTELRFQD----NY-RYVKNLVCADGFLYCSFFSLEAIVA-YNVASQNLEILPYPPSILFMYKYLTEYD-GSLLI 250 (365)
Q Consensus 178 ~g~~~W~~~~~~~----~~-~~~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~~~~~i~~p~~~~~~~~~Lve~~-G~L~l 250 (365)
-|..+|+....+. +. ....++.+.++..|+ +...|.|+ =+=..++|+.++.++........+...+ +...+
T Consensus 117 DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~--vG~~G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~i 194 (398)
T PLN00033 117 DGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWI--IGKPAILLHTSDGGETWERIPLSPKLPGEPVLIKATGPKSAEM 194 (398)
T ss_pred CCCCCceECccCcccccccccceeeeEEECCEEEE--EcCceEEEEEcCCCCCceECccccCCCCCceEEEEECCCceEE
Confidence 3556899865331 11 125667777888888 88888776 3333468987765432111123344444 45666
Q ss_pred EEEEcCCCceEEEEeeCCCCCeEEe
Q 040662 251 FGKVVDGSGYRVFTFNRSQMDWFEI 275 (365)
Q Consensus 251 V~~~~~~~~~~V~~ld~~~~~W~~v 275 (365)
|.... .||+-+.....|.++
T Consensus 195 vg~~G-----~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 195 VTDEG-----AIYVTSNAGRNWKAA 214 (398)
T ss_pred Eeccc-----eEEEECCCCCCceEc
Confidence 65332 588887777889887
No 101
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=20.23 E-value=7.9e+02 Score=23.74 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=89.9
Q ss_pred ccEEEEcCCCCCeeeCCCC-cccceeEEEEecCCCCCCeEEEEEeCCCcCeEEEEEEecC---CCceEEeeeeCCcccee
Q 040662 121 SPLFFYSPFADQIINLPAW-REFSIAKATFSATPISPDCVVFVTWVGIMEISCISICRPG---DTTWTELRFQDNYRYVK 196 (365)
Q Consensus 121 ~~~~l~NP~T~~~~~LP~~-~~~~~~~~~ls~~p~s~~~~v~v~~~~~~~~~~~~~~~~g---~~~W~~~~~~~~~~~~~ 196 (365)
..+.++|..||+.+++=+- ..++...++. -|.... + |..+. ...+..|+.. -+.|+-+..| ...
T Consensus 291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W--~pDg~~--~-V~Gs~---dr~i~~wdlDgn~~~~W~gvr~~----~v~ 358 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAW--CPDGFR--F-VTGSP---DRTIIMWDLDGNILGNWEGVRDP----KVH 358 (519)
T ss_pred HheeeccCCcchhhhhcccCcCCCcceeEE--ccCCce--e-EecCC---CCcEEEecCCcchhhcccccccc----eeE
Confidence 3578999999987665332 1222222222 232212 2 22222 2344455543 3578877654 233
Q ss_pred eEE-EECC-EEEEEecCCCcEEE-EEecCCcee-eeecCCCceeceeEEEEeCCcEEEEEEEcCCCceEEEEeeCCCCCe
Q 040662 197 NLV-CADG-FLYCSFFSLEAIVA-YNVASQNLE-ILPYPPSILFMYKYLTEYDGSLLIFGKVVDGSGYRVFTFNRSQMDW 272 (365)
Q Consensus 197 ~~v-~~~G-~lY~~~l~~~g~i~-~d~~~~~~~-~i~~p~~~~~~~~~Lve~~G~L~lV~~~~~~~~~~V~~ld~~~~~W 272 (365)
+++ -.|| .+|. ++.+-.|. |+.....-. ++...-+ ...+=..-+|++.+|.... ..+.+|.++ +|
T Consensus 359 dlait~Dgk~vl~--v~~d~~i~l~~~e~~~dr~lise~~~---its~~iS~d~k~~LvnL~~--qei~LWDl~----e~ 427 (519)
T KOG0293|consen 359 DLAITYDGKYVLL--VTVDKKIRLYNREARVDRGLISEEQP---ITSFSISKDGKLALVNLQD--QEIHLWDLE----EN 427 (519)
T ss_pred EEEEcCCCcEEEE--EecccceeeechhhhhhhccccccCc---eeEEEEcCCCcEEEEEccc--CeeEEeecc----hh
Confidence 433 2345 4666 66666666 776553322 3332222 1111122379999988764 678888875 45
Q ss_pred EEeccCCC--eEEEeccCC-----CCC---CCCCCeEEEeeeCCCce--EEEEcCceeee
Q 040662 273 FEIESLDD--RVLFTGASC-----LWV---PVEKGSAFANTVHWFGR--YSYIRDVCREF 320 (365)
Q Consensus 273 ~~v~~lg~--~~lfvg~~~-----~~~---~~~~n~IYf~~~~~~~~--~vy~l~~~~~~ 320 (365)
+.+...-| +.-|+=+.| .++ |-+...||+.+.. .++ .+.+--.+..+
T Consensus 428 ~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~-sgkll~~LsGHs~~vN 486 (519)
T KOG0293|consen 428 KLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRI-SGKLLAVLSGHSKTVN 486 (519)
T ss_pred hHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEcc-CCceeEeecCCcceee
Confidence 55554322 334555555 223 4588899998752 333 34444444433
No 102
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=20.22 E-value=6.6e+02 Score=22.79 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=49.1
Q ss_pred EEEEEEecC-CCceEEeeeeCCccceeeEEEE-CCE-EEEEecCC-CcEEE-EEecC-CceeeeecCCCceeceeEEEEe
Q 040662 171 SCISICRPG-DTTWTELRFQDNYRYVKNLVCA-DGF-LYCSFFSL-EAIVA-YNVAS-QNLEILPYPPSILFMYKYLTEY 244 (365)
Q Consensus 171 ~~~~~~~~g-~~~W~~~~~~~~~~~~~~~v~~-~G~-lY~~~l~~-~g~i~-~d~~~-~~~~~i~~p~~~~~~~~~Lve~ 244 (365)
..+.+|+.. ++.++.+..-........+++. +|+ ||+ .+. .+.|. |+++. .+++.+...+.. ....+++..
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv--~~~~~~~i~~~~~~~~g~l~~~~~~~~~-~~p~~i~~~ 88 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYV--GVRPEFRVLSYRIADDGALTFAAESPLP-GSPTHISTD 88 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEE--EECCCCcEEEEEECCCCceEEeeeecCC-CCceEEEEC
Confidence 355666654 3566665532111122233333 454 676 544 45666 88863 345444321111 123456554
Q ss_pred -CCcEEEEEEEcCCCceEEEEeeCC
Q 040662 245 -DGSLLIFGKVVDGSGYRVFTFNRS 268 (365)
Q Consensus 245 -~G~L~lV~~~~~~~~~~V~~ld~~ 268 (365)
+|+.+++.... ...+.||.++..
T Consensus 89 ~~g~~l~v~~~~-~~~v~v~~~~~~ 112 (330)
T PRK11028 89 HQGRFLFSASYN-ANCVSVSPLDKD 112 (330)
T ss_pred CCCCEEEEEEcC-CCeEEEEEECCC
Confidence 68877766544 467889988754
No 103
>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED
Probab=20.09 E-value=6.4e+02 Score=25.69 Aligned_cols=73 Identities=16% Similarity=0.239 Sum_probs=40.6
Q ss_pred eeeEEEECCEEEEEecCCCcEEE-EEecCC-ceeee---ecC--CCc-eeceeEEEEeCCcEEEEEEEc-CCCceEEEEe
Q 040662 195 VKNLVCADGFLYCSFFSLEAIVA-YNVASQ-NLEIL---PYP--PSI-LFMYKYLTEYDGSLLIFGKVV-DGSGYRVFTF 265 (365)
Q Consensus 195 ~~~~v~~~G~lY~~~l~~~g~i~-~d~~~~-~~~~i---~~p--~~~-~~~~~~Lve~~G~L~lV~~~~-~~~~~~V~~l 265 (365)
-.++++++|+||+ +...|.=. +|++.. +.+.+ ... ... ...+..+-...|+|+...... ....+.+|++
T Consensus 240 NT~vv~~~grLlA--L~E~g~Py~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~ 317 (590)
T PLN02258 240 NAGLVYFNGRLLA--MSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRF 317 (590)
T ss_pred ceeEEEECCEEEE--EEcCCCceEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEE
Confidence 3588999999999 88877544 544321 22211 110 011 112222223368988877652 2356888888
Q ss_pred eCCC
Q 040662 266 NRSQ 269 (365)
Q Consensus 266 d~~~ 269 (365)
|.++
T Consensus 318 d~~G 321 (590)
T PLN02258 318 SPDG 321 (590)
T ss_pred CCCC
Confidence 8754
Done!