BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>040664
MTLEKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMS
RKKRGLYEAMKKGQERKKAHVDLLKQRKKKIEAAEKFKKN

High Scoring Gene Products

Symbol, full name Information P value
AT5G14520 protein from Arabidopsis thaliana 2.4e-13

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  040664
        (100 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2222607 - symbol:AT5G14520 "AT5G14520" species...   184  2.4e-13   1


>TAIR|locus:2222607 [details] [associations]
            symbol:AT5G14520 "AT5G14520" species:3702 "Arabidopsis
            thaliana" [GO:0003713 "transcription coactivator activity"
            evidence=ISS] [GO:0005622 "intracellular" evidence=ISS] [GO:0005634
            "nucleus" evidence=ISM] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0006606 "protein import into nucleus"
            evidence=RCA] [GO:0051604 "protein maturation" evidence=RCA]
            InterPro:IPR010613 Pfam:PF06732 InterPro:IPR001357 Pfam:PF00533
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005730 SMART:SM00292
            SUPFAM:SSF52113 PROSITE:PS50172 GO:GO:0006364 EMBL:AL163792
            eggNOG:COG5163 HOGENOM:HOG000006022 KO:K14843 OMA:EEQRMEG
            HSSP:P18887 IPI:IPI00522738 PIR:T48625 RefSeq:NP_196956.1
            UniGene:At.50457 ProteinModelPortal:Q9LYK7 SMR:Q9LYK7 STRING:Q9LYK7
            PaxDb:Q9LYK7 PRIDE:Q9LYK7 EnsemblPlants:AT5G14520.1 GeneID:831303
            KEGG:ath:AT5G14520 TAIR:At5g14520 InParanoid:Q9LYK7
            PhylomeDB:Q9LYK7 ProtClustDB:CLSN2687226 Genevestigator:Q9LYK7
            Uniprot:Q9LYK7
        Length = 590

 Score = 184 (69.8 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 44/86 (51%), Positives = 59/86 (68%)

Query:     4 EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTED--MSKLLMSR 61
             EKQYH+ELKME++G K    V+    +  GE    GEE +PD  QI+ ED  M K+LMSR
Sbjct:   502 EKQYHEELKMEINGSK--DVVAPVLAE--GE----GEESVPDAMQIAQEDADMPKVLMSR 553

Query:    62 KKRGLYEAMKKGQERKKAHVDLLKQR 87
             KKR LY+AMK  Q RK++ V++++QR
Sbjct:   554 KKRKLYDAMKISQSRKRSGVEIIEQR 579


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.306   0.124   0.325    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      100        88   0.00091  102 3  10 23  0.41    30
                                                     29  0.49    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  520 (55 KB)
  Total size of DFA:  119 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.01u 0.16s 18.17t   Elapsed:  00:00:01
  Total cpu time:  18.01u 0.16s 18.17t   Elapsed:  00:00:01
  Start:  Sat May 11 06:37:15 2013   End:  Sat May 11 06:37:16 2013

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