Query 040664
Match_columns 100
No_of_seqs 103 out of 125
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 10:36:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5163 NOP7 Protein required 99.8 8.4E-19 1.8E-23 145.1 6.5 88 4-96 499-586 (591)
2 KOG2481 Protein required for n 99.0 4.9E-10 1.1E-14 94.8 4.7 90 5-94 478-569 (570)
3 PF08946 Osmo_CC: Osmosensory 30.0 1.3E+02 0.0028 18.1 3.8 28 67-94 14-41 (46)
4 PRK10343 RNA-binding protein Y 11.8 89 0.0019 21.2 0.3 17 57-73 1-17 (97)
5 PF15269 zf-C2H2_7: Zinc-finge 10.3 1.5E+02 0.0033 18.1 1.0 15 63-77 33-47 (54)
6 KOG4036 Uncharacterized conser 9.8 2.5E+02 0.0055 22.1 2.2 21 63-83 41-61 (236)
7 PF13133 DUF3949: Protein of u 9.5 1.9E+02 0.0041 18.4 1.2 14 62-75 22-35 (62)
8 PF12078 DUF3557: Domain of un 6.2 2.4E+02 0.0052 19.0 0.6 10 65-74 1-10 (154)
9 PF13339 AATF-Che1: Apoptosis 5.4 5.5E+02 0.012 17.3 2.1 20 53-72 1-20 (131)
10 PF08172 CASP_C: CASP C termin 5.3 3.6E+02 0.0078 21.0 1.2 11 64-74 124-134 (248)
No 1
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=8.4e-19 Score=145.14 Aligned_cols=88 Identities=27% Similarity=0.416 Sum_probs=69.9
Q ss_pred hhhhhHHHHhhhcCCCccccchhhhhhccccccccCCCCCCchhhhchHHHHHHHHhHhHHHHHHHHHhhHHhHHHHHHH
Q 040664 4 EKQYHDELKMELDGFKYSSSVSDATKQKSGEDMETGEEPLPDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVDL 83 (100)
Q Consensus 4 ~~q~q~ELeaE~~G~~~s~~~~~~~k~~~k~~~~~~~~~k~~~ee~ee~em~K~MMS~KkRKLYekMqys~~KK~~e~~~ 83 (100)
++|||.|||+|++||.||+..... +..++.+.+ .....+++|++++.+||||||||+||.+|+|+|.+++...+.
T Consensus 499 elq~qkele~ea~gi~yse~~e~~-k~~~ksk~k----kr~~~ee~e~k~l~~immsnkqkkly~kmk~~nak~e~~~~~ 573 (591)
T COG5163 499 ELQAQKELELEAQGIKYSETSEAD-KDVNKSKNK----KRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAEN 573 (591)
T ss_pred HHHHHHHHHhhhcCccchhhcccc-hhhhhhhhh----hhchhhHHHHHHHHHHHhhhhHHHHHHHhhccccccHHHHHH
Confidence 689999999999999999755432 212122221 112224457889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q 040664 84 LKQRKKKIEAAEK 96 (100)
Q Consensus 84 L~~Kkkklek~k~ 96 (100)
|+.++++|.++++
T Consensus 574 lk~kkk~i~k~kk 586 (591)
T COG5163 574 LKKKKKQIAKQKK 586 (591)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999999874
No 2
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=98.98 E-value=4.9e-10 Score=94.77 Aligned_cols=90 Identities=28% Similarity=0.379 Sum_probs=64.1
Q ss_pred hhhhHHHHhhhcCCCccccchhhh-hhccccccccCCCCC-CchhhhchHHHHHHHHhHhHHHHHHHHHhhHHhHHHHHH
Q 040664 5 KQYHDELKMELDGFKYSSSVSDAT-KQKSGEDMETGEEPL-PDVQQISTEDMSKLLMSRKKRGLYEAMKKGQERKKAHVD 82 (100)
Q Consensus 5 ~q~q~ELeaE~~G~~~s~~~~~~~-k~~~k~~~~~~~~~k-~~~ee~ee~em~K~MMS~KkRKLYekMqys~~KK~~e~~ 82 (100)
+.+|.||+.|+.|+.|+.-..... +..++...+-..... ...++.++.+|++||||+++|+||.+|.+++.++..++.
T Consensus 478 ~e~~~e~e~e~~~~~~~~~~~e~~~~~~~~sk~k~~~~~~~~~~ee~e~~~l~~~mms~k~~~ly~k~~~~~~rk~~e~~ 557 (570)
T KOG2481|consen 478 LESQKELEEEARLAAYEEQVTEGKKKRVNKSKEKLRPLLRLKEVEEQEEKRLAKMMMSKKERKLYQKMKFSKSRKEQEAL 557 (570)
T ss_pred chhhhhhhhhccccccchhhhhhhcccccccccccchhhhhHHHHHHHHhhhHHHhcchHHHHHHHHHhhhhhhhhhHHH
Confidence 567899999999999986443321 111011110000000 111344788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 040664 83 LLKQRKKKIEAA 94 (100)
Q Consensus 83 ~L~~Kkkklek~ 94 (100)
.|++||+.|+..
T Consensus 558 ~l~~kkk~~~~~ 569 (570)
T KOG2481|consen 558 KLKKKKKRIEAT 569 (570)
T ss_pred HHHHHHHhhhcc
Confidence 999999999864
No 3
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=30.02 E-value=1.3e+02 Score=18.10 Aligned_cols=28 Identities=11% Similarity=0.362 Sum_probs=21.9
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHH
Q 040664 67 YEAMKKGQERKKAHVDLLKQRKKKIEAA 94 (100)
Q Consensus 67 YekMqys~~KK~~e~~~L~~Kkkklek~ 94 (100)
|+.+.....-=++++..|..||..|..+
T Consensus 14 ~d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 14 YDNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp -THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777788999999999988643
No 4
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=11.76 E-value=89 Score=21.19 Aligned_cols=17 Identities=12% Similarity=0.241 Sum_probs=12.9
Q ss_pred HHHhHhHHHHHHHHHhh
Q 040664 57 LLMSRKKRGLYEAMKKG 73 (100)
Q Consensus 57 ~MMS~KkRKLYekMqys 73 (100)
|+||.|||+-+..+-++
T Consensus 1 m~Lt~kqr~~LR~~ah~ 17 (97)
T PRK10343 1 MNLSTKQKQHLKGLAHP 17 (97)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 46899999888876543
No 5
>PF15269 zf-C2H2_7: Zinc-finger
Probab=10.34 E-value=1.5e+02 Score=18.07 Aligned_cols=15 Identities=27% Similarity=0.346 Sum_probs=11.6
Q ss_pred HHHHHHHHHhhHHhH
Q 040664 63 KRGLYEAMKKGQERK 77 (100)
Q Consensus 63 kRKLYekMqys~~KK 77 (100)
+--||..|+|+.=+.
T Consensus 33 kshl~nhmky~lckn 47 (54)
T PF15269_consen 33 KSHLFNHMKYSLCKN 47 (54)
T ss_pred HHHHHHHHHHHhhhh
Confidence 457999999987553
No 6
>KOG4036 consensus Uncharacterized conserved protein [Function unknown]
Probab=9.77 E-value=2.5e+02 Score=22.13 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhHHhHHHHHHH
Q 040664 63 KRGLYEAMKKGQERKKAHVDL 83 (100)
Q Consensus 63 kRKLYekMqys~~KK~~e~~~ 83 (100)
-|-||+.++-...+|+.+.+.
T Consensus 41 ~RsLyErLKenKDkKq~EfeE 61 (236)
T KOG4036|consen 41 DRSLYERLKENKDKKQAEFEE 61 (236)
T ss_pred chhHHHHHHhcccHHhHHHHH
Confidence 378999999999999998773
No 7
>PF13133 DUF3949: Protein of unknown function (DUF3949)
Probab=9.51 E-value=1.9e+02 Score=18.44 Aligned_cols=14 Identities=29% Similarity=0.501 Sum_probs=11.1
Q ss_pred hHHHHHHHHHhhHH
Q 040664 62 KKRGLYEAMKKGQE 75 (100)
Q Consensus 62 KkRKLYekMqys~~ 75 (100)
-|+-||+.|-+...
T Consensus 22 sQ~e~Y~nMsfeEe 35 (62)
T PF13133_consen 22 SQEELYDNMSFEEE 35 (62)
T ss_pred cHHHHHHhcchhHH
Confidence 47889999988754
No 8
>PF12078 DUF3557: Domain of unknown function (DUF3557); InterPro: IPR021942 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 150 amino acids in length.
Probab=6.15 E-value=2.4e+02 Score=19.03 Aligned_cols=10 Identities=50% Similarity=0.195 Sum_probs=7.0
Q ss_pred HHHHHHHhhH
Q 040664 65 GLYEAMKKGQ 74 (100)
Q Consensus 65 KLYekMqys~ 74 (100)
|||++|.|=.
T Consensus 1 Kl~eA~k~L~ 10 (154)
T PF12078_consen 1 KLHEAMKYLI 10 (154)
T ss_pred CHHHHHHHHH
Confidence 5788887744
No 9
>PF13339 AATF-Che1: Apoptosis antagonizing transcription factor
Probab=5.40 E-value=5.5e+02 Score=17.31 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=14.5
Q ss_pred HHHHHHHhHhHHHHHHHHHh
Q 040664 53 DMSKLLMSRKKRGLYEAMKK 72 (100)
Q Consensus 53 em~K~MMS~KkRKLYekMqy 72 (100)
|+.|+.=-+.|+.||+.+-.
T Consensus 1 D~~KG~aV~~Q~~lwd~lL~ 20 (131)
T PF13339_consen 1 DAEKGKAVKNQLKLWDRLLE 20 (131)
T ss_pred CcHHHHHHHHHHHHHHHHHH
Confidence 34566777889999987643
No 10
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=5.33 E-value=3.6e+02 Score=21.02 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=8.9
Q ss_pred HHHHHHHHhhH
Q 040664 64 RGLYEAMKKGQ 74 (100)
Q Consensus 64 RKLYekMqys~ 74 (100)
=+|||++.|-+
T Consensus 124 ~kLYEKiRylq 134 (248)
T PF08172_consen 124 VKLYEKIRYLQ 134 (248)
T ss_pred HHHHHHHHHHh
Confidence 58999999854
Done!