Query 040664
Match_columns 100
No_of_seqs 103 out of 125
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 17:06:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rq8_A Conserved hypothetical 8.3 93 0.0032 20.3 0.4 14 58-71 1-14 (104)
2 1byy_A Protein (sodium channel 8.2 80 0.0027 18.0 0.0 17 57-73 15-31 (53)
3 2l5g_B Putative uncharacterize 7.8 3.5E+02 0.012 15.1 4.6 30 67-96 11-40 (42)
4 4djc_B Sodium channel protein 6.1 2.6E+02 0.0091 14.6 1.5 12 61-72 2-13 (35)
5 1jei_A Emerin; membrane protei 5.7 1.7E+02 0.0059 17.0 0.6 7 9-15 9-15 (53)
6 1cf7_A Protein (transcription 3.1 3.9E+02 0.013 16.1 0.8 18 53-70 35-52 (76)
7 1tdp_A Carnobacteriocin B2 imm 2.8 4E+02 0.014 17.7 0.6 13 59-71 1-13 (111)
8 1tqe_X Histone deacetylase 9; 2.5 5.8E+02 0.02 12.8 0.9 15 51-65 12-26 (26)
9 2k47_A Phosphoprotein, P prote 2.4 6.4E+02 0.022 15.7 1.2 21 53-73 48-70 (79)
10 1gjj_A LAP2; inner nuclear mem 2.3 6E+02 0.021 18.1 1.0 6 64-69 139-144 (168)
No 1
>1rq8_A Conserved hypothetical protein; structural genomics, SAV1595, YHBY, UPF0044, unknown function; NMR {Staphylococcus aureus} SCOP: d.68.4.1
Probab=8.32 E-value=93 Score=20.31 Aligned_cols=14 Identities=7% Similarity=0.392 Sum_probs=10.6
Q ss_pred HHhHhHHHHHHHHH
Q 040664 58 LMSRKKRGLYEAMK 71 (100)
Q Consensus 58 MMS~KkRKLYekMq 71 (100)
|||.|||+-+..+-
T Consensus 1 mLt~kqr~~LR~~a 14 (104)
T 1rq8_A 1 MLTGKQKRYLRSLA 14 (104)
T ss_dssp CCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh
Confidence 68888988777653
No 2
>1byy_A Protein (sodium channel alpha-subunit); membrane protein; NMR {Rattus norvegicus} SCOP: j.12.1.1
Probab=8.24 E-value=80 Score=17.98 Aligned_cols=17 Identities=35% Similarity=0.641 Sum_probs=13.9
Q ss_pred HHHhHhHHHHHHHHHhh
Q 040664 57 LLMSRKKRGLYEAMKKG 73 (100)
Q Consensus 57 ~MMS~KkRKLYekMqys 73 (100)
++|+.-|++-|..|+.-
T Consensus 15 ~fmT~~Qkk~y~amkkl 31 (53)
T 1byy_A 15 IFMTEEQKKYYNAMKKL 31 (53)
T ss_dssp SCCCHHHHHHHHHHHTS
T ss_pred cccCHHHHHHHHHHHHH
Confidence 47899999999998754
No 3
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=7.78 E-value=3.5e+02 Score=15.09 Aligned_cols=30 Identities=10% Similarity=0.292 Sum_probs=23.2
Q ss_pred HHHHHhhHHhHHHHHHHHHHHHHHHHHHHh
Q 040664 67 YEAMKKGQERKKAHVDLLKQRKKKIEAAEK 96 (100)
Q Consensus 67 YekMqys~~KK~~e~~~L~~Kkkklek~k~ 96 (100)
++++-.-+.+-+..+..|..|-+.|+....
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345556778888889999999998887654
No 4
>4djc_B Sodium channel protein type 5 subunit alpha; EF-hand, calcium-binding protein; 1.35A {Homo sapiens}
Probab=6.15 E-value=2.6e+02 Score=14.55 Aligned_cols=12 Identities=42% Similarity=0.689 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHh
Q 040664 61 RKKRGLYEAMKK 72 (100)
Q Consensus 61 ~KkRKLYekMqy 72 (100)
..|++.|..|..
T Consensus 2 ~~Qkk~y~amkK 13 (35)
T 4djc_B 2 NAQKKYYNAMKK 13 (35)
T ss_pred HhHHHHHHHHHH
Confidence 468888988854
No 5
>1jei_A Emerin; membrane protein; NMR {Synthetic} SCOP: a.140.1.1 PDB: 2odc_I 2odg_C
Probab=5.72 E-value=1.7e+02 Score=17.00 Aligned_cols=7 Identities=43% Similarity=0.396 Sum_probs=3.2
Q ss_pred HHHHhhh
Q 040664 9 DELKMEL 15 (100)
Q Consensus 9 ~ELeaE~ 15 (100)
.||-.|+
T Consensus 9 ~eLr~~L 15 (53)
T 1jei_A 9 TELTTLL 15 (53)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3444444
No 6
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=3.13 E-value=3.9e+02 Score=16.10 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=12.2
Q ss_pred HHHHHHHhHhHHHHHHHH
Q 040664 53 DMSKLLMSRKKRGLYEAM 70 (100)
Q Consensus 53 em~K~MMS~KkRKLYekM 70 (100)
+.+..+-.+..|+||+-.
T Consensus 35 ~aa~~L~v~~kRRiYDI~ 52 (76)
T 1cf7_A 35 LAADTLAVRQKRRIYDIT 52 (76)
T ss_dssp HHHHHTTTCCTHHHHHHH
T ss_pred HHHHHhCCccceehhhHH
Confidence 455555555889999854
No 7
>1tdp_A Carnobacteriocin B2 immunity protein; four-helix bundle, antimicrobial protein; NMR {Carnobacterium maltaromaticum} SCOP: a.29.8.1
Probab=2.80 E-value=4e+02 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.455 Sum_probs=10.4
Q ss_pred HhHhHHHHHHHHH
Q 040664 59 MSRKKRGLYEAMK 71 (100)
Q Consensus 59 MS~KkRKLYekMq 71 (100)
||-|+..||+.|.
T Consensus 1 m~~K~q~L~~~lS 13 (111)
T 1tdp_A 1 MDIKSQTLYLNLS 13 (111)
T ss_dssp CCSHHHHHHHHHH
T ss_pred CchHHHHHHHHHH
Confidence 6778888888775
No 8
>1tqe_X Histone deacetylase 9; MEF2, HDAC, CO-repressor, transcription, transcription/protein binding/DNA complex; 2.70A {Mus musculus}
Probab=2.52 E-value=5.8e+02 Score=12.76 Aligned_cols=15 Identities=13% Similarity=0.414 Sum_probs=8.3
Q ss_pred hHHHHHHHHhHhHHH
Q 040664 51 TEDMSKLLMSRKKRG 65 (100)
Q Consensus 51 e~em~K~MMS~KkRK 65 (100)
...+.-++++.++++
T Consensus 12 KqkLqefll~Kk~~~ 26 (26)
T 1tqe_X 12 KQKLQEFLLSKSATK 26 (26)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHhhhhcC
Confidence 345677788877764
No 9
>2k47_A Phosphoprotein, P protein, M1; flexible tail, chaperone, cytoplasm, RNA replication, virion; NMR {Vesicular stomatitis indiana virus}
Probab=2.43 E-value=6.4e+02 Score=15.71 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHhHhHHHHHHH--HHhh
Q 040664 53 DMSKLLMSRKKRGLYEA--MKKG 73 (100)
Q Consensus 53 em~K~MMS~KkRKLYek--Mqys 73 (100)
-|.-|+|-=+-.+||.+ |+||
T Consensus 48 ~~~AIilGLr~KkLyNQARvKY~ 70 (79)
T 2k47_A 48 HKEAILLGLRYKKLYNQARVKYS 70 (79)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHEE
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 46678999999999974 6665
No 10
>1gjj_A LAP2; inner nuclear membrane protein, lamin-associated polypeptide, LEM domain, multidimensional dipolar couplings; NMR {Homo sapiens} SCOP: a.140.1.1 a.140.1.1 PDB: 1h9e_A 1h9f_A
Probab=2.30 E-value=6e+02 Score=18.06 Aligned_cols=6 Identities=67% Similarity=1.032 Sum_probs=0.0
Q ss_pred HHHHHH
Q 040664 64 RGLYEA 69 (100)
Q Consensus 64 RKLYek 69 (100)
|+||++
T Consensus 139 RKLYEK 144 (168)
T 1gjj_A 139 RKLYEK 144 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Done!