Query 040664
Match_columns 100
No_of_seqs 103 out of 125
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 17:06:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040664.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040664hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rq8a_ d.68.4.1 (A:) Hypothet 20.7 12 0.00086 22.4 0.4 15 58-72 1-15 (96)
2 d1k1va_ a.37.1.1 (A:) Mafg {Mo 11.4 89 0.0065 16.2 2.4 15 78-92 23-37 (41)
3 d1jhfa1 a.4.5.2 (A:2-72) LexA 11.2 43 0.0031 18.5 1.1 18 58-75 2-19 (71)
4 d1z5za1 c.37.1.19 (A:663-906) 8.7 53 0.0038 21.3 1.0 16 59-74 10-25 (244)
5 d2odgc1 a.140.1.1 (C:2-47) Inn 3.9 1.8E+02 0.013 15.2 1.2 7 64-70 35-41 (46)
6 d1z3ix1 c.37.1.19 (X:390-735) 3.9 1.4E+02 0.01 20.7 1.0 14 59-72 21-34 (346)
7 d1dl0a_ g.3.6.2 (A:) J-atracot 3.0 1.1E+02 0.0078 15.2 -0.4 10 12-21 23-32 (37)
8 d1zyba2 b.82.3.2 (A:1-147) Pro 2.8 3.1E+02 0.023 15.4 1.7 13 58-70 132-144 (147)
9 d1dq3a2 d.50.3.1 (A:336-414) P 2.7 2.5E+02 0.018 15.9 1.0 17 55-71 51-67 (79)
10 d1dpua_ a.4.5.16 (A:) C-termin 2.5 3E+02 0.022 14.9 1.2 14 59-72 4-17 (69)
No 1
>d1rq8a_ d.68.4.1 (A:) Hypothetical protein SAV1595 {Staphylococcus aureus, (strain Mu50 / ATCC 700699) [TaxId: 1280]}
Probab=20.66 E-value=12 Score=22.44 Aligned_cols=15 Identities=7% Similarity=0.379 Sum_probs=11.9
Q ss_pred HHhHhHHHHHHHHHh
Q 040664 58 LMSRKKRGLYEAMKK 72 (100)
Q Consensus 58 MMS~KkRKLYekMqy 72 (100)
|||++||+.+..+-+
T Consensus 1 mLt~kqr~~LR~~ah 15 (96)
T d1rq8a_ 1 MLTGKQKRYLRSLAH 15 (96)
T ss_dssp CCCHHHHHHHHHHTT
T ss_pred CcCHHHHHHHHHHhc
Confidence 789999998877643
No 2
>d1k1va_ a.37.1.1 (A:) Mafg {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.35 E-value=89 Score=16.16 Aligned_cols=15 Identities=33% Similarity=0.565 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 040664 78 KAHVDLLKQRKKKIE 92 (100)
Q Consensus 78 ~~e~~~L~~Kkkkle 92 (100)
.+++..|+++||-|.
T Consensus 23 keev~~lKqrRRTLK 37 (41)
T d1k1va_ 23 KEEIIQLKQRRRTLK 37 (41)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhh
Confidence 467889999998763
No 3
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=11.23 E-value=43 Score=18.48 Aligned_cols=18 Identities=0% Similarity=0.342 Sum_probs=14.1
Q ss_pred HHhHhHHHHHHHHHhhHH
Q 040664 58 LMSRKKRGLYEAMKKGQE 75 (100)
Q Consensus 58 MMS~KkRKLYekMqys~~ 75 (100)
+||.+|+++|+.|..-..
T Consensus 2 ~LT~rQ~~vL~~I~~~~~ 19 (71)
T d1jhfa1 2 ALTARQQEVFDLIRDHIS 19 (71)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 578899999998875544
No 4
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=8.72 E-value=53 Score=21.31 Aligned_cols=16 Identities=13% Similarity=0.345 Sum_probs=13.1
Q ss_pred HhHhHHHHHHHHHhhH
Q 040664 59 MSRKKRGLYEAMKKGQ 74 (100)
Q Consensus 59 MS~KkRKLYekMqys~ 74 (100)
||..|+.+|+.|....
T Consensus 10 ls~~Q~~~Y~~~~~~~ 25 (244)
T d1z5za1 10 LTPEQAAMYKAEVENL 25 (244)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6889999999987543
No 5
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.92 E-value=1.8e+02 Score=15.22 Aligned_cols=7 Identities=14% Similarity=0.425 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 040664 64 RGLYEAM 70 (100)
Q Consensus 64 RKLYekM 70 (100)
++||+.|
T Consensus 35 kkl~e~~ 41 (46)
T d2odgc1 35 KKIFEYE 41 (46)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4445444
No 6
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=3.88 E-value=1.4e+02 Score=20.71 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=11.7
Q ss_pred HhHhHHHHHHHHHh
Q 040664 59 MSRKKRGLYEAMKK 72 (100)
Q Consensus 59 MS~KkRKLYekMqy 72 (100)
||--|+.||+.|..
T Consensus 21 LS~~Q~~lY~~~l~ 34 (346)
T d1z3ix1 21 LTPLQKELYKLFLK 34 (346)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 68889999998854
No 7
>d1dl0a_ g.3.6.2 (A:) J-atracotoxin-hv1c {Australian funnel-web spider (Hadronyche versuta) [TaxId: 6904]}
Probab=2.99 E-value=1.1e+02 Score=15.17 Aligned_cols=10 Identities=40% Similarity=0.697 Sum_probs=7.2
Q ss_pred HhhhcCCCcc
Q 040664 12 KMELDGFKYS 21 (100)
Q Consensus 12 eaE~~G~~~s 21 (100)
.+|..|++|-
T Consensus 23 kaesngvsyc 32 (37)
T d1dl0a_ 23 KAESNGVSYC 32 (37)
T ss_dssp EECTTSCEEE
T ss_pred ecccCCccee
Confidence 3677888875
No 8
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=2.81 E-value=3.1e+02 Score=15.36 Aligned_cols=13 Identities=23% Similarity=0.649 Sum_probs=10.5
Q ss_pred HHhHhHHHHHHHH
Q 040664 58 LMSRKKRGLYEAM 70 (100)
Q Consensus 58 MMS~KkRKLYekM 70 (100)
+||++-|.||+++
T Consensus 132 ~ls~r~~~l~~rl 144 (147)
T d1zyba2 132 IVSNRAQNLYSRL 144 (147)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 4788888888876
No 9
>d1dq3a2 d.50.3.1 (A:336-414) PI-Pfui intein middle domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=2.67 E-value=2.5e+02 Score=15.89 Aligned_cols=17 Identities=47% Similarity=0.608 Sum_probs=10.7
Q ss_pred HHHHHhHhHHHHHHHHH
Q 040664 55 SKLLMSRKKRGLYEAMK 71 (100)
Q Consensus 55 ~K~MMS~KkRKLYekMq 71 (100)
++..+-.==|+||+.-.
T Consensus 51 skavlvkmlrkly~~tk 67 (79)
T d1dq3a2 51 SKAVLVKMLRKLYEATK 67 (79)
T ss_dssp EHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhhc
Confidence 44445555599998643
No 10
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.47 E-value=3e+02 Score=14.93 Aligned_cols=14 Identities=7% Similarity=0.228 Sum_probs=11.2
Q ss_pred HhHhHHHHHHHHHh
Q 040664 59 MSRKKRGLYEAMKK 72 (100)
Q Consensus 59 MS~KkRKLYekMqy 72 (100)
||..|+.+|.-++-
T Consensus 4 Ls~~q~~V~~~i~s 17 (69)
T d1dpua_ 4 LTVAQNQVLNLIKA 17 (69)
T ss_dssp SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHh
Confidence 67888999988863
Done!