BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040665
(393 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5UNY4|YL728_MIMIV Uncharacterized protein L728 OS=Acanthamoeba polyphaga mimivirus
GN=MIMI_L728 PE=4 SV=1
Length = 572
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 93/220 (42%), Gaps = 47/220 (21%)
Query: 144 ISLAAKCCPSIDSSYDKTTLICE-------GIARRRVRDRLRK----------------- 179
ISL AK PS Y+K L+ G+ R+ R L K
Sbjct: 157 ISLCAKWAPSEKQHYNKAPLLIADSIRSQMGLTPRQYRKMLTKLRSHLQVLEMLMSTHQY 216
Query: 180 ------QVPYVLLF----------NCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPG 223
++P V L N Q K+ F + + L+ + GK + G
Sbjct: 217 DKIDFSKLPSVALMKMKNAFNRDTNSQGIKSD-FRVNLHTSYTKYLQDLSKGKTKVNTKG 275
Query: 224 GGGVGLLPHQIIKSLDAKNENGAEVAELQWSRMVEDMSKKGKLTNCLAVTDVSASMGGFP 283
+ PH+++ + + ++ E QW + + +S G N AV DVS SM G P
Sbjct: 276 -----IQPHELVGQY-LSSSDFDQLVESQWDAIKKGVSDSGTFNNVTAVVDVSGSMHGQP 329
Query: 284 MELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQGDEI 323
M+++IALG+LV+E + P G++ITF E P H + G +
Sbjct: 330 MQVAIALGILVAECTSGPYHGRVITFHEKPSWHHLTGSNL 369
>sp|A4FXD4|VATA_METM5 V-type ATP synthase alpha chain OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=atpA PE=3 SV=1
Length = 586
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 171 RRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLL 230
R+ R KQ P + L QR + F K G A IP P G G +
Sbjct: 194 RKPRPSKGKQPPVIPLITGQRVEDTFFGV------------AKGGAAAIPGPFGSGKTVT 241
Query: 231 PHQIIKSLDAK-------NENGAEVAE-LQWSRMVEDMSKKGKLTNCLAVTDVSASMGGF 282
HQ+ K D E G E+ E ++ ++D+ KL + + +++M
Sbjct: 242 QHQLAKWSDVDVVVYIGCGERGNEMTEVIEEFPHLDDIKTGNKLMDRTVLIANTSNMPVA 301
Query: 283 PMELSIALGLLVSELSEEPCKGKLIT 308
E S+ G+ ++E + G L+T
Sbjct: 302 AREASVYTGITIAEYFRDQGLGVLLT 327
>sp|Q57670|VATA_METJA V-type ATP synthase alpha chain OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=atpA PE=3 SV=2
Length = 587
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 171 RRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLL 230
R+ R K P + L QR + F K G A IP P G G +
Sbjct: 196 RKPRPYKEKLPPEIPLITGQRVEDTFFTL------------AKGGTAAIPGPFGSGKTVT 243
Query: 231 PHQIIKSLDAK-------NENGAEVAE-LQWSRMVEDMSKKGKLTNCLAVTDVSASMGGF 282
HQ+ K DA E G E+ E ++ +ED+ KL + + +++M
Sbjct: 244 QHQLAKWSDADVVVYIGCGERGNEMTEVIEEFPHLEDIRTGNKLMDRTVLIANTSNMPVA 303
Query: 283 PMELSIALGLLVSELSEEPCKGKLIT 308
E S+ G+ ++E + G L+T
Sbjct: 304 AREASVYTGITIAEYFRDMGYGVLLT 329
>sp|Q6LYE7|VATA_METMP V-type ATP synthase alpha chain OS=Methanococcus maripaludis
(strain S2 / LL) GN=atpA PE=3 SV=1
Length = 586
Score = 33.1 bits (74), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 159 DKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKAN 218
+K ++ + R+ R KQ P + L QR + F K G +
Sbjct: 182 EKEIMMMQKWPVRKPRPSKGKQAPVIPLITGQRVEDTFFGL------------AKGGASA 229
Query: 219 IPRPGGGGVGLLPHQIIKSLDAK-------NENGAEVAE-LQWSRMVEDMSKKGKLTNCL 270
IP P G G + HQ+ K D E G E+ E ++ ++D+ KL +
Sbjct: 230 IPGPFGSGKTVTQHQLAKWSDVDVVVYIGCGERGNEMTEVIEEFPHLDDIKTGNKLMDRT 289
Query: 271 AVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLIT 308
+ +++M E S+ G+ ++E + G L+T
Sbjct: 290 VLIANTSNMPVAAREASVYTGITIAEYFRDQGLGVLLT 327
>sp|A9AAQ4|VATA_METM6 V-type ATP synthase alpha chain OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=atpA PE=3 SV=1
Length = 586
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 20/158 (12%)
Query: 159 DKTTLICEGIARRRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKAN 218
+K ++ + R+ R KQ P + L QR + F K G +
Sbjct: 182 EKEIMMMQKWPVRKPRPSKGKQAPVIPLITGQRVEDTFFGL------------AKGGASA 229
Query: 219 IPRPGGGGVGLLPHQIIKSLDAK-------NENGAEVAE-LQWSRMVEDMSKKGKLTNCL 270
IP P G G + HQ+ K D E G E+ E ++ ++D+ KL +
Sbjct: 230 IPGPFGSGKTVTQHQLAKWSDVDVVVYIGCGERGNEMTEVIEEFPHLDDIKTGNKLMDRT 289
Query: 271 AVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLIT 308
+ +++M E S+ G+ ++E + G L+T
Sbjct: 290 VLIANTSNMPVAAREASVYTGITIAEYFRDQGLGVLLT 327
>sp|A6VFZ2|VATA_METM7 V-type ATP synthase alpha chain OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=atpA PE=3 SV=1
Length = 586
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 58/146 (39%), Gaps = 20/146 (13%)
Query: 171 RRVRDRLRKQVPYVLLFNCQRTKTPLFEKHDKEMFKDILEKVKSGKANIPRPGGGGVGLL 230
R+ R KQ P + L QR + F K G + IP P G G +
Sbjct: 194 RKPRPSKGKQAPVIPLITGQRVEDTFFGL------------AKGGASAIPGPFGSGKTVT 241
Query: 231 PHQIIKSLDAK-------NENGAEVAE-LQWSRMVEDMSKKGKLTNCLAVTDVSASMGGF 282
HQ+ K D E G E+ E ++ ++D+ KL + + +++M
Sbjct: 242 QHQLAKWSDVDVVVYIGCGERGNEMTEVIEEFPHLDDIKTGNKLMDRTVLIANTSNMPVA 301
Query: 283 PMELSIALGLLVSELSEEPCKGKLIT 308
E S+ G+ ++E + G L+T
Sbjct: 302 AREASVYTGITIAEYFRDQGLGVLLT 327
>sp|A0AIK1|RNY_LISW6 Ribonuclease Y OS=Listeria welshimeri serovar 6b (strain ATCC 35897
/ DSM 20650 / SLCC5334) GN=rny PE=3 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 74 RGRKFDDSEEED---QQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS 130
RGR+ + + E+ Q+EE +++KD + +SK EA + RKE I+K ++ +E+ S
Sbjct: 78 RGRRTETQKAENRLLQREENLDRKD----TSLSKREATLERKEESISKRQQQIEEKESKL 133
Query: 131 SDMKKLNSEDLSQISLAAK 149
++M + +L +IS +K
Sbjct: 134 AEMIQAEQTELERISALSK 152
>sp|P0DJP2|RNY_LISMO Ribonuclease Y OS=Listeria monocytogenes serovar 1/2a (strain ATCC
BAA-679 / EGD-e) GN=rny PE=3 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 74 RGRKFDDSEEED---QQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS 130
RGR+ + + E+ Q+EE +++KD + +SK EA + RKE I+K ++ +E+ S
Sbjct: 78 RGRRTETQKAENRLLQREENLDRKD----TSLSKREATLERKEESISKRQQQIEEKESKL 133
Query: 131 SDMKKLNSEDLSQISLAAK 149
++M + +L +IS +K
Sbjct: 134 AEMIQAEQTELERISALSK 152
>sp|Q71ZS1|RNY_LISMF Ribonuclease Y OS=Listeria monocytogenes serotype 4b (strain F2365)
GN=rny PE=3 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 74 RGRKFDDSEEED---QQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS 130
RGR+ + + E+ Q+EE +++KD + +SK EA + RKE I+K ++ +E+ S
Sbjct: 78 RGRRTETQKAENRLLQREENLDRKD----TSLSKREATLERKEESISKRQQQIEEKESKL 133
Query: 131 SDMKKLNSEDLSQISLAAK 149
++M + +L +IS +K
Sbjct: 134 AEMIQAEQTELERISALSK 152
>sp|G2JZ15|RNY_LISM4 Ribonuclease Y OS=Listeria monocytogenes serotype 1/2a (strain
10403S) GN=rny PE=3 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 74 RGRKFDDSEEED---QQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS 130
RGR+ + + E+ Q+EE +++KD + +SK EA + RKE I+K ++ +E+ S
Sbjct: 78 RGRRTETQKAENRLLQREENLDRKD----TSLSKREATLERKEESISKRQQQIEEKESKL 133
Query: 131 SDMKKLNSEDLSQISLAAK 149
++M + +L +IS +K
Sbjct: 134 AEMIQAEQTELERISALSK 152
>sp|P0A4Q7|RNY_LISIN Ribonuclease Y OS=Listeria innocua serovar 6a (strain CLIP 11262)
GN=rny PE=3 SV=1
Length = 520
Score = 32.0 bits (71), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 74 RGRKFDDSEEED---QQEEVVEKKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDS 130
RGR+ + + E+ Q+EE +++KD + +SK EA + RKE I+K ++ +E+ S
Sbjct: 78 RGRRTETQKAENRLLQREENLDRKD----TSLSKREATLERKEESISKRQQQIEEKESKL 133
Query: 131 SDMKKLNSEDLSQISLAAK 149
++M + +L +IS +K
Sbjct: 134 AEMIQAEQTELERISALSK 152
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 38/156 (24%)
Query: 27 YKKQKKTL-ALNSSAFVDFGYLKDLTEILYRILEGPERTRGKIKRGRKRGRKFDDSEEED 85
Y K K TL ++N++ ++ Y+ D R L P++ I R R
Sbjct: 462 YHKCKYTLESINAAVYLSARYIAD------RHL--PDKAIDLIDEAGSRARM-------- 505
Query: 86 QQEEVVEKKDEEMCSVISK------EEARVLRKEREIAKARKALEKYSSDSSDMKKLNSE 139
E ++K EE CS++SK +E R ++ E+A K KYS + +D E
Sbjct: 506 ---ESFKRKKEEQCSILSKSPDEYWQEIRAVQNMHEVALTNKV--KYSLNQND-----QE 555
Query: 140 DLSQISLAA--KCCPS--IDSSYDKTTLI-CEGIAR 170
D I L K P+ + +S DK +L+ E IAR
Sbjct: 556 DAVDIELVGEDKTSPASMLSTSTDKPSLVGSEEIAR 591
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.133 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 142,404,120
Number of Sequences: 539616
Number of extensions: 6113008
Number of successful extensions: 41171
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 309
Number of HSP's that attempted gapping in prelim test: 38698
Number of HSP's gapped (non-prelim): 2035
length of query: 393
length of database: 191,569,459
effective HSP length: 119
effective length of query: 274
effective length of database: 127,355,155
effective search space: 34895312470
effective search space used: 34895312470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)