Query 040665
Match_columns 393
No_of_seqs 133 out of 154
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 17:07:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040665.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040665hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nvo_A RO sixty-related protei 99.5 1.6E-14 5.6E-19 149.5 10.5 169 186-363 270-528 (535)
2 1yvr_A RO autoantigen, 60-kDa 99.4 9.3E-13 3.2E-17 135.8 15.8 269 15-363 145-532 (538)
3 2x31_A Magnesium-chelatase 60 95.4 0.016 5.5E-07 50.0 5.1 49 266-314 5-55 (189)
4 1q0p_A Complement factor B; VO 93.3 0.078 2.7E-06 46.4 4.6 52 266-317 15-69 (223)
5 1atz_A VON willebrand factor; 93.2 0.096 3.3E-06 45.3 5.1 51 266-316 5-58 (189)
6 1mjn_A Integrin alpha-L; rossm 93.2 0.072 2.5E-06 46.1 4.2 49 268-316 4-53 (179)
7 1mf7_A Integrin alpha M; cell 93.1 0.069 2.4E-06 46.3 3.9 50 267-316 6-56 (194)
8 4hqo_A Sporozoite surface prot 93.0 0.085 2.9E-06 48.9 4.6 50 267-316 19-72 (266)
9 1shu_X Anthrax toxin receptor 92.7 0.082 2.8E-06 44.9 3.8 50 267-316 7-56 (182)
10 2xgg_A Microneme protein 2; A/ 92.5 0.1 3.6E-06 44.9 4.2 53 264-316 15-70 (178)
11 1ijb_A VON willebrand factor; 92.3 0.14 4.7E-06 45.2 4.9 50 267-316 14-66 (202)
12 3ibs_A Conserved hypothetical 92.1 0.13 4.3E-06 45.1 4.4 49 266-316 11-65 (218)
13 3zqk_A VON willebrand factor; 90.9 0.21 7.2E-06 43.8 4.4 53 264-316 19-74 (199)
14 3n2n_F Anthrax toxin receptor 90.8 0.18 6E-06 42.9 3.8 50 267-316 8-57 (185)
15 1n3y_A Integrin alpha-X; alpha 90.8 0.2 7E-06 43.1 4.2 50 267-316 10-60 (198)
16 1v7p_C Integrin alpha-2; snake 90.6 0.37 1.3E-05 42.0 5.7 48 267-316 7-57 (200)
17 4hqf_A Thrombospondin-related 90.1 0.27 9.3E-06 45.6 4.7 51 266-316 21-75 (281)
18 4fx5_A VON willebrand factor t 89.8 0.2 7E-06 50.9 3.8 52 264-316 75-129 (464)
19 3rag_A Uncharacterized protein 89.2 0.67 2.3E-05 44.0 6.6 55 257-313 126-183 (242)
20 2b2x_A Integrin alpha-1; compu 89.2 0.54 1.9E-05 41.7 5.8 50 265-316 21-73 (223)
21 2odp_A Complement C2; C3/C5 co 88.5 0.25 8.6E-06 49.2 3.4 50 267-316 10-62 (509)
22 1pt6_A Integrin alpha-1; cell 88.2 0.57 2E-05 41.2 5.2 48 267-316 8-58 (213)
23 1rrk_A Complement factor B; BB 88.0 0.37 1.3E-05 47.7 4.2 50 268-317 3-55 (497)
24 3hrz_D Complement factor B; se 85.2 0.6 2.1E-05 48.6 4.2 50 267-316 244-296 (741)
25 4b4t_W RPN10, 26S proteasome r 69.8 5 0.00017 38.3 5.1 50 266-315 3-61 (268)
26 3k6s_A Integrin alpha-X; cell 67.0 4.7 0.00016 45.3 4.8 49 268-316 132-181 (1095)
27 2ww8_A RRGA, cell WALL surface 52.6 8.5 0.00029 42.5 3.6 49 266-314 224-280 (893)
28 2x5n_A SPRPN10, 26S proteasome 27.8 17 0.00058 32.3 0.8 51 266-316 2-61 (192)
29 2oyy_A Hexameric cytochrome; a 22.8 85 0.0029 24.8 3.9 33 149-181 4-46 (76)
30 1jey_B KU80; double-strand DNA 21.9 69 0.0024 33.0 4.2 50 264-313 5-63 (565)
No 1
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=99.53 E-value=1.6e-14 Score=149.52 Aligned_cols=169 Identities=16% Similarity=0.167 Sum_probs=125.6
Q ss_pred chHHHHhchHHHhhh------CHHHHHHHHHHhhcCCccccCCCCCCcccChHHHHHHhhhccccchhHHHHHHH---HH
Q 040665 186 LFNCQRTKTPLFEKH------DKEMFKDILEKVKSGKANIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWS---RM 256 (393)
Q Consensus 186 py~AM~~Y~~aF~kh------D~eRf~~yL~~V~~GkakI~a~~~~~~~L~Pheiv~~~~~~~~~~~~vae~QWk---~l 256 (393)
||.||.+|-..|.+| |++|+++|++.+. ++.+|+. + .++|+++...+..-....+.+-..+|+ ++
T Consensus 270 p~~AllrNlr~~~~~g~~~~~~~~~~e~v~~~L~-d~~~v~~---s--~~~Pf~~~~a~r~y~~G~dd~r~idW~~~ar~ 343 (535)
T 2nvo_A 270 GLTWLLRNLGNLGRVGVLTPNDSATVQAVIERLT-DPAALKR---G--RIHPLDALKARLVYAQGQGVRGKGTWLPVPRV 343 (535)
T ss_dssp CHHHHHHHHHHHHHTTSSCTTCHHHHHHHHHHHT-CHHHHHH---T--TCCHHHHHHHHHHHHTSBCSTTCCBCCCCHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHhC-CHhhHhh---c--CCCcHHHHHHHHHhhcccCccCCCCCcccHHH
Confidence 999999999999999 6779999999998 6778888 7 899999999887311101112223452 22
Q ss_pred --------HHHHhhc-CCCcceEEEEecCCCCCC---------chhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeEee
Q 040665 257 --------VEDMSKK-GKLTNCLAVTDVSASMGG---------FPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLI 318 (393)
Q Consensus 257 --------v~~l~~~-g~l~n~iaV~DvSGSM~g---------~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~~i 318 (393)
+...... ..-.+.++++||||||.+ +++++|.+|+++....+. +-.+|+||..+..+.+
T Consensus 344 ~~al~~a~~~~~~~~~~~~~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la~~~~r~~d---~v~lv~Fs~~~~~~~~ 420 (535)
T 2nvo_A 344 VDALEEAFTLAFGNVQPANTRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMSLIALRTEP---DALTMGFAEQFRPLGI 420 (535)
T ss_dssp HHHHHHHHHHHGGGCCCCCSEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHHHHHHHHSS---EEEEEEEBSSEEECCC
T ss_pred HHHHHHHHHHHhhcCCCCCceEEEEEECCccccCCCCCCCCcccHHHHHHHHHHHHcCcCC---ceEEEEECCcceEcCC
Confidence 1111110 123567778899999975 358899999988887666 6789999987644333
Q ss_pred cC------------------CCC---------------------------------------------CceeEEeeCCCC
Q 040665 319 QG------------------DEI---------------------------------------------NPETVFWNLRYS 335 (393)
Q Consensus 319 ~g------------------~~l---------------------------------------------~PeiVFWNl~~~ 335 (393)
++ .++ -|++|+||+.+.
T Consensus 421 ~~~~~l~~~l~~l~~~~~ggTdi~~~l~~a~~~~~~~~~vIliTD~~~~~g~~~~~~al~~~r~~~~~~~klv~i~l~~~ 500 (535)
T 2nvo_A 421 TPRDTLESAMQKAQSVSFGGTDCAQPILWAAQERLDVDTFVVYTDNETWAGQVHPTVALDQYAQKMGRAPKLIVVGLTAT 500 (535)
T ss_dssp CTTCCHHHHHHHTCCSSBCCCCTTHHHHHHHHTTCCCSEEEEEESSCCCCCSSCHHHHHHHHHHHHSCCCEEEEEETTCS
T ss_pred CcchhHHHHHHHHhhCCCCCccHHHHHHHHHHhcCCCCEEEEEeCCCccCCCCCHHHHHHHHHHhhCCCCeEEEEeccCC
Confidence 22 122 689999999999
Q ss_pred CCCCccccCCCeEEeccCCHHHHHHHHh
Q 040665 336 PSTPVVAKQTGVAMLNGFSKNLLSVFLN 363 (393)
Q Consensus 336 ~~~PV~~~~~GvaLVSGfS~~llk~fl~ 363 (393)
+..|++.+.+|+++|+|||+++++.+-+
T Consensus 501 ~~~~~~~~~~~~~~i~g~se~~l~~Ia~ 528 (535)
T 2nvo_A 501 EFSIADPQRRDMLDVVGFDAAAPNVMTA 528 (535)
T ss_dssp CCCCSCTTCSSEEEEEECCTTHHHHHHH
T ss_pred CcccCCCCCCCceeeeCCCHHHHHHHHH
Confidence 8899988999999999999999998853
No 2
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=99.45 E-value=9.3e-13 Score=135.84 Aligned_cols=269 Identities=14% Similarity=0.172 Sum_probs=170.6
Q ss_pred chHHHHHHHHHHhhhCHHHHHhchhhhccCCch--hhHHHHHHHHhcCCccccccccccccCCCCCCCchhHHHHHHHHh
Q 040665 15 SAPMYFSSAISLYKKQKKTLALNSSAFVDFGYL--KDLTEILYRILEGPERTRGKIKRGRKRGRKFDDSEEEDQQEEVVE 92 (393)
Q Consensus 15 ~r~~Fy~a~~WL~~~HP~TL~~NL~~l~~~Gyw--KDLleLL~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (393)
+|..+...+.|+.+.+|..|+.+|......|.| ||++.+.....+ .
T Consensus 145 ~r~~r~av~~w~~~~~~~~la~~l~ky~~~~~~~~~Dll~l~h~~~~---~----------------------------- 192 (538)
T 1yvr_A 145 GRALRKAVSDWYNTKDALNLAMAVTKYKQRNGWSHKDLLRLSHIKPA---N----------------------------- 192 (538)
T ss_dssp CHHHHHHHHHHHHTSCHHHHHHHHTSCCCSSSCCHHHHHHHTTCCCS---S-----------------------------
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHhccccCCcHHHHhhhcCCCCc---H-----------------------------
Confidence 589999999999999999999999999999999 999877652110 0
Q ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHhhccCCcccccccccccCCCCCCcchhhHHHHHHHHH-
Q 040665 93 KKDEEMCSVISKEEARVLRKEREIAKARKALEKYSSDSSDMKKLNSEDLSQISLAAKCCPSIDSSYDKTTLICEGIARR- 171 (393)
Q Consensus 93 ~~~~~~~~~i~~~~a~~~r~~~~~~~a~~~l~~~~~d~~Dl~~L~~g~~~~iSL~AKW~PS~~~s~d~~t~l~~~iA~~- 171 (393)
+. .. ++.+|-. ++.+ . ++||+|+.+.+++... +.+.|...
T Consensus 193 ~~-----~~--------------------l~~~~l~--~~~~--------~---~~k~~~~~~~~~~~~~-~~~~~~~~~ 233 (538)
T 1yvr_A 193 EG-----LT--------------------MVAKYVS--KGWK--------E---VQEAYKEKELSPETEK-VLKYLEATE 233 (538)
T ss_dssp HH-----HH--------------------HHHHHHH--TCHH--------H---HHHHTTTCCCCHHHHH-HHHHHHHHH
T ss_pred HH-----HH--------------------HHHHHhc--CCHH--------H---HHHhhccccccccHHH-HHHHHHHHH
Confidence 00 00 0110100 1111 1 3899999988764221 22222211
Q ss_pred ---------HHHHHHHhh-CC------------c-------ccchHHHHhchHHHhhhC-----HHHHHHHHHHhhcCCc
Q 040665 172 ---------RVRDRLRKQ-VP------------Y-------VLLFNCQRTKTPLFEKHD-----KEMFKDILEKVKSGKA 217 (393)
Q Consensus 172 ---------~~~~~LRk~-ip------------E-------~~py~AM~~Y~~aF~khD-----~eRf~~yL~~V~~Gka 217 (393)
++...++++ ++ + ..||.||.++-..|.+++ .++++++++.+.. +.
T Consensus 234 ~~~~~~~~~~~~~~i~~~~~t~E~~~~~l~~~~~~we~l~~~~~~~allrnlr~~~~~g~~~~~~~~~~~v~~~L~~-~~ 312 (538)
T 1yvr_A 234 RVKRTKDELEIIHLIDEYRLVREHLLTIHLKSKEIWKSLLQDMPLTALLRNLGKMTADSVLAPASSEVSSVCERLTN-EK 312 (538)
T ss_dssp HHHTCCCHHHHHHHHHHHCCCGGGSCTTGGGCHHHHHHHHHTCCHHHHHHHHHHHHHTTTTCTTCHHHHHHHHHHTC-HH
T ss_pred HHHhcCCHHHHHHHHHhcCCCHhhchhhhcCCHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhcC-HH
Confidence 455566664 22 1 129999999999999987 6799999999998 66
Q ss_pred cccCCCCCCcccChHHHHHHhhhccccchhHHHHHHH------HHHH-H-Hhhc----CCCcceEEEEecCCCCCC----
Q 040665 218 NIPRPGGGGVGLLPHQIIKSLDAKNENGAEVAELQWS------RMVE-D-MSKK----GKLTNCLAVTDVSASMGG---- 281 (393)
Q Consensus 218 kI~a~~~~~~~L~Pheiv~~~~~~~~~~~~vae~QWk------~lv~-~-l~~~----g~l~n~iaV~DvSGSM~g---- 281 (393)
++.. + .++|+.+...+..-....+..-...|+ ...+ . .+.. ..-.+.+.|+|+||||.+
T Consensus 313 ~v~~---s--~~~P~~~~~a~r~y~~g~~~~~~i~w~~~~r~~~al~~~~~~~~~~~~~~~~~v~lvvD~SgSM~~~~~~ 387 (538)
T 1yvr_A 313 LLKK---A--RIHPFHILVALETYKKGHGNRGKLRWIPDTSIVEALDNAFYKSFKLVEPTGKRFLLAIDVSASMNQRVLG 387 (538)
T ss_dssp HHHH---T--TCCHHHHHHHHHHHHHCC-----CCCCCCHHHHHHHHHHHHHTSCCCCCCCCCEEEEEECSGGGGSBSTT
T ss_pred hHhh---c--cCCcHHHHHHHHHhhccCCcCCCcCCCcchhHHHHHHHHHHHHHhhcCCCCceEEEEEECccccCCCCCC
Confidence 7777 6 799999998887311001111111222 1111 1 1111 234578889999999975
Q ss_pred ---chhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeEeec-----------------C-CCC-----------------
Q 040665 282 ---FPMELSIALGLLVSELSEEPCKGKLITFSENPEIHLIQ-----------------G-DEI----------------- 323 (393)
Q Consensus 282 ---~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~~i~-----------------g-~~l----------------- 323 (393)
...++|.+|++....-+. +=.+|+|++....+.++ | .++
T Consensus 388 ~~l~~~~~Aa~l~~~~~~~~d---~vglv~Fs~~~~~~~~t~~~~l~~~l~~l~~~~~GgT~i~~aL~~a~~~~~~~~~i 464 (538)
T 1yvr_A 388 SILNASVVAAAMCMLVARTEK---DSHMVAFSDEMLPCPITVNMLLHEVVEKMSDITMGSTDCALPMLWAQKTNTAADIF 464 (538)
T ss_dssp SSCBHHHHHHHHHHHHHHHCS---SEEEEEESSSEECCSCCTTSCHHHHHHHHTTCCCSCCCTTHHHHHHHHTTCCCSEE
T ss_pred CcHHHHHHHHHHHHHHhccCC---ceEEEEECCCceEcCCCCcccHHHHHHHHhcCCCCCCcHHHHHHHHHhccCCCCEE
Confidence 235556666665554322 45678888643222111 1 122
Q ss_pred ----------------------------CceeEEeeCCCCCCCCccccCCCeEEeccCCHHHHHHHHh
Q 040665 324 ----------------------------NPETVFWNLRYSPSTPVVAKQTGVAMLNGFSKNLLSVFLN 363 (393)
Q Consensus 324 ----------------------------~PeiVFWNl~~~~~~PV~~~~~GvaLVSGfS~~llk~fl~ 363 (393)
-+.+++|++.+....|+..+..|+..++|||+++|+++-+
T Consensus 465 IliTDg~~~~g~~~~~~~l~~~~~~~~~~v~l~~igig~~~~~~~~~~~~~~~~i~g~~e~~l~~Ia~ 532 (538)
T 1yvr_A 465 IVFTDCETNVEDVHPATALKQYREKMGIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRN 532 (538)
T ss_dssp EEEECCCCCSSSCCHHHHHHHHHHHHTCCCEEEEEECSSSSEESSCTTCTTEEEEETTCTTHHHHHHH
T ss_pred EEEcCCCCCCCCCCHHHHHHHHHHHhCCCcEEEEEEecCCCCcccCCCCCCceeeccCCHHHHHHHHH
Confidence 2345899999877778877899999999999999998853
No 3
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=95.44 E-value=0.016 Score=50.01 Aligned_cols=49 Identities=16% Similarity=0.007 Sum_probs=33.7
Q ss_pred CcceEEEEecCCCCCCchhHHHHHHHHHHh-hcCcCcCCCeeEEecC-CCe
Q 040665 266 LTNCLAVTDVSASMGGFPMELSIALGLLVS-ELSEEPCKGKLITFSE-NPE 314 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g~Pm~vaiaLgLl~a-El~~~pfk~~~ITFS~-~P~ 314 (393)
-.+.+.|+|+||||.|..++.+......+. .+..+.-+=.+|+|++ .++
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~~~~~~~v~lv~f~~~~~~ 55 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRAYAARDHVSLITFRGTAAQ 55 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHSCTTTSCCCEEEESBSCCC
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHhcCCCcEEEEEEECCCCce
Confidence 457889999999999888888775554444 4534445667999996 443
No 4
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=93.26 E-value=0.078 Score=46.38 Aligned_cols=52 Identities=23% Similarity=0.230 Sum_probs=36.3
Q ss_pred CcceEEEEecCCCCCCchhHHHHH-HHHHHhhcCcCc--CCCeeEEecCCCeeEe
Q 040665 266 LTNCLAVTDVSASMGGFPMELSIA-LGLLVSELSEEP--CKGKLITFSENPEIHL 317 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~~p--fk~~~ITFS~~P~~~~ 317 (393)
--+.+.|.|+||||.+..++.+.. +.-++..+...+ -+=.+|+|++.++.+.
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~~~~~ 69 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYPKIWV 69 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSEEEEE
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCccceee
Confidence 347888999999999877776663 444555554322 2445799999987753
No 5
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=93.25 E-value=0.096 Score=45.27 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=36.8
Q ss_pred CcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665 266 LTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH 316 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~ 316 (393)
--+.+.|+|+||||.+..++.+- ++.-++..+..+| -+=.+|+|+++++.+
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~~~~ 58 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSITTID 58 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcceEE
Confidence 34778899999999987777665 4555666666444 344579999998764
No 6
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=93.17 E-value=0.072 Score=46.08 Aligned_cols=49 Identities=12% Similarity=0.067 Sum_probs=34.1
Q ss_pred ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
+.+-|+|+||||.+..++-+. ++.-++..+.....+=.+|+||++++.+
T Consensus 4 divfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~rv~vv~fs~~~~~~ 53 (179)
T 1mjn_A 4 DLVFLFDGSMSLQPDEFQKILDFMKDVMKKCSNTSYQFAAVQFSTSYKTE 53 (179)
T ss_dssp EEEEEEECBTTCCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSSEEEE
T ss_pred cEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEECCceeEE
Confidence 567799999999986555443 3444556664333455779999998764
No 7
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=93.09 E-value=0.069 Score=46.27 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=35.4
Q ss_pred cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
-+.+.|.|+||||.+..++.+. ++.-++..+..+..+=.+|+|+++++.+
T Consensus 6 ~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~v~vv~f~~~~~~~ 56 (194)
T 1mf7_A 6 SDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQLKKSKTLFSLMQYSEEFRIH 56 (194)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCCTTEEEEEEEESSSEEEE
T ss_pred eeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEEecCCceEE
Confidence 3678899999999986655544 4455666666333455789999998754
No 8
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=93.01 E-value=0.085 Score=48.91 Aligned_cols=50 Identities=20% Similarity=0.072 Sum_probs=37.0
Q ss_pred cceEEEEecCCCCCCchh--HHHHHHHHHHhhcCcCcCCCee--EEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPM--ELSIALGLLVSELSEEPCKGKL--ITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm--~vaiaLgLl~aEl~~~pfk~~~--ITFS~~P~~~ 316 (393)
-|.+.|.|+||||.+..+ .+--++.-++..+.-+|-..+| |+|+++++.+
T Consensus 19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~~~~ 72 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYTTEL 72 (266)
T ss_dssp EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSEEEE
T ss_pred eeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCcceE
Confidence 467889999999997665 2444666777788766655555 9999998754
No 9
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=92.70 E-value=0.082 Score=44.88 Aligned_cols=50 Identities=20% Similarity=0.150 Sum_probs=31.0
Q ss_pred cceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
-+.+.|+|+||||.+..+...-.+--++..+-.+.-+=.+|+|+++++.+
T Consensus 7 ~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~ 56 (182)
T 1shu_X 7 FDLYFVLDKSGSVANNWIEIYNFVQQLAERFVSPEMRLSFIVFSSQATII 56 (182)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEE
T ss_pred eeEEEEEECCCCcccCHHHHHHHHHHHHHHhcCCCceEEEEEeCCCceEE
Confidence 47789999999999865532222222233332333444579999998754
No 10
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=92.49 E-value=0.1 Score=44.93 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=37.2
Q ss_pred CCCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665 264 GKLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH 316 (393)
Q Consensus 264 g~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~ 316 (393)
..--+.+.|.|+||||.+..++.+. ++.-++..+..+| .+=.+|+|+++++.+
T Consensus 15 ~~~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~~~~ 70 (178)
T 2xgg_A 15 TNQLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDVHLQ 70 (178)
T ss_dssp TTCEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSEEEE
T ss_pred CCCeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCceEEE
Confidence 3345788999999999876665544 4555666776443 444679999998653
No 11
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=92.35 E-value=0.14 Score=45.15 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=34.9
Q ss_pred cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcC--CCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPC--KGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pf--k~~~ITFS~~P~~~ 316 (393)
-+.+.|.|+||||.+..++.+. ++.-++..+.-+|= +=.+|+|+++++.+
T Consensus 14 ~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~~~~ 66 (202)
T 1ijb_A 14 LDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGSHAY 66 (202)
T ss_dssp EEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCceEE
Confidence 4678899999999986666554 35556666664443 33469999998754
No 12
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=92.14 E-value=0.13 Score=45.07 Aligned_cols=49 Identities=27% Similarity=0.252 Sum_probs=34.1
Q ss_pred CcceEEEEecCCCCCCc-----hhHHHHHH-HHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 266 LTNCLAVTDVSASMGGF-----PMELSIAL-GLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g~-----Pm~vaiaL-gLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
--+.+.|+|+||||.+. .++.+-.. .-++..+.. -+=.+|+|+.+++.+
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~~~~~--~~v~lv~F~~~~~~~ 65 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVDELDN--DKVGMIVFAGDAFTQ 65 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHHTCSS--CEEEEEEESSSEEEE
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHHhCCC--CeEEEEEECCCceEe
Confidence 45788999999999974 67766643 444455532 233589999998765
No 13
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=90.86 E-value=0.21 Score=43.84 Aligned_cols=53 Identities=9% Similarity=0.097 Sum_probs=37.7
Q ss_pred CCCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665 264 GKLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH 316 (393)
Q Consensus 264 g~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~ 316 (393)
..--+.+.|.|+||||.+..++-+. ++.-++..+.-+| -+=.+|+||++++.+
T Consensus 19 ~~~~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~~~~ 74 (199)
T 3zqk_A 19 SMVLDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMVTVE 74 (199)
T ss_dssp CCCCEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSEEEE
T ss_pred CCCcCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcccEE
Confidence 3456788899999999986665554 4455666776444 344679999998765
No 14
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=90.81 E-value=0.18 Score=42.89 Aligned_cols=50 Identities=16% Similarity=0.063 Sum_probs=29.6
Q ss_pred cceEEEEecCCCCCCchhHHHHHHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSIALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vaiaLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
-|.+.|.|+||||.+.--..--.+--++..+-.+--+=.+|+|+++++.+
T Consensus 8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~~~~~~~v~lv~f~~~~~~~ 57 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKFISPQLRMSFIVFSTRGTTL 57 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHCCCTTEEEEEEEESSSEEEE
T ss_pred eeEEEEEeCCCChhhhHHHHHHHHHHHHHHhCCCCcEEEEEEEecCceEE
Confidence 36788999999998631111112222333332333455689999998765
No 15
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=90.76 E-value=0.2 Score=43.07 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=34.3
Q ss_pred cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
-+.+.|+|+||||.+..++... ++--++..+..+.-+=.+|+|+++++.+
T Consensus 10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~~~~~~v~lv~f~~~~~~~ 60 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTH 60 (198)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSCTTTEEEEEEEESSSEEEE
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCccEE
Confidence 4678899999999986555444 3344555665334455679999997654
No 16
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=90.60 E-value=0.37 Score=42.03 Aligned_cols=48 Identities=25% Similarity=0.310 Sum_probs=32.2
Q ss_pred cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~ 316 (393)
-+.+.|+|+||||.. ++.+. .+.-++..+...| -+=.+|+|+++++.+
T Consensus 7 ~div~vlD~SgSm~~--~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~~~~ 57 (200)
T 1v7p_C 7 IDVVVVCDESNSIYP--WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVV 57 (200)
T ss_dssp EEEEEEEECCTTCCC--HHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSEEEE
T ss_pred ccEEEEEECCCCccc--HHHHHHHHHHHHHhcCCCCCceEEEEEEECCCceEE
Confidence 467889999999984 44443 3444556665434 333569999998753
No 17
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=90.10 E-value=0.27 Score=45.57 Aligned_cols=51 Identities=16% Similarity=0.023 Sum_probs=36.0
Q ss_pred CcceEEEEecCCCCCCchh-HHH-HHHHHHHhhcCcCc--CCCeeEEecCCCeeE
Q 040665 266 LTNCLAVTDVSASMGGFPM-ELS-IALGLLVSELSEEP--CKGKLITFSENPEIH 316 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g~Pm-~va-iaLgLl~aEl~~~p--fk~~~ITFS~~P~~~ 316 (393)
--|.+.|.|+||||.+..+ +.+ -++.-++..+...+ -+=.+|+|+++++.+
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~~~~ 75 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNAREI 75 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTEEEE
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCceEE
Confidence 3477899999999998655 433 35566677776543 344589999998654
No 18
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=89.75 E-value=0.2 Score=50.87 Aligned_cols=52 Identities=17% Similarity=0.153 Sum_probs=38.2
Q ss_pred CCCcceEEEEecCCCCC--CchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 264 GKLTNCLAVTDVSASMG--GFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 264 g~l~n~iaV~DvSGSM~--g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
+.--+.+.|.|+||||. +..|+.+. ++..++..+..+. +=.+|+|+++++.+
T Consensus 75 ~~~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~L~~~d-rv~lV~Fs~~a~~~ 129 (464)
T 4fx5_A 75 GSENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGA-FFAVVAGTEGARVV 129 (464)
T ss_dssp -CCEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHHSCTTC-EEEEEEESSSEEEE
T ss_pred CCCceEEEEEEcCcccCCCCchHHHHHHHHHHHHHhCCCCC-EEEEEEEcCceEEE
Confidence 34567889999999999 88888776 5555566665433 33579999998865
No 19
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=89.21 E-value=0.67 Score=44.04 Aligned_cols=55 Identities=22% Similarity=0.165 Sum_probs=34.9
Q ss_pred HHHHhhcCCCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCC--eeEEecCCC
Q 040665 257 VEDMSKKGKLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKG--KLITFSENP 313 (393)
Q Consensus 257 v~~l~~~g~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~--~~ITFS~~P 313 (393)
|+.+-+. .--+|+.++|+||||.+. |..+- ++--++..+...+-++ .+|||+.+|
T Consensus 126 ~~~l~e~-~~~~vvfLVDtSgSM~~k-l~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~ 183 (242)
T 3rag_A 126 VEKLEDE-VALHLVVCLDTSASMRDK-IPTVREAVRDLALSLKVRSGPLAVSVIAFPGKG 183 (242)
T ss_dssp HHHHHHH-SCEEEEEEEECSGGGTTT-HHHHHHHHHHHHHHHTTSSSCEEEEEEEESCST
T ss_pred hhhhccc-CCCCEEEEEECcccHHHH-HHHHHHHHHHHHHHHhccCCCcEEEEEEECCCC
Confidence 4444333 346889999999999863 44333 4444555555444344 469999998
No 20
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=89.21 E-value=0.54 Score=41.74 Aligned_cols=50 Identities=20% Similarity=0.169 Sum_probs=33.5
Q ss_pred CCcceEEEEecCCCCCCchhHHHH-HHHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665 265 KLTNCLAVTDVSASMGGFPMELSI-ALGLLVSELSE--EPCKGKLITFSENPEIH 316 (393)
Q Consensus 265 ~l~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~--~pfk~~~ITFS~~P~~~ 316 (393)
.--+.+.|.|+||||.. ++.+. ++.-++..+.. +--+=.+|+|+++++.+
T Consensus 21 ~~~div~vlD~SgSM~~--~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~~~~ 73 (223)
T 2b2x_A 21 TQLDIVIVLDGSNSIYP--WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE 73 (223)
T ss_dssp -CEEEEEEEECSTTCCC--HHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSEEEE
T ss_pred CcceEEEEEECCCChhh--HHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCccEE
Confidence 34577889999999994 55444 34445566653 33455679999998754
No 21
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=88.50 E-value=0.25 Score=49.25 Aligned_cols=50 Identities=20% Similarity=0.244 Sum_probs=36.1
Q ss_pred cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSE--EPCKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~--~pfk~~~ITFS~~P~~~ 316 (393)
-+.+.|.|+||||.+..++.+. ++.-++..+.. +--+=.+|+|+++++.+
T Consensus 10 ~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~~~~ 62 (509)
T 2odp_A 10 LNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEPKVL 62 (509)
T ss_dssp EEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSEEEE
T ss_pred eeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCCcee
Confidence 4678899999999987777665 45555666642 33445679999998864
No 22
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=88.25 E-value=0.57 Score=41.20 Aligned_cols=48 Identities=21% Similarity=0.244 Sum_probs=32.6
Q ss_pred cceEEEEecCCCCCCchhHHHHH-HHHHHhhcCc--CcCCCeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSIA-LGLLVSELSE--EPCKGKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vaia-LgLl~aEl~~--~pfk~~~ITFS~~P~~~ 316 (393)
-+.+.|.|+||||. +++.+.. +.-++..+.- +--+=.+|+|+++++.+
T Consensus 8 ~div~vlD~SgSm~--~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~~~~ 58 (213)
T 1pt6_A 8 LDIVIVLDGSNSIY--PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENVTHE 58 (213)
T ss_dssp EEEEEEEECCTTCC--CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSEEEE
T ss_pred ccEEEEEECCCChh--hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCccEE
Confidence 47788999999999 4555543 4445555552 33444579999998754
No 23
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=88.01 E-value=0.37 Score=47.71 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=35.5
Q ss_pred ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCc--CCCeeEEecCCCeeEe
Q 040665 268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEP--CKGKLITFSENPEIHL 317 (393)
Q Consensus 268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~p--fk~~~ITFS~~P~~~~ 317 (393)
+.+.|.|+||||.+..++.+. ++.-++.++...+ -+=.+|+|+++++.+.
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~~~~~ 55 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYPKIWV 55 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEEE
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCceEee
Confidence 567899999999987777765 3455566654433 2334699999987654
No 24
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=85.24 E-value=0.6 Score=48.64 Aligned_cols=50 Identities=26% Similarity=0.278 Sum_probs=36.2
Q ss_pred cceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCC--CeeEEecCCCeeE
Q 040665 267 TNCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCK--GKLITFSENPEIH 316 (393)
Q Consensus 267 ~n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk--~~~ITFS~~P~~~ 316 (393)
-|.+.|.|+||||.+..++.+. ++.-++..+...+-+ =.+|+|+++++.+
T Consensus 244 ~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~~~~ 296 (741)
T 3hrz_D 244 MNIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYPKIW 296 (741)
T ss_dssp EEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSEEEE
T ss_pred eeEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCCcee
Confidence 4678899999999987776665 455566666654433 3689999988765
No 25
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.76 E-value=5 Score=38.31 Aligned_cols=50 Identities=20% Similarity=0.231 Sum_probs=32.5
Q ss_pred CcceEEEEecCCCCCC---ch--hHHHH-HHHHHHhhcCc-Cc-CCCeeEEecCC-Cee
Q 040665 266 LTNCLAVTDVSASMGG---FP--MELSI-ALGLLVSELSE-EP-CKGKLITFSEN-PEI 315 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g---~P--m~vai-aLgLl~aEl~~-~p-fk~~~ITFS~~-P~~ 315 (393)
|+.+|.|+|+||||.. .| ++.+. ++-+++..+.+ .| =+=.+|||+.+ +++
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~~~v 61 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRV 61 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCEE
T ss_pred ceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCccee
Confidence 5678999999999964 35 55554 66677776543 33 23346889654 443
No 26
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=66.97 E-value=4.7 Score=45.34 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=35.7
Q ss_pred ceEEEEecCCCCCCchhHHHH-HHHHHHhhcCcCcCCCeeEEecCCCeeE
Q 040665 268 NCLAVTDVSASMGGFPMELSI-ALGLLVSELSEEPCKGKLITFSENPEIH 316 (393)
Q Consensus 268 n~iaV~DvSGSM~g~Pm~vai-aLgLl~aEl~~~pfk~~~ITFS~~P~~~ 316 (393)
+.+.|.|+||||.+..++.+. ++.-++..+..+--+=.+|+||++++.+
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~~~~~~rVglV~Fs~~~~~~ 181 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQFQRPSTQFSLMQFSNKFQTH 181 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSSCSSSEEEEEEEESSSEEEE
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhccccccEEEEEEECCeEEEE
Confidence 568899999999997666555 3444566666333455789999998775
No 27
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=52.62 E-value=8.5 Score=42.53 Aligned_cols=49 Identities=16% Similarity=0.169 Sum_probs=29.7
Q ss_pred CcceEEEEecCCCCCCchhH------H-HHHHHHHHhhcCc-CcCCCeeEEecCCCe
Q 040665 266 LTNCLAVTDVSASMGGFPME------L-SIALGLLVSELSE-EPCKGKLITFSENPE 314 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g~Pm~------v-aiaLgLl~aEl~~-~pfk~~~ITFS~~P~ 314 (393)
--+.+.|.|+||||.+..+. . --++--++..+.. +-=+=.+|+||+...
T Consensus 224 ~~DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld~L~~~~~drVgLV~Fs~~a~ 280 (893)
T 2ww8_A 224 PLDVVILLDNSNSMSNIRNKNARRAERAGEATRSLIDKITSDSENRVALVTYASTIF 280 (893)
T ss_dssp CEEEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHHHHHTSTTCEEEEEEESSSBC
T ss_pred CccEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCccc
Confidence 34788899999999987532 1 1233333444433 112335899999764
No 28
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=27.76 E-value=17 Score=32.30 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=31.2
Q ss_pred CcceEEEEecCCCCCC---ch--hHHHHHH-HHHHhhc-Cc-CcCCCeeEEecCC-CeeE
Q 040665 266 LTNCLAVTDVSASMGG---FP--MELSIAL-GLLVSEL-SE-EPCKGKLITFSEN-PEIH 316 (393)
Q Consensus 266 l~n~iaV~DvSGSM~g---~P--m~vaiaL-gLl~aEl-~~-~pfk~~~ITFS~~-P~~~ 316 (393)
++..+.+.|+|+||.. .| ++.+... ..++.+. .. +-=+=.+|+|..+ +.++
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~a~~~ 61 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVL 61 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTSCCEE
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCCcEEe
Confidence 4678899999999974 23 5666543 3333332 11 1134468999984 7665
No 29
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=22.78 E-value=85 Score=24.84 Aligned_cols=33 Identities=21% Similarity=0.285 Sum_probs=26.2
Q ss_pred cccCCCCCCcchh-hHHHHHHHHH---------HHHHHHHhhC
Q 040665 149 KCCPSIDSSYDKT-TLICEGIARR---------RVRDRLRKQV 181 (393)
Q Consensus 149 KW~PS~~~s~d~~-t~l~~~iA~~---------~~~~~LRk~i 181 (393)
-|+||+-+..... ..+|-++||. -+|++||-.+
T Consensus 4 ~WLptL~T~TPeeG~~LAvklaR~~vk~tQPd~evr~~lR~~Y 46 (76)
T 2oyy_A 4 TWLPTLVTATPQEGFDLAVKLSRIAVKKTQPDAQVRDTLRAVY 46 (76)
T ss_dssp CCCCCSCCSSHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred hhhhhhhcCChHHHHHHHHHHHHHHHhccCCCHHHHHHHhHHh
Confidence 6999998877643 4678888888 8899999765
No 30
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=21.87 E-value=69 Score=32.95 Aligned_cols=50 Identities=20% Similarity=0.336 Sum_probs=30.1
Q ss_pred CCCcceEEEEecCCCCCC------chhHHHH-HHHHHHhh--cCcCcCCCeeEEecCCC
Q 040665 264 GKLTNCLAVTDVSASMGG------FPMELSI-ALGLLVSE--LSEEPCKGKLITFSENP 313 (393)
Q Consensus 264 g~l~n~iaV~DvSGSM~g------~Pm~vai-aLgLl~aE--l~~~pfk~~~ITFS~~P 313 (393)
|.-+..+.+.||||||.. ++++.|. ++..++.. .+.+-=.=.+|+|..+.
T Consensus 5 ~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~ 63 (565)
T 1jey_B 5 GNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDG 63 (565)
T ss_dssp -CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSS
T ss_pred CCceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCC
Confidence 444667788899999963 4677666 44445543 23332334578887654
Done!