BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040667
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+L + Y +G Y+ + ++ A+ L + W+ LG A K D ++A++ + +A++LD
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQ 112
P+N EAW N+ + + EA +++AL +L N + ++GN Q
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPNNAEAKQNLGNAKQ 122
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALY 93
W+ LG A K D ++A++ + +A++LDP+N EAW N+ + + EA +++AL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 94 W-----QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126
+ W N + G+ +A+E Q L + N
Sbjct: 72 LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 9/129 (6%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+L + Y +G Y+ + ++ A+ L + W+ LG A K D ++A++ + +A++LD
Sbjct: 6 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQL-------WENYSHVALDVGNIGQAL 114
P + EAW N+ + + EA +++AL +L W N + G+ +A+
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELDPRSAEAWYNLGNAYYKQGDYDEAI 123
Query: 115 EAVQMVLNM 123
E Q L +
Sbjct: 124 EYYQKALEL 132
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 50/99 (50%), Gaps = 9/99 (9%)
Query: 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
+ W+ LG A K D ++A++ + +A++LDP + EAW N+ + + EA +++A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 92 LYWQL-------WENYSHVALDVGNIGQALEAVQMVLNM 123
L +L W N + G+ +A+E Q L +
Sbjct: 62 L--ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+L + Y +G Y+ + ++ A+ L + W+ LG A K D ++A++ + +A++LD
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133
Query: 62 P 62
P
Sbjct: 134 P 134
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 60/111 (54%), Gaps = 2/111 (1%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+L + Y +G Y+ + ++ A+ L + W+ LG A K D ++A++ + +A++L
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELY 73
Query: 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQ 112
P+N EAW N+ + + EA +++AL +L+ N + ++GN Q
Sbjct: 74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL--ELYPNNAEAKQNLGNAKQ 122
Score = 46.6 bits (109), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 53/102 (51%), Gaps = 9/102 (8%)
Query: 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
+ W+ LG A K D ++A++ + +A++L P+N EAW N+ + + EA +++A
Sbjct: 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 69
Query: 92 LYWQLWENYSHVALDVGN-------IGQALEAVQMVLNMTNN 126
L +L+ N + ++GN +A+E Q L + N
Sbjct: 70 L--ELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 109
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 1 RSLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL 60
++L + Y +G Y+ + ++ A+ L W+ LG A K D +KA++ + +A++L
Sbjct: 13 KNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALEL 72
Query: 61 DPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQ 112
DP+N +AW + + ++A +++AL +L N + ++GN Q
Sbjct: 73 DPNNAKAWYRRGNAYYKQGDYQKAIEDYQKAL--ELDPNNAKAKQNLGNAKQ 122
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 49/100 (49%), Gaps = 5/100 (5%)
Query: 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
+ W LG A K D +KA++ + +A++LDP+N AW N+ + + ++A +++A
Sbjct: 10 EAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKA 69
Query: 92 LYW-----QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126
L + W + G+ +A+E Q L + N
Sbjct: 70 LELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPN 109
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 45/79 (56%), Gaps = 2/79 (2%)
Query: 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALY 93
W+ LG A K D ++A++ + +A++LDP+N EAW N+ + + EA +++AL
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL- 70
Query: 94 WQLWENYSHVALDVGNIGQ 112
+L N + ++GN Q
Sbjct: 71 -ELDPNNAEAKQNLGNAKQ 88
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+L + Y +G Y+ + ++ A+ L + W+ LG A K D ++A++ + +A++LD
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73
Query: 62 PDNGEAWNNIA 72
P+N EA N+
Sbjct: 74 PNNAEAKQNLG 84
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 50/91 (54%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+LA +G + + + ++ A+ +S + D + +G + +DV+ AL +TRA+Q++
Sbjct: 48 NLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQIN 107
Query: 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92
P +A +N+A +H EA +++ AL
Sbjct: 108 PAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 46 DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVAL 105
++E+A+ + +A+++ P+ A +N+A + + K +EA + +KEA+ ++ ++
Sbjct: 24 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI--RISPTFADAYS 81
Query: 106 DVGNIGQALEAVQMVL 121
++GN + ++ VQ L
Sbjct: 82 NMGNTLKEMQDVQGAL 97
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr
Superhelix
Length = 70
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
+ W+ LG A K D ++A++ + +A++LDP + EAW N+ + + EA +++A
Sbjct: 4 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 63
Query: 92 L 92
L
Sbjct: 64 L 64
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+L + Y +G Y+ + ++ A+ L + W+ LG A K D ++A++ + +A++LD
Sbjct: 8 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 67
Query: 62 P 62
P
Sbjct: 68 P 68
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 17 KILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74
K L+ AA+ L +S+ PD LG + + +KA+D FT A+ + P++ WN +
Sbjct: 161 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 220
Query: 75 HMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG----NIGQALEAVQMVLNMTNNKR 128
+S+EA A++ AL +L Y ++G N+G EAV+ L N +R
Sbjct: 221 LANGNQSEEAVAAYRRAL--ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 276
Score = 26.6 bits (57), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYW 94
F G L+ D+ A+ F AVQ DP + EAW + ++ A A + L
Sbjct: 28 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 87
Query: 95 QLWENYSHVALDVGNIGQALE 115
+ + +AL V ++L+
Sbjct: 88 KPDNQTALMALAVSFTNESLQ 108
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 17 KILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74
K L+ AA+ L +S+ PD LG + + +KA+D FT A+ + P++ WN +
Sbjct: 138 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 197
Query: 75 HMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG----NIGQALEAVQMVLNMTNNKR 128
+S+EA A++ AL +L Y ++G N+G EAV+ L N +R
Sbjct: 198 LANGNQSEEAVAAYRRAL--ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 253
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYW 94
F G L+ D+ A+ F AVQ DP + EAW + ++ A A + L
Sbjct: 5 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 64
Query: 95 QLWENYSHVALDVGNIGQALE 115
+ + +AL V ++L+
Sbjct: 65 KPDNQTALMALAVSFTNESLQ 85
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 17 KILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74
K L+ AA+ L +S+ PD LG + + +KA+D FT A+ + P++ WN +
Sbjct: 152 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 211
Query: 75 HMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG----NIGQALEAVQMVLNMTNNKR 128
+S+EA A++ AL +L Y ++G N+G EAV+ L N +R
Sbjct: 212 LANGNQSEEAVAAYRRAL--ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 267
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 35/81 (43%)
Query: 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYW 94
F G L+ D+ A+ F AVQ DP + EAW + ++ A A + L
Sbjct: 19 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 78
Query: 95 QLWENYSHVALDVGNIGQALE 115
+ + +AL V ++L+
Sbjct: 79 KPDNQTALMALAVSFTNESLQ 99
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 17 KILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74
K L+ AA+ L +S+ PD LG + + +KA+D FT A+ + P++ WN +
Sbjct: 161 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 220
Query: 75 HMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG----NIGQALEAVQMVLNMTNNKR 128
+S+EA A++ AL +L Y ++G N+G EAV+ L N +R
Sbjct: 221 LANGNQSEEAVAAYRRAL--ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 276
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 8/118 (6%)
Query: 17 KILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACL 74
K L+ AA+ L +S+ PD LG + + +KA+D FT A+ + P++ WN +
Sbjct: 201 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGAT 260
Query: 75 HMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG----NIGQALEAVQMVLNMTNNKR 128
+S+EA A++ AL +L Y ++G N+G EAV+ L N +R
Sbjct: 261 LANGNQSEEAVAAYRRAL--ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1)
From C.Elegans
Length = 127
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83
LG AA K +D EKA + +A++LDP N +NN A ++ +KK E
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAE 60
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 20 WEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLH 75
+E A+ L + D + LG +AR ++A+ + RA+ L P++ N+AC++
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Score = 34.3 bits (77), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 46/91 (50%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+LA Y +G + + + A+ L +PD + L A + V +A D + A++L
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC 301
Query: 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92
P + ++ NN+A + + +EA +++AL
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKAL 332
Score = 33.9 bits (76), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD 63
RG + + + A+ L + DG+ L AA + A D+E A+ + A+Q +PD
Sbjct: 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD 133
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/91 (21%), Positives = 47/91 (51%)
Query: 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD 61
+LA + +G ++ + A+ L + D L + ++E+A+ + +A+++
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335
Query: 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92
P+ A +N+A + + K +EA + +KEA+
Sbjct: 336 PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 35.4 bits (80), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 19 LWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78
++ A+ L+ YP ++ G +D + A + F +A L+P+N + +ACL +
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 357
Query: 79 KKSKEAFIAFKE-----ALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTEL 133
K E+ F E ++ ++ + D G+ A++ + KR++ E+
Sbjct: 358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA------KRLE-EV 410
Query: 134 LERI---VLDLEGRTSIIESESC 153
E+I + L G+ +I+ +S
Sbjct: 411 QEKIHVGIGPLIGKATILARQSS 433
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/143 (21%), Positives = 65/143 (45%), Gaps = 15/143 (10%)
Query: 19 LWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78
++ A+ L+ YP ++ G +D + A + F +A L+P+N + +ACL +
Sbjct: 294 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ 353
Query: 79 KKSKEAFIAFKE-----ALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTEL 133
K E+ F E ++ ++ + D G+ A++ + KR++ E+
Sbjct: 354 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA------KRLE-EV 406
Query: 134 LERI---VLDLEGRTSIIESESC 153
E+I + L G+ +I+ +S
Sbjct: 407 QEKIHVGIGPLIGKATILARQSS 429
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 57/142 (40%), Gaps = 15/142 (10%)
Query: 1 RSLARSAY--------NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALD 52
R AR AY RG E +K+ A+ + D AL + + A +
Sbjct: 46 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADE 105
Query: 53 GFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA----LYWQ---LWENYSHVAL 105
+ +A+ D N NN +K+ +EA+ EA LY + ++EN V+L
Sbjct: 106 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 165
Query: 106 DVGNIGQALEAVQMVLNMTNNK 127
+ QA E + L + N+
Sbjct: 166 QMKKPAQAKEYFEKSLRLNRNQ 187
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 32.0 bits (71), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 56/142 (39%), Gaps = 15/142 (10%)
Query: 1 RSLARSAY--------NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALD 52
R AR AY RG E +K+ A+ + D AL + + A +
Sbjct: 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXEPKLADE 92
Query: 53 GFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA----LYWQ---LWENYSHVAL 105
+ +A+ D N NN +K+ +EA+ EA LY + ++EN V+L
Sbjct: 93 EYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152
Query: 106 DVGNIGQALEAVQMVLNMTNNK 127
QA E + L + N+
Sbjct: 153 QXKKPAQAKEYFEKSLRLNRNQ 174
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 31.6 bits (70), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIA 72
Y + L AA+ ++ +LG + + + A RAV+L PD+ + WN +
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 73 CLHMIKKKSKEAFIAFKEAL 92
+ +EA A+ AL
Sbjct: 214 ATLANGNRPQEALDAYNRAL 233
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 29 LYPDG---WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85
L PD W LGA ++ALD + RA+ ++P N+A + + A
Sbjct: 201 LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260
Query: 86 IAFKEALYWQL 96
A+Y Q+
Sbjct: 261 KQLVRAIYMQV 271
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 35/80 (43%)
Query: 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIA 72
Y + L AA+ ++ +LG + + + A RAV+L PD+ + WN +
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213
Query: 73 CLHMIKKKSKEAFIAFKEAL 92
+ +EA A+ AL
Sbjct: 214 ATLANGNRPQEALDAYNRAL 233
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
Query: 29 LYPDG---WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85
L PD W LGA ++ALD + RA+ ++P N+A + + A
Sbjct: 201 LRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAA 260
Query: 86 IAFKEALYWQL 96
A+Y Q+
Sbjct: 261 KQLVRAIYMQV 271
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 31.2 bits (69), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 4/132 (3%)
Query: 1 RSLARSAYNRGGYETSKILW-EAAMALSSLY-PDGWFALGAAALKARDVEKALDGFTRAV 58
R +++S + E K L+ EAA + PD LG + + +A+D F A+
Sbjct: 181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL 240
Query: 59 QLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVG--NIGQALEA 116
+ P++ WN + +S+EA A+ AL Q S L + N+G EA
Sbjct: 241 TVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300
Query: 117 VQMVLNMTNNKR 128
V L + +R
Sbjct: 301 VSNFLTALSLQR 312
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 30.8 bits (68), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAW 68
P+ ++ G A + +++D F +A+QLDP+ + W
Sbjct: 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYW 43
Score = 28.5 bits (62), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--DPDNG 65
Y+ G Y S L+E A+ L W G A E+A+D + + + D N
Sbjct: 17 YDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK 76
Query: 66 EAWNNIA-CLHMIKKKSKEAFIA 87
+ W A L I+ K EA IA
Sbjct: 77 DVWAAKADALRYIEGKEVEAEIA 99
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 30.4 bits (67), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
W A+G L + +A F+++ +DP G AW A I+ + +A A+ A
Sbjct: 376 WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433
>pdb|1ELR|A Chain A, Crystal Structure Of The Tpr2a Domain Of Hop In Complex
With The Hsp90 Peptide Meevd
Length = 131
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78
LG A K +D + AL + +A +LDP N N A ++ K
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK 51
>pdb|3ESK|A Chain A, Structure Of Hop Tpr2a Domain In Complex With The
Non-Cognate Hsc70 Peptide Ligand
Length = 129
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78
LG A K +D + AL + +A +LDP N N A ++ K
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEK 51
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQL 96
LG L A + AL F AV DPDN A+ A + + KSK A + + QL
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVI--QL 89
Query: 97 WENYS-------HVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIV 138
+++ H+ L G + +A + + VL ++ + E +++
Sbjct: 90 KXDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLI 138
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 23 AMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82
A+AL+++Y D ++ LG + +KA++ + + + + P A+ +I + K
Sbjct: 99 AIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158
Query: 83 EAFIAF 88
EA F
Sbjct: 159 EAVKYF 164
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 10 RGGYETSKILWEAAM-----ALSSLYPDGWFALGAAAL------KARDVE----KALDGF 54
RG Y+ ++ L + A+ L +PD L AL KA +VE +AL+ +
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 55 -TRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92
TR DP+ + NN+A ++ + K ++A +KE L
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 48/99 (48%), Gaps = 16/99 (16%)
Query: 10 RGGYETSKILWEAAM-----ALSSLYPDGWFALGAAAL------KARDVE----KALDGF 54
RG Y+ ++ L + A+ L +PD L AL KA +VE +AL+ +
Sbjct: 98 RGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157
Query: 55 -TRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92
TR DP+ + NN+A ++ + K ++A +KE L
Sbjct: 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 5/111 (4%)
Query: 20 WEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79
++ A+ L S ++ G ++ ++A F +A +LDP+N + +ACL +
Sbjct: 293 FDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352
Query: 80 KSKEAFIAFKEALY-----WQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125
K + F EA ++ ++ + D + +AL+ + + + N
Sbjct: 353 KFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 46/108 (42%), Gaps = 7/108 (6%)
Query: 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF------IAFKE 90
LG L A + AL F AV DPDN A+ A + + KSK A IA K
Sbjct: 9 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKX 68
Query: 91 ALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIV 138
+ H+ L G + +A + + VL +++ + E ++V
Sbjct: 69 DFTAARLQR-GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPD 63
+ ++ +G A K D +KAL+ + A++L+PD
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 9/92 (9%)
Query: 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQL 96
LG L A + AL F AV DPDN A+ A + + KSK A + + QL
Sbjct: 32 LGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI--QL 89
Query: 97 WENYS-------HVALDVGNIGQALEAVQMVL 121
+++ H+ L G + +A + + VL
Sbjct: 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 27.7 bits (60), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 42 LKARDVEKALDGFTRAVQLDPDNGEAWNN 70
KA+D E A+ +++A++L+P N + N
Sbjct: 17 FKAKDYENAIKFYSQAIELNPSNAIYYGN 45
>pdb|2BUG|A Chain A, Solution Structure Of The Tpr Domain From Protein
Phosphatase 5 In Complex With Hsp90 Derived Peptide
Length = 140
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 42 LKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM 76
KA+D E A+ +++A++L+P N + N + ++
Sbjct: 32 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL 66
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
F LG A ++A+D F A+ L P+ G+ IA + + +EA FK+A
Sbjct: 114 FRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5
Length = 166
Score = 27.3 bits (59), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 42 LKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM 76
KA+D E A+ +++A++L+P N + N + ++
Sbjct: 24 FKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL 58
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 27.3 bits (59), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 46 DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92
++E+AL + +A++LD A+ ++++K+ KEA F++AL
Sbjct: 72 ELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
F LG A ++A+D F A+ L P+ G+ IA + + +EA FK+A
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91
F LG A ++A+D F A+ L P+ G+ IA + + +EA FK+A
Sbjct: 114 FRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 27/48 (56%)
Query: 38 GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85
G AL +++ AL ++ A++LDP N ++N + + K ++A+
Sbjct: 11 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAY 58
>pdb|4GNS|B Chain B, Crystal Structure Of The Chs5-Chs6 Exomer Cargo Adaptor
Complex
Length = 754
Score = 26.6 bits (57), Expect = 9.7, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 46 DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87
D E AL + +L D+ E+W N+A H+ K++ ++A A
Sbjct: 352 DYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA 393
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 21 EAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEA 67
+ + L S + G+ A + R+ KA + A+Q+DP N EA
Sbjct: 71 DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,118,345
Number of Sequences: 62578
Number of extensions: 173318
Number of successful extensions: 693
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 590
Number of HSP's gapped (non-prelim): 94
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)