Query 040667
Match_columns 207
No_of_seqs 275 out of 2576
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 10:38:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG3063 PilF Tfp pilus assembl 99.9 1.6E-20 3.5E-25 130.8 15.4 129 2-130 40-175 (250)
2 KOG4626 O-linked N-acetylgluco 99.8 2.3E-20 5E-25 146.2 11.7 145 2-146 291-443 (966)
3 KOG4626 O-linked N-acetylgluco 99.8 6.3E-20 1.4E-24 143.8 10.2 144 2-145 257-408 (966)
4 TIGR00990 3a0801s09 mitochondr 99.8 2.7E-17 5.8E-22 135.8 16.8 144 2-145 336-487 (615)
5 PRK15359 type III secretion sy 99.8 3.9E-17 8.4E-22 110.3 14.5 118 16-136 12-134 (144)
6 PRK11189 lipoprotein NlpI; Pro 99.8 1.5E-16 3.3E-21 120.0 18.5 91 2-92 69-159 (296)
7 KOG1126 DNA-binding cell divis 99.8 5.8E-18 1.3E-22 133.3 10.3 142 3-144 427-576 (638)
8 PRK10370 formate-dependent nit 99.8 1.8E-16 4E-21 112.4 16.8 125 10-134 52-184 (198)
9 KOG1126 DNA-binding cell divis 99.8 6E-18 1.3E-22 133.2 9.9 144 2-145 358-543 (638)
10 TIGR00990 3a0801s09 mitochondr 99.7 1.7E-16 3.6E-21 131.1 18.3 125 2-126 370-499 (615)
11 TIGR02521 type_IV_pilW type IV 99.7 2E-16 4.2E-21 114.7 16.4 126 2-127 36-168 (234)
12 KOG1155 Anaphase-promoting com 99.7 9.8E-17 2.1E-21 122.0 14.5 122 3-124 336-462 (559)
13 KOG1155 Anaphase-promoting com 99.7 1.6E-16 3.4E-21 120.9 15.5 122 3-124 370-496 (559)
14 PRK15359 type III secretion sy 99.7 2E-16 4.3E-21 106.8 13.4 106 2-107 29-139 (144)
15 TIGR02552 LcrH_SycD type III s 99.7 9.1E-16 2E-20 102.7 15.2 120 18-137 4-128 (135)
16 PRK09782 bacteriophage N4 rece 99.7 3.6E-15 7.8E-20 127.1 18.4 119 7-126 586-709 (987)
17 PRK12370 invasion protein regu 99.7 7E-15 1.5E-19 119.9 17.6 115 10-124 317-436 (553)
18 PRK15174 Vi polysaccharide exp 99.7 1E-14 2.2E-19 120.9 17.9 124 3-126 252-384 (656)
19 PRK15179 Vi polysaccharide bio 99.7 1.1E-14 2.4E-19 120.0 17.8 126 1-126 90-220 (694)
20 PRK12370 invasion protein regu 99.7 4.1E-15 8.9E-20 121.2 14.8 125 2-126 343-473 (553)
21 TIGR02521 type_IV_pilW type IV 99.7 3.7E-14 8E-19 102.7 18.4 125 2-126 70-201 (234)
22 KOG0553 TPR repeat-containing 99.7 2.3E-15 4.9E-20 109.2 11.5 89 4-92 88-176 (304)
23 PRK15363 pathogenicity island 99.6 4.8E-15 1E-19 99.0 11.8 90 3-92 41-130 (157)
24 PRK15174 Vi polysaccharide exp 99.6 9.6E-15 2.1E-19 121.1 16.2 125 3-127 218-351 (656)
25 KOG0547 Translocase of outer m 99.6 3.9E-14 8.4E-19 108.8 16.5 124 3-126 366-494 (606)
26 TIGR03302 OM_YfiO outer membra 99.6 6.8E-14 1.5E-18 102.4 17.1 129 2-130 38-202 (235)
27 KOG1125 TPR repeat-containing 99.6 2.3E-14 5E-19 111.8 13.8 144 3-146 291-519 (579)
28 PRK09782 bacteriophage N4 rece 99.6 4.3E-14 9.2E-19 120.7 16.2 142 3-145 548-697 (987)
29 PRK11189 lipoprotein NlpI; Pro 99.6 6.7E-14 1.4E-18 105.7 15.3 119 10-128 39-166 (296)
30 KOG0553 TPR repeat-containing 99.6 2.6E-14 5.6E-19 103.8 12.0 110 34-143 84-198 (304)
31 PRK11447 cellulose synthase su 99.6 7.9E-14 1.7E-18 122.4 17.3 126 3-128 275-419 (1157)
32 KOG1173 Anaphase-promoting com 99.6 6.4E-14 1.4E-18 109.1 14.3 138 3-140 386-535 (611)
33 KOG1173 Anaphase-promoting com 99.6 4.2E-14 9E-19 110.2 12.2 145 2-146 317-510 (611)
34 TIGR03302 OM_YfiO outer membra 99.6 2.6E-13 5.6E-18 99.3 15.6 124 2-125 75-234 (235)
35 PF13429 TPR_15: Tetratricopep 99.6 1.9E-14 4E-19 108.0 9.2 126 3-128 116-248 (280)
36 PRK15363 pathogenicity island 99.6 3.3E-13 7.1E-18 90.3 14.0 119 25-144 28-152 (157)
37 TIGR02917 PEP_TPR_lipo putativ 99.6 1.7E-13 3.7E-18 117.1 16.1 123 3-126 742-869 (899)
38 PRK11788 tetratricopeptide rep 99.6 2.7E-13 5.9E-18 106.2 15.9 125 2-126 146-281 (389)
39 PRK11788 tetratricopeptide rep 99.6 1.8E-13 3.9E-18 107.3 14.8 125 2-126 112-246 (389)
40 PLN03088 SGT1, suppressor of 99.6 2.3E-13 5.1E-18 105.0 14.7 106 2-107 7-117 (356)
41 KOG1128 Uncharacterized conser 99.6 1.2E-13 2.7E-18 110.4 13.2 126 2-127 490-620 (777)
42 PRK11447 cellulose synthase su 99.5 5.5E-13 1.2E-17 117.2 18.4 125 3-127 357-528 (1157)
43 COG5010 TadD Flp pilus assembl 99.5 3.4E-13 7.4E-18 96.2 13.7 143 3-145 72-222 (257)
44 PF13429 TPR_15: Tetratricopep 99.5 2.3E-13 5E-18 102.1 13.6 121 3-123 152-277 (280)
45 PLN02789 farnesyltranstransfer 99.5 6.6E-13 1.4E-17 100.6 16.0 128 6-133 46-181 (320)
46 KOG1125 TPR repeat-containing 99.5 5.2E-14 1.1E-18 109.9 10.2 111 16-126 413-530 (579)
47 KOG2076 RNA polymerase III tra 99.5 1.4E-12 3.1E-17 106.4 18.0 124 3-126 145-273 (895)
48 TIGR02917 PEP_TPR_lipo putativ 99.5 6.1E-13 1.3E-17 113.7 16.7 124 3-126 131-259 (899)
49 TIGR02552 LcrH_SycD type III s 99.5 3.2E-13 6.8E-18 90.4 11.8 91 2-92 22-112 (135)
50 KOG1129 TPR repeat-containing 99.5 2.1E-14 4.6E-19 105.5 6.4 144 3-146 296-450 (478)
51 COG3063 PilF Tfp pilus assembl 99.5 2E-12 4.3E-17 90.8 14.7 124 3-126 75-205 (250)
52 KOG0547 Translocase of outer m 99.5 1.3E-12 2.8E-17 100.6 13.8 147 4-150 333-494 (606)
53 KOG0548 Molecular co-chaperone 99.5 1.7E-12 3.6E-17 100.8 14.5 138 3-140 304-472 (539)
54 PRK10370 formate-dependent nit 99.5 8.4E-13 1.8E-17 93.8 11.9 91 2-92 78-171 (198)
55 KOG2002 TPR-containing nuclear 99.5 2.6E-13 5.7E-18 111.4 10.4 121 9-129 624-751 (1018)
56 COG4235 Cytochrome c biogenesi 99.5 1.2E-11 2.7E-16 90.4 17.9 133 12-144 137-277 (287)
57 COG5010 TadD Flp pilus assembl 99.5 5.5E-12 1.2E-16 90.1 15.0 117 3-119 106-227 (257)
58 PF12895 Apc3: Anaphase-promot 99.5 3.4E-13 7.4E-18 82.6 7.2 82 9-91 1-84 (84)
59 PLN02789 farnesyltranstransfer 99.5 1.2E-11 2.5E-16 93.9 17.0 138 3-140 77-229 (320)
60 CHL00033 ycf3 photosystem I as 99.5 2.4E-12 5.1E-17 89.4 12.3 132 5-136 7-162 (168)
61 PF09976 TPR_21: Tetratricopep 99.4 1.5E-11 3.3E-16 83.2 15.4 115 7-121 21-145 (145)
62 KOG3060 Uncharacterized conser 99.4 1.3E-11 2.8E-16 87.9 15.1 138 4-141 93-238 (289)
63 KOG2002 TPR-containing nuclear 99.4 1.8E-12 4E-17 106.6 12.4 62 4-65 171-233 (1018)
64 COG4783 Putative Zn-dependent 99.4 1.5E-11 3.2E-16 94.8 16.5 124 3-126 312-440 (484)
65 PLN03088 SGT1, suppressor of 99.4 6E-12 1.3E-16 97.3 14.6 108 34-141 5-117 (356)
66 PRK02603 photosystem I assembl 99.4 4.4E-12 9.5E-17 88.4 12.6 111 3-128 41-154 (172)
67 KOG0548 Molecular co-chaperone 99.4 3.2E-12 6.9E-17 99.3 12.6 118 2-119 363-485 (539)
68 PRK10049 pgaA outer membrane p 99.4 1.7E-11 3.7E-16 103.7 18.2 122 5-127 23-149 (765)
69 KOG1840 Kinesin light chain [C 99.4 1.9E-12 4.1E-17 102.7 11.5 144 2-145 204-387 (508)
70 PRK10049 pgaA outer membrane p 99.4 6E-12 1.3E-16 106.4 15.1 122 2-125 54-180 (765)
71 cd00189 TPR Tetratricopeptide 99.4 9.6E-12 2.1E-16 77.0 11.0 90 2-91 5-94 (100)
72 TIGR02795 tol_pal_ybgF tol-pal 99.4 1.9E-11 4.1E-16 79.7 12.6 94 33-126 4-108 (119)
73 KOG0624 dsRNA-activated protei 99.4 1.1E-11 2.4E-16 92.0 12.4 90 3-92 44-133 (504)
74 PF13432 TPR_16: Tetratricopep 99.4 1.5E-12 3.3E-17 75.7 6.2 64 2-65 2-65 (65)
75 KOG1840 Kinesin light chain [C 99.4 6.5E-12 1.4E-16 99.7 11.6 145 2-146 288-471 (508)
76 cd00189 TPR Tetratricopeptide 99.4 2.1E-11 4.5E-16 75.5 11.8 94 33-126 2-100 (100)
77 TIGR02795 tol_pal_ybgF tol-pal 99.4 2.2E-11 4.7E-16 79.4 11.9 91 2-92 7-103 (119)
78 CHL00033 ycf3 photosystem I as 99.4 2.5E-11 5.5E-16 84.2 12.9 91 2-92 40-140 (168)
79 PRK15179 Vi polysaccharide bio 99.4 2.9E-11 6.2E-16 100.1 14.8 111 16-126 71-186 (694)
80 cd05804 StaR_like StaR_like; a 99.4 8.5E-11 1.9E-15 91.1 16.4 122 4-125 50-217 (355)
81 PF13414 TPR_11: TPR repeat; P 99.4 3E-12 6.4E-17 75.4 6.3 63 30-92 2-65 (69)
82 KOG2003 TPR repeat-containing 99.3 6.5E-12 1.4E-16 96.4 9.4 122 5-126 498-624 (840)
83 PF13525 YfiO: Outer membrane 99.3 2.4E-10 5.1E-15 81.7 16.7 142 3-144 11-191 (203)
84 KOG4162 Predicted calmodulin-b 99.3 6E-11 1.3E-15 95.8 14.6 125 3-127 656-787 (799)
85 PF13414 TPR_11: TPR repeat; P 99.3 7.4E-12 1.6E-16 73.7 7.3 61 2-62 8-69 (69)
86 PRK10866 outer membrane biogen 99.3 4.9E-10 1.1E-14 82.1 18.2 142 3-144 38-225 (243)
87 KOG1129 TPR repeat-containing 99.3 1.4E-11 3.1E-16 90.8 9.9 120 2-122 228-352 (478)
88 PRK10153 DNA-binding transcrip 99.3 1.7E-10 3.6E-15 92.9 16.6 116 12-127 357-486 (517)
89 PRK15331 chaperone protein Sic 99.3 8.4E-11 1.8E-15 79.2 12.1 102 21-122 27-133 (165)
90 KOG2003 TPR repeat-containing 99.3 4.9E-11 1.1E-15 91.7 11.9 139 3-144 460-605 (840)
91 KOG1174 Anaphase-promoting com 99.3 1.9E-10 4.1E-15 87.4 14.7 88 4-91 307-394 (564)
92 COG4783 Putative Zn-dependent 99.3 4.7E-10 1E-14 86.7 16.2 129 3-143 346-474 (484)
93 KOG3060 Uncharacterized conser 99.3 8.9E-10 1.9E-14 78.7 16.3 124 5-128 60-188 (289)
94 KOG0550 Molecular chaperone (D 99.3 9.1E-11 2E-15 88.9 11.9 123 4-126 210-353 (486)
95 PRK14574 hmsH outer membrane p 99.3 3E-10 6.6E-15 95.8 16.3 123 4-126 41-168 (822)
96 PRK15331 chaperone protein Sic 99.3 1.7E-10 3.6E-15 77.8 11.7 90 3-92 43-132 (165)
97 KOG0543 FKBP-type peptidyl-pro 99.3 2.2E-10 4.8E-15 86.8 13.4 124 2-125 213-357 (397)
98 PF12895 Apc3: Anaphase-promot 99.3 4.5E-11 9.9E-16 73.1 8.0 77 44-120 2-84 (84)
99 PRK14574 hmsH outer membrane p 99.3 5.1E-10 1.1E-14 94.4 16.5 128 3-130 74-205 (822)
100 PF14559 TPR_19: Tetratricopep 99.3 4.3E-11 9.2E-16 70.2 7.3 67 7-73 1-67 (68)
101 COG2956 Predicted N-acetylgluc 99.2 6.3E-10 1.4E-14 82.0 14.4 124 3-126 113-246 (389)
102 PF09295 ChAPs: ChAPs (Chs5p-A 99.2 1.3E-09 2.8E-14 84.5 16.5 116 5-123 177-297 (395)
103 PRK10747 putative protoheme IX 99.2 8E-10 1.7E-14 87.0 15.5 123 4-126 160-360 (398)
104 PF13371 TPR_9: Tetratricopept 99.2 1.5E-10 3.2E-15 68.9 8.6 70 3-72 1-70 (73)
105 KOG0550 Molecular chaperone (D 99.2 1.4E-10 3.1E-15 87.8 10.0 123 4-126 176-319 (486)
106 COG2956 Predicted N-acetylgluc 99.2 1.5E-09 3.2E-14 80.1 14.9 125 2-126 146-281 (389)
107 TIGR00540 hemY_coli hemY prote 99.2 8.6E-10 1.9E-14 87.2 15.0 121 3-123 269-399 (409)
108 PRK10803 tol-pal system protei 99.2 9.6E-10 2.1E-14 81.2 14.2 96 32-127 143-250 (263)
109 TIGR00540 hemY_coli hemY prote 99.2 4E-09 8.8E-14 83.4 16.9 125 4-128 125-297 (409)
110 PRK10803 tol-pal system protei 99.2 8.7E-10 1.9E-14 81.4 12.3 85 8-92 154-244 (263)
111 PRK11906 transcriptional regul 99.2 2.2E-09 4.7E-14 83.4 14.3 115 12-126 273-404 (458)
112 PF12688 TPR_5: Tetratrico pep 99.2 3.6E-09 7.8E-14 68.6 13.2 91 2-92 6-102 (120)
113 PF09976 TPR_21: Tetratricopep 99.1 1E-09 2.2E-14 74.3 11.0 89 3-92 54-145 (145)
114 PRK10747 putative protoheme IX 99.1 3.9E-09 8.4E-14 83.1 15.2 119 3-124 269-391 (398)
115 KOG1156 N-terminal acetyltrans 99.1 1.2E-09 2.7E-14 86.9 12.0 142 5-146 15-164 (700)
116 PF13432 TPR_16: Tetratricopep 99.1 4.8E-10 1E-14 65.0 7.5 58 35-92 1-58 (65)
117 KOG1156 N-terminal acetyltrans 99.1 4.7E-09 1E-13 83.7 14.3 137 3-139 81-264 (700)
118 PRK14720 transcript cleavage f 99.1 6.7E-09 1.5E-13 87.5 16.0 100 27-127 112-256 (906)
119 KOG0624 dsRNA-activated protei 99.1 2.9E-09 6.3E-14 79.4 12.2 90 3-92 161-250 (504)
120 KOG0543 FKBP-type peptidyl-pro 99.1 1.8E-09 3.9E-14 82.0 11.4 109 35-143 212-340 (397)
121 PRK02603 photosystem I assembl 99.1 2.6E-09 5.6E-14 74.4 11.4 92 29-120 33-132 (172)
122 PRK14720 transcript cleavage f 99.1 3.7E-09 8.1E-14 89.0 13.7 120 3-125 37-180 (906)
123 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 1.1E-09 2.5E-14 84.8 9.1 67 26-92 70-139 (453)
124 KOG1127 TPR repeat-containing 99.1 1.1E-09 2.3E-14 91.0 9.2 136 11-146 472-651 (1238)
125 PF12569 NARP1: NMDA receptor- 99.1 1.4E-08 2.9E-13 81.7 15.2 124 3-126 200-337 (517)
126 KOG4234 TPR repeat-containing 99.0 8.1E-09 1.8E-13 71.5 11.9 89 4-92 102-195 (271)
127 KOG0495 HAT repeat protein [RN 99.0 1.7E-08 3.7E-13 81.0 14.3 121 6-126 660-785 (913)
128 KOG1128 Uncharacterized conser 99.0 5.9E-09 1.3E-13 84.2 11.7 141 4-145 431-607 (777)
129 KOG2076 RNA polymerase III tra 99.0 4.7E-08 1E-12 80.7 17.0 123 2-124 178-310 (895)
130 COG4235 Cytochrome c biogenesi 99.0 9.5E-09 2.1E-13 75.5 11.7 90 3-92 162-254 (287)
131 PF12688 TPR_5: Tetratrico pep 99.0 2.7E-08 5.8E-13 64.6 12.5 91 32-122 2-103 (120)
132 KOG0495 HAT repeat protein [RN 99.0 2.8E-08 6.1E-13 79.7 14.0 136 2-137 690-860 (913)
133 COG4785 NlpI Lipoprotein NlpI, 99.0 8.2E-09 1.8E-13 72.4 9.7 89 4-92 72-160 (297)
134 PF14938 SNAP: Soluble NSF att 99.0 2.5E-08 5.5E-13 75.0 13.2 117 10-126 87-228 (282)
135 KOG1130 Predicted G-alpha GTPa 99.0 6.9E-09 1.5E-13 79.2 9.6 125 2-126 200-347 (639)
136 KOG4162 Predicted calmodulin-b 99.0 6.1E-09 1.3E-13 84.5 9.8 90 3-92 690-781 (799)
137 KOG4648 Uncharacterized conser 99.0 4.5E-09 9.8E-14 78.4 8.4 92 35-126 101-197 (536)
138 COG1729 Uncharacterized protei 98.9 3E-08 6.4E-13 72.1 12.0 93 34-126 144-247 (262)
139 KOG4648 Uncharacterized conser 98.9 7.3E-09 1.6E-13 77.3 8.9 90 3-92 103-192 (536)
140 KOG4642 Chaperone-dependent E3 98.9 1.4E-08 3E-13 72.1 9.8 89 4-92 17-105 (284)
141 KOG1130 Predicted G-alpha GTPa 98.9 7E-10 1.5E-14 84.4 3.5 43 2-44 100-148 (639)
142 PF12569 NARP1: NMDA receptor- 98.9 1.1E-07 2.4E-12 76.6 16.0 58 69-126 198-260 (517)
143 PF04733 Coatomer_E: Coatomer 98.9 1.7E-08 3.6E-13 75.9 10.8 121 4-129 109-236 (290)
144 PF13424 TPR_12: Tetratricopep 98.9 4.2E-09 9E-14 63.4 6.2 65 28-92 2-73 (78)
145 cd05804 StaR_like StaR_like; a 98.9 5.4E-08 1.2E-12 75.5 13.6 144 3-146 12-207 (355)
146 PF14559 TPR_19: Tetratricopep 98.9 8.3E-09 1.8E-13 60.3 6.9 51 42-92 2-52 (68)
147 PF13424 TPR_12: Tetratricopep 98.9 1.5E-09 3.2E-14 65.4 3.6 63 62-124 2-76 (78)
148 PF13512 TPR_18: Tetratricopep 98.9 6.6E-08 1.4E-12 63.9 11.5 113 3-129 16-134 (142)
149 KOG4555 TPR repeat-containing 98.9 5.4E-08 1.2E-12 62.8 10.4 88 38-125 50-146 (175)
150 KOG1174 Anaphase-promoting com 98.9 8.6E-08 1.9E-12 73.3 13.0 125 2-126 237-400 (564)
151 COG1729 Uncharacterized protei 98.9 5.7E-08 1.2E-12 70.6 11.5 90 3-92 147-242 (262)
152 COG4700 Uncharacterized protei 98.9 2.5E-07 5.5E-12 63.5 13.7 119 3-121 95-220 (251)
153 PF09295 ChAPs: ChAPs (Chs5p-A 98.9 4.5E-08 9.7E-13 76.1 11.4 89 3-91 206-294 (395)
154 PRK11906 transcriptional regul 98.9 1.4E-07 3.1E-12 73.5 13.6 111 12-122 319-435 (458)
155 KOG2376 Signal recognition par 98.8 4.1E-07 8.8E-12 72.3 16.1 120 4-126 86-256 (652)
156 PF14938 SNAP: Soluble NSF att 98.8 4.2E-08 9.1E-13 73.8 10.4 121 3-124 41-185 (282)
157 PRK10866 outer membrane biogen 98.8 4.9E-07 1.1E-11 66.3 15.7 118 2-119 74-237 (243)
158 PF04733 Coatomer_E: Coatomer 98.8 1.7E-07 3.7E-12 70.5 13.4 125 4-128 138-270 (290)
159 KOG1127 TPR repeat-containing 98.8 3.1E-08 6.6E-13 82.7 9.9 120 3-122 568-699 (1238)
160 KOG4555 TPR repeat-containing 98.8 5.4E-07 1.2E-11 58.3 13.0 89 4-92 50-142 (175)
161 KOG3785 Uncharacterized conser 98.8 1.9E-07 4.1E-12 70.3 12.5 85 7-91 32-117 (557)
162 PF13371 TPR_9: Tetratricopept 98.8 4.8E-08 1E-12 57.9 7.7 55 38-92 2-56 (73)
163 COG4105 ComL DNA uptake lipopr 98.8 1.8E-06 3.8E-11 62.5 16.9 142 3-144 40-217 (254)
164 KOG1941 Acetylcholine receptor 98.8 1.2E-07 2.6E-12 71.4 11.3 135 3-137 128-289 (518)
165 KOG4234 TPR repeat-containing 98.8 1.5E-07 3.3E-12 65.3 10.2 94 34-127 98-201 (271)
166 PLN03218 maturation of RBCL 1; 98.7 2.5E-06 5.4E-11 74.5 19.1 90 33-122 581-677 (1060)
167 PLN03098 LPA1 LOW PSII ACCUMUL 98.7 6.3E-08 1.4E-12 75.3 8.4 59 2-60 80-141 (453)
168 PLN03218 maturation of RBCL 1; 98.7 2.6E-06 5.6E-11 74.4 19.1 117 4-121 586-711 (1060)
169 PF13525 YfiO: Outer membrane 98.7 9.5E-07 2E-11 63.2 13.4 102 30-131 4-127 (203)
170 PF06552 TOM20_plant: Plant sp 98.7 7.1E-07 1.5E-11 61.1 11.8 96 13-126 7-112 (186)
171 COG3071 HemY Uncharacterized e 98.7 1.2E-06 2.6E-11 66.6 14.2 119 3-124 269-391 (400)
172 KOG2796 Uncharacterized conser 98.7 8.9E-07 1.9E-11 64.1 12.7 141 3-143 183-335 (366)
173 PLN03081 pentatricopeptide (PP 98.7 8.3E-07 1.8E-11 75.0 14.9 120 3-123 296-420 (697)
174 KOG4340 Uncharacterized conser 98.7 3.4E-07 7.3E-12 67.4 10.7 117 8-124 21-174 (459)
175 PF13428 TPR_14: Tetratricopep 98.7 5.6E-08 1.2E-12 51.5 4.9 43 31-73 1-43 (44)
176 PLN03081 pentatricopeptide (PP 98.7 6.5E-07 1.4E-11 75.7 13.5 123 3-126 397-526 (697)
177 KOG4340 Uncharacterized conser 98.7 1.8E-07 3.8E-12 68.9 8.7 123 2-124 49-208 (459)
178 KOG3785 Uncharacterized conser 98.7 1.3E-06 2.8E-11 65.9 12.8 124 3-126 63-217 (557)
179 KOG2376 Signal recognition par 98.6 1.3E-06 2.8E-11 69.6 12.6 119 7-126 22-142 (652)
180 PF13512 TPR_18: Tetratricopep 98.6 3.5E-06 7.6E-11 55.8 12.4 79 31-109 10-99 (142)
181 PF13431 TPR_17: Tetratricopep 98.5 1.2E-07 2.6E-12 47.1 3.1 31 54-84 2-32 (34)
182 PF13431 TPR_17: Tetratricopep 98.5 1.2E-07 2.7E-12 47.1 3.2 33 19-51 1-33 (34)
183 COG4700 Uncharacterized protei 98.5 1.6E-05 3.6E-10 54.8 13.7 120 6-126 65-192 (251)
184 PLN03077 Protein ECB2; Provisi 98.5 4.6E-06 1E-10 72.2 13.9 123 3-126 560-689 (857)
185 PF05843 Suf: Suppressor of fo 98.5 9E-06 1.9E-10 61.1 13.3 120 7-126 11-139 (280)
186 COG3071 HemY Uncharacterized e 98.5 5.1E-05 1.1E-09 58.0 17.0 124 3-126 159-360 (400)
187 PLN03077 Protein ECB2; Provisi 98.4 1.7E-05 3.7E-10 68.7 16.1 118 3-126 530-656 (857)
188 PRK10153 DNA-binding transcrip 98.4 6.8E-06 1.5E-10 66.7 12.5 120 26-145 332-473 (517)
189 KOG1586 Protein required for f 98.4 4E-05 8.7E-10 54.7 14.6 139 6-144 82-247 (288)
190 PF10300 DUF3808: Protein of u 98.4 1.4E-05 2.9E-10 64.4 13.9 116 10-125 246-378 (468)
191 KOG4642 Chaperone-dependent E3 98.4 1.3E-06 2.8E-11 62.3 7.1 90 36-125 15-109 (284)
192 KOG2053 Mitochondrial inherita 98.4 2.3E-05 5E-10 65.4 15.2 122 7-128 19-144 (932)
193 KOG0376 Serine-threonine phosp 98.4 7.6E-07 1.7E-11 69.3 5.8 90 3-92 10-99 (476)
194 COG4785 NlpI Lipoprotein NlpI, 98.4 3E-06 6.5E-11 59.8 8.2 109 31-139 65-178 (297)
195 KOG1915 Cell cycle control pro 98.4 1.8E-05 3.8E-10 62.0 13.1 118 8-126 415-539 (677)
196 PRK04841 transcriptional regul 98.4 2.1E-05 4.6E-10 68.5 15.0 123 3-125 458-604 (903)
197 PF13428 TPR_14: Tetratricopep 98.3 1.4E-06 3.1E-11 46.0 4.7 38 2-39 6-43 (44)
198 KOG0551 Hsp90 co-chaperone CNS 98.3 4.9E-06 1.1E-10 62.1 8.9 90 3-92 87-180 (390)
199 PF00515 TPR_1: Tetratricopept 98.3 1E-06 2.2E-11 43.8 3.8 34 31-64 1-34 (34)
200 COG0457 NrfG FOG: TPR repeat [ 98.3 7.9E-05 1.7E-09 53.1 15.1 123 4-126 102-234 (291)
201 COG0457 NrfG FOG: TPR repeat [ 98.3 8.3E-05 1.8E-09 53.0 15.2 121 6-126 139-268 (291)
202 KOG1308 Hsp70-interacting prot 98.3 5.2E-07 1.1E-11 67.4 3.5 90 3-92 120-209 (377)
203 PRK04841 transcriptional regul 98.3 2.5E-05 5.4E-10 68.1 14.3 125 2-126 496-644 (903)
204 PF07719 TPR_2: Tetratricopept 98.3 2E-06 4.3E-11 42.6 4.4 33 32-64 2-34 (34)
205 PF00515 TPR_1: Tetratricopept 98.3 3.4E-06 7.3E-11 41.8 4.6 33 94-126 1-33 (34)
206 KOG3081 Vesicle coat complex C 98.3 0.00013 2.8E-09 53.2 14.2 123 4-133 115-246 (299)
207 KOG0545 Aryl-hydrocarbon recep 98.2 3.7E-05 8E-10 55.3 11.3 108 33-143 180-310 (329)
208 KOG0545 Aryl-hydrocarbon recep 98.2 2.7E-05 5.9E-10 56.0 10.3 91 2-92 183-291 (329)
209 KOG1915 Cell cycle control pro 98.2 6E-05 1.3E-09 59.2 12.9 119 8-126 84-206 (677)
210 PF03704 BTAD: Bacterial trans 98.2 4.6E-05 9.9E-10 51.5 11.1 89 4-92 13-123 (146)
211 KOG1941 Acetylcholine receptor 98.2 1.5E-05 3.2E-10 60.5 9.1 123 2-124 88-236 (518)
212 PF07719 TPR_2: Tetratricopept 98.2 6.7E-06 1.5E-10 40.7 4.7 32 95-126 2-33 (34)
213 COG2976 Uncharacterized protei 98.2 0.00037 7.9E-09 48.6 14.3 93 34-126 92-191 (207)
214 KOG0376 Serine-threonine phosp 98.1 5.5E-06 1.2E-10 64.7 5.2 99 36-134 9-112 (476)
215 KOG2610 Uncharacterized conser 98.1 0.00012 2.5E-09 55.2 11.6 114 8-121 148-274 (491)
216 PF13281 DUF4071: Domain of un 98.1 0.00041 8.9E-09 53.7 14.5 126 3-129 185-340 (374)
217 KOG1070 rRNA processing protei 98.1 0.00016 3.5E-09 63.3 13.4 122 3-124 1536-1664(1710)
218 COG4105 ComL DNA uptake lipopr 98.0 0.0011 2.4E-08 48.3 15.6 123 3-126 77-236 (254)
219 KOG2471 TPR repeat-containing 98.0 1.3E-05 2.8E-10 62.9 5.9 103 4-106 247-381 (696)
220 KOG2471 TPR repeat-containing 98.0 5.1E-05 1.1E-09 59.7 8.8 120 7-126 216-367 (696)
221 COG3118 Thioredoxin domain-con 98.0 0.00094 2E-08 49.6 14.6 123 4-126 141-268 (304)
222 PF06552 TOM20_plant: Plant sp 98.0 5.4E-05 1.2E-09 52.0 7.7 62 12-73 50-122 (186)
223 PF04184 ST7: ST7 protein; In 98.0 0.00031 6.6E-09 55.6 12.8 113 7-121 178-322 (539)
224 PF05843 Suf: Suppressor of fo 97.9 0.00046 9.9E-09 52.0 12.9 95 32-126 2-102 (280)
225 PF13181 TPR_8: Tetratricopept 97.9 1.8E-05 4E-10 39.1 3.6 32 32-63 2-33 (34)
226 KOG1585 Protein required for f 97.9 0.00086 1.9E-08 48.5 12.7 117 4-120 38-176 (308)
227 PF04781 DUF627: Protein of un 97.8 0.00062 1.3E-08 43.1 9.8 90 3-92 2-105 (111)
228 KOG3081 Vesicle coat complex C 97.8 0.0034 7.3E-08 46.0 14.8 120 5-126 145-274 (299)
229 KOG2610 Uncharacterized conser 97.8 0.00099 2.1E-08 50.4 12.2 116 6-121 112-236 (491)
230 PF09613 HrpB1_HrpK: Bacterial 97.8 0.0042 9E-08 42.2 13.9 75 7-81 20-94 (160)
231 PF13181 TPR_8: Tetratricopept 97.8 6.3E-05 1.4E-09 37.1 4.1 32 95-126 2-33 (34)
232 KOG1586 Protein required for f 97.8 0.00097 2.1E-08 47.9 11.0 120 6-126 43-186 (288)
233 PF10300 DUF3808: Protein of u 97.7 0.0039 8.5E-08 50.4 15.8 115 10-125 201-336 (468)
234 PF12968 DUF3856: Domain of Un 97.7 0.0021 4.6E-08 41.1 10.6 81 43-123 21-129 (144)
235 KOG2796 Uncharacterized conser 97.7 0.0012 2.5E-08 48.4 10.7 114 33-146 179-307 (366)
236 PF14561 TPR_20: Tetratricopep 97.7 0.0018 4E-08 39.8 10.2 75 16-90 7-83 (90)
237 KOG2047 mRNA splicing factor [ 97.7 0.0039 8.5E-08 51.1 14.4 123 4-126 432-582 (835)
238 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00036 7.7E-09 52.5 8.0 94 33-126 83-185 (390)
239 PF03704 BTAD: Bacterial trans 97.7 0.00043 9.3E-09 46.7 8.0 57 3-59 68-124 (146)
240 COG2976 Uncharacterized protei 97.7 0.00086 1.9E-08 46.8 9.3 89 3-92 95-186 (207)
241 PRK10941 hypothetical protein; 97.6 0.00061 1.3E-08 50.7 9.2 68 2-69 186-253 (269)
242 PF13174 TPR_6: Tetratricopept 97.6 0.00011 2.4E-09 35.8 3.7 32 33-64 2-33 (33)
243 KOG1585 Protein required for f 97.6 0.0065 1.4E-07 44.1 13.0 141 4-144 78-241 (308)
244 PF08424 NRDE-2: NRDE-2, neces 97.6 0.01 2.2E-07 45.6 15.2 112 13-124 47-184 (321)
245 PF12968 DUF3856: Domain of Un 97.5 0.0054 1.2E-07 39.4 10.9 89 4-92 16-127 (144)
246 TIGR02561 HrpB1_HrpK type III 97.5 0.01 2.3E-07 39.7 12.7 100 8-121 21-120 (153)
247 PF13176 TPR_7: Tetratricopept 97.5 0.00018 4E-09 36.0 3.5 26 34-59 2-27 (36)
248 KOG2047 mRNA splicing factor [ 97.5 0.016 3.5E-07 47.7 15.8 119 6-124 356-507 (835)
249 PF13176 TPR_7: Tetratricopept 97.5 0.00031 6.7E-09 35.2 4.0 29 96-124 1-29 (36)
250 PF04184 ST7: ST7 protein; In 97.5 0.0038 8.2E-08 49.7 11.6 90 35-126 172-291 (539)
251 KOG1070 rRNA processing protei 97.4 0.0082 1.8E-07 53.3 13.9 94 33-126 1532-1632(1710)
252 PF13174 TPR_6: Tetratricopept 97.4 0.00043 9.3E-09 33.6 3.8 31 96-126 2-32 (33)
253 PRK15180 Vi polysaccharide bio 97.4 0.0025 5.4E-08 50.6 9.5 119 8-126 300-423 (831)
254 KOG3824 Huntingtin interacting 97.3 0.00094 2E-08 50.0 6.7 70 4-73 123-192 (472)
255 KOG1550 Extracellular protein 97.3 0.0085 1.8E-07 49.6 13.0 114 10-125 262-395 (552)
256 smart00028 TPR Tetratricopepti 97.3 0.00062 1.4E-08 32.3 4.0 32 32-63 2-33 (34)
257 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.0019 4.1E-08 35.3 5.8 45 96-140 3-47 (53)
258 PF14853 Fis1_TPR_C: Fis1 C-te 97.3 0.002 4.3E-08 35.2 5.8 40 33-72 3-42 (53)
259 PF09986 DUF2225: Uncharacteri 97.3 0.011 2.4E-07 42.6 11.3 82 44-125 90-196 (214)
260 COG4976 Predicted methyltransf 97.2 0.00069 1.5E-08 48.5 4.9 61 4-64 2-62 (287)
261 KOG1308 Hsp70-interacting prot 97.2 0.00015 3.3E-09 54.6 1.7 88 39-126 122-214 (377)
262 KOG2300 Uncharacterized conser 97.2 0.023 4.9E-07 45.3 12.8 120 5-124 331-475 (629)
263 KOG3617 WD40 and TPR repeat-co 97.2 0.011 2.3E-07 50.1 11.6 91 33-123 860-996 (1416)
264 COG3118 Thioredoxin domain-con 97.1 0.017 3.7E-07 43.1 11.4 112 33-145 136-256 (304)
265 PF10602 RPN7: 26S proteasome 97.1 0.016 3.6E-07 40.5 10.8 92 32-123 37-142 (177)
266 smart00028 TPR Tetratricopepti 97.1 0.0012 2.7E-08 31.2 3.6 32 95-126 2-33 (34)
267 KOG2300 Uncharacterized conser 97.1 0.063 1.4E-06 43.0 14.3 124 3-126 373-517 (629)
268 COG0790 FOG: TPR repeat, SEL1 97.0 0.056 1.2E-06 40.9 14.1 114 10-125 90-222 (292)
269 KOG0530 Protein farnesyltransf 97.0 0.051 1.1E-06 40.1 12.8 117 9-125 55-178 (318)
270 COG3898 Uncharacterized membra 97.0 0.081 1.8E-06 41.3 14.2 87 5-92 128-215 (531)
271 KOG2053 Mitochondrial inherita 97.0 0.013 2.9E-07 49.7 10.7 84 43-126 21-109 (932)
272 COG0790 FOG: TPR repeat, SEL1 97.0 0.1 2.3E-06 39.4 15.3 122 2-126 114-269 (292)
273 PF13281 DUF4071: Domain of un 96.9 0.039 8.4E-07 43.1 11.8 96 31-126 141-258 (374)
274 KOG3617 WD40 and TPR repeat-co 96.8 0.052 1.1E-06 46.3 12.9 83 40-124 835-942 (1416)
275 PF14561 TPR_20: Tetratricopep 96.8 0.027 5.8E-07 34.6 8.7 43 50-92 7-49 (90)
276 PF09613 HrpB1_HrpK: Bacterial 96.8 0.054 1.2E-06 36.9 10.7 109 32-142 11-124 (160)
277 KOG4507 Uncharacterized conser 96.8 0.0034 7.3E-08 51.0 5.8 83 10-92 620-703 (886)
278 PF15015 NYD-SP12_N: Spermatog 96.8 0.026 5.7E-07 44.2 10.3 89 4-92 183-289 (569)
279 PF09986 DUF2225: Uncharacteri 96.7 0.019 4E-07 41.5 8.7 83 10-92 90-192 (214)
280 PF04910 Tcf25: Transcriptiona 96.7 0.084 1.8E-06 41.3 12.7 36 24-59 33-68 (360)
281 PF02259 FAT: FAT domain; Int 96.7 0.15 3.4E-06 39.4 14.3 57 3-59 152-212 (352)
282 PF10602 RPN7: 26S proteasome 96.7 0.047 1E-06 38.2 10.1 91 2-92 41-140 (177)
283 KOG1914 mRNA cleavage and poly 96.7 0.08 1.7E-06 42.9 12.2 91 21-112 10-105 (656)
284 COG3898 Uncharacterized membra 96.6 0.23 5E-06 38.9 16.0 118 9-126 166-361 (531)
285 PRK10941 hypothetical protein; 96.6 0.02 4.4E-07 42.7 8.3 60 33-92 183-242 (269)
286 PF08424 NRDE-2: NRDE-2, neces 96.6 0.22 4.8E-06 38.4 14.2 108 18-125 6-133 (321)
287 KOG3364 Membrane protein invol 96.6 0.098 2.1E-06 34.5 10.2 63 66-128 33-105 (149)
288 PF04910 Tcf25: Transcriptiona 96.5 0.19 4.1E-06 39.4 13.6 124 3-126 46-225 (360)
289 KOG4814 Uncharacterized conser 96.5 0.043 9.3E-07 45.3 10.0 89 4-92 361-455 (872)
290 KOG4507 Uncharacterized conser 96.5 0.016 3.4E-07 47.3 7.5 75 2-76 647-721 (886)
291 KOG1550 Extracellular protein 96.4 0.076 1.6E-06 44.1 11.4 110 13-124 228-358 (552)
292 KOG2396 HAT (Half-A-TPR) repea 96.3 0.092 2E-06 42.2 10.5 78 15-92 89-167 (568)
293 PF13374 TPR_10: Tetratricopep 96.3 0.013 2.9E-07 29.8 4.3 30 95-124 3-32 (42)
294 PF04781 DUF627: Protein of un 96.3 0.14 3.1E-06 32.5 9.4 87 37-123 2-107 (111)
295 PF13374 TPR_10: Tetratricopep 96.2 0.011 2.4E-07 30.1 3.9 28 33-60 4-31 (42)
296 KOG1310 WD40 repeat protein [G 96.1 0.032 7E-07 45.0 7.1 82 45-126 388-477 (758)
297 TIGR02561 HrpB1_HrpK type III 96.0 0.17 3.7E-06 34.0 9.4 90 34-124 13-107 (153)
298 COG2912 Uncharacterized conser 96.0 0.042 9.1E-07 40.7 7.1 57 36-92 186-242 (269)
299 PF07079 DUF1347: Protein of u 95.9 0.45 9.7E-06 38.1 12.6 115 4-120 386-521 (549)
300 PF12862 Apc5: Anaphase-promot 95.9 0.046 1E-06 33.9 6.2 56 7-62 8-72 (94)
301 PF07079 DUF1347: Protein of u 95.9 0.68 1.5E-05 37.1 13.8 121 3-123 12-157 (549)
302 KOG1839 Uncharacterized protei 95.9 0.078 1.7E-06 47.1 9.2 122 4-125 939-1088(1236)
303 PF10373 EST1_DNA_bind: Est1 D 95.8 0.076 1.7E-06 39.7 8.2 62 16-77 1-62 (278)
304 KOG0985 Vesicle coat protein c 95.7 0.76 1.6E-05 40.6 13.9 87 43-134 1087-1173(1666)
305 COG3914 Spy Predicted O-linked 95.7 0.46 1E-05 39.1 12.1 112 16-127 50-175 (620)
306 KOG3364 Membrane protein invol 95.6 0.16 3.4E-06 33.6 7.8 61 32-92 33-98 (149)
307 PF12862 Apc5: Anaphase-promot 95.6 0.2 4.4E-06 31.0 8.2 52 41-92 8-68 (94)
308 COG3629 DnrI DNA-binding trans 95.6 0.1 2.2E-06 39.2 7.8 59 33-91 155-213 (280)
309 KOG2396 HAT (Half-A-TPR) repea 95.6 0.24 5.2E-06 39.9 10.0 87 48-134 88-180 (568)
310 KOG3807 Predicted membrane pro 95.5 0.7 1.5E-05 35.6 11.7 106 7-114 194-331 (556)
311 PF07721 TPR_4: Tetratricopept 95.4 0.029 6.3E-07 25.6 2.9 22 33-54 3-24 (26)
312 KOG1310 WD40 repeat protein [G 95.4 0.093 2E-06 42.5 7.3 84 9-92 386-472 (758)
313 KOG1839 Uncharacterized protei 95.3 0.12 2.6E-06 46.0 8.2 125 1-125 977-1130(1236)
314 PF07720 TPR_3: Tetratricopept 95.3 0.073 1.6E-06 26.5 4.3 31 32-62 2-34 (36)
315 PF10373 EST1_DNA_bind: Est1 D 95.2 0.12 2.6E-06 38.7 7.5 57 50-106 1-62 (278)
316 COG4976 Predicted methyltransf 95.1 0.045 9.7E-07 39.6 4.4 53 40-92 4-56 (287)
317 KOG2581 26S proteasome regulat 95.1 1.3 2.8E-05 35.0 12.9 118 9-126 138-279 (493)
318 KOG3824 Huntingtin interacting 95.1 0.16 3.4E-06 38.5 7.3 56 37-92 122-177 (472)
319 PF04053 Coatomer_WDAD: Coatom 95.1 1.5 3.2E-05 35.5 13.4 67 43-117 330-396 (443)
320 COG2909 MalT ATP-dependent tra 95.1 1.4 3E-05 38.2 13.5 123 4-126 465-650 (894)
321 KOG4814 Uncharacterized conser 95.1 0.52 1.1E-05 39.3 10.7 88 36-123 359-457 (872)
322 PF08631 SPO22: Meiosis protei 95.0 1.1 2.4E-05 33.8 15.1 119 7-125 3-152 (278)
323 PF10516 SHNi-TPR: SHNi-TPR; 94.9 0.055 1.2E-06 27.3 3.3 28 33-60 3-30 (38)
324 KOG3807 Predicted membrane pro 94.9 1.2 2.6E-05 34.3 11.6 91 33-125 186-306 (556)
325 COG3629 DnrI DNA-binding trans 94.8 0.18 3.9E-06 37.9 7.1 58 3-60 159-216 (280)
326 PF04053 Coatomer_WDAD: Coatom 94.8 0.52 1.1E-05 38.1 10.2 84 28-119 344-427 (443)
327 PF08631 SPO22: Meiosis protei 94.8 1 2.2E-05 34.0 11.3 86 41-126 3-119 (278)
328 PF07721 TPR_4: Tetratricopept 94.7 0.054 1.2E-06 24.6 2.8 22 67-88 3-24 (26)
329 PRK13184 pknD serine/threonine 94.7 0.45 9.8E-06 41.9 10.2 92 37-128 481-586 (932)
330 KOG4014 Uncharacterized conser 94.6 0.98 2.1E-05 31.7 9.7 95 10-107 48-157 (248)
331 KOG1258 mRNA processing protei 94.5 1.7 3.8E-05 35.9 12.4 110 14-123 62-180 (577)
332 PF10579 Rapsyn_N: Rapsyn N-te 94.5 0.38 8.3E-06 28.5 6.5 47 41-87 16-65 (80)
333 KOG0530 Protein farnesyltransf 94.4 0.68 1.5E-05 34.4 9.0 130 11-140 92-233 (318)
334 PF10579 Rapsyn_N: Rapsyn N-te 94.4 0.41 9E-06 28.4 6.5 56 4-59 13-71 (80)
335 PF11817 Foie-gras_1: Foie gra 94.4 0.69 1.5E-05 34.2 9.4 76 46-121 153-245 (247)
336 PF11207 DUF2989: Protein of u 94.4 0.95 2.1E-05 32.2 9.4 53 31-84 141-197 (203)
337 COG5191 Uncharacterized conser 94.4 0.099 2.2E-06 39.6 4.8 71 22-92 98-169 (435)
338 KOG2041 WD40 repeat protein [G 94.4 0.48 1E-05 40.0 9.0 85 7-91 770-878 (1189)
339 PF09670 Cas_Cas02710: CRISPR- 94.3 2.2 4.7E-05 33.8 13.1 122 3-124 137-271 (379)
340 KOG1258 mRNA processing protei 94.0 3.1 6.7E-05 34.5 14.4 108 8-115 308-421 (577)
341 PF10345 Cohesin_load: Cohesin 94.0 3.4 7.4E-05 35.0 13.9 109 15-124 39-169 (608)
342 KOG2041 WD40 repeat protein [G 94.0 0.61 1.3E-05 39.4 8.9 102 10-119 747-877 (1189)
343 COG3947 Response regulator con 93.9 0.22 4.9E-06 37.4 5.9 59 34-92 282-340 (361)
344 PF10345 Cohesin_load: Cohesin 93.9 3.5 7.6E-05 35.0 13.8 118 3-121 65-206 (608)
345 PF10516 SHNi-TPR: SHNi-TPR; 93.9 0.13 2.7E-06 26.0 3.3 28 96-123 3-30 (38)
346 COG4455 ImpE Protein of avirul 93.9 0.76 1.6E-05 33.2 8.2 70 5-74 9-81 (273)
347 PF10255 Paf67: RNA polymerase 93.7 0.22 4.8E-06 39.4 5.9 59 33-92 124-191 (404)
348 smart00386 HAT HAT (Half-A-TPR 93.7 0.29 6.3E-06 22.9 4.4 27 12-38 2-28 (33)
349 PRK13184 pknD serine/threonine 93.7 4.9 0.00011 35.8 15.4 120 5-127 483-624 (932)
350 COG5107 RNA14 Pre-mRNA 3'-end 93.6 3.3 7.1E-05 33.5 12.9 89 19-107 30-122 (660)
351 COG5191 Uncharacterized conser 93.3 0.18 3.9E-06 38.2 4.6 63 9-71 119-182 (435)
352 COG2909 MalT ATP-dependent tra 93.2 5.3 0.00012 34.9 14.0 106 4-109 422-552 (894)
353 PF02259 FAT: FAT domain; Int 93.2 3.1 6.7E-05 32.2 14.1 98 29-126 144-290 (352)
354 COG3947 Response regulator con 93.0 0.59 1.3E-05 35.2 6.8 56 67-122 281-341 (361)
355 PF07720 TPR_3: Tetratricopept 92.9 0.54 1.2E-05 23.3 4.6 30 96-125 3-34 (36)
356 smart00386 HAT HAT (Half-A-TPR 92.8 0.33 7.1E-06 22.7 3.9 30 45-74 1-30 (33)
357 COG3914 Spy Predicted O-linked 92.8 3.8 8.2E-05 34.1 11.4 86 7-92 77-169 (620)
358 COG2912 Uncharacterized conser 92.8 0.59 1.3E-05 34.8 6.5 65 5-69 189-253 (269)
359 KOG0546 HSP90 co-chaperone CPR 92.6 0.15 3.2E-06 39.2 3.3 71 3-73 281-351 (372)
360 PF10255 Paf67: RNA polymerase 92.5 0.33 7.1E-06 38.5 5.2 55 68-122 125-192 (404)
361 KOG2422 Uncharacterized conser 92.0 6.3 0.00014 32.8 12.4 124 3-126 290-451 (665)
362 PF12854 PPR_1: PPR repeat 91.9 0.51 1.1E-05 23.0 3.8 24 66-89 8-31 (34)
363 TIGR03504 FimV_Cterm FimV C-te 91.9 0.39 8.4E-06 25.1 3.4 24 2-25 4-27 (44)
364 KOG0529 Protein geranylgeranyl 91.8 5 0.00011 31.8 10.7 118 11-128 89-229 (421)
365 COG5159 RPN6 26S proteasome re 91.8 4.5 9.8E-05 30.7 12.2 47 3-49 9-63 (421)
366 PF13041 PPR_2: PPR repeat fam 91.6 1.2 2.6E-05 23.6 5.5 27 33-59 5-31 (50)
367 KOG0985 Vesicle coat protein c 91.5 10 0.00022 34.2 14.2 50 3-57 1110-1159(1666)
368 PF12854 PPR_1: PPR repeat 91.5 0.65 1.4E-05 22.6 3.9 27 93-119 6-32 (34)
369 KOG0128 RNA-binding protein SA 91.5 8.6 0.00019 33.4 12.4 112 14-125 96-221 (881)
370 KOG3616 Selective LIM binding 91.4 2.1 4.6E-05 36.8 8.8 115 4-121 668-818 (1636)
371 TIGR03504 FimV_Cterm FimV C-te 91.1 0.67 1.5E-05 24.2 3.9 26 98-123 3-28 (44)
372 COG4649 Uncharacterized protei 91.0 4 8.7E-05 28.6 15.4 115 8-122 69-195 (221)
373 KOG0276 Vesicle coat complex C 90.9 5.8 0.00013 33.3 10.6 70 14-92 624-693 (794)
374 KOG3616 Selective LIM binding 90.8 2 4.4E-05 36.9 8.2 76 34-117 768-847 (1636)
375 PF11207 DUF2989: Protein of u 90.6 4.8 0.0001 28.8 9.6 61 81-142 122-189 (203)
376 KOG1464 COP9 signalosome, subu 90.3 3.2 6.9E-05 31.2 8.0 49 11-59 41-93 (440)
377 KOG2422 Uncharacterized conser 90.3 6.1 0.00013 32.9 10.2 111 10-120 251-404 (665)
378 KOG0546 HSP90 co-chaperone CPR 90.2 0.7 1.5E-05 35.7 4.8 91 2-92 227-336 (372)
379 PF11817 Foie-gras_1: Foie gra 90.2 1.6 3.6E-05 32.3 6.7 78 14-91 155-244 (247)
380 KOG0276 Vesicle coat complex C 90.1 4.1 9E-05 34.1 9.2 48 76-123 648-695 (794)
381 KOG1464 COP9 signalosome, subu 90.0 6.5 0.00014 29.7 9.4 50 43-92 39-92 (440)
382 PHA02537 M terminase endonucle 89.9 6.1 0.00013 28.9 9.5 34 93-126 168-210 (230)
383 COG1747 Uncharacterized N-term 89.9 10 0.00022 31.4 14.1 111 17-130 86-241 (711)
384 PF04190 DUF410: Protein of un 89.5 7.3 0.00016 29.2 11.8 26 63-88 88-113 (260)
385 PF14863 Alkyl_sulf_dimr: Alky 89.1 1.8 3.9E-05 29.1 5.6 53 30-82 69-121 (141)
386 PF15015 NYD-SP12_N: Spermatog 89.1 2.2 4.8E-05 34.0 6.7 84 38-121 183-289 (569)
387 KOG0890 Protein kinase of the 88.9 17 0.00037 35.6 13.1 95 30-126 1669-1787(2382)
388 smart00299 CLH Clathrin heavy 88.8 5.1 0.00011 26.5 10.0 49 6-55 16-64 (140)
389 KOG0686 COP9 signalosome, subu 88.5 6.2 0.00013 31.4 8.8 88 33-120 152-255 (466)
390 KOG1538 Uncharacterized conser 88.2 2 4.3E-05 36.3 6.3 52 66-117 805-860 (1081)
391 KOG4279 Serine/threonine prote 88.1 6.4 0.00014 34.0 9.2 124 10-134 256-406 (1226)
392 KOG0686 COP9 signalosome, subu 87.8 9.7 0.00021 30.4 9.4 91 2-92 155-256 (466)
393 KOG1914 mRNA cleavage and poly 87.7 15 0.00032 30.6 14.3 113 9-122 31-165 (656)
394 KOG1497 COP9 signalosome, subu 87.7 11 0.00024 29.1 10.4 88 33-121 105-211 (399)
395 KOG2581 26S proteasome regulat 87.6 7 0.00015 31.2 8.6 82 4-85 216-307 (493)
396 COG5107 RNA14 Pre-mRNA 3'-end 87.3 13 0.00029 30.2 10.0 23 104-126 442-464 (660)
397 PF01535 PPR: PPR repeat; Int 87.3 1.3 2.9E-05 20.3 3.2 26 97-122 3-28 (31)
398 PF13041 PPR_2: PPR repeat fam 86.9 2.3 5E-05 22.5 4.3 31 94-124 3-33 (50)
399 PF11846 DUF3366: Domain of un 86.1 3.6 7.8E-05 29.1 6.1 44 18-62 132-175 (193)
400 KOG0687 26S proteasome regulat 84.8 17 0.00036 28.3 10.3 96 31-126 104-213 (393)
401 PF14863 Alkyl_sulf_dimr: Alky 84.5 6.3 0.00014 26.5 6.3 43 4-46 77-119 (141)
402 KOG2561 Adaptor protein NUB1, 84.3 15 0.00033 29.7 9.0 22 71-92 273-294 (568)
403 KOG3783 Uncharacterized conser 84.2 23 0.00049 29.4 11.1 77 14-92 250-330 (546)
404 PF09797 NatB_MDM20: N-acetylt 84.1 16 0.00035 28.8 9.5 44 13-56 199-242 (365)
405 COG4649 Uncharacterized protei 84.0 12 0.00027 26.2 10.9 89 4-92 101-194 (221)
406 PF05053 Menin: Menin; InterP 83.5 11 0.00025 31.3 8.3 64 82-145 296-372 (618)
407 PRK15180 Vi polysaccharide bio 83.4 5.6 0.00012 32.5 6.5 89 4-92 330-418 (831)
408 TIGR00756 PPR pentatricopeptid 83.3 3.4 7.4E-05 19.3 3.9 26 97-122 3-28 (35)
409 PF10952 DUF2753: Protein of u 83.2 10 0.00023 24.8 7.3 79 34-126 4-86 (140)
410 PF09205 DUF1955: Domain of un 82.8 12 0.00026 25.1 7.1 49 75-123 96-149 (161)
411 cd02680 MIT_calpain7_2 MIT: do 82.4 2.9 6.2E-05 24.7 3.6 16 44-59 19-34 (75)
412 PF09205 DUF1955: Domain of un 82.0 13 0.00028 24.9 7.0 54 39-92 94-147 (161)
413 cd02680 MIT_calpain7_2 MIT: do 81.2 4.1 8.8E-05 24.1 3.9 16 77-92 18-33 (75)
414 cd02682 MIT_AAA_Arch MIT: doma 80.6 9.4 0.0002 22.5 6.3 22 69-90 10-31 (75)
415 TIGR03362 VI_chp_7 type VI sec 80.3 24 0.00053 27.1 14.1 117 8-125 110-281 (301)
416 KOG4014 Uncharacterized conser 80.2 19 0.0004 25.6 11.4 110 10-123 86-233 (248)
417 KOG2114 Vacuolar assembly/sort 79.6 21 0.00046 31.3 8.8 52 7-59 344-396 (933)
418 cd02681 MIT_calpain7_1 MIT: do 79.3 4 8.7E-05 24.2 3.5 17 43-59 18-34 (76)
419 KOG3783 Uncharacterized conser 79.1 16 0.00034 30.3 7.7 77 48-124 250-333 (546)
420 PF10952 DUF2753: Protein of u 78.8 12 0.00025 24.6 5.6 72 2-92 6-77 (140)
421 smart00299 CLH Clathrin heavy 78.6 16 0.00035 24.0 9.1 80 39-119 15-107 (140)
422 cd02679 MIT_spastin MIT: domai 78.5 5.1 0.00011 23.9 3.8 34 11-59 3-36 (79)
423 PF09797 NatB_MDM20: N-acetylt 77.6 19 0.00041 28.4 7.9 49 44-92 196-244 (365)
424 PF02184 HAT: HAT (Half-A-TPR) 77.2 6.7 0.00014 18.9 3.5 25 12-37 2-26 (32)
425 cd02679 MIT_spastin MIT: domai 77.1 6.4 0.00014 23.5 3.9 22 102-123 16-37 (79)
426 PF12739 TRAPPC-Trs85: ER-Golg 76.3 39 0.00085 27.3 13.6 28 1-28 212-239 (414)
427 cd02682 MIT_AAA_Arch MIT: doma 75.2 15 0.00031 21.8 5.1 16 50-65 32-47 (75)
428 COG3014 Uncharacterized protei 75.1 39 0.00084 26.6 10.2 42 16-57 40-84 (449)
429 PF07219 HemY_N: HemY protein 74.7 15 0.00033 23.2 5.5 46 34-79 62-107 (108)
430 PF13226 DUF4034: Domain of un 73.1 38 0.00083 25.7 8.1 67 16-82 62-150 (277)
431 COG5187 RPN7 26S proteasome re 73.1 40 0.00087 25.9 10.6 94 31-124 115-222 (412)
432 PF13812 PPR_3: Pentatricopept 73.0 8.2 0.00018 17.9 4.1 27 96-122 3-29 (34)
433 PF02064 MAS20: MAS20 protein 72.5 9.6 0.00021 24.9 4.2 29 36-64 68-96 (121)
434 PF04212 MIT: MIT (microtubule 72.5 7.6 0.00016 22.2 3.4 13 14-26 3-15 (69)
435 KOG1463 26S proteasome regulat 72.3 15 0.00033 28.7 5.7 90 36-125 133-240 (411)
436 PF11846 DUF3366: Domain of un 71.6 20 0.00044 25.3 6.1 44 83-126 129-176 (193)
437 cd02684 MIT_2 MIT: domain cont 71.5 10 0.00023 22.3 3.9 32 13-59 3-34 (75)
438 KOG2561 Adaptor protein NUB1, 70.2 29 0.00062 28.2 6.9 43 4-46 170-223 (568)
439 KOG2114 Vacuolar assembly/sort 69.4 32 0.0007 30.3 7.5 54 38-92 341-395 (933)
440 PF04212 MIT: MIT (microtubule 69.3 16 0.00035 20.8 4.4 19 71-89 11-29 (69)
441 PF12753 Nro1: Nuclear pore co 69.2 15 0.00032 29.2 5.2 44 47-92 334-389 (404)
442 cd02677 MIT_SNX15 MIT: domain 68.9 8.7 0.00019 22.6 3.1 15 45-59 20-34 (75)
443 PF00244 14-3-3: 14-3-3 protei 68.6 45 0.00097 24.6 12.8 27 3-29 7-33 (236)
444 PF06957 COPI_C: Coatomer (COP 68.3 34 0.00073 27.7 7.1 91 36-126 209-332 (422)
445 KOG1920 IkappaB kinase complex 67.1 32 0.00069 31.5 7.2 107 10-122 893-1027(1265)
446 smart00777 Mad3_BUB1_I Mad3/BU 67.0 33 0.00072 22.5 8.0 49 65-119 69-124 (125)
447 smart00671 SEL1 Sel1-like repe 67.0 12 0.00027 17.6 3.9 27 33-59 3-33 (36)
448 PF12583 TPPII_N: Tripeptidyl 66.6 25 0.00054 23.3 5.0 37 103-142 85-121 (139)
449 TIGR02710 CRISPR-associated pr 66.5 65 0.0014 25.7 12.9 54 3-56 136-196 (380)
450 PF12753 Nro1: Nuclear pore co 66.5 13 0.00029 29.5 4.5 45 79-123 332-391 (404)
451 KOG1538 Uncharacterized conser 66.1 16 0.00034 31.2 5.1 19 74-92 826-844 (1081)
452 COG4941 Predicted RNA polymera 65.9 55 0.0012 25.7 7.5 118 8-126 267-397 (415)
453 KOG1463 26S proteasome regulat 65.7 65 0.0014 25.4 11.1 49 5-53 12-70 (411)
454 PRK15490 Vi polysaccharide bio 64.2 60 0.0013 27.5 8.0 78 12-91 23-100 (578)
455 KOG4563 Cell cycle-regulated h 63.8 18 0.00039 28.5 4.7 52 3-54 47-106 (400)
456 PRK11619 lytic murein transgly 63.3 1E+02 0.0022 26.7 13.4 113 7-120 322-465 (644)
457 TIGR02996 rpt_mate_G_obs repea 62.6 20 0.00044 18.5 4.2 32 19-50 4-35 (42)
458 PF04190 DUF410: Protein of un 61.3 67 0.0015 24.1 13.2 25 30-54 89-113 (260)
459 PF01239 PPTA: Protein prenylt 61.2 16 0.00035 16.9 4.5 25 17-41 3-27 (31)
460 KOG4151 Myosin assembly protei 61.0 61 0.0013 28.3 7.6 104 38-141 60-174 (748)
461 COG5159 RPN6 26S proteasome re 60.8 75 0.0016 24.5 8.4 91 36-126 130-238 (421)
462 PF08238 Sel1: Sel1 repeat; I 59.9 19 0.00041 17.3 3.9 14 46-59 23-36 (39)
463 COG5187 RPN7 26S proteasome re 59.6 80 0.0017 24.4 11.6 83 44-126 88-187 (412)
464 PF00637 Clathrin: Region in C 59.4 0.23 5.1E-06 33.1 -5.5 49 8-56 18-67 (143)
465 PF12583 TPPII_N: Tripeptidyl 59.0 33 0.00071 22.8 4.6 34 43-76 88-121 (139)
466 PF07219 HemY_N: HemY protein 58.9 44 0.00094 21.1 6.6 24 69-92 63-86 (108)
467 COG4455 ImpE Protein of avirul 58.5 72 0.0016 23.5 7.4 53 40-92 10-62 (273)
468 PF05053 Menin: Menin; InterP 57.9 1.2E+02 0.0025 25.8 8.8 63 30-92 276-345 (618)
469 PF04840 Vps16_C: Vps16, C-ter 57.4 90 0.0019 24.3 11.1 98 9-118 189-286 (319)
470 KOG0529 Protein geranylgeranyl 57.0 1E+02 0.0022 24.9 13.1 126 14-139 46-194 (421)
471 COG3014 Uncharacterized protei 56.8 91 0.002 24.7 7.3 74 50-123 40-154 (449)
472 PF15297 CKAP2_C: Cytoskeleton 56.6 88 0.0019 24.6 7.3 62 48-109 120-190 (353)
473 KOG1497 COP9 signalosome, subu 56.6 75 0.0016 24.8 6.7 55 66-120 104-170 (399)
474 PF10037 MRP-S27: Mitochondria 56.2 83 0.0018 25.7 7.4 70 3-73 109-180 (429)
475 KOG4056 Translocase of outer m 56.1 34 0.00074 22.8 4.3 31 36-66 86-116 (143)
476 COG4941 Predicted RNA polymera 56.0 1E+02 0.0022 24.4 11.1 80 12-92 311-392 (415)
477 PF14689 SPOB_a: Sensor_kinase 55.6 36 0.00077 19.1 4.0 25 34-58 26-50 (62)
478 PF11349 DUF3151: Protein of u 55.0 57 0.0012 21.3 7.1 34 93-126 91-124 (129)
479 PF08311 Mad3_BUB1_I: Mad3/BUB 55.0 57 0.0012 21.3 12.0 71 45-121 40-126 (126)
480 PF08626 TRAPPC9-Trs120: Trans 54.6 1.9E+02 0.0041 27.2 13.2 77 47-123 361-474 (1185)
481 KOG4563 Cell cycle-regulated h 54.5 42 0.00092 26.5 5.3 27 34-60 44-70 (400)
482 KOG2066 Vacuolar assembly/sort 54.2 1.6E+02 0.0034 26.1 9.0 52 7-58 366-419 (846)
483 COG1747 Uncharacterized N-term 53.7 1.4E+02 0.0029 25.2 10.7 93 28-123 63-160 (711)
484 PF02064 MAS20: MAS20 protein 53.2 62 0.0013 21.2 6.0 30 97-126 66-95 (121)
485 KOG0890 Protein kinase of the 53.1 2.2E+02 0.0048 28.8 10.3 78 47-124 1645-1732(2382)
486 PF14858 DUF4486: Domain of un 52.7 1.3E+02 0.0028 25.3 8.0 55 68-122 154-225 (542)
487 KOG4151 Myosin assembly protei 52.4 36 0.00077 29.6 5.0 86 4-89 60-151 (748)
488 KOG1811 Predicted Zn2+-binding 52.4 1.5E+02 0.0033 25.5 10.7 57 70-126 561-619 (1141)
489 KOG3677 RNA polymerase I-assoc 52.4 1.3E+02 0.0028 24.6 7.8 89 34-126 238-339 (525)
490 PRK11619 lytic murein transgly 52.2 1.6E+02 0.0034 25.6 14.3 114 8-122 252-374 (644)
491 COG2015 Alkyl sulfatase and re 52.0 33 0.00071 28.3 4.5 53 32-84 453-505 (655)
492 cd02656 MIT MIT: domain contai 51.2 30 0.00066 20.1 3.4 14 14-27 4-17 (75)
493 cd02678 MIT_VPS4 MIT: domain c 51.0 30 0.00066 20.2 3.4 15 13-27 3-17 (75)
494 PF10938 YfdX: YfdX protein; 50.9 78 0.0017 21.6 10.7 56 67-122 77-145 (155)
495 PF05470 eIF-3c_N: Eukaryotic 50.6 1.3E+02 0.0028 25.8 8.0 47 77-123 468-529 (595)
496 smart00745 MIT Microtubule Int 50.5 49 0.0011 19.2 4.2 16 106-121 20-35 (77)
497 PF14852 Fis1_TPR_N: Fis1 N-te 50.3 31 0.00068 16.9 3.9 31 95-125 2-35 (35)
498 TIGR00985 3a0801s04tom mitocho 49.8 42 0.00092 22.8 4.2 29 36-64 95-124 (148)
499 COG5536 BET4 Protein prenyltra 48.2 1.2E+02 0.0027 23.2 8.1 127 13-139 90-238 (328)
500 KOG2063 Vacuolar assembly/sort 47.3 2.2E+02 0.0048 25.8 9.5 92 1-92 508-618 (877)
No 1
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.87 E-value=1.6e-20 Score=130.83 Aligned_cols=129 Identities=24% Similarity=0.285 Sum_probs=123.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.||..|+..|++..|.+-++++++.+|++..+|..++.+|.+.|+.+.|.+.|++++.++|+++++++|.|..++.+|++
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 040667 82 KEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRID 130 (207)
Q Consensus 82 ~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 130 (207)
++|...|++++ ....|.++|.|..+.|+++.|..+|+++++++|+.+..
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~ 175 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPA 175 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChH
Confidence 99999999999 77899999999999999999999999999999984433
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.84 E-value=2.3e-20 Score=146.20 Aligned_cols=145 Identities=21% Similarity=0.281 Sum_probs=123.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
|+|.+|+.+|..+-|+.+|+++++..|+.++++.++|..+-..|+..+|...|++++.+.|+++++.+++|.+|..+|.+
T Consensus 291 Nla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~ 370 (966)
T KOG4626|consen 291 NLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKI 370 (966)
T ss_pred ceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccc
Confidence 56778888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhcccc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~ 146 (207)
++|...|.+++ ...+..++|.+|.++|++++|+.+|++++++.|. ...+.+..+..+++..++++
T Consensus 371 e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 371 EEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred hHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHH
Confidence 99999999988 6678899999999999999999999999999997 34555666666666555553
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=6.3e-20 Score=143.75 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=100.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
|||.+|-..+.|++|+.+|.+|+...|++..++-++|.+|+..|..+-|+..|+++++++|.++.+++++|.++...|+.
T Consensus 257 NLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 257 NLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred hHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence 34444445555555555555555555555555555555556666667777777777777777778888888888888888
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhccc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGRT 145 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~ 145 (207)
.+|..+|.+++ .+.+.+++|.++.++|.+++|...|.++++..|. .+.+++.++...+++.+++
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 88888888887 7778888888888888888888888888888887 5566777776666666665
No 4
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.77 E-value=2.7e-17 Score=135.81 Aligned_cols=144 Identities=13% Similarity=0.111 Sum_probs=121.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+..|++++..+|++..++..+|.++...|++++|+..|++++..+|+++.+++.+|.++...|++
T Consensus 336 ~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~ 415 (615)
T TIGR00990 336 LRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEF 415 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 46778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhccc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGRT 145 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~ 145 (207)
++|+..|++++ +..++..+|.++...|++++|+..|.++++..|+.. ...+.+....+.+.+++
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence 99999999998 677888999999999999999999999999888733 23344444444444443
No 5
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.77 E-value=3.9e-17 Score=110.30 Aligned_cols=118 Identities=19% Similarity=0.139 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---
Q 040667 16 SKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL--- 92 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 92 (207)
-..+|++++..+|++ +..+|.++...|++++|+..|++++.++|.+..+|..+|.++...|++++|+..|++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 346889999999875 56789999999999999999999999999999999999999999999999999999999
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHH
Q 040667 93 --YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLER 136 (207)
Q Consensus 93 --~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~ 136 (207)
+..+++++|.++...|++++|+..|.+++++.|+++........
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 88999999999999999999999999999999985544444333
No 6
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=1.5e-16 Score=120.00 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=81.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+..|++++..+|+++.+|+.+|.++...|++++|+..|+++++++|++..+|.++|.++...|++
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 36778888999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|++.|++++
T Consensus 149 ~eA~~~~~~al 159 (296)
T PRK11189 149 ELAQDDLLAFY 159 (296)
T ss_pred HHHHHHHHHHH
Confidence 88888777766
No 7
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.76 E-value=5.8e-18 Score=133.34 Aligned_cols=142 Identities=14% Similarity=0.222 Sum_probs=106.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|++|..+++++.|+++|++|+.++|++..+|..+|.-+....+++.|...|++|+..+|.+-.+|+.+|.+|.++++++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e 506 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLE 506 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhh
Confidence 56777777788888888888888888877777778887777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhcc
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGR 144 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~ 144 (207)
.|.-.|++|+ +..+...+|.++.+.|+.++|+..+++|+.++|.++ ...+.+....+.+.++
T Consensus 507 ~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~ea 576 (638)
T KOG1126|consen 507 FAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEA 576 (638)
T ss_pred HHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHH
Confidence 8888888887 666777778888888888888888888888777633 2333334444444444
No 8
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.75 E-value=1.8e-16 Score=112.45 Aligned_cols=125 Identities=20% Similarity=0.210 Sum_probs=114.2
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHhcC--HHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLH-MIKKK--SKEAFI 86 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~ 86 (207)
.++.++++..+++++..+|+++.+|..+|.++...|++++|+..|++++.++|+++.++..+|.++ ...|+ +++|..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 456788999999999999999999999999999999999999999999999999999999999975 67787 599999
Q ss_pred HHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHH
Q 040667 87 AFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELL 134 (207)
Q Consensus 87 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 134 (207)
.+++++ +..+++.+|.+++..|++++|+.+|+++++..|.+......+
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 999999 889999999999999999999999999999998744333333
No 9
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=6e-18 Score=133.25 Aligned_cols=144 Identities=19% Similarity=0.303 Sum_probs=127.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHH----------------------------------hCCCChHHHHHHHHHHHHccCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMA----------------------------------LSSLYPDGWFALGAAALKARDV 47 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~----------------------------------~~p~~~~~~~~l~~~~~~~~~~ 47 (207)
.+|..||+.++|++|..+|+.+-+ .+|+.|..|..+|.||..++++
T Consensus 358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh 437 (638)
T KOG1126|consen 358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH 437 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence 479999999999999999998855 2577888999999999999999
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 48 EKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+.|++.|+++++++|.+..+|..+|.-+....+++.|+.+|++++ +..+|+.+|.+|.+.++++.|.-.|++|++
T Consensus 438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999 899999999999999999999999999999
Q ss_pred cCCCcc---ccHHHHHHHHHHHhccc
Q 040667 123 MTNNKR---IDTELLERIVLDLEGRT 145 (207)
Q Consensus 123 ~~p~~~---~~~~~~~~~~~~~~~~~ 145 (207)
++|.+. ...+..+...+..++++
T Consensus 518 INP~nsvi~~~~g~~~~~~k~~d~AL 543 (638)
T KOG1126|consen 518 INPSNSVILCHIGRIQHQLKRKDKAL 543 (638)
T ss_pred CCccchhHHhhhhHHHHHhhhhhHHH
Confidence 999833 33344444444444444
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=1.7e-16 Score=131.13 Aligned_cols=125 Identities=14% Similarity=0.248 Sum_probs=121.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+..|++++..+|+++.+++.+|.+++..|++++|+..|++++.++|++..++..+|.++..+|++
T Consensus 370 ~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~ 449 (615)
T TIGR00990 370 KRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSI 449 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..|++++ +..++..+|.++...|++++|+..|.+++++.|+
T Consensus 450 ~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~ 499 (615)
T TIGR00990 450 ASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKE 499 (615)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCc
Confidence 99999999999 7889999999999999999999999999999986
No 11
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.75 E-value=2e-16 Score=114.71 Aligned_cols=126 Identities=25% Similarity=0.319 Sum_probs=120.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|..++..|++++|+..+++++..+|++..++..+|.++...|++++|+..+++++...|.+..++.++|.++...|++
T Consensus 36 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 115 (234)
T TIGR02521 36 QLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY 115 (234)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++|+..|++++ ....+..+|.++...|++++|...+.++++.+|+.
T Consensus 116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 168 (234)
T TIGR02521 116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR 168 (234)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 99999999998 35678999999999999999999999999999873
No 12
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=9.8e-17 Score=122.03 Aligned_cols=122 Identities=20% Similarity=0.359 Sum_probs=76.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|+.|...++.++|+.+|++++.++|....+|..+|.-|..+++...|+..|++|++++|.+-.+|+.+|.+|...+-+-
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~ 415 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF 415 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence 45555555666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
=|+-+|++++ +..+|..+|.||.+.++.++|+++|.+++...
T Consensus 416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~ 462 (559)
T KOG1155|consen 416 YALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG 462 (559)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence 6666666666 55666666666666666666666666666554
No 13
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.6e-16 Score=120.94 Aligned_cols=122 Identities=14% Similarity=0.198 Sum_probs=118.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..|+.++|-..|+..|+.|++++|.+..+|+.+|..|.-++-+.-|+-+|++|....|.++..|..||.||.++++.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~ 449 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLE 449 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+|+++|.+++ +..++..+|.+|.+.++.++|..+|.+.++..
T Consensus 450 eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 450 EAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 9999999999 56899999999999999999999999998854
No 14
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.73 E-value=2e-16 Score=106.82 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=99.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
++|..+...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|++++.++|+++.+++++|.++...|++
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 36888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDV 107 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~ 107 (207)
++|+..|++++ +...+.+++.+....
T Consensus 109 ~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 109 GLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999 777777777766543
No 15
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.72 E-value=9.1e-16 Score=102.72 Aligned_cols=120 Identities=22% Similarity=0.245 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----
Q 040667 18 ILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----- 92 (207)
Q Consensus 18 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----- 92 (207)
..+++++..+|++....+.+|.++...|++++|...+++++..+|.++.+|..+|.++...|++++|...|++++
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 468899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHH
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERI 137 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 137 (207)
+...++.+|.++...|++++|+..++++++++|++.........+
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 788999999999999999999999999999999754444444433
No 16
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.69 E-value=3.6e-15 Score=127.11 Aligned_cols=119 Identities=13% Similarity=0.141 Sum_probs=114.5
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
....|++++|+.+|++++..+|+ +.++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|+.
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34459999999999999999996 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 87 AFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 87 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.|++++ +..+++++|.++...|++++|+.+|+++++++|+
T Consensus 665 ~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~ 709 (987)
T PRK09782 665 MLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN 709 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999 8899999999999999999999999999999997
No 17
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=7e-15 Score=119.90 Aligned_cols=115 Identities=14% Similarity=-0.004 Sum_probs=79.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
.+++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..++
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~ 396 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN 396 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 34567777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 90 EAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 90 ~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+++ +...+..++.++...|++++|+..++++++..
T Consensus 397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 776 33334444555666677777777777776654
No 18
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=1e-14 Score=120.92 Aligned_cols=124 Identities=15% Similarity=0.079 Sum_probs=61.3
Q ss_pred hHHHHHhcCCHHH----HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYET----SKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 3 la~~~~~~~~~~~----A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
+|..+...|++++ |+..|++++..+|+++.++..+|.++...|++++|+..+++++.++|+++.++..+|.++...
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~ 331 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQV 331 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 3444444454443 445555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 79 KKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 79 ~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|++++|+..|++++ ....+..+|.++...|++++|+..|+++++.+|+
T Consensus 332 G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 332 GQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 55555555555444 2222333444455555555555555555555544
No 19
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.66 E-value=1.1e-14 Score=120.01 Aligned_cols=126 Identities=10% Similarity=0.034 Sum_probs=122.2
Q ss_pred CchHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 1 RSLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 1 r~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
|+||.+....|.+++|..+++.+++..|++..++..++.++.+.+++++|+..+++++..+|++..+++.+|.++..+|+
T Consensus 90 ~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 90 VLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++|+..|++++ +..++..+|.++...|+.++|...|+++++....
T Consensus 170 ~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 170 SEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 999999999999 6899999999999999999999999999998765
No 20
>PRK12370 invasion protein regulator; Provisional
Probab=99.66 E-value=4.1e-15 Score=121.23 Aligned_cols=125 Identities=17% Similarity=0.075 Sum_probs=116.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.++...|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+..+++++.++|.++..+..++.+++..|++
T Consensus 343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 343 LLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 46788899999999999999999999999999999999999999999999999999999999988877778788889999
Q ss_pred HHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++|+..+++++ +...+..+|.++...|++++|...+.++....|.
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~ 473 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT 473 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch
Confidence 99999999987 4667899999999999999999999998887776
No 21
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.66 E-value=3.7e-14 Score=102.73 Aligned_cols=125 Identities=16% Similarity=0.097 Sum_probs=116.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC--CCCHHHHHHHHHHHHHhc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD--PDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~ 79 (207)
.+|..+...|++++|+..+++++...|.+..++..+|.++...|++++|+..+++++... |.....+..+|.++...|
T Consensus 70 ~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 149 (234)
T TIGR02521 70 ALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAG 149 (234)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcC
Confidence 468899999999999999999999999999999999999999999999999999999854 456778999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++++|...|.+++ +...+..+|.++...|++++|...++++++..|.
T Consensus 150 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 201 (234)
T TIGR02521 150 DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ 201 (234)
T ss_pred CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999 5778999999999999999999999999998765
No 22
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.3e-15 Score=109.21 Aligned_cols=89 Identities=21% Similarity=0.259 Sum_probs=50.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
|..+...++|.+|+..|.+||.++|+++..|.+++.+|.++|.++.|++.+++++.++|.++.+|..||.+|..+|++.+
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 44455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh
Q 040667 84 AFIAFKEAL 92 (207)
Q Consensus 84 A~~~~~~~~ 92 (207)
|++.|++++
T Consensus 168 A~~aykKaL 176 (304)
T KOG0553|consen 168 AIEAYKKAL 176 (304)
T ss_pred HHHHHHhhh
Confidence 555555555
No 23
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.65 E-value=4.8e-15 Score=99.00 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=60.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++++|...|+-+...+|.+...|++||.|+..+|+|++|+..|.+++.++|+++..+.++|.|+...|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 45556666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
.|.+.|+.++
T Consensus 121 ~A~~aF~~Ai 130 (157)
T PRK15363 121 YAIKALKAVV 130 (157)
T ss_pred HHHHHHHHHH
Confidence 6666666555
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.65 E-value=9.6e-15 Score=121.07 Aligned_cols=125 Identities=16% Similarity=0.105 Sum_probs=118.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH----HHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEK----ALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~----A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
++..+...|++++|+..|++++..+|+++.++..+|.++...|++++ |+..|++++.++|+++.++..+|.++...
T Consensus 218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~ 297 (656)
T PRK15174 218 AVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRT 297 (656)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 46678889999999999999999999999999999999999999986 89999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 79 KKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 79 ~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
|++++|+..+++++ +..++..+|.++...|++++|+..|.++++.+|+.
T Consensus 298 g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 298 GQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 99999999999999 77889999999999999999999999999999974
No 25
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=3.9e-14 Score=108.78 Aligned_cols=124 Identities=19% Similarity=0.313 Sum_probs=100.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..|....+.++-...|.+|.+++|.+++.|+.+|.+++-++++++|+.-|+++++++|.+.-.+..++.+.+++++++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIA 445 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHH
Confidence 46667777777888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++..|+.++ .+.++...|.++..++++++|++.|.+++++.|.
T Consensus 446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 8888888887 6677777888888888888888888888888776
No 26
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.63 E-value=6.8e-14 Score=102.36 Aligned_cols=129 Identities=20% Similarity=0.226 Sum_probs=113.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH---HHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE---AWNNIACLH 75 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~---~~~~l~~~~ 75 (207)
.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|+++. +++.+|.++
T Consensus 38 ~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~ 117 (235)
T TIGR03302 38 EEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSN 117 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHH
Confidence 468889999999999999999999999876 57899999999999999999999999999998776 789999999
Q ss_pred HHh--------cCHHHHHHHHHHHh-----cHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 76 MIK--------KKSKEAFIAFKEAL-----YWQ-----------------LWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 76 ~~~--------~~~~~A~~~~~~~~-----~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
... |++++|++.|++++ +.. ....+|.++...|++.+|+..+.++++..|
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 197 (235)
T TIGR03302 118 YNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP 197 (235)
T ss_pred HHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC
Confidence 886 88999999999998 111 124678899999999999999999999988
Q ss_pred Ccccc
Q 040667 126 NKRID 130 (207)
Q Consensus 126 ~~~~~ 130 (207)
+.+..
T Consensus 198 ~~~~~ 202 (235)
T TIGR03302 198 DTPAT 202 (235)
T ss_pred CCcch
Confidence 75433
No 27
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.61 E-value=2.3e-14 Score=111.80 Aligned_cols=144 Identities=17% Similarity=0.265 Sum_probs=115.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-----------------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG----------------- 65 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------- 65 (207)
.|..+++.|+..+|.-+|+.++..+|.+.++|..||.+....++=..|+..+++|++++|++-
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 578889999999999999999999999999999999999999999999999999999988876
Q ss_pred ------------------------------------------------------------HHHHHHHHHHHHhcCHHHHH
Q 040667 66 ------------------------------------------------------------EAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 66 ------------------------------------------------------------~~~~~l~~~~~~~~~~~~A~ 85 (207)
++...||.+|...|+|+.|+
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 34455566666677777777
Q ss_pred HHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhcccc
Q 040667 86 IAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 86 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~ 146 (207)
.+|+.++ +..+|..+|-.+..-.+.++|+..|++|+++.|+ ..+++++-..-++.|+++++
T Consensus 451 Dcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 451 DCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 7777777 7777888887777777788888888888888877 44566666666666666643
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.60 E-value=4.3e-14 Score=120.66 Aligned_cols=142 Identities=16% Similarity=0.130 Sum_probs=123.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..+...|++++|+.+|++++..+|.....+..++......|++++|+..|+++++++|+ +.++.++|.++.+.|+++
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~d 626 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVP 626 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHH
Confidence 5677888999999999999999999888877777777777789999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhccc
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGRT 145 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~ 145 (207)
+|+..|++++ +..++.++|.++...|++++|+..|.++++++|++. .+++......+.++++.
T Consensus 627 eA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~ 697 (987)
T PRK09782 627 AAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ 697 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999 888999999999999999999999999999999843 44455555545444443
No 29
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.60 E-value=6.7e-14 Score=105.68 Aligned_cols=119 Identities=17% Similarity=0.097 Sum_probs=109.4
Q ss_pred cCCHHHHHHHHHHHHHhCC---C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 10 RGGYETSKILWEAAMALSS---L-YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
.+..+.++..+.+++...| . .+..|+.+|.++...|++++|+..|+++++++|+++.+|+.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566889999999997544 2 36779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 86 IAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 86 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
..|++++ +..++.++|.++...|++++|+..++++++++|+++
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999 778999999999999999999999999999999854
No 30
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.60 E-value=2.6e-14 Score=103.80 Aligned_cols=110 Identities=23% Similarity=0.283 Sum_probs=95.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcC
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVG 108 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~ 108 (207)
+..=|.-+++.++|++|+..|.+||.++|.++..|.+.+.+|.++|.++.|++.++.++ ...+|..+|.+|..+|
T Consensus 84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 34557888999999999999999999999999999999999999999999999999999 7889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhc
Q 040667 109 NIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEG 143 (207)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 143 (207)
++++|+..|+++|+++|++......+...-..+.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 99999999999999999755444444443333333
No 31
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.59 E-value=7.9e-14 Score=122.40 Aligned_cols=126 Identities=17% Similarity=0.107 Sum_probs=115.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH--------------HH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE--------------AW 68 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~--------------~~ 68 (207)
+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|++.. ..
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 4788899999999999999999999999999999999999999999999999999999997642 12
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
..+|.++...|++++|+..|++++ +..++..+|.++...|++++|+.+|+++++++|++.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~ 419 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT 419 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 345888999999999999999999 778899999999999999999999999999999843
No 32
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=6.4e-14 Score=109.14 Aligned_cols=138 Identities=19% Similarity=0.201 Sum_probs=122.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC-------CCHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDP-------DNGEAWNNIACLH 75 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-------~~~~~~~~l~~~~ 75 (207)
+|..|...+++.-|..+|.+|+.+.|.++..+..+|.+.+..+.|.+|..+|++++...+ .....+.++|.++
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 577888899999999999999999999999999999999999999999999999984322 2345689999999
Q ss_pred HHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 040667 76 MIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
.+++.+.+|+..|++++ ++.++..+|.+|..+|+++.|+..|.++|-+.|++......+...++.
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 99999999999999999 899999999999999999999999999999999866666666655555
No 33
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.2e-14 Score=110.15 Aligned_cols=145 Identities=15% Similarity=0.276 Sum_probs=121.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH----------------------------------HHccCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAA----------------------------------LKARDV 47 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----------------------------------~~~~~~ 47 (207)
..|..|+..|++.+|..+|.++..++|....+|...|..+ .+++.+
T Consensus 317 aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 317 AVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred hHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 3577778888888888888888888888888887777766 445556
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 48 EKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
+-|..+|.+|+.+.|.++-+...+|.+.+..+.|.+|..+|++++ ....+.++|.++.+++.+++|+.
T Consensus 397 kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 397 KLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 666777777778889999999999999999999999999999998 33458999999999999999999
Q ss_pred HHHHHHhcCCC---ccccHHHHHHHHHHHhcccc
Q 040667 116 AVQMVLNMTNN---KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 116 ~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~ 146 (207)
++++++.+.|. .+...+.++.+.++++.|+.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 99999999987 45667777888888877764
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.57 E-value=2.6e-13 Score=99.31 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=110.5
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHccCCCCHHHH--
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPD---GWFALGAAALKA--------RDVEKALDGFTRAVQLDPDNGEAW-- 68 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~~~~-- 68 (207)
.+|.+++..|++++|+..|+++++.+|+++. +++.+|.++... |++++|+..|++++...|++..++
T Consensus 75 ~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a 154 (235)
T TIGR03302 75 DLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDA 154 (235)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHH
Confidence 4788999999999999999999999998776 688999999986 899999999999999999986443
Q ss_pred ---------------HHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 69 ---------------NNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 69 ---------------~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
..+|.++...|++.+|+..|++++ ...+++.+|.++...|++++|..+++.+....|
T Consensus 155 ~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 155 KKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 367888999999999999999998 357999999999999999999999887776655
No 35
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.56 E-value=1.9e-14 Score=108.04 Aligned_cols=126 Identities=28% Similarity=0.386 Sum_probs=105.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALS--SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
....+...++++++...++++.... |.++..|..+|.++.+.|++++|+..|++++.++|+++.++..++.++...|+
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~ 195 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGD 195 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC
Confidence 3456788999999999999977654 67888999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
++++.+.+.... +...|..+|.++...|++++|..+|+++++..|+++
T Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 196 YDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 998777766655 677889999999999999999999999999999743
No 36
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.56 E-value=3.3e-13 Score=90.28 Aligned_cols=119 Identities=13% Similarity=0.095 Sum_probs=102.2
Q ss_pred HhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHH
Q 040667 25 ALS-SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWE 98 (207)
Q Consensus 25 ~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~ 98 (207)
.+. ++.-+..+.+|..++..|++++|...|+-...++|.+...|++||.++..+|++.+|+..|.+++ ++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 345 66778889999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 99 NYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 99 ~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
+.|.|+...|+.+.|.+.|+.++...... .....+......+-++
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~-~~~~~l~~~A~~~L~~ 152 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRICGEV-SEHQILRQRAEKMLQQ 152 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhccC-hhHHHHHHHHHHHHHH
Confidence 99999999999999999999999987332 2333343333333333
No 37
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.56 E-value=1.7e-13 Score=117.06 Aligned_cols=123 Identities=22% Similarity=0.237 Sum_probs=77.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..+...|++++|+..+++++..+|++..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|+ +
T Consensus 742 l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~ 820 (899)
T TIGR02917 742 LHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-P 820 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-H
Confidence 445555556666666666666666666666666666666666666666666666666666666666666666666666 5
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..+++++ +...+..+|.++...|++++|..+++++++.+|.
T Consensus 821 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 821 RALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666666665 4555566666666666666666666666666664
No 38
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.56 E-value=2.7e-13 Score=106.23 Aligned_cols=125 Identities=15% Similarity=0.092 Sum_probs=85.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChH-----HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPD-----GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM 76 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 76 (207)
.++.++...|++++|+..+++++...|.... .+..+|.++...|++++|+..|+++++..|++..++..+|.++.
T Consensus 146 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 225 (389)
T PRK11788 146 QLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL 225 (389)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH
Confidence 3566677777777777777777776665422 34566777777777777777777777777777777777777777
Q ss_pred HhcCHHHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 77 IKKKSKEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|++++|++.|++++ ...++..++.++...|++++|...++++++..|+
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 7777777777777766 1234566677777777777777777777776665
No 39
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.56 E-value=1.8e-13 Score=107.28 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=101.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG-----EAWNNIACLHM 76 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~ 76 (207)
.+|..+...|++++|+..|.+++..+|.+..++..++.++...|++++|+..+++++...|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 3577788888888888888888888887788888888888888888888888888887776542 34667888888
Q ss_pred HhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 77 IKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|++++|+..|++++ ...++..+|.++...|++++|+..+.++++.+|.
T Consensus 192 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 246 (389)
T PRK11788 192 ARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE 246 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh
Confidence 8888888888888887 5667888888888888888888888888887775
No 40
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.55 E-value=2.3e-13 Score=105.02 Aligned_cols=106 Identities=15% Similarity=0.173 Sum_probs=98.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
..|..++..|+|++|+.+|++++..+|+++.++..+|.++..+|++++|+..+++++.++|.++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDV 107 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~ 107 (207)
++|+..|++++ +..+...++.|....
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999 677777777775554
No 41
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.55 E-value=1.2e-13 Score=110.35 Aligned_cols=126 Identities=37% Similarity=0.644 Sum_probs=118.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|...+..++|.++.++++..++++|-....|+.+|.+..++++++.|...|..++.++|++..+|+|++.+|.+.++-
T Consensus 490 ~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 490 SLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred hhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence 34555667899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
.+|...+.+++ ++.+|.|.-.+....|.+++|++.|.+.+.+....
T Consensus 570 ~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 570 KRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred HHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 99999999999 88999999999999999999999999998876553
No 42
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.55 E-value=5.5e-13 Score=117.17 Aligned_cols=125 Identities=18% Similarity=0.160 Sum_probs=108.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLH------- 75 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~------- 75 (207)
+|..+...|++++|+.+|++++..+|+++.++..+|.++...|++++|+..|++++.++|.+..++..++.++
T Consensus 357 ~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~ 436 (1157)
T PRK11447 357 QGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEK 436 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHH
Confidence 4677889999999999999999999999999999999999999999999999999999999987776665544
Q ss_pred -----------------------------------HHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 76 -----------------------------------MIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 76 -----------------------------------~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
...|++++|+..|++++ +..+++.+|.++...|++++|+.
T Consensus 437 A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 437 ALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 35678888888888888 66778888888888888888888
Q ss_pred HHHHHHhcCCCc
Q 040667 116 AVQMVLNMTNNK 127 (207)
Q Consensus 116 ~~~~al~~~p~~ 127 (207)
.++++++..|++
T Consensus 517 ~l~~al~~~P~~ 528 (1157)
T PRK11447 517 LMRRLAQQKPND 528 (1157)
T ss_pred HHHHHHHcCCCC
Confidence 888888888863
No 43
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.54 E-value=3.4e-13 Score=96.23 Aligned_cols=143 Identities=19% Similarity=0.181 Sum_probs=102.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
++..+...|+-+.+.....++...+|.+......+|...+..|+|.+|+..++++..+.|+++.+|..+|.+|.+.|+++
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChh
Confidence 45566667777777777777777777777777677777777788888888888877777777778888888888888888
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhccc
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGRT 145 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~ 145 (207)
+|...|.+++ ...+..++|..+.-.|+++.|..++.++....+.+. .++..+....+.+..+.
T Consensus 152 ~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~ 222 (257)
T COG5010 152 EARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE 222 (257)
T ss_pred HHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence 8877777777 667777777777777788777777777766555422 34444444445555443
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=2.3e-13 Score=102.15 Aligned_cols=121 Identities=21% Similarity=0.252 Sum_probs=81.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|.++...|++++|+.+|+++++.+|+++.+...++.++...|+++++...++......|.++..|..+|.++..+|+++
T Consensus 152 ~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 152 LAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 56777888888888888888888888888888888888888888888777777777777778888888888888888888
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+|+.+|++++ ++..+..+|.++...|+.++|..++.++++.
T Consensus 232 ~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 232 EALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8888888888 7778888888888888888888888877653
No 45
>PLN02789 farnesyltranstransferase
Probab=99.54 E-value=6.6e-13 Score=100.60 Aligned_cols=128 Identities=14% Similarity=0.114 Sum_probs=116.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH--H
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR-DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS--K 82 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~--~ 82 (207)
++...+.+++|+..+.+++.++|++..+|..+|.++..+| ++++++..+.+++..+|++..+|+..+.++...|+. +
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence 3456778999999999999999999999999999999998 689999999999999999999999999999999874 7
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHH
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTEL 133 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 133 (207)
+++..+.+++ +..+|...+.++...|++++++.++.++++.+|.+...+..
T Consensus 126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~ 181 (320)
T PLN02789 126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQ 181 (320)
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHH
Confidence 7899999999 89999999999999999999999999999999985444433
No 46
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.54 E-value=5.2e-14 Score=109.87 Aligned_cols=111 Identities=23% Similarity=0.343 Sum_probs=68.8
Q ss_pred HHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-
Q 040667 16 SKILWEAAMALSS--LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL- 92 (207)
Q Consensus 16 A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~- 92 (207)
-..+|-++....| .++++...||.+|...|+|++|+++|+.|+...|++...|+.||-.+....+..+|+..|++|+
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq 492 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ 492 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh
Confidence 3445555555555 4566666666666666666666666666666666666666666666666666666666666666
Q ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 ----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+++++++|.+++.+|.|++|.++|-.+|.+.+.
T Consensus 493 LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 493 LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 5556666666666666666666666666655543
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=1.4e-12 Score=106.44 Aligned_cols=124 Identities=23% Similarity=0.371 Sum_probs=119.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.|+..+..|++++|...+.++|..+|.++.+|+.||.+|.+.|+.+++...+-.|..++|.+...|..++....++|+++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 57788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|.-+|.+++ +.......+.+|.+.|++..|...|.+++...|.
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 9999999999 8888999999999999999999999999999993
No 48
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.53 E-value=6.1e-13 Score=113.68 Aligned_cols=124 Identities=17% Similarity=0.167 Sum_probs=109.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..+...|++++|+..|++++..+|+++.++..+|.++...|++++|+..+++++..+|.+..++..+|.++...|+++
T Consensus 131 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 210 (899)
T TIGR02917 131 RGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLSLGNIE 210 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCCHH
Confidence 67788888999999999999999999888889999999999999999999999999989988889999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..|++++ +..++..++.++...|++++|...+.++++..|+
T Consensus 211 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 259 (899)
T TIGR02917 211 LALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPN 259 (899)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999888 6778888888888888888888888888888776
No 49
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.53 E-value=3.2e-13 Score=90.36 Aligned_cols=91 Identities=24% Similarity=0.402 Sum_probs=88.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|..++++++..+|+++.++..+|.++...|++++|+..+++++..+|.++..++.+|.++...|++
T Consensus 22 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 22 ALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 46888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|+..|++++
T Consensus 102 ~~A~~~~~~al 112 (135)
T TIGR02552 102 ESALKALDLAI 112 (135)
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 50
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.1e-14 Score=105.47 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=119.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|+++..++++++|.++|+.+++.+|.+.++.-.+|..|+.-++.+-|+.+|++.+++.-.+++.+.++|.|++..++++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQID 375 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchh
Confidence 46677777777777777777777777777777777777777777777888888877777777889999999999999999
Q ss_pred HHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhcccc
Q 040667 83 EAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 83 ~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~ 146 (207)
-++..|++++ ...+|+++|.+....|++.-|..+|+-++..+|+ ...+++++....+.+.++.+
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars 450 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS 450 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence 9999999999 6789999999999999999999999999999987 44667777777777777754
No 51
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=2e-12 Score=90.79 Aligned_cols=124 Identities=15% Similarity=0.098 Sum_probs=114.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--DPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~ 80 (207)
+|..|...|+.+.|.+.|++|+.++|++.+++++.|..+...|++++|...|++++.. -|..+..|-|+|.|..+.|+
T Consensus 75 ~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 75 RAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred HHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCC
Confidence 6788899999999999999999999999999999999999999999999999999973 23456899999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++.|..+|++++ .......++..++..|++..|..++++.....+-
T Consensus 155 ~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~ 205 (250)
T COG3063 155 FDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA 205 (250)
T ss_pred chhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc
Confidence 999999999999 7778899999999999999999999988876653
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.3e-12 Score=100.61 Aligned_cols=147 Identities=15% Similarity=0.222 Sum_probs=128.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
|-.++-.|++-.|...|+++|.++|.+...|..+|.+|....+.++....|.++..++|.++++|+..|.+++-++++++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 45567889999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc----------cHHHHHHHHHHHhcccccc
Q 040667 84 AFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI----------DTELLERIVLDLEGRTSII 148 (207)
Q Consensus 84 A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~----------~~~~~~~~~~~~~~~~~~~ 148 (207)
|+..|++++ +...+..++.+.++.++++++...|+++.+..|+.+. +...+......|+.++.-.
T Consensus 413 A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 413 AIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999999999 7788999999999999999999999999999998332 3333444455566665433
Q ss_pred cc
Q 040667 149 ES 150 (207)
Q Consensus 149 ~~ 150 (207)
+.
T Consensus 493 ~~ 494 (606)
T KOG0547|consen 493 PR 494 (606)
T ss_pred cc
Confidence 33
No 53
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-12 Score=100.79 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=117.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC--------------------------ChHHHHHHHHHHHHccCHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL--------------------------YPDGWFALGAAALKARDVEKALDGFTR 56 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~--------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 56 (207)
+|..+...++++.|+.+|.+++....+ -...-..-|..+++.|+|..|+..|.+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 566788889999999999998875432 222234569999999999999999999
Q ss_pred HHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccH
Q 040667 57 AVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDT 131 (207)
Q Consensus 57 a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 131 (207)
++..+|+++..|.|.+.||.++|++..|+..+++++ ....|..-|.++..+.+|+.|.+.|.++++++|+.....
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~ 463 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAI 463 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 999999999999999999999999999999999999 778899999999999999999999999999999854444
Q ss_pred HHHHHHHHH
Q 040667 132 ELLERIVLD 140 (207)
Q Consensus 132 ~~~~~~~~~ 140 (207)
..+...+..
T Consensus 464 ~~~~rc~~a 472 (539)
T KOG0548|consen 464 DGYRRCVEA 472 (539)
T ss_pred HHHHHHHHH
Confidence 444444443
No 54
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.49 E-value=8.4e-13 Score=93.77 Aligned_cols=91 Identities=16% Similarity=0.217 Sum_probs=87.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHccC--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAA-LKARD--VEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
.+|..+...|++++|+..|++++..+|+++.++..+|.++ ...|+ +++|...+++++..+|+++.++..+|.+++..
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHc
Confidence 5789999999999999999999999999999999999985 67787 59999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHh
Q 040667 79 KKSKEAFIAFKEAL 92 (207)
Q Consensus 79 ~~~~~A~~~~~~~~ 92 (207)
|++++|+..|++++
T Consensus 158 g~~~~Ai~~~~~aL 171 (198)
T PRK10370 158 ADYAQAIELWQKVL 171 (198)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999998
No 55
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.6e-13 Score=111.42 Aligned_cols=121 Identities=13% Similarity=0.153 Sum_probs=114.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAF 88 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 88 (207)
..+.+++|+.+|.+++..+|.+..+-..+|.|+...|++.+|..+|.++.+-..++.++|.|+|.||..+|+|..|++.|
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999887788999999999999999999999999
Q ss_pred HHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 89 KEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 89 ~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
+.++ +..++..||.+++..|.+.+|...+..++.+.|.++.
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~ 751 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTS 751 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccch
Confidence 9999 8899999999999999999999999999999998554
No 56
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.2e-11 Score=90.39 Aligned_cols=133 Identities=21% Similarity=0.234 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC---HHHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK---SKEAFIAF 88 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~ 88 (207)
+.+.-+.-++.-+..+|++...|..||.+|+.+|+++.|...|.+++.+.|+++.++..+|.+++...+ ..++...+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 456677778888999999999999999999999999999999999999999999999999998887654 67899999
Q ss_pred HHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 89 KEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 89 ~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
++++ +..+.+.+|..++..|++.+|...|+..++..|.+......+...+......
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~~ 277 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALAQ 277 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhc
Confidence 9999 8999999999999999999999999999999998666666666555544444
No 57
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.47 E-value=5.5e-12 Score=90.13 Aligned_cols=117 Identities=17% Similarity=0.215 Sum_probs=110.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|...+..|+|..|+..++++....|++..+|..+|.+|.+.|++++|...|.+++++.|..+.+..|+|..++-.|+++
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~ 185 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLE 185 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHH
Confidence 57788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQM 119 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 119 (207)
.|..++..+. +..+..+++.+....|++++|.....+
T Consensus 186 ~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 186 DAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999999998 888999999999999999999877654
No 58
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.46 E-value=3.4e-13 Score=82.64 Aligned_cols=82 Identities=22% Similarity=0.330 Sum_probs=71.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSL--YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
..|+|++|+.++++++...|. +...++.+|.|+++.|+|++|+..+++ ...+|.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 456777899999999999999999999 88888888888889999999999999999
Q ss_pred HHHHH
Q 040667 87 AFKEA 91 (207)
Q Consensus 87 ~~~~~ 91 (207)
.|+++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99874
No 59
>PLN02789 farnesyltranstransferase
Probab=99.46 E-value=1.2e-11 Score=93.88 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=119.7
Q ss_pred hHHHHHhcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH--HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRG-GYETSKILWEAAMALSSLYPDGWFALGAAALKARDV--EKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
.|.++...| ++++++.++.+++..+|++..+|..++.++..+|+. ++++.+++++++.+|.+..+|..++.++...|
T Consensus 77 R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~ 156 (320)
T PLN02789 77 RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLG 156 (320)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhh
Confidence 355666677 689999999999999999999999999999999874 78899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDV---GNI----GQALEAVQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~---~~~----~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
+++++++.+.+++ +..+|+..+.+.... |.+ ++++.+..+++..+|++...+..+..+...
T Consensus 157 ~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 157 GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 9999999999999 888999999988776 333 578888999999999976666555555544
No 60
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.46 E-value=2.4e-12 Score=89.41 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=94.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhc
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLY--PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKK 79 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~ 79 (207)
.-++..++|..+...+...+..++.+ ..+++.+|.++...|++++|+..|++++.+.|+. +.++.++|.++...|
T Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 7 NDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 34455556777777776665555544 4567888888888899999999999888876653 457888889999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhcCCCccccHHHHHH
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVAL-------DVGNIG-------QALEAVQMVLNMTNNKRIDTELLER 136 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~-------~~~~~~-------~A~~~~~~al~~~p~~~~~~~~~~~ 136 (207)
++++|+..|++++ ....+.++|.++. ..|+++ +|...|.+++..+|...........
T Consensus 87 ~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 87 EHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 9999998888888 4555666666666 777766 6667777788888864434433333
No 61
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.45 E-value=1.5e-11 Score=83.22 Aligned_cols=115 Identities=19% Similarity=0.122 Sum_probs=102.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcC
Q 040667 7 AYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKK 80 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~ 80 (207)
....+++..+...+++.+..+|+. ..+.+.+|.+++..|++++|...|++++...|+. +.+...++.++...|+
T Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~ 100 (145)
T PF09976_consen 21 ALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQ 100 (145)
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC
Confidence 346789999999999999999988 4577889999999999999999999999987655 4578899999999999
Q ss_pred HHHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 81 SKEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 81 ~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
+++|+..++... ...++..+|.++...|++++|+..|++++
T Consensus 101 ~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 101 YDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999997755 66788899999999999999999999875
No 62
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.3e-11 Score=87.86 Aligned_cols=138 Identities=14% Similarity=0.056 Sum_probs=103.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
|..+...|+|++|+++|+..+..+|.+...+...-.+.-.+|+.-+|++.+...++..+.+.++|..++.+|...|+|.+
T Consensus 93 am~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 93 AMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHH
Confidence 44556677888888888888888888877777777777777888888888888888888888888888888888888888
Q ss_pred HHHHHHHHh-----cHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 040667 84 AFIAFKEAL-----YWQLWENYSHVALDVG---NIGQALEAVQMVLNMTNNKRIDTELLERIVLDL 141 (207)
Q Consensus 84 A~~~~~~~~-----~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 141 (207)
|.-++++++ ++..+..+|.+++-.| +++-|.++|.++++++|.+...+-.++.....+
T Consensus 173 A~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHH
Confidence 888888887 6666777777777666 456788888888888885444444444433333
No 63
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.8e-12 Score=106.57 Aligned_cols=62 Identities=34% Similarity=0.437 Sum_probs=53.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLY-PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
|.+.+..|+|..|+.+|++++.++|.. ++....+|.|++++++.+.|+..|.++++++|.++
T Consensus 171 A~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v 233 (1018)
T KOG2002|consen 171 ARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCV 233 (1018)
T ss_pred HHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhH
Confidence 566788899999999999999998865 46678889999999999999999999999988765
No 64
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.44 E-value=1.5e-11 Score=94.84 Aligned_cols=124 Identities=22% Similarity=0.233 Sum_probs=115.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.|..++..|.+++|+..++..+...|+++..+...+.+++..++..+|.+.+++++.++|+.+-.+.++|.++.+.|++.
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 46678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|+..++..+ ++..|..++..|...|+..++...+.+.+.+...
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~ 440 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGR 440 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCC
Confidence 9999999998 8889999999999999888888888877777654
No 65
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.44 E-value=6e-12 Score=97.25 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=96.3
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcC
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVG 108 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~ 108 (207)
+...|...+..|+|++|+..|++++.++|+++.++.++|.++..+|++++|+..+++++ +..+++.+|.++...|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 45678889999999999999999999999999999999999999999999999999999 8889999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 040667 109 NIGQALEAVQMVLNMTNNKRIDTELLERIVLDL 141 (207)
Q Consensus 109 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 141 (207)
++++|+..|+++++++|++......+..+...+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999998554444444444444
No 66
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.44 E-value=4.4e-12 Score=88.38 Aligned_cols=111 Identities=23% Similarity=0.223 Sum_probs=58.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..+++++...|.++..+..+|.++...|
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 120 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG 120 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence 3444444455555555555555443322 2344445555555555555555555555555555545555555554444
Q ss_pred CHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 80 KSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 80 ~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+...+...+..++ ..+++|.+++++++..+|++.
T Consensus 121 ~~~~a~~~~~~A~---------------~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 121 EKAEEAGDQDEAE---------------ALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ChHhHhhCHHHHH---------------HHHHHHHHHHHHHHhhCchhH
Confidence 4444333332221 126788999999999999753
No 67
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.2e-12 Score=99.29 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=105.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.-|..++..|+|.+|+.+|.++|..+|+++..|.++|.||.+++.+..|+...+++++++|++..+|..-|.++....+|
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQM 119 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 119 (207)
+.|++.|.+++ +..+.-.+..|...........+..++
T Consensus 443 dkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ee~~~r 485 (539)
T KOG0548|consen 443 DKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETPEETKRR 485 (539)
T ss_pred HHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCHHHHHHh
Confidence 99999999999 666777777777765444444444444
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.43 E-value=1.7e-11 Score=103.70 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=108.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
.+....|++++|+..+.++...+|....++..+|.++...|++++|+..|+++++++|.++.++..++.++...|++++|
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA 102 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEA 102 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 45677889999999999998888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+..+++++ +.. +..+|.++...|++++|+..++++++..|++
T Consensus 103 ~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~ 149 (765)
T PRK10049 103 LVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT 149 (765)
T ss_pred HHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99999988 666 8889999999999999999999999999973
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.43 E-value=1.9e-12 Score=102.66 Aligned_cols=144 Identities=16% Similarity=0.105 Sum_probs=121.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL--------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~ 65 (207)
.+|..|..+|+|++|+..++.+++. +|.-......+|.+|..++++.+|+..|++++.+ +|..+
T Consensus 204 ~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va 283 (508)
T KOG1840|consen 204 NLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVA 283 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 5889999999999999999999998 5655566667999999999999999999999976 34446
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN------ 126 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------ 126 (207)
.++.+|+.+|...|++.+|..++++++ -...+.+++.++...+++++|+.++++++++.-+
T Consensus 284 ~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~ 363 (508)
T KOG1840|consen 284 ATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDN 363 (508)
T ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccc
Confidence 789999999999999999999999999 4456888999999999999999999999986532
Q ss_pred -----ccccHHHHHHHHHHHhccc
Q 040667 127 -----KRIDTELLERIVLDLEGRT 145 (207)
Q Consensus 127 -----~~~~~~~~~~~~~~~~~~~ 145 (207)
...+++.++..++.+.++.
T Consensus 364 ~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 364 VNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred hHHHHHHHHHHHHHHHhcchhHHH
Confidence 2355666666666666654
No 70
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.43 E-value=6e-12 Score=106.42 Aligned_cols=122 Identities=20% Similarity=0.139 Sum_probs=115.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..+...|++++|+.+|++++..+|.++.++..++.++...|++++|+..+++++...|+++. +..+|.++...|++
T Consensus 54 ~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~ 132 (765)
T PRK10049 54 AVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRH 132 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCH
Confidence 57888999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
++|+..+++++ +..++..++.++...+..++|+..++++.. .|
T Consensus 133 ~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p 180 (765)
T PRK10049 133 WDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TP 180 (765)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CH
Confidence 99999999999 788888999999999999999999987665 44
No 71
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.40 E-value=9.6e-12 Score=77.05 Aligned_cols=90 Identities=31% Similarity=0.486 Sum_probs=58.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|..++..|++++|+..+++++...|.+..++..+|.++...+++++|+..+++++...|.+..++..+|.++...|++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 35566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 040667 82 KEAFIAFKEA 91 (207)
Q Consensus 82 ~~A~~~~~~~ 91 (207)
++|...+.++
T Consensus 85 ~~a~~~~~~~ 94 (100)
T cd00189 85 EEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHH
Confidence 6665555544
No 72
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.39 E-value=1.9e-11 Score=79.67 Aligned_cols=94 Identities=17% Similarity=0.160 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYS 101 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~ 101 (207)
.++.+|..+...|++++|+..|.+++...|++ ..+++.+|.++...|++++|+..|++++ ...++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445555555555555555555555544443 2344555555555555555555555544 133455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 102 HVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++...|++++|..++.++++..|+
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~ 108 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPG 108 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcC
Confidence 6666666666666666666666665
No 73
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.39 E-value=1.1e-11 Score=91.99 Aligned_cols=90 Identities=19% Similarity=0.216 Sum_probs=85.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..++..|++..|+..|..|++.+|++..+++..|.+|..+|+..-|+.-+.+++++.|+...+....|.++.++|+++
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHH
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|...|+..+
T Consensus 124 ~A~~DF~~vl 133 (504)
T KOG0624|consen 124 QAEADFDQVL 133 (504)
T ss_pred HHHHHHHHHH
Confidence 9999998887
No 74
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.38 E-value=1.5e-12 Score=75.73 Aligned_cols=64 Identities=33% Similarity=0.638 Sum_probs=58.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
.+|..++..|+|++|+..|++++..+|+++.+++.+|.++...|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4688999999999999999999999999999999999999999999999999999999999875
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.38 E-value=6.5e-12 Score=99.67 Aligned_cols=145 Identities=17% Similarity=0.162 Sum_probs=122.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-----C---CCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALS--------SLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-----P---DNG 65 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p---~~~ 65 (207)
+||..|...|+|++|..++++|+++. |.-...+..++.++...+++++|+.++++++++. + .-+
T Consensus 288 nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a 367 (508)
T KOG1840|consen 288 NLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLA 367 (508)
T ss_pred HHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHH
Confidence 68999999999999999999999874 2234567789999999999999999999998762 2 335
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CC--
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT----NN-- 126 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~-- 126 (207)
..+.++|.+|...|++++|.+.|++++ ....+..+|..+.+.+++.+|...|.++..+. |+
T Consensus 368 ~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~ 447 (508)
T KOG1840|consen 368 KIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHP 447 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCC
Confidence 689999999999999999999999999 45678899999999999999999999998765 22
Q ss_pred ----ccccHHHHHHHHHHHhcccc
Q 040667 127 ----KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 127 ----~~~~~~~~~~~~~~~~~~~~ 146 (207)
...+++.++..++++++++.
T Consensus 448 ~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 448 DVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred chHHHHHHHHHHHHHcccHHHHHH
Confidence 44666777777788887764
No 76
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.38 E-value=2.1e-11 Score=75.53 Aligned_cols=94 Identities=30% Similarity=0.426 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDV 107 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~ 107 (207)
+++.+|.++...|++++|+..+++++...|.++.++..+|.++...+++++|+..|++++ +..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 577899999999999999999999999999999999999999999999999999999998 667899999999999
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 040667 108 GNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 108 ~~~~~A~~~~~~al~~~p~ 126 (207)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999998873
No 77
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.37 E-value=2.2e-11 Score=79.39 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=84.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLH 75 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~ 75 (207)
.+|..+...|++++|+..|.+++..+|++ +.+++.+|.++...|++++|+..|++++...|++ +.++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 46888999999999999999999999876 5688999999999999999999999999998875 67899999999
Q ss_pred HHhcCHHHHHHHHHHHh
Q 040667 76 MIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~ 92 (207)
...|++++|+..+++++
T Consensus 87 ~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 87 QELGDKEKAKATLQQVI 103 (119)
T ss_pred HHhCChHHHHHHHHHHH
Confidence 99999999999999887
No 78
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.37 E-value=2.5e-11 Score=84.23 Aligned_cols=91 Identities=23% Similarity=0.177 Sum_probs=80.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH--
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM-- 76 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~-- 76 (207)
.+|..+...|++++|+.+|++++...|+. +.++.++|.++...|++++|+..+++++.+.|.....+.++|.++.
T Consensus 40 ~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~ 119 (168)
T CHL00033 40 RDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR 119 (168)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 46888899999999999999999987763 4589999999999999999999999999999999999999999988
Q ss_pred -----HhcCHHHHHHHHHHHh
Q 040667 77 -----IKKKSKEAFIAFKEAL 92 (207)
Q Consensus 77 -----~~~~~~~A~~~~~~~~ 92 (207)
..|++++|+..+.+++
T Consensus 120 ~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 120 GEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred hHHHHHcccHHHHHHHHHHHH
Confidence 8888887777776655
No 79
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.37 E-value=2.9e-11 Score=100.11 Aligned_cols=111 Identities=10% Similarity=-0.118 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---
Q 040667 16 SKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL--- 92 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 92 (207)
++.-........|.++.++..||.+....|.+++|+..++.++++.|++..++.+++.++.+.+++++|+..+++++
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~ 150 (694)
T PRK15179 71 ALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG 150 (694)
T ss_pred hHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC
Confidence 33333344455788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 --YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 --~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+...++.+|.++...|++++|+.+|++++..+|+
T Consensus 151 p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~ 186 (694)
T PRK15179 151 SSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE 186 (694)
T ss_pred CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC
Confidence 8899999999999999999999999999998876
No 80
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.36 E-value=8.5e-11 Score=91.10 Aligned_cols=122 Identities=19% Similarity=0.149 Sum_probs=99.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHH-------------------------------------HHHHHHHHHHccC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDG-------------------------------------WFALGAAALKARD 46 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~-------------------------------------~~~l~~~~~~~~~ 46 (207)
|..+...|++++|...+++++..+|++..+ +..+|.++...|+
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 456677788888888888888777766533 2345667788899
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 47 VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---------YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 47 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
+++|+..+++++++.|+++.++..+|.+++..|++++|+..+++++ ....+..+|.++...|++++|...+
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999899999999999999999999999888 1234667899999999999999999
Q ss_pred HHHHhcCC
Q 040667 118 QMVLNMTN 125 (207)
Q Consensus 118 ~~al~~~p 125 (207)
++++...|
T Consensus 210 ~~~~~~~~ 217 (355)
T cd05804 210 DTHIAPSA 217 (355)
T ss_pred HHHhcccc
Confidence 99877666
No 81
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.36 E-value=3e-12 Score=75.40 Aligned_cols=63 Identities=33% Similarity=0.594 Sum_probs=39.8
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHh
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK-KSKEAFIAFKEAL 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~ 92 (207)
++..|..+|.+++..|++++|+..|+++++++|+++.+|+++|.++..+| ++.+|+..+++++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666 4666666666554
No 82
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=6.5e-12 Score=96.40 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=59.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
+..+..|++++|...|++++..+..+..+++++|..+..+|+.++|+++|-+.-.+--++..+++.++.+|..+.+..+|
T Consensus 498 n~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqa 577 (840)
T KOG2003|consen 498 NIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQA 577 (840)
T ss_pred ceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHH
Confidence 33344444555555555554444444444455555555555555555555444444444444445555555555555555
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++++.++. ++.++..+|.+|-+.|+..+|.+++-...+..|.
T Consensus 578 ie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~ 624 (840)
T KOG2003|consen 578 IELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC 624 (840)
T ss_pred HHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCc
Confidence 55544444 4444455555555555555555554444444443
No 83
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.34 E-value=2.4e-10 Score=81.72 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=112.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACLHM 76 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~ 76 (207)
.|..++..|+|.+|+..|++++...|.. +.+.+.+|.+++..|+++.|+..+++.+...|+++ .+++.+|.+++
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 5788999999999999999999998875 46889999999999999999999999999999874 67888999877
Q ss_pred Hhc-----------CHHHHHHHHHHHh----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 77 IKK-----------KSKEAFIAFKEAL----------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 77 ~~~-----------~~~~A~~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
... ...+|+..|+..+ -..--+.+|..|.+.|.+..|+..++.+++.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~ 170 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIEN 170 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 653 3458888888888 2223356788999999999999999999999
Q ss_pred CCCccccHHHHHHHHHHHhcc
Q 040667 124 TNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 124 ~p~~~~~~~~~~~~~~~~~~~ 144 (207)
.|+.......+..+...+...
T Consensus 171 yp~t~~~~~al~~l~~~y~~l 191 (203)
T PF13525_consen 171 YPDTPAAEEALARLAEAYYKL 191 (203)
T ss_dssp STTSHHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHHHHh
Confidence 998666656666655555443
No 84
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=6e-11 Score=95.80 Aligned_cols=125 Identities=21% Similarity=0.231 Sum_probs=117.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.|..+...++.++|..++.++-.++|..+..|+..|.++...|.+++|...|..++.++|+++.+...+|.++...|+..
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHH--HHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 83 EAFI--AFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 83 ~A~~--~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
-|.. .+..++ +..+|+.+|.++...|+.++|..+|.-++++.+.+
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 8877 888888 89999999999999999999999999999998863
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.34 E-value=7.4e-12 Score=73.69 Aligned_cols=61 Identities=31% Similarity=0.604 Sum_probs=53.0
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc-CHHHHHHHHHHHHccCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR-DVEKALDGFTRAVQLDP 62 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~p 62 (207)
.+|..++..|+|++|+.+|++++..+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46888888888888888888888888888888888888888888 78888888888888877
No 86
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.33 E-value=4.9e-10 Score=82.06 Aligned_cols=142 Identities=15% Similarity=0.108 Sum_probs=117.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGW---FALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHM 76 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~ 76 (207)
.|..++..|+|++|+..|++++...|..+.+. +.+|.++++.+++++|+..+++.+...|++ +.+++.+|.++.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 46778899999999999999999999887654 889999999999999999999999999877 467888998865
Q ss_pred Hhc---------------C---HHHHHHHHHHHh----------------------cHHHHHHHHHHHHHcCCHHHHHHH
Q 040667 77 IKK---------------K---SKEAFIAFKEAL----------------------YWQLWENYSHVALDVGNIGQALEA 116 (207)
Q Consensus 77 ~~~---------------~---~~~A~~~~~~~~----------------------~~~~~~~l~~~~~~~~~~~~A~~~ 116 (207)
..+ + ..+|+..|++.+ -..--+.+|..|.+.|.+.-|+.-
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r 197 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNR 197 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence 543 1 346778888887 222235678889999999999999
Q ss_pred HHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 117 VQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 117 ~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
++.+++..|+.....+.+..+...+...
T Consensus 198 ~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 198 VEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 9999999999888777777777766553
No 87
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.4e-11 Score=90.83 Aligned_cols=120 Identities=14% Similarity=0.086 Sum_probs=71.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|.+|+..|-+.+|.+.++.++...| .++.+..++.+|.+..+.+.|+..+.+.++..|.+......++.++...+++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 367777777777777777777777665 5556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
++|.+.|+.++ +..+.-.+|.-|+..++.+-|..+|++.+.
T Consensus 307 ~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq 352 (478)
T KOG1129|consen 307 EDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQ 352 (478)
T ss_pred HHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHH
Confidence 66666666655 333333333334444444444444444443
No 88
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=99.32 E-value=1.7e-10 Score=92.93 Aligned_cols=116 Identities=16% Similarity=0.152 Sum_probs=102.5
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--------cCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhcCH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKA--------RDVEKALDGFTRAVQL--DPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~ 81 (207)
+...|+.+|+++++.+|++..++-.++.++... .+...+.....+++.+ +|.++.++..+|..+...|++
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~ 436 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT 436 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH
Confidence 478999999999999999999999888887554 2345677777776664 777889999999999999999
Q ss_pred HHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 82 KEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 82 ~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
++|...+++++ +..+|..+|.++...|++++|+..|.+|+.++|..
T Consensus 437 ~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 437 DEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 99999999999 77889999999999999999999999999999973
No 89
>PRK15331 chaperone protein SicA; Provisional
Probab=99.32 E-value=8.4e-11 Score=79.16 Aligned_cols=102 Identities=15% Similarity=0.086 Sum_probs=80.5
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHH
Q 040667 21 EAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQ 95 (207)
Q Consensus 21 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~ 95 (207)
..+..+.++.-+..+..|.-++..|++++|...|+-..-.+|.+++.|..||.++..+++|++|+..|..+. ++.
T Consensus 27 k~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~ 106 (165)
T PRK15331 27 KDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR 106 (165)
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Confidence 344445555566777788888888888888888888888888888888888888888888888888887777 777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
..+..|.|+..+|+.+.|..+|..+++
T Consensus 107 p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 788888888888888888888888877
No 90
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.30 E-value=4.9e-11 Score=91.68 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=121.0
Q ss_pred hHHHHHhcC--CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRG--GYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~--~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
|...++.+| ++..|..+...++.++..++.+..+.|.+.+..|++++|.+.|+.++.-+.....+++++|..+..+|+
T Consensus 460 l~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ 539 (840)
T KOG2003|consen 460 LCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGN 539 (840)
T ss_pred hHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcC
Confidence 444445433 788888899999999998999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhcc
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEGR 144 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~ 144 (207)
.++|+.+|-+.. +..++..++.+|..+.+..+|++++.++..+-|+ +...+..+...+++.
T Consensus 540 ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~---dp~ilskl~dlydqe 605 (840)
T KOG2003|consen 540 LDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN---DPAILSKLADLYDQE 605 (840)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC---CHHHHHHHHHHhhcc
Confidence 999999998866 8899999999999999999999999999999997 555555555555443
No 91
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.9e-10 Score=87.35 Aligned_cols=88 Identities=17% Similarity=0.142 Sum_probs=73.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
|...+..++|..|+.+-.++|+.+|++..++...|..+..+|+.++|+..|+.+..+.|..-+.|..+-.+|...|++.|
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE 386 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE 386 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence 34567788899999999999999999999999999999999999999999999999998888888888888877777776
Q ss_pred HHHHHHHH
Q 040667 84 AFIAFKEA 91 (207)
Q Consensus 84 A~~~~~~~ 91 (207)
|...-+.+
T Consensus 387 A~~~An~~ 394 (564)
T KOG1174|consen 387 ANALANWT 394 (564)
T ss_pred HHHHHHHH
Confidence 66444433
No 92
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.28 E-value=4.7e-10 Score=86.73 Aligned_cols=129 Identities=17% Similarity=0.095 Sum_probs=114.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.+.+++..++..+|.+.+++++..+|+.+..+.++|.++++.|++.+|+..++..+..+|+++..|..++.+|..+|+..
T Consensus 346 ~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 346 AGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhc
Q 040667 83 EAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEG 143 (207)
Q Consensus 83 ~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 143 (207)
++... .+..+...|++++|+..+..+.+...-....+..+...+..+..
T Consensus 426 ~a~~A------------~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~~~~ 474 (484)
T COG4783 426 EALLA------------RAEGYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQLRQ 474 (484)
T ss_pred HHHHH------------HHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH
Confidence 87655 55678999999999999999998775555667666666555443
No 93
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=8.9e-10 Score=78.67 Aligned_cols=124 Identities=12% Similarity=0.079 Sum_probs=114.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
.+.+..|+.+-|..++++.-...|++..+-...|..+...|++++|+++|...++-+|.+..++-..-.+...+|+..+|
T Consensus 60 IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~a 139 (289)
T KOG3060|consen 60 IAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEA 139 (289)
T ss_pred HHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHH
Confidence 34567889999999999999999999999999999999999999999999999999999988888877888899999999
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
++.+...+ +..+|..++.+|...|++++|.-|+++.+-+.|.++
T Consensus 140 Ik~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~ 188 (289)
T KOG3060|consen 140 IKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP 188 (289)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH
Confidence 99888877 999999999999999999999999999999999844
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=9.1e-11 Score=88.87 Aligned_cols=123 Identities=20% Similarity=0.264 Sum_probs=110.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPD------------GWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEA 67 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~ 67 (207)
|.+++...+.+.|+.+|++++..+|+... .+...|.-.++.|++..|.+.|..++.++|.+ +..
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl 289 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL 289 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence 45567778999999999999999998754 35567888899999999999999999999976 456
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|.+++.+...+|+..+|+..++.++ ...++...|.|+...++|++|++.|+++++...+
T Consensus 290 Y~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 290 YGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999999999999999 6778999999999999999999999999998765
No 95
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.28 E-value=3e-10 Score=95.76 Aligned_cols=123 Identities=12% Similarity=-0.017 Sum_probs=63.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
+...+..|+++.|+..|+++++.+|+++.+...+..++...|+.++|+.++++++...|........+|.++...|++++
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 45556666777777777777766666643322444444445555555555555552222233333333445555555555
Q ss_pred HHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 84 AFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 84 A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|++.|++++ +..++..++.++...++.++|+..+.++...+|.
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~ 168 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT 168 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc
Confidence 555555555 4444444445555555555555555555555554
No 96
>PRK15331 chaperone protein SicA; Provisional
Probab=99.27 E-value=1.7e-10 Score=77.75 Aligned_cols=90 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.|..++..|++++|...|+-....+|.+++.|+.||.|+..+++|++|+..|.-+..++++++...+..|.|+..+|+..
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 57788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|+..|..++
T Consensus 123 ~A~~~f~~a~ 132 (165)
T PRK15331 123 KARQCFELVN 132 (165)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 97
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=2.2e-10 Score=86.81 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=98.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---------------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---------------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE 66 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 66 (207)
.-|..++..|+|..|...|++++..-... ..++.+++.|+.++++|..|+..+.+++.++|+|+.
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh
Confidence 35788899999999999999988753311 136778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhcCC
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQ-ALEAVQMVLNMTN 125 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~-A~~~~~~al~~~p 125 (207)
+++..|.++..+|+|+.|+..|++++ +-.+...+..|..+..++.+ ..+.|.+++...+
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 99999999999999999998888888 66677777777766665554 4677777766544
No 98
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.26 E-value=4.5e-11 Score=73.14 Aligned_cols=77 Identities=19% Similarity=0.255 Sum_probs=67.1
Q ss_pred ccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 44 ARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 44 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
.|+|+.|+..++++++..|. +...++.+|.+++..|++++|+..+++.- +....+.+|.|+.++|++++|+..+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 58999999999999999995 56778889999999999999999998822 6677888899999999999999999
Q ss_pred HHH
Q 040667 118 QMV 120 (207)
Q Consensus 118 ~~a 120 (207)
.++
T Consensus 82 ~~~ 84 (84)
T PF12895_consen 82 EKA 84 (84)
T ss_dssp HHH
T ss_pred hcC
Confidence 875
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.25 E-value=5.1e-10 Score=94.41 Aligned_cols=128 Identities=13% Similarity=0.045 Sum_probs=105.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
++.++...|++++|+.++++++...|........+|.++...|++++|++.|+++++.+|+++.++..++.++...++.+
T Consensus 74 ll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~ 153 (822)
T PRK14574 74 WLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGG 153 (822)
T ss_pred HHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHH
Confidence 35677788999999999999994444455555556889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 040667 83 EAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRID 130 (207)
Q Consensus 83 ~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 130 (207)
+|++.++++. ....+..++.++...++..+|+..++++++.+|++...
T Consensus 154 eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~ 205 (822)
T PRK14574 154 VVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEV 205 (822)
T ss_pred HHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHH
Confidence 9999999999 22223444555555677777999999999999984333
No 100
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.25 E-value=4.3e-11 Score=70.18 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=61.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
++..|+|++|+..|++++..+|++..+++.+|.+++..|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3578999999999999999999999999999999999999999999999999999999888877765
No 101
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.24 E-value=6.3e-10 Score=82.04 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=62.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-----HHHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN-----GEAWNNIACLHMI 77 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~~l~~~~~~ 77 (207)
||.-|+..|-++.|...|....+...--..+.-.+..+|....+|++|++..++...+.+.. +..++.++..+..
T Consensus 113 L~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 113 LGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 44555555555555555555544333333444455555555555555555555555544432 2334445555555
Q ss_pred hcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 78 KKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..+.+.|+..+.+++ ...+-..+|.++...|+++.|++.++.+++.+|.
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 193 SSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred hhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 555555555555555 3344444555555555555555555555555554
No 102
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=99.23 E-value=1.3e-09 Score=84.52 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=103.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
..+...++++.|+..+++....+|+ +...++.++...++-.+|+..+.+++...|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3445578999999999999988874 5567899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+...++++ +...|+.++.+|...|+++.|+..++.+-..
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 99999999 8889999999999999999999887754433
No 103
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.23 E-value=8e-10 Score=86.99 Aligned_cols=123 Identities=12% Similarity=0.075 Sum_probs=94.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----------------------
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL----------------------- 60 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------------- 60 (207)
+..+...|++++|+..+++..+.+|+++.++..++.+|...|+|++|++.+.+..+.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~ 239 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQA 239 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 567778888888888888888888888888888888888888888888555544422
Q ss_pred -------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------------------------
Q 040667 61 -------------------DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----------------------------- 92 (207)
Q Consensus 61 -------------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------------------- 92 (207)
.|+++.++..++..+...|+.++|...+++++
T Consensus 240 ~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 240 MADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHH
Confidence 12345566667777778888888888777776
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 -------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+...+..+|.++...+++++|..+|+++++..|+
T Consensus 320 ~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~ 360 (398)
T PRK10747 320 QIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD 360 (398)
T ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 5667778888888888888888888888888886
No 104
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.22 E-value=1.5e-10 Score=68.88 Aligned_cols=70 Identities=26% Similarity=0.385 Sum_probs=64.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIA 72 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 72 (207)
|...++..++|++|+.++++++..+|+++..+..+|.++..+|++++|...++++++..|+++.+....+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 4678999999999999999999999999999999999999999999999999999999999887766544
No 105
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=1.4e-10 Score=87.82 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=114.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH------------HHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG------------EAWNNI 71 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------------~~~~~l 71 (207)
+.++...|++++|...--..++.++.+.++++..|.+++..++.+.|+..|++++.++|+.. ..|..-
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 45667889999999999999999999999999999999999999999999999999999874 457778
Q ss_pred HHHHHHhcCHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 72 ACLHMIKKKSKEAFIAFKEAL---------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|.-.++.|++..|.+.|..++ +...|.+.+.+..++|+..+|+...+.+++++|.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s 319 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS 319 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH
Confidence 888999999999999999999 7788999999999999999999999999999998
No 106
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=1.5e-09 Score=80.15 Aligned_cols=125 Identities=17% Similarity=0.155 Sum_probs=112.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP-----DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM 76 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 76 (207)
.|-.+|....+|++|++.-++.....+... ..+..++..+....+.+.|...+.++++-+|++..+-..+|.++.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~ 225 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVEL 225 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHH
Confidence 466788889999999999999999887653 466788888888999999999999999999999999999999999
Q ss_pred HhcCHHHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 77 IKKKSKEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|+|+.|++.++.++ -..+...+..||...|+.++....+.++.+..++
T Consensus 226 ~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 226 AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 9999999999999999 5567788889999999999999999999998875
No 107
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.21 E-value=8.6e-10 Score=87.16 Aligned_cols=121 Identities=17% Similarity=0.016 Sum_probs=102.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHH--HHHHHHHHHccCHHHHHHHHHHHHccCCCCH--HHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGW--FALGAAALKARDVEKALDGFTRAVQLDPDNG--EAWNNIACLHMIK 78 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~--~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~--~~~~~l~~~~~~~ 78 (207)
+|..+...|++++|...++++++..|++.... ..........++.+.++..++++++..|+++ .+...+|++++..
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~ 348 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKH 348 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHc
Confidence 57788899999999999999999999887532 2333444456888999999999999999999 8888999999999
Q ss_pred cCHHHHHHHHHH--Hh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 79 KKSKEAFIAFKE--AL----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 79 ~~~~~A~~~~~~--~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
|++++|.++|++ ++ +...+..+|.++.+.|+.++|.++|++++..
T Consensus 349 ~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 349 GEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred ccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999994 54 5566779999999999999999999998764
No 108
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.21 E-value=9.6e-10 Score=81.19 Aligned_cols=96 Identities=18% Similarity=0.131 Sum_probs=86.6
Q ss_pred HHHHHHHHHH-HHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHH
Q 040667 32 DGWFALGAAA-LKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWEN 99 (207)
Q Consensus 32 ~~~~~l~~~~-~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~ 99 (207)
...+..+..+ +..|+|++|+..|++.+...|++ +.+++.+|.+|+..|++++|+..|++++ ...+++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 4566677665 56799999999999999999987 5899999999999999999999999999 6788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 100 YSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 100 l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+|.++...|++++|+..|+++++..|+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 9999999999999999999999999973
No 109
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.17 E-value=4e-09 Score=83.36 Aligned_cols=125 Identities=15% Similarity=0.057 Sum_probs=101.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYP-DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
|..+...|+++.|..++.++.+..|+.. .+....+.++...|++++|...+++..+..|+++.++..++.++...|+++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~ 204 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ 204 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence 5667778888888888888888888765 455567888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh-----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 83 EAFIAFKEAL-----------------------------------------------YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 83 ~A~~~~~~~~-----------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
+|.+.+.+.. +..++..++..+...|++++|..
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~ 284 (409)
T TIGR00540 205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE 284 (409)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence 7776555544 44667778888899999999999
Q ss_pred HHHHHHhcCCCcc
Q 040667 116 AVQMVLNMTNNKR 128 (207)
Q Consensus 116 ~~~~al~~~p~~~ 128 (207)
.+.++++..|++.
T Consensus 285 ~l~~~l~~~pd~~ 297 (409)
T TIGR00540 285 IIFDGLKKLGDDR 297 (409)
T ss_pred HHHHHHhhCCCcc
Confidence 9999999988743
No 110
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.17 E-value=8.7e-10 Score=81.42 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=79.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCH
Q 040667 8 YNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKS 81 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~ 81 (207)
+..|+|++|+..|++.+..+|++ +.+++.+|.+|+..|++++|+..|++++...|++ +++++.+|.++..+|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 55799999999999999999987 5799999999999999999999999999888764 78999999999999999
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
++|...|++++
T Consensus 234 ~~A~~~~~~vi 244 (263)
T PRK10803 234 AKAKAVYQQVI 244 (263)
T ss_pred HHHHHHHHHHH
Confidence 99999999887
No 111
>PRK11906 transcriptional regulator; Provisional
Probab=99.16 E-value=2.2e-09 Score=83.36 Aligned_cols=115 Identities=13% Similarity=0.180 Sum_probs=106.4
Q ss_pred CHHHHHHHHHHHH---HhCCCChHHHHHHHHHHHHc---------cCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 12 GYETSKILWEAAM---ALSSLYPDGWFALGAAALKA---------RDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 12 ~~~~A~~~~~~al---~~~p~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
..+.|+.+|.+++ .++|++..++..++.|++.. .+..+|....+++++++|.++.++..+|.+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3467999999999 99999999999999998754 34578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++.|...|++++ .+.+|+..|.+..-.|+.++|...++++++++|.
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 9999999999999 8889999999999999999999999999999996
No 112
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.16 E-value=3.6e-09 Score=68.61 Aligned_cols=91 Identities=23% Similarity=0.138 Sum_probs=76.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC---CHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPD---NGEAWNNIACLH 75 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~ 75 (207)
.+|.++-..|+.++|+.+|++++...+.. ..+++.+|.++..+|++++|+..+++++...|+ +..+...++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 46778888999999999999999876544 457888999999999999999999999988887 677788888899
Q ss_pred HHhcCHHHHHHHHHHHh
Q 040667 76 MIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~ 92 (207)
...|++++|+..+-.++
T Consensus 86 ~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHCCCHHHHHHHHHHHH
Confidence 99999999998887665
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.15 E-value=1e-09 Score=74.32 Aligned_cols=89 Identities=24% Similarity=0.299 Sum_probs=78.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
+|..++..|++++|...|++++...|+. +.+.+.++.++...|++++|+..++. +.-.+-.+.++..+|.++...|
T Consensus 54 lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g 132 (145)
T PF09976_consen 54 LAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQG 132 (145)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCC
Confidence 6889999999999999999999988655 35778899999999999999999977 3344456778999999999999
Q ss_pred CHHHHHHHHHHHh
Q 040667 80 KSKEAFIAFKEAL 92 (207)
Q Consensus 80 ~~~~A~~~~~~~~ 92 (207)
++++|+..|++++
T Consensus 133 ~~~~A~~~y~~Al 145 (145)
T PF09976_consen 133 DYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHhC
Confidence 9999999999875
No 114
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.13 E-value=3.9e-09 Score=83.15 Aligned_cols=119 Identities=14% Similarity=0.083 Sum_probs=105.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..+...|+.++|...++++++..| ++......+.+ ..+++++++..+++.++.+|+++..+..+|.++...++++
T Consensus 269 ~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~ 345 (398)
T PRK10747 269 MAEHLIECDDHDTAQQIILDGLKRQY-DERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQ 345 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC-CHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHH
Confidence 57788899999999999999999544 66554444444 4499999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 83 EAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 83 ~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+|.+.|++++ +...+..++.++...|+.++|..+|++++.+.
T Consensus 346 ~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 346 EASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999 66677899999999999999999999998764
No 115
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.13 E-value=1.2e-09 Score=86.91 Aligned_cols=142 Identities=15% Similarity=0.171 Sum_probs=124.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
.-.+..++|.+.++..++.+...|.+++.....|..+..+|+-++|....+.++..++.+...|..+|.++....+|++|
T Consensus 15 lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 15 LKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc---cccHHHHHHHHHHHhcccc
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK---RIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~ 146 (207)
+++|+.|+ +..+|.-++.+..++++++-......+.+++.|+. +...++-..+.+.+..+..
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 88999999999999999999999999999999983 3334444555566555543
No 116
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.13 E-value=4.8e-10 Score=65.05 Aligned_cols=58 Identities=31% Similarity=0.535 Sum_probs=47.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+.+|..++..|++++|+..|++++...|+++.+|..+|.++..+|++++|+..|++++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3578888999999999999999999999988888888888888888887777777664
No 117
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.10 E-value=4.7e-09 Score=83.71 Aligned_cols=137 Identities=17% Similarity=0.177 Sum_probs=102.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..+...++|++|+++|+.|+...|++...+..++....++++++.....-.+.+++.|..-..|...+.++.-.|++.
T Consensus 81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~ 160 (700)
T KOG1156|consen 81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK 160 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 45566666777777777777777777777777777777777777777777777777777777778888888888888888
Q ss_pred HHHHHHHHHh-----------------------------------------------cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 83 EAFIAFKEAL-----------------------------------------------YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 83 ~A~~~~~~~~-----------------------------------------------~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
.|....+... ........+.++++++++++|..
T Consensus 161 ~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~ 240 (700)
T KOG1156|consen 161 MALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVK 240 (700)
T ss_pred HHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence 8876655433 22334556788999999999999
Q ss_pred HHHHHHhcCCCccccHHHHHHHHH
Q 040667 116 AVQMVLNMTNNKRIDTELLERIVL 139 (207)
Q Consensus 116 ~~~~al~~~p~~~~~~~~~~~~~~ 139 (207)
.|...+..+|++......+....+
T Consensus 241 ~y~~Ll~rnPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 241 VYRRLLERNPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHhhCchhHHHHHHHHHHHH
Confidence 999999999995555444444444
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.10 E-value=6.7e-09 Score=87.46 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=86.5
Q ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------------
Q 040667 27 SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------------- 92 (207)
Q Consensus 27 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------- 92 (207)
.+++..+++.+|.||-++|++++|...|+++++++|+++.+.+++|..|... +.++|++++.+++
T Consensus 112 ~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e 190 (906)
T PRK14720 112 YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEE 190 (906)
T ss_pred hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 3444478999999999999999999999999999999999999999999999 9999999999998
Q ss_pred -------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 93 -------------------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 93 -------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
-...+.-+-.+|...+++++++..++.+++.+|.+
T Consensus 191 ~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n 256 (906)
T PRK14720 191 IWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN 256 (906)
T ss_pred HHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc
Confidence 11222333377888899999999999999999983
No 119
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.10 E-value=2.9e-09 Score=79.37 Aligned_cols=90 Identities=17% Similarity=0.191 Sum_probs=76.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
....++..|++..|+.+....+++.|.+...+...+.||...|+...|+.-++.+-.+..++.+.++.++.+++..|+.+
T Consensus 161 ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 161 QLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHH
Confidence 34456678888999999999999999888888888999999999999988888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
.++...+.|+
T Consensus 241 ~sL~~iRECL 250 (504)
T KOG0624|consen 241 NSLKEIRECL 250 (504)
T ss_pred HHHHHHHHHH
Confidence 8888777777
No 120
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.8e-09 Score=81.98 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=92.5
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCC----C-----------HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cH
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDPD----N-----------GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YW 94 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~ 94 (207)
...|..+++.|+|..|...|++++..-+. + ..++.|++.|+.++++|.+|+..+.+++ +.
T Consensus 212 ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~ 291 (397)
T KOG0543|consen 212 KERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV 291 (397)
T ss_pred HHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch
Confidence 45799999999999999999998876431 1 1468999999999999999999999999 99
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhc
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEG 143 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 143 (207)
.+++..|.++...|+++.|+..|++++++.|++......+..+...+.+
T Consensus 292 KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 292 KALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999965555555555444443
No 121
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.09 E-value=2.6e-09 Score=74.43 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHH
Q 040667 29 LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENY 100 (207)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l 100 (207)
....+++.+|.++...|++++|+..|++++...|+. +.++.++|.++...|++++|+..+++++ +...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 455678999999999999999999999999887653 5689999999999999999999999999 67788889
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 040667 101 SHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 101 ~~~~~~~~~~~~A~~~~~~a 120 (207)
|.++...|+...+...+..+
T Consensus 113 g~~~~~~g~~~~a~~~~~~A 132 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEA 132 (172)
T ss_pred HHHHHHcCChHhHhhCHHHH
Confidence 99998877654444444333
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.08 E-value=3.7e-09 Score=88.97 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=107.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-----------------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG----------------- 65 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----------------- 65 (207)
|...+...+++++|+..++.++..+|+...+++.+|.+++..+++.++... .++...+.+.
T Consensus 37 Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~ 114 (906)
T PRK14720 37 LIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE 114 (906)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence 567777899999999999999999999999999999999999888777666 5666555554
Q ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 66 --EAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 66 --~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.+++.+|.||.++|+.++|...|++++ ++.++.++|..|... ++++|+.++.+|+...-
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i 180 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFI 180 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999 899999999999999 99999999999987643
No 123
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.06 E-value=1.1e-09 Score=84.76 Aligned_cols=67 Identities=28% Similarity=0.431 Sum_probs=63.2
Q ss_pred hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 26 LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEA---WNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 26 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+|+++.+++++|.+++.+|+|++|+..|+++++++|++..+ |+++|.+|..+|++++|+.++++++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 368889999999999999999999999999999999999854 9999999999999999999999998
No 124
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.05 E-value=1.1e-09 Score=91.04 Aligned_cols=136 Identities=16% Similarity=0.201 Sum_probs=93.7
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-------------------------
Q 040667 11 GGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG------------------------- 65 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------------------------- 65 (207)
++...|...|-++++++|....++..+|.+|..--+...|...|++|.++++.+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3455555555566666555555555566665555555556666666655555543
Q ss_pred -----------HHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc-
Q 040667 66 -----------EAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR- 128 (207)
Q Consensus 66 -----------~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~- 128 (207)
..|..+|..|...+++..|+..|+.++ +...|..+|.+|...|++..|++.|.++..++|...
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y 631 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKY 631 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHH
Confidence 345556666777778888888888888 889999999999999999999999999999999832
Q ss_pred --ccHHHHHHHHHHHhcccc
Q 040667 129 --IDTELLERIVLDLEGRTS 146 (207)
Q Consensus 129 --~~~~~~~~~~~~~~~~~~ 146 (207)
...+...-..+.+.++++
T Consensus 632 ~~fk~A~~ecd~GkYkeald 651 (1238)
T KOG1127|consen 632 GRFKEAVMECDNGKYKEALD 651 (1238)
T ss_pred HHHHHHHHHHHhhhHHHHHH
Confidence 333444455556666554
No 125
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.05 E-value=1.4e-08 Score=81.73 Aligned_cols=124 Identities=18% Similarity=0.137 Sum_probs=111.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
+|..|-..|++++|+.+++++|...|..++.++..|.++-+.|++.+|.+.++.+-.+++.+-.+....+..+.+.|+++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e 279 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIE 279 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHH
Confidence 57778899999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred HHHHHHHHHh--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL--------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|.+.+.... ........|.+|.+.|++..|++.|..+.+..-+
T Consensus 280 ~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 280 EAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999887766 2233355589999999999999999999887644
No 126
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=8.1e-09 Score=71.48 Aligned_cols=89 Identities=22% Similarity=0.291 Sum_probs=69.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYP-----DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
|+.+|..|+|++|..-|..|+...|..+ ..+.+.|.++++++.++.|++.+.+++++.|.+..++...+.+|.+.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 5677788888888888888888877654 35667788888888888888888888888888877777777777777
Q ss_pred cCHHHHHHHHHHHh
Q 040667 79 KKSKEAFIAFKEAL 92 (207)
Q Consensus 79 ~~~~~A~~~~~~~~ 92 (207)
..|++|++.|++.+
T Consensus 182 ek~eealeDyKki~ 195 (271)
T KOG4234|consen 182 EKYEEALEDYKKIL 195 (271)
T ss_pred hhHHHHHHHHHHHH
Confidence 77777777777655
No 127
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.02 E-value=1.7e-08 Score=80.99 Aligned_cols=121 Identities=19% Similarity=0.179 Sum_probs=111.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
....+++.++|+.+++++++.+|+++..|..+|.++.++++.+.|.+.|...+..-|..+..|..++.+-.+.|+...|.
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR 739 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRAR 739 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHH
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 86 IAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 86 ~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..+.++. +...|......-.+.|+.++|.....+||+-.|+
T Consensus 740 ~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 740 SILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 9999998 7788888888899999999999999999998886
No 128
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.01 E-value=5.9e-09 Score=84.20 Aligned_cols=141 Identities=16% Similarity=0.230 Sum_probs=111.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH----------------------------HHccCHHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAA----------------------------LKARDVEKALDGFT 55 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----------------------------~~~~~~~~A~~~~~ 55 (207)
..+|...|+..+|.....+-++ .|.++..|..+|++. ...++|+++.+.++
T Consensus 431 i~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle 509 (777)
T KOG1128|consen 431 ILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLE 509 (777)
T ss_pred HHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHH
Confidence 3466677777777777777777 444666666555554 34578999999999
Q ss_pred HHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---c
Q 040667 56 RAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---K 127 (207)
Q Consensus 56 ~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~ 127 (207)
..++++|-....|+.+|.+..++++++.|.++|..++ +..+|.+++.+|.+.++..+|...+.++++.+-+ .
T Consensus 510 ~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~i 589 (777)
T KOG1128|consen 510 RSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQI 589 (777)
T ss_pred HHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCee
Confidence 9999999999999999999999999999999999999 8899999999999999999999999999998844 2
Q ss_pred cccHHHHHHHHHHHhccc
Q 040667 128 RIDTELLERIVLDLEGRT 145 (207)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~ 145 (207)
..+...+..-++.+++++
T Consensus 590 WENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 590 WENYMLVSVDVGEFEDAI 607 (777)
T ss_pred eechhhhhhhcccHHHHH
Confidence 233333333344455444
No 129
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.01 E-value=4.7e-08 Score=80.69 Aligned_cols=123 Identities=21% Similarity=0.224 Sum_probs=112.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.||.+|..+|+.+++...+-.|-.++|.+.+.|..++....++|++.+|.-+|.+|++.+|.+....+..+.+|.+.|++
T Consensus 178 tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~ 257 (895)
T KOG2076|consen 178 TLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDL 257 (895)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 82 KEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 82 ~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
..|+..|.+.+ ........+..+...++-+.|.+.+..++...
T Consensus 258 ~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 258 KRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 99999999999 22344556777888888899999999999843
No 130
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.5e-09 Score=75.47 Aligned_cols=90 Identities=23% Similarity=0.218 Sum_probs=85.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR---DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
||.+|+..|+++.|...|.+++++.|++++.+..+|.++.... ...++...+++++.++|.+..+.+.+|..++..|
T Consensus 162 Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g 241 (287)
T COG4235 162 LGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQG 241 (287)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcc
Confidence 7999999999999999999999999999999999999987654 4688999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHh
Q 040667 80 KSKEAFIAFKEAL 92 (207)
Q Consensus 80 ~~~~A~~~~~~~~ 92 (207)
+|.+|+..++..+
T Consensus 242 ~~~~A~~~Wq~lL 254 (287)
T COG4235 242 DYAEAAAAWQMLL 254 (287)
T ss_pred cHHHHHHHHHHHH
Confidence 9999999999988
No 131
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=99.01 E-value=2.7e-08 Score=64.56 Aligned_cols=91 Identities=21% Similarity=0.135 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENY 100 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l 100 (207)
.+++.+|.++-.+|+.++|+..|++++...... ..++..+|..+..+|++++|+..+++++ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 567899999999999999999999999976544 5689999999999999999999999999 44667778
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 040667 101 SHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 101 ~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+.++...|+.++|+..+..++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999988775
No 132
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.98 E-value=2.8e-08 Score=79.74 Aligned_cols=136 Identities=13% Similarity=0.080 Sum_probs=125.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|+++.++++.+.|...|...++..|+....|..++.+-.+.|..-.|...+.++.-.+|.+...|......-.+.|+.
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh-----------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----------------------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.|.....+++ ++.++..+|.++....+++.|..+|.++++.+|+
T Consensus 770 ~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 770 EQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred HHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 99998888877 7888899999999999999999999999999998
Q ss_pred ccccHHHHHHH
Q 040667 127 KRIDTELLERI 137 (207)
Q Consensus 127 ~~~~~~~~~~~ 137 (207)
....+..++..
T Consensus 850 ~GD~wa~fykf 860 (913)
T KOG0495|consen 850 NGDAWAWFYKF 860 (913)
T ss_pred cchHHHHHHHH
Confidence 66666665544
No 133
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.97 E-value=8.2e-09 Score=72.37 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=76.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
|..|-..|-+.-|.--|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|+..++++|.+..+..+.|..++.-|++.-
T Consensus 72 GvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L 151 (297)
T COG4785 72 GVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL 151 (297)
T ss_pred cchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence 44555666778888889999999999999999999999999999999999999999999999899999888888888877
Q ss_pred HHHHHHHHh
Q 040667 84 AFIAFKEAL 92 (207)
Q Consensus 84 A~~~~~~~~ 92 (207)
|.+.+.+..
T Consensus 152 Aq~d~~~fY 160 (297)
T COG4785 152 AQDDLLAFY 160 (297)
T ss_pred hHHHHHHHH
Confidence 776665543
No 134
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.97 E-value=2.5e-08 Score=74.96 Aligned_cols=117 Identities=17% Similarity=0.137 Sum_probs=67.3
Q ss_pred cCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCC--CC----HHHHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSL--Y----PDGWFALGAAALKA-RDVEKALDGFTRAVQLDP--DN----GEAWNNIACLHM 76 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p--~~----~~~~~~l~~~~~ 76 (207)
..++++|+.+|++++.+.-. . ..++..+|.+|... |++++|+++|++++.+.. +. ...+..+|.++.
T Consensus 87 ~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 87 KGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYA 166 (282)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHH
Confidence 33666666666666665321 1 23455666666666 677777777777666521 11 234556666677
Q ss_pred HhcCHHHHHHHHHHHh-----------cH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 77 IKKKSKEAFIAFKEAL-----------YW-QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~-----------~~-~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|+|++|++.|++.. .. ..+...+.|+...|++..|...+.+....+|.
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~ 228 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPS 228 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTT
T ss_pred HhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 7777777777776665 11 23445556666667777777777777666665
No 135
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.96 E-value=6.9e-09 Score=79.16 Aligned_cols=125 Identities=12% Similarity=0.174 Sum_probs=106.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccC----CC--CHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLD----PD--NGEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~--~~~~~~ 69 (207)
+||+.|+-.|+|+.|+..-+.-+.+..... .++.++|.++.-+|+++.|+++|++.+.+. .. .+...+
T Consensus 200 nLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscY 279 (639)
T KOG1130|consen 200 NLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCY 279 (639)
T ss_pred ccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 688999999999999999888887754432 478899999999999999999999977653 22 245678
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|..|.-+.+++.|+.++.+-+ ...+++.+|..+-..|..++|..+....+++...
T Consensus 280 SLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 280 SLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998877 6778899999999999999999999888876543
No 136
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=6.1e-09 Score=84.50 Aligned_cols=90 Identities=27% Similarity=0.220 Sum_probs=86.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH--HHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALD--GFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
.|..+..+|++.+|...|..++.++|+++.+...+|.++.+.|+..-|.. .+..++.++|.++.+|+.+|.++.++|+
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc
Confidence 57788889999999999999999999999999999999999999888888 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 040667 81 SKEAFIAFKEAL 92 (207)
Q Consensus 81 ~~~A~~~~~~~~ 92 (207)
.++|.++|..++
T Consensus 770 ~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 770 SKQAAECFQAAL 781 (799)
T ss_pred hHHHHHHHHHHH
Confidence 999999999887
No 137
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.96 E-value=4.5e-09 Score=78.41 Aligned_cols=92 Identities=21% Similarity=0.210 Sum_probs=57.8
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCC
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGN 109 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~ 109 (207)
...|+.|++.|.|++|+++|.+++..+|.++..+.+.+.+|+++..|..|...+..++ ...+|...+.+-..+|.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666666666666666666666666666666666666666666666665 44555666666666666
Q ss_pred HHHHHHHHHHHHhcCCC
Q 040667 110 IGQALEAVQMVLNMTNN 126 (207)
Q Consensus 110 ~~~A~~~~~~al~~~p~ 126 (207)
..+|.+.++.+|++.|+
T Consensus 181 ~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHhHHHHHhhCcc
Confidence 66666666666666665
No 138
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.94 E-value=3e-08 Score=72.06 Aligned_cols=93 Identities=14% Similarity=0.122 Sum_probs=86.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHH
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSH 102 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~ 102 (207)
.+..+.-+++.|+|..|...|...+...|++ +.++++||.+++.+|+|++|...|..++ -+..++.+|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 6778888899999999999999999998876 5889999999999999999999999998 6789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 103 VALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+...+|+.++|...|.++++..|+
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999999997
No 139
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.94 E-value=7.3e-09 Score=77.34 Aligned_cols=90 Identities=19% Similarity=0.154 Sum_probs=87.7
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.|+.|+.+|.|++|++||.+++..+|.++..+.+.+..|+++..|..|..-+..++.++.....+|...|.+-..+|+..
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|.+.++.++
T Consensus 183 EAKkD~E~vL 192 (536)
T KOG4648|consen 183 EAKKDCETVL 192 (536)
T ss_pred HHHHhHHHHH
Confidence 9999999998
No 140
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.94 E-value=1.4e-08 Score=72.09 Aligned_cols=89 Identities=18% Similarity=0.200 Sum_probs=84.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
|..++..+.|..|+.+|.++|.++|..+..|.+.+.|++++.+|+.+....+++++++|+.....+.+|.+......|++
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred cccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 55677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 040667 84 AFIAFKEAL 92 (207)
Q Consensus 84 A~~~~~~~~ 92 (207)
|+..+.++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 999999996
No 141
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.93 E-value=7e-10 Score=84.45 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=27.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL------YPDGWFALGAAALKA 44 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~ 44 (207)
+||+.+-.+|.|++|+.++.+-+.+... ...+++++|.+|...
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhak 148 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAK 148 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhc
Confidence 5677777778888888777776654321 234566666666443
No 142
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.93 E-value=1.1e-07 Score=76.62 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=39.0
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.++..|...|++++|+++++++| .+..+...|.++...|++.+|..++..+-.+++.
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 555666666677777777777666 5566666677777777777777777766666665
No 143
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.93 E-value=1.7e-08 Score=75.86 Aligned_cols=121 Identities=20% Similarity=0.149 Sum_probs=98.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc--CH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK--KS 81 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~--~~ 81 (207)
|.+++..|++++|++.+.+. .+.++......++.++++++.|.+.++...+.+.+..-+...-+++....| ++
T Consensus 109 A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 109 ATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH
Confidence 45667788999988888764 567777788899999999999999999998888777666666666766666 59
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
.+|...|++.. ++.++..++.+++.+|++++|...+.+++..+|+++.
T Consensus 184 ~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 184 QDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 99999999977 7788899999999999999999999999999997443
No 144
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.93 E-value=4.2e-09 Score=63.41 Aligned_cols=65 Identities=18% Similarity=0.233 Sum_probs=39.6
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC---C-C---CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLD---P-D---NGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p-~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
|+...++.++|.++..+|+|++|+..|++++.+. + . ...++.++|.++...|++++|++++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3345667777888888888888888888877541 1 1 13345556666666666666665555553
No 145
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.91 E-value=5.4e-08 Score=75.50 Aligned_cols=144 Identities=16% Similarity=-0.035 Sum_probs=111.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHH-----------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAW----------- 68 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~----------- 68 (207)
+|..+...|+++.+...+.++....|.+ .......+.++...|++++|...+++++...|++..++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~ 91 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGD 91 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcc
Confidence 5677778899999999999988887755 34566789999999999999999999998888776433
Q ss_pred --------------------------HHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 69 --------------------------NNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 69 --------------------------~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
..+|.++...|++++|+..+++++ +..++..+|.++...|++++|+.++
T Consensus 92 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l 171 (355)
T cd05804 92 FSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFM 171 (355)
T ss_pred cccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHH
Confidence 234556677888888888888888 5677888888888888888888888
Q ss_pred HHHHhcCCCcc-------ccHHHHHHHHHHHhcccc
Q 040667 118 QMVLNMTNNKR-------IDTELLERIVLDLEGRTS 146 (207)
Q Consensus 118 ~~al~~~p~~~-------~~~~~~~~~~~~~~~~~~ 146 (207)
.+++...|... ...+.+....+++++++.
T Consensus 172 ~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 172 ESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred HhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888776421 134455555666666665
No 146
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.91 E-value=8.3e-09 Score=60.31 Aligned_cols=51 Identities=29% Similarity=0.304 Sum_probs=46.1
Q ss_pred HHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 42 LKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 42 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+..|++++|+..|++++..+|++..++..++.++...|++++|...+++++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 578999999999999999999999999999999999999999999988887
No 147
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.90 E-value=1.5e-09 Score=65.38 Aligned_cols=63 Identities=27% Similarity=0.330 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 62 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
|+-..++.++|.+|..+|++++|+.+|++++ ...++.++|.++...|++++|+.++++++++.
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3345678889999999999999999999888 35678888999999999999999999888753
No 148
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.90 E-value=6.6e-08 Score=63.90 Aligned_cols=113 Identities=19% Similarity=0.188 Sum_probs=85.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACLHM 76 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~ 76 (207)
-|...+..|+|++|++.|+......|.. ..+...+|.+|++.+++++|+..+++.+.++|.++ .+++..|.+++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 4677889999999999999999988754 46788999999999999999999999999999875 56888888887
Q ss_pred HhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 77 IKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
.+.. .++..+ . ..-...+...+|...|.++++..|+...
T Consensus 96 ~~~~--~~~~~~---------~---~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 96 EQDE--GSLQSF---------F---RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred HHhh--hHHhhh---------c---ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 7655 111110 0 1122223456788888888888887433
No 149
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.89 E-value=5.4e-08 Score=62.83 Aligned_cols=88 Identities=24% Similarity=0.260 Sum_probs=47.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---------cHHHHHHHHHHHHHcC
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---------YWQLWENYSHVALDVG 108 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------~~~~~~~l~~~~~~~~ 108 (207)
|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|+..+++++ .-.++...|.+|...|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 4444455555555555555555555555555555555555555555555555555 2234455555555555
Q ss_pred CHHHHHHHHHHHHhcCC
Q 040667 109 NIGQALEAVQMVLNMTN 125 (207)
Q Consensus 109 ~~~~A~~~~~~al~~~p 125 (207)
+.+.|..-|..+-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 55555555555555443
No 150
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=8.6e-08 Score=73.25 Aligned_cols=125 Identities=17% Similarity=0.246 Sum_probs=82.9
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH----------------------------------HHccCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAA----------------------------------LKARDV 47 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~----------------------------------~~~~~~ 47 (207)
.+|.+++..|++.+|+..|+++..++|....+.-..|..+ +..+++
T Consensus 237 ~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~ 316 (564)
T KOG1174|consen 237 ALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKF 316 (564)
T ss_pred HHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhH
Confidence 3678889999999999999999998887765444444443 444555
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 48 EKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+.|+.+-.|++..+|.+..++...|.++...|+.++|+-.|+.+. ....|-.+-.+|...|++.+|....+.+++
T Consensus 317 ~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 317 ERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666665 445556666666666666666666666666
Q ss_pred cCCC
Q 040667 123 MTNN 126 (207)
Q Consensus 123 ~~p~ 126 (207)
..|+
T Consensus 397 ~~~~ 400 (564)
T KOG1174|consen 397 LFQN 400 (564)
T ss_pred Hhhc
Confidence 5554
No 151
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.88 E-value=5.7e-08 Score=70.62 Aligned_cols=90 Identities=20% Similarity=0.268 Sum_probs=83.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHM 76 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~ 76 (207)
.|..++..|+|..|...|..-+...|+. +.+++.||.+++..|++++|...|..+..-.|++ ++++..+|.+..
T Consensus 147 ~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~ 226 (262)
T COG1729 147 AALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLG 226 (262)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 5677899999999999999999999976 5799999999999999999999999999987765 689999999999
Q ss_pred HhcCHHHHHHHHHHHh
Q 040667 77 IKKKSKEAFIAFKEAL 92 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~ 92 (207)
.+|+.++|-..|++++
T Consensus 227 ~l~~~d~A~atl~qv~ 242 (262)
T COG1729 227 RLGNTDEACATLQQVI 242 (262)
T ss_pred HhcCHHHHHHHHHHHH
Confidence 9999999999999988
No 152
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.87 E-value=2.5e-07 Score=63.53 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=90.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRGGYETSKILWEAAMA-LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~ 79 (207)
||......|++.+|..+|.+++. +..+++..+..++...+..+++..|...+++..+.+|. .++....+|..+..+|
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g 174 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQG 174 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcC
Confidence 67777788888888888888775 45667777788888888888888888888888887774 4667777888888888
Q ss_pred CHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 80 KSKEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 80 ~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
++.+|...|+.++ .......++..+.++|+.+++..-+....
T Consensus 175 ~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 175 KYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 8888888888877 66667777788888887776665554443
No 153
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.87 E-value=4.5e-08 Score=76.12 Aligned_cols=89 Identities=20% Similarity=0.158 Sum_probs=84.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
++.++...++-.+|+..+.+++..+|.+...+...+..+...++++.|+...++++.+.|.+-..|..|+.+|...|+++
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e 285 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE 285 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence 67888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 040667 83 EAFIAFKEA 91 (207)
Q Consensus 83 ~A~~~~~~~ 91 (207)
+|+..++.+
T Consensus 286 ~ALlaLNs~ 294 (395)
T PF09295_consen 286 NALLALNSC 294 (395)
T ss_pred HHHHHHhcC
Confidence 999877643
No 154
>PRK11906 transcriptional regulator; Provisional
Probab=98.85 E-value=1.4e-07 Score=73.46 Aligned_cols=111 Identities=11% Similarity=-0.004 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (207)
+-.+|..+.+++++++|.++.++..+|.+....++++.|...|++++.++|+.+.+|+..|.+....|+.++|++.++++
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 92 L------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 92 ~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+ .......+..-.+...-.++|+..|-+--+
T Consensus 399 lrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (458)
T PRK11906 399 LQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYKETE 435 (458)
T ss_pred hccCchhhHHHHHHHHHHHHcCCchhhhHHHHhhccc
Confidence 9 222222232213345567888888866443
No 155
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.85 E-value=4.1e-07 Score=72.30 Aligned_cols=120 Identities=16% Similarity=0.127 Sum_probs=75.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--------------------
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-------------------- 63 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-------------------- 63 (207)
|.+++..+..++|+.+++ ..++.+.......|.+++++|+|++|++.|+..+.-+.+
T Consensus 86 AYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred HHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 456666677777776666 344555556666677777777777777777766432211
Q ss_pred -----------CHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------------------cHHHHHHHHHHHHHcCCHHH
Q 040667 64 -----------NGEAWNNIACLHMIKKKSKEAFIAFKEAL--------------------YWQLWENYSHVALDVGNIGQ 112 (207)
Q Consensus 64 -----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~ 112 (207)
+-+.++|.+.++...|+|.+|++.+++++ -..+...++.++..+|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 12445666777777777777777777763 12344556666677777777
Q ss_pred HHHHHHHHHhcCCC
Q 040667 113 ALEAVQMVLNMTNN 126 (207)
Q Consensus 113 A~~~~~~al~~~p~ 126 (207)
|...|...++.+|.
T Consensus 243 a~~iy~~~i~~~~~ 256 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPA 256 (652)
T ss_pred HHHHHHHHHHhcCC
Confidence 77777777776664
No 156
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.84 E-value=4.2e-08 Score=73.77 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=95.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC--C----hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CC----HHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL--Y----PDGWFALGAAALKARDVEKALDGFTRAVQLDP--DN----GEAWNN 70 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~----~~~~~~ 70 (207)
.|..|...++|++|..+|.++....-. + ...+...+.++.+. ++++|+..|++++.+.- +. +..+..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~ 119 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 467788899999999999999776421 1 23556677777666 99999999999998632 22 467889
Q ss_pred HHHHHHHh-cCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 71 IACLHMIK-KKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 71 l~~~~~~~-~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+|.+|... |++++|+++|++++ ....+..+|.++...|+|++|+..|++.....
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~ 185 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC 185 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 99999998 99999999999999 45678899999999999999999999998754
No 157
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.84 E-value=4.9e-07 Score=66.35 Aligned_cols=118 Identities=13% Similarity=0.088 Sum_probs=98.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHcc---------------C---HHHHHHHHHHHHcc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKAR---------------D---VEKALDGFTRAVQL 60 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~---------------~---~~~A~~~~~~a~~~ 60 (207)
.+|.+++..++|++|+..+++.+..+|+++ .+++.+|.++...+ + ..+|+..|++.+..
T Consensus 74 ~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~ 153 (243)
T PRK10866 74 DLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG 153 (243)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999998775 57888898865544 1 25788999999999
Q ss_pred CCCCHH---H--------------HHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 61 DPDNGE---A--------------WNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 61 ~p~~~~---~--------------~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
.|++.. + -...|..|.+.|.|..|+.-++.++ ...++..++..|...|..++|..
T Consensus 154 yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~ 233 (243)
T PRK10866 154 YPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADK 233 (243)
T ss_pred CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHH
Confidence 998741 1 2356777999999999999999999 77889999999999999999988
Q ss_pred HHHH
Q 040667 116 AVQM 119 (207)
Q Consensus 116 ~~~~ 119 (207)
....
T Consensus 234 ~~~~ 237 (243)
T PRK10866 234 VAKI 237 (243)
T ss_pred HHHH
Confidence 7754
No 158
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.84 E-value=1.7e-07 Score=70.49 Aligned_cols=125 Identities=14% Similarity=0.005 Sum_probs=103.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKAR--DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
..+++..++++.|.+.++.+-+.+.+..-....-+++.+..| .+.+|...|+......|.++..+..++.++..+|+|
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~ 217 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY 217 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH
Confidence 467889999999999999998888776666666677777666 599999999998888888999999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhcCCCcc
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNI-GQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~-~~A~~~~~~al~~~p~~~ 128 (207)
++|...+.+++ ++.++.+++.+....|+. +.+.+++.++....|+++
T Consensus 218 ~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 218 EEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 99999999999 888999999999999998 566777877777888643
No 159
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.83 E-value=3.1e-08 Score=82.69 Aligned_cols=120 Identities=17% Similarity=0.119 Sum_probs=96.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.|-.|...+++..|+..|+.+++.+|.+..+|..+|.+|...|++..|++.|.++..++|.+..+.+..+......|+|.
T Consensus 568 rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYk 647 (1238)
T KOG1127|consen 568 RGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYK 647 (1238)
T ss_pred ccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHH
Confidence 45667888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----cHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHh
Q 040667 83 EAFIAFKEAL-----YWQLWENYSHVALD-------VGNIGQALEAVQMVLN 122 (207)
Q Consensus 83 ~A~~~~~~~~-----~~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~ 122 (207)
+|+..+...+ .......+|.++++ .|=...|..++++.++
T Consensus 648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999998888 33334444444433 3434445555555444
No 160
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.81 E-value=5.4e-07 Score=58.30 Aligned_cols=89 Identities=21% Similarity=0.222 Sum_probs=81.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHhc
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG----EAWNNIACLHMIKK 79 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~ 79 (207)
|......|+.+.|++.|.+++...|..+.+|++.+..+...|+.++|++-+++++++..... .++...|.+|..+|
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 56677889999999999999999999999999999999999999999999999999976543 56889999999999
Q ss_pred CHHHHHHHHHHHh
Q 040667 80 KSKEAFIAFKEAL 92 (207)
Q Consensus 80 ~~~~A~~~~~~~~ 92 (207)
+-+.|...|+.+-
T Consensus 130 ~dd~AR~DFe~AA 142 (175)
T KOG4555|consen 130 NDDAARADFEAAA 142 (175)
T ss_pred chHHHHHhHHHHH
Confidence 9999999998765
No 161
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.80 E-value=1.9e-07 Score=70.25 Aligned_cols=85 Identities=20% Similarity=0.135 Sum_probs=48.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYP-DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
+....+|..|+.+++-....+.... ..-..+|.|++.+|+|++|+..|.-+...+..++..|.+++.+++.+|.|.+|.
T Consensus 32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~ 111 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAK 111 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 3445566666666655554433222 334455666666666666666666666555555566666666666666666665
Q ss_pred HHHHHH
Q 040667 86 IAFKEA 91 (207)
Q Consensus 86 ~~~~~~ 91 (207)
..-.++
T Consensus 112 ~~~~ka 117 (557)
T KOG3785|consen 112 SIAEKA 117 (557)
T ss_pred HHHhhC
Confidence 554443
No 162
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.80 E-value=4.8e-08 Score=57.90 Aligned_cols=55 Identities=33% Similarity=0.437 Sum_probs=49.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
..+++..++|++|+..+++++.++|+++..|..+|.++...|++.+|+..|++++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l 56 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERAL 56 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5678899999999999999999999999999999999988888888888888776
No 163
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.80 E-value=1.8e-06 Score=62.47 Aligned_cols=142 Identities=20% Similarity=0.180 Sum_probs=114.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACLHM 76 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~ 76 (207)
-|...+..|+|++|+..|+.+...+|..+ .+...++..+++.+++++|+...++.+.+.|.++ -+++..|.+++
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHh
Confidence 46677899999999999999999988765 5778899999999999999999999999999775 45777888776
Q ss_pred Hh--------cCHHHHHHHHHHHh--------------------c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 77 IK--------KKSKEAFIAFKEAL--------------------Y--WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 77 ~~--------~~~~~A~~~~~~~~--------------------~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.. .-..+|+..|+..+ + ..--..+|..|.+.|.+..|+..++.+++.-|+
T Consensus 120 ~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~ 199 (254)
T COG4105 120 FQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPD 199 (254)
T ss_pred ccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccc
Confidence 53 22456777777777 1 222356788899999999999999999999988
Q ss_pred ccccHHHHHHHHHHHhcc
Q 040667 127 KRIDTELLERIVLDLEGR 144 (207)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~ 144 (207)
.......+..+.+.+...
T Consensus 200 t~~~~eaL~~l~eaY~~l 217 (254)
T COG4105 200 TSAVREALARLEEAYYAL 217 (254)
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 777777777777666653
No 164
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.80 E-value=1.2e-07 Score=71.44 Aligned_cols=135 Identities=13% Similarity=0.123 Sum_probs=111.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCC----C------HH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLDPD----N------GE 66 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~------~~ 66 (207)
+|..+...+.|+++++.|++|++..-++. .++..+|..|-.+.|+++|..+..++.++... + ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 67888899999999999999999865443 36778999999999999999999999887432 2 24
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHH
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLE 135 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~ 135 (207)
+.+.++..+..+|+...|.++++++. ....+..+|.+|...|+.+.|..-|+++...-.......+.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~ 287 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVE 287 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 67889999999999999999999988 6677888999999999999999999999887654333444443
Q ss_pred HH
Q 040667 136 RI 137 (207)
Q Consensus 136 ~~ 137 (207)
.+
T Consensus 288 al 289 (518)
T KOG1941|consen 288 AL 289 (518)
T ss_pred HH
Confidence 33
No 165
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.77 E-value=1.5e-07 Score=65.31 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=85.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-----HHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHH
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNG-----EAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHV 103 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~ 103 (207)
+..=|.-++..|+|++|..-|..|+++.|..+ ..+.+.|.+..+++.++.|+..+.+++ +..++...+.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44568889999999999999999999998653 467899999999999999999999999 66778888999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 104 ALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 104 ~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
|.+...+++|+.-|.+.++.+|..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcch
Confidence 999999999999999999999983
No 166
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.74 E-value=2.5e-06 Score=74.51 Aligned_cols=90 Identities=17% Similarity=0.106 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------cHHHHHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLD-PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------YWQLWENYSHVAL 105 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~l~~~~~ 105 (207)
.+..+...|.+.|++++|.+.|++..+.. +.+...|..+...|.+.|++++|+..|.+.. +...|..+...+.
T Consensus 581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 33344444444444444444444444332 2233344444444444444444444444443 3334444444444
Q ss_pred HcCCHHHHHHHHHHHHh
Q 040667 106 DVGNIGQALEAVQMVLN 122 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~ 122 (207)
+.|++++|.+.+.++.+
T Consensus 661 k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 661 HAGDLDKAFEILQDARK 677 (1060)
T ss_pred hCCCHHHHHHHHHHHHH
Confidence 44444444444444443
No 167
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.74 E-value=6.3e-08 Score=75.31 Aligned_cols=59 Identities=17% Similarity=0.255 Sum_probs=56.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHH---HHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDG---WFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~---~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
++|..++..|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+..+++++++
T Consensus 80 NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 80 NLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999854 999999999999999999999999997
No 168
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.74 E-value=2.6e-06 Score=74.39 Aligned_cols=117 Identities=13% Similarity=0.109 Sum_probs=68.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhcC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALS-SLYPDGWFALGAAALKARDVEKALDGFTRAVQL--DPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~ 80 (207)
...|...|++++|...|+++.+.+ +.+...|..+...|.+.|++++|...|++.... .| +...|..+...+.+.|+
T Consensus 586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~ 664 (1060)
T PLN03218 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGD 664 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCC
Confidence 345566666666666666666554 234555666666666666666666666665543 23 23455555555666666
Q ss_pred HHHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 81 SKEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 81 ~~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
+++|.+.+++.. +...+..+...|.+.|++++|...|.+..
T Consensus 665 ~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 666666655555 44555555555555556555555555554
No 169
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.71 E-value=9.5e-07 Score=63.21 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWE 98 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~ 98 (207)
.+..++..|..++..|+|.+|+..|++++...|.+ +.+...+|.+++..|++.+|+..+++.+ ...+++
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y 83 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALY 83 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHH
Confidence 45678899999999999999999999999998865 5789999999999999999999999999 456788
Q ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCccccH
Q 040667 99 NYSHVALDVG-----------NIGQALEAVQMVLNMTNNKRIDT 131 (207)
Q Consensus 99 ~l~~~~~~~~-----------~~~~A~~~~~~al~~~p~~~~~~ 131 (207)
.+|.+++... ...+|+..|+..++..|+.....
T Consensus 84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~ 127 (203)
T PF13525_consen 84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE 127 (203)
T ss_dssp HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH
T ss_pred HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH
Confidence 8888876543 34589999999999999854443
No 170
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.71 E-value=7.1e-07 Score=61.05 Aligned_cols=96 Identities=22% Similarity=0.204 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC----------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARD----------VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
|+.|.+.++.....+|.+++.+.+-|.++..+.+ +++|+.-|++++.++|+..++++++|.+|...+.+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 6789999999999999999999999888877644 467888899999999999999999999998776532
Q ss_pred HHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.-. -....-|++|..+|+++...+|+
T Consensus 87 ~d~------------------~~A~~~F~kA~~~FqkAv~~~P~ 112 (186)
T PF06552_consen 87 PDT------------------AEAEEYFEKATEYFQKAVDEDPN 112 (186)
T ss_dssp --H------------------HHHHHHHHHHHHHHHHHHHH-TT
T ss_pred CCh------------------HHHHHHHHHHHHHHHHHHhcCCC
Confidence 111 11112356788888999999986
No 171
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.71 E-value=1.2e-06 Score=66.64 Aligned_cols=119 Identities=15% Similarity=0.091 Sum_probs=102.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
++.-+...|+.++|.+..+++++..-+.. ....++ ....++++.-++..++.+...|+++..+..+|..+++.+.+.
T Consensus 269 ~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~ 345 (400)
T COG3071 269 YAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWG 345 (400)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHH
Confidence 45667789999999999999999865333 222222 346788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 83 EAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 83 ~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+|..+|+.++ +..-+..+|.++.+.|+..+|.+++++++...
T Consensus 346 kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~ 391 (400)
T COG3071 346 KASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLT 391 (400)
T ss_pred HHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 9999999999 88889999999999999999999999998543
No 172
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=8.9e-07 Score=64.13 Aligned_cols=141 Identities=19% Similarity=0.170 Sum_probs=116.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHc----cCC--CCHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALS-SLYPDGWFALGAAALKARDVEKALDGFTRAVQ----LDP--DNGEAWNNIACLH 75 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~p--~~~~~~~~l~~~~ 75 (207)
+..++.-.|.|.-..+.+.+.++.+ |.++.....+|.+.++.||.+.|..+|+++-. ++. ....+..+.+.++
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 4567778889999999999999998 56777778999999999999999999995443 222 3346778889999
Q ss_pred HHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhc
Q 040667 76 MIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEG 143 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 143 (207)
.-.+++.+|...|.+++ ++.+..+.|.|++..|+..+|++..+.++...|....+-..+..+...++=
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyEL 335 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYEL 335 (366)
T ss_pred ecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHHH
Confidence 99999999999999999 788889999999999999999999999999999866555555544444433
No 173
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.70 E-value=8.3e-07 Score=75.00 Aligned_cols=120 Identities=12% Similarity=-0.017 Sum_probs=80.5
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALS--SLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-PDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~ 79 (207)
+...|...|++++|+..|++..... | +...+..+...+.+.|++++|...+...++.. +.+..++..+...|.+.|
T Consensus 296 li~~y~~~g~~~eA~~lf~~M~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G 374 (697)
T PLN03081 296 MLAGYALHGYSEEALCLYYEMRDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWG 374 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCC
Confidence 3445556666666666666655432 2 34455555566666666666666666655543 334556677777777888
Q ss_pred CHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 80 KSKEAFIAFKEAL--YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 80 ~~~~A~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
++++|.+.|++.. +...|..+...|.+.|+.++|.+.|++..+.
T Consensus 375 ~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~ 420 (697)
T PLN03081 375 RMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420 (697)
T ss_pred CHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888887776 7777888888888888888888888887653
No 174
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=3.4e-07 Score=67.45 Aligned_cols=117 Identities=15% Similarity=0.059 Sum_probs=75.0
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
....+|..|++++..-.+.+|.+-..+..+|.||+...+|..|.+.|++.-.+.|.......-.+..+++.+.+..|+..
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45556777777777777777766667777777777777777777777777777776665555555555555555555544
Q ss_pred HHHHh-------------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 88 FKEAL-------------------------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 88 ~~~~~-------------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
..... ......+.|++.++.|+++.|.+-|+.+++..
T Consensus 101 ~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs 174 (459)
T KOG4340|consen 101 AFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS 174 (459)
T ss_pred HHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhc
Confidence 33221 34455666666666666777766666666654
No 175
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.69 E-value=5.6e-08 Score=51.53 Aligned_cols=43 Identities=37% Similarity=0.635 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
+.++..+|.+|...|++++|+..|+++++.+|+++.+|..+|.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 3577888999999999999999999999999999999988875
No 176
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.68 E-value=6.5e-07 Score=75.65 Aligned_cols=123 Identities=14% Similarity=0.073 Sum_probs=86.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYETSKILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDP--DNGEAWNNIACLHMIK 78 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~ 78 (207)
+...|...|+.++|++.|++.... .| +...+..+...+.+.|..++|..+|+...+..+ -+...|..+...+.+.
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~ 475 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAP-NHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGRE 475 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC-CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhc
Confidence 445566666666666666666553 23 344455566666666777777777766654322 1234577778888888
Q ss_pred cCHHHHHHHHHHHh---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 79 KKSKEAFIAFKEAL---YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 79 ~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|++++|.+.+++.- +..+|..+...+...|+++.|...+++++++.|+
T Consensus 476 G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 476 GLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 88888888887765 6777888888888899999999999999888886
No 177
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=1.8e-07 Score=68.89 Aligned_cols=123 Identities=16% Similarity=0.104 Sum_probs=105.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc----------------------
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ---------------------- 59 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------------------- 59 (207)
.||.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|+........
T Consensus 49 lLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl 128 (459)
T KOG4340|consen 49 LLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDL 128 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccC
Confidence 3789999999999999999999999999888888888888888888888776554332
Q ss_pred --------cCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 60 --------LDP--DNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 60 --------~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.-| +......+.|.+.++.|++++|++-|+.++ .+.+-++++.++++.|++..|.++..+.++..
T Consensus 129 ~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG 208 (459)
T KOG4340|consen 129 PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERG 208 (459)
T ss_pred cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhh
Confidence 113 345678899999999999999999999999 77888999999999999999999988887654
No 178
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=1.3e-06 Score=65.93 Aligned_cols=124 Identities=15% Similarity=0.143 Sum_probs=99.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC------------CCC------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD------------PDN------ 64 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------p~~------ 64 (207)
+|.+++..|+|++|+..|+-+...+--+...+.+++.|++-+|.|.+|.....++-..- -++
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 68899999999999999999888665577889999999999999999998877753210 000
Q ss_pred --------HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 65 --------GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 65 --------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+-...++.+++..-.|.+|++.|.+.+ ...+-.+++.||.++.-++-+-+.+.-.++..|+
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 1123445666777788999999999999 3345567899999999999999999999999998
No 179
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=1.3e-06 Score=69.57 Aligned_cols=119 Identities=18% Similarity=0.067 Sum_probs=99.7
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
+...++|++|.+...+.+...|++..+....-.++++.++|++|+...++-......+. ..+..+.|.++++..++|+.
T Consensus 22 ~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 22 HGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred hccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHHcccHHHHHH
Confidence 45678999999999999999999999999999999999999999976655333222222 22678999999999999999
Q ss_pred HHHHHh--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 87 AFKEAL--YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 87 ~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++.+- +..+....|.+++++|+|++|...|+...+.+.+
T Consensus 101 ~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d 142 (652)
T KOG2376|consen 101 TLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD 142 (652)
T ss_pred HHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence 999443 6668899999999999999999999999887654
No 180
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.60 E-value=3.5e-06 Score=55.82 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWEN 99 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~ 99 (207)
+..++.-|...++.|+|++|++.|+......|.. ..+...++.+|++.+++++|+..+++.+ -..+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 4567888999999999999999999999888754 5788999999999999999999999999 4456777
Q ss_pred HHHHHHHcCC
Q 040667 100 YSHVALDVGN 109 (207)
Q Consensus 100 l~~~~~~~~~ 109 (207)
.|.+++....
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 8877777544
No 181
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.52 E-value=1.2e-07 Score=47.14 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=15.4
Q ss_pred HHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 54 FTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 54 ~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
|+++++++|+++.+|+++|.+|...|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence 3444555555555555555555555554444
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.52 E-value=1.2e-07 Score=47.06 Aligned_cols=33 Identities=21% Similarity=0.319 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Q 040667 19 LWEAAMALSSLYPDGWFALGAAALKARDVEKAL 51 (207)
Q Consensus 19 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~ 51 (207)
+|+++|+.+|+++.+|+++|.++...|++++|+
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 478999999999999999999999999999986
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.49 E-value=1.6e-05 Score=54.83 Aligned_cols=120 Identities=9% Similarity=0.054 Sum_probs=101.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ-LDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
...+.=|.+....-..+.++..|. ..-.+.+|.....+|++.+|...|++++. +...++.....++.+.+..+++.+|
T Consensus 65 a~~q~ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 65 ALQQKLDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHHhcChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 334444667777777777777774 44567899999999999999999999886 3557888999999999999999999
Q ss_pred HHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 85 FIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 85 ~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...+++.. .+.....+|..+...|++.+|...|+.++...|+
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg 192 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG 192 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence 99999988 6667788899999999999999999999999987
No 184
>PLN03077 Protein ECB2; Provisional
Probab=98.49 E-value=4.6e-06 Score=72.15 Aligned_cols=123 Identities=14% Similarity=0.075 Sum_probs=77.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYETSKILWEAAMAL--SSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDP--DNGEAWNNIACLHMIK 78 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~ 78 (207)
+...|...|+.++|+.+|++.... .| +...+..+-..+.+.|.+++|..+|+......+ -+...|..+..++.+.
T Consensus 560 lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 560 LLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 344555666666666666666553 34 233344444556666777777777766553222 1335666677777777
Q ss_pred cCHHHHHHHHHHHh---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 79 KKSKEAFIAFKEAL---YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 79 ~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|++++|.+.+++.- +..+|..+-..+...|+.+.+....+++++++|+
T Consensus 639 G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 639 GKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 77777777777653 6666766666666677777777777777777776
No 185
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.46 E-value=9e-06 Score=61.11 Aligned_cols=120 Identities=13% Similarity=0.192 Sum_probs=101.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALK-ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
....+..+.|...|.+|....+.....|...|.+.+. .++.+.|..+|+.++...|.+...|......+...++.+.|.
T Consensus 11 ~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR 90 (280)
T PF05843_consen 11 MRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNAR 90 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHH
Confidence 3445568899999999997666678899999999777 566666999999999999999999999999999999999999
Q ss_pred HHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 86 IAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 86 ~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|++++ ...+|..+...-...|+++....+..++.+..|.
T Consensus 91 ~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 91 ALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 9999999 2358888899999999999999999999998886
No 186
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.46 E-value=5.1e-05 Score=58.02 Aligned_cols=124 Identities=18% Similarity=0.105 Sum_probs=101.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC---------------------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD--------------------- 61 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 61 (207)
.+......|+++.|..-..++++..|.++.+....-.+|.+.|+|.+......+.-+..
T Consensus 159 rarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q 238 (400)
T COG3071 159 RARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ 238 (400)
T ss_pred HHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999999999999999988877766543221
Q ss_pred ---C------------------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----------------------------
Q 040667 62 ---P------------------DNGEAWNNIACLHMIKKKSKEAFIAFKEAL---------------------------- 92 (207)
Q Consensus 62 ---p------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------------------- 92 (207)
+ .++.+...++.-+...|++++|.+..+.++
T Consensus 239 ~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e 318 (400)
T COG3071 239 ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAE 318 (400)
T ss_pred HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHH
Confidence 1 123444555666778899999999888877
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 --------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
++.++..+|.++++.+.+.+|..+++.+++..|+
T Consensus 319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 7788999999999999999999999999999985
No 187
>PLN03077 Protein ECB2; Provisional
Probab=98.44 E-value=1.7e-05 Score=68.74 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=99.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--DPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~ 80 (207)
|-..|.+.|+.++|...|++. +.+..+|..+...|.+.|+.++|+..|++.... .|+.. .+..+-..+.+.|.
T Consensus 530 Li~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-T~~~ll~a~~~~g~ 604 (857)
T PLN03077 530 LLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-TFISLLCACSRSGM 604 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-cHHHHHHHHhhcCh
Confidence 446788899999999999886 457889999999999999999999999987764 45544 45556667889999
Q ss_pred HHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 81 SKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 81 ~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++|..+|+... +...|..+..++.+.|++++|.+.+++. ...|+
T Consensus 605 v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd 656 (857)
T PLN03077 605 VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD 656 (857)
T ss_pred HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC
Confidence 999999999876 6678999999999999999999999875 45665
No 188
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.42 E-value=6.8e-06 Score=66.70 Aligned_cols=120 Identities=13% Similarity=0.088 Sum_probs=85.8
Q ss_pred hCCCChHHH--HHHHHHHHHcc---CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC--------HHHHHHHHHHHh
Q 040667 26 LSSLYPDGW--FALGAAALKAR---DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK--------SKEAFIAFKEAL 92 (207)
Q Consensus 26 ~~p~~~~~~--~~l~~~~~~~~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~ 92 (207)
..|.+..+| +..|.-+...+ ++..|+..|+++++++|+++.++-.++.++..... ...+.....+++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 346666665 45666665544 48899999999999999999999998888765432 344555555544
Q ss_pred -------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ccccHHHHHHHHHHHhccc
Q 040667 93 -------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN--KRIDTELLERIVLDLEGRT 145 (207)
Q Consensus 93 -------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~~~~~ 145 (207)
...++..+|..+...|++++|...+++++.++|+ .+...+.+....|+.++++
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~ 473 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAA 473 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 5577888899999999999999999999999996 2222333344444444443
No 189
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.42 E-value=4e-05 Score=54.74 Aligned_cols=139 Identities=12% Similarity=0.087 Sum_probs=96.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHc-cCHHHHHHHHHHHHccCCCC---H---HHHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDG------WFALGAAALKA-RDVEKALDGFTRAVQLDPDN---G---EAWNNIA 72 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~---~---~~~~~l~ 72 (207)
..+...+..+|+.++++++++.-+.... +..+|.+|... .++++|+.+|+++-+..... . ..+...+
T Consensus 82 ~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA 161 (288)
T KOG1586|consen 82 NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVA 161 (288)
T ss_pred HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHH
Confidence 3456678889999999998887654433 34788888754 88999999999987764322 1 2334445
Q ss_pred HHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc--cHHHHHHHH
Q 040667 73 CLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI--DTELLERIV 138 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~~~~~~~ 138 (207)
..-..+++|.+|+..|++.. --..++.-|.|++...+.-.+...+++..+++|.... ....+..++
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 55567889999999998877 1223455677888878888888899999999998433 333444555
Q ss_pred HHHhcc
Q 040667 139 LDLEGR 144 (207)
Q Consensus 139 ~~~~~~ 144 (207)
..+++.
T Consensus 242 ~aieE~ 247 (288)
T KOG1586|consen 242 DAIEEQ 247 (288)
T ss_pred HHHhhh
Confidence 544443
No 190
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.41 E-value=1.4e-05 Score=64.37 Aligned_cols=116 Identities=19% Similarity=0.110 Sum_probs=99.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhcCHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~ 85 (207)
..+.+.|...+.......|+.....+..|.++...|+.++|++.|++++...... .-.++.+++++..+++|++|.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 4567889999999999999999999999999999999999999999998644333 245788999999999999999
Q ss_pred HHHHHHh------cHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHhcCC
Q 040667 86 IAFKEAL------YWQLWENYSHVALDVGNI-------GQALEAVQMVLNMTN 125 (207)
Q Consensus 86 ~~~~~~~------~~~~~~~l~~~~~~~~~~-------~~A~~~~~~al~~~p 125 (207)
.+|.+.. .....+..|.|+...++. ++|...+.++-.+..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 9999999 445567778999999999 888888888876554
No 191
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.3e-06 Score=62.26 Aligned_cols=90 Identities=17% Similarity=0.221 Sum_probs=83.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNI 110 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 110 (207)
.-|..++....|..|+..|.+++.++|..+..|.+.+.++++..+++.....+++++ .....+.+|.+......+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 347777888899999999999999999999999999999999999999999999999 677899999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q 040667 111 GQALEAVQMVLNMTN 125 (207)
Q Consensus 111 ~~A~~~~~~al~~~p 125 (207)
++|+..+.++..+..
T Consensus 95 ~eaI~~Lqra~sl~r 109 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLR 109 (284)
T ss_pred cHHHHHHHHHHHHHh
Confidence 999999999976553
No 192
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.41 E-value=2.3e-05 Score=65.38 Aligned_cols=122 Identities=7% Similarity=-0.056 Sum_probs=107.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
....++|.+|.....+.++.+|+...+...-|.+++++|+.++|...++..-...+++......+-.+|..++.+++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 35678999999999999999999999999999999999999999988888777788888899999999999999999999
Q ss_pred HHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 87 AFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 87 ~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
.|++++ .......+=.+|.+.++|.+-.+.--+..+..|+.+
T Consensus 99 ~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~ 144 (932)
T KOG2053|consen 99 LYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRA 144 (932)
T ss_pred HHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 999999 555666677788889999877777777777888733
No 193
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.38 E-value=7.6e-07 Score=69.33 Aligned_cols=90 Identities=20% Similarity=0.191 Sum_probs=69.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
-|..++.-+.|+.|+..|.++++++|+++..+.+.+..+.+.+++..|+.-+.++++++|....+|+..|.+.+.++++.
T Consensus 10 ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~ 89 (476)
T KOG0376|consen 10 EANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK 89 (476)
T ss_pred HHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence 35566677778888888888888888888777778888888888888888888888888888777777777777777777
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|...|++..
T Consensus 90 ~A~~~l~~~~ 99 (476)
T KOG0376|consen 90 KALLDLEKVK 99 (476)
T ss_pred HHHHHHHHhh
Confidence 7776666555
No 194
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.38 E-value=3e-06 Score=59.79 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVAL 105 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~ 105 (207)
...++..|..|-.+|-+.-|..-|.+++.+.|+.+.+++.+|.-+...|+|+.|.+.|...+ ..-+..+.|..+.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~Y 144 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 144 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeee
Confidence 45678899999999999999999999999999999999999999999999999999999998 5557788888899
Q ss_pred HcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHH
Q 040667 106 DVGNIGQALEAVQMVLNMTNNKRIDTELLERIVL 139 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 139 (207)
-.|++.-|.+-+.+-.+.+|+++...-.++....
T Consensus 145 Y~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~ 178 (297)
T COG4785 145 YGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQ 178 (297)
T ss_pred ecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999997766666555443
No 195
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=1.8e-05 Score=62.04 Aligned_cols=118 Identities=16% Similarity=0.242 Sum_probs=98.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
....+...|.+.+-.|+...|.+- .+.....+-.++++++.....|++.++.+|.+..+|...|..-..+|+.+.|...
T Consensus 415 IRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 415 IRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred HHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 345566777777777777777433 3344455667889999999999999999999999999999999999999999999
Q ss_pred HHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 88 FKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 88 ~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|+-++ ...+|-.+...-...|.++.|...|++.|+..+.
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h 539 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQH 539 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhccc
Confidence 99999 4456777778888999999999999999999886
No 196
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.36 E-value=2.1e-05 Score=68.48 Aligned_cols=123 Identities=16% Similarity=0.070 Sum_probs=86.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP-----DGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNNI 71 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l 71 (207)
+|..+...|++++|..++++++...|... .+...+|.++...|++++|...+.+++...... ..++..+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 35566778888888888888877544322 244567778888888888888888887653321 2345677
Q ss_pred HHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 72 ACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
|.++...|++++|...+++++ ...++..+|.++...|++++|...+.+++....
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~ 604 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLS 604 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhh
Confidence 888888888888888888777 012344667777788888888888888776543
No 197
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.34 E-value=1.4e-06 Score=46.03 Aligned_cols=38 Identities=32% Similarity=0.437 Sum_probs=35.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGA 39 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 39 (207)
.+|..|...|++++|++.|+++++.+|+++.+|..+|.
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 47899999999999999999999999999999998875
No 198
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.9e-06 Score=62.12 Aligned_cols=90 Identities=18% Similarity=0.143 Sum_probs=82.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP----DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 78 (207)
-|+-|+..++|..|+..|.+.|...-.++ ..|.+.+.+.+.+|+|..|+.-+.+++.++|.+..+++.=+.|++.+
T Consensus 87 eGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eL 166 (390)
T KOG0551|consen 87 EGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLEL 166 (390)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHH
Confidence 47889999999999999999999754443 46789999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHh
Q 040667 79 KKSKEAFIAFKEAL 92 (207)
Q Consensus 79 ~~~~~A~~~~~~~~ 92 (207)
.++.+|..+++..+
T Consensus 167 e~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 167 ERFAEAVNWCEEGL 180 (390)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999999887
No 199
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.33 E-value=1e-06 Score=43.77 Aligned_cols=34 Identities=41% Similarity=0.767 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
+.+|+.+|.++..+|++++|+..|+++++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 3578888999999999999999999999888863
No 200
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.32 E-value=7.9e-05 Score=53.08 Aligned_cols=123 Identities=26% Similarity=0.248 Sum_probs=76.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHH-HHHHccCHHHHHHHHHHHHccCC---CCHHHHHHHHHHHHHhc
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGA-AALKARDVEKALDGFTRAVQLDP---DNGEAWNNIACLHMIKK 79 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~ 79 (207)
+......+++..++..+.+++...+.........+. ++...|+++.|...+.+++...| .........+..+...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (291)
T COG0457 102 GLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181 (291)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhc
Confidence 444555566666666666666665555444444444 66667777777777777666555 23444555555566666
Q ss_pred CHHHHHHHHHHHh----c--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 80 KSKEAFIAFKEAL----Y--WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 80 ~~~~A~~~~~~~~----~--~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++.++..+.+++ . ...+..++.++...+.+++|...+..++...|.
T Consensus 182 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred CHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 6777777766666 2 344666666666666777777777777766664
No 201
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.32 E-value=8.3e-05 Score=52.96 Aligned_cols=121 Identities=30% Similarity=0.422 Sum_probs=107.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-CHHHHHHHHHHHHHhcCH
Q 040667 6 SAYNRGGYETSKILWEAAMALSS---LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-NGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~ 81 (207)
.+...|+++.|...+.+++...| .........+..+...++++.++..+.+++...+. ....+..++..+...+.+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 67889999999999999988776 35566677777788999999999999999999999 799999999999999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|+..+.+++ ....+...+..+...+.++++...+.+++...|.
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99999999999 2467788888888778899999999999999985
No 202
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.32 E-value=5.2e-07 Score=67.40 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=84.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
.+...+..|++++|+++|..++.++|.....+...+.++.+++++..|+.-+..++.++|+...-+...|.+...+|++.
T Consensus 120 ~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e 199 (377)
T KOG1308|consen 120 QASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWE 199 (377)
T ss_pred HHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchH
Confidence 35567788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 040667 83 EAFIAFKEAL 92 (207)
Q Consensus 83 ~A~~~~~~~~ 92 (207)
+|...+..++
T Consensus 200 ~aa~dl~~a~ 209 (377)
T KOG1308|consen 200 EAAHDLALAC 209 (377)
T ss_pred HHHHHHHHHH
Confidence 9999999887
No 203
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.31 E-value=2.5e-05 Score=68.06 Aligned_cols=125 Identities=14% Similarity=0.065 Sum_probs=101.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--------CHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY------PDGWFALGAAALKARDVEKALDGFTRAVQLDPD--------NGEA 67 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--------~~~~ 67 (207)
.+|..+...|++++|...+.+++...... ..++..+|.++...|++++|...+++++.+... ....
T Consensus 496 ~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 575 (903)
T PRK04841 496 VLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFL 575 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 36778889999999999999999764322 235567899999999999999999998876321 2334
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+..+|.++...|++++|...+.+++ ....+..+|.++...|++++|...+.++..+.+.
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~ 644 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGN 644 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 6678999999999999999999987 2445667899999999999999999999876443
No 204
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.29 E-value=2e-06 Score=42.63 Aligned_cols=33 Identities=36% Similarity=0.786 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
.+++.+|.+++..|++++|+..|++++.++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567888888888888888888888888888864
No 205
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.25 E-value=3.4e-06 Score=41.85 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 94 WQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.+|+++|.++...|++++|+.+|+++++++|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 357899999999999999999999999999996
No 206
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=0.00013 Score=53.19 Aligned_cols=123 Identities=15% Similarity=0.107 Sum_probs=95.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH----hc
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI----KK 79 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~----~~ 79 (207)
|..+...|++++|++..... .+.++...--.++.++.+++-|...+++..+++.+. ....++.++.+ .+
T Consensus 115 a~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~gge 187 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGE 187 (299)
T ss_pred hHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccch
Confidence 45677888999999887762 344555556678889999999999999988877543 34445554443 34
Q ss_pred CHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHH
Q 040667 80 KSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTEL 133 (207)
Q Consensus 80 ~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 133 (207)
.+.+|.-+|+..- .+......+.|++.+|++++|...++.++..+++++..+..
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 5889999998887 78889999999999999999999999999999885444333
No 207
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.7e-05 Score=55.34 Aligned_cols=108 Identities=18% Similarity=0.115 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCCH----------HHHHHHHHHHHHhcCHHHHHHHHHHHh--
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQL--------DPDNG----------EAWNNIACLHMIKKKSKEAFIAFKEAL-- 92 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~~~-- 92 (207)
++..-|+-+++.|+|.+|...|+.|+.. .|..+ ..+.|++.|+...|+|-++++.+...+
T Consensus 180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~ 259 (329)
T KOG0545|consen 180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH 259 (329)
T ss_pred HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence 4556788889999999999999888742 34433 467889999999999999999999988
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHhc
Q 040667 93 ---YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLEG 143 (207)
Q Consensus 93 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 143 (207)
+..+++..|.++...=+..+|..-+.++++++|. -...+.+-+..++.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps---lasvVsrElr~le~ 310 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS---LASVVSRELRLLEN 310 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh---hHHHHHHHHHHHHH
Confidence 8889999999999999999999999999999996 33344444444433
No 208
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=2.7e-05 Score=56.02 Aligned_cols=91 Identities=16% Similarity=0.176 Sum_probs=82.1
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHh--------CCCCh----------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMAL--------SSLYP----------DGWFALGAAALKARDVEKALDGFTRAVQLDPD 63 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 63 (207)
.-|+-++..|+|.+|...|+.|+.. .|..+ ..+.+++.|+...|+|-++++.....+...|.
T Consensus 183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~ 262 (329)
T KOG0545|consen 183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG 262 (329)
T ss_pred HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc
Confidence 3578899999999999999999864 45554 35678999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 64 NGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 64 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+..+++..|.++...=+..+|...|.+++
T Consensus 263 nvKA~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 263 NVKAYFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred hHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999998
No 209
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=6e-05 Score=59.16 Aligned_cols=119 Identities=15% Similarity=0.226 Sum_probs=99.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
..++++..|...|++|+..+..+...|...+.+-++......|...+.+|+.+-|.-...|+.....--.+|+...|.+.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 45678888999999999999889999999999999999999999999999999998888899888888888999888888
Q ss_pred HHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 88 FKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 88 ~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
|++=+ +..+|......-.+-++.+.|...|++-+-..|+
T Consensus 164 ferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~ 206 (677)
T KOG1915|consen 164 FERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPK 206 (677)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheeccc
Confidence 88877 5666666666666666777777777777666665
No 210
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.22 E-value=4.6e-05 Score=51.50 Aligned_cols=89 Identities=31% Similarity=0.306 Sum_probs=68.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--------h--------------HHHHHHHHHHHHccCHHHHHHHHHHHHccC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLY--------P--------------DGWFALGAAALKARDVEKALDGFTRAVQLD 61 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~--------~--------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 61 (207)
|......++.+.++..+.+++...... . .+...++..+...|++++|+..+++++..+
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d 92 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD 92 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 334456789999999999999875321 1 133456777888999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 62 PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 62 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
|.+..+|..+..++...|++.+|+..|+++.
T Consensus 93 P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 93 PYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999998764
No 211
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.21 E-value=1.5e-05 Score=60.49 Aligned_cols=123 Identities=18% Similarity=0.211 Sum_probs=100.8
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH------HHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY-----PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG------EAWNN 70 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~------~~~~~ 70 (207)
+|+..+....++.+++.+.+..+...... ......+|..+.-++.|+++++.|++++....++. .++..
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~ 167 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS 167 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence 56666777777888888877777654322 25667789999999999999999999998765432 57889
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 71 IACLHMIKKKSKEAFIAFKEAL---------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+|..+-.+.++++|.-+..++. ...+++.++..+...|++-+|.++.+++.++.
T Consensus 168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 9999999999999999988887 55678889999999999999999999998765
No 212
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.17 E-value=6.7e-06 Score=40.66 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|+.+|.++...|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 57889999999999999999999999999986
No 213
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.15 E-value=0.00037 Score=48.58 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=78.4
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHH
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL----YWQLWENYSHVALD 106 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~ 106 (207)
-..++..+...+++++|+..++.++....+. .-+-.+++.+...+|.+++|+..+.... ........|.++..
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~ 171 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLA 171 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence 3467888899999999999999998654432 3467889999999999999999988776 44457778999999
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 040667 107 VGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~ 126 (207)
.|+.++|+..|.++++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 99999999999999998743
No 214
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.10 E-value=5.5e-06 Score=64.69 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=88.7
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNI 110 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~ 110 (207)
.-+...+.-++|+.|+..|.|+++++|+++..+.+.+.++.+.+++..|+..+.+++ ....|+..|.+.+..+.+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 346667788999999999999999999999999999999999999999999999999 677889999999999999
Q ss_pred HHHHHHHHHHHhcCCCccccHHHH
Q 040667 111 GQALEAVQMVLNMTNNKRIDTELL 134 (207)
Q Consensus 111 ~~A~~~~~~al~~~p~~~~~~~~~ 134 (207)
.+|...|+....+.|+.......+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHH
Confidence 999999999999999855444433
No 215
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=0.00012 Score=55.25 Aligned_cols=114 Identities=12% Similarity=-0.025 Sum_probs=81.2
Q ss_pred HhcCCHHHHHHHHHHHHHh-CCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 8 YNRGGYETSKILWEAAMAL-SSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~-~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
+-.|+.+.-...+++.+.. +|+- ...+-.++..+...|-|++|.+..+++++++|.+.-+....+.++...|++.+
T Consensus 148 fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Ke 227 (491)
T KOG2610|consen 148 FYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKE 227 (491)
T ss_pred HhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhh
Confidence 3444444444444444444 3333 22233566777888999999999999999999998888889999999999999
Q ss_pred HHHHHHHHh---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 84 AFIAFKEAL---------YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 84 A~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
+.+...+.- ...-|...+.++...+.|+.|.+.|.+-+
T Consensus 228 g~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 228 GKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 998877665 22224445777888899999999987654
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=98.06 E-value=0.00041 Score=53.71 Aligned_cols=126 Identities=15% Similarity=0.135 Sum_probs=91.5
Q ss_pred hHHHHHh---cCCHHHHHHHHHHH-HHhCCCChHHHHHHHHHHHH---------ccCHHHHHHHHHHHHccCCCCHHHHH
Q 040667 3 LARSAYN---RGGYETSKILWEAA-MALSSLYPDGWFALGAAALK---------ARDVEKALDGFTRAVQLDPDNGEAWN 69 (207)
Q Consensus 3 la~~~~~---~~~~~~A~~~~~~a-l~~~p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~ 69 (207)
.|.++.. .|+.++|+..+..+ ....+.+++.+..+|.+|-. ....++|+..|+++.+++|+. ..-.
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GI 263 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGI 263 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchH
Confidence 4556666 89999999999994 45566788999999999843 234789999999999999754 3334
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccc
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKRI 129 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 129 (207)
|++.++...|...+.....++.. +....-.++.+..-.|+++.|.+.+++++++.|..+.
T Consensus 264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 55556666555332221111111 6666677888889999999999999999999987544
No 217
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.06 E-value=0.00016 Score=63.29 Aligned_cols=122 Identities=16% Similarity=0.203 Sum_probs=94.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC--CHHHHHHHHHHHHHhcC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD--NGEAWNNIACLHMIKKK 80 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~~~ 80 (207)
|...|...+.+++|.++++..++........|..+|..+++.++-+.|...+.+|+.--|. +.......+...++.|+
T Consensus 1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence 4455666777788888888888777777777888888888888778888888888877776 66777777888888888
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.+.+...|+..+ ...+|..+...-.+.|+.+.....|++++.+.
T Consensus 1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 888887777777 56778877777778888888888888887765
No 218
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.04 E-value=0.0011 Score=48.27 Aligned_cols=123 Identities=19% Similarity=0.225 Sum_probs=98.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHc--------cCHHHHHHHHHHHHccCCCCH------
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKA--------RDVEKALDGFTRAVQLDPDNG------ 65 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~--------~~~~~A~~~~~~a~~~~p~~~------ 65 (207)
++..++..++|+.|+...++-+..+|.++ .+++..|.+++.. .-..+|+..|+..+..-|++.
T Consensus 77 l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~ 156 (254)
T COG4105 77 LAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK 156 (254)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 67889999999999999999999998765 4667778877543 224678888999999999863
Q ss_pred -----------HHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C
Q 040667 66 -----------EAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT-N 125 (207)
Q Consensus 66 -----------~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p 125 (207)
.--..+|..|.+.|.+-.|+.-++..+ ...++..+..+|..+|-.++|...-. .+..+ |
T Consensus 157 ~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p 235 (254)
T COG4105 157 ARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYP 235 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCC
Confidence 112456888999999999999999999 66788889999999999999877664 55544 4
Q ss_pred C
Q 040667 126 N 126 (207)
Q Consensus 126 ~ 126 (207)
+
T Consensus 236 ~ 236 (254)
T COG4105 236 D 236 (254)
T ss_pred C
Confidence 4
No 219
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=62.90 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=83.2
Q ss_pred HHHHHhcCCHHHHHHHHHHH-HHhCCC--------ChHHHHHHHHHHHHccCHHHHHHHHHHHHc---------cCC---
Q 040667 4 ARSAYNRGGYETSKILWEAA-MALSSL--------YPDGWFALGAAALKARDVEKALDGFTRAVQ---------LDP--- 62 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~a-l~~~p~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~---------~~p--- 62 (207)
++.++..|||.+|.+.+... +...|. ...+|+++|.+++++|.|.-+..+|.+++. +.|
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 45678889999999887543 333333 223578999999999999999999999995 111
Q ss_pred ------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHH
Q 040667 63 ------DNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALD 106 (207)
Q Consensus 63 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~ 106 (207)
..-.+.++.|..|...|++-.|.++|.+++ ++.+|..++.|++-
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM 381 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 234789999999999999999999999999 99999999998764
No 220
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=5.1e-05 Score=59.74 Aligned_cols=120 Identities=13% Similarity=0.095 Sum_probs=97.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHH-ccCCC--------CHHHHHHHHHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAV-QLDPD--------NGEAWNNIACLHMI 77 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~--------~~~~~~~l~~~~~~ 77 (207)
+....+...+..-.+-++.+..+.+.+.+..+..++..|+|.+|.+.+...- .-.|. ...+|+++|.+++.
T Consensus 216 llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~ 295 (696)
T KOG2471|consen 216 LLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ 295 (696)
T ss_pred HHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee
Confidence 3455556666666666667777888899999999999999999999886532 22232 23468999999999
Q ss_pred hcCHHHHHHHHHHHh-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 78 KKKSKEAFIAFKEAL-----------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+.|.-+..+|.+++ ...+.++.|..|...|+.-.|.++|.++....-.
T Consensus 296 ~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 296 LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 999999999999998 6788999999999999999999999999887654
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=0.00094 Score=49.57 Aligned_cols=123 Identities=15% Similarity=0.048 Sum_probs=88.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhcCHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN-GEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~ 82 (207)
+......|++.+|...|..++...|++..+...++.|+...|+.+.|...+...-...... ..........+.......
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999999999999999999999999999999999999887532222111 111111112333333333
Q ss_pred HHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+....-+++- +..+-+.++..+...|+.+.|.+.+-..++.+..
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3333322222 8888999999999999999999999988888765
No 222
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.99 E-value=5.4e-05 Score=52.00 Aligned_cols=62 Identities=26% Similarity=0.275 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC-----------HHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKARD-----------VEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
-+++|+.-|++++.++|+..++++.+|.++...+. |++|..+|+++...+|++...+..|..
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~ 122 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEM 122 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 46789999999999999999999999999976653 788999999999999998766655543
No 223
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.99 E-value=0.00031 Score=55.64 Aligned_cols=113 Identities=15% Similarity=0.125 Sum_probs=88.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-------C----------------C
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-------P----------------D 63 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p----------------~ 63 (207)
.....+...-++.-++|++++|++++++..++.-. ..-..+|.++|+++++.. . .
T Consensus 178 AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt 255 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDT 255 (539)
T ss_pred HHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhcccc
Confidence 44567899999999999999999999998887522 223456666666665421 0 0
Q ss_pred --CHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 64 --NGEAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 64 --~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
...+...++.|..++|+.+||++.++..+ ...+..++..++...+.+.++...+.+.=
T Consensus 256 ~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 256 NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 02456788999999999999999999998 55689999999999999999998888753
No 224
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.95 E-value=0.00046 Score=51.97 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHh-----cHHHHHHHHHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI-KKKSKEAFIAFKEAL-----YWQLWENYSHVAL 105 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~ 105 (207)
.+|..+.....+.+..+.|..+|.+|....+....+|...|.+.+. .++.+.|..+|+.++ +...|..+...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3677788888888889999999999997777788999999999777 556666999999999 8889999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 040667 106 DVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~~p~ 126 (207)
..|+.+.|...|++++..-|.
T Consensus 82 ~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 82 KLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HTT-HHHHHHHHHHHCCTSSC
T ss_pred HhCcHHHHHHHHHHHHHhcCc
Confidence 999999999999999987765
No 225
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.93 E-value=1.8e-05 Score=39.08 Aligned_cols=32 Identities=34% Similarity=0.660 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPD 63 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 63 (207)
.+|+.+|.++..+|++++|+..|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46778888888888888888888888888774
No 226
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.90 E-value=0.00086 Score=48.49 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=73.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccC-----CCCHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLD-----PDNGEAWNNIA 72 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-----p~~~~~~~~l~ 72 (207)
+..|...++|++|..++.++.+...++. .++-..+...-.+..+.++..+|+++..+- |+....-...+
T Consensus 38 AvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 4556677889999999999887655442 234456667777788888888888887652 33222222222
Q ss_pred HHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 73 CLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
-=..+..++++|+..|++++ ....+...+.++.+...+++|-..+.+-
T Consensus 118 ak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 118 AKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 22345556777777777777 3344555566666666666666655543
No 227
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=97.83 E-value=0.00062 Score=43.06 Aligned_cols=90 Identities=21% Similarity=0.174 Sum_probs=66.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHccC-----------HHHHHHHHHHHHccCCCCHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPD---GWFALGAAALKARD-----------VEKALDGFTRAVQLDPDNGEAW 68 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~---~~~~l~~~~~~~~~-----------~~~A~~~~~~a~~~~p~~~~~~ 68 (207)
.|..++..||+.+|++..++.+..++++.. .+..-|.++.++.. .-.|++.|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 578899999999999999999999988774 34456777755432 3457888888888888887777
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+.+|.-+-...-|.+++.-.++++
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHh
Confidence 777766555555666665555544
No 228
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.82 E-value=0.0034 Score=46.03 Aligned_cols=120 Identities=16% Similarity=0.103 Sum_probs=93.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK 80 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~ 80 (207)
.++....+++-|.+.+++...++. ...+..|+..+.+ -+.+..|.-+|+..-+..|-.+......+.|+..+++
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC
Confidence 456677788889999998887764 3334445555543 3568999999999888788888999999999999999
Q ss_pred HHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHH-HHHHhcCCC
Q 040667 81 SKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAV-QMVLNMTNN 126 (207)
Q Consensus 81 ~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~-~~al~~~p~ 126 (207)
|++|...++.++ ++..+.++..+....|...++..-+ .+.....|.
T Consensus 223 ~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 223 YEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 999999999999 8888999988888888876655544 444455565
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.81 E-value=0.00099 Score=50.43 Aligned_cols=116 Identities=12% Similarity=-0.061 Sum_probs=99.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc-CCCC---HHHHHHHHHHHHHhcCH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL-DPDN---GEAWNNIACLHMIKKKS 81 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~p~~---~~~~~~l~~~~~~~~~~ 81 (207)
..+..|++.+|...+++.++..|.+.-++..--..++.+|+.......+++.+-. +|+- +.+.-.++..+...|-|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred HhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 4567889999999999999999999999888889999999999999999998876 5444 56667788889999999
Q ss_pred HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 82 KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 82 ~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
++|.+.-++++ +..+.+..+.++.-.|++.++.++..+.-
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 99999999999 66777888888889999999998876643
No 230
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.78 E-value=0.0042 Score=42.21 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=48.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
-...++.+++...+...-...|..+..-..-|.+++..|+|.+|+..++.+....|..+.+--.++.|++.+++.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 344556666666666666666666666666666666667777777776666666666666666666666666664
No 231
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.78 E-value=6.3e-05 Score=37.09 Aligned_cols=32 Identities=19% Similarity=0.359 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+|+.+|.++...|++++|..+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57888999999999999999999999998884
No 232
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.00097 Score=47.89 Aligned_cols=120 Identities=13% Similarity=0.107 Sum_probs=75.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC-----C-ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHH------HHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSS-----L-YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEA------WNNIAC 73 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p-----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~------~~~l~~ 73 (207)
.|-..++|..|=..|.++-+.+- + ....+...+.|| +..+.++|+..+++++++..+.++. +..+|.
T Consensus 43 ~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaE 121 (288)
T KOG1586|consen 43 MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAE 121 (288)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHH
Confidence 33344455555555544444321 1 122334444444 3448888888888888876554433 346777
Q ss_pred HHHHh-cCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 74 LHMIK-KKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 74 ~~~~~-~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+|..- .+++.|+.+|+++- .-..+...+......++|.+|+..|+++....-+
T Consensus 122 iyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 122 IYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 77654 78889999998887 2234555667777888999999999888765443
No 233
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.74 E-value=0.0039 Score=50.44 Aligned_cols=115 Identities=16% Similarity=0.075 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCC--hHHH-----HHHHHH-H--H--HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLY--PDGW-----FALGAA-A--L--KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~--~~~~-----~~l~~~-~--~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
.||-+.++.++.++.+. ++- +.+- +..+.. + . .....+.|.+.+.......|+.+-.....|.++..
T Consensus 201 ~gdR~~GL~~L~~~~~~-~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~ 279 (468)
T PF10300_consen 201 SGDRELGLRLLWEASKS-ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL 279 (468)
T ss_pred CCcHHHHHHHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 57889999999998773 222 1111 111111 1 1 24567889999999999999999999999999999
Q ss_pred hcCHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 78 KKKSKEAFIAFKEAL---------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.|+.++|++.|++++ ....++.++.+++...+|++|..++.+..+.+.
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 999999999999988 556789999999999999999999999998654
No 234
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.69 E-value=0.0021 Score=41.13 Aligned_cols=81 Identities=14% Similarity=0.085 Sum_probs=45.9
Q ss_pred HccCHHHHHHHHHHHHccCCCC------------HHHHHHHHHHHHHhcCHHHHHHHHHHHh----------------cH
Q 040667 43 KARDVEKALDGFTRAVQLDPDN------------GEAWNNIACLHMIKKKSKEAFIAFKEAL----------------YW 94 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------~~ 94 (207)
.-|.|++|...++++++....- .-.+-.|+.++..+|+|++++..-.+++ .+
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 3455666666666665543221 1234455556666666666666665555 33
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
.+.+..+..+...|+.++|...|+.+-+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44566677777777777777777776543
No 235
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=0.0012 Score=48.44 Aligned_cols=114 Identities=12% Similarity=0.128 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLD-PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENY 100 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l 100 (207)
..+.+..++.-.|.|.-+.+.+++++..+ |..+.....+|.+.++.|+.+.|..+|+..- ...+..+.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34567788888999999999999999988 5788889999999999999999999998544 66778888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhcccc
Q 040667 101 SHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGRTS 146 (207)
Q Consensus 101 ~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~~ 146 (207)
+.++...+++.+|...+.+.+..+|. ..++.+.+....+...+++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK 307 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALK 307 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987 44566677777777777765
No 236
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.68 E-value=0.0018 Score=39.80 Aligned_cols=75 Identities=25% Similarity=0.250 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC--HHHHHHHHHHHHHhcCHHHHHHHHHH
Q 040667 16 SKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN--GEAWNNIACLHMIKKKSKEAFIAFKE 90 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 90 (207)
.+..+++.+..+|++..+.+.++..+...|++++|++.+-.++..++++ ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4567889999999999999999999999999999999999999998765 66777777777778876655555544
No 237
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.67 E-value=0.0039 Score=51.10 Aligned_cols=123 Identities=15% Similarity=0.188 Sum_probs=97.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC------------------ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSL------------------YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
|..-+...+++.|+.+.+.|...... ....|..+++.....|-++.....|++.+.+.-..|
T Consensus 432 aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTP 511 (835)
T KOG2047|consen 432 AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATP 511 (835)
T ss_pred HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCH
Confidence 34445667888888888887764211 124677889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHH---HcCCHHHHHHHHHHHHhcCCC
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVAL---DVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~---~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+..|.|..+....-++++.+.|++.+ ...+|..+-..+. ....++.|...|+++++..|.
T Consensus 512 qii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 512 QIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH
Confidence 999999999999999999999999999 4445554443332 334789999999999998885
No 238
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.00036 Score=52.51 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHV 103 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~ 103 (207)
-+..-|+-|++.++|..|+..|.+.+...-.+ ...|.|.+-+...+|+|..|+..+.+++ +..+++.=+.|
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 34457999999999999999999999875443 4568999999999999999999999999 78889999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 040667 104 ALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 104 ~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+..+..+.+|..+.+..+.++-.
T Consensus 163 ~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999988888888777766543
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.65 E-value=0.00043 Score=46.72 Aligned_cols=57 Identities=25% Similarity=0.265 Sum_probs=50.3
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
++..+...|++++|+..+++++..+|.+..++..+..++...|+...|+..|+++..
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 567788999999999999999999999999999999999999999999999998754
No 240
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.65 E-value=0.00086 Score=46.77 Aligned_cols=89 Identities=16% Similarity=0.133 Sum_probs=71.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
+|..++..+++++|+..++.++....+. +-+-..++.+....|.+++|+..+.....-+ -.+..-...|.++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHHcC
Confidence 6788899999999999999998764432 2355689999999999999999987643311 12344567899999999
Q ss_pred CHHHHHHHHHHHh
Q 040667 80 KSKEAFIAFKEAL 92 (207)
Q Consensus 80 ~~~~A~~~~~~~~ 92 (207)
+-.+|...|++++
T Consensus 174 ~k~~Ar~ay~kAl 186 (207)
T COG2976 174 DKQEARAAYEKAL 186 (207)
T ss_pred chHHHHHHHHHHH
Confidence 9999999999998
No 241
>PRK10941 hypothetical protein; Provisional
Probab=97.64 E-value=0.00061 Score=50.68 Aligned_cols=68 Identities=15% Similarity=0.018 Sum_probs=46.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWN 69 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 69 (207)
++=..+...++++.|+.+.+..+...|+++.-+-..|.+|.++|.+..|..-++..++..|+++.+-.
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 34455666677777777777777777777766666777777777777777777777777776665543
No 242
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.64 E-value=0.00011 Score=35.79 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
+++.+|.++...|++++|+..|++++...|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56777888888888888888888888777753
No 243
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0065 Score=44.11 Aligned_cols=141 Identities=19% Similarity=0.089 Sum_probs=95.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALS-----SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNNIA 72 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~ 72 (207)
|...-....+.++..+|+++.... |+....-...+--....-++++|+.+|++++.+--.+ .+.+...+
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~s 157 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCS 157 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 344456677888999999988764 3333333444444566778999999999988764433 24566778
Q ss_pred HHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ccccHHHHHHHHHH
Q 040667 73 CLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN-KRIDTELLERIVLD 140 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~ 140 (207)
+++.+...+.+|-..+.+-. ....+.....++....+|..|..+++...++..- .+.+...+..+++.
T Consensus 158 r~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a 237 (308)
T KOG1585|consen 158 RVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA 237 (308)
T ss_pred hHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence 88999999999998887755 1222333344455566999999999987665422 34455666666666
Q ss_pred Hhcc
Q 040667 141 LEGR 144 (207)
Q Consensus 141 ~~~~ 144 (207)
|++.
T Consensus 238 yd~g 241 (308)
T KOG1585|consen 238 YDEG 241 (308)
T ss_pred hccC
Confidence 6554
No 244
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.56 E-value=0.01 Score=45.63 Aligned_cols=112 Identities=13% Similarity=0.123 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH---hcCHHHHHHHHH
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI---KKKSKEAFIAFK 89 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~ 89 (207)
.+.-+..|++|++.+|++...+..+-.+..+..+.++...-+++++..+|++...|..+-..... .-.++.....|.
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 45678899999999999999998888888888899999999999999999999988766554333 335778888888
Q ss_pred HHh-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 90 EAL-----------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 90 ~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+++ ...++..+.......|-.+.|+..++-.++++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 888 23455666777888999999999999999976
No 245
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.54 E-value=0.0054 Score=39.35 Aligned_cols=89 Identities=22% Similarity=0.190 Sum_probs=64.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC------------hHHHHHHHHHHHHccCHHHHHHHHHHHH-------ccCCCC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLY------------PDGWFALGAAALKARDVEKALDGFTRAV-------QLDPDN 64 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~-------~~~p~~ 64 (207)
|...+..|-|++|..-++++++..... ..++-.|+..+..+|+|++++....+++ +++.+.
T Consensus 16 ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde 95 (144)
T PF12968_consen 16 AERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE 95 (144)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc
Confidence 344566789999999999999875332 2356678999999999988777666665 455555
Q ss_pred HHH----HHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 65 GEA----WNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 65 ~~~----~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
... .++.+..+..+|+.++|+..|+++.
T Consensus 96 GklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 96 GKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 444 4678888999999999999998865
No 246
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=97.53 E-value=0.01 Score=39.70 Aligned_cols=100 Identities=11% Similarity=0.017 Sum_probs=66.7
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
....+.+++...+...--..|+.+..-..-|.+++..|+|.+|+..++...+-.+..+...-.++.|++.+|+.+
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~----- 95 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAE----- 95 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChH-----
Confidence 345666777777666666677777777777777777777777777777777766666766677777777777653
Q ss_pred HHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 88 FKEALYWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 88 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
|...+.-....+...+++...+...
T Consensus 96 ---------Wr~~A~~~le~~~~~~a~~Lv~al~ 120 (153)
T TIGR02561 96 ---------WHVHADEVLARDADADAVALVRALL 120 (153)
T ss_pred ---------HHHHHHHHHHhCCCHhHHHHHHHHh
Confidence 5555555555555556655554443
No 247
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.51 E-value=0.00018 Score=36.01 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=15.6
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+..+|.+|...|+|++|+.+|++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666666666666666666666443
No 248
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.50 E-value=0.016 Score=47.69 Aligned_cols=119 Identities=13% Similarity=0.224 Sum_probs=95.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHh-CCCC-----hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC----CHHHHHHHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMAL-SSLY-----PDGWFALGAAALKARDVEKALDGFTRAVQLDPD----NGEAWNNIACLH 75 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~ 75 (207)
+-+..|+..+-+..|.+|+.. +|.- ...|..+|..|...|+.+.|...|+++....-. -..+|+..|..-
T Consensus 356 V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 356 VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME 435 (835)
T ss_pred hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence 345567788888888888763 5543 357888999999999999999999998876432 257888888888
Q ss_pred HHhcCHHHHHHHHHHHh-----------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 76 MIKKKSKEAFIAFKEAL-----------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~-----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
....+++.|+...+++. +..+|..++......|-++.....|.+.+++.
T Consensus 436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 88889999999888877 56788888888888898888999999888765
No 249
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.46 E-value=0.00031 Score=35.19 Aligned_cols=29 Identities=17% Similarity=0.279 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+|.++|.+|...|++++|+.+|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 46788888888888888888888866543
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.46 E-value=0.0038 Score=49.72 Aligned_cols=90 Identities=17% Similarity=0.185 Sum_probs=72.9
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----------------------
Q 040667 35 FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---------------------- 92 (207)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---------------------- 92 (207)
..+..-.++..+.+.-++..++|++++|+.+.+|..++.- ......+|.+.|++++
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 4566667788999999999999999999999999988752 2233566777777766
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 --------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...+...+|.|..+.|+.++|++.+++.++..|.
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~ 291 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN 291 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc
Confidence 2345577899999999999999999999998875
No 251
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.41 E-value=0.0082 Score=53.33 Aligned_cols=94 Identities=12% Similarity=0.105 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVAL 105 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~ 105 (207)
.|..|..+|.+-+.+++|.++|+..+....+...+|..++..++..++-++|...+.+|+ +.......|.+.+
T Consensus 1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 444556666666666666666666666666566667777777666666666666666666 5556666666667
Q ss_pred HcCCHHHHHHHHHHHHhcCCC
Q 040667 106 DVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.|+.+.+...|+..+.-.|.
T Consensus 1612 k~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCcc
Confidence 777777777777766666665
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.37 E-value=0.00043 Score=33.63 Aligned_cols=31 Identities=13% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+++.+|.++...|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5778889999999999999999999988885
No 253
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=97.35 E-value=0.0025 Score=50.61 Aligned_cols=119 Identities=10% Similarity=-0.083 Sum_probs=100.3
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
...|+...|-.....+++..|..|......+.++..+|+|+++...+..+-..-.....+...+-....++|++++|...
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 46788999999999999999999998889999999999999999988776655555555666677788899999999988
Q ss_pred HHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 88 FKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 88 ~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
-...+ +..+...-+.....+|-++++..+|++.+.++|.
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 87777 6666666666777888999999999999999986
No 254
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=97.34 E-value=0.00094 Score=49.97 Aligned_cols=70 Identities=26% Similarity=0.336 Sum_probs=63.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
|.-....|+.++|..+|+-|+...|++++++..+|......++.-+|-.+|-+++.++|.+..++.+...
T Consensus 123 A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 123 AGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4455678999999999999999999999999999999999999999999999999999999988776654
No 255
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.33 E-value=0.0085 Score=49.61 Aligned_cols=114 Identities=20% Similarity=0.123 Sum_probs=92.8
Q ss_pred cCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcc-----CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 10 RGGYETSKILWEAAMAL-----SSLYPDGWFALGAAALKAR-----DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~-----~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
.+|.+.|+.+|+.+... ....+.+.+.+|.+|.+-. +.+.|..+|.++..+. ++.+.+.+|.++....
T Consensus 262 ~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~ 339 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGT 339 (552)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCC
Confidence 46899999999999771 1125567788999998743 7888999999988765 5678888999888766
Q ss_pred ---CHHHHHHHHHHHh---cHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCC
Q 040667 80 ---KSKEAFIAFKEAL---YWQLWENYSHVALDV----GNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 80 ---~~~~A~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p 125 (207)
++..|.++|..+. +..+.+.++.||..- .+.+.|..++.++-+..+
T Consensus 340 ~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~ 395 (552)
T KOG1550|consen 340 KERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN 395 (552)
T ss_pred ccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC
Confidence 5789999999999 888999999988654 478899999999998873
No 256
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.31 E-value=0.00062 Score=32.28 Aligned_cols=32 Identities=38% Similarity=0.703 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCC
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPD 63 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 63 (207)
.++..+|.++...++++.|...+++++...|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45677888888888888888888888887764
No 257
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.27 E-value=0.0019 Score=35.34 Aligned_cols=45 Identities=16% Similarity=0.096 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
.++.+|..+.+.|+|++|..+.+.++++.|++.........+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~ 47 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDK 47 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 567889999999999999999999999999855444444444333
No 258
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=97.25 E-value=0.002 Score=35.25 Aligned_cols=40 Identities=23% Similarity=0.232 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIA 72 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 72 (207)
.++.++..++++|+|++|..+.+.+++..|++..+.....
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~ 42 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE 42 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence 4566777777888888888888888888887776655443
No 259
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.25 E-value=0.011 Score=42.61 Aligned_cols=82 Identities=16% Similarity=0.123 Sum_probs=59.0
Q ss_pred ccCHHHHHHHHHHHHcc----CCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------------cHHHHH
Q 040667 44 ARDVEKALDGFTRAVQL----DPD---NGEAWNNIACLHMIKKKSKEAFIAFKEAL------------------YWQLWE 98 (207)
Q Consensus 44 ~~~~~~A~~~~~~a~~~----~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------~~~~~~ 98 (207)
...+++|++.|.-|+-. ... -+..+..++++|...|+.+.....+++|+ ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44567777777766532 111 24668888999988888555444444444 467888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 99 NYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 99 ~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.+|.+..+.|++++|..+|.+++....
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 999999999999999999999987543
No 260
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=97.24 E-value=0.00069 Score=48.48 Aligned_cols=61 Identities=28% Similarity=0.540 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
+......++.+.|.+.|.+++...|.....|+.+|....+.|+++.|...|++.++++|.+
T Consensus 2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3456678999999999999999999999999999999999999999999999999999976
No 261
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.23 E-value=0.00015 Score=54.58 Aligned_cols=88 Identities=18% Similarity=0.220 Sum_probs=78.6
Q ss_pred HHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHH
Q 040667 39 AAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQA 113 (207)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A 113 (207)
.-.+..|.++.|++.|..++.++|.....+...+.++.++++...|+..|..++ ...-+-..|.....+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 334557889999999999999999999999999999999999999999999999 555677788889999999999
Q ss_pred HHHHHHHHhcCCC
Q 040667 114 LEAVQMVLNMTNN 126 (207)
Q Consensus 114 ~~~~~~al~~~p~ 126 (207)
...+..+.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999988744
No 262
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.023 Score=45.33 Aligned_cols=120 Identities=15% Similarity=0.058 Sum_probs=57.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh---CCC-------ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC-C--HHHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMAL---SSL-------YPDGWFALGAAALKARDVEKALDGFTRAVQLDPD-N--GEAWNNI 71 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~-~--~~~~~~l 71 (207)
.+-...|++.+|+.....+.+- .|. .+..++.+|......+.++.|...|..|..+... + .-+..++
T Consensus 331 ~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnl 410 (629)
T KOG2300|consen 331 MCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNL 410 (629)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhH
Confidence 3444556666666555554442 222 1234445555555556666666666666554321 1 1223445
Q ss_pred HHHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 72 ACLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 72 ~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
+..|...++-+.-.+.++..- ...+++..|...+..+++.+|...+.+.++..
T Consensus 411 Ai~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 411 AISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 555555444333333222211 33444555555555555555555555555544
No 263
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.16 E-value=0.011 Score=50.15 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc----------CC----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQL----------DP----------DNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~p----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.|++.+.-+...++.+.|+++|+|+-.. +| .++..|...|......|+.+.|+.+|..+-
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 5677788888889999999999986321 22 234677888888888999999999988876
Q ss_pred --------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 93 --------------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 93 --------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+..+.+.+|+.|...|++.+|+.+|.++-..
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999999887543
No 264
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.017 Score=43.11 Aligned_cols=112 Identities=14% Similarity=0.017 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---cHHHHHH---HHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---YWQLWEN---YSHVALD 106 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~---l~~~~~~ 106 (207)
.-+.-+.-....|++.+|...|..++...|.+..+...++.+|...|+.+.|...+...- ....+.. ....+.+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 334556677889999999999999999999999999999999999999999998887654 2222222 1233334
Q ss_pred cCCHHHHHHHHHHHHhcCCCcc---ccHHHHHHHHHHHhccc
Q 040667 107 VGNIGQALEAVQMVLNMTNNKR---IDTELLERIVLDLEGRT 145 (207)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~---~~~~~~~~~~~~~~~~~ 145 (207)
.....+. ..+.+.+..+|++. ..++..+...+..+.++
T Consensus 216 aa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al 256 (304)
T COG3118 216 AAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAAL 256 (304)
T ss_pred HhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3333332 23344556677522 33334444444444443
No 265
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.12 E-value=0.016 Score=40.45 Aligned_cols=92 Identities=16% Similarity=0.031 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------cHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDN---GEAWNNIACLHMIKKKSKEAFIAFKEAL-----------YWQLW 97 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~ 97 (207)
.++..+|..|.+.|+.++|++.|.++....... .+.+.++..+....+++.....+..++- ...+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 577899999999999999999999987754332 4667888888899999999998888877 22234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
..-|..++..++|..|.+.|-.+..-
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccCcC
Confidence 44566677888999998888777543
No 266
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.05 E-value=0.0012 Score=31.16 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.++..+|.++...+++++|..++.+++++.|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 45778888999999999999999998888774
No 267
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.05 E-value=0.063 Score=42.97 Aligned_cols=124 Identities=17% Similarity=0.133 Sum_probs=92.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC-Ch--HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-------HHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL-YP--DGWFALGAAALKARDVEKALDGFTRAVQLDPDN-------GEAWNNIA 72 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~-~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-------~~~~~~l~ 72 (207)
+|.....-+.|+.|...|..+.+.... +. .+..+++.+|...++-+.-.+.++..--.+... ..+++..|
T Consensus 373 lGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~g 452 (629)
T KOG2300|consen 373 LGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYG 452 (629)
T ss_pred HhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHH
Confidence 455666778899999999999887543 22 344578999999887666555555432221111 25678889
Q ss_pred HHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 73 CLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...+.++++.||...+.+.+ ....+..+|.+....|+..++.+...-++.+...
T Consensus 453 lfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 453 LFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 99999999999999999988 5556778899999999999999988888776543
No 268
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.05 E-value=0.056 Score=40.86 Aligned_cols=114 Identities=14% Similarity=0.096 Sum_probs=88.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----ccCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhc-----
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALK----ARDVEKALDGFTRAVQLDPDN-GEAWNNIACLHMIKK----- 79 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~----~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~----- 79 (207)
..+..+|..+|+.+.. ...+.+.+.+|.++.. ..+..+|..+|+++....... ..+.+.+|.+|..-.
T Consensus 90 ~~~~~~A~~~~~~~a~--~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~ 167 (292)
T COG0790 90 SRDKTKAADWYRCAAA--DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAV 167 (292)
T ss_pred cccHHHHHHHHHHHhh--cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcc
Confidence 3468889999985544 4577888899999987 559999999999999875433 344788888877642
Q ss_pred --CHHHHHHHHHHHh---cHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCC
Q 040667 80 --KSKEAFIAFKEAL---YWQLWENYSHVALDV----GNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 80 --~~~~A~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p 125 (207)
+...|+..|.++. +..+...+|.+|..- .++.+|..+|.++-+...
T Consensus 168 ~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 168 AYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred cHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 2337888888887 888899999888553 488999999999988764
No 269
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.051 Score=40.06 Aligned_cols=117 Identities=15% Similarity=0.155 Sum_probs=97.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-cCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH-HHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKA-RDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK-EAFI 86 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~-~A~~ 86 (207)
.......|+.+-..++..+|.+..+|...-.++..+ .+..+=++++...++-+|.+-.+|...-.+....|++. .-++
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe 134 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE 134 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence 344567888888899999999888888777776655 45778889999999999999999999999999999888 7777
Q ss_pred HHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 87 AFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 87 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
..+.++ +..+|...-.+....+.+++-+.+..+.++.+-
T Consensus 135 f~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di 178 (318)
T KOG0530|consen 135 FTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDI 178 (318)
T ss_pred HHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhh
Confidence 778777 788888888888888889999999998888664
No 270
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.00 E-value=0.081 Score=41.29 Aligned_cols=87 Identities=18% Similarity=0.055 Sum_probs=56.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYP-DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
+...-.|+++.|.+-|+..+. +|..- -.+-.|-.--...|+.+.|..+..++....|.-+-++...-...+..|+++.
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHH
Confidence 444566788888877766654 23211 1122222233457788888888888888888777777766667777788888
Q ss_pred HHHHHHHHh
Q 040667 84 AFIAFKEAL 92 (207)
Q Consensus 84 A~~~~~~~~ 92 (207)
|++......
T Consensus 207 AlkLvd~~~ 215 (531)
T COG3898 207 ALKLVDAQR 215 (531)
T ss_pred HHHHHHHHH
Confidence 887776544
No 271
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.98 E-value=0.013 Score=49.71 Aligned_cols=84 Identities=15% Similarity=0.067 Sum_probs=76.5
Q ss_pred HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 43 KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
..++|.+|+.-..+.+...|+...+...-|.++.++|++++|..+++..- +...+-.+-.||...+++++|..+|
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHH
Confidence 45789999999999999999999999999999999999999996666544 7777888899999999999999999
Q ss_pred HHHHhcCCC
Q 040667 118 QMVLNMTNN 126 (207)
Q Consensus 118 ~~al~~~p~ 126 (207)
++++..+|+
T Consensus 101 e~~~~~~P~ 109 (932)
T KOG2053|consen 101 ERANQKYPS 109 (932)
T ss_pred HHHHhhCCc
Confidence 999999997
No 272
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.95 E-value=0.1 Score=39.42 Aligned_cols=122 Identities=24% Similarity=0.161 Sum_probs=92.1
Q ss_pred chHHHHHh----cCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHcc-------CHHHHHHHHHHHHccCCCCHHHHH
Q 040667 2 SLARSAYN----RGGYETSKILWEAAMALSSLY-PDGWFALGAAALKAR-------DVEKALDGFTRAVQLDPDNGEAWN 69 (207)
Q Consensus 2 ~la~~~~~----~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~-------~~~~A~~~~~~a~~~~p~~~~~~~ 69 (207)
+||..+.. ..++.+|..+|+++....-.. ..+...+|.++..-. +...|...|.++.... ++.+..
T Consensus 114 ~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~ 191 (292)
T COG0790 114 NLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQL 191 (292)
T ss_pred hHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHH
Confidence 35666665 449999999999999875333 344778888887641 3347999999988766 788999
Q ss_pred HHHHHHHH----hcCHHHHHHHHHHHh---cHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMI----KKKSKEAFIAFKEAL---YWQLWENYSHVALDVG---------------NIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~----~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~---------------~~~~A~~~~~~al~~~p~ 126 (207)
.+|.+|.. ..++.+|..+|.++. +....+.++ ++...| +...|...+..+....+.
T Consensus 192 ~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 192 LLGRMYEKGLGVPRDLKKAFRWYKKAAEQGDGAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 99988765 347899999999999 767888888 777666 677788888877766653
No 273
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.87 E-value=0.039 Score=43.06 Aligned_cols=96 Identities=11% Similarity=0.020 Sum_probs=77.7
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHcc----CCCCHHHHHHHHHHHHH---hcCHHHHHHHHHHHh------cHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQL----DPDNGEAWNNIACLHMI---KKKSKEAFIAFKEAL------YWQLW 97 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~------~~~~~ 97 (207)
++...++-..|....+|+.-+...+..-.+ -+..+.+...+|.++.+ .|+.++|+..+..++ +...+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~ 220 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL 220 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence 455667777888999999999998887666 44566778888888888 899999999998866 77888
Q ss_pred HHHHHHHHHc---------CCHHHHHHHHHHHHhcCCC
Q 040667 98 ENYSHVALDV---------GNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 98 ~~l~~~~~~~---------~~~~~A~~~~~~al~~~p~ 126 (207)
..+|.+|... ...++|+.+|.++.+++|+
T Consensus 221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence 8888887533 2467999999999999987
No 274
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.84 E-value=0.052 Score=46.29 Aligned_cols=83 Identities=12% Similarity=0.049 Sum_probs=60.1
Q ss_pred HHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------------------------cH
Q 040667 40 AALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------------------------YW 94 (207)
Q Consensus 40 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------------~~ 94 (207)
.|...|.|++|.+..+.-=.+ .--..|++.+.-+...++.+.|+++|+++- +.
T Consensus 835 lyQs~g~w~eA~eiAE~~DRi--HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~ 912 (1416)
T KOG3617|consen 835 LYQSQGMWSEAFEIAETKDRI--HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDE 912 (1416)
T ss_pred HHHhcccHHHHHHHHhhccce--ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccch
Confidence 344445555555544321111 112568888888899999999999999865 67
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.+|...|..+...|+.+.|+.+|..+-...
T Consensus 913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~f 942 (1416)
T KOG3617|consen 913 SLYSWWGQYLESVGEMDAALSFYSSAKDYF 942 (1416)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHhhhhh
Confidence 788889999999999999999998886544
No 275
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=96.82 E-value=0.027 Score=34.63 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=36.7
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 50 ALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 50 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+..+++.++.+|++..+.+.++..+...|++++|++.+-.++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4567888899999999999999999999999999999988877
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.81 E-value=0.054 Score=36.93 Aligned_cols=109 Identities=15% Similarity=0.096 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALD 106 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~ 106 (207)
..+..+..+-...++.+++...+...-.+.|..+..-..-|+++...|++.+|+..++... .+.+--.++.|+..
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~ 90 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA 90 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence 3456667777888999999999999999999999999999999999999999999999988 56667788899988
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Q 040667 107 VGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLE 142 (207)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 142 (207)
.|+.+- ..+..++++..++ +.....+..+.+.-+
T Consensus 91 ~~D~~W-r~~A~evle~~~d-~~a~~Lv~~Ll~~~~ 124 (160)
T PF09613_consen 91 LGDPSW-RRYADEVLESGAD-PDARALVRALLARAD 124 (160)
T ss_pred cCChHH-HHHHHHHHhcCCC-hHHHHHHHHHHHhcc
Confidence 888652 2334456665542 234444444444333
No 277
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.81 E-value=0.0034 Score=50.99 Aligned_cols=83 Identities=17% Similarity=0.145 Sum_probs=39.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPD-GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAF 88 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 88 (207)
.||...|+.++..|+...|.... ...+++.+..+-|-.-.|-..+.+++.+....+-.++.+|..+..+.+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 44445555555555444443322 23344444444444444555555555444444444444555555555555555554
Q ss_pred HHHh
Q 040667 89 KEAL 92 (207)
Q Consensus 89 ~~~~ 92 (207)
+.++
T Consensus 700 ~~a~ 703 (886)
T KOG4507|consen 700 RQAL 703 (886)
T ss_pred HHHH
Confidence 4444
No 278
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=96.81 E-value=0.026 Score=44.23 Aligned_cols=89 Identities=21% Similarity=0.118 Sum_probs=72.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--------Ch----------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSL--------YP----------DGWFALGAAALKARDVEKALDGFTRAVQLDPDNG 65 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~--------~~----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~ 65 (207)
|..++.+++|..|..-|+.++++..+ .+ ..--.+..||.++++.+-|+....+++.++|.+.
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 45567788888888888888876321 11 1234689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.-+...+.++..+.+|.+|...+--+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988765443
No 279
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.74 E-value=0.019 Score=41.48 Aligned_cols=83 Identities=18% Similarity=0.063 Sum_probs=61.5
Q ss_pred cCCHHHHHHHHHHHHHhC----CCC---hHHHHHHHHHHHHccCHH-------HHHHHHHHHHccC--CC----CHHHHH
Q 040667 10 RGGYETSKILWEAAMALS----SLY---PDGWFALGAAALKARDVE-------KALDGFTRAVQLD--PD----NGEAWN 69 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~----p~~---~~~~~~l~~~~~~~~~~~-------~A~~~~~~a~~~~--p~----~~~~~~ 69 (207)
...+++|+..|.-|+-.. ++. +..+..+|++|...|+-+ .|++.|.++++.. |. ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 446788888888777542 111 356678899999988854 4666666666543 22 246788
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+|.+.++.|++++|..+|.+++
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi 192 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVI 192 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999999999999988
No 280
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.70 E-value=0.084 Score=41.32 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=30.2
Q ss_pred HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 24 MALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 24 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+..+|.+.+++..++.++...|+++.|.+.+++|+-
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf 68 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALF 68 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345788888999999999999999999988888863
No 281
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.68 E-value=0.15 Score=39.42 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=44.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCC----CChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSS----LYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.+......|+++.|...+.++...++ ..+.+.+..+.+++..|+..+|+..++..+.
T Consensus 152 ~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 152 FAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45677788899999988888877552 1456677788888889999999888888776
No 282
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=96.66 E-value=0.047 Score=38.18 Aligned_cols=91 Identities=18% Similarity=0.051 Sum_probs=71.4
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CCHH----HHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLY---PDGWFALGAAALKARDVEKALDGFTRAVQLDP--DNGE----AWNNIA 72 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~----~~~~l~ 72 (207)
.+|..|...|++++|+++|.++.+..... .+.++.+..+.+..++|.....+..++-.+.. .++. ....-|
T Consensus 41 ~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~g 120 (177)
T PF10602_consen 41 DLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEG 120 (177)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 47899999999999999999988765322 35677888888999999999999999876533 3332 234456
Q ss_pred HHHHHhcCHHHHHHHHHHHh
Q 040667 73 CLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 73 ~~~~~~~~~~~A~~~~~~~~ 92 (207)
..+...++|.+|.+.|-.+.
T Consensus 121 L~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 121 LANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHhchHHHHHHHHHccC
Confidence 77788899999999887776
No 283
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=96.65 E-value=0.08 Score=42.92 Aligned_cols=91 Identities=19% Similarity=0.273 Sum_probs=75.8
Q ss_pred HHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----cHHH
Q 040667 21 EAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----YWQL 96 (207)
Q Consensus 21 ~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~ 96 (207)
++-++.+|.+..+|+.+-.-+... -+++..+.|++.+...|..+.+|.......+..++|+.-...|.+|+ +..+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDL 88 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDL 88 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhH
Confidence 677889999999999988877666 89999999999999999999999999999999999999999999999 6666
Q ss_pred HHHHHH-HHHHcCCHHH
Q 040667 97 WENYSH-VALDVGNIGQ 112 (207)
Q Consensus 97 ~~~l~~-~~~~~~~~~~ 112 (207)
|..+-. +-...|+...
T Consensus 89 W~lYl~YVR~~~~~~~~ 105 (656)
T KOG1914|consen 89 WKLYLSYVRETKGKLFG 105 (656)
T ss_pred HHHHHHHHHHHccCcch
Confidence 655443 2233344443
No 284
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.63 E-value=0.23 Score=38.89 Aligned_cols=118 Identities=19% Similarity=0.043 Sum_probs=72.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHH-----------------------------------
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDG----------------------------------- 53 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~----------------------------------- 53 (207)
..|..+.|+.+-..+-...|.-++++...-......|+|+.|+..
T Consensus 166 r~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp 245 (531)
T COG3898 166 RLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADP 245 (531)
T ss_pred hcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCCh
Confidence 345555555555555555555555555444444455555555444
Q ss_pred ------HHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------------------------------
Q 040667 54 ------FTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----------------------------------- 92 (207)
Q Consensus 54 ------~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------------------------- 92 (207)
..+++++.|+...+-..-+..+++.|+..++-.+++.+-
T Consensus 246 ~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 246 ASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCCcHHHHHHHHHHHHhcC
Confidence 444445566666666667777888888777777766655
Q ss_pred --cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 --YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 --~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.......+......|++..|....+.+....|.
T Consensus 326 ~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr 361 (531)
T COG3898 326 PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR 361 (531)
T ss_pred ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch
Confidence 4555566666666667777777777777777764
No 285
>PRK10941 hypothetical protein; Provisional
Probab=96.59 E-value=0.02 Score=42.73 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...++-.++.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl 242 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 345677788899999999999999999999999889989998888888888887776554
No 286
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.58 E-value=0.22 Score=38.40 Aligned_cols=108 Identities=14% Similarity=0.113 Sum_probs=83.8
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccC------------HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 18 ILWEAAMALSSLYPDGWFALGAAALKARD------------VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 18 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
.-+++.+..+|.+..+|..+.......-. .+.-+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45788899999999999988776654432 467788999999999999999998888888888888888
Q ss_pred HHHHHHh-----cHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCC
Q 040667 86 IAFKEAL-----YWQLWENYSHVALD---VGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 86 ~~~~~~~-----~~~~~~~l~~~~~~---~~~~~~A~~~~~~al~~~p 125 (207)
+-+++++ +..+|..+-..... .-.++.....|.++++.-.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~ 133 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALS 133 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 8999999 56666665544433 2356778888888776543
No 287
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=96.57 E-value=0.098 Score=34.53 Aligned_cols=63 Identities=14% Similarity=0.170 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhcC---HHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 66 EAWNNIACLHMIKKK---SKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~---~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
...+++++++....+ ..+.+..++..+ .....+.++..+.+.++|+.++.+.+..++..|++.
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence 445566666655443 455666666555 445667778888888888888888888888888643
No 288
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.54 E-value=0.19 Score=39.41 Aligned_cols=124 Identities=15% Similarity=-0.006 Sum_probs=91.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHh--------------CCC------------Ch---HHHHHHHHHHHHccCHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMAL--------------SSL------------YP---DGWFALGAAALKARDVEKALDG 53 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~--------------~p~------------~~---~~~~~l~~~~~~~~~~~~A~~~ 53 (207)
++.++..+|++..|.+++++|+-. ++. |- .+.+.....+.+.|.+.-|.++
T Consensus 46 ls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~ 125 (360)
T PF04910_consen 46 LSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEW 125 (360)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 678899999999999999999642 111 11 2445667788899999999999
Q ss_pred HHHHHccCCC-CHHHHHH-HHHHHHHhcCHHHHHHHHHHHh----------cHHHHHHHHHHHHHcCCH-----------
Q 040667 54 FTRAVQLDPD-NGEAWNN-IACLHMIKKKSKEAFIAFKEAL----------YWQLWENYSHVALDVGNI----------- 110 (207)
Q Consensus 54 ~~~a~~~~p~-~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~----------- 110 (207)
.+-.+.++|. |+..... +-....+.++|+--+..++... -+..-+..+.++...++.
T Consensus 126 ~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~ 205 (360)
T PF04910_consen 126 CKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGR 205 (360)
T ss_pred HHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCcccccccccccc
Confidence 9999999998 7654433 3334456677766666655533 124556677778888887
Q ss_pred ----HHHHHHHHHHHhcCCC
Q 040667 111 ----GQALEAVQMVLNMTNN 126 (207)
Q Consensus 111 ----~~A~~~~~~al~~~p~ 126 (207)
+.|...+.+|+...|.
T Consensus 206 ~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 206 SENSESADEALQKAILRFPW 225 (360)
T ss_pred ccchhHHHHHHHHHHHHhHH
Confidence 8999999999999884
No 289
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.49 E-value=0.043 Score=45.29 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYP------DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
|..++..++|..++++|...+..-|.+. .....+..||..+.+.+.|.+++.+|-+.+|.++-....+-.+...
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~ 440 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLA 440 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence 5567888899999999999988777543 3445788999999999999999999999999988877777778888
Q ss_pred hcCHHHHHHHHHHHh
Q 040667 78 KKKSKEAFIAFKEAL 92 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~ 92 (207)
.++-.+|+....+..
T Consensus 441 E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 441 EDKSEEALTCLQKIK 455 (872)
T ss_pred hcchHHHHHHHHHHH
Confidence 888888888877655
No 290
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.49 E-value=0.016 Score=47.31 Aligned_cols=75 Identities=25% Similarity=0.313 Sum_probs=66.2
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM 76 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 76 (207)
+||+++...|-.-.|-.++.+++.++...+-.++.+|..+..+.+.+.|++.|+.++.++|+++.+-..+-.+-+
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 578888888888899999999999998888899999999999999999999999999999999877665554443
No 291
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.41 E-value=0.076 Score=44.11 Aligned_cols=110 Identities=15% Similarity=0.075 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----cCHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHHhc---
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKA-----RDVEKALDGFTRAVQL-----DPDNGEAWNNIACLHMIKK--- 79 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~--- 79 (207)
...|.++++.+... .+..+...+|.++..- .+.+.|+.+|+.+... .-.++.+.+.+|.+|....
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887665 4677778888888754 6899999999998761 1225668889999998853
Q ss_pred --CHHHHHHHHHHHh---cHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcC
Q 040667 80 --KSKEAFIAFKEAL---YWQLWENYSHVALDVG---NIGQALEAVQMVLNMT 124 (207)
Q Consensus 80 --~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~---~~~~A~~~~~~al~~~ 124 (207)
++..|+.+|.++- +....+.+|.++.... ++..|.++|..|.+..
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC
Confidence 6788999999998 8899999999998766 5789999999998765
No 292
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.28 E-value=0.092 Score=42.16 Aligned_cols=78 Identities=17% Similarity=0.131 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHh
Q 040667 15 TSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK-SKEAFIAFKEAL 92 (207)
Q Consensus 15 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~ 92 (207)
.-...|+.++...+.+...|........+.+.+.+--..|.+++..+|++++.|..-+...+.-+. .+.|...|.+++
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 345567888888888888888777776777778888888888888888888888887777666665 777777788877
No 293
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.28 E-value=0.013 Score=29.83 Aligned_cols=30 Identities=20% Similarity=0.267 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.++.++|.+|...|++++|..++++++.+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456677777777777777777777776643
No 294
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.25 E-value=0.14 Score=32.51 Aligned_cols=87 Identities=10% Similarity=-0.009 Sum_probs=57.7
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHhcC----H-------HHHHHHHHHHh-----cHHHH
Q 040667 37 LGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACLHMIKKK----S-------KEAFIAFKEAL-----YWQLW 97 (207)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~~~----~-------~~A~~~~~~~~-----~~~~~ 97 (207)
++.-++..|++-+|++..+..+...+++. ..+..-|.+++.+.. . -.+++.|.++. .+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 45678899999999999999999988766 455666777765532 2 24555555555 44455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+.+|.-+-...-|+++..-.+++|.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 55555554455566666666666654
No 295
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.25 E-value=0.011 Score=30.14 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
++.++|.+|...|++++|+.++++++.+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 4566677777777777777777666653
No 296
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.032 Score=45.03 Aligned_cols=82 Identities=20% Similarity=0.067 Sum_probs=45.5
Q ss_pred cCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH---HHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHH
Q 040667 45 RDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS---KEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEA 116 (207)
Q Consensus 45 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~ 116 (207)
+.+..++..|.+++...|.....+.+.+.++++.+-. -.|+..+..++ ...+|+.++.++..++++.+|+.+
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3455566666666666666666666666655554332 23333333333 445566666666666666666666
Q ss_pred HHHHHhcCCC
Q 040667 117 VQMVLNMTNN 126 (207)
Q Consensus 117 ~~~al~~~p~ 126 (207)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 6555555554
No 297
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=96.03 E-value=0.17 Score=34.02 Aligned_cols=90 Identities=17% Similarity=-0.039 Sum_probs=71.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcC
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVG 108 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~ 108 (207)
+.....+-...++++++...+...--+.|+.+.+-..-|.++...|++.+|+..++... .+..--.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 33444455568999999999999889999999999999999999999999999999988 4566677889999999
Q ss_pred CHHHHHHHHHHHHhcC
Q 040667 109 NIGQALEAVQMVLNMT 124 (207)
Q Consensus 109 ~~~~A~~~~~~al~~~ 124 (207)
+.+- ..+..++++-+
T Consensus 93 Dp~W-r~~A~~~le~~ 107 (153)
T TIGR02561 93 DAEW-HVHADEVLARD 107 (153)
T ss_pred ChHH-HHHHHHHHHhC
Confidence 8652 22333444444
No 298
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=96.01 E-value=0.042 Score=40.67 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
++=..+...++++.|....++.+.++|.++.-+...|.+|..+|.+.-|++.+...+
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~ 242 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFV 242 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHH
Confidence 344445555666666666666666666666666666666666666666666555544
No 299
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.93 E-value=0.45 Score=38.05 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=67.3
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH--HHHH------H---HccCC---CCHHHH
Q 040667 4 ARSAYNRGG-YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALD--GFTR------A---VQLDP---DNGEAW 68 (207)
Q Consensus 4 a~~~~~~~~-~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~--~~~~------a---~~~~p---~~~~~~ 68 (207)
|.-+...|. -++|+.+++.++...|.+..+-... ..+ -...|.+|+. .+-+ . ..+.| .+.+.-
T Consensus 386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v-~~f-vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eia 463 (549)
T PF07079_consen 386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIV-FLF-VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIA 463 (549)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHH-HHH-HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHH
Confidence 344555665 7889999999999888776543211 111 1111222211 1111 1 12233 223444
Q ss_pred HHHHH--HHHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 69 NNIAC--LHMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 69 ~~l~~--~~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
+.++. -++..|+|.++..+..=.. ++.++..+|.|++..++|++|-.++.+.
T Consensus 464 n~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 44444 4677888888775432222 8888899999999999999998888654
No 300
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.92 E-value=0.046 Score=33.87 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=38.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC---------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 040667 7 AYNRGGYETSKILWEAAMALSSLY---------PDGWFALGAAALKARDVEKALDGFTRAVQLDP 62 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 62 (207)
....|+|.+|++.+.+..+..... ..+..++|.++...|++++|+..+++++.+..
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356788888888887777653221 23456677777777788888877777776643
No 301
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.91 E-value=0.68 Score=37.06 Aligned_cols=121 Identities=10% Similarity=-0.031 Sum_probs=82.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGW-----FALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
.|..+..++++.+|.+.|.+..+...+.+..+ .++..-.+-+++.+.-....-..-+..|..+....-.|...++
T Consensus 12 Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 12 QGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK 91 (549)
T ss_pred hhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 46777889999999999999888765554322 2222222334555555555554455567777777777888889
Q ss_pred hcCHHHHHHHHHHHh--------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 78 KKKSKEAFIAFKEAL--------------------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 78 ~~~~~~A~~~~~~~~--------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
.+.+++|++.+..-- +...-...+.++...|++.++...+++.+..
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 999998887664322 2333345678889999999999988888753
No 302
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.88 E-value=0.078 Score=47.12 Aligned_cols=122 Identities=18% Similarity=0.203 Sum_probs=95.4
Q ss_pred HHHHHhcCCHHHHHH------HHHHH-HHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC--------CCCHHHH
Q 040667 4 ARSAYNRGGYETSKI------LWEAA-MALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD--------PDNGEAW 68 (207)
Q Consensus 4 a~~~~~~~~~~~A~~------~~~~a-l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------p~~~~~~ 68 (207)
|......+.+.+|.. ++... -..+|.....+..++.++.+++++++|+..-.++.-+. |+....+
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455667776666 44422 23467788899999999999999999999998877542 4556778
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.+++...+..++...|+..+.++. ...+..+++.++...++++.|+.+.+.|+...-
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 889998999999999999888887 344567888888888999999999999998653
No 303
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.82 E-value=0.076 Score=39.75 Aligned_cols=62 Identities=16% Similarity=0.082 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 16 SKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
|..+|.+|+...|.++..++.+|.+....|+.-.|+-+|-+++....-.+.+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999997765668899999888887
No 304
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.69 E-value=0.76 Score=40.61 Aligned_cols=87 Identities=17% Similarity=0.213 Sum_probs=68.0
Q ss_pred HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 43 KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
..+..+.|.++..++ +.+.+|..+|.+....|...+|++.|-++-++..+.....+..+.|.|++-+.++..+-+
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 345556666665554 346899999999999999999999999888888888899999999999999999998887
Q ss_pred cCCCccccHHHH
Q 040667 123 MTNNKRIDTELL 134 (207)
Q Consensus 123 ~~p~~~~~~~~~ 134 (207)
.......+.+.+
T Consensus 1162 k~~E~~id~eLi 1173 (1666)
T KOG0985|consen 1162 KVREPYIDSELI 1173 (1666)
T ss_pred hhcCccchHHHH
Confidence 654433344433
No 305
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.46 Score=39.08 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=88.4
Q ss_pred HHHHHHHHHHhCCCChHHHHH--HHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH-Hh
Q 040667 16 SKILWEAAMALSSLYPDGWFA--LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKE-AL 92 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~~~--l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~ 92 (207)
++..+...+.++|.++..+.. +...+...++...+.-....++..+|.+..+..+++.+....|....+...+.. +.
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~ 129 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAE 129 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 566666666778888776443 467777888898999999999999999999999999999888887777766655 33
Q ss_pred -----cHHH------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 93 -----YWQL------WENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 93 -----~~~~------~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
+... ++.++......|+..++.....++.++.|.+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~ 175 (620)
T COG3914 130 WLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKY 175 (620)
T ss_pred hcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhh
Confidence 2222 3336888899999999999999999999974
No 306
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=95.64 E-value=0.16 Score=33.59 Aligned_cols=61 Identities=20% Similarity=0.250 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHcc---CHHHHHHHHHHHHc-cCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 32 DGWFALGAAALKAR---DVEKALDGFTRAVQ-LDPDN-GEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 32 ~~~~~l~~~~~~~~---~~~~A~~~~~~a~~-~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...+++++++.... +..+.+..++..+. -.|.. -+..+.++..++++++|+.++.+.+.++
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll 98 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALL 98 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444444322 23444455555443 22221 2334445555555555555555555444
No 307
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.64 E-value=0.2 Score=30.96 Aligned_cols=52 Identities=33% Similarity=0.362 Sum_probs=33.6
Q ss_pred HHHccCHHHHHHHHHHHHccCCCC---------HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 41 ALKARDVEKALDGFTRAVQLDPDN---------GEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 41 ~~~~~~~~~A~~~~~~a~~~~p~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
..+.|+|.+|++.+.+........ ..+..+++.++...|++++|+..+++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 356788888888888877653321 2345556666666666666666666666
No 308
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=95.61 E-value=0.1 Score=39.15 Aligned_cols=59 Identities=15% Similarity=0.315 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (207)
++..++..+...|+++.++..+++.+..+|.+..+|..+...|+..|+...|+..|++.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 45567777888899999999999999999999999999999999999999998888753
No 309
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=95.56 E-value=0.24 Score=39.91 Aligned_cols=87 Identities=15% Similarity=0.084 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Q 040667 48 EKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGN-IGQALEAVQMVL 121 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~-~~~A~~~~~~al 121 (207)
..-...|+.+....+.++..|.....-..+.+.+.+--..|.+++ ++.+|..-|.-.+..+. .+.|...+.+++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 445678899999999999999998888778888999999999999 88899988888777776 999999999999
Q ss_pred hcCCCccccHHHH
Q 040667 122 NMTNNKRIDTELL 134 (207)
Q Consensus 122 ~~~p~~~~~~~~~ 134 (207)
+.+|+.+.-+..+
T Consensus 168 R~npdsp~Lw~ey 180 (568)
T KOG2396|consen 168 RFNPDSPKLWKEY 180 (568)
T ss_pred hcCCCChHHHHHH
Confidence 9999855444433
No 310
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=95.46 E-value=0.7 Score=35.60 Aligned_cols=106 Identities=14% Similarity=0.137 Sum_probs=68.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC--------------C---------C
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD--------------P---------D 63 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------p---------~ 63 (207)
.....+..+-++.-..+++++|....++..++.-- ..-..+|.+.+++++... + .
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDt 271 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDT 271 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhccc
Confidence 34556777788888999999999999888776432 223456666666665421 0 1
Q ss_pred CH--HHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHH
Q 040667 64 NG--EAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQAL 114 (207)
Q Consensus 64 ~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~ 114 (207)
+. .+...++.|..++|+..+|++.++... -..+..++-..+....-|.+..
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvq 331 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQ 331 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 234567888889999999999888776 2234445555555544444433
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=95.42 E-value=0.029 Score=25.59 Aligned_cols=22 Identities=27% Similarity=0.222 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHccCHHHHHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGF 54 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~ 54 (207)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555544
No 312
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.40 E-value=0.093 Score=42.54 Aligned_cols=84 Identities=17% Similarity=-0.031 Sum_probs=72.7
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc---cCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKA---RDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAF 85 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~ 85 (207)
..+.+..|+..|.+++...|.....+.+.+.++++. |+.-.|+.-...++.++|....+|+.|+.++..++++.+|+
T Consensus 386 y~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 386 YESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred hhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 344577899999999999999999999999998875 46667888888899999999999999999999999999999
Q ss_pred HHHHHHh
Q 040667 86 IAFKEAL 92 (207)
Q Consensus 86 ~~~~~~~ 92 (207)
.....+.
T Consensus 466 ~~~~alq 472 (758)
T KOG1310|consen 466 SCHWALQ 472 (758)
T ss_pred hhHHHHh
Confidence 8876555
No 313
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.27 E-value=0.12 Score=45.97 Aligned_cols=125 Identities=18% Similarity=0.202 Sum_probs=100.3
Q ss_pred CchHHHHHhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--------CCCC
Q 040667 1 RSLARSAYNRGGYETSKILWEAAMAL--------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--------DPDN 64 (207)
Q Consensus 1 r~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~p~~ 64 (207)
|.|+..+...+++++|+.+-.++.-+ .|+....+.+++...+..+....|...+.++..+ .|.-
T Consensus 977 ~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~ 1056 (1236)
T KOG1839|consen 977 RSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT 1056 (1236)
T ss_pred HHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch
Confidence 35788899999999999998888654 2445567788888888899999999999888765 4555
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 65 GEAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
.....+++.++...++++.|+.+.+.+. ....+..+++.+...+++..|.......+.+.+
T Consensus 1057 a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~ 1130 (1236)
T KOG1839|consen 1057 ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYK 1130 (1236)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHH
Confidence 5677889999999999999999999988 556677788888888888888777777665543
No 314
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=95.26 E-value=0.073 Score=26.49 Aligned_cols=31 Identities=13% Similarity=0.177 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHH--HHHHHccCC
Q 040667 32 DGWFALGAAALKARDVEKALDG--FTRAVQLDP 62 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~--~~~a~~~~p 62 (207)
+.++.+|..+...|++++|+.. |+-+..++|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 3455666666666666666666 335544444
No 315
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=95.24 E-value=0.12 Score=38.66 Aligned_cols=57 Identities=23% Similarity=0.338 Sum_probs=49.0
Q ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHH
Q 040667 50 ALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALD 106 (207)
Q Consensus 50 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~ 106 (207)
|..+|.+|+.+.|.++..++.+|.++...|+.-.|+-+|-+++ ...+..++...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999 66677777777776
No 316
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.12 E-value=0.045 Score=39.56 Aligned_cols=53 Identities=21% Similarity=0.319 Sum_probs=47.1
Q ss_pred HHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 40 AALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 40 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
...+.++.+.+.+.|.+++++.|.....|..+|....+.|+++.|...|++.+
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999988888887
No 317
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=1.3 Score=35.00 Aligned_cols=118 Identities=12% Similarity=0.011 Sum_probs=86.3
Q ss_pred hcCCHHHHHHHHHHHHHhCC----C-----ChHHHHHHHHHHHHccCHHHHHHHHHHHHcc---CCC---CHHHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSS----L-----YPDGWFALGAAALKARDVEKALDGFTRAVQL---DPD---NGEAWNNIAC 73 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p----~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~---~~~~~~~l~~ 73 (207)
.++++.+|..+-+..+..-. . .+..|+.+..++...|+...-...+...+.. ..+ -+...+.+=.
T Consensus 138 d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr 217 (493)
T KOG2581|consen 138 DQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLR 217 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHH
Confidence 46778888887766655321 1 2346777888888888866655555544432 211 1334566677
Q ss_pred HHHHhcCHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 74 LHMIKKKSKEAFIAFKEAL---------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 74 ~~~~~~~~~~A~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.|...+.|+.|-....+.. ....++.+|.+..-+++|..|.+++..++...|+
T Consensus 218 ~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 218 NYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 8888899999998888877 5567788999999999999999999999999997
No 318
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.09 E-value=0.16 Score=38.52 Aligned_cols=56 Identities=23% Similarity=0.282 Sum_probs=49.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 37 LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+.-..+.|+.++|...|..++.++|.++.++..+|......++.-+|-.+|-+++
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~AL 177 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKAL 177 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheee
Confidence 34445678999999999999999999999999999999888888999999998888
No 319
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.08 E-value=1.5 Score=35.55 Aligned_cols=67 Identities=12% Similarity=0.142 Sum_probs=39.7
Q ss_pred HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 43 KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
++|+.+.|.+..+ ..+++..|..+|......|+++-|.++|+++- -+..+..+|...|+.+.-.+..
T Consensus 330 ~lg~L~~A~~~a~-----~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---d~~~L~lLy~~~g~~~~L~kl~ 396 (443)
T PF04053_consen 330 QLGNLDIALEIAK-----ELDDPEKWKQLGDEALRQGNIELAEECYQKAK---DFSGLLLLYSSTGDREKLSKLA 396 (443)
T ss_dssp HCT-HHHHHHHCC-----CCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----HHHHHHHHHHCT-HHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---CccccHHHHHHhCCHHHHHHHH
Confidence 4444444444322 23467899999999999999999999998865 1222333444444444333333
No 320
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.06 E-value=1.4 Score=38.18 Aligned_cols=123 Identities=18% Similarity=0.128 Sum_probs=81.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHHH--HHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYP-----DGWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEAW--NNIA 72 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~--~~l~ 72 (207)
|.+....|++++|+++.+.++..-|.+. .+...+|.+..-.|++++|..+.+.+.+..... -.+| ...+
T Consensus 465 a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s 544 (894)
T COG2909 465 AQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQS 544 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4566778899999999999998876543 356678888888999999999888887763221 1222 2223
Q ss_pred HHHHHhcC----------------------------------------HHHHHHHHHHHh------------cHHHHHHH
Q 040667 73 CLHMIKKK----------------------------------------SKEAFIAFKEAL------------YWQLWENY 100 (207)
Q Consensus 73 ~~~~~~~~----------------------------------------~~~A~~~~~~~~------------~~~~~~~l 100 (207)
.++..+|+ ++.+.....+.+ ...+.+.+
T Consensus 545 ~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~L 624 (894)
T COG2909 545 EILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSML 624 (894)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHH
Confidence 44444442 222222222211 22334688
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 101 SHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 101 ~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+.+....|++++|.....+...+..+
T Consensus 625 A~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 625 AELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999888765533
No 321
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=0.52 Score=39.30 Aligned_cols=88 Identities=9% Similarity=-0.026 Sum_probs=65.4
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCC------HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDN------GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVA 104 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~ 104 (207)
+-+.-.++..+|..+++.|...+..-|.+ .....++..||..+.+.+.|.++++++- ++.....+-.+.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSF 438 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34555677888888888888888766644 3567788888888888888888888887 344455566667
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q 040667 105 LDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 105 ~~~~~~~~A~~~~~~al~~ 123 (207)
...+..++|..+.......
T Consensus 439 ~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 439 LAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHhcchHHHHHHHHHHHhh
Confidence 7778888888888766554
No 322
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.02 E-value=1.1 Score=33.80 Aligned_cols=119 Identities=14% Similarity=0.120 Sum_probs=80.4
Q ss_pred HHhcCCHHHHHHHHHHHHHhC-CCCh-------HHHHHHHHHHHHcc-CHHHHHHHHHHHHcc----CC---CC------
Q 040667 7 AYNRGGYETSKILWEAAMALS-SLYP-------DGWFALGAAALKAR-DVEKALDGFTRAVQL----DP---DN------ 64 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~-p~~~-------~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~----~p---~~------ 64 (207)
....|+++.|..++.++-... ..++ ..+++.|......+ +++.|..+++++.++ .+ ..
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 457899999999999987755 3333 35567788888888 999999999999887 22 11
Q ss_pred -HHHHHHHHHHHHHhcCHHHHHH---HHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 65 -GEAWNNIACLHMIKKKSKEAFI---AFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 65 -~~~~~~l~~~~~~~~~~~~A~~---~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
..++..++.+|...+.++...+ ..+.+- .+.++...-.++.+.++.+.+.+.+.+++.-.+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 2456778888888877653333 322222 344443444445557888888888888887544
No 323
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=94.92 E-value=0.055 Score=27.29 Aligned_cols=28 Identities=21% Similarity=0.514 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
++..+|.+-...++|++|+.-|++++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666666666666654
No 324
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=94.91 E-value=1.2 Score=34.35 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------------------
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------------------- 92 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------- 92 (207)
.-+.+....++..+..+-+.....+++++|....++..++.- ...-..+|.+.+++++
T Consensus 186 ~e~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEE--Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~ 263 (556)
T KOG3807|consen 186 PEDEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEE--EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQH 263 (556)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhh--hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccch
Confidence 345667777888889999999999999999999988877753 2233456666666665
Q ss_pred --------cH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 93 --------YW--QLWENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 93 --------~~--~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
+. .+-..++.|..++|+..+|++.++...+-.|
T Consensus 264 da~~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~p 306 (556)
T KOG3807|consen 264 EAQLRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFP 306 (556)
T ss_pred hhhhhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 22 2345678999999999999999999888776
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.84 E-value=0.18 Score=37.85 Aligned_cols=58 Identities=16% Similarity=0.127 Sum_probs=53.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
++..+...|+++.++..+++.+..+|.+...|..+...|...|+...|+..|++.-..
T Consensus 159 lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 159 LAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 5677888899999999999999999999999999999999999999999999987663
No 326
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.83 E-value=0.52 Score=38.09 Aligned_cols=84 Identities=18% Similarity=0.175 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHc
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDV 107 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~ 107 (207)
.+++..|..+|......|+++-|.++|+++-. +..+..+|...|+.+.-.+....+....-+...-.++...
T Consensus 344 ~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d--------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~l 415 (443)
T PF04053_consen 344 LDDPEKWKQLGDEALRQGNIELAEECYQKAKD--------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLL 415 (443)
T ss_dssp CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC--------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHc
Confidence 34678999999999999999999999998753 3345555566666544333333333111111122345555
Q ss_pred CCHHHHHHHHHH
Q 040667 108 GNIGQALEAVQM 119 (207)
Q Consensus 108 ~~~~~A~~~~~~ 119 (207)
|+.++.++.+.+
T Consensus 416 gd~~~cv~lL~~ 427 (443)
T PF04053_consen 416 GDVEECVDLLIE 427 (443)
T ss_dssp T-HHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 666666665554
No 327
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.79 E-value=1 Score=33.96 Aligned_cols=86 Identities=24% Similarity=0.241 Sum_probs=64.0
Q ss_pred HHHccCHHHHHHHHHHHHccC----CCC----HHHHHHHHHHHHHhc-CHHHHHHHHHHHh-------------------
Q 040667 41 ALKARDVEKALDGFTRAVQLD----PDN----GEAWNNIACLHMIKK-KSKEAFIAFKEAL------------------- 92 (207)
Q Consensus 41 ~~~~~~~~~A~~~~~~a~~~~----p~~----~~~~~~l~~~~~~~~-~~~~A~~~~~~~~------------------- 92 (207)
.++.|+++.|...+.|+-... |+. ...+++.|......+ ++++|..+++++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999987654 332 357889999999999 9999999999988
Q ss_pred cHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhcCCC
Q 040667 93 YWQLWENYSHVALDVGNIGQ---ALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~---A~~~~~~al~~~p~ 126 (207)
...++..++.++...+.++. |....+.+-.-.|+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~ 119 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN 119 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC
Confidence 45677888999998887664 44444444333444
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.72 E-value=0.054 Score=24.65 Aligned_cols=22 Identities=18% Similarity=0.028 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHH
Q 040667 67 AWNNIACLHMIKKKSKEAFIAF 88 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~ 88 (207)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
No 329
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=94.72 E-value=0.45 Score=41.92 Aligned_cols=92 Identities=15% Similarity=0.091 Sum_probs=63.1
Q ss_pred HHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHHHHHh----c---CHHHHHHHHHHHh----cHHHHHHHHH
Q 040667 37 LGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACLHMIK----K---KSKEAFIAFKEAL----YWQLWENYSH 102 (207)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~~~----~~~~~~~l~~ 102 (207)
..+++...+.|++|+..|++.-...|+.. ++....|.....+ | .+++|+..|++.. -+--|.+.|.
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Confidence 34555666677777777777777776543 4556666655432 2 4677777777766 3444666677
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcc
Q 040667 103 VALDVGNIGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~~p~~~ 128 (207)
+|.++|++++-+++|.-+++..|+.+
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 78888888888888888888888744
No 330
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=94.65 E-value=0.98 Score=31.74 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=66.8
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-----HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh-----c
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAAL-----KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK-----K 79 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-----~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~-----~ 79 (207)
++||++|...|+.-.+.+. .+...+.+|..++ ..++...|++.+..+.. .+.+.+...+|.++..- +
T Consensus 48 ~knF~~A~kv~K~nCden~-y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~ 124 (248)
T KOG4014|consen 48 QKNFQAAVKVFKKNCDENS-YPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA 124 (248)
T ss_pred HHHHHHHHHHHHhcccccC-CcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC
Confidence 4577777777777665554 4555566665554 24578899999998876 45778888888877643 2
Q ss_pred --CHHHHHHHHHHHh---cHHHHHHHHHHHHHc
Q 040667 80 --KSKEAFIAFKEAL---YWQLWENYSHVALDV 107 (207)
Q Consensus 80 --~~~~A~~~~~~~~---~~~~~~~l~~~~~~~ 107 (207)
+...|.+++.++. +..+.+++...++..
T Consensus 125 dpd~~Ka~~y~traCdl~~~~aCf~LS~m~~~g 157 (248)
T KOG4014|consen 125 DPDSEKAERYMTRACDLEDGEACFLLSTMYMGG 157 (248)
T ss_pred CCCcHHHHHHHHHhccCCCchHHHHHHHHHhcc
Confidence 3678999999998 677777777666554
No 331
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.55 E-value=1.7 Score=35.86 Aligned_cols=110 Identities=15% Similarity=0.208 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHH-HHhcCHHHHHHHHHHHh
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLH-MIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~ 92 (207)
+.+...|...+...|.....|...+..-.++|..+.+...|++++.-.|.+...|..+-... -..|+...-...|+.|.
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 55666777778889998899999999999999999999999999999998888887665433 34456666666777777
Q ss_pred --------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 93 --------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 93 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
....|-.+-......+++..-...|++.++.
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 5566777777777778888888888888875
No 332
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.52 E-value=0.38 Score=28.55 Aligned_cols=47 Identities=17% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH---HHHHhcCHHHHHHH
Q 040667 41 ALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC---LHMIKKKSKEAFIA 87 (207)
Q Consensus 41 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~---~~~~~~~~~~A~~~ 87 (207)
++...+.++|+..++++++..++.+.-+..+|. +|...|+|.+++.+
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555554444443333332 34444444444443
No 333
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.68 Score=34.40 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=100.9
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHH-HHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 11 GGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVE-KALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~-~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
.+..+-++++.+.+..+|.+...|...-.+....|++. .=+++.+.++..+..+-.+|...-++....+.++.-+.+..
T Consensus 92 ~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~ 171 (318)
T KOG0530|consen 92 SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYAD 171 (318)
T ss_pred HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHH
Confidence 35678889999999999999999999999999999988 88999999999999999999999999999999999999988
Q ss_pred HHh-----cHHHHHHHHHHHHH-c-----CCHHHHHHHHHHHHhcCCCccccHHHHHHHHHH
Q 040667 90 EAL-----YWQLWENYSHVALD-V-----GNIGQALEAVQMVLNMTNNKRIDTELLERIVLD 140 (207)
Q Consensus 90 ~~~-----~~~~~~~l~~~~~~-~-----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 140 (207)
..+ +-.+|...-.+... . -..+.-+.+..+.+.+.|++...+.-+..++..
T Consensus 172 ~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 172 ELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 888 22333322111111 1 134566778888899999866666555555544
No 334
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=94.40 E-value=0.41 Score=28.41 Aligned_cols=56 Identities=13% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHH---HHHHHHHccCHHHHHHHHHHHHc
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFA---LGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~---l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
|.-++...+.++|+..++++++..++.+..+.. +..++...|+|.+++.+.-+-++
T Consensus 13 GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 13 GLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666677777777777766665554433 34445666666666666544433
No 335
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.37 E-value=0.69 Score=34.24 Aligned_cols=76 Identities=11% Similarity=0.003 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcC
Q 040667 46 DVEKALDGFTRAVQLDPD------NGEAWNNIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVG 108 (207)
Q Consensus 46 ~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~ 108 (207)
.....++.+.+|++.... ...+...+|..|+..|++++|+..|+.+. ...+...+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344556666666654321 12455678999999999999999999988 5566777888899999
Q ss_pred CHHHHHHHHHHHH
Q 040667 109 NIGQALEAVQMVL 121 (207)
Q Consensus 109 ~~~~A~~~~~~al 121 (207)
+.+..+.+.-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9888877766554
No 336
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.36 E-value=0.95 Score=32.23 Aligned_cols=53 Identities=26% Similarity=0.285 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC----CHHHHHHHHHHHHHhcCHHHH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPD----NGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~----~~~~~~~l~~~~~~~~~~~~A 84 (207)
+...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++.++|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333344443333 33445555555555544322 244444555555555554444
No 337
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=94.36 E-value=0.099 Score=39.58 Aligned_cols=71 Identities=15% Similarity=0.120 Sum_probs=50.9
Q ss_pred HHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHh
Q 040667 22 AAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNN-IACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 22 ~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
++....|+++..|...+..-.+.+-+.+--..|.+++..+|.+++.|.. -+.-+...++++.+...|.+++
T Consensus 98 R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~gl 169 (435)
T COG5191 98 RSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGL 169 (435)
T ss_pred hhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhh
Confidence 3444567777888877777777788888888888888888888888765 3334555666666666666666
No 338
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.35 E-value=0.48 Score=40.02 Aligned_cols=85 Identities=13% Similarity=0.065 Sum_probs=47.9
Q ss_pred HHhcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHH----------------------ccCC
Q 040667 7 AYNRGGYETSKILWEAAMALSS--LYPDGWFALGAAALKARDVEKALDGFTRAV----------------------QLDP 62 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~----------------------~~~p 62 (207)
+...|+|-.-.++++..-..+. ....++.++|..+..+..|++|.++|.++- ..-|
T Consensus 770 r~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lp 849 (1189)
T KOG2041|consen 770 RKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLP 849 (1189)
T ss_pred HHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcC
Confidence 3345555555544443211111 112455556666666666666655554432 2246
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 040667 63 DNGEAWNNIACLHMIKKKSKEAFIAFKEA 91 (207)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (207)
++....-.+|..+...|--++|++.|-+.
T Consensus 850 e~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 850 EDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred cccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 67777777888888888888888776553
No 339
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=94.27 E-value=2.2 Score=33.85 Aligned_cols=122 Identities=16% Similarity=0.122 Sum_probs=67.9
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChH--HHH--HHHHHHHHccCHHHHHHHHHHHHccCCC---CHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPD--GWF--ALGAAALKARDVEKALDGFTRAVQLDPD---NGEAWNNIACLH 75 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~--~~~--~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~ 75 (207)
.+..++..++|..|...+......-|.... .+. ..|.-++..-++++|.+.+++.+...-. ....+..+..+.
T Consensus 137 ~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~ 216 (379)
T PF09670_consen 137 RAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVL 216 (379)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHH
Confidence 456778999999999999999886333333 333 3456667888999999999987764221 122222222222
Q ss_pred HHhcCHHHHHHHHHHHh----cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 76 MIKKKSKEAFIAFKEAL----YWQLW--ENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~----~~~~~--~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
.....+........... ...+. +.-|.=-...|+|+.|+..+-+++++-
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~ 271 (379)
T PF09670_consen 217 KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALELL 271 (379)
T ss_pred HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 22222222222111100 00111 111222235678888888887777754
No 340
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.99 E-value=3.1 Score=34.52 Aligned_cols=108 Identities=16% Similarity=0.125 Sum_probs=88.6
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHhcCHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLD-PDNGEAWNNIACLHMIKKKSKEAFI 86 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~ 86 (207)
...|+++.....|++++-........|...+......|+.+-|...+..+.... |..+.+...-+..--..|++..|..
T Consensus 308 i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 308 ITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKV 387 (577)
T ss_pred hhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHH
Confidence 467899999999999998888899999999999999999999998888887764 6677778878888888899999999
Q ss_pred HHHHHh-----cHHHHHHHHHHHHHcCCHHHHHH
Q 040667 87 AFKEAL-----YWQLWENYSHVALDVGNIGQALE 115 (207)
Q Consensus 87 ~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~ 115 (207)
.++++. ...+-........+.|+.+.+..
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 999988 33444445566777788887773
No 341
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.98 E-value=3.4 Score=35.02 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCC----hHHHHHHHHHHH-HccCHHHHHHHHHHHHccCCC--CHH----HHHHHHHHHHHhcCHHH
Q 040667 15 TSKILWEAAMALSSLY----PDGWFALGAAAL-KARDVEKALDGFTRAVQLDPD--NGE----AWNNIACLHMIKKKSKE 83 (207)
Q Consensus 15 ~A~~~~~~al~~~p~~----~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~--~~~----~~~~l~~~~~~~~~~~~ 83 (207)
.|+.+++-++...+-. ..+++.+|.+++ ...+++.|..++.|++.+... ..+ +...++.++.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 4566666555322212 235667777776 677788888888887766532 222 2344566666666555
Q ss_pred HHHHHHHHh----c-----HHHHHHH--HHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 84 AFIAFKEAL----Y-----WQLWENY--SHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 84 A~~~~~~~~----~-----~~~~~~l--~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
|...+++++ . +...+.+ .......+++..|.+.++......
T Consensus 118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 777777777 1 1111111 222222367777777777776654
No 342
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.97 E-value=0.61 Score=39.44 Aligned_cols=102 Identities=19% Similarity=0.056 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CCHHHHHHHHHHHHHhcCHHHHHHH
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDP--DNGEAWNNIACLHMIKKKSKEAFIA 87 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~ 87 (207)
-|+|++|.+.|-.+=+.+ .-...+.++|+|-.....++..-.-+. .-..+|.++|..+.....+++|.++
T Consensus 747 ~g~feeaek~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred hcchhHhhhhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777775542221 112345567777777777664322221 1246899999999999999999998
Q ss_pred HHHHh---------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040667 88 FKEAL---------------------------YWQLWENYSHVALDVGNIGQALEAVQM 119 (207)
Q Consensus 88 ~~~~~---------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 119 (207)
|.++- +...+-.+|..+...|.-++|.++|.+
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 88754 455566677777777777777777644
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.93 E-value=0.22 Score=37.38 Aligned_cols=59 Identities=17% Similarity=0.124 Sum_probs=49.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+...+..|...|.+.+|+...++++.++|-+...|..+..++...|+--++.+.|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34557778888999999999999999999988889989999999998888888877653
No 344
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=93.93 E-value=3.5 Score=34.95 Aligned_cols=118 Identities=17% Similarity=0.130 Sum_probs=80.5
Q ss_pred hHHHHH-hcCCHHHHHHHHHHHHHhCCC--ChH----HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHHHHHH
Q 040667 3 LARSAY-NRGGYETSKILWEAAMALSSL--YPD----GWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEAWNNI 71 (207)
Q Consensus 3 la~~~~-~~~~~~~A~~~~~~al~~~p~--~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l 71 (207)
+|.+++ ...|++.|..++.+++.+... ..+ +.+.++.++.+.+... |...++++++..... +...+.+
T Consensus 65 la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frl 143 (608)
T PF10345_consen 65 LASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRL 143 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHH
Confidence 566666 788999999999999887643 222 3456788888888777 999999998875441 2222222
Q ss_pred H--HHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 72 A--CLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 72 ~--~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
- ......+++..|++.++... ...+....+.++...+..+++++..+++.
T Consensus 144 l~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~ 206 (608)
T PF10345_consen 144 LKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAI 206 (608)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Confidence 2 22222379999999998887 22233444566667777778888887773
No 345
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.92 E-value=0.13 Score=25.99 Aligned_cols=28 Identities=21% Similarity=0.432 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
++..+|.+-...++|++|+.-|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666666666654
No 346
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=93.92 E-value=0.76 Score=33.24 Aligned_cols=70 Identities=17% Similarity=0.124 Sum_probs=59.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCH---HHHHHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNG---EAWNNIACL 74 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~---~~~~~l~~~ 74 (207)
..+...+...+++...++-++..|.+......+-..+.-.|+|++|...++-+-.+.|++. ..|..+..|
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 4567788999999999999999999999998899999999999999999999999999764 344444444
No 347
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=93.72 E-value=0.22 Score=39.42 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLD---------PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+...+..++..+|||..|++.++- ++++ +.+...++..|.+|+.+++|.+|++.|...+
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888899999999999875 3332 2345678999999999999999999999887
No 348
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=93.68 E-value=0.29 Score=22.95 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALG 38 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~ 38 (207)
+++.+...|++++...|.++..|...+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~ 28 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYA 28 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence 455555566666665555555555443
No 349
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.68 E-value=4.9 Score=35.81 Aligned_cols=120 Identities=16% Similarity=0.087 Sum_probs=87.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHc----c---CHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYP---DGWFALGAAALKA----R---DVEKALDGFTRAVQLDPDNGEAWNNIACL 74 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~---~~~~~l~~~~~~~----~---~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 74 (207)
.+++..+.|+.|+..|++.-...|.-. ++.+..|.+.... | .+++|+..|++. .-.|.-|--|...+.+
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 561 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALV 561 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHH
Confidence 567788899999999999999998754 5667788777543 2 578888888873 4466677778889999
Q ss_pred HHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Q 040667 75 HMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK 127 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~ 127 (207)
|..+|+++|-+++|.-++ ...+.+.+-.+... +-..|....--++.+.|..
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 562 YQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence 999999999999999999 22222333333322 2345666777788888873
No 350
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=93.56 E-value=3.3 Score=33.47 Aligned_cols=89 Identities=13% Similarity=0.115 Sum_probs=73.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----cH
Q 040667 19 LWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----YW 94 (207)
Q Consensus 19 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~ 94 (207)
-+++-++.+|++...|+.+...+...|.+++-.+.|.+...-.|-.+.+|.....--...+++..-...|.+|+ +.
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~l 109 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNL 109 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccH
Confidence 56778888999999999999999999999999999999999999888898876666666788888888888888 66
Q ss_pred HHHHHHHHHHHHc
Q 040667 95 QLWENYSHVALDV 107 (207)
Q Consensus 95 ~~~~~l~~~~~~~ 107 (207)
.+|..+-..-.+.
T Consensus 110 dLW~lYl~YIRr~ 122 (660)
T COG5107 110 DLWMLYLEYIRRV 122 (660)
T ss_pred hHHHHHHHHHHhh
Confidence 6666554433333
No 351
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=93.32 E-value=0.18 Score=38.24 Aligned_cols=63 Identities=13% Similarity=0.300 Sum_probs=53.9
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHH-HHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFA-LGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNI 71 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 71 (207)
..|-|.+--..|.+++..+|.+.+.|.. -+.-+...++++.+...|.+++..+|.+|.+|...
T Consensus 119 k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~ey 182 (435)
T COG5191 119 KKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEY 182 (435)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHH
Confidence 4556777778899999999999999876 55667788999999999999999999999888654
No 352
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=93.23 E-value=5.3 Score=34.87 Aligned_cols=106 Identities=15% Similarity=-0.011 Sum_probs=80.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--C-------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC-----HHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSL--Y-------PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN-----GEAWN 69 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~--~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~~~~~ 69 (207)
|.......++.+|..++.++...-|. . ....-..|.+....|++++|++..+.++..-|.+ ..+..
T Consensus 422 aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~s 501 (894)
T COG2909 422 AWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALS 501 (894)
T ss_pred HHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhh
Confidence 45566788999999999888775443 1 1233456888889999999999999999987754 35678
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh-----------cHHHHHHHHHHHHHcCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL-----------YWQLWENYSHVALDVGN 109 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~-----------~~~~~~~l~~~~~~~~~ 109 (207)
.+|.+..-.|++++|..+.+.+. ...+....+.++...|+
T Consensus 502 v~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 502 VLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 89999999999999999888777 33344555677777783
No 353
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.23 E-value=3.1 Score=32.17 Aligned_cols=98 Identities=17% Similarity=0.198 Sum_probs=77.5
Q ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC----CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------
Q 040667 29 LYPDGWFALGAAALKARDVEKALDGFTRAVQLDP----DNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------ 92 (207)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------ 92 (207)
.....|...+.+..+.|.++.|...+.++....+ ..+.+....+..+...|+..+|+..++..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 4456788899999999999999999999988653 246778888899999999999988776655
Q ss_pred ---------------------------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhcCCC
Q 040667 93 ---------------------------YWQLWENYSHVALDV------GNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ---------------------------~~~~~~~l~~~~~~~------~~~~~A~~~~~~al~~~p~ 126 (207)
...++..+|...... +..+++...|.++.+..|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 224 NAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 123455556555566 7788899999999999996
No 354
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=93.04 E-value=0.59 Score=35.23 Aligned_cols=56 Identities=16% Similarity=0.038 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
.....+..|...|.+.+|++..++++ +...+..+-.++...|+--.+++.|++.-+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 34456677889999999999999999 777888888999999998888887776543
No 355
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.91 E-value=0.54 Score=23.33 Aligned_cols=30 Identities=7% Similarity=0.072 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHhcCC
Q 040667 96 LWENYSHVALDVGNIGQALEA--VQMVLNMTN 125 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~--~~~al~~~p 125 (207)
.|+.+|..+...|++++|+.. |.-+..++|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455566666666666666666 324444443
No 356
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=92.83 E-value=0.33 Score=22.75 Aligned_cols=30 Identities=30% Similarity=0.435 Sum_probs=25.7
Q ss_pred cCHHHHHHHHHHHHccCCCCHHHHHHHHHH
Q 040667 45 RDVEKALDGFTRAVQLDPDNGEAWNNIACL 74 (207)
Q Consensus 45 ~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 74 (207)
|+++.+...|++++...|.++.+|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567899999999999999999999877653
No 357
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=92.77 E-value=3.8 Score=34.05 Aligned_cols=86 Identities=17% Similarity=0.070 Sum_probs=68.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH-HHccCCCCHHHHHHH------HHHHHHhc
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTR-AVQLDPDNGEAWNNI------ACLHMIKK 79 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-a~~~~p~~~~~~~~l------~~~~~~~~ 79 (207)
....+....+...+..++..+|++..++.+++......|....+...+.. +....|.+..+...+ +.....+|
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 156 (620)
T COG3914 77 LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLG 156 (620)
T ss_pred ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhc
Confidence 34566777888888999999999999999999999888877776666665 888889887655444 88888888
Q ss_pred CHHHHHHHHHHHh
Q 040667 80 KSKEAFIAFKEAL 92 (207)
Q Consensus 80 ~~~~A~~~~~~~~ 92 (207)
+..++.....++.
T Consensus 157 ~~~~~~~~l~~~~ 169 (620)
T COG3914 157 RTAEAELALERAV 169 (620)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888777
No 358
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.76 E-value=0.59 Score=34.80 Aligned_cols=65 Identities=17% Similarity=0.033 Sum_probs=47.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWN 69 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~ 69 (207)
..+...++++.|..+..+.+..+|+++.-+-..|.+|.++|.+.-|++.+...++..|+.+.+-.
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 44556677777777777777777777777777777777777777777777777777777665544
No 359
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=92.61 E-value=0.15 Score=39.19 Aligned_cols=71 Identities=15% Similarity=0.178 Sum_probs=42.2
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
++.+-+..+++..|+.....+++.++....+++..+..+..+.++++|++.+..+....|++..+...+..
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~ 351 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELEN 351 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHH
Confidence 34444555555556555555555555566666666666666666666666666666666666554444333
No 360
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=92.48 E-value=0.33 Score=38.49 Aligned_cols=55 Identities=9% Similarity=0.045 Sum_probs=46.6
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
...+.+++.-+|+|..|++.++-.- ...+++.+|-+|+-+++|.+|++.|...+-
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677889999999999876543 777899999999999999999999998874
No 361
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.03 E-value=6.3 Score=32.81 Aligned_cols=124 Identities=14% Similarity=0.028 Sum_probs=81.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHh-----CCC----------------ChH---HHHHHHHHHHHccCHHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMAL-----SSL----------------YPD---GWFALGAAALKARDVEKALDGFTRAV 58 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~-----~p~----------------~~~---~~~~l~~~~~~~~~~~~A~~~~~~a~ 58 (207)
++.++..+|+.+.|.++..+++=. +|. +-. +.+.....+.+.|.|.-|.++++-.+
T Consensus 290 va~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlll 369 (665)
T KOG2422|consen 290 VADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLL 369 (665)
T ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh
Confidence 567778889998888888877642 221 111 22334555567899999999999999
Q ss_pred ccCCC-CHHHHHHHHHHH-HHhcCHHHHHHHHHHHh---------cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcC
Q 040667 59 QLDPD-NGEAWNNIACLH-MIKKKSKEAFIAFKEAL---------YWQLWENYSHVALDVGN---IGQALEAVQMVLNMT 124 (207)
Q Consensus 59 ~~~p~-~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~---------~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~ 124 (207)
+++|. ++-+...+..+| .+..+|.--++.++..- +...-..++..|..... -..|...+.+|++..
T Consensus 370 sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 370 SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 99997 776554444443 34455655555555442 33334445566665555 457888889999988
Q ss_pred CC
Q 040667 125 NN 126 (207)
Q Consensus 125 p~ 126 (207)
|.
T Consensus 450 P~ 451 (665)
T KOG2422|consen 450 PL 451 (665)
T ss_pred cH
Confidence 84
No 362
>PF12854 PPR_1: PPR repeat
Probab=91.92 E-value=0.51 Score=22.96 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
..|..+...+.+.|+.++|.+.|+
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344455555555555555555544
No 363
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.86 E-value=0.39 Score=25.10 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=15.7
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMA 25 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~ 25 (207)
+||..|...|+++.|...+++.+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHH
Confidence 356666666666666666666664
No 364
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.85 E-value=5 Score=31.85 Aligned_cols=118 Identities=17% Similarity=0.198 Sum_probs=88.7
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC--HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC----HHHH
Q 040667 11 GGYETSKILWEAAMALSSLYPDGWFALGAAALKARD--VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK----SKEA 84 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~----~~~A 84 (207)
.-+++-+.+...++..+|+...+|..+..++.+.+. +..=+....++++.+|.+-.+|...-.+...... ..+-
T Consensus 89 ~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~E 168 (421)
T KOG0529|consen 89 ALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEE 168 (421)
T ss_pred HhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhH
Confidence 356778888999999999999999999999987664 6888999999999999988887665555444332 4566
Q ss_pred HHHHHHHh-----cHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHhcCCCcc
Q 040667 85 FIAFKEAL-----YWQLWENYSHVALD------VGN------IGQALEAVQMVLNMTNNKR 128 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~~~~~~------~~~------~~~A~~~~~~al~~~p~~~ 128 (207)
+++..+++ +..+|++...++.. .|+ ...-......++--+|+++
T Consensus 169 l~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~Dq 229 (421)
T KOG0529|consen 169 LEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQ 229 (421)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCcccc
Confidence 77778888 77888888777652 232 2345566667777778744
No 365
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=4.5 Score=30.70 Aligned_cols=47 Identities=13% Similarity=-0.004 Sum_probs=36.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC--------ChHHHHHHHHHHHHccCHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL--------YPDGWFALGAAALKARDVEK 49 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~l~~~~~~~~~~~~ 49 (207)
+|+.....+++++|+..|.+.+...-. ...+...++.+|...|++..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 567778889999999999999886321 22356789999998888744
No 366
>PF13041 PPR_2: PPR repeat family
Probab=91.65 E-value=1.2 Score=23.63 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.|..+-..+.+.|++++|.+.|++..+
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~ 31 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKK 31 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344444455555555555555555443
No 367
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.52 E-value=10 Score=34.16 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=28.1
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRA 57 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 57 (207)
+|.+-+..|...+|++-|-++ +++..+.....+..+.|.|++-+.++.-+
T Consensus 1110 lakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~Ma 1159 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMA 1159 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 444555555566666555443 45555555566666666666665555444
No 368
>PF12854 PPR_1: PPR repeat
Probab=91.51 E-value=0.65 Score=22.57 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.5
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAVQM 119 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 119 (207)
+...|..+...+.+.|+.++|.+.+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 455788889999999999999999875
No 369
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.47 E-value=8.6 Score=33.42 Aligned_cols=112 Identities=16% Similarity=0.135 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH---HhcCHHHHHHHHHH
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM---IKKKSKEAFIAFKE 90 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~---~~~~~~~A~~~~~~ 90 (207)
+.-+..+++-+.+++.....+..|-.++.+.|++++....-.+..++.|..+..|.....-.. ..++-.++...|++
T Consensus 96 ~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ek 175 (881)
T KOG0128|consen 96 NQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEK 175 (881)
T ss_pred hhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHH
Confidence 445666777777888888888899999999999999888888888899999988876655332 23667888889999
Q ss_pred Hh----cHHHHHHHHHHHHH-------cCCHHHHHHHHHHHHhcCC
Q 040667 91 AL----YWQLWENYSHVALD-------VGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 91 ~~----~~~~~~~l~~~~~~-------~~~~~~A~~~~~~al~~~p 125 (207)
++ ...+|...+..+.. .++++.....|.++++...
T Consensus 176 al~dy~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g 221 (881)
T KOG0128|consen 176 ALGDYNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLG 221 (881)
T ss_pred HhcccccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhh
Confidence 99 55566655555443 3567788888888887543
No 370
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=91.36 E-value=2.1 Score=36.76 Aligned_cols=115 Identities=16% Similarity=0.032 Sum_probs=66.2
Q ss_pred HHHHHhcCCHHHHHHHHHH------HHHh----CCCChH-HHHHHHHHHHHccCHHHHHHHHHHHHccC-----------
Q 040667 4 ARSAYNRGGYETSKILWEA------AMAL----SSLYPD-GWFALGAAALKARDVEKALDGFTRAVQLD----------- 61 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~------al~~----~p~~~~-~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----------- 61 (207)
|..|....++++|+++|++ ++++ .|.... .--.-|.-+...|+++.|+..|-.+--+.
T Consensus 668 gdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaieaai~ake 747 (1636)
T KOG3616|consen 668 GDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKE 747 (1636)
T ss_pred hhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhh
Confidence 5566777788888888764 3333 232211 12234666667777777777665432110
Q ss_pred --------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 62 --------------PDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 62 --------------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
..-...|-.++.-|...|+|+-|.+.|.++- ....-...|-+.|++++|.+...+..
T Consensus 748 w~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 748 WKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---LFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred hhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---hhHHHHHHHhccccHHHHHHHHHHhc
Confidence 0111234455666777788888887776543 22222345667777777777666554
No 371
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.10 E-value=0.67 Score=24.20 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
+.++..|...|+.+.|...+++++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 56788899999999999999888853
No 372
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=4 Score=28.59 Aligned_cols=115 Identities=10% Similarity=-0.032 Sum_probs=84.5
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHccCHHHHHHHHHHHHccCC--CC--HHHHHHHHHHHHHhcCH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYP--DGWFALGAAALKARDVEKALDGFTRAVQLDP--DN--GEAWNNIACLHMIKKKS 81 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--~~--~~~~~~l~~~~~~~~~~ 81 (207)
...+..++|+..|...-...-... -+.+..+.+..+.|+...|+..|..+-.-.| .- ..+...-+.++...|-|
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 355667788888777666544333 3556788999999999999999999765443 11 23445556677888888
Q ss_pred HHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 82 ~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+.-..-.+..- ...+...+|..-.+.|++..|...|.....
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 87766665544 445667789999999999999999998876
No 373
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.86 E-value=5.8 Score=33.28 Aligned_cols=70 Identities=26% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-+...+.++|++..++ ++-.+ .+..++|+++.|.....++ ++..-|..||.+....+++..|.++|.++.
T Consensus 624 le~~g~~e~AL~~s~D-~d~rF---elal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 624 LESQGMKEQALELSTD-PDQRF---ELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhccchHhhhhcCCC-hhhhh---hhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3444456667776663 32223 3445778888887766543 455678888888888888888888888876
No 374
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=90.81 E-value=2 Score=36.86 Aligned_cols=76 Identities=17% Similarity=0.084 Sum_probs=50.2
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHcCC
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDVGN 109 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~ 109 (207)
|-.+++-|...|+|+-|.+.|.++-. ...-...|-+.|++..|.+.-.++. ....|...+.-+.+.|+
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~--------~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADL--------FKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcch--------hHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc
Confidence 33567778888999999999876522 2223345667888999988888887 33445555555566666
Q ss_pred HHHHHHHH
Q 040667 110 IGQALEAV 117 (207)
Q Consensus 110 ~~~A~~~~ 117 (207)
+.+|.+.|
T Consensus 840 f~eaeqly 847 (1636)
T KOG3616|consen 840 FAEAEQLY 847 (1636)
T ss_pred hhhhhhee
Confidence 65555444
No 375
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.63 E-value=4.8 Score=28.78 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHh------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc-cccHHHHHHHHHHHh
Q 040667 81 SKEAFIAFKEAL------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNNK-RIDTELLERIVLDLE 142 (207)
Q Consensus 81 ~~~A~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~ 142 (207)
-++|...|-++- ++...+.+|..|. ..+.++++..+.+++++.+.. ..+...+..+...+.
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~ 189 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQ 189 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 355666665554 6667777776555 456777777777777766553 666666666555443
No 376
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.29 E-value=3.2 Score=31.23 Aligned_cols=49 Identities=2% Similarity=0.079 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 11 GGYETSKILWEAAMALSSLYPD----GWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.+.++|+.-|.++++..+...+ ++..+..+.+++++|++-.+.|++.+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3788999999999998876543 455667788889999888888877663
No 377
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.28 E-value=6.1 Score=32.91 Aligned_cols=111 Identities=17% Similarity=0.034 Sum_probs=63.3
Q ss_pred cCCHHHHHHHHHHHHHh------------CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc-----CC----------
Q 040667 10 RGGYETSKILWEAAMAL------------SSLYPDGWFALGAAALKARDVEKALDGFTRAVQL-----DP---------- 62 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~p---------- 62 (207)
...|++|...|.-++.. .|.+.+.+..++.++...|+.+-|.+...+++-. .|
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 44567777777766654 3445567777888888888888888887777621 12
Q ss_pred ------CCHH---HHHHHHHHHHHhcCHHHHHHHHHHHh------cHHHHHHHHHH-HHHcCCHHHHHHHHHHH
Q 040667 63 ------DNGE---AWNNIACLHMIKKKSKEAFIAFKEAL------YWQLWENYSHV-ALDVGNIGQALEAVQMV 120 (207)
Q Consensus 63 ------~~~~---~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~l~~~-~~~~~~~~~A~~~~~~a 120 (207)
.+-. +.+.....+.+.|.+.-|.++++-.+ ++.....+..+ ..+..+|.--+..++..
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 1111 12223334445677777777766655 33333333333 34555666555555544
No 378
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=90.22 E-value=0.7 Score=35.70 Aligned_cols=91 Identities=16% Similarity=0.093 Sum_probs=49.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCC---CC----------------hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSS---LY----------------PDGWFALGAAALKARDVEKALDGFTRAVQLDP 62 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p---~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 62 (207)
..|...+..++|+.|..-|.+++..-. .+ .....+++.+-.+.+.+..|+..-..++..++
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~ 306 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALRDER 306 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccccCh
Confidence 456677888899999888888876421 00 01122344444455555555555444444444
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 63 DNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
....+++..+..+..+.++++|++.+..+.
T Consensus 307 s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~ 336 (372)
T KOG0546|consen 307 SKTKAHYRRGQAYKLLKNYDEALEDLKKAK 336 (372)
T ss_pred hhCcHHHHHHhHHHhhhchhhhHHHHHHhh
Confidence 444555555555555555555555544443
No 379
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=90.18 E-value=1.6 Score=32.26 Aligned_cols=78 Identities=13% Similarity=-0.044 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCC------CChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCC------CHHHHHHHHHHHHHhcCH
Q 040667 14 ETSKILWEAAMALSS------LYPDGWFALGAAALKARDVEKALDGFTRAVQLDPD------NGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 14 ~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~ 81 (207)
...++++.+|+.... -.......+|..|+..|+|++|+.+|+.+...-.. ...+...+..|+...|+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~ 234 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDV 234 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCH
Confidence 344555555555432 23468889999999999999999999998654321 235677888899999999
Q ss_pred HHHHHHHHHH
Q 040667 82 KEAFIAFKEA 91 (207)
Q Consensus 82 ~~A~~~~~~~ 91 (207)
+..+...-+.
T Consensus 235 ~~~l~~~leL 244 (247)
T PF11817_consen 235 EDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHH
Confidence 9888775443
No 380
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.06 E-value=4.1 Score=34.09 Aligned_cols=48 Identities=21% Similarity=0.168 Sum_probs=29.6
Q ss_pred HHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 76 MIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 76 ~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
.++|+++.|.....++-+..-|..+|.+....+++..|.+++.++...
T Consensus 648 l~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 455666666665555545556666666666666666666666665443
No 381
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=89.96 E-value=6.5 Score=29.67 Aligned_cols=50 Identities=22% Similarity=0.411 Sum_probs=43.0
Q ss_pred HccCHHHHHHHHHHHHccCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 43 KARDVEKALDGFTRAVQLDPDNG----EAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
+..+.++|+..|++++++.|.-+ .++..+..+++.+++|++-++.|.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 34589999999999999998654 467778889999999999999999887
No 382
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=89.95 E-value=6.1 Score=28.94 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=26.1
Q ss_pred cHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhcCCC
Q 040667 93 YWQLWENYSHVAL---------DVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ~~~~~~~l~~~~~---------~~~~~~~A~~~~~~al~~~p~ 126 (207)
....+...|..+. ..++...|..++++|+.++|+
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 4455666677663 456788999999999999986
No 383
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.87 E-value=10 Score=31.36 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=68.2
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----
Q 040667 17 KILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---- 92 (207)
Q Consensus 17 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 92 (207)
...+.+.+.... +..++..++.||... ..++-...+++..+.+-++...-..++..|.+ ++-+.+...|.+++
T Consensus 86 eh~c~~~l~~~e-~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI 162 (711)
T COG1747 86 EHLCTRVLEYGE-SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK-IKKSKAAEFFGKALYRFI 162 (711)
T ss_pred HHHHHHHHHhcc-hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhc
Confidence 344555555433 555666777777666 55666666776666666666666666665554 66667777777766
Q ss_pred -------cHHHHH----------------------------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCcccc
Q 040667 93 -------YWQLWE----------------------------------NYSHVALDVGNIGQALEAVQMVLNMTNNKRID 130 (207)
Q Consensus 93 -------~~~~~~----------------------------------~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 130 (207)
-..+|. .+-.-|....++++|+..+...++.+..+...
T Consensus 163 ~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a 241 (711)
T COG1747 163 PRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA 241 (711)
T ss_pred chhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence 000111 11122445568899999999999988764333
No 384
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=89.49 E-value=7.3 Score=29.17 Aligned_cols=26 Identities=19% Similarity=-0.018 Sum_probs=15.6
Q ss_pred CCHHHHHHHHHHHHHhcCHHHHHHHH
Q 040667 63 DNGEAWNNIACLHMIKKKSKEAFIAF 88 (207)
Q Consensus 63 ~~~~~~~~l~~~~~~~~~~~~A~~~~ 88 (207)
.++..+..+|..+.+.|++.+|..+|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 34566777777777777777666443
No 385
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=89.13 E-value=1.8 Score=29.08 Aligned_cols=53 Identities=28% Similarity=0.107 Sum_probs=38.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSK 82 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~ 82 (207)
-.+.....+.-.+..|++.-|......++..+|++..+....+.++..+|.-.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~ 121 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS 121 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence 45556667777778888888888888888888888888888888887776543
No 386
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.05 E-value=2.2 Score=34.02 Aligned_cols=84 Identities=11% Similarity=0.090 Sum_probs=66.0
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCC--------C-----C-----HHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cH
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDP--------D-----N-----GEAWNNIACLHMIKKKSKEAFIAFKEAL-----YW 94 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p--------~-----~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~ 94 (207)
|..+++.++|..|.--|+.++++-. . + +-+.-.+..||.+.++.+-|+....+++ ..
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence 6667889999999999999998732 1 1 1234678899999999999999999988 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 040667 95 QLWENYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~~~A~~~~~~al 121 (207)
.-+..-|.|+..+.+|.+|...+.-+.
T Consensus 263 rnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 263 RNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667888888999998887765553
No 387
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=88.92 E-value=17 Score=35.58 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----------------
Q 040667 30 YPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL----------------- 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----------------- 92 (207)
-..+|...|.+....|+++.|..+.-+|.+.. -+.+....+..+...|+-..|+..+++.+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 45789999999999999999999999988876 56788999999999999999999999988
Q ss_pred -----cHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCC
Q 040667 93 -----YWQLWENYSHVALDVGNI--GQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 -----~~~~~~~l~~~~~~~~~~--~~A~~~~~~al~~~p~ 126 (207)
...+...++......+++ ++-++.|+++.++.|.
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~e 1787 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPE 1787 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccc
Confidence 122344555555555654 4788899999999985
No 388
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=88.81 E-value=5.1 Score=26.50 Aligned_cols=49 Identities=22% Similarity=0.074 Sum_probs=37.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Q 040667 6 SAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFT 55 (207)
Q Consensus 6 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 55 (207)
.+...+.+...+.+++..+..++.++..+..+..+|.+. +..+.++.++
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHH
Confidence 344567889999999999988887777888888888754 4566667766
No 389
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.50 E-value=6.2 Score=31.42 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPD---NGEAWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQL 96 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~ 96 (207)
++..+|.-|...|+++.|++.|-++-..-.. ....|.++..+-...|+|..-..+..++. ...+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4556777777777777777777774433222 23456666666666666655544444444 3344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 97 WENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
...-|.+....++|..|..++-.+
T Consensus 232 ~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 232 KCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455555666666777777766554
No 390
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=88.23 E-value=2 Score=36.27 Aligned_cols=52 Identities=19% Similarity=0.092 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHH
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAV 117 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~ 117 (207)
++++..|..+....+++||-+.|.++= ...++..+..-.....++.+|--.|
T Consensus 805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~E~Rf~DA~y~y 860 (1081)
T KOG1538|consen 805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVAESRFNDAAYYY 860 (1081)
T ss_pred cccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhhhhhhccchhHH
Confidence 567778888888888888887777665 3334444555455555555555444
No 391
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=88.15 E-value=6.4 Score=34.00 Aligned_cols=124 Identities=12% Similarity=0.127 Sum_probs=74.3
Q ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH---------ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 10 RGGYETSKILWEAAMALS-SLYPDGWFALGAAALK---------ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
-|+-++|+...-.+++.. |-.++.++.-|.+|-. .+..+.|+.+|+++.+..|.-- .-.+++..+...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhh
Confidence 477888888888887764 4556777777777643 3567889999999999998542 2233444444444
Q ss_pred C-HHHHHHHHHHHh-------------cHHHHHHHH---HHHHHcCCHHHHHHHHHHHHhcCCCccccHHHH
Q 040667 80 K-SKEAFIAFKEAL-------------YWQLWENYS---HVALDVGNIGQALEAVQMVLNMTNNKRIDTELL 134 (207)
Q Consensus 80 ~-~~~A~~~~~~~~-------------~~~~~~~l~---~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~ 134 (207)
. ++...+.=.-++ ...-|...| .+-.-.+++.+|++..+..+++.|-.++-...+
T Consensus 335 ~~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~WYLkS~m 406 (1226)
T KOG4279|consen 335 EHFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPVWYLKSTM 406 (1226)
T ss_pred hhccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCceehHHHHH
Confidence 3 222222211111 111111111 123345789999999999999998644433333
No 392
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.79 E-value=9.7 Score=30.38 Aligned_cols=91 Identities=13% Similarity=0.022 Sum_probs=68.6
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC--------CCHHHHHH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSL---YPDGWFALGAAALKARDVEKALDGFTRAVQLDP--------DNGEAWNN 70 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p--------~~~~~~~~ 70 (207)
.+|.-|...|+++.|+++|-++-+..-. ....+.++..+-..+|+|..-..+-.++.+.-. -.+.+.+.
T Consensus 155 Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~ 234 (466)
T KOG0686|consen 155 DLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKLKCA 234 (466)
T ss_pred HHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcchHHH
Confidence 3678888999999999999996554322 235677788888889999988888888776410 11245666
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh
Q 040667 71 IACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-|.+...+++|..|..+|-.+.
T Consensus 235 agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 235 AGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 7888888889999999987766
No 393
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=87.73 E-value=15 Score=30.59 Aligned_cols=113 Identities=17% Similarity=0.204 Sum_probs=75.6
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHH-HHHHHHhcCHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNI-ACLHMIKKKSKEAFIA 87 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l-~~~~~~~~~~~~A~~~ 87 (207)
+..-+++....|++.+...|..+.+|.....-.+..++|+.-...|.+|+...- +.+.|... ..+....+....+.+.
T Consensus 31 qt~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~lYl~YVR~~~~~~~~~r~~ 109 (656)
T KOG1914|consen 31 QTQPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKLYLSYVRETKGKLFGYREK 109 (656)
T ss_pred ccCCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHHHHHHHHHHccCcchHHHH
Confidence 445899999999999999999999999999999999999999999999986432 34555432 2333344444333322
Q ss_pred ----HHHHh--------cHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHh
Q 040667 88 ----FKEAL--------YWQLWENYSHVAL---------DVGNIGQALEAVQMVLN 122 (207)
Q Consensus 88 ----~~~~~--------~~~~~~~l~~~~~---------~~~~~~~A~~~~~~al~ 122 (207)
|+-++ ...+|..++..+. ...+.+.-...|++++.
T Consensus 110 m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 110 MVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 22222 3444555554432 22355566777777775
No 394
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.68 E-value=11 Score=29.08 Aligned_cols=88 Identities=18% Similarity=0.004 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHccCCCC--------HHHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHH
Q 040667 33 GWFALGAAALKARDVEKALDGFTRAVQLDPDN--------GEAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLW 97 (207)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~ 97 (207)
....++.+|.+.++|..|...+.- +.++... ...+..+|.+|.+.++..+|..+..++- +..+.
T Consensus 105 irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne~Lq 183 (399)
T KOG1497|consen 105 IRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNEQLQ 183 (399)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCHHHH
Confidence 456778888888888888776643 2232211 1346777888888888888887777665 33333
Q ss_pred H----HHHHHHHHcCCHHHHHHHHHHHH
Q 040667 98 E----NYSHVALDVGNIGQALEAVQMVL 121 (207)
Q Consensus 98 ~----~l~~~~~~~~~~~~A~~~~~~al 121 (207)
. ..|+++-..+++-+|.+.|.+..
T Consensus 184 ie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 184 IEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 33444445566666666665554
No 395
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.63 E-value=7 Score=31.16 Aligned_cols=82 Identities=16% Similarity=0.150 Sum_probs=55.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHh--CCCCh--HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHH------HHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMAL--SSLYP--DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGE------AWNNIAC 73 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~--~p~~~--~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~------~~~~l~~ 73 (207)
=+.|...+.|+.|.....+..-. +.++. ..++.+|.+..-.++|..|.+++-+|+...|.+.. +...+..
T Consensus 216 Lr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~iv 295 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIV 295 (493)
T ss_pred HHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHH
Confidence 35667777888888877776422 12222 34567899999999999999999999999997532 2333344
Q ss_pred HHHHhcCHHHHH
Q 040667 74 LHMIKKKSKEAF 85 (207)
Q Consensus 74 ~~~~~~~~~~A~ 85 (207)
+-.-+|++.+=.
T Consensus 296 v~ll~geiPers 307 (493)
T KOG2581|consen 296 VELLLGEIPERS 307 (493)
T ss_pred HHHHcCCCcchh
Confidence 455567766543
No 396
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=87.34 E-value=13 Score=30.23 Aligned_cols=23 Identities=13% Similarity=0.102 Sum_probs=16.9
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCC
Q 040667 104 ALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 104 ~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
+...|++..|-..|+-.+...|+
T Consensus 442 ~~~~~d~~ta~~ifelGl~~f~d 464 (660)
T COG5107 442 YYATGDRATAYNIFELGLLKFPD 464 (660)
T ss_pred HHhcCCcchHHHHHHHHHHhCCC
Confidence 34567777888888877777776
No 397
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=87.28 E-value=1.3 Score=20.30 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=16.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
|..+-.+|.+.|++++|...+.+..+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 44555666666666666666666543
No 398
>PF13041 PPR_2: PPR repeat family
Probab=86.93 E-value=2.3 Score=22.47 Aligned_cols=31 Identities=10% Similarity=0.051 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 94 WQLWENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 94 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
...|..+-..+.+.|++++|.+.|++..+..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 3467777788888889999999998887643
No 399
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=86.14 E-value=3.6 Score=29.09 Aligned_cols=44 Identities=23% Similarity=0.134 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCC
Q 040667 18 ILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDP 62 (207)
Q Consensus 18 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 62 (207)
+..++.+...| ++..+..++.++...|+.++|....+++..+.|
T Consensus 132 ~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 132 EWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 33344444444 444455555555555555555555555555555
No 400
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=84.76 E-value=17 Score=28.29 Aligned_cols=96 Identities=13% Similarity=0.074 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh----cH----HH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDP------DNGEAWNNIACLHMIKKKSKEAFIAFKEAL----YW----QL 96 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~~ 96 (207)
.+++...+..|.+.|+-+.|++.+++..+..- +-.-....+|..|....-..+.++-.+..+ ++ ..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRl 183 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRL 183 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhH
Confidence 46888999999999999999999888765432 112334556666655444444444444333 21 22
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
-...|...+...++.+|...|...+.-..+
T Consensus 184 KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 184 KVYQGLYCMSVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHcccccc
Confidence 233455556677888888888877765543
No 401
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=84.51 E-value=6.3 Score=26.46 Aligned_cols=43 Identities=14% Similarity=0.042 Sum_probs=26.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARD 46 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 46 (207)
+...+..|+|.-|..+.+.++..+|++..+....+.++.++|.
T Consensus 77 A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 77 AQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 4455666777777777777777777766666666666665553
No 402
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.25 E-value=15 Score=29.67 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=11.5
Q ss_pred HHHHHHHhcCHHHHHHHHHHHh
Q 040667 71 IACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-|.+.+.+|+-++|.++++.+.
T Consensus 273 QGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 273 QGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred HHHHHHHcCCcHHHHHHHHHHH
Confidence 3555555555555555555444
No 403
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.19 E-value=23 Score=29.40 Aligned_cols=77 Identities=10% Similarity=-0.136 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN----GEAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
+.+.+.+.......|+.+...+..+..+...|+.+.|+..+..++. +.. ...++.+|+++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455566666677898888888888888889998889999988877 322 2356788999999999999999998
Q ss_pred HHh
Q 040667 90 EAL 92 (207)
Q Consensus 90 ~~~ 92 (207)
...
T Consensus 328 ~L~ 330 (546)
T KOG3783|consen 328 LLR 330 (546)
T ss_pred HHH
Confidence 887
No 404
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=84.11 E-value=16 Score=28.77 Aligned_cols=44 Identities=16% Similarity=-0.062 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTR 56 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 56 (207)
.-+|+..++.++...|.+......+..+|..+|-.+.|...|..
T Consensus 199 l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 199 LLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34455555666666666666666666666666666666666543
No 405
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.98 E-value=12 Score=26.25 Aligned_cols=89 Identities=9% Similarity=-0.004 Sum_probs=67.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCC--C--hHHHHHHHHHHHHccCHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHHHh
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSL--Y--PDGWFALGAAALKARDVEKALDGFTRAV-QLDPDNGEAWNNIACLHMIK 78 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~--~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~-~~~p~~~~~~~~l~~~~~~~ 78 (207)
|-+..+.|+-..|+..|.++-...|- - ..+...-+.++...|-|++-..-.+..- .-+|-...+.-.||..-++.
T Consensus 101 at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ka 180 (221)
T COG4649 101 ATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKA 180 (221)
T ss_pred HHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhc
Confidence 45667889999999999998776541 1 2345566778888999998777766532 22344456778899999999
Q ss_pred cCHHHHHHHHHHHh
Q 040667 79 KKSKEAFIAFKEAL 92 (207)
Q Consensus 79 ~~~~~A~~~~~~~~ 92 (207)
|++..|...|....
T Consensus 181 gd~a~A~~~F~qia 194 (221)
T COG4649 181 GDFAKAKSWFVQIA 194 (221)
T ss_pred cchHHHHHHHHHHH
Confidence 99999999998877
No 406
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=83.53 E-value=11 Score=31.28 Aligned_cols=64 Identities=13% Similarity=0.075 Sum_probs=40.3
Q ss_pred HHHHHHHHHHh----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccccHHHHHHHHHHHhccc
Q 040667 82 KEAFIAFKEAL----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN---KRIDTELLERIVLDLEGRT 145 (207)
Q Consensus 82 ~~A~~~~~~~~----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~~~~~~~~~~~ 145 (207)
..++..|.+++ +...|..+|..+++.+++.+|+.+|.++-..-.. ...+.+.+..+++.-.+.+
T Consensus 296 ~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLi 372 (618)
T PF05053_consen 296 PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELI 372 (618)
T ss_dssp --HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHH
Confidence 34455566665 5566788899999999999999999888766554 3345555555555444433
No 407
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.42 E-value=5.6 Score=32.53 Aligned_cols=89 Identities=10% Similarity=-0.062 Sum_probs=61.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
+.++...|.|+.+...+..+-..-.....+...+-...+.+|+|+.|.....-.+.-.-.++++...-+.....+|-+++
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~ 409 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDK 409 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHH
Confidence 45667788888888887665554444444555566677788888888888777776655666666555555666777777
Q ss_pred HHHHHHHHh
Q 040667 84 AFIAFKEAL 92 (207)
Q Consensus 84 A~~~~~~~~ 92 (207)
+.-++++.+
T Consensus 410 ~~~~wk~~~ 418 (831)
T PRK15180 410 SYHYWKRVL 418 (831)
T ss_pred HHHHHHHHh
Confidence 777777766
No 408
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=83.33 E-value=3.4 Score=19.27 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=18.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
|..+-..+.+.|++++|.+.|.+..+
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45556667777777777777777654
No 409
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=83.20 E-value=10 Score=24.80 Aligned_cols=79 Identities=14% Similarity=0.148 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHhcHHHHHHHHHHHHHcCCHHHH
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEALYWQLWENYSHVALDVGNIGQA 113 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 113 (207)
+..+|+..++.+++-.++-.|++|+.+..+-. -....+.++-+ + +......++|..+...|+.+-.
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~---------~~~~~el~dll--~---i~VisCHNLA~FWR~~gd~~yE 69 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEID---------ESNEIELEDLL--T---ISVISCHNLADFWRSQGDSDYE 69 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhc---------ccccccHHHHH--H---HHHHHHhhHHHHHHHcCChHHH
Confidence 45678888899999999999998876432110 00000110000 0 0445567777888888887777
Q ss_pred HHHHHHH----HhcCCC
Q 040667 114 LEAVQMV----LNMTNN 126 (207)
Q Consensus 114 ~~~~~~a----l~~~p~ 126 (207)
.++++-| +.+-|+
T Consensus 70 LkYLqlASE~VltLiPQ 86 (140)
T PF10952_consen 70 LKYLQLASEKVLTLIPQ 86 (140)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 7776544 445565
No 410
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.78 E-value=12 Score=25.07 Aligned_cols=49 Identities=12% Similarity=0.057 Sum_probs=26.0
Q ss_pred HHHhcCHHHHHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 75 HMIKKKSKEAFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 75 ~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
....|+-+.--+.++... ++..+..+|.+|.+.|+..++-+.+.+|-+.
T Consensus 96 lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 96 LVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 344444444444444433 5566666666666666666666666666553
No 411
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=82.43 E-value=2.9 Score=24.69 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=10.5
Q ss_pred ccCHHHHHHHHHHHHc
Q 040667 44 ARDVEKALDGFTRAVQ 59 (207)
Q Consensus 44 ~~~~~~A~~~~~~a~~ 59 (207)
.|++++|+..|..+++
T Consensus 19 ~gny~eA~~lY~~ale 34 (75)
T cd02680 19 KGNAEEAIELYTEAVE 34 (75)
T ss_pred hhhHHHHHHHHHHHHH
Confidence 4666777776666665
No 412
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=82.00 E-value=13 Score=24.92 Aligned_cols=54 Identities=19% Similarity=0.033 Sum_probs=37.7
Q ss_pred HHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 39 AAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+....|+-++-.+.++....-...++.....+|.+|.+.|+..++-+.+++|.
T Consensus 94 d~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 94 DILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp HHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 445567777777777777766555678899999999999999999999888887
No 413
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=81.25 E-value=4.1 Score=24.06 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=12.7
Q ss_pred HhcCHHHHHHHHHHHh
Q 040667 77 IKKKSKEAFIAFKEAL 92 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~ 92 (207)
..|+|++|+..|..++
T Consensus 18 ~~gny~eA~~lY~~al 33 (75)
T cd02680 18 EKGNAEEAIELYTEAV 33 (75)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5688888888887776
No 414
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=80.62 E-value=9.4 Score=22.53 Aligned_cols=22 Identities=14% Similarity=0.114 Sum_probs=12.6
Q ss_pred HHHHHHHHHhcCHHHHHHHHHH
Q 040667 69 NNIACLHMIKKKSKEAFIAFKE 90 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~ 90 (207)
...+.-+-+.|++.+|+.+|++
T Consensus 10 a~~AVe~D~~gr~~eAi~~Y~~ 31 (75)
T cd02682 10 AINAVKAEKEGNAEDAITNYKK 31 (75)
T ss_pred HHHHHHHHhcCCHHHHHHHHHH
Confidence 3344445566777777666543
No 415
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=80.27 E-value=24 Score=27.08 Aligned_cols=117 Identities=11% Similarity=0.091 Sum_probs=83.2
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc----cCCC-------------C--HHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ----LDPD-------------N--GEAW 68 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~----~~p~-------------~--~~~~ 68 (207)
+..+++.+.++.+++.+..+|--.+.++..+.++.++| ++.+....+..+. .-|. + ...|
T Consensus 110 ~~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~el~~fL~RlP~L~~L~F~DGtPFad~~T~~W 188 (301)
T TIGR03362 110 LAQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDELAAFLERLPGLLELKFSDGTPFADDETRAW 188 (301)
T ss_pred HhCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhCcChhhcccCCCCCCCCHHHHHH
Confidence 35678899999999999998888888889999999999 4555554444332 1111 0 1122
Q ss_pred H----------------------------HHHHHHHHhcCHHHHHHHHHHHh--------cHHHHHHHHHHHHHcCCHHH
Q 040667 69 N----------------------------NIACLHMIKKKSKEAFIAFKEAL--------YWQLWENYSHVALDVGNIGQ 112 (207)
Q Consensus 69 ~----------------------------~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~ 112 (207)
. .-+......+..++|+..++..+ .......++.++...|..+-
T Consensus 189 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eA~~l~~~~gl~~Al~~L~~~~~~~~s~R~rf~~rL~~A~l~~~~g~~~l 268 (301)
T TIGR03362 189 LAQHATRSNAASVAPVAEVGEESDWEELREEARALAAEGGLEAALQRLQQRLAQAREPRERFHWRLLLARLLEQAGKAEL 268 (301)
T ss_pred HHhcccccccccccccccCcccccHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 2 11345567788899999998765 44556777899999999999
Q ss_pred HHHHHHHHHhcCC
Q 040667 113 ALEAVQMVLNMTN 125 (207)
Q Consensus 113 A~~~~~~al~~~p 125 (207)
|...|.++.+...
T Consensus 269 A~~ll~~L~~~~~ 281 (301)
T TIGR03362 269 AQQLYAALDQQIQ 281 (301)
T ss_pred HHHHHHHHHHHHH
Confidence 9999988876543
No 416
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=80.17 E-value=19 Score=25.64 Aligned_cols=110 Identities=22% Similarity=0.090 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-----c--CHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHh----
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKA-----R--DVEKALDGFTRAVQLDPDNGEAWNNIACLHMIK---- 78 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~-----~--~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~---- 78 (207)
.++...|+..+..+.. .+.+.+...+|.+++.- + +.++|++++.++..+. +..+.+.|...|+..
T Consensus 86 ~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g~~k~ 161 (248)
T KOG4014|consen 86 DASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGGKEKF 161 (248)
T ss_pred ccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhccchhh
Confidence 4578899999988866 56788888888887642 2 3789999999998765 445555565555432
Q ss_pred --------------------cCHHHHHHHHHHHh---cHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhc
Q 040667 79 --------------------KKSKEAFIAFKEAL---YWQLWENYSHVALDV----GNIGQALEAVQMVLNM 123 (207)
Q Consensus 79 --------------------~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~ 123 (207)
.+.+.|.++-.++. .+.+.-++.+.|..- ++.++|..+-.++.++
T Consensus 162 ~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 162 KTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred cccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 33445555555554 445555555544322 2445666665555543
No 417
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.57 E-value=21 Score=31.28 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=25.6
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 7 AYNRGGYETSKILWEAAMALSSLY-PDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.+...-|+-|+.+.+.- ..+++. ...+...|.-++..|++++|...|-+++.
T Consensus 344 L~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 344 LFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred HHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 34445555555554331 112211 12344556666666666666666665553
No 418
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=79.28 E-value=4 Score=24.15 Aligned_cols=17 Identities=18% Similarity=0.139 Sum_probs=10.3
Q ss_pred HccCHHHHHHHHHHHHc
Q 040667 43 KARDVEKALDGFTRAVQ 59 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~ 59 (207)
..|+|++|+.+|..+++
T Consensus 18 ~~g~y~eA~~~Y~~aie 34 (76)
T cd02681 18 QEGRYSEAVFYYKEAAQ 34 (76)
T ss_pred HccCHHHHHHHHHHHHH
Confidence 35666666666666554
No 419
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.10 E-value=16 Score=30.27 Aligned_cols=77 Identities=10% Similarity=0.017 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 48 EKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
+...+.+.+.....|.++......+..+...|+.+.|+..++.++ ....++.+|.++.-..+|.+|...+...
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L 329 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLL 329 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 556666666677889998888889999999999888888888888 4556778888888888999998888877
Q ss_pred HhcC
Q 040667 121 LNMT 124 (207)
Q Consensus 121 l~~~ 124 (207)
.+..
T Consensus 330 ~des 333 (546)
T KOG3783|consen 330 RDES 333 (546)
T ss_pred Hhhh
Confidence 7654
No 420
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=78.76 E-value=12 Score=24.59 Aligned_cols=72 Identities=17% Similarity=0.079 Sum_probs=44.3
Q ss_pred chHHHHHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 2 SLARSAYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 2 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
.+|...+..+++-.++-+|++|+....+-. ...+.+.-...+- ......+++..+...|+.
T Consensus 6 llAd~a~~~~~~l~si~hYQqAls~se~~~-----------~~~~~el~dll~i--------~VisCHNLA~FWR~~gd~ 66 (140)
T PF10952_consen 6 LLADQAFKEADPLRSILHYQQALSLSEEID-----------ESNEIELEDLLTI--------SVISCHNLADFWRSQGDS 66 (140)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHHHHHhc-----------ccccccHHHHHHH--------HHHHHhhHHHHHHHcCCh
Confidence 367888888999999999999887632110 0000000000111 123467788888888888
Q ss_pred HHHHHHHHHHh
Q 040667 82 KEAFIAFKEAL 92 (207)
Q Consensus 82 ~~A~~~~~~~~ 92 (207)
+=.+++++-+-
T Consensus 67 ~yELkYLqlAS 77 (140)
T PF10952_consen 67 DYELKYLQLAS 77 (140)
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 421
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=78.63 E-value=16 Score=24.05 Aligned_cols=80 Identities=14% Similarity=0.106 Sum_probs=53.1
Q ss_pred HHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH-Hh------------cHHHHHHHHHHHH
Q 040667 39 AAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKE-AL------------YWQLWENYSHVAL 105 (207)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~------------~~~~~~~l~~~~~ 105 (207)
..+...+.+...+.+++.++..++.++..+..+..+|.+. +....+..++. .- ....|.....++.
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~-~~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~ 93 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKY-DPQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYK 93 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHH-CHHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHH
Confidence 3445567899999999999998888888888888888754 34555555552 11 2233445555666
Q ss_pred HcCCHHHHHHHHHH
Q 040667 106 DVGNIGQALEAVQM 119 (207)
Q Consensus 106 ~~~~~~~A~~~~~~ 119 (207)
+.|++++|+..+-+
T Consensus 94 k~~~~~~Al~~~l~ 107 (140)
T smart00299 94 KDGNFKDAIVTLIE 107 (140)
T ss_pred hhcCHHHHHHHHHH
Confidence 66777776666543
No 422
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=78.48 E-value=5.1 Score=23.92 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=20.5
Q ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 11 GGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 11 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
+.|+.|..+..+++..+. .|+.++|+.+|++++.
T Consensus 3 ~~~~~A~~~I~kaL~~dE---------------~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 3 GYYKQAFEEISKALRADE---------------WGDKEQALAHYRKGLR 36 (79)
T ss_pred hHHHHHHHHHHHHhhhhh---------------cCCHHHHHHHHHHHHH
Confidence 345666666666666543 3566666666666654
No 423
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=77.56 E-value=19 Score=28.36 Aligned_cols=49 Identities=12% Similarity=0.039 Sum_probs=43.7
Q ss_pred ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 44 ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 44 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.+..-+|+..++.++..+|.+......+..+|..+|-.+.|...|...-
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L~ 244 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESLD 244 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhcC
Confidence 3446778999999999999999999999999999999999999997654
No 424
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=77.22 E-value=6.7 Score=18.89 Aligned_cols=25 Identities=8% Similarity=0.401 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFAL 37 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l 37 (207)
.++.|...|++.+..+| ++..|...
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~Wiky 26 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKY 26 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 35566666666666665 34444433
No 425
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=77.14 E-value=6.4 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.105 Sum_probs=13.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhc
Q 040667 102 HVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 102 ~~~~~~~~~~~A~~~~~~al~~ 123 (207)
..+...|+.++|+.+|+++++.
T Consensus 16 L~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 16 LRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred hhhhhcCCHHHHHHHHHHHHHH
Confidence 3455556777777777766653
No 426
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=76.30 E-value=39 Score=27.26 Aligned_cols=28 Identities=21% Similarity=0.125 Sum_probs=24.6
Q ss_pred CchHHHHHhcCCHHHHHHHHHHHHHhCC
Q 040667 1 RSLARSAYNRGGYETSKILWEAAMALSS 28 (207)
Q Consensus 1 r~la~~~~~~~~~~~A~~~~~~al~~~p 28 (207)
|.||..++..++|+-|...|+-+....-
T Consensus 212 R~LAD~aFml~Dy~~A~s~Y~~~k~Df~ 239 (414)
T PF12739_consen 212 RRLADLAFMLRDYELAYSTYRLLKKDFK 239 (414)
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHHHh
Confidence 5689999999999999999998887654
No 427
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=75.16 E-value=15 Score=21.75 Aligned_cols=16 Identities=25% Similarity=0.407 Sum_probs=6.8
Q ss_pred HHHHHHHHHccCCCCH
Q 040667 50 ALDGFTRAVQLDPDNG 65 (207)
Q Consensus 50 A~~~~~~a~~~~p~~~ 65 (207)
|++.+.+++...|+++
T Consensus 32 aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 32 AIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHhCCChH
Confidence 3333333344455554
No 428
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.07 E-value=39 Score=26.59 Aligned_cols=42 Identities=24% Similarity=0.273 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCCChHHH---HHHHHHHHHccCHHHHHHHHHHH
Q 040667 16 SKILWEAAMALSSLYPDGW---FALGAAALKARDVEKALDGFTRA 57 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~---~~l~~~~~~~~~~~~A~~~~~~a 57 (207)
+-..|+++.+.-|+..... ..-|.+++..++|.++...+..+
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAa 84 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAA 84 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHH
Confidence 4455666666666554432 24577777777776665555443
No 429
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=74.71 E-value=15 Score=23.25 Aligned_cols=46 Identities=17% Similarity=0.075 Sum_probs=30.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhc
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKK 79 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 79 (207)
...-|.+....|+++.|.+...++.+..+..+-.+..-+.+-...|
T Consensus 62 al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 62 ALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 3456777788899999999999987665444444444455555444
No 430
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=73.13 E-value=38 Score=25.69 Aligned_cols=67 Identities=13% Similarity=0.124 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhCCCChHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 16 SKILWEAAMALSSLYPDGWFALGAAALKAR----------------------DVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 16 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
-...++.=++..|++..++..+|..+.... -.+.|...+.++++++|....+...+-.
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 455666677789999998888888875431 2477889999999999999988888877
Q ss_pred HHHHhcCHH
Q 040667 74 LHMIKKKSK 82 (207)
Q Consensus 74 ~~~~~~~~~ 82 (207)
+-...|+.+
T Consensus 142 ~s~~fgeP~ 150 (277)
T PF13226_consen 142 ISAYFGEPD 150 (277)
T ss_pred HHhhcCCch
Confidence 776666654
No 431
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.12 E-value=40 Score=25.90 Aligned_cols=94 Identities=9% Similarity=0.012 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC---H---HHHHHHHHHHHHhcCHHHHHHHHHHHh----cH----HH
Q 040667 31 PDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---G---EAWNNIACLHMIKKKSKEAFIAFKEAL----YW----QL 96 (207)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~----~~ 96 (207)
.+++.++|..|.+.++.+.+.+.+.+.+...-.. . -....+|.+|-...-..+.++.....+ ++ ..
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 4577788888888888888877777766543211 1 223455655555544555555555544 11 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNMT 124 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~~ 124 (207)
-...|...+...++.+|...+...+.-.
T Consensus 195 K~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF 222 (412)
T COG5187 195 KVYKGIFKMMRRNFKEAAILLSDILPTF 222 (412)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 2223444455567777777776666543
No 432
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=72.99 E-value=8.2 Score=17.92 Aligned_cols=27 Identities=11% Similarity=0.179 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 96 LWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 96 ~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
.|..+..++.+.|+++.|...+.+..+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345556666777777777777766544
No 433
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=72.52 E-value=9.6 Score=24.86 Aligned_cols=29 Identities=31% Similarity=0.456 Sum_probs=17.0
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCC
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 64 (207)
.+|..+...|++++|...|-+|+...|.-
T Consensus 68 ~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 68 QLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 45666666666666666666666665543
No 434
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=72.47 E-value=7.6 Score=22.23 Aligned_cols=13 Identities=15% Similarity=0.128 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHh
Q 040667 14 ETSKILWEAAMAL 26 (207)
Q Consensus 14 ~~A~~~~~~al~~ 26 (207)
+.|+.+..+|+..
T Consensus 3 ~~A~~~~~~Av~~ 15 (69)
T PF04212_consen 3 DKAIELIKKAVEA 15 (69)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3455555555444
No 435
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=72.32 E-value=15 Score=28.68 Aligned_cols=90 Identities=10% Similarity=-0.141 Sum_probs=65.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcc----C--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQL----D--PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLW 97 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~----~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~ 97 (207)
.+...|+..++|.+|+......+.- + +.-.+++..-..+|+.+.+...|...+..+- ...+-
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 5678889999999999887776532 2 2234566666778888888888888877666 33333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTN 125 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p 125 (207)
..=|.++....+|..|..+|-++++-..
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~ 240 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFD 240 (411)
T ss_pred HhccceeecccccchHHHHHHHHHcccc
Confidence 4446666777899999999999988543
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=71.55 E-value=20 Score=25.26 Aligned_cols=44 Identities=9% Similarity=0.011 Sum_probs=36.4
Q ss_pred HHHHHHHHHh----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 83 EAFIAFKEAL----YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 83 ~A~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..++..++.+ +..++..++.++...|+.++|.....++..+.|.
T Consensus 129 ~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 129 AYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 3334444445 8888999999999999999999999999999993
No 437
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=71.51 E-value=10 Score=22.29 Aligned_cols=32 Identities=25% Similarity=0.224 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHc
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQ 59 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 59 (207)
.++|+.++.+|+..+ ..|++++|+..|..+++
T Consensus 3 l~~Ai~lv~~Av~~D---------------~~g~y~eA~~lY~~ale 34 (75)
T cd02684 3 LEKAIALVVQAVKKD---------------QRGDAAAALSLYCSALQ 34 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HhccHHHHHHHHHHHHH
Confidence 345666666665443 34556666666655554
No 438
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.16 E-value=29 Score=28.19 Aligned_cols=43 Identities=19% Similarity=0.109 Sum_probs=24.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-----------CChHHHHHHHHHHHHccC
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSS-----------LYPDGWFALGAAALKARD 46 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p-----------~~~~~~~~l~~~~~~~~~ 46 (207)
|++++..+.|++|+.++-.|=+.+. +.+.....+-+||+.+.+
T Consensus 170 aRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLkn 223 (568)
T KOG2561|consen 170 ARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKN 223 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcc
Confidence 5566677778887777665544321 122233345667766654
No 439
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.40 E-value=32 Score=30.27 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=41.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDN-GEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-.++.+..-|.-|+...+. ...+++. ..+....|.-++..|++++|+..|-+++
T Consensus 341 L~iL~kK~ly~~Ai~LAk~-~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI 395 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKS-QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI 395 (933)
T ss_pred HHHHHHhhhHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence 4555667778888887765 2334433 4678889999999999999999999988
No 440
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=69.30 E-value=16 Score=20.81 Aligned_cols=19 Identities=21% Similarity=0.037 Sum_probs=8.7
Q ss_pred HHHHHHHhcCHHHHHHHHH
Q 040667 71 IACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 71 l~~~~~~~~~~~~A~~~~~ 89 (207)
.|.-.-..|++++|+..|.
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~ 29 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYK 29 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHH
Confidence 3444444445555544443
No 441
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=69.20 E-value=15 Score=29.24 Aligned_cols=44 Identities=30% Similarity=0.342 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC------------HHHHHHHHHHHh
Q 040667 47 VEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK------------SKEAFIAFKEAL 92 (207)
Q Consensus 47 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~ 92 (207)
...|++++++|.. .++|..|..++.++..+|+ |.+|...+.+|-
T Consensus 334 ~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN 389 (404)
T PF12753_consen 334 IKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKAN 389 (404)
T ss_dssp HHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHh
Confidence 4666667666654 3455556666666555543 456666666654
No 442
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=68.91 E-value=8.7 Score=22.65 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=8.2
Q ss_pred cCHHHHHHHHHHHHc
Q 040667 45 RDVEKALDGFTRAVQ 59 (207)
Q Consensus 45 ~~~~~A~~~~~~a~~ 59 (207)
|+|++|...|..+++
T Consensus 20 ~~y~eA~~~Y~~~i~ 34 (75)
T cd02677 20 GDYEAAFEFYRAGVD 34 (75)
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555555543
No 443
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=68.61 E-value=45 Score=24.61 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.6
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSL 29 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~ 29 (207)
+|....+.|+|++.+.++++++..+|.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~e 33 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPE 33 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS-
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCC
Confidence 678888999999999999999999775
No 444
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=68.29 E-value=34 Score=27.71 Aligned_cols=91 Identities=14% Similarity=0.052 Sum_probs=50.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCC-----H---HH--------HHHHHHHHH-Hhc-----CHHHHHHHHHHHh-
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDN-----G---EA--------WNNIACLHM-IKK-----KSKEAFIAFKEAL- 92 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~-----~---~~--------~~~l~~~~~-~~~-----~~~~A~~~~~~~~- 92 (207)
..|.-++..|+|++|+..|+..+..-|-. . .+ -|.+|.... ... ..++..+.++-+.
T Consensus 209 k~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lELAAY 288 (422)
T PF06957_consen 209 KEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLELAAY 288 (422)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHH
Confidence 45777788999999999999998764321 1 11 122332211 111 1223333444333
Q ss_pred ----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 ----------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...++..--...++.++|..|..+.++.|++.|.
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 1112222223456789999999999999999986
No 445
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=67.15 E-value=32 Score=31.54 Aligned_cols=107 Identities=16% Similarity=-0.004 Sum_probs=0.0
Q ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHH----------HHHHHHhc
Q 040667 10 RGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNI----------ACLHMIKK 79 (207)
Q Consensus 10 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l----------~~~~~~~~ 79 (207)
.++|+.|+.++.++ ....+-..-+.-.+-|-|.+|+.+|+--.+....--.+|... +..|...|
T Consensus 893 L~ry~~AL~hLs~~------~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 893 LKRYEDALSHLSEC------GETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHHc------CccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Q ss_pred CHHHHHHHHHHHh---------------cHHHH---HHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 80 KSKEAFIAFKEAL---------------YWQLW---ENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 80 ~~~~A~~~~~~~~---------------~~~~~---~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
+.++|++.|+.+. ...+. ..++.-+...+++-+|-+.....+.
T Consensus 967 klekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 967 KLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
No 446
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=67.03 E-value=33 Score=22.53 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 040667 65 GEAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQM 119 (207)
Q Consensus 65 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~ 119 (207)
..+|...+... ++..+.|.-.. .+..|...|..+...|++.+|.+.|+.
T Consensus 69 LkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 69 LKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 34566555432 33455555444 666778889999999999999998864
No 447
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=66.96 E-value=12 Score=17.59 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHc----cCHHHHHHHHHHHHc
Q 040667 33 GWFALGAAALKA----RDVEKALDGFTRAVQ 59 (207)
Q Consensus 33 ~~~~l~~~~~~~----~~~~~A~~~~~~a~~ 59 (207)
+.+.+|.++..- .+..+|..+++++.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 344555555431 255666666665543
No 448
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=66.62 E-value=25 Score=23.32 Aligned_cols=37 Identities=8% Similarity=0.021 Sum_probs=23.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHHh
Q 040667 103 VALDVGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDLE 142 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 142 (207)
.++..-+.+.|..+|.++++..|+ .+..--.++..++
T Consensus 85 ~~iaKle~e~Ae~vY~el~~~~P~---HLpaHla~i~~lD 121 (139)
T PF12583_consen 85 SWIAKLEPENAEQVYEELLEAHPD---HLPAHLAMIQNLD 121 (139)
T ss_dssp HHHTTS-HHHHHHHHHHHHHH-TT----THHHHHHHHHHH
T ss_pred HHHHhhCHHHHHHHHHHHHHHCcc---hHHHHHHHHHccC
Confidence 355556778999999999999998 4444444444443
No 449
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=66.54 E-value=65 Score=25.74 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=40.8
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhCCCC-----hHHHH--HHHHHHHHccCHHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALSSLY-----PDGWF--ALGAAALKARDVEKALDGFTR 56 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~p~~-----~~~~~--~l~~~~~~~~~~~~A~~~~~~ 56 (207)
.+..++..++|..|...|.+++...+.. ...+. ..|..++..-++++|.+.+++
T Consensus 136 ~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 136 YARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4567889999999999999999875421 22333 345556778899999999986
No 450
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=66.50 E-value=13 Score=29.47 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=32.6
Q ss_pred cCHHHHHHHHHHHh---cHHHHHHHHHHHHHcCCH------------HHHHHHHHHHHhc
Q 040667 79 KKSKEAFIAFKEAL---YWQLWENYSHVALDVGNI------------GQALEAVQMVLNM 123 (207)
Q Consensus 79 ~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~~~------------~~A~~~~~~al~~ 123 (207)
.-+..|+++++++. .+..|..+|.+++.+|++ .+|...+.+|-+.
T Consensus 332 ~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 332 ELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 34678999999999 888899999888888753 4555555555443
No 451
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=66.13 E-value=16 Score=31.24 Aligned_cols=19 Identities=11% Similarity=0.109 Sum_probs=10.2
Q ss_pred HHHHhcCHHHHHHHHHHHh
Q 040667 74 LHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 74 ~~~~~~~~~~A~~~~~~~~ 92 (207)
++.+.|+..||...+++.-
T Consensus 826 AfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 826 AFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred HHHHhcchHHHHHHHHHhh
Confidence 3444555566665555544
No 452
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=65.87 E-value=55 Score=25.74 Aligned_cols=118 Identities=15% Similarity=0.134 Sum_probs=83.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHH-----ccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYP-DGWFALGAAALK-----ARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKS 81 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~-----~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~ 81 (207)
...+-.+++...+.+++....--+ ...-.++.++-. .-+|..-...|.-.....| ++.+-.|.+.+..+..-.
T Consensus 267 W~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp 345 (415)
T COG4941 267 WDRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGP 345 (415)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhH
Confidence 345567888999999988753222 233334444432 3467777777777666666 455666677777777777
Q ss_pred HHHHHHHHHHh-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 82 KEAFIAFKEAL-------YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 82 ~~A~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..++...+... ....+...|..+.+.|+.++|...|.+++.+.++
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~ 397 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARN 397 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCC
Confidence 77777776655 4456677899999999999999999999999885
No 453
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=65.69 E-value=65 Score=25.39 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=33.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCCh--------HHHHHHHHHHHHccCHHHHHHH
Q 040667 5 RSAYNRGGYETSKILWEAAMAL--SSLYP--------DGWFALGAAALKARDVEKALDG 53 (207)
Q Consensus 5 ~~~~~~~~~~~A~~~~~~al~~--~p~~~--------~~~~~l~~~~~~~~~~~~A~~~ 53 (207)
.......++++++..+...+.. .|.+. .....+|..+.+.|+.++-...
T Consensus 12 ~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~l 70 (411)
T KOG1463|consen 12 QNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDL 70 (411)
T ss_pred HHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence 3344556678999999998884 22222 3556889999999887664443
No 454
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=64.24 E-value=60 Score=27.54 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=53.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEA 91 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 91 (207)
..+.+....+.-+.-........+..+..+-..+..++|-..|++.+..+|+ ..++..+.-+.+.|-...|...+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (578)
T PRK15490 23 KLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNETERAYALYETLIAQNND--EARYEYARRLYNTGLAKDAQLILKKV 100 (578)
T ss_pred hHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCc--chHHHHHHHHHhhhhhhHHHHHHHHh
Confidence 3444444444333323333445566677777888999999999999999888 56777778888888888888777643
No 455
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=63.76 E-value=18 Score=28.46 Aligned_cols=52 Identities=19% Similarity=0.129 Sum_probs=41.4
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMALS--------SLYPDGWFALGAAALKARDVEKALDGF 54 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~~~~~~A~~~~ 54 (207)
.|+.++..+++++|...|..|..+. -++..+++.+|..++.+++++..+-.+
T Consensus 47 ~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 47 AGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred hhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5788899999999999999998763 235578888999999888877655443
No 456
>PRK11619 lytic murein transglycosylase; Provisional
Probab=63.34 E-value=1e+02 Score=26.74 Aligned_cols=113 Identities=8% Similarity=-0.110 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCC----------------------
Q 040667 7 AYNRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDN---------------------- 64 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~---------------------- 64 (207)
....++++....++...-......+...+-+|..+...|+.++|...|+++... .+.
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~-~~fYG~LAa~~Lg~~~~~~~~~~~~ 400 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ-RGFYPMVAAQRLGEEYPLKIDKAPK 400 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC-CCcHHHHHHHHcCCCCCCCCCCCCc
Confidence 345667777766666644333445667778888888888888888888887532 110
Q ss_pred H------HHHHHHHHHHHHhcCHHHHHHHHHHHh---cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 65 G------EAWNNIACLHMIKKKSKEAFIAFKEAL---YWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 65 ~------~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
. .--...+..+...|+...|...+..++ +..-...++......|.++.++....++
T Consensus 401 ~~~~~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 401 PDSALTQGPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred hhhhhccChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 0 011233455666777777777776666 5555666777777778777777665443
No 457
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=62.61 E-value=20 Score=18.46 Aligned_cols=32 Identities=9% Similarity=-0.126 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Q 040667 19 LWEAAMALSSLYPDGWFALGAAALKARDVEKA 50 (207)
Q Consensus 19 ~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A 50 (207)
.|..++..+|++...+..+++.+...|+...|
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 35567777787777777778887777777554
No 458
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.29 E-value=67 Score=24.07 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHccCHHHHHHHH
Q 040667 30 YPDGWFALGAAALKARDVEKALDGF 54 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~ 54 (207)
++..+..+|..+++.+++.+|..+|
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHH
Confidence 3445555555555555555555554
No 459
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=61.17 E-value=16 Score=16.93 Aligned_cols=25 Identities=8% Similarity=-0.096 Sum_probs=14.9
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHH
Q 040667 17 KILWEAAMALSSLYPDGWFALGAAA 41 (207)
Q Consensus 17 ~~~~~~al~~~p~~~~~~~~l~~~~ 41 (207)
+.+..+++..+|.+..+|..+-.+.
T Consensus 3 l~~~~~~l~~~pknys~W~yR~~ll 27 (31)
T PF01239_consen 3 LEFTKKALEKDPKNYSAWNYRRWLL 27 (31)
T ss_dssp HHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcccccHHHHHHHHH
Confidence 4455666666666666666554443
No 460
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=61.01 E-value=61 Score=28.31 Aligned_cols=104 Identities=19% Similarity=0.180 Sum_probs=63.1
Q ss_pred HHHHHHccCHHHHHHHHHHHHccCCCC----HHHHHHHHHHHHH--hcCHHHHHHHHHHHh-----cHHHHHHHHHHHHH
Q 040667 38 GAAALKARDVEKALDGFTRAVQLDPDN----GEAWNNIACLHMI--KKKSKEAFIAFKEAL-----YWQLWENYSHVALD 106 (207)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~l~~~~~~--~~~~~~A~~~~~~~~-----~~~~~~~l~~~~~~ 106 (207)
|...+..+++..+..-|..++.+.|.+ .....+.+.+++. .+++..++.-..-+. ...++...+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 555666777777777777777776632 3344555555443 456666666666555 44455556677777
Q ss_pred cCCHHHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Q 040667 107 VGNIGQALEAVQMVLNMTNNKRIDTELLERIVLDL 141 (207)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~ 141 (207)
.+.++-|.+...-.....|+.......+..+.+.+
T Consensus 140 l~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll 174 (748)
T KOG4151|consen 140 LNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL 174 (748)
T ss_pred HHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 77777777776666777776444444344444433
No 461
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=60.84 E-value=75 Score=24.49 Aligned_cols=91 Identities=11% Similarity=-0.156 Sum_probs=62.9
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHcc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQL------DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLW 97 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~ 97 (207)
.+...+++.|.|.+|+......+.- .|.-..++..-..+|....+...+...+..+- ...+-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 4677788899999999887776532 23445666667778888888777777666554 22333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 98 ENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 98 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
..-|..++...+|..|-.+|-++++-...
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~Egft~ 238 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALEGFTL 238 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHhcccc
Confidence 33355567777899999999888875543
No 462
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=59.91 E-value=19 Score=17.33 Aligned_cols=14 Identities=36% Similarity=0.553 Sum_probs=8.1
Q ss_pred CHHHHHHHHHHHHc
Q 040667 46 DVEKALDGFTRAVQ 59 (207)
Q Consensus 46 ~~~~A~~~~~~a~~ 59 (207)
++++|..+|+++.+
T Consensus 23 d~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 23 DYEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHH
Confidence 35666666666544
No 463
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=59.60 E-value=80 Score=24.39 Aligned_cols=83 Identities=12% Similarity=0.109 Sum_probs=55.5
Q ss_pred ccCHHHHHHHHHHHHcc----CC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh--------cHH---HHHHHHHHHHH
Q 040667 44 ARDVEKALDGFTRAVQL----DP--DNGEAWNNIACLHMIKKKSKEAFIAFKEAL--------YWQ---LWENYSHVALD 106 (207)
Q Consensus 44 ~~~~~~A~~~~~~a~~~----~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~---~~~~l~~~~~~ 106 (207)
+...++-++-+.+.++- +. .-..+|.++|..|...++.+.+.+.+.+.+ ... ....+|.+|-.
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhcc
Confidence 34445556666444432 21 225799999999999999999999988877 222 23455666655
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 040667 107 VGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 107 ~~~~~~A~~~~~~al~~~p~ 126 (207)
..-.++.++.....++...+
T Consensus 168 ~~vV~e~lE~~~~~iEkGgD 187 (412)
T COG5187 168 RKVVEESLEVADDIIEKGGD 187 (412)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 55566777777777776654
No 464
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=59.45 E-value=0.23 Score=33.11 Aligned_cols=49 Identities=22% Similarity=0.040 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHH
Q 040667 8 YNRGGYETSKILWEAAMALSS-LYPDGWFALGAAALKARDVEKALDGFTR 56 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 56 (207)
...+.+.....+++.++..++ .++..+..+..+|.+.+++++..++++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~ 67 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT 67 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc
Confidence 344566667777888876654 4577778889999888877888887763
No 465
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=59.01 E-value=33 Score=22.77 Aligned_cols=34 Identities=15% Similarity=0.049 Sum_probs=20.4
Q ss_pred HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHH
Q 040667 43 KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHM 76 (207)
Q Consensus 43 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 76 (207)
..-+.+.|..+|...++..|++-.++..+....-
T Consensus 88 aKle~e~Ae~vY~el~~~~P~HLpaHla~i~~lD 121 (139)
T PF12583_consen 88 AKLEPENAEQVYEELLEAHPDHLPAHLAMIQNLD 121 (139)
T ss_dssp TTS-HHHHHHHHHHHHHH-TT-THHHHHHHHHHH
T ss_pred HhhCHHHHHHHHHHHHHHCcchHHHHHHHHHccC
Confidence 3345577777777777777777766666655443
No 466
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=58.92 E-value=44 Score=21.14 Aligned_cols=24 Identities=8% Similarity=-0.041 Sum_probs=15.3
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 69 NNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 69 ~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
..-|.+-...|++..|.+...++-
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~ 86 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAA 86 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334555666677777777776665
No 467
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=58.53 E-value=72 Score=23.54 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=45.5
Q ss_pred HHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 40 AALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 40 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
-+.+.+...+++...+.-+.-.|.+.....-+-..+.-.|++++|..-++-+-
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 45667888999999999999999999888888888999999999988777665
No 468
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=57.86 E-value=1.2e+02 Score=25.76 Aligned_cols=63 Identities=17% Similarity=0.183 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHc--cCHHHHHHHHHHHHcc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 30 YPDGWFALGAAALKA--RDVEKALDGFTRAVQL-----DPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 30 ~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
.|.++.+||++-... ..-..++..|.+++.. +..+..-|..+|-.+++.++|.+|+..+-.+-
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa 345 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHKRYREALRSWAEAA 345 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555544321 2234456666666543 22334446677888899999999998887665
No 469
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=57.45 E-value=90 Score=24.29 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=62.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 040667 9 NRGGYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAF 88 (207)
Q Consensus 9 ~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~ 88 (207)
..|+...|.++-.+ ..+ | +...|...-.++...++|++-..+... ...|-.|-....++...|+..+|..+.
T Consensus 189 ~~~~~k~A~kl~k~-Fkv-~-dkrfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~eA~~yI 260 (319)
T PF04840_consen 189 EMGQEKQAEKLKKE-FKV-P-DKRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKEASKYI 260 (319)
T ss_pred HCCCHHHHHHHHHH-cCC-c-HHHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHHHHHHH
Confidence 44555544444222 222 2 445677777888888888877765432 234455666777777888888888887
Q ss_pred HHHhcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 040667 89 KEALYWQLWENYSHVALDVGNIGQALEAVQ 118 (207)
Q Consensus 89 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 118 (207)
.++- .......|.+.|++.+|.+...
T Consensus 261 ~k~~----~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 261 PKIP----DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HhCC----hHHHHHHHHHCCCHHHHHHHHH
Confidence 7632 1445567788888888876643
No 470
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.97 E-value=1e+02 Score=24.86 Aligned_cols=126 Identities=13% Similarity=0.112 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHH------------HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcC-
Q 040667 14 ETSKILWEAAMALSSLYPDGWFALGAAAL------------KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKK- 80 (207)
Q Consensus 14 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~------------~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~- 80 (207)
.+++.+=.+.+..+|+...+|+..-.++. +..-+++-+.+...++..+|++-.+|+.+.+++.+.+.
T Consensus 46 ~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~ 125 (421)
T KOG0529|consen 46 EEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS 125 (421)
T ss_pred hHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc
Confidence 45677777888889988887765433332 22245677888888999999999999999999987765
Q ss_pred -HHHHHHHHHHHh-----cHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCccccHHHHHHHHH
Q 040667 81 -SKEAFIAFKEAL-----YWQLWENYSHVALDV----GNIGQALEAVQMVLNMTNNKRIDTELLERIVL 139 (207)
Q Consensus 81 -~~~A~~~~~~~~-----~~~~~~~l~~~~~~~----~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 139 (207)
+..-+..+++++ +...|...=.+.... ....+-+.+..+++.-+++++..+.....++.
T Consensus 126 ~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 126 DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred hHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 577788889888 444554443333222 23566778888888888775544444444443
No 471
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.80 E-value=91 Score=24.66 Aligned_cols=74 Identities=5% Similarity=-0.074 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCCCCHHH-H--HHHHHHHHHhcCHHHHHHHHHHHh----------------------------------
Q 040667 50 ALDGFTRAVQLDPDNGEA-W--NNIACLHMIKKKSKEAFIAFKEAL---------------------------------- 92 (207)
Q Consensus 50 A~~~~~~a~~~~p~~~~~-~--~~l~~~~~~~~~~~~A~~~~~~~~---------------------------------- 92 (207)
+-..|+++.+.-|++... + .+-|.+++..++|.++...+..+-
T Consensus 40 ~~~~y~Q~~q~~kk~~~~il~~L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~vNDNi~~Y~g 119 (449)
T COG3014 40 PKKAYEQSKQFTKKKKNALLWDLQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATMINDNVRAYGG 119 (449)
T ss_pred chhHHHHHHHhhhhhhHHHHHhhhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhhhccchhhcCc
Confidence 344556666665554332 2 345777777777766655544332
Q ss_pred ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 93 ----YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 93 ----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
-..+.+.+|.-|+..++++.|.--++++.+.
T Consensus 120 ~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 120 NIYEGVLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred hhHHHHHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 3345566788889999998888888777654
No 472
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=56.62 E-value=88 Score=24.64 Aligned_cols=62 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHccCC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHh------cHHHHHHHHHHHHHcCC
Q 040667 48 EKALDGFTRAVQLDP---DNGEAWNNIACLHMIKKKSKEAFIAFKEAL------YWQLWENYSHVALDVGN 109 (207)
Q Consensus 48 ~~A~~~~~~a~~~~p---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~l~~~~~~~~~ 109 (207)
++....+...+...| ..+.+|..++.+....|.++..+..|++|+ --.+...+..++...+.
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~~k~~ 190 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILKMKSQ 190 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhh
No 473
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=56.61 E-value=75 Score=24.83 Aligned_cols=55 Identities=9% Similarity=-0.016 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHh------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 040667 66 EAWNNIACLHMIKKKSKEAFIAFKEAL------------YWQLWENYSHVALDVGNIGQALEAVQMV 120 (207)
Q Consensus 66 ~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a 120 (207)
.....++.+|.+.+++..|-..+...- ....+..+|.+|.+.++..+|..+..++
T Consensus 104 ~irl~LAsiYE~Eq~~~~aaq~L~~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRa 170 (399)
T KOG1497|consen 104 SIRLHLASIYEKEQNWRDAAQVLVGIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRA 170 (399)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456789999999999999887775433 3456788999999999999998888776
No 474
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=56.24 E-value=83 Score=25.67 Aligned_cols=70 Identities=14% Similarity=0.050 Sum_probs=0.0
Q ss_pred hHHHHHhcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHH
Q 040667 3 LARSAYNRGGYETSKILWEAAMA--LSSLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIAC 73 (207)
Q Consensus 3 la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 73 (207)
+.+.++..|..++++..++.-+. +.| +....+.+.+.+++.|+|..|.......+...-.+...-+.|+.
T Consensus 109 ~vR~~l~~~~~~~~l~~L~n~~~yGiF~-D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l 180 (429)
T PF10037_consen 109 LVRQCLELGAEDELLELLKNRLQYGIFP-DNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALAL 180 (429)
T ss_pred HHHHHHhcCCHHHHHHHHhChhhcccCC-ChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHH
No 475
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.10 E-value=34 Score=22.83 Aligned_cols=31 Identities=16% Similarity=0.253 Sum_probs=18.2
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHccCCCCHH
Q 040667 36 ALGAAALKARDVEKALDGFTRAVQLDPDNGE 66 (207)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~ 66 (207)
.+|..++..|+++++...+-.|+...|.-..
T Consensus 86 ~lGE~L~~qg~~e~ga~h~~nAi~vcgqpaq 116 (143)
T KOG4056|consen 86 QLGEELLAQGNEEEGAEHLANAIVVCGQPAQ 116 (143)
T ss_pred HhHHHHHHccCHHHHHHHHHHHHhhcCCHHH
Confidence 4566666666666666666666665554443
No 476
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=56.05 E-value=1e+02 Score=24.40 Aligned_cols=80 Identities=14% Similarity=0.004 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 040667 12 GYETSKILWEAAMALSSLYPDGWFALGAAALKARDVEKALDGFTRAVQL--DPDNGEAWNNIACLHMIKKKSKEAFIAFK 89 (207)
Q Consensus 12 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 89 (207)
+|..-..+|.-.....| ++.+-.+.+.......-.+.++...+..... -..+-..+...|..+.++|+.++|...|+
T Consensus 311 DW~~I~aLYdaL~~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~ayd 389 (415)
T COG4941 311 DWPAIDALYDALEQAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYD 389 (415)
T ss_pred ChHHHHHHHHHHHHhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHH
Confidence 56666666666666666 6666667777776666677777777765554 22345577888999999999999999999
Q ss_pred HHh
Q 040667 90 EAL 92 (207)
Q Consensus 90 ~~~ 92 (207)
+++
T Consensus 390 rAi 392 (415)
T COG4941 390 RAI 392 (415)
T ss_pred HHH
Confidence 998
No 477
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.58 E-value=36 Score=19.10 Aligned_cols=25 Identities=12% Similarity=0.019 Sum_probs=14.0
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHH
Q 040667 34 WFALGAAALKARDVEKALDGFTRAV 58 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~ 58 (207)
+...-.-+..+|++++|.++.++..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344445556677777776666544
No 478
>PF11349 DUF3151: Protein of unknown function (DUF3151); InterPro: IPR014487 This group represents an uncharacterised conserved protein.
Probab=55.03 E-value=57 Score=21.34 Aligned_cols=34 Identities=9% Similarity=0.151 Sum_probs=24.2
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 93 YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 93 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
....+..++......|+.+++..|.+-.-+.+|.
T Consensus 91 fLRal~aLa~AA~~IGE~dE~~Rc~~~L~Dsdp~ 124 (129)
T PF11349_consen 91 FLRALAALARAAQAIGETDEYDRCRQFLRDSDPE 124 (129)
T ss_pred HHHHHHHHHHHHHHhCChhHHHHHHHHHHhCCHH
Confidence 4455667777778888888888877766666664
No 479
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=54.98 E-value=57 Score=21.32 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=46.2
Q ss_pred cCHHHHHHHHHHHHccCCCC------H---HHHHHHHHHHHHhcCHHHHHHHHHHHh-------cHHHHHHHHHHHHHcC
Q 040667 45 RDVEKALDGFTRAVQLDPDN------G---EAWNNIACLHMIKKKSKEAFIAFKEAL-------YWQLWENYSHVALDVG 108 (207)
Q Consensus 45 ~~~~~A~~~~~~a~~~~p~~------~---~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~l~~~~~~~~ 108 (207)
+.-..-...+++++....++ + .+|...+. ..+++.+.|.... .+..|...|..+...|
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~------~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~ 113 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYAD------LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG 113 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHT------TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHH------HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC
Confidence 34455566666666554332 2 23333332 2237777776665 7788889999999999
Q ss_pred CHHHHHHHHHHHH
Q 040667 109 NIGQALEAVQMVL 121 (207)
Q Consensus 109 ~~~~A~~~~~~al 121 (207)
++++|...|+.++
T Consensus 114 ~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 114 NFKKADEIYQLGI 126 (126)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998764
No 480
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=54.62 E-value=1.9e+02 Score=27.22 Aligned_cols=77 Identities=17% Similarity=0.120 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHcc----CCCC--HHHHHHHHHHHHHhc--------------------CHHHHHHHHHHHh--------
Q 040667 47 VEKALDGFTRAVQL----DPDN--GEAWNNIACLHMIKK--------------------KSKEAFIAFKEAL-------- 92 (207)
Q Consensus 47 ~~~A~~~~~~a~~~----~p~~--~~~~~~l~~~~~~~~--------------------~~~~A~~~~~~~~-------- 92 (207)
+++++.+|.++... .|.. .++...++..+.... .-.++.....+++
T Consensus 361 ~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~ 440 (1185)
T PF08626_consen 361 YEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLS 440 (1185)
T ss_pred HHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCC
Confidence 46677777776522 2221 245555566555555 5556666666666
Q ss_pred ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 93 ---YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 93 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
...++..+|.+|...|-..+..-+.+.++..
T Consensus 441 ~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~ 474 (1185)
T PF08626_consen 441 VEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQ 474 (1185)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4667788888888888777776666666543
No 481
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=54.54 E-value=42 Score=26.51 Aligned_cols=27 Identities=33% Similarity=0.521 Sum_probs=18.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHcc
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQL 60 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~ 60 (207)
+...|+-.+..++++.|...|..|..+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHH
Confidence 445677777777777777777776654
No 482
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.20 E-value=1.6e+02 Score=26.11 Aligned_cols=52 Identities=10% Similarity=-0.020 Sum_probs=33.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 040667 7 AYNRGGYETSKILWEAAMALSSLY--PDGWFALGAAALKARDVEKALDGFTRAV 58 (207)
Q Consensus 7 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 58 (207)
+++.+.|++|++..+.....-|.. ...+..+-.-+...|+|++|-...-+.+
T Consensus 366 ll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~ 419 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML 419 (846)
T ss_pred HHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh
Confidence 456778888888776665554432 2233334444567889999888776654
No 483
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=53.68 E-value=1.4e+02 Score=25.24 Aligned_cols=93 Identities=9% Similarity=-0.072 Sum_probs=63.7
Q ss_pred CCChHHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHHH
Q 040667 28 SLYPDGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYSH 102 (207)
Q Consensus 28 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~~ 102 (207)
|-+...+..+-.++...-.+.-..-.+.+.+... .+..+++.++.+|...| .++-...+++.+ +...-..++.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en~-n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKENG-NEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhcC-chhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 4445555566666666666676777777777654 56678999999998884 455556666555 4455556676
Q ss_pred HHHHcCCHHHHHHHHHHHHhc
Q 040667 103 VALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 103 ~~~~~~~~~~A~~~~~~al~~ 123 (207)
.|.+ ++...+..+|.+++..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yr 160 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYR 160 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHH
Confidence 6665 7888888888888753
No 484
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=53.25 E-value=62 Score=21.16 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=24.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 97 WENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 97 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
...+|..+...|++++|..+|-+|+.+.|+
T Consensus 66 qV~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 66 QVQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 456788888889999999999999999885
No 485
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=53.12 E-value=2.2e+02 Score=28.79 Aligned_cols=78 Identities=18% Similarity=0.209 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcc---C----CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHh---cHHHHHHHHHHHHHcCCHHHHHHH
Q 040667 47 VEKALDGFTRAVQL---D----PDNGEAWNNIACLHMIKKKSKEAFIAFKEAL---YWQLWENYSHVALDVGNIGQALEA 116 (207)
Q Consensus 47 ~~~A~~~~~~a~~~---~----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~ 116 (207)
..+-+-.+++++-. + ..-+..|...+.+....|.++-|..++-+|. -..+....|..+...|+-..|+..
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~~i~~E~AK~lW~~gd~~~Al~~ 1724 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRLPEIVLERAKLLWQTGDELNALSV 1724 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcccchHHHHHHHHHHhhccHHHHHHH
Confidence 45555566665432 2 2346889999999999999999999988888 778899999999999999999999
Q ss_pred HHHHHhcC
Q 040667 117 VQMVLNMT 124 (207)
Q Consensus 117 ~~~al~~~ 124 (207)
+++.++.+
T Consensus 1725 Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1725 LQEILSKN 1732 (2382)
T ss_pred HHHHHHhh
Confidence 99999654
No 486
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=52.66 E-value=1.3e+02 Score=25.31 Aligned_cols=55 Identities=15% Similarity=-0.037 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh-----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 68 WNNIACLHMIKKKSKEAFIAFKEAL-----------------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 68 ~~~l~~~~~~~~~~~~A~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
.+.+..-++..|.-+++++++.-+. ....+..+..||...|...+|....++++.
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ 225 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALA 225 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 4567777777888888887764443 556677788888888888888888887765
No 487
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=52.44 E-value=36 Score=29.60 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=67.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHH--HccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHH
Q 040667 4 ARSAYNRGGYETSKILWEAAMALSSLY----PDGWFALGAAAL--KARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMI 77 (207)
Q Consensus 4 a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~l~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 77 (207)
|+..++.+++..+.--|..++.+-|.+ ...+.+.+.++. .+++|..++.-..-++...|....+....+.+|..
T Consensus 60 ~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r~~~y~a 139 (748)
T KOG4151|consen 60 GNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKRARKYEA 139 (748)
T ss_pred hhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhhhhHHHH
Confidence 567788889999877788888877743 233445555555 46789999999999999999999999999999999
Q ss_pred hcCHHHHHHHHH
Q 040667 78 KKKSKEAFIAFK 89 (207)
Q Consensus 78 ~~~~~~A~~~~~ 89 (207)
.+.++-|++...
T Consensus 140 l~k~d~a~rdl~ 151 (748)
T KOG4151|consen 140 LNKLDLAVRDLR 151 (748)
T ss_pred HHHHHHHHHHHH
Confidence 999888887743
No 488
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=52.39 E-value=1.5e+02 Score=25.49 Aligned_cols=57 Identities=12% Similarity=0.186 Sum_probs=46.8
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHh--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 040667 70 NIACLHMIKKKSKEAFIAFKEAL--YWQLWENYSHVALDVGNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 70 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 126 (207)
.+-.-+....+|.-|++.+.++- ...+|...|..+.+.+++..|..-|.+++++...
T Consensus 561 cLRdqLie~ErYqlaV~mckKc~iD~f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkge 619 (1141)
T KOG1811|consen 561 CLRDQLIEAERYQLAVEMCKKCGIDTFGAWHAWGLACLKAENLAAAREKFKQAFKLKGE 619 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCcccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC
Confidence 33344556677888888888877 6678999999999999999999999999998744
No 489
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.39 E-value=1.3e+02 Score=24.56 Aligned_cols=89 Identities=10% Similarity=0.096 Sum_probs=54.9
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHccCCCCH-------HHHHHHHHHHHHhcCHHHHHHHHHHHh-----cHHHHHHHH
Q 040667 34 WFALGAAALKARDVEKALDGFTRAVQLDPDNG-------EAWNNIACLHMIKKKSKEAFIAFKEAL-----YWQLWENYS 101 (207)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~l~ 101 (207)
+..|-.++.-+|+++.. -+.+++.|... .+-+..|.+|...++|.+|+..|-.++ .-...-..+
T Consensus 238 L~GLlR~H~lLgDhQat----~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~ 313 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQAT----SQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTT 313 (525)
T ss_pred HHHHHHHHHHhhhhHhh----hhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchh
Confidence 34555667778996553 33355665432 223778999999999999999999888 111222233
Q ss_pred HHHHHc-CCHHHHHHHHHHHHhcCCC
Q 040667 102 HVALDV-GNIGQALEAVQMVLNMTNN 126 (207)
Q Consensus 102 ~~~~~~-~~~~~A~~~~~~al~~~p~ 126 (207)
.++... +..++-...+.-++...|.
T Consensus 314 y~~d~inKq~eqm~~llai~l~~yPq 339 (525)
T KOG3677|consen 314 YQYDMINKQNEQMHHLLAICLSMYPQ 339 (525)
T ss_pred hhHhhhhhhHHHHHHHHHHHHHhCch
Confidence 333222 3455566666666777774
No 490
>PRK11619 lytic murein transglycosylase; Provisional
Probab=52.19 E-value=1.6e+02 Score=25.58 Aligned_cols=114 Identities=7% Similarity=-0.016 Sum_probs=64.4
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHH
Q 040667 8 YNRGGYETSKILWEAAMALSSLYPD----GWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKE 83 (207)
Q Consensus 8 ~~~~~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~ 83 (207)
+...+.+.|...+.+.....+-... ++..++.-....+...+|...+..+.... .+...+-....+....++++.
T Consensus 252 lar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~-~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 252 VARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS-QSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc-CCcHHHHHHHHHHHHccCHHH
Confidence 3445566666666655444332221 22233333333322456666666544322 222333333334447777777
Q ss_pred HHHHHHHHh-----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 84 AFIAFKEAL-----YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 84 A~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
....+...- ...-.+.+|..+...|+.++|...|.++..
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 666665533 556778888888889999999999988744
No 491
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=52.00 E-value=33 Score=28.29 Aligned_cols=53 Identities=25% Similarity=0.127 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhcCHHHH
Q 040667 32 DGWFALGAAALKARDVEKALDGFTRAVQLDPDNGEAWNNIACLHMIKKKSKEA 84 (207)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 84 (207)
+....++.--+..|+|.=+.+.+++++--+|++..+....+.++.++|=-.|+
T Consensus 453 drVl~la~ea~~kGdyrW~a~lln~~VfAdp~n~~Ar~L~Ad~lEQLgYqaE~ 505 (655)
T COG2015 453 DRVLELAREAFDKGDYRWAAELLNQAVFADPGNKAARELQADALEQLGYQAES 505 (655)
T ss_pred HHHHHHHHHHHhcccchHHHHHHhhHHhcCCccHHHHHHHHhHHHHhhhhhcc
Confidence 33456777777888888888888888888888888888888888887764443
No 492
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=51.16 E-value=30 Score=20.07 Aligned_cols=14 Identities=21% Similarity=0.188 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHhC
Q 040667 14 ETSKILWEAAMALS 27 (207)
Q Consensus 14 ~~A~~~~~~al~~~ 27 (207)
+.|+.+..+++..+
T Consensus 4 ~~a~~l~~~Av~~D 17 (75)
T cd02656 4 QQAKELIKQAVKED 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666665543
No 493
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=51.05 E-value=30 Score=20.18 Aligned_cols=15 Identities=13% Similarity=0.067 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHhC
Q 040667 13 YETSKILWEAAMALS 27 (207)
Q Consensus 13 ~~~A~~~~~~al~~~ 27 (207)
.+.|+.++.+++..+
T Consensus 3 ~~~A~~l~~~Av~~D 17 (75)
T cd02678 3 LQKAIELVKKAIEED 17 (75)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666677775544
No 494
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=50.92 E-value=78 Score=21.65 Aligned_cols=56 Identities=21% Similarity=0.008 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 040667 67 AWNNIACLHMIKKKSKEAFIAFKEAL-------------YWQLWENYSHVALDVGNIGQALEAVQMVLN 122 (207)
Q Consensus 67 ~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 122 (207)
.....+.-..+.|+...|.+.++-+- .+..-...+..+...|++.+|...+..+++
T Consensus 77 ~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~~ 145 (155)
T PF10938_consen 77 AAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQALD 145 (155)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 34555666778888888888887665 455556677778888888888888887764
No 495
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=50.61 E-value=1.3e+02 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=36.0
Q ss_pred HhcCHHHHHHHHHHHh---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 040667 77 IKKKSKEAFIAFKEAL---------------YWQLWENYSHVALDVGNIGQALEAVQMVLNM 123 (207)
Q Consensus 77 ~~~~~~~A~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 123 (207)
-.++|.+|...+-..- .-.+...+|.|.++.|...+|..++.....-
T Consensus 468 L~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~el~~s 529 (595)
T PF05470_consen 468 LHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSELCSS 529 (595)
T ss_pred HHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHcc
Confidence 3577888887665544 3345667899999999999999999988763
No 496
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=50.49 E-value=49 Score=19.23 Aligned_cols=16 Identities=25% Similarity=0.470 Sum_probs=7.1
Q ss_pred HcCCHHHHHHHHHHHH
Q 040667 106 DVGNIGQALEAVQMVL 121 (207)
Q Consensus 106 ~~~~~~~A~~~~~~al 121 (207)
..|++++|+.+|.+++
T Consensus 20 ~~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 20 EAGDYEEALELYKKAI 35 (77)
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3444444444444443
No 497
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=50.33 E-value=31 Score=16.90 Aligned_cols=31 Identities=13% Similarity=0.085 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCH---HHHHHHHHHHHhcCC
Q 040667 95 QLWENYSHVALDVGNI---GQALEAVQMVLNMTN 125 (207)
Q Consensus 95 ~~~~~l~~~~~~~~~~---~~A~~~~~~al~~~p 125 (207)
...+++|.++.+.... .+++..+++.++..|
T Consensus 2 qt~FnyAw~Lv~S~~~~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 2 QTQFNYAWGLVKSNNREDQQEGIALLEELYRDEP 35 (35)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHCCCS-
T ss_pred cchhHHHHHHhcCCCHHHHHHHHHHHHHHHhccC
Confidence 3456777777776654 456666666665443
No 498
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=49.77 E-value=42 Score=22.78 Aligned_cols=29 Identities=21% Similarity=0.376 Sum_probs=18.7
Q ss_pred HHHHHHHHcc-CHHHHHHHHHHHHccCCCC
Q 040667 36 ALGAAALKAR-DVEKALDGFTRAVQLDPDN 64 (207)
Q Consensus 36 ~l~~~~~~~~-~~~~A~~~~~~a~~~~p~~ 64 (207)
.+|..+...| +.+++...|-+|+...|.-
T Consensus 95 ~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP 124 (148)
T TIGR00985 95 QLGEELMAQGTNVDEGAVHFYNALKVYPQP 124 (148)
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHHhCCCH
Confidence 4566666666 6666777776666666543
No 499
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.21 E-value=1.2e+02 Score=23.19 Aligned_cols=127 Identities=9% Similarity=0.006 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc--cCHHHHHHHHHHHHccCCCCHHHHHHHHHHH---HHhcCHHHH---
Q 040667 13 YETSKILWEAAMALSSLYPDGWFALGAAALKA--RDVEKALDGFTRAVQLDPDNGEAWNNIACLH---MIKKKSKEA--- 84 (207)
Q Consensus 13 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~---~~~~~~~~A--- 84 (207)
++.-++++..++..+|.+...|...-.++..- ..|..=....++.++.+|.+-..|.-.-.+. ...++++..
T Consensus 90 ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e 169 (328)
T COG5536 90 LDNELDFLDEALKDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE 169 (328)
T ss_pred hhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH
Confidence 45567788999999999999998887777654 6688888889999999998877665433333 122333222
Q ss_pred HHHHHHHh-----cHHHHHHHH---HHHHHcCC------HHHHHHHHHHHHhcCCCccccHHHHHHHHH
Q 040667 85 FIAFKEAL-----YWQLWENYS---HVALDVGN------IGQALEAVQMVLNMTNNKRIDTELLERIVL 139 (207)
Q Consensus 85 ~~~~~~~~-----~~~~~~~l~---~~~~~~~~------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 139 (207)
+++-...+ +..+|...- ......|+ +++-+++...++-.+|++...+..+....+
T Consensus 170 ~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~visqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~~~ 238 (328)
T COG5536 170 LEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDVISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGVSS 238 (328)
T ss_pred HHhHHHHHhhCCCChHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhhhhcCccccchhhHHHHHhc
Confidence 33333333 556665552 22222333 566677777788888886555555444443
No 500
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.33 E-value=2.2e+02 Score=25.79 Aligned_cols=92 Identities=15% Similarity=0.069 Sum_probs=50.5
Q ss_pred CchHHHHHhcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHccCH--HHHHHHHHHHHccCCCCH---------
Q 040667 1 RSLARSAYNRGGYETSKILWEAAMALS----SLYPDGWFALGAAALKARDV--EKALDGFTRAVQLDPDNG--------- 65 (207)
Q Consensus 1 r~la~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~~--~~A~~~~~~a~~~~p~~~--------- 65 (207)
|.|+..|...|+.++|++.+++...-. +...+.+-.+-..+-.++.- +-..++-.=.+..+|..+
T Consensus 508 ~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~~ 587 (877)
T KOG2063|consen 508 RELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSEDK 587 (877)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccCh
Confidence 357788889999999999999888733 22233333333333333333 333333333333333321
Q ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHh
Q 040667 66 ----EAWNNIACLHMIKKKSKEAFIAFKEAL 92 (207)
Q Consensus 66 ----~~~~~l~~~~~~~~~~~~A~~~~~~~~ 92 (207)
..-.....-|......+-++.+++.++
T Consensus 588 ~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li 618 (877)
T KOG2063|consen 588 QEAESISRDDVLNYLKSKEPKLLIPYLEHLI 618 (877)
T ss_pred hhhccCCHHHHHHHhhhhCcchhHHHHHHHh
Confidence 001112223456677788888888888
Done!